Citrus Sinensis ID: 018882
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FKC3 | 508 | Pentatricopeptide repeat- | yes | no | 1.0 | 0.687 | 0.74 | 1e-160 | |
| Q9SCP4 | 447 | Pentatricopeptide repeat- | no | no | 0.948 | 0.740 | 0.475 | 3e-90 | |
| Q9SQU6 | 486 | Pentatricopeptide repeat- | no | no | 0.988 | 0.709 | 0.442 | 1e-79 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.988 | 0.400 | 0.249 | 3e-38 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.905 | 0.385 | 0.272 | 2e-35 | |
| Q9SV96 | 563 | Pentatricopeptide repeat- | no | no | 0.951 | 0.589 | 0.289 | 7e-35 | |
| Q8L844 | 709 | Pentatricopeptide repeat- | no | no | 0.871 | 0.428 | 0.301 | 6e-34 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.914 | 0.533 | 0.271 | 1e-32 | |
| Q9FLD8 | 678 | Pentatricopeptide repeat- | no | no | 0.934 | 0.480 | 0.238 | 3e-32 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.957 | 0.363 | 0.25 | 3e-31 |
| >sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 563 bits (1450), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/350 (74%), Positives = 303/350 (86%), Gaps = 1/350 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
MLGKCKQPEKAHELFQ M++EGC N + +TAL+SAY RSG FD AF+LLE MK++ +CQ
Sbjct: 159 MLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQ 218
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV+TYSILIKS L+ FAFDKVQ LLSDM QGIRPNT+TYNTLIDAYG+AKMF EME T
Sbjct: 219 PDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMEST 278
Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L++ML ED C+PD WTMN TLRAFG +GQI+ ME CYEKFQS+GI+P+I TFNILLDSYG
Sbjct: 279 LIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYG 338
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
K+G+++KMSAVMEYMQKYHYSWTIVTYN+VIDAFGRAGDLKQMEYLFRLM+SERI PSCV
Sbjct: 339 KSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCV 398
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
TLCSLVRAYG A K +K+G VLRFI+NSDI LD VFFNCLVDAYGR++ FAEMKGVLE+M
Sbjct: 399 TLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELM 458
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
+++G KPDK+TYRTMV+AY +GM H KE +VE + E + +K+PDF
Sbjct: 459 EKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVESVGEAQVVVKKPDF 508
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (850), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 158/332 (47%), Positives = 232/332 (69%), Gaps = 1/332 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+LG CKQP++A LF+ M+ EG +T+L+S YG+S L DKAFS LE+MK+ DC+
Sbjct: 103 VLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCK 162
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV T+++LI C K FD V++++ +MS G+ +TVTYNT+ID YG+A MF EME
Sbjct: 163 PDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESV 222
Query: 121 LVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L M+ + D PDV T+N + ++GN + ME Y +FQ G+QP I TFNIL+ S+G
Sbjct: 223 LADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFG 282
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
KAG ++KM +VM++M+K +S T VTYNIVI+ FG+AG +++M+ +FR M+ + +KP+ +
Sbjct: 283 KAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSI 342
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T CSLV AY AG K+ SVLR I NSD++LDT FFNC+++AYG+ A MK + M
Sbjct: 343 TYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQM 402
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQ 331
++R CKPDK+T+ TM++ Y+ +G+ + +E +
Sbjct: 403 EERKCKPDKITFATMIKTYTAHGIFDAVQELE 434
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (760), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/346 (44%), Positives = 209/346 (60%), Gaps = 1/346 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+LGK QP +A +LF M++EG + + +TALL+AY RS L D AFS+L+ MK+ P CQ
Sbjct: 133 LLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQ 192
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV TYS L+K+C+ A FD V +L +M + I PNTVT N ++ YGR F +ME
Sbjct: 193 PDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKV 252
Query: 121 LVKML-SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L ML S C+PDVWTMN L FGN G+ID ME YEKF++ GI+P TFNIL+ SYG
Sbjct: 253 LSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYG 312
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
K ++KMS+VMEYM+K + WT TYN +I+AF GD K ME F MRSE +K
Sbjct: 313 KKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTK 372
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T C L+ Y +AG K+ S ++ +I +T F+N ++ A + EM+ V M
Sbjct: 373 TFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRM 432
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMK 345
++R C D T+ MV AY GM + + +K+ + +A K
Sbjct: 433 KERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMDRTVATK 478
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 188/385 (48%), Gaps = 40/385 (10%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+LG+ +K E+F M +G + S+TAL++AYGR+G ++ + LL+ MKN
Sbjct: 150 LLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNE-KIS 208
Query: 61 PDVNTYSILIKSCLKA-FAFDKVQALLSDMSTQGIRPNTVTYNTLIDA------------ 107
P + TY+ +I +C + ++ + L ++M +GI+P+ VTYNTL+ A
Sbjct: 209 PSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEM 268
Query: 108 -----------------------YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144
+G+ + ++ L +M S PD+ + N L A+
Sbjct: 269 VFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYA 328
Query: 145 NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIV 204
SG I + + Q+AG P+ NT+++LL+ +G++G ++ + + M+ +
Sbjct: 329 KSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAA 388
Query: 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264
TYNI+I+ FG G K++ LF M E I+P T ++ A G G E +L+++
Sbjct: 389 TYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYM 448
Query: 265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK 324
+DI+ + + +++A+G+ + E M + G P T+ +++ +++ G+
Sbjct: 449 TANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGL- 507
Query: 325 NHAKEFQDLVEKMDETCLAMKRPDF 349
KE + ++ ++ ++ + R F
Sbjct: 508 --VKESEAILSRLVDSGIPRNRDTF 530
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Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 157/352 (44%), Gaps = 36/352 (10%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
GK +P++A ++ MV G + ++ +L+SAY R G+ D+A L M +PD
Sbjct: 325 GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEK-GTKPD 383
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
V TY+ L+ +A + ++ +M G +PN T+N I YG F EM
Sbjct: 384 VFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFD 443
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
++ PD+ T N L FG +G + +++ + AG P TFN L+ +Y + G
Sbjct: 444 EINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
FE+ V M + + TYN V+ A R G +Q E + M R KP+ +T C
Sbjct: 504 SFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYC 563
Query: 243 SLVRAYGHAGKPEKLGSVLR-----FIDNSDIMLDTVF---------------------- 275
SL+ AY + + + S+ I+ ++L T+
Sbjct: 564 SLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKER 623
Query: 276 --------FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS 319
N +V YGR + A+ GVL+ M++RG P TY +++ +S
Sbjct: 624 GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHS 675
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 171/346 (49%), Gaps = 14/346 (4%)
Query: 2 LGKCKQPEKAHELFQAMVDEGC-DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
LGK + + E+F+ M + + ++ L+S G+ G A L MKN+ C+
Sbjct: 107 LGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS-GCR 165
Query: 61 PDVNTYSILIKSCL----KAFAFDKVQALLSDMSTQGI---RPNTVTYNTLIDAYGRAKM 113
PD + Y+ LI + L KA A +KV+ L M +GI +PN VTYN L+ A+ ++
Sbjct: 166 PDASVYNALITAHLHTRDKAKALEKVRGYLDKM--KGIERCQPNVVTYNILLRAFAQSGK 223
Query: 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNI 173
++ + PDV+T N + A+G +G I ME + +S +P I TFN+
Sbjct: 224 VDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNV 283
Query: 174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233
L+DSYGK FEKM + + + T+ T+N +I +G+A + + E++F+ M
Sbjct: 284 LIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMN 343
Query: 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293
PS +T ++ YG+ G + + + SD +L N +++ Y R + E
Sbjct: 344 YIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEAD 403
Query: 294 GVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339
+ PD TY+ + +AY+ MK ++ Q L++KM++
Sbjct: 404 KLFHNASAFRVHPDASTYKFLYKAYTKADMK---EQVQILMKKMEK 446
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May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 158/312 (50%), Gaps = 8/312 (2%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
E A + + M N+ F+ LL+ + G + K F +L+ MK+ +PD Y++
Sbjct: 391 ESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSI-GVKPDRQFYNV 449
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID---AYGRAKMFAEMELTLVKML 125
+I + K D M ++GI P+ VT+NTLID +GR + EM M
Sbjct: 450 VIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEM---FEAME 506
Query: 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185
C P T N + ++G+ + D M++ K +S GI P++ T L+D YGK+G F
Sbjct: 507 RRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFN 566
Query: 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245
+E M+ + YN +I+A+ + G +Q FR+M S+ +KPS + L SL+
Sbjct: 567 DAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLI 626
Query: 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305
A+G + + +VL+++ + + D V + L+ A R+ F ++ V E M GCK
Sbjct: 627 NAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCK 686
Query: 306 PDKVTYRTMVRA 317
PD+ R+M+R+
Sbjct: 687 PDRKA-RSMLRS 697
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 146/320 (45%), Gaps = 1/320 (0%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A +L M D GC + ++ L++ + G D+A L M ++ CQP+V T++I++
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS-GCQPNVITHNIIL 316
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE 130
+S + + LL+DM +G P+ VT+N LI+ R + L KM C+
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ 376
Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAV 190
P+ + N L F ++D + E+ S G P I T+N +L + K G E +
Sbjct: 377 PNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEI 436
Query: 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250
+ + S ++TYN VID +AG + L MR++ +KP +T SLV
Sbjct: 437 LNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR 496
Query: 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVT 310
GK ++ + I + V FN ++ + + L M RGCKP++ +
Sbjct: 497 EGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETS 556
Query: 311 YRTMVRAYSTNGMKNHAKEF 330
Y ++ + GM A E
Sbjct: 557 YTILIEGLAYEGMAKEALEL 576
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 164/327 (50%), Gaps = 1/327 (0%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
+ KQ + AH LF M + +++ L++++G+ G+FD A S L+ M+ D+
Sbjct: 167 RAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQD-RVSGDL 225
Query: 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123
YS LI+ + + K ++ S + GI P+ V YN++I+ YG+AK+F E L + +
Sbjct: 226 VLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKE 285
Query: 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183
M P+ + + L + + + + + + + T NI++D YG+
Sbjct: 286 MNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDM 345
Query: 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243
++ + ++K +V+YN ++ +G A + +LFRLM+ + I+ + VT +
Sbjct: 346 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT 405
Query: 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
+++ YG + EK ++++ + + I + + ++ ++ +G+ + + ++ G
Sbjct: 406 MIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSG 465
Query: 304 CKPDKVTYRTMVRAYSTNGMKNHAKEF 330
+ D+V Y+TM+ AY G+ HAK
Sbjct: 466 VEIDQVLYQTMIVAYERVGLMGHAKRL 492
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 161/336 (47%), Gaps = 2/336 (0%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
LG+ + A +F+ G +F+AL+SAYGRSGL ++A S+ MK +P
Sbjct: 243 LGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY-GLRP 301
Query: 62 DVNTYSILIKSCLKA-FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
++ TY+ +I +C K F +V +M G++P+ +T+N+L+ R ++
Sbjct: 302 NLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNL 361
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
+M + E DV++ N L A GQ+D + + I P++ +++ ++D + K
Sbjct: 362 FDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAK 421
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
AG F++ + M+ + V+YN ++ + + G ++ + R M S IK VT
Sbjct: 422 AGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVT 481
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
+L+ YG GK +++ V + ++ + + ++ L+D Y + + E + +
Sbjct: 482 YNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541
Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
G + D V Y ++ A NG+ A D + K
Sbjct: 542 SAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTK 577
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | ||||||
| 224069810 | 388 | predicted protein [Populus trichocarpa] | 1.0 | 0.899 | 0.785 | 1e-168 | |
| 359480144 | 497 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.702 | 0.797 | 1e-168 | |
| 255578090 | 636 | pentatricopeptide repeat-containing prot | 0.977 | 0.536 | 0.786 | 1e-164 | |
| 356527376 | 515 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.677 | 0.76 | 1e-163 | |
| 449443726 | 456 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.760 | 0.765 | 1e-161 | |
| 449475395 | 511 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.679 | 0.765 | 1e-161 | |
| 224069806 | 485 | predicted protein [Populus trichocarpa] | 0.962 | 0.692 | 0.754 | 1e-160 | |
| 334188265 | 508 | pentatricopeptide repeat-containing prot | 1.0 | 0.687 | 0.74 | 1e-158 | |
| 9758872 | 495 | unnamed protein product [Arabidopsis tha | 0.962 | 0.678 | 0.705 | 1e-147 | |
| 297792071 | 498 | pentatricopeptide repeat-containing prot | 0.962 | 0.674 | 0.705 | 1e-147 |
| >gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa] gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 275/350 (78%), Positives = 319/350 (91%), Gaps = 1/350 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
MLGKCKQP+KAH+LFQAM+DEGC +S+TALLSAYGRSGLFDKAFS++E MKNTPDC+
Sbjct: 39 MLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGRSGLFDKAFSIMEEMKNTPDCR 98
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV+TYSILIKSCL+ FAFDKVQ LLSDM + GIRPNTVTYNT+IDAYG+AKMFAEME T
Sbjct: 99 PDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVTYNTVIDAYGKAKMFAEMEAT 158
Query: 121 LVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L++MLS+ DCEPDVWTMN T+RAFG SGQ++ ME CYEKFQSAGI+P+I TFNILLDSYG
Sbjct: 159 LMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLDSYG 218
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
KAG+++KMSAVMEYMQ+YHYSWTIVTYN+VIDAFGRAGDLKQMEYLFRLMRSERIKPSCV
Sbjct: 219 KAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 278
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
TLCSLVRAY AGKPEK+GSVLRFI+NSD+ LDTVFFNCLVDAYGRL+CFAEMK VLE+M
Sbjct: 279 TLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLELM 338
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
+++GCKPDKVTYRTM++AYS GM +HAK+ ++L+ ++ T K+PDF
Sbjct: 339 EEKGCKPDKVTYRTMIKAYSIKGMTSHAKKLRNLLGSVEVTRSPKKKPDF 388
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Vitis vinifera] gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 279/350 (79%), Positives = 311/350 (88%), Gaps = 1/350 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
MLGKCKQPEKAH LF AM+DEGC N +++TALLSAY RSGLFDKAFSLLE MKNTPDCQ
Sbjct: 147 MLGKCKQPEKAHALFLAMIDEGCVVNHEAYTALLSAYSRSGLFDKAFSLLEKMKNTPDCQ 206
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV+TYS+LIKSCL+ AFDKV LLSDM+ QGI+PNTVTYNTLIDAYG+AK FAEME T
Sbjct: 207 PDVHTYSVLIKSCLQVVAFDKVPVLLSDMANQGIKPNTVTYNTLIDAYGKAKRFAEMEST 266
Query: 121 LVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L++ML E CEPDVWTMN TLRAFG+SGQI+TMEKCYEKFQSAGI+P+I TFNILLDSYG
Sbjct: 267 LLEMLREGKCEPDVWTMNSTLRAFGSSGQIETMEKCYEKFQSAGIEPNIKTFNILLDSYG 326
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
KA +EKMSAVMEYMQKYH+SWTIVTYN+VIDAFGRAGDLKQMEYLFRLMRSERIKPSCV
Sbjct: 327 KAEKYEKMSAVMEYMQKYHFSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 386
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
TLCSLVRAYG AGK EK+G VLRFI+NSD+MLD VFFNCLVDAYGRL CFAEMKGVLE+M
Sbjct: 387 TLCSLVRAYGRAGKAEKIGGVLRFIENSDVMLDIVFFNCLVDAYGRLGCFAEMKGVLEMM 446
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
+++GCKPDK+TYRTM++AY GM + AKE Q L+ DET L M +PDF
Sbjct: 447 KKKGCKPDKITYRTMIKAYKIGGMTSCAKELQGLMRMPDETRLEMGKPDF 496
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 272/346 (78%), Positives = 305/346 (88%), Gaps = 5/346 (1%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
MLGKCKQPEKAHELFQAM+ EGCD + +S+TALLSAYGRSGL DKAFSLLE MK PDCQ
Sbjct: 164 MLGKCKQPEKAHELFQAMIHEGCDVSHESYTALLSAYGRSGLLDKAFSLLEEMKRNPDCQ 223
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV+TYSILIKSC++ FAFDK + LLS+M + GI PNT+TYNTLIDAYG+AKMF EME T
Sbjct: 224 PDVHTYSILIKSCVQVFAFDKAKTLLSNMESLGISPNTITYNTLIDAYGKAKMFEEMEAT 283
Query: 121 LVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
LVKMLS+ +CEPDVWTMN TLRAFG SGQI+TMEKCYEKFQ AGI+PSI TFN+LLDSYG
Sbjct: 284 LVKMLSQQNCEPDVWTMNSTLRAFGISGQIETMEKCYEKFQGAGIEPSIMTFNVLLDSYG 343
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
KAG ++KMSAVMEYMQKYHYSWTI+TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV
Sbjct: 344 KAGDYKKMSAVMEYMQKYHYSWTIITYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 403
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
TLCSLVRAYG A KPEK+ VLRFI+NSDI LDTVFFNCLVDAYGR+ CFAEMKGVL +M
Sbjct: 404 TLCSLVRAYGQAEKPEKIEGVLRFIENSDITLDTVFFNCLVDAYGRMGCFAEMKGVLILM 463
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL----VEKMDETC 341
+Q+G +PDK+TYRTM++AYS+ GM H KE QDL V K++ C
Sbjct: 464 EQKGYRPDKITYRTMIKAYSSKGMTKHVKELQDLEAAGVRKVNNPC 509
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527376|ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 266/350 (76%), Positives = 308/350 (88%), Gaps = 1/350 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
MLGKCKQPEKAHELFQAMVDEGC + +S+TALLSAY RSGL DKAFSLLE MKNTP CQ
Sbjct: 166 MLGKCKQPEKAHELFQAMVDEGCVLDCESYTALLSAYSRSGLLDKAFSLLEEMKNTPGCQ 225
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV TYSIL+KSCL+ FAFDK+Q+LLSDM+ +GI+PNTVTYNTLIDAYG+A+ F+EME
Sbjct: 226 PDVQTYSILLKSCLQVFAFDKIQSLLSDMTNRGIKPNTVTYNTLIDAYGKARKFSEMESI 285
Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
LV+ML++ C+PDVWTMN TLRAFGN GQI+TMEKCYEKFQ+AGIQP++ TFNILLDSYG
Sbjct: 286 LVEMLADRYCQPDVWTMNSTLRAFGNIGQIETMEKCYEKFQNAGIQPNVQTFNILLDSYG 345
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
KA ++KMSAVMEYMQKYHYSWTIVT+NIVIDAFG+AGDLKQMEYLFRLMRSERIKPSCV
Sbjct: 346 KAQDYKKMSAVMEYMQKYHYSWTIVTFNIVIDAFGKAGDLKQMEYLFRLMRSERIKPSCV 405
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
TLCSLVRAY AGKPEK+ VLRF++NSD++LDTVFFNCLVDAY RL C AEMKGVLE+M
Sbjct: 406 TLCSLVRAYARAGKPEKISGVLRFVENSDVLLDTVFFNCLVDAYARLGCLAEMKGVLEMM 465
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
+Q GCKPD VTYRTM++ Y+ GM +HAKE ++L+ ++ L +PDF
Sbjct: 466 KQNGCKPDIVTYRTMIKTYTYKGMDSHAKELRELLPTVNRPPLKRDKPDF 515
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 268/350 (76%), Positives = 304/350 (86%), Gaps = 3/350 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
MLGKCKQ EKA+ELFQ M++EGC+ + +S+TALLSAY RSGL D+AFS+L MKN+PDCQ
Sbjct: 109 MLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSILNEMKNSPDCQ 168
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV+TYSILIKSCL+ FAF+K Q LLSDM T+GI+PNT+TYNT IDAYG+AKMFAEME
Sbjct: 169 PDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMESI 228
Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
LV ML++D C+PDVWTMN TLRAFG SGQ++TMEKCYEKFQ AGIQPSI TFNILLDSYG
Sbjct: 229 LVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYG 288
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
KA +EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG+LKQME+LFRLMRSERIKPSCV
Sbjct: 289 KAESYEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCV 348
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
TLCSLVRAYG AGK EK+ SVL ++NSDIMLDTVF+NCLVDAYGRL+CFAEMK VL +M
Sbjct: 349 TLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVLGMM 408
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
+QRGCKPDK TYRTM RAYS GM NHAKE Q+L+ + + RPD
Sbjct: 409 EQRGCKPDKTTYRTMARAYSDGGMANHAKEIQELITTAEPS--KRTRPDL 456
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 268/350 (76%), Positives = 304/350 (86%), Gaps = 3/350 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
MLGKCKQ EKA+ELFQ M++EGC+ + +S+TALLSAY RSGL D+AFS+L MKN+PDCQ
Sbjct: 164 MLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSILNEMKNSPDCQ 223
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV+TYSILIKSCL+ FAF+K Q LLSDM T+GI+PNT+TYNT IDAYG+AKMFAEME
Sbjct: 224 PDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMESI 283
Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
LV ML++D C+PDVWTMN TLRAFG SGQ++TMEKCYEKFQ AGIQPSI TFNILLDSYG
Sbjct: 284 LVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYG 343
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
KA +EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG+LKQME+LFRLMRSERIKPSCV
Sbjct: 344 KAESYEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCV 403
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
TLCSLVRAYG AGK EK+ SVL ++NSDIMLDTVF+NCLVDAYGRL+CFAEMK VL +M
Sbjct: 404 TLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVLGMM 463
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
+QRGCKPDK TYRTM RAYS GM NHAKE Q+L+ + + RPD
Sbjct: 464 EQRGCKPDKTTYRTMARAYSDGGMANHAKEIQELITTAEPS--KRTRPDL 511
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069806|ref|XP_002303044.1| predicted protein [Populus trichocarpa] gi|222844770|gb|EEE82317.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/350 (75%), Positives = 306/350 (87%), Gaps = 14/350 (4%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
MLGKCKQP+KAH+LFQAM+DEGC +S+TALLSAYGRSGLFDKAFS++E MKNTPDC+
Sbjct: 149 MLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGRSGLFDKAFSIMEEMKNTPDCR 208
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV+TYSILIKSCL+ FAFDKVQ LLSDM + GIRPNTVT FAEME T
Sbjct: 209 PDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVT-------------FAEMEAT 255
Query: 121 LVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L++MLS+ DCEPDVWTMN T+RAFG SGQ++ ME CYEKFQSAGI+P+I TFNILLDSYG
Sbjct: 256 LMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLDSYG 315
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
KAG+++KMSAVMEYMQ+YHYSWTIVTYN+VIDAFGRAGDLKQMEYLFRLMRSERIKPSCV
Sbjct: 316 KAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 375
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
TLCSLVRAY AGKPEK+GSVLRFI+NSD+ LDTVFFNCLVDAYGRL+CFAEMK VLE+M
Sbjct: 376 TLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLELM 435
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
+++GCKPDKVTYRTM++AYS GM +HAK+ ++L+ ++ T K+PDF
Sbjct: 436 EEKGCKPDKVTYRTMIKAYSIKGMTSHAKKLRNLLGSVEVTRSPKKKPDF 485
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48730, chloroplastic; Flags: Precursor gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 259/350 (74%), Positives = 303/350 (86%), Gaps = 1/350 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
MLGKCKQPEKAHELFQ M++EGC N + +TAL+SAY RSG FD AF+LLE MK++ +CQ
Sbjct: 159 MLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQ 218
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV+TYSILIKS L+ FAFDKVQ LLSDM QGIRPNT+TYNTLIDAYG+AKMF EME T
Sbjct: 219 PDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMEST 278
Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L++ML ED C+PD WTMN TLRAFG +GQI+ ME CYEKFQS+GI+P+I TFNILLDSYG
Sbjct: 279 LIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYG 338
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
K+G+++KMSAVMEYMQKYHYSWTIVTYN+VIDAFGRAGDLKQMEYLFRLM+SERI PSCV
Sbjct: 339 KSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCV 398
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
TLCSLVRAYG A K +K+G VLRFI+NSDI LD VFFNCLVDAYGR++ FAEMKGVLE+M
Sbjct: 399 TLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELM 458
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
+++G KPDK+TYRTMV+AY +GM H KE +VE + E + +K+PDF
Sbjct: 459 EKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVESVGEAQVVVKKPDF 508
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9758872|dbj|BAB09426.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/350 (70%), Positives = 290/350 (82%), Gaps = 14/350 (4%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
MLGKCKQPEKAHELFQ M++EGC N + +TAL+SAY RSG FD AF+LLE MK++ +CQ
Sbjct: 159 MLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQ 218
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV+TYSILIKS L+ FAFDKVQ LLSDM QGIRPNT+T F EME T
Sbjct: 219 PDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTIT-------------FVEMEST 265
Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L++ML ED C+PD WTMN TLRAFG +GQI+ ME CYEKFQS+GI+P+I TFNILLDSYG
Sbjct: 266 LIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYG 325
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
K+G+++KMSAVMEYMQKYHYSWTIVTYN+VIDAFGRAGDLKQMEYLFRLM+SERI PSCV
Sbjct: 326 KSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCV 385
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
TLCSLVRAYG A K +K+G VLRFI+NSDI LD VFFNCLVDAYGR++ FAEMKGVLE+M
Sbjct: 386 TLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELM 445
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
+++G KPDK+TYRTMV+AY +GM H KE +VE + E + +K+PDF
Sbjct: 446 EKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVESVGEAQVVVKKPDF 495
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297792071|ref|XP_002863920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297309755|gb|EFH40179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/350 (70%), Positives = 289/350 (82%), Gaps = 14/350 (4%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
MLGKCKQPEKAHELFQ M++EGC N + +TALLSAY RSG FD AF+LLE MK++ +CQ
Sbjct: 162 MLGKCKQPEKAHELFQEMINEGCVVNHEVYTALLSAYSRSGRFDAAFTLLERMKSSHNCQ 221
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV+TYSILIKS L+ FAFDKV LLSDM GIRPNT+T F EME T
Sbjct: 222 PDVHTYSILIKSFLQVFAFDKVHDLLSDMRRLGIRPNTIT-------------FVEMEST 268
Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L++ML ED C+PD WTMN TLRAFG +GQI+ ME CYEKFQS+GI+P+I TFNILLDSYG
Sbjct: 269 LIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYG 328
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
K+G+++KMSAVMEYMQKYHYSWTIVTYN+VIDAFGRAGDLKQMEYLFRLM+SERI PSCV
Sbjct: 329 KSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIIPSCV 388
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
TLCSLVRAYG AGK +K+G VLRFI+NSDI LD VFFNCLVDAYGR++ FAEMKGVLE+M
Sbjct: 389 TLCSLVRAYGRAGKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELM 448
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
+++G KPDK+TYRTMV+AY +GM H KE + E + ET + +K+PDF
Sbjct: 449 EKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVGESVGETQVVLKKPDF 498
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | ||||||
| TAIR|locus:2081041 | 486 | PPR2 "pentatricopeptide repeat | 0.988 | 0.709 | 0.442 | 5.1e-74 | |
| TAIR|locus:2122561 | 563 | EMB2453 "EMBRYO DEFECTIVE 2453 | 0.876 | 0.543 | 0.292 | 4.3e-35 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.954 | 0.406 | 0.278 | 1.6e-33 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.982 | 0.397 | 0.244 | 1e-32 | |
| TAIR|locus:2157607 | 709 | AT5G42310 [Arabidopsis thalian | 0.879 | 0.433 | 0.294 | 1.3e-32 | |
| TAIR|locus:2178037 | 678 | AT5G39980 [Arabidopsis thalian | 0.928 | 0.477 | 0.24 | 7.8e-31 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.948 | 0.553 | 0.268 | 7.9e-31 | |
| TAIR|locus:2157732 | 723 | EMB1006 "embryo defective 1006 | 0.891 | 0.430 | 0.260 | 2.6e-30 | |
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.957 | 0.363 | 0.25 | 3.5e-30 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.936 | 0.397 | 0.256 | 7.5e-30 |
| TAIR|locus:2081041 PPR2 "pentatricopeptide repeat 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 153/346 (44%), Positives = 209/346 (60%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+LGK QP +A +LF M++EG + + +TALL+AY RS L D AFS+L+ MK+ P CQ
Sbjct: 133 LLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQ 192
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV TYS L+K+C+ A FD V +L +M + I PNTVT N ++ YGR F +ME
Sbjct: 193 PDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKV 252
Query: 121 LVKML-SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L ML S C+PDVWTMN L FGN G+ID ME YEKF++ GI+P TFNIL+ SYG
Sbjct: 253 LSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYG 312
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
K ++KMS+VMEYM+K + WT TYN +I+AF GD K ME F MRSE +K
Sbjct: 313 KKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTK 372
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T C L+ Y +AG K+ S ++ +I +T F+N ++ A + EM+ V M
Sbjct: 373 TFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRM 432
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMK 345
++R C D T+ MV AY GM + + +K+ + +A K
Sbjct: 433 KERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMDRTVATK 478
|
|
| TAIR|locus:2122561 EMB2453 "EMBRYO DEFECTIVE 2453" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 4.3e-35, P = 4.3e-35
Identities = 92/315 (29%), Positives = 157/315 (49%)
Query: 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCL----KAFAFDKVQAL 85
++ L+S G+ G A L MKN+ C+PD + Y+ LI + L KA A +KV+
Sbjct: 136 YSKLISVMGKKGQTRMAMWLFSEMKNS-GCRPDASVYNALITAHLHTRDKAKALEKVRGY 194
Query: 86 LSDMS-TQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144
L M + +PN VTYN L+ A+ ++ ++ + PDV+T N + A+G
Sbjct: 195 LDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYG 254
Query: 145 NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIV 204
+G I ME + +S +P I TFN+L+DSYGK FEKM + + + T+
Sbjct: 255 KNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLP 314
Query: 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264
T+N +I +G+A + + E++F+ M PS +T ++ YG+ G + + +
Sbjct: 315 TFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEV 374
Query: 265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK 324
SD +L N +++ Y R + E + PD TY+ + +AY+ MK
Sbjct: 375 GESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMK 434
Query: 325 NHAKEFQDLVEKMDE 339
++ Q L++KM++
Sbjct: 435 ---EQVQILMKKMEK 446
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 374 (136.7 bits), Expect = 1.6e-33, P = 1.6e-33
Identities = 93/334 (27%), Positives = 151/334 (45%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
GK +P++A ++ MV G + ++ +L+SAY R G+ D+A L M +PD
Sbjct: 325 GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEK-GTKPD 383
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
V TY+ L+ +A + ++ +M G +PN T+N I YG F EM
Sbjct: 384 VFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFD 443
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
++ PD+ T N L FG +G + +++ + AG P TFN L+ +Y + G
Sbjct: 444 EINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
FE+ V M + + TYN V+ A R G +Q E + M R KP+ +T C
Sbjct: 504 SFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYC 563
Query: 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302
SL+ AY + + + S+ + + I V LV + E + +++R
Sbjct: 564 SLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKER 623
Query: 303 GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
G PD T +MV Y M A D +++
Sbjct: 624 GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKE 657
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 1.0e-32, P = 1.0e-32
Identities = 85/348 (24%), Positives = 175/348 (50%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGL-FDKAFSLLEHMKNTPDCQP 61
G+ + E + EL M +E + ++ +++A R GL ++ L M++ QP
Sbjct: 187 GRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHE-GIQP 245
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
D+ TY+ L+ +C D+ + + M+ GI P+ TY+ L++ +G+ + ++ L
Sbjct: 246 DIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLL 305
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
+M S PD+ + N L A+ SG I + + Q+AG P+ NT+++LL+ +G++
Sbjct: 306 GEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQS 365
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
G ++ + + M+ + TYNI+I+ FG G K++ LF M E I+P T
Sbjct: 366 GRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETY 425
Query: 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301
++ A G G E +L+++ +DI+ + + +++A+G+ + E M +
Sbjct: 426 EGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHE 485
Query: 302 RGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
G P T+ +++ +++ G+ KE + ++ ++ ++ + R F
Sbjct: 486 VGSNPSIETFHSLLYSFARGGL---VKESEAILSRLVDSGIPRNRDTF 530
|
|
| TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 364 (133.2 bits), Expect = 1.3e-32, P = 1.3e-32
Identities = 91/309 (29%), Positives = 155/309 (50%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
E A + + M N+ F+ LL+ + G + K F +L+ MK+ +PD Y++
Sbjct: 391 ESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSI-GVKPDRQFYNV 449
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
+I + K D M ++GI P+ VT+NTLID + + E M
Sbjct: 450 VIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRG 509
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
C P T N + ++G+ + D M++ K +S GI P++ T L+D YGK+G F
Sbjct: 510 CLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAI 569
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
+E M+ + YN +I+A+ + G +Q FR+M S+ +KPS + L SL+ A+
Sbjct: 570 ECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAF 629
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
G + + +VL+++ + + D V + L+ A R+ F ++ V E M GCKPD+
Sbjct: 630 GEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDR 689
Query: 309 VTYRTMVRA 317
R+M+R+
Sbjct: 690 KA-RSMLRS 697
|
|
| TAIR|locus:2178037 AT5G39980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 7.8e-31, P = 7.8e-31
Identities = 78/325 (24%), Positives = 164/325 (50%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
+ KQ + AH LF M + +++ L++++G+ G+FD A S L+ M+ D+
Sbjct: 167 RAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDR-VSGDL 225
Query: 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123
YS LI+ + + K ++ S + GI P+ V YN++I+ YG+AK+F E L + +
Sbjct: 226 VLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKE 285
Query: 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183
M P+ + + L + + + + + + + T NI++D YG+
Sbjct: 286 MNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDM 345
Query: 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243
++ + ++K +V+YN ++ +G A + +LFRLM+ + I+ + VT +
Sbjct: 346 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT 405
Query: 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
+++ YG + EK ++++ + + I + + ++ ++ +G+ + + ++ G
Sbjct: 406 MIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSG 465
Query: 304 CKPDKVTYRTMVRAYSTNGMKNHAK 328
+ D+V Y+TM+ AY G+ HAK
Sbjct: 466 VEIDQVLYQTMIVAYERVGLMGHAK 490
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 7.9e-31, P = 7.9e-31
Identities = 90/335 (26%), Positives = 151/335 (45%)
Query: 5 CKQPEKAH--ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
C+ H +L M D GC + ++ L++ + G D+A L M ++ CQP+
Sbjct: 250 CRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS-GCQPN 308
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
V T++I+++S + + LL+DM +G P+ VT+N LI+ R + L
Sbjct: 309 VITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILE 368
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
KM C+P+ + N L F ++D + E+ S G P I T+N +L + K G
Sbjct: 369 KMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDG 428
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
E ++ + S ++TYN VID +AG + L MR++ +KP +T
Sbjct: 429 KVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYS 488
Query: 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302
SLV GK ++ + I + V FN ++ + + L M R
Sbjct: 489 SLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINR 548
Query: 303 GCKPDKVTYRTMVRAYSTNGMKNHAKEF-QDLVEK 336
GCKP++ +Y ++ + GM A E +L K
Sbjct: 549 GCKPNETSYTILIEGLAYEGMAKEALELLNELCNK 583
|
|
| TAIR|locus:2157732 EMB1006 "embryo defective 1006" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 343 (125.8 bits), Expect = 2.6e-30, P = 2.6e-30
Identities = 82/315 (26%), Positives = 167/315 (53%)
Query: 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT 65
+ ++ E+F+ M ++G + F L+ ++ GL ++A + M+ + +
Sbjct: 323 RSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKK-GIRSNTIV 381
Query: 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125
Y+ L+ + K+ ++V+ L ++M +G++P+ TYN L+DAY R +M ++ TL++ +
Sbjct: 382 YNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYAR-RMQPDIVETLLREM 440
Query: 126 SE-DCEPDVWTMNCTLRAFGNSGQIDTMEK-CYEKFQSAGIQPSINTFNILLDSYGKAGH 183
+ EP+V + C + A+G + ++ M + + + G++PS +++ L+ +Y +G
Sbjct: 441 EDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGW 500
Query: 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243
EK A E M K ++ TY V+DAF R+GD ++ +++LM E+IK + +T +
Sbjct: 501 HEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNT 560
Query: 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
L+ + G + V+ + + +N L++AY R A++ +L+ M
Sbjct: 561 LLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALN 620
Query: 304 CKPDKVTYRTMVRAY 318
KPD +TY TM+ A+
Sbjct: 621 LKPDSITYSTMIYAF 635
|
|
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 344 (126.2 bits), Expect = 3.5e-30, P = 3.5e-30
Identities = 84/336 (25%), Positives = 161/336 (47%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
LG+ + A +F+ G +F+AL+SAYGRSGL ++A S+ MK +P
Sbjct: 243 LGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY-GLRP 301
Query: 62 DVNTYSILIKSCLKA-FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
++ TY+ +I +C K F +V +M G++P+ +T+N+L+ R ++
Sbjct: 302 NLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNL 361
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
+M + E DV++ N L A GQ+D + + I P++ +++ ++D + K
Sbjct: 362 FDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAK 421
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
AG F++ + M+ + V+YN ++ + + G ++ + R M S IK VT
Sbjct: 422 AGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVT 481
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
+L+ YG GK +++ V + ++ + + ++ L+D Y + + E + +
Sbjct: 482 YNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541
Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
G + D V Y ++ A NG+ A D + K
Sbjct: 542 SAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTK 577
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 7.5e-30, P = 7.5e-30
Identities = 84/328 (25%), Positives = 152/328 (46%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+ GK +A + + M + C A++ ++ L++AY R+G +A ++E M
Sbjct: 325 VFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIE-MMTKKGVM 383
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
P+ TY+ +I + KA D+ L M G PNT TYN ++ G+ EM
Sbjct: 384 PNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKM 443
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
L M S C P+ T N L GN G + + + + +S G +P +TFN L+ +YG+
Sbjct: 444 LCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGR 503
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
G S + M + ++ + TYN +++A R GD + E + M+S+ KP+ +
Sbjct: 504 CGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETS 563
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
+++ Y G + + I I + L+ A + + A + + +
Sbjct: 564 YSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFK 623
Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAK 328
+ G KPD V + +M+ ++ N M + A+
Sbjct: 624 KHGYKPDMVIFNSMLSIFTRNNMYDQAE 651
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FKC3 | PP424_ARATH | No assigned EC number | 0.74 | 1.0 | 0.6870 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00002494 | hypothetical protein (388 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 349 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-22 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-19 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 7e-22
Identities = 73/317 (23%), Positives = 143/317 (45%), Gaps = 3/317 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
+ A + + + + G A+ + +T L+S +SG D F + M N + +V+T+
Sbjct: 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGA 512
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
LI C +A K M ++ ++P+ V +N LI A G++ L +M +E
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572
Query: 129 --CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186
+PD T+ ++A N+GQ+D ++ Y+ I+ + + I ++S + G ++
Sbjct: 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632
Query: 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246
++ + M+K V ++ ++D G AGDL + + + R + IK V+ SL+
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306
A +A +K + I + + N L+ A + VL M++ G P
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752
Query: 307 DKVTYRTMVRAYSTNGM 323
+ +TY ++ A
Sbjct: 753 NTITYSILLVASERKDD 769
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 7e-20
Identities = 71/281 (25%), Positives = 122/281 (43%), Gaps = 18/281 (6%)
Query: 28 QSFTALLSAYGRSGLFDKAFSLLEHMKN---TPDCQPDVNTYSILIKSCLKAFAFDKVQA 84
+F L+S S D A +L ++ DC+ Y+ LI +C K+ D +
Sbjct: 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK----LYTTLISTCAKSGKVDAMFE 493
Query: 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144
+ +M G+ N T+ LID RA A+ M S++ +PD N + A G
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 145 NSGQIDTMEKCYE-----KFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY 199
SG +D + ++ K ++ I P T L+ + AG ++ V + + +Y+
Sbjct: 554 QSGAVD---RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 200 SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259
T Y I +++ + GD ++ M+ + +KP V +LV GHAG +K
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
+L+ I L TV ++ L+ A K K LE+ +
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAK---NWKKALELYE 708
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 1e-19
Identities = 75/317 (23%), Positives = 148/317 (46%), Gaps = 9/317 (2%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
K + + E+F MV+ G +AN +F AL+ R+G KAF M+ + + +PD
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR-SKNVKPDR 542
Query: 64 NTYSILIKSCLKAFAFDKVQALLSDMS--TQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
++ LI +C ++ A D+ +L++M T I P+ +T L+ A A + +
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ-VDRAKEV 601
Query: 122 VKMLSE---DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178
+M+ E P+V+T+ + + G D Y+ + G++P F+ L+D
Sbjct: 602 YQMIHEYNIKGTPEVYTI--AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659
Query: 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238
G AG +K +++ +K V+Y+ ++ A A + K+ L+ ++S +++P+
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719
Query: 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298
T+ +L+ A + K VL + + +T+ ++ L+ A R +L
Sbjct: 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779
Query: 299 MQQRGCKPDKVTYRTMV 315
++ G KP+ V R +
Sbjct: 780 AKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 9e-11
Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 10/240 (4%)
Query: 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY 156
+ ++N L+ Y +A F E +ML PDV+T C LR G + + +
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216
G + ++ N L+ Y K G V + M + +++N +I +
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFEN 266
Query: 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLR-FIDNSDIMLDTVF 275
G+ + LF MR + P +T+ S++ A G E+LG + ++ + +D
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGD-ERLGREMHGYVVKTGFAVDVSV 325
Query: 276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335
N L+ Y L + E + V M+ + D V++ M+ Y NG+ + A E L+E
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALME 381
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
G +KA E+ Q +G T S+++L+ A + + KA L E +K+ +P
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPT 718
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
V+T + LI + + K +LS+M G+ PNT+TY+ L+ A R ++ L L+
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA-DVGLDLL 777
Query: 123 KMLSEDC 129
ED
Sbjct: 778 SQAKEDG 784
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 2e-10
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR 110
PDV TY+ LI K ++ L ++M +GI+PN TY+ LID +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 2e-10
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK 75
+ ++ L+ Y + G ++A L MK +P+V TYSILI K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 7e-09
Identities = 76/343 (22%), Positives = 131/343 (38%), Gaps = 35/343 (10%)
Query: 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEH-MKNTPDCQPDVNTYSILIK 71
ELF M + D + + T+++SA G D+ H DV+ + LI+
Sbjct: 274 ELFFTMRELSVDPDLMTITSVISACELLG--DERLGREMHGYVVKTGFAVDVSVCNSLIQ 331
Query: 72 SCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED-CE 130
L ++ + + + S M T+ V++ +I Y + + L ++ +D
Sbjct: 332 MYLSLGSWGEAEKVFSRMETKDA----VSWTAMISGYEK-NGLPDKALETYALMEQDNVS 386
Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAV 190
PD T+ L A G +D K +E + G+ + N L++ Y K +K V
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446
Query: 191 MEYM-QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249
+ +K SWT +I + FR M +KP+ VTL + + A
Sbjct: 447 FHNIPEKDVISWT-----SIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACA 500
Query: 250 HAGK----PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305
G E VLR + I D N L+D Y ++C M Q +
Sbjct: 501 RIGALMCGKEIHAHVLR----TGIGFDGFLPNALLDLY--VRC-GRMNYAWN--QFNSHE 551
Query: 306 PDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD 348
D V++ ++ Y +G + A E + + + PD
Sbjct: 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV------NPD 588
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 1e-08
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215
P + T+N L+D Y K G E+ + M+K + TY+I+ID +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 1e-08
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 96 PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN 145
P+ VTYNTLID Y + E +M +P+V+T + +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 2e-08
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
+VTYN +ID + + G +++ LF M+ IKP+ T L+
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 3e-08
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY 318
D V +N L+D Y + E + M++RG KP+ TY ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 34/233 (14%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
M KCK +KA E+F + ++ + S+T++++ + +A M T +
Sbjct: 433 MYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT--LK 486
Query: 61 PDVNTYSILIKSCLKAFAFD-----KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA 115
P+ T + +C + A L + + G PN L+D Y R
Sbjct: 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA-----LLDLYVRC---G 538
Query: 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL 175
M + S E DV + N L + G+ + + + +G+ P TF LL
Sbjct: 539 RMNYAWNQFNS--HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
Query: 176 DSYGKAG-------HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ 221
+ ++G +F M +KY + + Y V+D GRAG L +
Sbjct: 597 CACSRSGMVTQGLEYFHSME------EKYSITPNLKHYACVVDLLGRAGKLTE 643
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 1e-06
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238
VTYN +ID +AG +++ LF+ M+ I+P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 53/278 (19%), Positives = 97/278 (34%), Gaps = 103/278 (37%)
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
P ++T+++L+ C + D +L + G++ + Y TLI
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST------------- 481
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
C SG++D M + + + +AG++ +++TF L+D +
Sbjct: 482 -----------------CA-----KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
AG K AFG G +MRS+ +KP V
Sbjct: 520 AGQVAK-------------------------AFGAYG----------IMRSKNVKPDRVV 544
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
+L+ A G +G ++ VL AEMK +
Sbjct: 545 FNALISACGQSGAVDRAFDVL----------------------------AEMKA-----E 571
Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338
PD +T +++A + G + AKE ++ + +
Sbjct: 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-06
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
PDV T N + + G+++ K + + + GI+P++ T++IL+D K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 5e-06
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV 133
VTYNTLID +A E +M EPDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 58/287 (20%), Positives = 117/287 (40%), Gaps = 24/287 (8%)
Query: 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY 66
+A LF+ M ++G DA ++F +L A G L + T D
Sbjct: 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG-DTFVS 262
Query: 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY---GRAK----MFAEMEL 119
LI K + + + M TV +N+++ Y G ++ ++ EM
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
+ V + D +T + +R F ++ ++ + G I L+D Y
Sbjct: 319 SGVSI-------DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
K G E V + M + + ++++N +I +G G + +F M +E + P+ V
Sbjct: 372 KWGRMEDARNVFDRMPRKN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFI-DNSDIMLDTVFFNCLVDAYGR 285
T +++ A ++G E+ + + + +N I + + C+++ GR
Sbjct: 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
|
Length = 697 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 7e-06
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP 236
+ TYN ++ A +AGD + M++ +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (96), Expect = 3e-05
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%)
Query: 92 QGIRPNTVTYNTLIDAYGRA-------KMFAEME 118
+G++P+ VTYNTLID RA ++ EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 65/320 (20%), Positives = 131/320 (40%), Gaps = 46/320 (14%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
M KC E A +F M + T ++ ++L+ Y G ++A L M+++
Sbjct: 268 MYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GVS 322
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
D T+SI+I+ + + + + + G + V L+D Y + +
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
+M ++ + + N + +GN G+ + +E+ + G+ P+ TF +L +
Sbjct: 383 FDRMPRKN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438
Query: 181 AGHFEKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC- 238
+G E+ + + M + H + Y +I+ GR G L + + ++R KP+
Sbjct: 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA---YAMIRRAPFKPTVN 495
Query: 239 -----VTLCSLVRAYGHAGK----------PEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283
+T C + + G+ PEKL + + V N L ++
Sbjct: 496 MWAALLTACRIHKNL-ELGRLAAEKLYGMGPEKLNNYV------------VLLN-LYNSS 541
Query: 284 GRLKCFAEMKGVLEVMQQRG 303
GR AE V+E ++++G
Sbjct: 542 GRQ---AEAAKVVETLKRKG 558
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 60/337 (17%), Positives = 118/337 (35%), Gaps = 49/337 (14%)
Query: 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG 93
L A GR +A L E ++ +TY L+++C+ + V+A+ + + G
Sbjct: 97 LVACGR---HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 94 IRPNTVTYNTLIDAYGRAKMFAEME------------------------------LTLVK 123
P+ N ++ + + M + L +
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213
Query: 124 MLSE---DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
+ E D EP + + LRA G ++ + G+ L+D Y K
Sbjct: 214 EMWEDGSDAEPRTFVV--MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
G E V + M + T V +N ++ + G ++ L+ MR + T
Sbjct: 272 CGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
++R + E + + LD V LVD Y + + + V + M
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337
++ + +++ ++ Y +G A E + E+M
Sbjct: 388 RK----NLISWNALIAGYGNHGRGTKAVE---MFERM 417
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL 261
T+ T+N+++ + D+ + RL++ +K C +L+ +GK + + V
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 262 RFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321
+ N+ + + F L+D R A+ G +M+ + KPD+V + ++ A +
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555
Query: 322 GMKNHAKEFQDLVEKMDET 340
G + A F L E ET
Sbjct: 556 GAVDRA--FDVLAEMKAET 572
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 2e-04
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 22 GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMK 54
G + ++ L+ R+G D+A LL+ M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 2e-04
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234
VTYN +I + +AG L++ LF+ M+ + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 4e-04
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307
+N L+D + E + + M++RG +PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 5e-04
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGR 39
K + E+A +LF M G N +++ L+ +
Sbjct: 13 YCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.001
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 29 SFTALLSAYGRSGLFDKAFSLLEHMK 54
++ +L+S Y ++G ++A L + MK
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.002
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230
+VTYN +ID RAG + + L M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
++ L+ ++G ++A L + MK +PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKER-GIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.5 bits (80), Expect = 0.003
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNT 56
+++ ALL A ++G D A ++LE MK +
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKAS 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
VTYN+LI Y +A E +M +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.95 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.78 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.77 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.77 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.76 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.72 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.71 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.71 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.71 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.7 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.67 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.64 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.62 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.61 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.6 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.57 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.57 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.57 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.56 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.56 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.56 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.55 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.54 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.54 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.52 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.52 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.5 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.47 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.46 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.44 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.4 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.38 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.37 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.37 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.34 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.34 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.33 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.32 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.32 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.27 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.27 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.24 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.24 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.23 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.17 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.15 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.13 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.13 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.12 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.09 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.06 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.02 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.02 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.02 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.0 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.99 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.99 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.99 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.91 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.9 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.88 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.88 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.86 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.86 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.86 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.86 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.85 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.85 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.84 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.84 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.82 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.81 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.76 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.75 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.75 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.75 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.75 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.72 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.72 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.71 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.69 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.68 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.67 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.63 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.57 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.56 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.55 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.51 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.45 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.44 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.44 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.43 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.41 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.41 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.41 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.4 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.38 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.38 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.36 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.32 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.3 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.3 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.27 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.24 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.21 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.12 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.11 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.11 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.11 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.08 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.06 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.05 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.04 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 98.02 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.02 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.02 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.0 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.0 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.0 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.99 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.98 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.97 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.95 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.94 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.92 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.91 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.9 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.88 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.87 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.87 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.87 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.85 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.85 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.82 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.76 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.74 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.73 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.73 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.7 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.7 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.64 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.63 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.6 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.59 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.58 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.58 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.57 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.56 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.54 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.52 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.48 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.47 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.47 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.39 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.34 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.31 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.31 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.3 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.29 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.28 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.26 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.25 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.24 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.19 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.15 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.09 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.09 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.09 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.03 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.98 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.93 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.93 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.88 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.81 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.71 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.69 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.68 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.53 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.5 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.48 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.48 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.47 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.45 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.44 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.41 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.37 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.31 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.19 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.13 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.05 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 96.01 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.94 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.93 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.93 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.92 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.91 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.85 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.8 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.72 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.7 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.64 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.61 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.55 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.51 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.44 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.43 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.37 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.22 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 95.2 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.19 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.15 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.11 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.01 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.99 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.94 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.93 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.91 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.9 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.89 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.87 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 94.86 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.82 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.71 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.65 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.31 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.24 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.19 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.17 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.1 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.09 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.93 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.91 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 93.91 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.84 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.78 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.77 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.68 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.66 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.6 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.5 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.47 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.43 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.37 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.29 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.18 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.96 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.93 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.83 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.69 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.68 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.67 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.58 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.35 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.25 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.15 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.12 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.06 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.04 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.88 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.8 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.37 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.0 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.81 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.5 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.41 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.41 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.29 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.2 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.96 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.72 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.57 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.52 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.07 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.96 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.87 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.73 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 88.64 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.58 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.49 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.88 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.63 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.56 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.51 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.43 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.15 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 87.13 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 87.01 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.87 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.84 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 84.43 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.12 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 83.76 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.23 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 83.16 | |
| PF13934 | 226 | ELYS: Nuclear pore complex assembly | 82.64 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 82.58 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.54 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 82.34 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 82.24 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.74 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.73 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 81.51 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 81.13 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 80.98 | |
| cd00280 | 200 | TRFH Telomeric Repeat binding Factor or TTAGGG Rep | 80.84 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.39 | |
| PF14689 | 62 | SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do | 80.14 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-59 Score=420.79 Aligned_cols=336 Identities=21% Similarity=0.330 Sum_probs=327.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. ++.||..+|+.+|.+|++.|++++
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHH
Confidence 6789999999999999999999999999999999999999999999999999987 679999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhc--cCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS--EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999976 578999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH
Q 018882 160 QSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (349)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018882 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS 319 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 319 (349)
+|+.++.+|++.|++++|.++|+.|.+.++.||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|.
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhhhHHHHHHHHHHh
Q 018882 320 TNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~ 338 (349)
+.|+.+.|.++++.+.+..
T Consensus 766 k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcC
Confidence 9999999999999887654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-58 Score=412.91 Aligned_cols=336 Identities=23% Similarity=0.340 Sum_probs=321.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCC--------------------------------CChhhHHHHHHHHHcCCChhHHHHH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCD--------------------------------ANTQSFTALLSAYGRSGLFDKAFSL 49 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~ 49 (349)
|++.|++++|+++|++|.+.|+. |+..+|+.++.+|++.|+++.|.++
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~l 459 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRV 459 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34678888888888888877643 6888999999999999999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCC
Q 018882 50 LEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129 (349)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 129 (349)
|+.|.+. ++.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 460 f~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv 538 (1060)
T PLN03218 460 LRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538 (1060)
T ss_pred HHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 9999987 679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 018882 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS--AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN 207 (349)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 207 (349)
.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+.++.|+..+|+
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 99999999999999999999999999999986 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC
Q 018882 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHh
Q 018882 288 CFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 288 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++++.|.+.+
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999887543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-52 Score=370.74 Aligned_cols=318 Identities=16% Similarity=0.264 Sum_probs=182.4
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++
T Consensus 133 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~ 207 (697)
T PLN03081 133 CIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYRE 207 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHH
Confidence 34556666666666666666666666677777777777777777777776664 3566677777777777777777
Q ss_pred HHHHHHHHHhcCCCCchHHH-----------------------------------HHHHHHHhccCcHHHHHHHHHHHhc
Q 018882 82 VQALLSDMSTQGIRPNTVTY-----------------------------------NTLIDAYGRAKMFAEMELTLVKMLS 126 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~-----------------------------------~~l~~~~~~~~~~~~a~~~~~~~~~ 126 (349)
|.++|++|.+.|+.|+..+| +.|+.+|++.|++++|.++|++|.
T Consensus 208 A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~- 286 (697)
T PLN03081 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP- 286 (697)
T ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-
Confidence 77777777666655555554 444445555555555555555543
Q ss_pred cCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhH
Q 018882 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY 206 (349)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 206 (349)
.+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|
T Consensus 287 ---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 287 ---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred ---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 23445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc
Q 018882 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL 286 (349)
Q Consensus 207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 286 (349)
+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 555555555555555555555553 2444555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCchhhhHHHHH
Q 018882 287 KCFAEMKGVLEVMQQ-RGCKPDKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 287 g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
|..++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|+.++|.++++
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 555555555555543 3555555555555555555555555555443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=371.62 Aligned_cols=323 Identities=19% Similarity=0.294 Sum_probs=292.1
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCC------------------------
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTP------------------------ 57 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------ 57 (349)
|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 5677777777777777743 577777777777777777777777777776542
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc
Q 018882 58 ----------DCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 58 ----------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
++.||..+|+.++.+|++.|++++|.++|++|. .+|..+||.++.+|++.|++++|.++|++|.+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 334566667888889999999999999999986 458999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 018882 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN 207 (349)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 207 (349)
|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.+ ||..+||
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n 395 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWN 395 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999964 6899999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh-CCCCchHHHHHHHHHHHHhc
Q 018882 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN-SDIMLDTVFFNCLVDAYGRL 286 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~ 286 (349)
.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .++.|+..+|+.++.+|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999975 69999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 287 KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 287 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
|++++|.+++++| ++.|+..+|++++.+|...|+.+.|.++++.+.++.+
T Consensus 476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 9999999998765 6789999999999999999999999999998876654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-51 Score=371.48 Aligned_cols=217 Identities=18% Similarity=0.250 Sum_probs=120.4
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
|+++|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|... ++.||..+|+.++.+|++.|+.+.
T Consensus 232 y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHH
Confidence 4556666666666666542 45566666666666666666666666666554 446666666666666666666666
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66666666666666666666666666655555555555555553 34445555555555555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 018882 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|+
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555555555555555555555444444444444444444444444444444444333
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-50 Score=365.20 Aligned_cols=324 Identities=19% Similarity=0.215 Sum_probs=235.8
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|+++.|.+++..+.+. |+.||..+|+.++.+|++.|++++
T Consensus 263 ~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHH
Confidence 5678889999999999988888888888888888888888888888888888776 567888888888888888888888
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+
T Consensus 342 A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 342 AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 888888775 3577788888888888888888888888887777788888888888888888888888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh----------
Q 018882 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS---------- 231 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------- 231 (349)
.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|..
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~ 493 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLI 493 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHH
Confidence 77777777777777777777777777777766643 2333444444444444444333333333321
Q ss_pred ------------------------CC------------------------------CCCcHHHHHHHHHHHHhcCChhhH
Q 018882 232 ------------------------ER------------------------------IKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 232 ------------------------~~------------------------------~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
.| ..||..+|+.+|.+|++.|+.++|
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A 573 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMA 573 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHH
Confidence 11 134566777777777777777777
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHH
Q 018882 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ-QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (349)
.++|++|.+.|+.||..+|+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|+.++.+|.+.|++++|.++++.+
T Consensus 574 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 7777777777777777777777777777777777777777776 4567777777777777777777777777666654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-24 Score=202.47 Aligned_cols=320 Identities=13% Similarity=0.014 Sum_probs=198.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
+.|++++|.++++.+.+.. +.+...|..+..++...|++++|...|+.+.+.. +.+...+..+..++.+.|++++|.
T Consensus 579 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHH
Confidence 4455555555555555432 3345555555555666666666666665555432 334445555555555566666666
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
..++++.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|.+.+..+.+.+
T Consensus 656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 6666555542 2245555556666666666666666666665543 3444555556666666666666666666666543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018882 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (349)
|+..++..+..++.+.|++++|...++.+.+..+ .+...+..+...+...|++++|...|+++.+.. +.+..++..
T Consensus 734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 809 (899)
T TIGR02917 734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNN 809 (899)
T ss_pred --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3335555566666666777777666666665543 356666666677777777777777777776554 455666677
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 323 (349)
+...+...|+ ++|...++.+.+... -++.++..+...+...|++++|..+++++.+.+.. +..++..+..++.+.|+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCC
Confidence 7777777777 667777776665432 24556666777777778888888888887776543 67777777778888888
Q ss_pred hhhhHHHHHHHH
Q 018882 324 KNHAKEFQDLVE 335 (349)
Q Consensus 324 ~~~a~~~~~~~~ 335 (349)
+++|.++++.+.
T Consensus 887 ~~~A~~~~~~~~ 898 (899)
T TIGR02917 887 KAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHh
Confidence 888877777653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-24 Score=181.52 Aligned_cols=295 Identities=11% Similarity=0.054 Sum_probs=179.4
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhc
Q 018882 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN---TVTYNTLIDAYGR 110 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 110 (349)
...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|..
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 334556666777777777776652 34455666666666777777777777776665432111 2345666666677
Q ss_pred cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHH
Q 018882 111 AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS----INTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 186 (349)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777766542 34455666666777777777777777777665542221 1234455556666777777
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
|...++++.+.... +...+..+...+.+.|++++|..+++++.+.+......++..++.++...|++++|...++.+.+
T Consensus 199 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777766654322 34556666666677777777777777766543222234556666667777777777777776665
Q ss_pred CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCchhhhHHHHHHHHH
Q 018882 267 SDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST---NGMKNHAKEFQDLVEK 336 (349)
Q Consensus 267 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 336 (349)
.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++...++.+.+
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 43 34444566666677777777777777766654 4666666666655543 3455566655555544
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-23 Score=194.88 Aligned_cols=324 Identities=14% Similarity=-0.001 Sum_probs=143.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
+.|++++|.++++.+... .+++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.
T Consensus 443 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred hcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555555555443 23344455555555555555555555555544432 223333444444444444444444
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccC---------------------------------CC
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED---------------------------------CE 130 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------------~~ 130 (349)
+.++++...+ +.+..++..+...+.+.|+.++|...++++...+ .+
T Consensus 520 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 520 QRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 4444444332 1233333333344434444444444433333221 12
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 018882 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
.+...|..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... .+..++..++
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 233344444444444444444444444444332 22333344444444444444444444444443321 1334444444
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++.+.... |+..++..++..+.+.|+++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 44444444444444444444332 2333444444444455555555555555444432 22233444444555555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 291 EMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 291 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
+|.+.++.+.+.. +.+...+..+...|...|++++|.+.++.+.+.
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 5555555544432 224444555555555555555555555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-23 Score=174.71 Aligned_cols=309 Identities=17% Similarity=0.136 Sum_probs=257.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHhcCChh
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP--DVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~ 80 (349)
...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+...+ ....+..+...+.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 45789999999999999874 45677899999999999999999999999987632111 1256788899999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcc----hhhHHHHHHHHHccCCHHHHHHHH
Q 018882 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD----VWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
+|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+...|++++|.+.+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998863 45778999999999999999999999999987653332 224556777888999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 018882 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (349)
+++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|...|++++|...++.+.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 9998864 34566788889999999999999999999987654434567889999999999999999999999876 45
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018882 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR---LKCFAEMKGVLEVMQQRGCKPDKVTYRT 313 (349)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 313 (349)
+...+..++..+.+.|++++|..+++.+.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~---- 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR---- 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC----
Confidence 6667788999999999999999999998876 4788888888887775 568999999999999988888776
Q ss_pred HHHHHHhcCch
Q 018882 314 MVRAYSTNGMK 324 (349)
Q Consensus 314 l~~~~~~~g~~ 324 (349)
..|.++|..
T Consensus 355 --~~c~~cg~~ 363 (389)
T PRK11788 355 --YRCRNCGFT 363 (389)
T ss_pred --EECCCCCCC
Confidence 346666643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-21 Score=172.03 Aligned_cols=328 Identities=9% Similarity=-0.025 Sum_probs=269.3
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
.+.|++++|..+++...... +-+...+..++.+....|+++.|.+.|+++.... |.+...+..+...+...|++++|
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHH
Confidence 46899999999999998863 4456677777788888999999999999999874 55677888889999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
...++++.... +.+...+..+..++...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+.
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 99999998863 346778888999999999999999999988765422 23333333 3478899999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCcH
Q 018882 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ----MEYLFRLMRSERIKPSC 238 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~ 238 (349)
...++...+..+...+...|++++|...++++...... +...+..+...+...|++++ |...++...+.. +.+.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~ 284 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNV 284 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCH
Confidence 43344555566678889999999999999999887643 67888889999999999986 899999988764 4567
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHH
Q 018882 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK-VTYRTMVRA 317 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~ 317 (349)
..+..+...+...|++++|...++.+....+. +...+..+..++.+.|++++|...++++... .|+. ..+..+..+
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~a 361 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 88999999999999999999999999887643 5667888999999999999999999999876 3444 334445678
Q ss_pred HHhcCchhhhHHHHHHHHHHhhhh
Q 018882 318 YSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
+...|+.++|...++...+..+..
T Consensus 362 l~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhChhh
Confidence 899999999999999888776543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-20 Score=162.61 Aligned_cols=329 Identities=10% Similarity=-0.019 Sum_probs=215.3
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++|
T Consensus 138 ~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 138 YRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred HHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 4578888888888888775 4677778888888888888888888888887763 44566777777777777777777
Q ss_pred HHHHHHH-------------------------------------------------------------------------
Q 018882 83 QALLSDM------------------------------------------------------------------------- 89 (349)
Q Consensus 83 ~~~~~~~------------------------------------------------------------------------- 89 (349)
...|...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (615)
T TIGR00990 214 LLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNG 293 (615)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccc
Confidence 5433222
Q ss_pred ---------------------------HhcC-CCC-chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHH
Q 018882 90 ---------------------------STQG-IRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTL 140 (349)
Q Consensus 90 ---------------------------~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (349)
...+ ..| ....++.+...+...|++++|...+++..... +.....|..+.
T Consensus 294 ~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la 372 (615)
T TIGR00990 294 QLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRA 372 (615)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHH
Confidence 1111 011 12234444445555666666666666666442 22244556666
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChH
Q 018882 141 RAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLK 220 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 220 (349)
..+...|++++|...++++.+.. +.+..+|..+...+...|++++|...|++..+..+. +...+..+...+.+.|+++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHH
Confidence 66667777777777777766653 335566666777777777777777777777665432 4556666677777777777
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchH------HHHHHHHHHHHhcCCHHHHHH
Q 018882 221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT------VFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~ 294 (349)
+|...++...... +.+...++.+...+...|++++|...++.........+. ..++..+..+...|++++|..
T Consensus 451 eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~ 529 (615)
T TIGR00990 451 SSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAEN 529 (615)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHH
Confidence 7777777766542 344566777777777778888888777776654322111 112222223344578888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 295 VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 295 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
++++....+. .+...+..+...+.+.|++++|.++++...++.++
T Consensus 530 ~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 530 LCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 8887776542 24456788888899999999999988888776553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-19 Score=159.66 Aligned_cols=292 Identities=10% Similarity=0.014 Sum_probs=241.6
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
...|++++|++.|+++.+.. |.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|
T Consensus 87 l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHH
Confidence 45899999999999999874 5567889999999999999999999999998863 45677888999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
...++.+...... +...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...++++.+.
T Consensus 164 ~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 164 ISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999988776432 33344333 347889999999999999887653344455556677889999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 018882 163 GIQPSINTFNILLDSYGKAGHFEK----MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (349)
. +.+...+..+...+...|++++ |...+++..+..+. +...+..+...+...|++++|...+++..+.. +.+.
T Consensus 242 ~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~ 318 (656)
T PRK15174 242 G-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLP 318 (656)
T ss_pred C-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 5 4467888889999999999986 89999999887644 77889999999999999999999999998765 4456
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 303 (349)
..+..+..++...|++++|...++.+...... +...+..+..++...|++++|...|++..+..
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 67788899999999999999999999876432 23344556778999999999999999998763
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-18 Score=162.27 Aligned_cols=328 Identities=13% Similarity=0.045 Sum_probs=212.3
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHH------------HHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS------------ILI 70 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~ll 70 (349)
...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+.....++...|. ...
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 45799999999999998864 45788899999999999999999999999887632122222221 223
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHH------------
Q 018882 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC------------ 138 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------ 138 (349)
..+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHH
Confidence 46678899999999999998874 3466677788899999999999999999988653 122222222
Q ss_pred ------------------------------HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018882 139 ------------------------------TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188 (349)
Q Consensus 139 ------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 188 (349)
+...+...|++++|.+.+++..+.. +-+...+..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 2233456788888999888888764 335667778888899999999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC------------------------------------
Q 018882 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE------------------------------------ 232 (349)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------------ 232 (349)
..++++.+.... +...+..+...+...++.++|...++.+...
T Consensus 516 ~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 999888764422 2322222222222333333333332221100
Q ss_pred ---CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 018882 233 ---RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309 (349)
Q Consensus 233 ---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 309 (349)
..+.+...+..+...+...|++++|...++.+.+..+ .+...+..++..|...|++++|.+.++...... +.+..
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~ 672 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLN 672 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChH
Confidence 0123334455556666666666666666666665543 245566666666666666666666666555432 11344
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 310 TYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
.+..+..++...|++++|.++++.+.+.
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 4555555666666666666666665544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-18 Score=159.54 Aligned_cols=321 Identities=12% Similarity=0.051 Sum_probs=215.1
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...+. .++.++|
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcCHHHH
Confidence 46799999999999999874 4567788889999999999999999999998763 344555555544442 2344555
Q ss_pred HHHHHHHHhcCCC--------CchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHH
Q 018882 83 QALLSDMSTQGIR--------PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEK 154 (349)
Q Consensus 83 ~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 154 (349)
..+++.+...... .....+..+...+...|++++|.+.+++..+.. +-+...+..+...+.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5444433221000 001122333444444555555555555554432 2233344444445555555555555
Q ss_pred HHHHHHhcCCCCCHHHHH--------------------------------------------HHHHHHHhcCCHHHHHHH
Q 018882 155 CYEKFQSAGIQPSINTFN--------------------------------------------ILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~--------------------------------------------~l~~~~~~~~~~~~a~~~ 190 (349)
.++++.+.. +.+...+. .+...+...|+.++|..+
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 555544332 11222221 234445566666666666
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018882 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM 270 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (349)
++. .+.+...+..+...+.+.|++++|...|+...+.. +.+...+..++..+...|++++|...++.+.+...
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p- 668 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN- 668 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-
Confidence 651 23456677788899999999999999999998765 55778899999999999999999999998877543
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C---CHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK--P---DKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
.+...+..+..++...|++++|.++++.+...... | +...+..+...+...|++++|.+.++....
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666777888999999999999999999876322 2 224566677889999999999999998754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-17 Score=146.79 Aligned_cols=304 Identities=13% Similarity=-0.015 Sum_probs=242.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY 108 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (349)
.+......+.+.|++++|+..|++.... .|+...|..+..++.+.|++++|+..++...+.. +.+...|..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3556777899999999999999999876 5788889999999999999999999999998874 33667888899999
Q ss_pred hccCcHHHHHHHHHHHhccCC-----------------------------CcchhhHHHHHH------------------
Q 018882 109 GRAKMFAEMELTLVKMLSEDC-----------------------------EPDVWTMNCTLR------------------ 141 (349)
Q Consensus 109 ~~~~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~------------------ 141 (349)
...|++++|+..+......+. +++...+..+..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 999999999876544321110 000000000000
Q ss_pred ------------H------HHccCCHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018882 142 ------------A------FGNSGQIDTMEKCYEKFQSAG-I-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW 201 (349)
Q Consensus 142 ------------~------~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 201 (349)
. ....+++++|.+.|+...+.+ . +.....+..+...+...|++++|...+++..+..+.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~- 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR- 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Confidence 0 012357888999999988764 2 234567888888889999999999999999886533
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
....|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++...+... .+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHH
Confidence 46788888999999999999999999998764 45678899999999999999999999999988764 36777888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 282 AYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
++.+.|++++|...|++..... +.+...+..+..++...|++++|.+.++...++.+.
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 9999999999999999998763 235788899999999999999999999998887653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=143.49 Aligned_cols=326 Identities=12% Similarity=0.094 Sum_probs=226.7
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHH-HHHHHHHhcCChhH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS-ILIKSCLKAFAFDK 81 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~ 81 (349)
-..|++++|+..++.+.+.. +..+..|..+..++...|+.+.|.+.|....+. .|+..... .+...+...|+..+
T Consensus 127 kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhcccch
Confidence 35688999999999998873 446788989999999999999888888887765 34433322 22222333455555
Q ss_pred HHHHHHHHHhcC--------------------------------CCCc-hHHHHHHHHHHhccCcHHHHHHHHHHHhccC
Q 018882 82 VQALLSDMSTQG--------------------------------IRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 82 a~~~~~~~~~~~--------------------------------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
|...+.+.++.. +.|+ ...|-.|...|...+.+++|...|.+.....
T Consensus 203 a~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 203 AKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred hHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 555544444331 1121 2344455555555555555555555554432
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 018882 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI 208 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (349)
+.....+..+...|...|.++.|+..|++.++.. +.=...|+.|..++-..|++.+|.+.+.+.....+. ...+.+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence 2234455555555667777777777777777653 223567888888888888888888888888776543 5677888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch-HHHHHHHHHHHHhcC
Q 018882 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD-TVFFNCLVDAYGRLK 287 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 287 (349)
|...+...|.++.|..+|....+.. +--....+.|...|-+.|++++|...+++..+.. |+ ...|+.+...|-..|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--PTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--chHHHHHHhcchHHHHhh
Confidence 8888888888888888888877642 2234567888888888888888888888887643 43 457888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 288 CFAEMKGVLEVMQQRGCKPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 288 ~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+.+.|...+.+.+.. .|. ...++.|...|..+|+..+|+..++...++++.
T Consensus 437 ~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred hHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 888888888888765 343 567888888899999999999888888777653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.5e-17 Score=145.64 Aligned_cols=327 Identities=10% Similarity=-0.012 Sum_probs=179.7
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
.+.|++++|.++|++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|
T Consensus 60 ~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~A 135 (765)
T PRK10049 60 RNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDE 135 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHH
Confidence 34566666666666666542 3345555566666666666666666666665542 33444 55566666666666666
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHH----------------------------------------
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV---------------------------------------- 122 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------------------- 122 (349)
...++++.+.. +-+...+..+..++...+..+.|++.++
T Consensus 136 l~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 136 LRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADR 214 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHH
Confidence 66666666653 2233333444444444444433333222
Q ss_pred ------HHhcc-CCCcchh-hHH----HHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 018882 123 ------KMLSE-DCEPDVW-TMN----CTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNILLDSYGKAGHFEKMSA 189 (349)
Q Consensus 123 ------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 189 (349)
.+.+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+. ....+...+...|++++|..
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 22211 0011110 000 0022334556667777777776665421 221 11224556666777777777
Q ss_pred HHHHHHhcCCCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCc---HHHHHHHHHHHHhcC
Q 018882 190 VMEYMQKYHYSW---TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-----------KPS---CVTLCSLVRAYGHAG 252 (349)
Q Consensus 190 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~ 252 (349)
.|+.+.+..... .......+..++...|++++|..+++.+..... .|+ ...+..+...+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 777665433211 123344555566677777777777776654321 112 123345556666777
Q ss_pred ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCchhhhHHHH
Q 018882 253 KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-KVTYRTMVRAYSTNGMKNHAKEFQ 331 (349)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 331 (349)
++++|+..++.+....+ .+...+..+...+...|++++|++.+++..... |+ ...+......+...|++++|...+
T Consensus 374 ~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 374 DLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77777777777665543 356666777777777777777777777776653 33 455555556667777777777777
Q ss_pred HHHHHHh
Q 018882 332 DLVEKMD 338 (349)
Q Consensus 332 ~~~~~~~ 338 (349)
+.+.+..
T Consensus 451 ~~ll~~~ 457 (765)
T PRK10049 451 DDVVARE 457 (765)
T ss_pred HHHHHhC
Confidence 7666544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-16 Score=143.33 Aligned_cols=330 Identities=9% Similarity=0.008 Sum_probs=246.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
...|+.++|++++....... +.+...+..+...+...|++++|.++|++..... +.+...+..+...+...|++++|
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45799999999999998742 4556679999999999999999999999988763 55677788888999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHH--------
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEK-------- 154 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-------- 154 (349)
...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|++
T Consensus 103 ~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~ 179 (765)
T PRK10049 103 LVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLT 179 (765)
T ss_pred HHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence 99999998873 44556 8888899999999999999999999874 3344444555556655555554443
Q ss_pred --------------------------------------HHHHHHhc-CCCCCHH-HHH----HHHHHHHhcCCHHHHHHH
Q 018882 155 --------------------------------------CYEKFQSA-GIQPSIN-TFN----ILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 155 --------------------------------------~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~ 190 (349)
.++.+.+. ...|+.. .+. ..+..+...|++++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33343322 1122211 111 113345677899999999
Q ss_pred HHHHHhcCCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 191 MEYMQKYHYS-WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP---SCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
|+.+.+.+.+ |+. ....+..++...|++++|...|+.+.+..... .......+..++...|++++|...++.+..
T Consensus 260 ~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 260 YQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred HHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 9999877532 322 22225678899999999999999987643111 134566677788999999999999998876
Q ss_pred CCC-----------Cch---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHH
Q 018882 267 SDI-----------MLD---TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 267 ~~~-----------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
..+ .|+ ...+..+...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.++
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 532 122 2355677888999999999999999998873 3367888899999999999999999999
Q ss_pred HHHHHhhh
Q 018882 333 LVEKMDET 340 (349)
Q Consensus 333 ~~~~~~~~ 340 (349)
...++.+.
T Consensus 418 ~al~l~Pd 425 (765)
T PRK10049 418 KAEVLEPR 425 (765)
T ss_pred HHHhhCCC
Confidence 98887654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-18 Score=140.46 Aligned_cols=310 Identities=14% Similarity=0.093 Sum_probs=257.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
..|++++|...+-+..+.. +--..+|..|...+-.+|++..|+..|++..+.. +.-...|-.|...|...+.+++|.
T Consensus 196 a~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred hhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHH
Confidence 4688888888888877753 2336789999999999999999999999998873 233578999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
..+.+..... +-....+..+...|...|..+-|+..|++.++.. +.-...|+.+..++-..|+..+|.+.|.+.....
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 9999988763 3356788888899999999999999999999764 3336789999999999999999999999998863
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHH
Q 018882 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-CVTLC 242 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 242 (349)
+.-....+.|...+...|.+++|..+|....+.... -....+.|...|-+.|++++|+..+++.... .|+ ...|+
T Consensus 351 -p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~ 426 (966)
T KOG4626|consen 351 -PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALS 426 (966)
T ss_pred -CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHH
Confidence 335677899999999999999999999998876533 4678899999999999999999999998764 555 57899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhc
Q 018882 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-KVTYRTMVRAYSTN 321 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~ 321 (349)
.+...|-..|+.+.|.+.+.+.+..++. =...++.|...|-..|+..+|+.-++...+. +|| +..|..++.+.---
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHH
Confidence 9999999999999999999999876532 3567888999999999999999999999876 566 45666666665333
Q ss_pred Cchh
Q 018882 322 GMKN 325 (349)
Q Consensus 322 g~~~ 325 (349)
.++.
T Consensus 504 cdw~ 507 (966)
T KOG4626|consen 504 CDWT 507 (966)
T ss_pred hccc
Confidence 3333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-15 Score=133.13 Aligned_cols=168 Identities=10% Similarity=0.029 Sum_probs=114.9
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANT--QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF 79 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 79 (349)
..+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++.... .+........+...+...|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCH
Confidence 357899999999999988763 443 233 7777888889999999999888721 133344444446678888999
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018882 80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
++|.++|+++.+.. +-++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999988874 335667777788888888888898888888765 455555544444444455665588888887
Q ss_pred HhcCCCCCHHHHHHHHHHH
Q 018882 160 QSAGIQPSINTFNILLDSY 178 (349)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~ 178 (349)
.+.. +-+...+..++.++
T Consensus 196 l~~~-P~n~e~~~~~~~~l 213 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEIL 213 (822)
T ss_pred HHhC-CCCHHHHHHHHHHH
Confidence 7653 22343433333333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-15 Score=134.48 Aligned_cols=267 Identities=9% Similarity=-0.048 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018882 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLR 141 (349)
Q Consensus 62 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (349)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 44555555555544 5555666655555544 244333333333444566666666666665433 233333444455
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH
Q 018882 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
.+.+.|+.++|...+++..+.. +.+...+..+.......|++++|...+++..+.. |+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 5566666666666666665543 2222222223333334466666666666665543 345556666666666666666
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
|...+++..+.. +.+...+..+..++...|++++|+..++...+..+ -+...+..+..++...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 666666665543 33445555555666666666666666666655443 2455566666666666666666666666665
Q ss_pred cCCCCCH-HHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 302 RGCKPDK-VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 302 ~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.. |+. .+.........+..+++.+.+.+++...+...
T Consensus 706 l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 706 DI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred cC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 42 322 33334444444555555555555555554443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.5e-15 Score=130.86 Aligned_cols=328 Identities=11% Similarity=0.035 Sum_probs=193.1
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
..|++++|+++|+++.+.. +.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHH
Confidence 4567777777777776653 334555666666666777777777777776655 344444433333333344554577
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHH-----------------------------------------
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV----------------------------------------- 122 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------------------- 122 (349)
+.++++.+.. +-+...+..+..++.+.|-...|.++..
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 7777776653 2244444555555544443333332222
Q ss_pred -------HHhcc-CCCcch-----hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018882 123 -------KMLSE-DCEPDV-----WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189 (349)
Q Consensus 123 -------~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 189 (349)
.+... +..|.. ....-.+.++...++..++++.|+.+...+.+....+-..+.++|...+++++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 11110 001211 11112344556667777777777777776655455566777777777777777777
Q ss_pred HHHHHHhcCC-----CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-------------CCcH-HHHHHHHHHHHh
Q 018882 190 VMEYMQKYHY-----SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-------------KPSC-VTLCSLVRAYGH 250 (349)
Q Consensus 190 ~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~ 250 (349)
+++.+..... .++......|..++...+++++|..+++.+.+... .||- ..+..++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 7777754321 22333345677777777777777777777765211 1111 123344566677
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHH
Q 018882 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
.|+..+|++.++.+....+ -|......+...+...|.+..|...++...... +-+..+......++...|++++|..+
T Consensus 429 ~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 7777777777777766543 477777777777777777777777776666552 12455566666677777777777777
Q ss_pred HHHHHHHh
Q 018882 331 QDLVEKMD 338 (349)
Q Consensus 331 ~~~~~~~~ 338 (349)
.+.+....
T Consensus 507 ~~~l~~~~ 514 (822)
T PRK14574 507 TDDVISRS 514 (822)
T ss_pred HHHHHhhC
Confidence 66654443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-15 Score=122.81 Aligned_cols=287 Identities=10% Similarity=0.027 Sum_probs=221.2
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHH--HHHHHHhccCcHH
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNT-YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN--TLIDAYGRAKMFA 115 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 115 (349)
..|+++.|.+.+....+.. ++... |.....+..+.|+++.+...+.++.+. .|+..... .....+...|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 3699999998888766542 22333 334455558899999999999999875 45554333 3367888999999
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 018882 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSI-------NTFNILLDSYGKAGHFEKMS 188 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~ 188 (349)
.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999998876 556778888999999999999999999999988654322 12333344444455566667
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018882 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
++++.+.+.- +.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++++++.+..+...+..
T Consensus 250 ~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 7777664432 347888889999999999999999999998873 4555332 2334445699999999999988765
Q ss_pred CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 269 IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+ -|+..+..+...+.+.+++++|.+.|+...+. .|+..++..+..++.+.|+.++|.++++.-..+..
T Consensus 325 P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 325 G-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4 47778889999999999999999999999986 68999999999999999999999999987765543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.4e-15 Score=116.19 Aligned_cols=309 Identities=13% Similarity=0.155 Sum_probs=190.9
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 018882 24 DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT 103 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 103 (349)
+.+..++..+|.++++--..++|.+++++.....+ +.+..+||.+|.+-.-..+ .+++.+|....+.||..|||+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~-kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG-KVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-eeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 44677888899998888888999999988877644 7788888888866543322 678888888888888888888
Q ss_pred HHHHHhccCcHHH----HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHH-HHHHHHHHHhc----CCC----CCHHH
Q 018882 104 LIDAYGRAKMFAE----MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDT-MEKCYEKFQSA----GIQ----PSINT 170 (349)
Q Consensus 104 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~----~~~~~ 170 (349)
++++..+.|+++. |.+++.+|.+.|+.|+..+|..+|..+++.++..+ +..++.++... .++ .|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 8888888887665 45667778888888888888888888888877644 44444443321 122 23444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYH----YSWT---IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (349)
|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|..|+-.-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 5556666666666666655544332210 1111 12233334444444444445555555544444444444444
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCC------------------------------------------------------C
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSD------------------------------------------------------I 269 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~------------------------------------------------------~ 269 (349)
++++....|.++-.-++|..++..| .
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 5554444444444444443333222 1
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC----KPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
.......+.+.-.+.+.|+.++|.++|..+.+.+- .|......-++..-.+......|..+++.+...
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 12344556666677788888888888887755432 233333445556667777777787777776443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-14 Score=129.50 Aligned_cols=325 Identities=14% Similarity=0.049 Sum_probs=244.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHhcCC---hh
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT-PDCQPDVNTYSILIKSCLKAFA---FD 80 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~---~~ 80 (349)
.+...++.+.+..|.+.. +-+......+.-...+.|+.++|..+|+..... +...++.....-++..+.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 456667777777777652 346677777777788999999999999988763 2223344445567777776655 22
Q ss_pred HHHHH----------------------HHHHHhc-CC-CC--chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchh
Q 018882 81 KVQAL----------------------LSDMSTQ-GI-RP--NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW 134 (349)
Q Consensus 81 ~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 134 (349)
++..+ ....... +. ++ +...|..+..++.. ++.++|...+.+.... .|+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence 33222 1121111 11 33 56778888888876 8888999988888765 45554
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (349)
....+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...++...+..+. +...+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHH
Confidence 4444455567899999999999998664 445555667788889999999999999999876522 3333444444455
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
..|++++|...+++..+. .|+...+..+..++.+.|++++|...++......+ .+...++.+..++...|++++|+.
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 669999999999999875 45688899999999999999999999999998764 367888899999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 295 VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 295 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.+++..+... -+...+..+..++...|++++|...++...+..+.
T Consensus 665 ~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 665 MLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999998743 36788999999999999999999999999887753
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-15 Score=122.87 Aligned_cols=283 Identities=10% Similarity=0.014 Sum_probs=221.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHH--HHHHHHHhcCChhH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTAL-LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS--ILIKSCLKAFAFDK 81 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~ 81 (349)
.|++++|.+.+....+.. +++..+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHH
Confidence 699999998888776642 233333333 44457999999999999999876 46654333 33678889999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcch-------hhHHHHHHHHHccCCHHHHHH
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV-------WTMNCTLRAFGNSGQIDTMEK 154 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 154 (349)
|...++++.+.. +-++.....+...|.+.|++++|.+++..+.+....++. ..|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999885 447788889999999999999999999999987644322 233344444445556677777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018882 155 CYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (349)
+++.+.+. .+.+......+...+...|+.++|..++++..+.. |+.... ++.+....++.+++.+..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence 77776544 35578888999999999999999999999988743 444322 3344446699999999999988664
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
+-|...+..+.+.|...+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|..++++-..
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556677889999999999999999999999885 47888888999999999999999999997754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-18 Score=135.72 Aligned_cols=263 Identities=15% Similarity=0.084 Sum_probs=111.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Q 018882 32 ALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA 111 (349)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (349)
.+...+.+.|++++|+++++........+.|...|..+...+...++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 5577888999999999999654433211345555666667777889999999999999887533 66677777777 788
Q ss_pred CcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018882 112 KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-IQPSINTFNILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 190 (349)
+++++|.+++....+. .++...+...+..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998887665 3566677788888999999999999999977543 345777888889999999999999999
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018882 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM 270 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (349)
+++..+..+. +....+.++..+...|+.+++..++....... +.++..+..+..++...|++++|...++...+...
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p- 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP- 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-
Confidence 9999887643 67888889999999999999888888876654 45667788899999999999999999999887653
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
.|+.....+..++...|+.++|.++.++...
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4888888999999999999999998876643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-14 Score=122.75 Aligned_cols=291 Identities=10% Similarity=-0.018 Sum_probs=212.2
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch--HHHHHHHHHHhccCc
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYNTLIDAYGRAKM 113 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~ 113 (349)
....|+++.|.+.+.+..+. .|+ ...+-....+..+.|+++.|.+.+.+..+.. |+. .........+...|+
T Consensus 94 a~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCC
Confidence 33679999999999888765 344 3444555677888899999999999987653 444 334445788889999
Q ss_pred HHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHH
Q 018882 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY---GKAGHFEKMSAV 190 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~ 190 (349)
++.|...++.+.+.. +-+......+...+...|++++|.+.+..+.+.+..++......-..++ ...+..+...+.
T Consensus 169 ~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 169 LHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999876 4466788899999999999999999999999987543332212111221 222333333345
Q ss_pred HHHHHhcCC---CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH---HHHHHHHHHhcCChhhHHHHHHHH
Q 018882 191 MEYMQKYHY---SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT---LCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 191 ~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
+..+.+..+ +.++..+..+...+...|+.++|.+++++..+.. |+... .....-.....++.+.+.+.++..
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 544444332 1378888899999999999999999999998764 33321 111112223457788888888887
Q ss_pred hhCCCCchH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 265 DNSDIMLDT--VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 265 ~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
.+..+ -|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 326 lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76543 245 677789999999999999999999644444578999899999999999999999999987533
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-18 Score=134.75 Aligned_cols=262 Identities=14% Similarity=0.106 Sum_probs=109.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC-CCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc
Q 018882 68 ILIKSCLKAFAFDKVQALLSDMSTQG-IRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS 146 (349)
Q Consensus 68 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (349)
.+...+.+.|++++|.++++...... .+.+...|..+...+...++++.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45777888999999999996655443 23355555566667777889999999999998765 3355566677766 688
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCChHHHHHH
Q 018882 147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYL 225 (349)
Q Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 225 (349)
+++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999888776654 3466667788888899999999999998876533 345778888888899999999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018882 226 FRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 305 (349)
+++..+.. +.|......++..+...|+.+++..+++...+.. +.|+..+..+..+|...|+.++|...|++..... +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 99988764 3457778888999999999999888888877654 3466778889999999999999999999988763 2
Q ss_pred CCHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 306 PDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 306 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
.|+.....+..++...|+.++|.++.+.+.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3788888899999999999999988876654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-14 Score=121.06 Aligned_cols=291 Identities=11% Similarity=-0.021 Sum_probs=212.0
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChh
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANT-QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV--NTYSILIKSCLKAFAFD 80 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~ 80 (349)
..|+++.|.+.+.+..+. .|+. ..+-....+..+.|+++.|.+.+.+..+. .|+. .........+...|+++
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHH
Confidence 579999999999988776 3543 33444566788899999999999998765 3443 33444578888999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHH---HccCCHHHHHHHHH
Q 018882 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF---GNSGQIDTMEKCYE 157 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~ 157 (349)
.|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+..++......-..++ ...+..+.+.+.+.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999985 3367788899999999999999999999999886443332211111111 22222233333444
Q ss_pred HHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhH-HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 158 KFQSAGI---QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY-NIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 158 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
.+.+... +.+...+..+...+...|+.++|.+++++..+..+......+ ..........++.+.+.+.++...+..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4444321 237888999999999999999999999999887543221111 222222344578888888888877653
Q ss_pred CCCcH--HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 234 IKPSC--VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 234 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344 567789999999999999999999654444567888888999999999999999999997643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-14 Score=114.83 Aligned_cols=315 Identities=13% Similarity=0.161 Sum_probs=225.2
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--cCCChh-HHHHHHHHhhcCC------------------CCCCC
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYG--RSGLFD-KAFSLLEHMKNTP------------------DCQPD 62 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~-~a~~~~~~~~~~~------------------~~~~~ 62 (349)
.+|.+..+.-+++.|.+.|++.+...-..|+..-+ .+.++- .-++.|-.|.+.+ ..+.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 46778888889999999988878777666665422 222221 2233333343321 12456
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018882 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
..+|.++|.++++--..+.|.+++++-.....+.+..+||.+|.+-.-... .+++.+|.+....||..|+|+++++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHH
Confidence 678899999999998899999999988887778889999998876543322 6788888888889999999999999
Q ss_pred HHccCCHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----cCCCC----chhhHHHH
Q 018882 143 FGNSGQIDT----MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK-MSAVMEYMQK----YHYSW----TIVTYNIV 209 (349)
Q Consensus 143 ~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l 209 (349)
..+.|+++. |.+++.+|++.|+.|+..+|..+|..+++.++..+ +..++.++.. ..++| |...|...
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 999997765 56778888899999999999999998888887644 3444444432 22222 34556667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC----CCCCcH---HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRSE----RIKPSC---VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
+..|.+..+.+-|..+..-+... -+.|+. .-|..+....+.....+.....++.+.-.-.-|+..+...++++
T Consensus 363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 77777888888888877665432 123332 33556667777778888888888888877667888888888898
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018882 283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
..-.|.++-..++|.+++..|..-+...-..++..+++..
T Consensus 443 ~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 8889999999999998888875555555555555555544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-14 Score=107.73 Aligned_cols=294 Identities=14% Similarity=0.081 Sum_probs=223.3
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCc--hHHHHHHHHHHhccCcHH
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG-IRPN--TVTYNTLIDAYGRAKMFA 115 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~ 115 (349)
-+++.++|.++|-+|.+.+ +.+..+--+|.+.+-+.|..+.|+.+.+.+.++. .+-+ ....-.|..-|...|-++
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 3567899999999998863 4556667788899999999999999999988762 1111 123344667788899999
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS----INTFNILLDSYGKAGHFEKMSAVM 191 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 191 (349)
.|+++|..+.+.+ ..-......++..|-...+|++|+++-.++.+.+..+. ...|.-+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999998865 44455678899999999999999999999988765543 345667777777788999999999
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 018882 192 EYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML 271 (349)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 271 (349)
.+..+.+.+ .+..--.+.+.....|+++.|.+.++...+.+..--..+...|..+|...|++++...++..+.+....
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g- 281 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG- 281 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-
Confidence 999887644 566666777888999999999999999998876666778889999999999999999999988876433
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
...-..+...-....-.+.|..++.+-... +|+...+..++..-...+....+.+-+..+++|-..
T Consensus 282 -~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 -ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred -ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 333334444444444556666666555554 689999999999877665554566666666666543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-13 Score=117.59 Aligned_cols=324 Identities=15% Similarity=0.133 Sum_probs=251.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 84 (349)
.|++++|..++.++.+.. +.+...|..|...|-+.|+.+++...+-...... +.|...|..+.....+.|++++|.-
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHH
Confidence 499999999999999874 6678899999999999999999999987776653 6778899999999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhh----HHHHHHHHHccCCHHHHHHHHHHHH
Q 018882 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWT----MNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
+|.+.++.. +++...+-.-...|-+.|+...|...|.++.+...+.|..- ....++.+...++.+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999884 45666666677889999999999999999998753333322 2334566777788888998888876
Q ss_pred hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------------CCchhhHHHHHHH
Q 018882 161 SA-GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY---------------------------SWTIVTYNIVIDA 212 (349)
Q Consensus 161 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~ 212 (349)
.. +-..+...++.++..+.+...++.+......+..... .++.... -++-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 63 2244666788899999999999999888877765211 1222221 22233
Q ss_pred HHhcCChHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSER--IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
+......+....+........ +.-+...|..+..++...|++.+|..++..+......-+...|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 344444455555555555555 344567889999999999999999999999988766667889999999999999999
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 291 EMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 291 ~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
+|.+.|+..... .| +...-..|...+.+.|+.++|.+.++.+.
T Consensus 467 ~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 467 EAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999876 33 34455667777899999999999887654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-13 Score=106.29 Aligned_cols=293 Identities=14% Similarity=0.115 Sum_probs=197.4
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHH
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 119 (349)
.|++.+|.++..+-.+.+ ......|..-..+.-+.|+.+.+-.++.+..+..-.++....-.........|+...|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 577777777777766553 233445556666667777777777777777765334555566666667777777777777
Q ss_pred HHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSI-------NTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
-++++...+ +...........+|.+.|++.....++..+.+.|.--+. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 777777665 445566677777777777777777777777777654432 356666666665555555555555
Q ss_pred HHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch
Q 018882 193 YMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD 272 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (349)
..... .+-++..-..++.-+.+.|+.++|.++..+..+.+..|+ ... .-.+.+.++++.-.+..+.-.+... -+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h~-~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQHP-ED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhCC-CC
Confidence 55433 233566666777777888888888888887777665554 222 2235566777766666666544322 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhhhc
Q 018882 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLA 343 (349)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (349)
+..+.+|...|.+.+.|.+|...|+...+. .|+..+|..+..++.+.|+..+|.+..+....+-.++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 577778888888888888888888866654 678888888888888888888888887777655544443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-13 Score=103.89 Aligned_cols=291 Identities=13% Similarity=0.105 Sum_probs=223.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChhHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV--NTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a 82 (349)
..+.++|+++|-+|.+.. +.+..+.-+|...|.+.|..++|+.+.+.+.++++..-+. .+...|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 568899999999999853 4556777889999999999999999999998875432222 2344567778889999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcc----hhhHHHHHHHHHccCCHHHHHHHHHH
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD----VWTMNCTLRAFGNSGQIDTMEKCYEK 158 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 158 (349)
+++|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+. ...|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999998652 3556778899999999999999999998887654433 23456666777778899999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 018882 159 FQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (349)
..+.+. .....--.+.+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+..+.+....+
T Consensus 206 Alqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-- 282 (389)
T COG2956 206 ALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-- 282 (389)
T ss_pred HHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--
Confidence 888752 24445556778889999999999999999998866667889999999999999999999999988764333
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc
Q 018882 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR---LKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~ 302 (349)
..-..+.+......-.+.|...+.+-... +|+...+..+|..... .|...+.+.+++.|...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33444444444445566666666554443 4899999999988755 34566777778887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-14 Score=120.47 Aligned_cols=289 Identities=12% Similarity=0.103 Sum_probs=190.7
Q ss_pred ChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCchHHHHHHHHHHhccCcHHHHH
Q 018882 42 LFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQG--IRPNTVTYNTLIDAYGRAKMFAEME 118 (349)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 118 (349)
+.++|+..|+++... .+| ......+..+|...+++++|+++|+.+.+.. ..-+..+|.+.+--+-+.- +--
T Consensus 334 ~~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v---~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH---HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV---ALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH---HHH
Confidence 356777777775554 233 3445566777888888888888888777652 1124556666554332211 111
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
-+-+.+.+.. +-.+.+|..+..+|.-.++.+.|++.|++..+.. +-...+|+.+..-+.....+|.|...|+......
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 1222333222 4456778888888888888888888888877653 2256677777777777778888888887776543
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018882 199 YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC 278 (349)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (349)
.. +...|--+...|.+.++++.|+-.|+.+.+.+ +-+......+...+-+.|+.++|+++++++.....+ |+..--.
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 32 44555556677778888888888888777655 445566667777777788888888888887766543 5555455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhhhc
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLA 343 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (349)
.+..+...+++++|+..++++++. .| +...+..+...|.+.|+.+.|..-+..+.++++.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 666677778888888888888775 34 4556677777788888888888877777777765543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.9e-13 Score=104.27 Aligned_cols=293 Identities=12% Similarity=0.042 Sum_probs=235.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
-.|+|.+|+++..+-.+.+-. ....|..-..+.-+.|+.+.+-.++.+..+..+ .++...+-+........|+.+.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhHH
Confidence 369999999999998888633 344566666777889999999999999988744 567777888888999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcch-------hhHHHHHHHHHccCCHHHHHHHH
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV-------WTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
.-++++.+.+ +-++........+|.+.|++.+...++.++.+.+.-.+. .+|..++.-....+..+.-...|
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 9999999886 347788899999999999999999999999999865543 46777777777777777767777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 018882 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (349)
+..... ...++..-..++.-+.++|+.++|.++..+..+.+..|. ... .-.+.+-++...-.+..+.-.+.. +-
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 776554 355677788889999999999999999999998887665 222 223456777777777776654432 44
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018882 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 307 (349)
++..+..+...|.+.+.+.+|...|+...+. .|+...|+.+..+|.+.|+..+|.++.++....-..|+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 5588899999999999999999999987765 57999999999999999999999999988775433443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-14 Score=120.73 Aligned_cols=291 Identities=12% Similarity=0.015 Sum_probs=228.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCChhHHHHH
Q 018882 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-QPDVNTYSILIKSCLKAFAFDKVQAL 85 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~ 85 (349)
+..+|...|..+.++ +..+..+...+..+|...+++++|.++|+.+++.... ..+...|.+.+.-+-+.-.. -.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~L---s~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVAL---SYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHH---HHH
Confidence 457889999996665 3344567778899999999999999999999886432 23677888887654432211 122
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018882 86 LSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
-+.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+....+++.|...|...+... +
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 33344432 4478899999999999999999999999999774 3478889999888999999999999999887542 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
-+-..|.-+.-.|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.++|+++++++.... +.|+..--.-+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 23444555677899999999999999999988755 77778888889999999999999999998765 34444444556
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 307 (349)
..+...+++++|...++++++.-+ -+...+..+...|.+.|+.+.|+.-|--+.+...++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 677889999999999999998643 3667788899999999999999999988887754443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-13 Score=105.38 Aligned_cols=256 Identities=8% Similarity=0.033 Sum_probs=127.3
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCchHHHHHHHHHHhccCcH
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 114 (349)
+-...+.+++..-.+..... |.+-+...-+....+.....++++|+.+|+++.+... --|..+|..++-. +...-
T Consensus 237 ~~el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s 313 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence 33344555555555555444 2222222223333334445566666666666655411 0134444444422 22111
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
.-+ -+-......+ +-.+.|+..+.+-|.-.++.++|...|++..+.+ +.....|+.+..-|....+...|..-++..
T Consensus 314 kLs-~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLS-YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHH-HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 100 0111111111 2223445555555555566666666666655553 224445555555566666666666666666
Q ss_pred HhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH
Q 018882 195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV 274 (349)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 274 (349)
.+.++. |...|-.+.++|.-.+.+.-|+-.|++..+.. +-|...|..|.++|.+.++.++|++.|......+- .+..
T Consensus 391 vdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~ 467 (559)
T KOG1155|consen 391 VDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGS 467 (559)
T ss_pred HhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchH
Confidence 555433 55666666666666666666666666555443 34555566666666666666666666665555442 2445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
.+..|.+.|-+.++..+|...|+...+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 555566666666666666555554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-12 Score=105.19 Aligned_cols=259 Identities=11% Similarity=0.049 Sum_probs=205.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCC--CcchhhHHHHHHHHHccCC
Q 018882 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC--EPDVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 148 (349)
.++-.....+++.+-...+...|++-+...-+....+.....++++|+.+|+++.+... --|..+|..++-+-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444456666777777777778776666666666677778899999999999988742 1256677766544332222
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 018882 149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
. ..+.+-...--+--+.|+..+.+-|+-.++.++|...|+...+.+.. ....|+.+..-|....+...|.+.++.
T Consensus 315 L----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 315 L----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred H----HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2 22222221111334567888999999999999999999999998755 678899999999999999999999999
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 018882 229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 308 (349)
+++.. +.|...|-.|.++|.-.+.+.-|+-.|++.....+ -|+..|.+|..+|.+.++.++|++.|.+....|-. +.
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 99876 67889999999999999999999999999998764 58999999999999999999999999999987633 67
Q ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
..+..+...|.+.++.++|..++++..+.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88999999999999999999999887663
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-12 Score=109.98 Aligned_cols=303 Identities=12% Similarity=0.107 Sum_probs=234.4
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
..+...|++++|.+++.++.+.. +.+...|.+|...|-..|+.+++...+-...... +-|...|..+.......|++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 33445599999999999999875 6788999999999999999999998876665553 44778899999999999999
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH----HHHHHHHHhcCCHHHHHHH
Q 018882 115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF----NILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~ 190 (349)
++|.-.|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|..-+ ..++..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999876 556666666778899999999999999999987543333333 3345666777778999998
Q ss_pred HHHHHhc-CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC---------------------------CCCcHHHHH
Q 018882 191 MEYMQKY-HYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER---------------------------IKPSCVTLC 242 (349)
Q Consensus 191 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~ 242 (349)
++..... +-..+...++.++..+.+...++.+......+.... ..++..+ .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 8877652 233467788899999999999999998887776511 1222222 1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCC--CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 243 SLVRAYGHAGKPEKLGSVLRFIDNSD--IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 320 (349)
.+.-++.+....+....+........ +.-+...|.-+..+|...|++.+|+.+|..+......-+...|..+.++|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 23334555555565666666665555 3345678999999999999999999999999987555567799999999999
Q ss_pred cCchhhhHHHHHHHHHHhhhhh
Q 018882 321 NGMKNHAKEFQDLVEKMDETCL 342 (349)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~ 342 (349)
.|.+++|.++++++....+...
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCch
Confidence 9999999999999988776543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-12 Score=101.68 Aligned_cols=312 Identities=14% Similarity=0.093 Sum_probs=160.9
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-----------CCCHHHHHHHH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-----------QPDVNTYSILI 70 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~ll 70 (349)
|.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|...++. .|+....+-.+
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 45778888888888888775 477655545555566678888888888888765431 22222222211
Q ss_pred -----HHHHhcCChhHHHHHH---HHHHhcCCCCchH-------------HHH--------HHHHHHhccCcHHHHHHHH
Q 018882 71 -----KSCLKAFAFDKVQALL---SDMSTQGIRPNTV-------------TYN--------TLIDAYGRAKMFAEMELTL 121 (349)
Q Consensus 71 -----~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~-------------~~~--------~l~~~~~~~~~~~~a~~~~ 121 (349)
+-.-+.+. ..|++.. -+++.--+.|+-. .+. .-..-+.+.|+++.|++++
T Consensus 364 ~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 364 KNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred hhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 11111111 1111111 1111111112110 000 0112356778888888777
Q ss_pred HHHhccCCCc---------------------chh----------hHHHHH-----HHHHccCCHHHHHHHHHHHHhcCCC
Q 018882 122 VKMLSEDCEP---------------------DVW----------TMNCTL-----RAFGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 122 ~~~~~~~~~~---------------------~~~----------~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
+-..+..-+. +.. -||.-. ......|++++|.+.|.+...+...
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 6654432111 011 111100 1122456778888888877765433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
-....|++- -.+-..|++++|++.|-++...- ..+....-.+...|....+...|++++.+.... ++.|+.+++.|.
T Consensus 523 c~ealfnig-lt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALFNIG-LTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 233333332 23556777788777776654321 124555566666666666666676666555332 344556666666
Q ss_pred HHHHhcCChhhHHHHH----------------------------------HHHhhCCCCchHHHHHHHHHHH-HhcCCHH
Q 018882 246 RAYGHAGKPEKLGSVL----------------------------------RFIDNSDIMLDTVFFNCLVDAY-GRLKCFA 290 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~----------------------------------~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 290 (349)
..|-+.|+-..|.+.+ +... -+.|+..-|..++..| .+.|++.
T Consensus 600 dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHH
Confidence 6666666655554433 3222 1345555565554443 3356666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018882 291 EMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 291 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
.|.+++++..+. ++.|.....-|++.+...|
T Consensus 678 ka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 678 KAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 666666665543 3335555555555555544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-12 Score=111.05 Aligned_cols=330 Identities=13% Similarity=0.058 Sum_probs=179.4
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC----
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF---- 77 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---- 77 (349)
|...|++++|...|....+..-...+..+..|.+.+.+.|+++.+...|+.+.+.. +.+..+...+...|...+
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhH
Confidence 34567777777776666554311113344556666777777777777777666552 334445555555555443
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHh----ccCCCcchhhHHHHHHHHHccCCHHHHH
Q 018882 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML----SEDCEPDVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
..+.|..++.+..+.- +.|...|-.+...+-...-+.. +.+|.... ..+..+.+...|.+...+...|++..|.
T Consensus 395 ~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 3344555554444432 3355555555555544433322 44444332 2333455667777777777778888887
Q ss_pred HHHHHHHhc---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------------------
Q 018882 154 KCYEKFQSA---GIQPSI------NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS------------------------ 200 (349)
Q Consensus 154 ~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------------ 200 (349)
..|...... ...++. .+-..+...+-..++.+.|.+.|..+.+..+.
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHH
Confidence 777776544 111222 12223444444555666666666655543311
Q ss_pred ---------CchhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHh------------cCChhhHH
Q 018882 201 ---------WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-RIKPSCVTLCSLVRAYGH------------AGKPEKLG 258 (349)
Q Consensus 201 ---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~ 258 (349)
.++..++.+...+.....+..|.+-|...... ...+|..+...|...|.. .+..++|+
T Consensus 553 lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAl 632 (1018)
T KOG2002|consen 553 LKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKAL 632 (1018)
T ss_pred HHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHH
Confidence 12333333333444333333333322222211 112344444444443331 23356677
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
++|..+.+..+ .|...-|-+.-+++..|++.+|..+|.+..+... -...+|..+..+|..+|++..|++.|+...+.
T Consensus 633 q~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 633 QLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776654 3666667777777777888888888877777643 24556777777777777777777777766554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-12 Score=112.07 Aligned_cols=249 Identities=10% Similarity=-0.022 Sum_probs=143.9
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH
Q 018882 44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCL---------KAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
++|...|++..+.. +.+...|..+..++. ..+++++|...+++..+.. +-+...+..+...+...|++
T Consensus 278 ~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 278 QQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 56777777776653 233445554444333 1234677777777777663 23556666666677777777
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...++++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 77777777777664 334556666777777777777777777777765422 2223333344455667777777777776
Q ss_pred HhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCchH
Q 018882 195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-IMLDT 273 (349)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 273 (349)
.....+-++..+..+..++...|+.++|...+.++.... +.+....+.+...+...| +.|...++.+.+.. ..+..
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 654322244456666667777777777777777764432 222333444445555555 35666555544321 11111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 303 (349)
..+ +-..|.-.|+.+.+..+ +++.+.|
T Consensus 510 ~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 510 PGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 111 33344555665555554 6666553
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-11 Score=100.19 Aligned_cols=326 Identities=10% Similarity=0.024 Sum_probs=184.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
+.+.++-|..+|....+- ++-+...|......--..|..++...+|++.... ++.....|....+..-..|++..|.
T Consensus 528 k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred hcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 445555666666665554 2334455555555555556666666666665553 1333344444445555556666666
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
.++....+.. +-+...|-.-+..-..+..++.|..+|.+.... .|+...|..-+..---.++.++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 6666655543 224455555555555666666666666655543 344445544444444555556666655555543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018882 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++.-...|-.+...+-+.++.+.|...|..-.+.- +-.+..|-.+...--+.|.+-.|..+++...-.+ +.+...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 12223334444445555555555555554433332 2234444444444444455555555555544333 334445555
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhC-----------------------------CCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNS-----------------------------DIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~-----------------------------~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
.|+.-.+.|+.+.|..+....... .+.-|+++.-.+...|....+++.|.+
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~ 838 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKARE 838 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444332211 123467777788888999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 295 VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 295 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.|.+....+.. +..+|..+..-+.++|.-++-.+++.++..-++
T Consensus 839 Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 839 WFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 99999987533 568899999999999998888888888766544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-11 Score=102.74 Aligned_cols=289 Identities=15% Similarity=0.137 Sum_probs=204.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHH-HHHHHHHHhc----
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY-SILIKSCLKA---- 76 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~---- 76 (349)
+...|++++|++.++.-... +.............+.+.|+.++|..+|..+... .|+...| ..+..+..-.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhcccc
Confidence 45689999999999886654 3444566777888899999999999999999987 3555554 4555544222
Q ss_pred -CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHH-HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHH
Q 018882 77 -FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA-EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEK 154 (349)
Q Consensus 77 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 154 (349)
.+.+....+++++... -|.......+.-.+.....|. .+...+..+...|+++ +|+.+-..|.......-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 3567778888888766 244444444433333333443 3455666777777544 56666666666655555566
Q ss_pred HHHHHHhc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC
Q 018882 155 CYEKFQSA----G----------IQPSI--NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 155 ~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
++...... + -+|+. .++..+...|...|++++|...++...++.+. .+..|..-...+-..|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 66555432 1 13344 34466678888999999999999999887643 47888888999999999
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH------HH--HHHHHHHHhcCCHH
Q 018882 219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV------FF--NCLVDAYGRLKCFA 290 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~g~~~ 290 (349)
+.+|.+.++..+... .-|...-+..+..+.+.|+.++|.+++....+.+..|... +| .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999998776 4567777788888999999999999999887765433221 22 44578899999999
Q ss_pred HHHHHHHHHHh
Q 018882 291 EMKGVLEVMQQ 301 (349)
Q Consensus 291 ~a~~~~~~m~~ 301 (349)
.|++-|....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88877766543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-10 Score=94.22 Aligned_cols=324 Identities=10% Similarity=0.060 Sum_probs=234.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 84 (349)
.|++..|.++|++..+- .|+..+|++.+..=.+.+.++.|..+++...-. .|++.+|--....-.+.|+...+..
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 58889999999998875 799999999999999999999999999998865 7899998888888888888888888
Q ss_pred HHHHHHhc-CC-CCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc-----------------------------------
Q 018882 85 LLSDMSTQ-GI-RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----------------------------------- 127 (349)
Q Consensus 85 ~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------------- 127 (349)
+|+...+. |- ..+...|.+....=.++..++.|.-+|+-.++.
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 88887664 21 011222222222222333344443333222111
Q ss_pred --------CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHH--HHHHHH--------HHHHhcCCHHHHHH
Q 018882 128 --------DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSIN--TFNILL--------DSYGKAGHFEKMSA 189 (349)
Q Consensus 128 --------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~--------~~~~~~~~~~~a~~ 189 (349)
.-+-|-.+|-..++.-...|+.+...++|++.+.+ ++|-.. .|.-.| -.-....+.+.+.+
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 01345567777777778889999999999998876 344211 121111 11135678888899
Q ss_pred HHHHHHhcCCCCchhhHHH----HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 190 VMEYMQKYHYSWTIVTYNI----VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
+++...+. ++....|+.- ......++.++..|..++.... |..|...+|...|..=.+.++++.+..+++...
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99888773 3334444443 3444457788999999998765 567888999999999999999999999999999
Q ss_pred hCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHh
Q 018882 266 NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC-KPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 266 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
+.++ .+..+|......-...|+.+.|..+|+-..+... ......|.+.|.--...|.++.|..+++.+.+..
T Consensus 465 e~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 465 EFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9875 4888999888888899999999999999988732 2234567777777788999999999998876654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.57 E-value=8e-12 Score=97.76 Aligned_cols=201 Identities=13% Similarity=0.055 Sum_probs=124.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 018882 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555566666666666666666665542 234555566666666666666666666666655422 44555666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERI-KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 291 (349)
+...|++++|...++....... +.....+..+...+...|++++|...+........ .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 6666777777777766654321 12234555566667777777777777777665432 245566667777777777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 292 MKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 292 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
|...+++.... .+.+...+..+...+...|+.+.|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 77777777665 2334555666666777777777777766665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-11 Score=96.20 Aligned_cols=328 Identities=10% Similarity=0.042 Sum_probs=193.9
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCh
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDAN-TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAF 79 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~ 79 (349)
|-++|++++|++.+.+..+. .|+ +..|.....+|...|+++++.+.-.+..+. .|+ +..+..-.+++-..|++
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl---~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL---NPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---CcHHHHHHHHHHHHHHhhccH
Confidence 45789999999999999987 477 888999999999999999999888877765 344 34455555666666666
Q ss_pred hHHHH----------------------HHHH---------HHhcC--CCCchHHHHHHHHHHhc----------------
Q 018882 80 DKVQA----------------------LLSD---------MSTQG--IRPNTVTYNTLIDAYGR---------------- 110 (349)
Q Consensus 80 ~~a~~----------------------~~~~---------~~~~~--~~~~~~~~~~l~~~~~~---------------- 110 (349)
++|+. ++.. +.+.+ +-|+.....+....+..
T Consensus 200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~ 279 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA 279 (606)
T ss_pred HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence 55431 1111 11011 22333322222222210
Q ss_pred -----------------------------------------------------------cCcHHHHHHHHHHHhccCCCc
Q 018882 111 -----------------------------------------------------------AKMFAEMELTLVKMLSEDCEP 131 (349)
Q Consensus 111 -----------------------------------------------------------~~~~~~a~~~~~~~~~~~~~~ 131 (349)
.|+.-.|..-|+..+.....
T Consensus 280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~- 358 (606)
T KOG0547|consen 280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA- 358 (606)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-
Confidence 12222222222222222111
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 018882 132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVID 211 (349)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 211 (349)
+...|-.+..+|....+.++..+.|+...+.+ +-++.+|..-.....-.+++++|..-|++.....+. +...|-.+..
T Consensus 359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~ 436 (606)
T KOG0547|consen 359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCC 436 (606)
T ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHH
Confidence 11124445555666666666666666666554 224555555555555566667777666666665433 4555555666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-------chHHHHHHHHHHHH
Q 018882 212 AFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM-------LDTVFFNCLVDAYG 284 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~li~~~~ 284 (349)
+..+.+.++++...|++.... .+-.+..|+...+.+...++++.|.+.|+..++.... +.+.+--.++..-.
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence 666777777777777777654 3445567777777777777888888777777654322 11111222222222
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 285 RLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.+++..|..++....+.+.+ ....|..|...-.+.|+.++|+++|++-..+-++
T Consensus 516 -k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 516 -KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred -hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 26777777777777766432 3456777777788888888888888776555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-11 Score=107.69 Aligned_cols=267 Identities=10% Similarity=0.041 Sum_probs=188.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh---------ccCcHHHHHHHHHHHh
Q 018882 60 QPDVNTYSILIKSCLK-----AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG---------RAKMFAEMELTLVKML 125 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 125 (349)
+.+...|...+.+... .+++++|...|++..+.. +-+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3555656665555322 234678999999998873 224556666655543 2345899999999999
Q ss_pred ccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhh
Q 018882 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVT 205 (349)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 205 (349)
+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.++. +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 875 4567778888888999999999999999999875 446778888999999999999999999999887644 3333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
+..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+..+..... .+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhc
Confidence 3444555667899999999999987654223455577788888999999999999998765432 245556667777788
Q ss_pred cCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 286 LKCFAEMKGVLEVMQQR-GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 286 ~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
.| +.|...++.+.+. ...|....+ +-..+.-.|+.+.+... +.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 88 4777777776654 122322333 33344555666666655 55544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.6e-13 Score=113.81 Aligned_cols=252 Identities=14% Similarity=0.078 Sum_probs=143.8
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
.++-.+...|+.|+..+|.+++.-|+..|+++.|- +|.-|+-. ..+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC---------
Confidence 45677888899999999999999999999999998 88888766 33677888999999988888887776
Q ss_pred CCCCchHHHHHHHHHHhccCcHHH---HHHHHHHHhc----cCCCcchhhHHHH--------------HHHHHccCCHHH
Q 018882 93 GIRPNTVTYNTLIDAYGRAKMFAE---MELTLVKMLS----EDCEPDVWTMNCT--------------LRAFGNSGQIDT 151 (349)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~~~~~~~~l--------------~~~~~~~~~~~~ 151 (349)
.|.+.+|..|..+|...|+... +.+.+..... .|+......+-.. +......|-++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6788999999999999998654 3332222211 1111111111000 111111122222
Q ss_pred HHHHHHHHHhcCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 018882 152 MEKCYEKFQSAGIQPSINTFNI---LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
+.+++..+ |...-++. +++-+... ..-..++........-.|++.+|..++..-...|+.+.|..++.+
T Consensus 158 llkll~~~------Pvsa~~~p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 158 LLKLLAKV------PVSAWNAPFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHhhC------CcccccchHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 22222111 11111110 12221111 122222222222221135666666666666666666666666666
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC
Q 018882 229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
|.+.|.+.+..-|..++-+ .++..-+..+++-|.+.|+.|+..|+...+..+..+|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 6666666655555555433 55555556666666666666666666665555555443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-11 Score=96.76 Aligned_cols=200 Identities=11% Similarity=0.049 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018882 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555555556666666666666555442 2234455555555566666666666666555443 2233445555555
Q ss_pred HHccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGI-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
+...|++++|.+.+.+..+... +.....+..+...+...|++++|...+++....... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 5666666666666666554321 112334455555666666666666666666554322 34555566666666666666
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
|...+++.... .+.+...+..+...+...|+.+.|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666666554 233445555555666666666666666555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.6e-13 Score=101.79 Aligned_cols=237 Identities=14% Similarity=-0.003 Sum_probs=195.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHH
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT 139 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (349)
..|-.--+.+.++|.+.|.+.+|.+.++...+. .|-+.||-.|-+.|.+..+...|+.++.+-.+.- +-++....-+
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ 296 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQ 296 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cchhhhhhhh
Confidence 344444567889999999999999999888776 5677889889999999999999999999887652 4455555667
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 018882 140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL 219 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (349)
.+.+...++.++|.++|+...+.. +.+......+...|.-.++++.|...++++.+.|.. ++..|+.+.-+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 788888999999999999988764 446777777778888899999999999999999977 888999998888899999
Q ss_pred HHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 220 KQMEYLFRLMRSERIKPS--CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
+-++..|.+....-..|+ ..+|-.+....+..|++..|.+.|+....++. -+...+|.|...-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 999999988875433333 45788888888899999999999999887764 377889999988999999999999998
Q ss_pred HHHhc
Q 018882 298 VMQQR 302 (349)
Q Consensus 298 ~m~~~ 302 (349)
.....
T Consensus 454 ~A~s~ 458 (478)
T KOG1129|consen 454 AAKSV 458 (478)
T ss_pred Hhhhh
Confidence 88765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-12 Score=100.45 Aligned_cols=240 Identities=9% Similarity=-0.037 Sum_probs=201.2
Q ss_pred CCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018882 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL 174 (349)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 174 (349)
..|-.--+.+.++|.+.|.+.+|.+.++..... .|-+.||..+-++|.+..++..|+.++.+-.+. .+-+.....-.
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ 296 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQ 296 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhh
Confidence 334444467889999999999999999998877 567778999999999999999999999998876 34455555667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
.+.+...++.++|.++++...+.... ++.....+...|.-.++++.|..+++++.+.|+ .++..|+.+.-+|...+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 78888999999999999999887643 778888888889999999999999999999995 5778999999999999999
Q ss_pred hhHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHH
Q 018882 255 EKLGSVLRFIDNSDIML--DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
+-++.-|.+....--.| -..+|-.+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|+.++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 99999998876543323 3457878888889999999999999988877533 57889999888899999999999998
Q ss_pred HHHHHhhh
Q 018882 333 LVEKMDET 340 (349)
Q Consensus 333 ~~~~~~~~ 340 (349)
......+.
T Consensus 454 ~A~s~~P~ 461 (478)
T KOG1129|consen 454 AAKSVMPD 461 (478)
T ss_pred HhhhhCcc
Confidence 87766543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-10 Score=98.76 Aligned_cols=296 Identities=13% Similarity=0.079 Sum_probs=209.6
Q ss_pred HHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc-
Q 018882 33 LLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA- 111 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 111 (349)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ +.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 345677899999999999886654 23445556788899999999999999999999985 22444455555555222
Q ss_pred ----CcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018882 112 ----KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID-TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 112 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
...+....+|+++...- |.......+.-.+.....+. .+..++..+...|++ .+|+.+-..|.......-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 35677788888887653 44333333332233222332 355666777788865 356666666665555555
Q ss_pred HHHHHHHHHhc----C----------CCCch--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 187 MSAVMEYMQKY----H----------YSWTI--VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 187 a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
...++...... + -+|+. .++..+.+.|-..|++++|+++++..++.. +-.+..|..-.+.+-+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 55565554322 1 12333 344666788889999999999999998864 3336788888899999
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------HH--HHHHHHHHhcC
Q 018882 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV------TY--RTMVRAYSTNG 322 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~--~~l~~~~~~~g 322 (349)
.|++.+|...++........ |...-+..+..+.++|++++|.+++....+.+..|-.. .| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988763 77777888999999999999999999888776543322 22 34456899999
Q ss_pred chhhhHHHHHHHHHHh
Q 018882 323 MKNHAKEFQDLVEKMD 338 (349)
Q Consensus 323 ~~~~a~~~~~~~~~~~ 338 (349)
++..|.+.+..+.+.-
T Consensus 320 ~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 320 DYGLALKRFHAVLKHF 335 (517)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999887776653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.5e-12 Score=104.83 Aligned_cols=252 Identities=18% Similarity=0.163 Sum_probs=187.2
Q ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHhcc-----C-CCcchhh-HHHHHHHHHccCCHHHHHHHHHHHHhc-----CC
Q 018882 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSE-----D-CEPDVWT-MNCTLRAFGNSGQIDTMEKCYEKFQSA-----GI 164 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 164 (349)
-..+...|...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677889999999999999999888765 2 1333333 344777899999999999999998753 21
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhC---
Q 018882 165 --QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY-----H-YSWT-IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--- 232 (349)
Q Consensus 165 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 232 (349)
+.-..+++.|..+|.+.|++++|...++...+. + ..|. ...++.+...+...++++.|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 122456777888899999999998888766431 1 1122 234666777888999999999998876432
Q ss_pred CCC----CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----C---CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 233 RIK----PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----D---IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 233 ~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
-+. --..+++.+...|...|++++|..+++.+... + ..-....++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 111 22467899999999999999999999887542 1 112345678899999999999999999887654
Q ss_pred c----CC-CCC-HHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhhhccCCCC
Q 018882 302 R----GC-KPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD 348 (349)
Q Consensus 302 ~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~p~ 348 (349)
. |. .|+ ..+|..|...|...|+++.|.++.+.+....+...+...|+
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 3 22 233 46799999999999999999999999998877666665554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-10 Score=98.07 Aligned_cols=242 Identities=12% Similarity=0.028 Sum_probs=126.4
Q ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCC--cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018882 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE--PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL 174 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 174 (349)
|+...+.|.+.|...|++..+..+...+...... .-...|..+.++|-..|++++|...|.+..+.....-...+--+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 4555555666666666666666666655544211 11234555666666666666666666665544211112233445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG----DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
...+.+.|+.+.+...|+.+.+..+. +..+...|...|...+ ..+.|..++....+.. +.|...|..+...+-.
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 56666666666666666666555322 4555555555555443 2344455554444332 3445555555554433
Q ss_pred cCChhhHHHHHHHHh----hCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC------CHHHHHHHHHH
Q 018882 251 AGKPEKLGSVLRFID----NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR---GCKP------DKVTYRTMVRA 317 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p------~~~~~~~l~~~ 317 (349)
+++..+..++..+. ..+..+.+...|.+...+...|.+..|...|+..... ...+ +..+-..+...
T Consensus 427 -~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 -TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred -cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 33333344443332 2333355666666777777777777777766666543 1111 22222334444
Q ss_pred HHhcCchhhhHHHHHHHHHHhhhh
Q 018882 318 YSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
+...++++.|.+.+..+.+-.+..
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchh
Confidence 555566666666666665544433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-10 Score=96.13 Aligned_cols=288 Identities=11% Similarity=-0.024 Sum_probs=228.9
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHH
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL 104 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (349)
.++.....-.+-+...+++++..++++...+.. +++...+..-|.++...|+..+...+=.+|.+. .|-.+.+|-++
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 355556666677888999999999999998876 677777777788999999998888888888877 35578899999
Q ss_pred HHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (349)
...|.-.|...+|.+.|.+....+ +.=...|-.+...|+-.|..++|...+...-+.= +-...-+-.+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 999999999999999999987553 2224578888999999999999999988876641 11212223344457889999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCcHHHHHHHHHHHHhcCChhhHH
Q 018882 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE------RIKPSCVTLCSLVRAYGHAGKPEKLG 258 (349)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~ 258 (349)
+-|.+.|.+.....+. |+..++-+.-.....+.+.+|..+|+..... .......+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999998876533 7888888887777889999999999887621 11124567899999999999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 321 (349)
..++....... -+..++.++.-.|...|+++.|.+.|.+.... .|+..+-..++..+...
T Consensus 476 ~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 476 DYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHHh
Confidence 99999887764 48899999999999999999999999988754 78887777777655443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-10 Score=93.43 Aligned_cols=327 Identities=9% Similarity=0.021 Sum_probs=264.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDA--NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+.|.+-.+..+.......|+.. --.+|..-.+.|.+.+.++-|..+|....+.. +-+...|......--..|..+.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHHH
Confidence 4566777778888887776543 25688888999999999999999999998864 5567778888877777899999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
...+|++.... ++.....|......+-..|+...|..++.+..+.. +.+...|..-++.-..+.+++.|..+|.+...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 99999999887 45566778888888888999999999999999876 45788899999999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018882 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
. .|+...|.--+....-.+..++|.+++++..+.- +.-...|-.+.+.+-+.++.+.|.+.|..-... ++-....|
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 4 6788888888888888899999999999888763 335678888899999999999999988765433 35556778
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--------------
Q 018882 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----G-------------- 303 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-------------- 303 (349)
..+...=-+.|.+-.|..+++...-.++. +...|-..|+.-.+.|..+.|..+..+..+. |
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 88888778889999999999999877754 8899999999999999999998776655432 1
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 304 -----------CKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 304 -----------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+.-|+.....+...+.....++.|.+.|.+..+.++
T Consensus 802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 234566666666777777778888887777665543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-10 Score=93.59 Aligned_cols=278 Identities=12% Similarity=0.047 Sum_probs=204.7
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHc-CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSA-YGR-SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF 79 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 79 (349)
|.++|+++.|++++.-+.+.+-+.....-+.|-.. |.+ -.++..|.+.-+...... .-+......-.......|++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcH
Confidence 45788888888888877765433323333333322 222 346777777777666543 33444444444445567899
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018882 80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
++|...+.+.....-.-....||. --.+-..|++++|+..|-++... +..+..+...+...|....+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999887633322333332 23456789999999999887643 2456777788889999999999999999887
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH
Q 018882 160 QSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (349)
... ++.|+.+.+-|...|-+.|+-..|.+.+-+--+. ++-+..+...|...|....-+++++.+|++..- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 765 5678999999999999999999999887654443 455888999999999999999999999998643 589999
Q ss_pred HHHHHHHHH-HhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC
Q 018882 240 TLCSLVRAY-GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 240 ~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
-|..++..| .+.|++.+|..+++.+... ++-|......|++.+...|-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 998887655 5789999999999998865 55688888888888877764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-13 Score=77.51 Aligned_cols=50 Identities=30% Similarity=0.549 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 320 (349)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888999999999999999999999999988999999999999888864
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-13 Score=77.06 Aligned_cols=50 Identities=40% Similarity=0.685 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 018882 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR 110 (349)
Q Consensus 61 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (349)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-09 Score=85.14 Aligned_cols=322 Identities=11% Similarity=0.080 Sum_probs=184.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~ 83 (349)
++++..|..+|++.+... ..+...|-.-+.+=.++..+..|..+|+..... -|-+ ..|---+..--..|++..|.
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHHH
Confidence 466778888888888764 456777777777777888888888888877764 3332 33444444444567778888
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA- 162 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 162 (349)
++|++-.+- .|+...|++.++.=.+.+.++.|..+|++..-- .|++.+|-...+.-.+.|+...+..+|....+.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 888777664 677788888887777777788888888777643 577777777776667777777777777665543
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------------------------------------hc
Q 018882 163 GI-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQ--------------------------------------------KY 197 (349)
Q Consensus 163 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------------------------------------~~ 197 (349)
|- ..+...+.++...-.++..++.|.-+|+-.. +.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 10 0011122222222223333333333333222 22
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH--HHHHHH--------HHHHhcCChhhHHHHHHHHhhC
Q 018882 198 HYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV--TLCSLV--------RAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
+ +.|..+|--.+..-...|+.+...++|++.... ++|-.. .|...| -.=....+.+.+.++++...+.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 2 225566666676667777777777777777654 344211 111111 1112345666666666655542
Q ss_pred CCCchHHHHHHH----HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 268 DIMLDTVFFNCL----VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 268 ~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
++....+|..+ ...-.++.+...|.+++-..+ |..|-..+|...|..-.+.+.++....+++++.+.++
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 22222232222 222234455555555554443 3455555666666555555666666666655555444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-09 Score=88.07 Aligned_cols=303 Identities=11% Similarity=-0.013 Sum_probs=180.1
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-hHHHHHHHH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLID 106 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 106 (349)
.+.....-|.++|.+++|++.|.+.... .|+ +..|.....+|...|+|+++.+.-.+..+. .|+ ...+..-.+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHH
Confidence 3445666788999999999999999987 577 888999999999999999998877776665 333 223444445
Q ss_pred HHhccCcHHHHHH----------------------HHHH---------Hhcc--CCCcchhhHHHHHHHHHc--------
Q 018882 107 AYGRAKMFAEMEL----------------------TLVK---------MLSE--DCEPDVWTMNCTLRAFGN-------- 145 (349)
Q Consensus 107 ~~~~~~~~~~a~~----------------------~~~~---------~~~~--~~~~~~~~~~~l~~~~~~-------- 145 (349)
++-..|++++|+. ++.+ +... .+.|+.....+....+..
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 5555555555542 2211 1111 123444333333332210
Q ss_pred cC--------------------CHHHHHHHHHHHHh---cCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 146 SG--------------------QIDTMEKCYEKFQS---AGIQPS---------INTFNILLDSYGKAGHFEKMSAVMEY 193 (349)
Q Consensus 146 ~~--------------------~~~~a~~~~~~~~~---~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~ 193 (349)
.+ .+..+...+.+-.. .....+ ..+...-...+.-.|+.-.|..-|+.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 00 11112111111100 001111 22222223334456777777777777
Q ss_pred HHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchH
Q 018882 194 MQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT 273 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (349)
..+....+ ...|--+...|....+.++.+..|+.....+ +-++.+|..-.+...-.+++++|..-|+..+...+ -+.
T Consensus 352 ~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~ 428 (606)
T KOG0547|consen 352 AIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENA 428 (606)
T ss_pred HHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhh
Confidence 77665442 2236666666777777777777777776554 34556666666666666777777777777766543 255
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
..|-.+..+..+.+++++++..|++.+.. ++--+..|+.....+..+++++.|.+.++...++.+.
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 56666666666777777777777777665 3334566777777777777777777777777666554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-09 Score=79.80 Aligned_cols=200 Identities=15% Similarity=0.012 Sum_probs=125.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
...+.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+..+. +-...|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3344555666777777777777766654 335556666666677777777777777766665433 55666666666677
Q ss_pred cCChHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 216 AGDLKQMEYLFRLMRSERI-KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
.|++++|...|++...... .--..+|..+.-+..+.|+.+.|...+++..+.... .+...-.+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 7777777777766655421 112356666666666777777777777766665432 34445556666667777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 295 VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 295 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.++.....+. ++..+....|+.-...|+.+.+.++-..+.+.-+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 7766666544 5666666666666666777666666665555443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.5e-10 Score=94.14 Aligned_cols=238 Identities=15% Similarity=0.103 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----CC-CCchH-HHHHHHHHHhccCcHHHHHHHHHHHhcc-----C--
Q 018882 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQ-----GI-RPNTV-TYNTLIDAYGRAKMFAEMELTLVKMLSE-----D-- 128 (349)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-- 128 (349)
..+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777788888888888777776554 21 22333 2334667778888888888888877643 1
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C
Q 018882 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA-----GI-QPS-INTFNILLDSYGKAGHFEKMSAVMEYMQKY---H 198 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 198 (349)
.+.-..+++.|...|.+.|++++|...++...+. |. .|. ...++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1223456777777888888888877777665432 11 122 233566777788888899888888765432 1
Q ss_pred CCC----chhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh-
Q 018882 199 YSW----TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-----R--IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN- 266 (349)
Q Consensus 199 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 266 (349)
+.+ -..+++.+...|...|++++|.++++.+... + ..-....++.+...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 122 2467888999999999999999998887542 1 122245677888888888888888888876432
Q ss_pred ---CCC--CchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 267 ---SDI--MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 267 ---~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
.|+ +-...+|..|...|.+.|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 2235678889999999999999998887765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-09 Score=86.39 Aligned_cols=222 Identities=10% Similarity=-0.013 Sum_probs=115.8
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHH
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPD--VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE 116 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (349)
..+..+.++.-+.++.......|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 334555666666655543222222 2345555566666677777776666666653 2345666666666677777777
Q ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
|...|++..+.. +-+..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...+.....
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 777776666543 2234455556666666677777777776666543 2221111122223345566677766655433
Q ss_pred cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CC---CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018882 197 YHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE---RI---KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 269 (349)
.. .|+...+ .+. ....|+...+ ..+..+.+. .+ +.....|..+...+...|++++|...|+...+.++
T Consensus 194 ~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 KL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 21 1221111 111 2223444333 233333211 00 11234566677777777777777777777766553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-09 Score=88.70 Aligned_cols=272 Identities=8% Similarity=-0.022 Sum_probs=215.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
..+++.+..++++.+.+.. +++...+..-|.++...|+..+-..+=.++.+.. |....+|-.+.-.|...|+..+|.
T Consensus 256 ~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHHHH
Confidence 4678999999999998874 7788888888889999999888888888888764 566788999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
+.|.+...... .=...|-.....|+-.+..++|...+....+-- +-...-+-.+.--|.+.++.+.|.++|.+.....
T Consensus 333 ry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 333 RYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 99998766531 134578888999999999999999988776541 1111122334455788999999999999988763
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC----CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 018882 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY--HYS----WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 237 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (349)
+.|+...+.+.-.....+.+.+|...|+..... ... .-..+++.|..++.+.+.+++|+..++...... +.+
T Consensus 411 -P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~ 488 (611)
T KOG1173|consen 411 -PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKD 488 (611)
T ss_pred -CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCc
Confidence 557888888887788889999999999877621 111 134568899999999999999999999988765 678
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018882 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
..++.++.-.+...|+++.|.+.|.+.... .|+-.+...++..+.
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 899999999999999999999999988764 567666666665443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.3e-09 Score=83.91 Aligned_cols=227 Identities=9% Similarity=-0.044 Sum_probs=160.5
Q ss_pred CChhHHHHHHHHHHhcC-CCCc--hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHH
Q 018882 77 FAFDKVQALLSDMSTQG-IRPN--TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
+..+.+..-+.+++... ..|+ ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777777777542 1222 4567778888999999999999999998775 456788999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
..|++..+.. +-+..++..+..++...|++++|.+.++...+..+. ..............+++++|...+.......
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~--~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN--DPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999998864 335677888888899999999999999999876533 2222222223445678999999997755432
Q ss_pred CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh---CCCC---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018882 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN---SDIM---LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 307 (349)
.|+...+ . ......|+...+ ..+..+.+ ..+. .....|..+...+.+.|++++|...|++....++ ||
T Consensus 196 -~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~ 269 (296)
T PRK11189 196 -DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YN 269 (296)
T ss_pred -CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ch
Confidence 3332222 2 233345666554 34444442 1111 1346899999999999999999999999998753 35
Q ss_pred HHHHHH
Q 018882 308 KVTYRT 313 (349)
Q Consensus 308 ~~~~~~ 313 (349)
..-+..
T Consensus 270 ~~e~~~ 275 (296)
T PRK11189 270 FVEHRY 275 (296)
T ss_pred HHHHHH
Confidence 555444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-08 Score=81.38 Aligned_cols=291 Identities=9% Similarity=-0.024 Sum_probs=179.1
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-hHHHHHHHHHHhccCcHHHHH
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEME 118 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 118 (349)
.++...|...+--+......+-|......+..++...|+.++|...|++.... .|+ ........-.+.+.|+.+...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444444444333333344566777778888888888888888888877654 222 222222333445667777777
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
.+...+.... .-....|..-.......++++.|+.+-++.++.. +.+...+-.-.+.+...+++++|.-.|+..+...
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 6666665432 2333344444445556677778887777777653 2344555555566777888888888888777654
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH-HHH-HhcCChhhHHHHHHHHhhCCCCchHHHH
Q 018882 199 YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV-RAY-GHAGKPEKLGSVLRFIDNSDIMLDTVFF 276 (349)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (349)
+ -+...|.-|+..|...|.+.+|...-+..... .+.+..+.+.+. ..| .....-++|.++++......+ .-....
T Consensus 365 p-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P-~Y~~AV 441 (564)
T KOG1174|consen 365 P-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP-IYTPAV 441 (564)
T ss_pred h-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC-ccHHHH
Confidence 2 26778888888888888888877666554332 123344444331 122 122234567777776655432 123455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 277 NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+.+...+...|..+.+..+++..... .||....+.|.+.+...+.+.+|.+.+....++++
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 66677777777778888877776654 56777777777777777777777777766655544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.6e-08 Score=80.48 Aligned_cols=308 Identities=12% Similarity=-0.007 Sum_probs=186.7
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHH--
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVN-TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT-- 103 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 103 (349)
...|..+...+...|+.+.+.+.+..........++.. ........+...|++++|.+++++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 45566677777777888887777766654422122322 22223445667899999999999988763 334444442
Q ss_pred -HHHHHhccCcHHHHHHHHHHHhccCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 104 -LIDAYGRAKMFAEMELTLVKMLSEDCEPD-VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 104 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
+.......+....+.+.+.... ...|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 1222222455555555555421 22233 3344455667889999999999999998875 44667788888899999
Q ss_pred CCHHHHHHHHHHHHhcCCC-Cc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCcHHHH-H--HHHHHHHhcCCh
Q 018882 182 GHFEKMSAVMEYMQKYHYS-WT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-KPSCVTL-C--SLVRAYGHAGKP 254 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~ 254 (349)
|++++|...+++....... |+ ...|..+...+...|++++|..+++....... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 9999999999988765422 22 23455678888999999999999999864332 1222111 1 233334444544
Q ss_pred hhHHHH--H-HHHhhCCC-CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCHHHHHHHH--HHHHhcC
Q 018882 255 EKLGSV--L-RFIDNSDI-MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK------PDKVTYRTMV--RAYSTNG 322 (349)
Q Consensus 255 ~~a~~~--~-~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------p~~~~~~~l~--~~~~~~g 322 (349)
+.+.+. + ........ ............++...|+.+.|..+++.+...... ....+-..++ .++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333333 1 21111100 111222235677788899999999999988764221 0111222233 3467889
Q ss_pred chhhhHHHHHHHHHHh
Q 018882 323 MKNHAKEFQDLVEKMD 338 (349)
Q Consensus 323 ~~~~a~~~~~~~~~~~ 338 (349)
+++.|.+.+.......
T Consensus 322 ~~~~A~~~L~~al~~a 337 (355)
T cd05804 322 NYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999887765543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.1e-09 Score=76.18 Aligned_cols=198 Identities=16% Similarity=0.018 Sum_probs=126.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 101 YNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180 (349)
Q Consensus 101 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (349)
...|.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3445556667777777777777776664 4455666666677777777777777777766653 3355666666666777
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 181 AGHFEKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
.|++++|...|+...... ..-...+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 777777777776665432 22234566666666667777777777777766554 2333455566666667777777777
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.++.....+. ++..+.-..|+.-...|+.+.+-+.=..+.+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7776666554 56666666666666677766666655555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-08 Score=83.60 Aligned_cols=333 Identities=13% Similarity=0.063 Sum_probs=193.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cCChhHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK-AFAFDKV 82 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a 82 (349)
.+|+++.+.+.|++.... .......|+.+...+...|.-..|..+.+.-.....-+++...+-..-..|.+ .+..+++
T Consensus 335 ~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eeg 413 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEG 413 (799)
T ss_pred HHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhH
Confidence 456666666666665543 22344556666666666666666666666554432212333333333333333 3445555
Q ss_pred HHHHHHHHhc--CC--CCchHHHHHHHHHHhcc-----------CcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC
Q 018882 83 QALLSDMSTQ--GI--RPNTVTYNTLIDAYGRA-----------KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG 147 (349)
Q Consensus 83 ~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (349)
+.+-.+.... +. ......|..+.-+|... ....++++.+++..+.+ +.|......+.--|+..+
T Consensus 414 ldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R 492 (799)
T KOG4162|consen 414 LDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQR 492 (799)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHH
Confidence 4444444331 10 11222233333333211 11334455555554443 222222223333445556
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC---------------------------
Q 018882 148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY-HY--------------------------- 199 (349)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--------------------------- 199 (349)
+++.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+..... +.
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 66666666666666544556666666666665566655555554432210 00
Q ss_pred ------------------------------------------------------------------C--Cc------hhh
Q 018882 200 ------------------------------------------------------------------S--WT------IVT 205 (349)
Q Consensus 200 ------------------------------------------------------------------~--~~------~~~ 205 (349)
. |+ ...
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 0 00 112
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
|......+.+.++.++|...+.+..... +.....|......+...|..++|.+.|......++ -++....++...+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP-~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP-DHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344455556666666666666654332 34445566666677778888899998888877654 366788899999999
Q ss_pred cCCHHHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhh
Q 018882 286 LKCFAEMKG--VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 286 ~g~~~~a~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
.|+..-|.. ++.++.+.+.. ++..|..+...+.+.|+.+.|.+.|+-..++.++.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 998888877 99999988744 89999999999999999999999999999888753
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-08 Score=79.85 Aligned_cols=271 Identities=9% Similarity=-0.005 Sum_probs=205.2
Q ss_pred CCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHH
Q 018882 23 CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY 101 (349)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (349)
++-|+.....+..++...|+.++|+..|++.... .|+. .....-.-.+.+.|+.+....+...+.... .-+...|
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 4567888999999999999999999999998866 3433 233333334567888998888888887652 2345555
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 102 NTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 102 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
-.-.......++++.|+.+-++.++.. +.+...+-.-...+...++.++|.-.|....... +-+...|.-|+..|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 555566667789999999999988765 4445555555567788999999999999887753 45789999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHH-HHHH-hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVI-DAFG-RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
|++.+|..+-+...+. ++.+..+...+. ..+. ....-++|..+++...... +.-....+.+...|...|..+.++.
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHH
Confidence 9999998877665443 223566666553 2222 2334578899988876543 2334667788889999999999999
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 303 (349)
+++..... .||....+.|...+...+.+++|++.|....+.+
T Consensus 460 LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 460 LLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99988764 4799999999999999999999999999888774
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.7e-08 Score=80.43 Aligned_cols=291 Identities=13% Similarity=0.047 Sum_probs=178.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cC
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQ---SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AF 77 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~ 77 (349)
.|+.+.+.+.+....+.. +++.. ........+...|++++|.+.+++..... |.+...+.. ...+.. .+
T Consensus 19 ~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~~~~~~~~~~~ 94 (355)
T cd05804 19 GGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HLGAFGLGDFSG 94 (355)
T ss_pred cCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hHHHHHhccccc
Confidence 466777777776665542 22222 22233445678899999999999988763 344444442 222222 34
Q ss_pred ChhHHHHHHHHHHhcCCCCc-hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 018882 78 AFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
..+.+.+.+.. .....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+
T Consensus 95 ~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 95 MRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred CchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45555555544 1122233 3444556678889999999999999999875 455677888889999999999999999
Q ss_pred HHHHhcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCchhhH-H--HHHHHHHhcCChHHHHHH--HH
Q 018882 157 EKFQSAGI-QPSI--NTFNILLDSYGKAGHFEKMSAVMEYMQKYHY-SWTIVTY-N--IVIDAFGRAGDLKQMEYL--FR 227 (349)
Q Consensus 157 ~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~~ 227 (349)
++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+... +.
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~ 251 (355)
T cd05804 172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLA 251 (355)
T ss_pred HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHH
Confidence 99877532 1232 3455788889999999999999999864432 1112111 1 223333344433332222 21
Q ss_pred HHHhCCC--CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC------c--hHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 228 LMRSERI--KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM------L--DTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 228 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
....... ............++...|+.+.|..+++.+...... . .....-....++...|++++|.+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~ 331 (355)
T cd05804 252 DYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLG 331 (355)
T ss_pred HHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1111110 111222235677788999999999999887653211 0 11222233344668999999999998
Q ss_pred HHHhc
Q 018882 298 VMQQR 302 (349)
Q Consensus 298 ~m~~~ 302 (349)
.....
T Consensus 332 ~al~~ 336 (355)
T cd05804 332 PVRDD 336 (355)
T ss_pred HHHHH
Confidence 87754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-07 Score=77.67 Aligned_cols=192 Identities=10% Similarity=0.032 Sum_probs=109.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+...|+-++|.+....-...+ ..+.+.|+.+.-.+....++++|++.|......+ +.|...+.-+.-.-++.++++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhh
Confidence 345677777777776666543 4566778887777777788888888888877664 5566666666555566667666
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccC-CCcchhhHHHHH------HHHHccCCHHHHHH
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWTMNCTL------RAFGNSGQIDTMEK 154 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~ 154 (349)
......++.+.. +-....|.....++.-.|+...|..+++...+.. ..|+...+.... ......|..+.|.+
T Consensus 128 ~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 128 YLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 666666665542 2234455666666666777777777777666543 234443333222 12234444455544
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 155 CYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
.+..-... +......-.+-...+.+.+++++|..++..+...+
T Consensus 207 ~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 207 HLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 44332221 11111112223344455566666666666665543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-08 Score=78.67 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=71.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHh
Q 018882 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFF-NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYR-TMVRAYST 320 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~ 320 (349)
.+.++.+..|++.+|+++|-.+....++ |..+| ..|.++|.+++.++.|+.++-.+.. +.+..+.. .+..-|.+
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHH
Confidence 4667778889999999999888776665 44555 5567889999999999777644432 22444433 44456888
Q ss_pred cCchhhhHHHHHHHHHHhhhhhcc
Q 018882 321 NGMKNHAKEFQDLVEKMDETCLAM 344 (349)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~ 344 (349)
.+.+=-|.+.|+.++.+++++.-.
T Consensus 474 ~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred HHHHHHHHHhhhHHHccCCCcccc
Confidence 899989999999999999876543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-09 Score=83.13 Aligned_cols=251 Identities=12% Similarity=0.076 Sum_probs=144.3
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
+-+.-.|++..++.-.+ .....+ ..+......+.+++...|+.+.+. .++.... .|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~-~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSP-ENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTC-HHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCc-hhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 33445677777776555 322211 222334455667777777766443 3333332 55666665555555443455
Q ss_pred HHHHHHHHHHhccCCC-cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 115 AEMELTLVKMLSEDCE-PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEY 193 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 193 (349)
+.+..-+++....... .+.........++...|++++|+++++.. .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555444322 23333333334566677888777766542 3556666777778888888888888888
Q ss_pred HHhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018882 194 MQKYHYSWTIVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 269 (349)
|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|..++......+.
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 77653 23334444444432 23577888888886543 456777777777778888888888888877766554
Q ss_pred CchHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 018882 270 MLDTVFFNCLVDAYGRLKCF-AEMKGVLEVMQQR 302 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 302 (349)
. ++.+...++.+....|+. +.+.+.+.++...
T Consensus 233 ~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 N-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred C-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3 566666677776777766 5566777777655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-09 Score=86.62 Aligned_cols=253 Identities=8% Similarity=0.050 Sum_probs=167.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018882 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455788888886665 222222223445566778999999877644 4444333 666666655555554445555
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 151 TMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
.+..-++........+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554444333232 3333333335566789999999888643 36777788899999999999999999999
Q ss_pred HhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018882 230 RSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305 (349)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 305 (349)
.+.. +..+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++....+..
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 8653 33455556665543 33689999999998775 4578899999999999999999999999998876533
Q ss_pred CCHHHHHHHHHHHHhcCch-hhhHHHHHHHHHHhh
Q 018882 306 PDKVTYRTMVRAYSTNGMK-NHAKEFQDLVEKMDE 339 (349)
Q Consensus 306 p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~ 339 (349)
++.+...++.+....|+. +.+.+++..+.+..+
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 677888888888888887 667778777766544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.9e-10 Score=95.49 Aligned_cols=259 Identities=15% Similarity=0.165 Sum_probs=183.2
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccC
Q 018882 49 LLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
++-.+... |+.|+-.+|..++..|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34444444 77999999999999999999999998 9999988888889999999999998888877664
Q ss_pred CCcchhhHHHHHHHHHccCCHHH---HHHHHHHH----HhcCCCCCHHHH--------------HHHHHHHHhcCCHHHH
Q 018882 129 CEPDVWTMNCTLRAFGNSGQIDT---MEKCYEKF----QSAGIQPSINTF--------------NILLDSYGKAGHFEKM 187 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a 187 (349)
.|...+|+.+..+|...||... +.+.+..+ ...|+......+ ...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999765 22222222 222322111111 1122223334445555
Q ss_pred HHHHHHHHhcCC-CCchhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 188 SAVMEYMQKYHY-SWTIVTYNIVIDAFGRAG-DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 188 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
.+++..+..... .|... +++-+.... .+++...+.+...+ .|+..+|..++.+-..+|+.+.|..++.+|.
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 555544432211 11111 233332222 23333333333332 5899999999999999999999999999999
Q ss_pred hCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHH
Q 018882 266 NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 266 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
+.|++.+.+.|..|+.+ .++...+..++.-|...|+.|+..|+.-.+-.+..+|....+.+.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~ 293 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG 293 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc
Confidence 99999999888888766 888889999999999999999999999888888887765554443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-06 Score=73.80 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=39.0
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEH 52 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 52 (349)
+.+.|++++|++..+++...+ +-+...+..-+-++.+.+.+++|+.+.+.
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk 71 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK 71 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh
Confidence 467889999999999998875 55566777777778888888888866544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-06 Score=74.01 Aligned_cols=327 Identities=13% Similarity=0.123 Sum_probs=224.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 84 (349)
.+++...+.+.+.+.+. .+-...+.....-.+...|+-++|....+.....+ ..+.++|..+.-.+-...++++|++
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHH
Confidence 45666777777777763 44556666666666778899999999998877653 5677889988888888899999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-
Q 018882 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG- 163 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 163 (349)
.|......+ +-|...+.-+.-.-++.++++.......+..+.. +.....|..+..++.-.|++..|..+++...+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999875 4477888888777788888888888777777653 3445678888888899999999999999988765
Q ss_pred CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 018882 164 IQPSINTFNILL------DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 237 (349)
Q Consensus 164 ~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (349)
..|+...+.-.. ....+.|..+.|.+.+......-+. ....-..-...+.+.+++++|..++..+... .||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 246666654433 3345678888888777665443211 2223334455677888899999998888765 355
Q ss_pred HHHHHHHH-HHHHh-cCChhhHHHHHH----------------------------------HHhhCCC------------
Q 018882 238 CVTLCSLV-RAYGH-AGKPEKLGSVLR----------------------------------FIDNSDI------------ 269 (349)
Q Consensus 238 ~~~~~~l~-~~~~~-~~~~~~a~~~~~----------------------------------~~~~~~~------------ 269 (349)
..-|.... .++.+ .+..+....++. ...+.|+
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk 331 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK 331 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh
Confidence 44443322 22211 111111101111 1111111
Q ss_pred ----------------------------------CchHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHH
Q 018882 270 ----------------------------------MLDTVFF--NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK-VTYR 312 (349)
Q Consensus 270 ----------------------------------~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~ 312 (349)
+|.+..| ..++..|-+.|+++.|..+++...+. .|+. ..|.
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~ 409 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYL 409 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHH
Confidence 2334433 45677888899999999999988876 5553 4455
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHhhhh
Q 018882 313 TMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
.=.+.+...|+.+.|..+++...+++..-
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 55678899999999999999988887543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-07 Score=72.00 Aligned_cols=281 Identities=12% Similarity=0.085 Sum_probs=161.4
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHH-HHHHHHhcCChhHHHH
Q 018882 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI-LIKSCLKAFAFDKVQA 84 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~ 84 (349)
.+++.|++++..-.++. +.+......|..+|....++..|-+.++++... .|...-|.. -...+.+.+.+..|+.
T Consensus 24 ~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred hhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 34445555555444442 224445555555555555555555555555543 344333332 2334445555555555
Q ss_pred HHHHHHhcCCCCchHHHHHHHHH--HhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 85 LLSDMSTQGIRPNTVTYNTLIDA--YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
+...|... |+...-..-+.+ ....+++..+..++++....+ +..+.+...-...+.|+++.|.+-|+...+-
T Consensus 100 V~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 100 VAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 55554432 111111111111 123345555555555443222 2333333334456889999999999988876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------c---------------hhhHHHHHHHHH
Q 018882 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-------------T---------------IVTYNIVIDAFG 214 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~l~~~~~ 214 (349)
+--.....|+..+ ++.+.++.+.|.+...++.++|++. | +..+|.-...+.
T Consensus 174 sGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey 252 (459)
T KOG4340|consen 174 SGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY 252 (459)
T ss_pred cCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence 5444566777555 4557789999999998888776531 1 123444444456
Q ss_pred hcCChHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 018882 215 RAGDLKQMEYLFRLMRSE-RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 293 (349)
+.++++.|.+.+-+|.-+ ....|+.|...+.-.- ..+++....+-+..+...++ ....+|..++-.||+..-++.|.
T Consensus 253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred hcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHH
Confidence 788899999888888532 2345667776654322 23456666666666666655 35678888888999999999998
Q ss_pred HHHHHH
Q 018882 294 GVLEVM 299 (349)
Q Consensus 294 ~~~~~m 299 (349)
.++.+-
T Consensus 331 DvLAEn 336 (459)
T KOG4340|consen 331 DVLAEN 336 (459)
T ss_pred HHHhhC
Confidence 887653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.6e-07 Score=83.33 Aligned_cols=334 Identities=10% Similarity=0.003 Sum_probs=202.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-----CCCH--HHHHHHHHHHHhcC
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-----QPDV--NTYSILIKSCLKAF 77 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~--~~~~~ll~~~~~~~ 77 (349)
.|+++.+...++.+.......++.........+...|+++++...+......... .+.. .....+...+...|
T Consensus 387 ~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 466 (903)
T PRK04841 387 QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG 466 (903)
T ss_pred cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC
Confidence 4555555555555421111112223334455566788999998888876542110 1111 12222334556789
Q ss_pred ChhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHhccCcHHHHHHHHHHHhccCC---Cc--chhhHHHHHHHHHccCC
Q 018882 78 AFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC---EP--DVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~ 148 (349)
+++.|...+++....-...+ ....+.+...+...|++++|...+.+...... .+ ....+..+...+...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 99999999988766311112 12345566667788999999998888764311 11 12344556677888999
Q ss_pred HHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchhhHHHHHHHHHhcC
Q 018882 149 IDTMEKCYEKFQSA----GIQ--P-SINTFNILLDSYGKAGHFEKMSAVMEYMQKY----HYSWTIVTYNIVIDAFGRAG 217 (349)
Q Consensus 149 ~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~ 217 (349)
++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+...+...|
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 99999988876542 211 1 2233445566677789999999988876542 11112344555666778899
Q ss_pred ChHHHHHHHHHHHhC--CCCCcHH--HH--HHHHHHHHhcCChhhHHHHHHHHhhCCCCch---HHHHHHHHHHHHhcCC
Q 018882 218 DLKQMEYLFRLMRSE--RIKPSCV--TL--CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD---TVFFNCLVDAYGRLKC 288 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~--~~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 288 (349)
+++.|...+...... ....... .. ...+..+...|+.+.|...+........... ...+..+..++...|+
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 706 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ 706 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC
Confidence 999999988877532 1111110 10 1122344557888888888776554221111 1123456777888999
Q ss_pred HHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCchhhhHHHHHHHHHHh
Q 018882 289 FAEMKGVLEVMQQR----GCKPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 289 ~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
+++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+....++.
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999998887654 33222 3456667778899999999988888776654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-08 Score=81.95 Aligned_cols=253 Identities=10% Similarity=0.029 Sum_probs=158.7
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
.-+.+.|++.+|.-.|+...+.. |.+...|..|.......++-..|+..+.+..+.. +-|......|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34567777777777777776653 5567777777777777777777777777777663 33566666777777777777
Q ss_pred HHHHHHHHHHhccCCC--------cchhhHHHHHHHHHccCCHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018882 115 AEMELTLVKMLSEDCE--------PDVWTMNCTLRAFGNSGQIDTMEKCYEK-FQSAGIQPSINTFNILLDSYGKAGHFE 185 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (349)
.+|++.++..+....+ ++...-.. +.+..........++|-+ ....+..+|..+...|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 7777777766543210 00000000 111222223333333333 344444467777777777777788888
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018882 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-CVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
+|.+.|+......+. |...||.|...++...+..+|+..|++.++. .|+ +.+...|.-+|...|.+++|...|-.+
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 888888887776544 7778888888888888888888888887764 333 344455666777888888877766554
Q ss_pred hhC---------CCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 018882 265 DNS---------DIMLDTVFFNCLVDAYGRLKCFAEMKGV 295 (349)
Q Consensus 265 ~~~---------~~~~~~~~~~~li~~~~~~g~~~~a~~~ 295 (349)
+.. ...++..+|..|=.++...++.+.+..+
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 321 1223456777776677777776655444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-06 Score=72.18 Aligned_cols=199 Identities=11% Similarity=0.110 Sum_probs=114.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----------
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS---INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS----------- 200 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------- 200 (349)
.|..+.+.|-..|+++.|..+|++..+-..+-- ..+|.....+-.+..+++.|.++++......-.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 456666777777777777777777766543221 334444455555566677777766655322111
Q ss_pred ------CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch-H
Q 018882 201 ------WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD-T 273 (349)
Q Consensus 201 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 273 (349)
-+...|...++..-..|-++....+++.+.+..+ .++........-+-...-++++.+++++-+..-..|+ .
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1234566666666666777777777777776654 2333333333334445556677777766554422233 3
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcCchhhhHHHHHHHH
Q 018882 274 VFFNCLVDAYGR---LKCFAEMKGVLEVMQQRGCKPDKVTYRTMV--RAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 274 ~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~ 335 (349)
..|+..+..+.+ ....+.|..+|++..+ |++|...-+-.|+ ..=.+.|....|..++++..
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 466666655554 2367889999999988 6666543222222 22244577777777777643
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.1e-08 Score=73.53 Aligned_cols=294 Identities=14% Similarity=0.079 Sum_probs=202.0
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHH-HHH
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT-LID 106 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~ 106 (349)
.-+.+.+..+.+..++++|++++..-.+.. +.+....+.+..+|....++..|...++++-.. .|...-|.. -..
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 346777788888999999999998887763 347788899999999999999999999999876 456555544 245
Q ss_pred HHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018882 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
.+.+.+.+.+|+++...|.+.. ..-......-.......+++..+..++++....| +..+.+.......+.|+++.
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6678899999999999887541 1111122222223346788888888888766433 44455555556678999999
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-------------CcHH--------HHHHHH
Q 018882 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK-------------PSCV--------TLCSLV 245 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~l~ 245 (349)
|.+-|....+.+--.....|+..+..| +.++++.|++...+++++|++ ||.. .-+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999887654333567788766554 678999999999999887643 1211 112333
Q ss_pred HH-------HHhcCChhhHHHHHHHHhhC-CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018882 246 RA-------YGHAGKPEKLGSVLRFIDNS-DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRA 317 (349)
Q Consensus 246 ~~-------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 317 (349)
++ +.+.++++.|.+.+..|.-. ....|+.+...+.-.- ..+++.+..+-+.-+...+.- ...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 33 45678888888888777532 2334666665543222 234455555556666665443 47889999999
Q ss_pred HHhcCchhhhHHHHH
Q 018882 318 YSTNGMKNHAKEFQD 332 (349)
Q Consensus 318 ~~~~g~~~~a~~~~~ 332 (349)
|+++.-++.|..++.
T Consensus 320 yCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLA 334 (459)
T ss_pred HhhhHHHhHHHHHHh
Confidence 999988888877653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.4e-08 Score=82.28 Aligned_cols=225 Identities=11% Similarity=-0.008 Sum_probs=172.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (349)
.-..+...+...|-..+|..++++.. .|..++.+|...|+..+|..+..+..+. +|+...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456677788888889988888764 4667888899999999999998888773 788888988888877
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
...-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|..+.-+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888765432 11112222234688888888888776654 4556788888888888899999988
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.|.......+ -+...||.+-.+|.+.++-.+|...+.+..+.+. -+...|...+......|.+++|.+++..+..+..
T Consensus 541 aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 541 AFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 8888876543 3677899999999999999999999999888873 3666777777788888999999999998888877
Q ss_pred hhhccC
Q 018882 340 TCLAMK 345 (349)
Q Consensus 340 ~~~~~~ 345 (349)
.....+
T Consensus 619 ~~~d~~ 624 (777)
T KOG1128|consen 619 KYKDDE 624 (777)
T ss_pred hcccch
Confidence 655433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.5e-07 Score=72.01 Aligned_cols=215 Identities=9% Similarity=-0.063 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC-cHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAF 143 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (349)
++..+-..+...+..++|+.+..++++.. +-+..+|+..-.++...| .+++++..++++.+.. +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 34444455556677788888888877753 224445555555555555 5677888777777664 33444565554445
Q ss_pred HccCCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc---CC
Q 018882 144 GNSGQI--DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA---GD 218 (349)
Q Consensus 144 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 218 (349)
.+.|.. +++..+++++.+.. +-+..+|+.....+...|+++++++.++++.+.++. +...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 555542 55677777777664 336777777777777777777777777777776654 566666665554443 22
Q ss_pred h----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc----CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 219 L----KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA----GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 219 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
. ++...+...++... +-|...|+.+...+... ++..+|..++......++ .+......|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 2 34455554554443 34555666665555552 233446566655554432 245555556666554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.6e-06 Score=69.19 Aligned_cols=328 Identities=14% Similarity=0.092 Sum_probs=209.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 81 (349)
...|+++.|+..|-...... ++|...|..-..+|...|++++|++=-.+..+. .|+ ...|+....++.-.|++++
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred cccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcccHHH
Confidence 56899999999999998875 568888999999999999999999887777765 455 4678999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccC-------------------------------------------------
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAK------------------------------------------------- 112 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------------------------- 112 (349)
|..-|.+-++.. +-|...+..+..++....
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999998877763 334455555555541110
Q ss_pred --cHHHHHHHHHHH-----hccC-------CCc----------------------chhhHHHHHHHHHccCCHHHHHHHH
Q 018882 113 --MFAEMELTLVKM-----LSED-------CEP----------------------DVWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 113 --~~~~a~~~~~~~-----~~~~-------~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
++..+.-.+... ...+ ..| -..-...+.++..+..++..+.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 001111110000 0000 011 0111334455556666777777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH-------HHHHHhcCChHHHHHHHHHH
Q 018882 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV-------IDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~ 229 (349)
....+.. -+..-++....+|...|....+...-....+.|.. ...-|+.+ ..++.+.++++.+...|.+.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 7776654 35555666667777777777766666555554432 22223333 33455566777788777776
Q ss_pred HhCCCCCcHHHH-------------------------HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018882 230 RSERIKPSCVTL-------------------------CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 230 ~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
......|+...= ..-...+.+.|++..|...+.++++..+ -|...|....-+|.
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAACYL 403 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHH
Confidence 554333332211 1113345677888888888888887763 47888888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 285 RLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+.|.+..|++=.+..++.+ ++....|..=..++....+++.|.+.++...+.+++
T Consensus 404 kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 8888888887777666652 223444555555566666777777777776666543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-07 Score=81.99 Aligned_cols=205 Identities=11% Similarity=0.039 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT 103 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 103 (349)
...|-.-|..+.+.++++.|.+++++....-+.... ...|.++++.-..-|.-+...++|+++.+.- -.-..|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 444555555555555555555555555443211111 1223333333333344444555555554431 11233444
Q ss_pred HHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcC
Q 018882 104 LIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNILLDSYGKAG 182 (349)
Q Consensus 104 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 182 (349)
|...|.+.+.+++|.++++.|.+.- ......|...+..+.+.++-+.|..++.+..+.-.+ -......-.+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 5555555555555555555555432 133344455555555555555555555554443100 01222333333334455
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 018882 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK 235 (349)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 235 (349)
+.+.+..+|+......++ -...|+..++.-.++|+.+.+..+|++....++.
T Consensus 1615 DaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred CchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 555555555554443322 3445555555555555555555555555544433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-07 Score=77.85 Aligned_cols=254 Identities=10% Similarity=0.005 Sum_probs=188.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018882 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
.-+.+.|++.+|.-.|+...+.. +-+...|..|.......++-..|+..+++..+.. +-+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34568899999999999998874 4478899999999999999999999999998765 455677788888899999999
Q ss_pred HHHHHHHHHHhcCC------C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCCCchhhHHHHHHHHHhcCChHH
Q 018882 151 TMEKCYEKFQSAGI------Q--PSINTFNILLDSYGKAGHFEKMSAVMEYM-QKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 151 ~a~~~~~~~~~~~~------~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
.|.+.++..+.... . ++...-.. ..+.....+....++|-++ ...+..+|+.....|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999988754321 0 01110000 1222222334445555444 445545788888999999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
|.+.|+.++... +-|..+|+.|...++...+.++|+..|.++.+..+. =+++...|.-.|+..|.+++|.+.|-..+.
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999998765 567789999999999999999999999999986533 244555688889999999999988766543
Q ss_pred c---------CCCCCHHHHHHHHHHHHhcCchhhhHHH
Q 018882 302 R---------GCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 302 ~---------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
. +..++...|..|=.++.-.++.|.+.++
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 2 1223457788777778888877755554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.4e-06 Score=69.01 Aligned_cols=152 Identities=13% Similarity=0.123 Sum_probs=80.7
Q ss_pred CCCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 4 KCKQPEKAHELFQAMVDE-GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
++|++......|++.+.. -+......|...+......+-++.++.++++..+. .| ..-+--+..+++.+++++|
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---~P--~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---AP--EAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---CH--HHHHHHHHHHHhccchHHH
Confidence 445555555555554433 22223445555555555555555666666655543 12 2244445555566666666
Q ss_pred HHHHHHHHhcC------CCCchHHHHHHHHHHhccCcHH---HHHHHHHHHhccCCCcc--hhhHHHHHHHHHccCCHHH
Q 018882 83 QALLSDMSTQG------IRPNTVTYNTLIDAYGRAKMFA---EMELTLVKMLSEDCEPD--VWTMNCTLRAFGNSGQIDT 151 (349)
Q Consensus 83 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 151 (349)
.+.+....... .+.+-..|..+-+...+.-+.- ....+++.+... -+| ...|+.|..-|.+.|.+++
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHH
Confidence 66555554321 1223344444444444332211 122233333322 233 3568888999999999999
Q ss_pred HHHHHHHHHhc
Q 018882 152 MEKCYEKFQSA 162 (349)
Q Consensus 152 a~~~~~~~~~~ 162 (349)
|..+|++....
T Consensus 267 arDvyeeai~~ 277 (835)
T KOG2047|consen 267 ARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHh
Confidence 99999887754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-06 Score=80.01 Aligned_cols=249 Identities=10% Similarity=0.064 Sum_probs=190.6
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc-CCC---cchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 86 LSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE-DCE---PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|+++.... +-+...|-..|......++.+.|.++.++.... ++. --...|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444432 335667888898999999999999999998753 111 1224577777777777888889999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CcHHH
Q 018882 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK-PSCVT 240 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 240 (349)
.- -....|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+.++-++|..++.+..+.-.+ -....
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 62 2456788999999999999999999999986532 47889999999999999999999999988764211 12344
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHH
Q 018882 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK--VTYRTMVRAY 318 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~ 318 (349)
....+..-.+.|+.+.+..+|+......++ -...|+.+|..-.++|+.+.++.+|++....++.|-. ..|...+..-
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 455556667889999999999998876543 6789999999999999999999999999999887753 4566666666
Q ss_pred HhcCchhhhHHHHHHHHHHhh
Q 018882 319 STNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~ 339 (349)
...|+-+.++.+-.+..+.-+
T Consensus 1682 k~~Gde~~vE~VKarA~EYv~ 1702 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYVKARAKEYVE 1702 (1710)
T ss_pred HhcCchhhHHHHHHHHHHHHH
Confidence 667877766666555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-06 Score=69.11 Aligned_cols=215 Identities=7% Similarity=-0.009 Sum_probs=153.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDKVQALLSDMSTQGIRPNTVTYNTLIDA 107 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (349)
++..+-..+...++.++|+.+..++.... +-+..+|+....++...+ ++++++..++++.+... .+..+|+.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHH
Confidence 44555566677789999999999998863 445567777767777777 67899999999988743 365667755555
Q ss_pred HhccCc--HHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---C
Q 018882 108 YGRAKM--FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA---G 182 (349)
Q Consensus 108 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 182 (349)
+.+.|. .++++.+++++.+.. +-+..+|+....++...|+++++++.++++++.+.. +...|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence 555555 367788888888765 567788888888888999999999999999988644 666776666555544 2
Q ss_pred CH----HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 183 HF----EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA----GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 183 ~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
.. ++......++....+. +...|+.+...+... +...+|...+.+....+ +.+...+..|+..|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 4566666677666544 788888888887763 34456777777766544 4456677777777764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.1e-06 Score=64.83 Aligned_cols=305 Identities=11% Similarity=0.019 Sum_probs=214.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHH-HH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN-TL 104 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l 104 (349)
++.-.--+...+...|++.+|+.-|....+.. +.+-.++-.-...|...|+...|+.-+.+.++. +||-..-. .-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 44555667788888999999999998887642 233344445556788888888888888888775 66643222 22
Q ss_pred HHHHhccCcHHHHHHHHHHHhccCCCc------------ch--hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSEDCEP------------DV--WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINT 170 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (349)
...+.+.|.+++|..-|+.+++..... .. ......+..+...|+...|+.....+++.. +-|...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 345778899999999999988764211 11 112233455677889999999999988863 558888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH----HHHHH--
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV----TLCSL-- 244 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l-- 244 (349)
+..-..+|...|++..|+.-++...+..-. +..++--+-..+...|+.+.++...++..+. .|+.. .|..+
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 888899999999999999888888776543 5666666777788889999988888887764 34432 22211
Q ss_pred -------HHHHHhcCChhhHHHHHHHHhhCCCCchHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHH
Q 018882 245 -------VRAYGHAGKPEKLGSVLRFIDNSDIMLDTV---FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-KVTYRT 313 (349)
Q Consensus 245 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ 313 (349)
+......+++.++....+...+..+..... .+..+-.++...|++.+|++...+..+. .|| ..++.-
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~d 346 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHH
Confidence 122344566777777777766654432222 3445666777888999999998888875 444 777777
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 314 MVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
-..+|.-..+++.|+.-++...+.+++
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 788888888899998888887776654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-06 Score=74.37 Aligned_cols=285 Identities=11% Similarity=0.052 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 018882 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSD 88 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 88 (349)
.++++.+++..+.+ +.|+.+...+.--|+..++++.|.+..++.....+ ..+...|..+.-.+...+++..|+.+.+.
T Consensus 461 ~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNR-GDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 46788888888775 34444544555567788899999999999888733 57788899998889999999999999888
Q ss_pred HHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc---------------------C-------CCcchhhHHHHH
Q 018882 89 MSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE---------------------D-------CEPDVWTMNCTL 140 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~ 140 (349)
.... ...|-.....-+..-..-++.++++.....+..- | ..-...++..+.
T Consensus 539 al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 539 ALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 7654 1112111111122222244545544443332210 0 000112222222
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 018882 141 RAFGNSGQIDTMEKCYEKFQSAGIQP--S------INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
......+..-....- +....+.| + ...|......+.+.+..++|...+.+..... +.....|......
T Consensus 618 ~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 618 SLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL 693 (799)
T ss_pred HHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH
Confidence 221110000000000 11111111 2 2234556677788899999998888887664 3367777777788
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH--HHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS--VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
+...|.+++|.+.|......+ +-++.+.+++...+.+.|+...|.. ++..+.+.+. .+...|..+...+.+.|+.+
T Consensus 694 ~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchH
Confidence 889999999999999887764 4456788999999999999888888 9999998875 58999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 018882 291 EMKGVLEVMQQR 302 (349)
Q Consensus 291 ~a~~~~~~m~~~ 302 (349)
.|.+.|....+.
T Consensus 772 ~Aaecf~aa~qL 783 (799)
T KOG4162|consen 772 QAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHhh
Confidence 999999987765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-06 Score=66.04 Aligned_cols=292 Identities=10% Similarity=0.122 Sum_probs=170.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 018882 7 QPEKAHELFQAMVDEGCDANTQSFTALL-SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQAL 85 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 85 (349)
.+++|++++.+.... .|+-...|.-+ -+|.+..-++-+.+++.-..+.. +.++.+.|.......+.=+-..|++-
T Consensus 166 HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhccchhHHH
Confidence 367888888888775 35555555444 34667777777777777766652 33344455444333332111122221
Q ss_pred HHH--------------HHhcCC------------CC-----chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchh
Q 018882 86 LSD--------------MSTQGI------------RP-----NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW 134 (349)
Q Consensus 86 ~~~--------------~~~~~~------------~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 134 (349)
... +.++++ -| =+..--.|+-.|.+.++..+|..+.+++.. ..|-..
T Consensus 242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Ey 319 (557)
T KOG3785|consen 242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEY 319 (557)
T ss_pred HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHH
Confidence 222 111110 01 112233455567888889998888877642 123222
Q ss_pred hHHHHHHH-----HHccCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 018882 135 TMNCTLRA-----FGNSGQIDTMEKCYEKFQSAGIQPSI-NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI 208 (349)
Q Consensus 135 ~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (349)
....+..+ .......+-|.+.|+..-+++..-|+ .--..+...+.-..++++++..+..+...-...|...+ .
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N 398 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-N 398 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-H
Confidence 22222211 11222345577777666555443322 12344555666667788888888888776444344433 5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH-HHHHHHHhcCChhhHHHHHHHHhhCCCCchHH-HHHHHHHHHHhc
Q 018882 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC-SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV-FFNCLVDAYGRL 286 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~ 286 (349)
+.++.+..|++.+|+++|-.+....++ |..+|. .+.++|.+.+.++.|+.++-.+...+ +.. ....+...|.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHH
Confidence 778889999999999999877554433 445555 45688889999999988776554322 333 344456678889
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHH
Q 018882 287 KCFAEMKGVLEVMQQRGCKPDKVTY 311 (349)
Q Consensus 287 g~~~~a~~~~~~m~~~~~~p~~~~~ 311 (349)
+++--|.+.|+.+...+ |++.-|
T Consensus 475 ~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHHhhhHHHccC--CCcccc
Confidence 99988999999888764 444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-07 Score=78.56 Aligned_cols=220 Identities=10% Similarity=-0.012 Sum_probs=160.2
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHH
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL 104 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (349)
|--..-..+...+...|-...|+.+|+++. .|..++.+|...|+..+|..+..+..+. +|++..|..+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 333334456677888888899999988654 4556777888888888998888887773 7788888888
Q ss_pred HHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (349)
.+......-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88877777788888877765432 11112222234678888888887766653 44666777777777788888
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018882 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
+.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|.+.+-...+.|.++.|.+.+..+
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8888888877765433 56788888888888888888888888887766 555667777777788888888888888776
Q ss_pred hh
Q 018882 265 DN 266 (349)
Q Consensus 265 ~~ 266 (349)
..
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 43
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-05 Score=65.29 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
.-+|..++....+...+..|..+|.++.+.+..+ ...+.++++..+| .++.+-|.++|+.-.+.- .-++..-...+.
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHH
Confidence 4567777888888888999999999999887666 6677788888665 578889999998855432 234555667888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 282 AYGRLKCFAEMKGVLEVMQQRGCKPD--KVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
.+...|+-..+..+|++....++.|+ ...|..++.-=..-|+.+.+.++-++...
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88999999999999999998866665 47899999988999999888877665433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.2e-09 Score=54.17 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=19.2
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 299 (349)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666666555
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.8e-07 Score=69.08 Aligned_cols=186 Identities=10% Similarity=0.020 Sum_probs=116.7
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchH---HH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV---TY 101 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 101 (349)
....+..+...+...|+++.|...|+++.......|. ..++..+..++...|++++|...++++.+.... +.. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHH
Confidence 3556667777778888888888888887765311111 135666777788888888888888888765321 111 34
Q ss_pred HHHHHHHhcc--------CcHHHHHHHHHHHhccCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018882 102 NTLIDAYGRA--------KMFAEMELTLVKMLSEDCEPDV-WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFN 172 (349)
Q Consensus 102 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (349)
..+..++... |+.++|.+.++++.... |+. ..+..+..... ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 4444455443 66777777777776552 322 12211111100 000 00 00112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 173 ILLDSYGKAGHFEKMSAVMEYMQKYHY--SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
.+...+.+.|++++|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678899999999999998876642 224578888999999999999999988887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.4e-05 Score=65.05 Aligned_cols=287 Identities=13% Similarity=0.064 Sum_probs=155.4
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------------------
Q 018882 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIR------------------ 95 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 95 (349)
..++.+.+..++|+..++-.. +.+..+...-...+.+.+++++|.++|+.+.+.+.+
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred HHHHHHcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 345557778888888777222 233445556667777888888888888877554321
Q ss_pred ---------CchHHHHHHH---HHHhccCcHHHHHHHHHHHhcc--------C-----CCcchh-hHHHHHHHHHccCCH
Q 018882 96 ---------PNTVTYNTLI---DAYGRAKMFAEMELTLVKMLSE--------D-----CEPDVW-TMNCTLRAFGNSGQI 149 (349)
Q Consensus 96 ---------~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~--------~-----~~~~~~-~~~~l~~~~~~~~~~ 149 (349)
....+|..+. ..++..|++.+|+++++...+. . +..... .-..+.-++-..|+.
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0122343333 3455678888888888877221 1 011111 112244456678888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHH----HHH-----------------------------------------------HHHH
Q 018882 150 DTMEKCYEKFQSAGIQPSINTF----NIL-----------------------------------------------LDSY 178 (349)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~----~~l-----------------------------------------------~~~~ 178 (349)
.+|..++...++... +|.... |.+ +..|
T Consensus 241 ~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888776642 222111 111 1111
Q ss_pred Hh--------------------------------cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 018882 179 GK--------------------------------AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF 226 (349)
Q Consensus 179 ~~--------------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 226 (349)
.. ......+..++...-+....-.....-..++.....|+++.|.+++
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 00 0011222222222222221112334445556666777888887777
Q ss_pred H--------HHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC------CCCchHHHHHHHHHHHHhcCCHHHH
Q 018882 227 R--------LMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS------DIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 227 ~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
. .+.+.+..| .+...+...+.+.++-+.|..++...... +-.--..++..+...-.+.|+-++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 7 443333333 55556666666777766666666655421 0001112333344444567888888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHH
Q 018882 293 KGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 293 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
..+++++.+.+ ++|..+...++.+|++. +++.|..+
T Consensus 478 ~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 478 SSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 88888888753 45777888888888765 34555544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-06 Score=64.71 Aligned_cols=120 Identities=8% Similarity=-0.002 Sum_probs=76.7
Q ss_pred cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 018882 111 AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY-GKAGH--FEKM 187 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 187 (349)
.++.+++...+++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655554 5556667777777777777777777777766654 33556666666543 45555 3677
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 188 SAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
..++++..+.+.. +...+..+...+...|++++|...|+.+.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777777666544 56666666667777777777777777766554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-05 Score=74.24 Aligned_cols=299 Identities=12% Similarity=0.029 Sum_probs=193.0
Q ss_pred CCCChHHHHHHHHHHHHcCC------CCC--hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGC------DAN--TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIK 71 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~ 71 (349)
..|++++|...+....+.-- .+. ......+...+...|++++|...++....... ..+. ...+.+..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGE 499 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHH
Confidence 46889999998887754310 111 11222334456689999999999998765311 1221 34455666
Q ss_pred HHHhcCChhHHHHHHHHHHhc----CCC-CchHHHHHHHHHHhccCcHHHHHHHHHHHhcc----CCC--c-chhhHHHH
Q 018882 72 SCLKAFAFDKVQALLSDMSTQ----GIR-PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DCE--P-DVWTMNCT 139 (349)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l 139 (349)
.+...|++++|...+.+.... |.. ....++..+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 778899999999998887653 111 11234555667788899999999998876543 211 1 22334455
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chhhH-----HHH
Q 018882 140 LRAFGNSGQIDTMEKCYEKFQSAG--IQP--SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-TIVTY-----NIV 209 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l 209 (349)
...+...|++++|...+.+..... ..+ ....+..+...+...|+.+.|...+.......... ....+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 566777899999999988875531 112 23345556677888999999999998875431110 11111 112
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCc-hHHHHHHHHH
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIML-DTVFFNCLVD 281 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~ 281 (349)
+..+...|+.+.|...+........... ...+..+..++...|++++|...++..... +..+ ...+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 2444568899999998877543221111 111345677888999999999999887542 3222 2345667788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 018882 282 AYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~~ 303 (349)
++.+.|+.++|...+.+..+..
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999999988763
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-06 Score=64.51 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=50.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
.+....+.|++..|...+.+..... ++|...|+.+.-+|.+.|+++.|..-|.+..+.... ++..++.+...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCC
Confidence 4444444444444444444444332 334444444444444444444444444444433222 33344444444444444
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018882 219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV 260 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (349)
.+.|..++......+ .-+..+-..+..+....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 444444444443332 22333334444444444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.85 E-value=5e-09 Score=53.48 Aligned_cols=32 Identities=34% Similarity=0.685 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
|+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-06 Score=64.53 Aligned_cols=160 Identities=14% Similarity=0.036 Sum_probs=121.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
..+-..+...|+-+....+....... .+.|.......+....+.|++..|...+.+..... ++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55667777778877777777664433 23466666678888888899999998888887765 45888888888888899
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
|+.+.|..-|.+..+.. .-++..++.+...+.-.|+.+.|..++......+. -|..+-..+..+....|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999988888887653 33456678888888888889888888888876653 36677777888888888888888776
Q ss_pred HHHH
Q 018882 297 EVMQ 300 (349)
Q Consensus 297 ~~m~ 300 (349)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-05 Score=61.64 Aligned_cols=288 Identities=10% Similarity=0.001 Sum_probs=203.0
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHH---HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHH-HHHHHHHHhcCCh
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTAL---LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY-SILIKSCLKAFAF 79 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~ 79 (349)
..|++..|+.-|....+. |+..|.++ ...|...|+-..|+.=+....+. +||-..- ..-...+.+.|.+
T Consensus 50 a~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHhchhhhhcccH
Confidence 467788888888887764 34444444 45688889988999988888876 6775432 2344567899999
Q ss_pred hHHHHHHHHHHhcCCCC--c----------hHHH--HHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHc
Q 018882 80 DKVQALLSDMSTQGIRP--N----------TVTY--NTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN 145 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~--~----------~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (349)
+.|..-|+..++....- + ...+ ...+..+.-.|+...|+.....+++.. +-|...+..-..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHh
Confidence 99999999998873210 1 1111 223445567789999999999888764 5678888888999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh----hHHHH---------HHH
Q 018882 146 SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIV----TYNIV---------IDA 212 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l---------~~~ 212 (349)
.|++..|+.=+....+.. ..++..+.-+-..+...|+.+.++...++..+.+ ||.. .|..+ +..
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887777664 3366666677788889999999999888888764 4321 12111 122
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF 289 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 289 (349)
....++|.++.+-.+...+...... ...+..+-.++...+++.+|++...++..... .|..++-.-..+|.-...+
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhhhHHH
Confidence 3455677777777776665432212 23344556677778889999999998887542 3577888888888888888
Q ss_pred HHHHHHHHHHHhcC
Q 018882 290 AEMKGVLEVMQQRG 303 (349)
Q Consensus 290 ~~a~~~~~~m~~~~ 303 (349)
+.|+.-|+...+.+
T Consensus 358 D~AI~dye~A~e~n 371 (504)
T KOG0624|consen 358 DDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888777653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.4e-07 Score=68.28 Aligned_cols=132 Identities=13% Similarity=0.096 Sum_probs=101.0
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH-hccCc--HHH
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY-GRAKM--FAE 116 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~ 116 (349)
.++.+++...++...+.. +.|...|..+...+...|+++.|...+++..+.. +-+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 666778887887777654 6788889999999999999999999999888874 33677777777764 56666 488
Q ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018882 117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177 (349)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (349)
|.+++++..+.+ +.+...+..+...+...|++++|...|+++.+.. +|+..-+. +|..
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH-HHHH
Confidence 999999988775 4466778888888889999999999999988874 44544443 3343
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-06 Score=66.95 Aligned_cols=186 Identities=13% Similarity=0.049 Sum_probs=121.2
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch--hh
Q 018882 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS---INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTI--VT 205 (349)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 205 (349)
.....+......+...|+++.|...++++.+.. +.+ ..++..+..++...|++++|...++++.+..+.... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345566777778888899999999998887753 212 245677778888889999999999888776532111 13
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHH
Q 018882 206 YNIVIDAFGRA--------GDLKQMEYLFRLMRSERIKPSC-VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFF 276 (349)
Q Consensus 206 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (349)
+..+..++... |+++.|...++.+.... |+. ..+..+..... .. ... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~------~~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LR------NRL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HH------HHH--------HHHH
Confidence 44445555443 66778888888876543 332 22221111100 00 000 0111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC-CHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 277 NCLVDAYGRLKCFAEMKGVLEVMQQRGC-KP-DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
..+...|.+.|++.+|...++...+... .| ....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2456678889999999999999887632 12 3567888999999999999999987776553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-05 Score=72.79 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=87.3
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL 104 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (349)
+...+..|+..+...+++++|.++.+..... .|+. ..|-.+...+.+.++.+.+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 4667777888887888888888888766665 3333 2333333345555554444333 22
Q ss_pred HHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (349)
+.......++..+..++..+... .-+...+..+..+|-+.|+.+++..+|+++.+.. +-|+.+.|.+...|+.. ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 22333333333333333333332 2233356667777777777777777777777765 44677777777777777 77
Q ss_pred HHHHHHHHHHHhc
Q 018882 185 EKMSAVMEYMQKY 197 (349)
Q Consensus 185 ~~a~~~~~~~~~~ 197 (349)
++|..++.+....
T Consensus 166 ~KA~~m~~KAV~~ 178 (906)
T PRK14720 166 EKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-05 Score=69.97 Aligned_cols=146 Identities=11% Similarity=-0.005 Sum_probs=101.9
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 018882 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV 209 (349)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 209 (349)
..++..+..|..+..+.|.+++|..+++...+.. +-+......+...+.+.+++++|....++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 4456677777777778888888888888777753 334556667777777888888888888777776544 56666777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHH
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCL 279 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (349)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+..- +-...|+.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHH
Confidence 777777888888888888777633 34467777777777778888888888877765432 333444443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.1e-05 Score=63.78 Aligned_cols=297 Identities=14% Similarity=0.022 Sum_probs=195.5
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-hHHHHHHHHHHhccCc
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKM 113 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 113 (349)
.+.+..|+++.|+..|.+..... ++|...|+.-..+++..|++++|.+--.+-.+. .|+ ...|.....++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 45678899999999999998875 678999999999999999999998766666654 555 4578888888889999
Q ss_pred HHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc---C-------------------------------------------
Q 018882 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS---G------------------------------------------- 147 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~------------------------------------------- 147 (349)
+++|+..|.+-++.. +.+...++-+..++... +
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999998877653 33333444444333110 0
Q ss_pred --CHHHHHHHHHHHHh--------cC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHH
Q 018882 148 --QIDTMEKCYEKFQS--------AG-------IQP------------S----------INTFNILLDSYGKAGHFEKMS 188 (349)
Q Consensus 148 --~~~~a~~~~~~~~~--------~~-------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~ 188 (349)
+.+...+....+.. .+ ..| | ..-...+.++..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00001111101000 00 011 0 011244556666667777777
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH-------HHHHHHhcCChhhHHHHH
Q 018882 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS-------LVRAYGHAGKPEKLGSVL 261 (349)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~ 261 (349)
+-+....+.. -+..-++....+|...|.+..+...-....+.|- -...-|+. +..++.+.++++.+...+
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 7777776665 3566677777788888887777766666555442 12222222 334566677788888888
Q ss_pred HHHhhCCCCchHH-------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 262 RFIDNSDIMLDTV-------------------------FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 262 ~~~~~~~~~~~~~-------------------------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 316 (349)
.........|+.. -...-...+.+.|++..|.+.|.+++... +-|...|..-.-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 7765433333211 01122556778899999999999999986 347889999999
Q ss_pred HHHhcCchhhhHHHHHHHHHHhhh
Q 018882 317 AYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+|.+.|.+..|.+-.+...+++++
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCch
Confidence 999999999998877766666543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.6e-05 Score=58.42 Aligned_cols=250 Identities=12% Similarity=0.092 Sum_probs=154.9
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
+-+.-.|.+..++..-...... +.+...-.-+-++|...|.+.....- ... |-.|....+..+......-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchh
Confidence 3455567788777776665544 23334444456677777776544332 222 2234444444444444444444
Q ss_pred HHHH-HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 115 AEME-LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEY 193 (349)
Q Consensus 115 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 193 (349)
++.+ ++.+.+.......+......-...|+..|++++|++..+... +......=+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 334444444333443344444566888899999988876622 233333334556677788889999988
Q ss_pred HHhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018882 194 MQKYHYSWTIVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 269 (349)
|.+.. +..+.+.|..++.+ .+.+..|.-+|++|-+. .+|++.+.+....++...|++++|..+++.......
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 88754 66777777777653 34678888899888643 578888888888888899999999999988887665
Q ss_pred CchHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 018882 270 MLDTVFFNCLVDAYGRLKCF-AEMKGVLEVMQQR 302 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 302 (349)
. ++.+...+|..-...|.. +...+.+.++...
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 4 555555555555555554 3345566666654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-05 Score=59.08 Aligned_cols=251 Identities=10% Similarity=0.067 Sum_probs=163.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018882 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
+-+.-.|++..++..-....... -+...-.-+.++|...|.+..... +..... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 34455677877776655544331 233344445677777777654332 222222 344444444444444455544
Q ss_pred HHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 151 TME-KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 151 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
+-. ++.+.+.......+......-...|++.|++++|.+...... +......=+..+.+..+.+-|...++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 344444444334344444445567899999999999887622 3334444455667888999999999999
Q ss_pred HhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018882 230 RSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305 (349)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 305 (349)
.+. .+..+.+.|..++.+ .+.+..|.-+|+++.+. ..|++.+.+-...++...|++++|..++++.......
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 863 356777777777664 35688899999999875 4589999999999999999999999999999988654
Q ss_pred CCHHHHHHHHHHHHhcCchhh-hHHHHHHHHHHh
Q 018882 306 PDKVTYRTMVRAYSTNGMKNH-AKEFQDLVEKMD 338 (349)
Q Consensus 306 p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 338 (349)
++.+...++.+-...|...+ ..+.+..+....
T Consensus 240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred -CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 67887777777666776543 344555544433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-06 Score=61.94 Aligned_cols=109 Identities=6% Similarity=-0.052 Sum_probs=80.2
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018882 12 HELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 91 (349)
..+|++..+. .|+ .+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+....
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456666554 233 35556777778888888888888877664 56777778888888888888888888888887
Q ss_pred cCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc
Q 018882 92 QGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.. +.+...+..+..++...|++++|...|+.....
T Consensus 87 l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 87 LD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 64 346777777888888888888888888887765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.4e-05 Score=67.54 Aligned_cols=289 Identities=12% Similarity=0.134 Sum_probs=158.7
Q ss_pred HHHHHHHHcCCC--CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 018882 13 ELFQAMVDEGCD--ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-QPDVNTYSILIKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 13 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 89 (349)
+++++..+.+++ .|+......+.++...+-+.+-+++++++.-.+.. ..+...-|.++-...+. +..++.+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 455666655443 35666777888888899999999999988765332 22233344444444443 444555555555
Q ss_pred HhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccC---------------------CCcchhhHHHHHHHHHccCC
Q 018882 90 STQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED---------------------CEPDVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~ 148 (349)
-.-. .|+ +...+...+-+++|..+|++..-.+ .-.....|..+..+-.+.|.
T Consensus 1047 dnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1047 DNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred ccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence 4432 111 1222333333444444443321100 01123456777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 018882 149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
..+|.+-|-+. .|+..|..+++...+.|.+++-.+.+...++..-.|... +.|+-+|++.++..+.++++.
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-
Confidence 77776555331 266677788888888888888877777666655444443 467777777777666555442
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH-----------
Q 018882 229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE----------- 297 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~----------- 297 (349)
-|+......+..-|...+.++.|.-++..+. -|..|...+...|++..|...-+
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 3555555566666666666666655554322 23344444444444444433222
Q ss_pred -------------HHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHH
Q 018882 298 -------------VMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 298 -------------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
+|...++.....-..-++.-|...|-+++...+++.
T Consensus 1256 cfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 222223333444555666666666666655555543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.2e-05 Score=67.61 Aligned_cols=157 Identities=14% Similarity=0.204 Sum_probs=93.9
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHH
Q 018882 41 GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120 (349)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 120 (349)
+.+++|.+.-++.. ....|+.+..+-.+.+.+.+|.+-|-+ . -|+..|..++....+.|.+++..+.
T Consensus 1089 ~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyik---a---dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYIK---A---DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred hhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHHh---c---CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 44555555544432 235667777777777777777655532 2 1566777777777777777777777
Q ss_pred HHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018882 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS 200 (349)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 200 (349)
+.-..+....|.+. +.++-+|++.++..+.++++ ..|+......+.+-|...+.++.|.-+|.
T Consensus 1156 L~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-------- 1218 (1666)
T KOG0985|consen 1156 LLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-------- 1218 (1666)
T ss_pred HHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH--------
Confidence 76666655455544 45667777777766654443 23455555556666666666666655554
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHH
Q 018882 201 WTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
++..|..|...+...|++..|.+.-++
T Consensus 1219 -~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1219 -NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred -HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 233455555566666666666554443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.8e-05 Score=66.33 Aligned_cols=302 Identities=11% Similarity=0.067 Sum_probs=171.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC--------CCCHHHHHHHHHHH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC--------QPDVNTYSILIKSC 73 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~ll~~~ 73 (349)
|...|+.+.|.+-++.+.. ..+|..+.+.|.+.++++-|.--+-.|....|. .|+ ..=.-..-..
T Consensus 738 yvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 4556888888887777654 468999999999999888877666666443211 121 1111222234
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHH
Q 018882 74 LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
...|.+++|+.+|.+-++. ..|=..|-..|+|++|.++-+.--+..+ ..||.....-+...++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 5678888888888876653 3444566677888888887665432222 234445555555667777777
Q ss_pred HHHHHHH----------hcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------
Q 018882 154 KCYEKFQ----------SAG---------IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY--------------- 199 (349)
Q Consensus 154 ~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------- 199 (349)
+.|++.. ... -..|...|......+-..|+.+.|+.+|......-.
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa 958 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAA 958 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHH
Confidence 6665432 110 122445556666666677888888877776543210
Q ss_pred -----CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh---------------hHHH
Q 018882 200 -----SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE---------------KLGS 259 (349)
Q Consensus 200 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------------~a~~ 259 (349)
.-|....-.+.+.|-..|++.+|..+|.+.. +|.+.|+.|-..+--+ .|.+
T Consensus 959 ~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aAr 1029 (1416)
T KOG3617|consen 959 RIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAAR 1029 (1416)
T ss_pred HHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHH
Confidence 1133333445555555555556655555442 2223333222221111 1111
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcC--CCCCHHHHHHHHHHHHhcCchhhhHH
Q 018882 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE--------VMQQRG--CKPDKVTYRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~ 329 (349)
.|++ .|. -+...+..|-+.|.+.+|+++-- +++..+ ...|+...+.-..-+....++++|..
T Consensus 1030 YyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~ 1101 (1416)
T KOG3617|consen 1030 YYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVN 1101 (1416)
T ss_pred HHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHH
Confidence 1111 110 11223445667777777766521 122222 33467777777788888899999999
Q ss_pred HHHHHHHHhh
Q 018882 330 FQDLVEKMDE 339 (349)
Q Consensus 330 ~~~~~~~~~~ 339 (349)
++-..++++.
T Consensus 1102 lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1102 LLCLAREFSG 1111 (1416)
T ss_pred HHHHHHHHHH
Confidence 8887777654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.9e-05 Score=57.29 Aligned_cols=188 Identities=9% Similarity=-0.004 Sum_probs=102.7
Q ss_pred CChhHHHHHHHHHHhc---C-CCCchH-HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHH
Q 018882 77 FAFDKVQALLSDMSTQ---G-IRPNTV-TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDT 151 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (349)
.+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++.++- +-+...-..-...+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 3445555555555432 2 333433 23344555556666666666666665542 2222222222222345566677
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
|.++++.+.+.+ +.|..++.--+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777766654 445556655555555666666666666655554 234677777777777777777777777777654
Q ss_pred CCCCCcHHHHHHHHHHHHhcC---ChhhHHHHHHHHhhCC
Q 018882 232 ERIKPSCVTLCSLVRAYGHAG---KPEKLGSVLRFIDNSD 268 (349)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 268 (349)
.. |.++..+..+...+...| +.+.+.+.+....+..
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 32 334444444554444443 3445666666666543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-06 Score=60.17 Aligned_cols=59 Identities=5% Similarity=-0.145 Sum_probs=22.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
.+..+..++...|++++|...|++..+.. +.+...+..+..++...|+.++|...|+..
T Consensus 60 a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 60 AHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333333333322 223333333333333333344333333333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.6e-06 Score=73.72 Aligned_cols=251 Identities=12% Similarity=0.096 Sum_probs=170.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch-HHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHH
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT-VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC 138 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 138 (349)
+.+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+...++..++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 556788899999999999999999999977765 3443 3333344456666665444433 3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
++.......++..+..+...+.+.+ -+...+..+..+|-+.|+.++|..+++++.+..+. ++...|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 3344444555555555556666543 35557888999999999999999999999998844 899999999999999 9
Q ss_pred hHHHHHHHHHHHhCCC---CCc--HHHHHHHHHHHHhcCChhhHHHHHHHHhhC-CCCchHHHHHHHHHHHHhcCCHHHH
Q 018882 219 LKQMEYLFRLMRSERI---KPS--CVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-DIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
.++|..++.+....-+ .++ ...|..++. ....+.+.-..+.+.+... +..--..++-.+-..|-..++++++
T Consensus 165 L~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 9999999988865411 010 111222211 1223344445555555443 3333455667777888899999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 293 KGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 293 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
..+++.+.+.... |.....-++.+|. +.+.. ...++...++..
T Consensus 243 i~iLK~iL~~~~~-n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 243 IYILKKILEHDNK-NNKAREELIRFYK--EKYKD-HSLLEDYLKMSD 285 (906)
T ss_pred HHHHHHHHhcCCc-chhhHHHHHHHHH--HHccC-cchHHHHHHHhc
Confidence 9999999988543 6777788888876 44433 555555555544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-05 Score=70.57 Aligned_cols=148 Identities=8% Similarity=0.007 Sum_probs=121.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018882 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (349)
.+.+...+..|.....+.|.+++|..+++...+..+. +......+...+.+.+++++|....++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4556888899999999999999999999999887644 67778888889999999999999999988765 456677788
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMV 315 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 315 (349)
+..++.+.|++++|..+|+++...+. -+..++..+...+...|+.++|...|+...+.- .|-...|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 88899999999999999999988543 357888899999999999999999999988762 23445555444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.8e-05 Score=56.58 Aligned_cols=190 Identities=12% Similarity=0.085 Sum_probs=139.8
Q ss_pred CCChhHHHHHHHHhhcCCC---CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHH
Q 018882 40 SGLFDKAFSLLEHMKNTPD---CQPDVN-TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA 115 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~---~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (349)
..+.++.++++..+..... ..++.. .|..++-+....++.+.|..+++.+... ++-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4567788888877764321 234443 4667777888899999999999998887 3333333333333455679999
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
+|.++++.+.+.+ +.|..++..-+.+.-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999887 566777776666677778877888888887776 56799999999999999999999999999998
Q ss_pred hcCCCCchhhHHHHHHHHHhcC---ChHHHHHHHHHHHhCC
Q 018882 196 KYHYSWTIVTYNIVIDAFGRAG---DLKQMEYLFRLMRSER 233 (349)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 233 (349)
-..+. ++..+..+...+...| +.+.+..+|.+..+..
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 76532 5555666666554444 5667888888887654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.8e-05 Score=61.04 Aligned_cols=182 Identities=14% Similarity=0.024 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhccC--CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 114 FAEMELTLVKMLSED--CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVM 191 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 191 (349)
..++....+++...+ -.|+...+...+........-..+..++.+..+. .-...-|.. ...+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHHH
Confidence 444444444444332 2344444555555443333333333333222221 112222333 33456778899999999
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018882 192 EYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM 270 (349)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (349)
+.+....+ -|+..+......+...++.++|.+.++.+.... |+ ....-.+..++.+.|++.+|...++.......
T Consensus 330 ~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p- 405 (484)
T COG4783 330 QPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP- 405 (484)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-
Confidence 88877653 366677777788889999999999999888753 44 56667788889999999999998888877654
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
-|+..|..|..+|...|+..++.....++...
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 58889999999999988888887766655443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.4e-06 Score=59.12 Aligned_cols=99 Identities=10% Similarity=0.051 Sum_probs=61.3
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+......+...+...|++++|.+.|+.+.... +.+...+..+...+...|++++|...++...+.+ +.+...+..+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 33445555566666677777777776665542 3455666666666666667777776666665553 33455555566
Q ss_pred HHHhccCcHHHHHHHHHHHhcc
Q 018882 106 DAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.++...|++++|...++...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666666654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00016 Score=59.82 Aligned_cols=119 Identities=11% Similarity=-0.034 Sum_probs=72.1
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHH
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (349)
+...|++++|+..++.+.... +-|..........+.+.++..+|.+.++++....+. .....-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHH
Confidence 345566666666666666552 334555555566666667777777777666665422 244555556666667777777
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018882 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
..+++...... +-|+..|..|.++|...|+..++.....+.
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 66666665443 455666666777777777666665554443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.7e-06 Score=57.85 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
....+...+...|++++|...++.+...+ +.+...+..+...+...|+++.|...++...+.+. .+...+..+...|.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 34444445555555555555555554433 33445555555555555566666655555554432 24445555555566
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 018882 285 RLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~ 302 (349)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5e-05 Score=68.00 Aligned_cols=82 Identities=10% Similarity=-0.074 Sum_probs=49.6
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
.|...+....+..- .+..+|+.|... ...|.+.-|.--|-.-.... +....+|..+...+.+..+++.|...+..++
T Consensus 801 ~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 45555555554432 356667666554 44456655555554443332 2256677777777778888888888887777
Q ss_pred HHhhh
Q 018882 336 KMDET 340 (349)
Q Consensus 336 ~~~~~ 340 (349)
.+++.
T Consensus 878 SLdP~ 882 (1238)
T KOG1127|consen 878 SLDPL 882 (1238)
T ss_pred hcCch
Confidence 76654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.2e-05 Score=67.18 Aligned_cols=240 Identities=14% Similarity=0.099 Sum_probs=165.7
Q ss_pred ChhhHHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-C--------C
Q 018882 26 NTQSFTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-G--------I 94 (349)
Q Consensus 26 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~--------~ 94 (349)
|..+-..++.. |...|+.+.|.+-.+-++. ...|..+.+.|.+.++++-|.-.+-.|... | .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 55566666653 7788999999888776653 468999999999999998888777766432 1 1
Q ss_pred CCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018882 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL 174 (349)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 174 (349)
.|+ .+=....-.....|.+++|..+|++..+. ..+=+.|-..|.+++|.++-+.=.... =..||...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 222 22222333345779999999999998743 345566778899999998775533222 23566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----------cCC---------CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQK----------YHY---------SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK 235 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~----------~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 235 (349)
...+...++.+.|++.|++... ..+ ..|...|.-....+-..|+.+.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 7777778888888888775321 110 12456666667777788888888888877643
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
|.++++..|-.|+.++|.++-++-. |......|.+.|-..|++.+|..+|.+..
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5567777788888888877765432 44455567888888888888888876654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.001 Score=59.31 Aligned_cols=222 Identities=16% Similarity=0.126 Sum_probs=152.2
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
..+++..|++...++.+. .|+.. |...+.+ +.+.|+.++|..+++.....+ .-|..+...+-.+|.+.+..++
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhH
Confidence 467889999999998876 35543 3334444 668999999999998887764 3488899999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC-C---------HHH
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG-Q---------IDT 151 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~ 151 (349)
|..+|++.... .|+......+..+|.+.+++.+-.++--++.+. .+-....+=.+++...... . ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999998876 577778888889999998877655555444443 1233333334444433221 1 223
Q ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 152 MEKCYEKFQSAG-IQPSINTFNILLDSYGKAGHFEKMSAVME-YMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 152 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
|.+.++.+.+.+ ..-+..-.......+...|++++|.+++. ...+.-..-+...-+.-+..+...++|.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 566666666554 21122222233344567889999999994 3334333345555566778888899999999999998
Q ss_pred HhCC
Q 018882 230 RSER 233 (349)
Q Consensus 230 ~~~~ 233 (349)
...+
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8876
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.2e-05 Score=54.71 Aligned_cols=116 Identities=17% Similarity=0.121 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhh
Q 018882 181 AGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS--CVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 256 (349)
.++...+...++.+.+....- .....-.+...+...|++++|...|+........|+ ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555443211 012222233445555666666666655555431121 1123334455555566666
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
|...++...... ..+..+......|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 665554433222 2334445555556666666666555543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.9e-07 Score=46.87 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 307 (349)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999988887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0011 Score=59.03 Aligned_cols=225 Identities=9% Similarity=0.032 Sum_probs=152.8
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS--CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
....+++..|+....++.+. .|+.. |..++.+ +.+.|..++|..+++.....+.. |..|...+-.+|.+.++.
T Consensus 19 ~ld~~qfkkal~~~~kllkk---~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK---HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH---CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 34678899999999998887 45543 3333333 45789999999999988777655 888999999999999999
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------H
Q 018882 115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH----------F 184 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~ 184 (349)
++|..+|++..+. .|+......+..+|.+.+.+.+-.++--++-+. .+-+...+=.++....+.-. .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999999866 577888888889999999887755555555443 23344444344444433211 2
Q ss_pred HHHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCChHHHHHHHHH-HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHH
Q 018882 185 EKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRL-MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLR 262 (349)
Q Consensus 185 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 262 (349)
.-|.+.++.+.+.+ .--+..-...-...+...|++++|.+++.. ..+.-...+...-+.-+..+...+++.+..++..
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 33555566665443 111222222333445678889999999943 3333334444555566777888888888888888
Q ss_pred HHhhCCC
Q 018882 263 FIDNSDI 269 (349)
Q Consensus 263 ~~~~~~~ 269 (349)
++...+.
T Consensus 251 ~Ll~k~~ 257 (932)
T KOG2053|consen 251 RLLEKGN 257 (932)
T ss_pred HHHHhCC
Confidence 8887764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00011 Score=63.86 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=60.9
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHH
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (349)
....++|.+|+.+++.+.... .-..-|..+...|+..|+++.|.++|.+. ..++-.|..|.+.|+|+.|
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 345556666666666655542 22334566666777777777777776532 2234456667777777777
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHH
Q 018882 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLR 262 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 262 (349)
.++-.+.. |.......|..-..-.-..|++.+|.+++-
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 76665542 223334445444455555666666655543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.8e-07 Score=46.21 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018882 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 306 (349)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.41 E-value=9e-06 Score=67.59 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=62.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCL 279 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (349)
+......++..+....+.+.+..++.+.... ....-..|..++++.|...|..+.+..+++.=...|+.||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444555555555555555555555555433 11111233345556666666666666655555555666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 280 VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 320 (349)
+..+.+.|++..|.++..+|...+...+..|+..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666665555555544444554444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.3e-05 Score=54.66 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=95.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch--HHHHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD--TVFFN 277 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 277 (349)
...|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......++ .....
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34455555555 4788999999999988763 222 23444566888999999999999999988763333 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHH
Q 018882 278 CLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
.+...+...|++++|+..++..... ......+......|.+.|++++|...|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6788899999999999999775443 23556677888899999999999999875
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-05 Score=64.52 Aligned_cols=127 Identities=11% Similarity=0.088 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018882 98 TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177 (349)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (349)
......|+..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++++..+.. +.+......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444556667777788888888888887664 44 34456777777777788888888877653 4466666667777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
+.+.++++.|..+.+++.+..+. +..+|..|..+|...|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888888776533 56788888888888888888888887764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.1e-05 Score=64.19 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=102.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
...++..+...++++.|.++++++.+.. |+ ....+++.+...++-.+|.+++.+..+.... +...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 4456677778899999999999999874 44 4455788888889999999999988866533 67777878888999
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 216 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
.++++.|..+.+++.+.. +-+..+|..|..+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999998764 4455699999999999999999999888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0002 Score=62.43 Aligned_cols=137 Identities=17% Similarity=0.255 Sum_probs=93.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
+.+......|.+|+.+++.++.... -..-|..+.+.|...|+++.|.++|-+. ..++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3444566778888888887776543 2455677778888888888888888643 2345567778888888
Q ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHH
Q 018882 255 EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
+.|.++-.+... .......|-.-..-+-++|++.+|.+++-.+. .|+ ..|..|-+.|..+...++.++
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 888877666543 33455566666666778888888887764322 244 346778888888877776553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-06 Score=45.21 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN 97 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 97 (349)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-06 Score=44.65 Aligned_cols=32 Identities=38% Similarity=0.692 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRP 96 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (349)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00045 Score=62.23 Aligned_cols=216 Identities=12% Similarity=0.028 Sum_probs=149.7
Q ss_pred cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 113 MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
+...++..|-+..+.. +.-...|..|...|+..-+...|.+.|+...+.. ..+..........|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3666666666665443 2224578888888888888899999999988875 3477788899999999999999998843
Q ss_pred HHHhcC-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 018882 193 YMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML 271 (349)
Q Consensus 193 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 271 (349)
..-+.. ...-...|....-.|...++...+..-|+...... +.|...|..+.++|...|++..|.++|.++.... |
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 332221 11112233344455678889999999999887665 5678899999999999999999999999887754 3
Q ss_pred hHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCchhhhHHHHHHH
Q 018882 272 DTVFFNC--LVDAYGRLKCFAEMKGVLEVMQQR------GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 272 ~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (349)
+. .|.. .....+..|.+.+|...+...... +..--..++......+...|-..++..+++.-
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 32 2222 233456789999999988877643 11223445555555566666666666666543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.27 E-value=3e-05 Score=64.56 Aligned_cols=124 Identities=16% Similarity=0.115 Sum_probs=100.8
Q ss_pred CCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc--CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018882 93 GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE--DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINT 170 (349)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (349)
+.+.+......+++.+....+.+++..++.+.... ....-..|..++++.|...|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45667778888888888888889999988888765 2233345667999999999999999999998888999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998887766555677777767666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.3e-05 Score=51.16 Aligned_cols=74 Identities=20% Similarity=0.418 Sum_probs=39.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC-CCchHHHHHHHHHHhccC--------cHHHHHHHHHHHhccCCCcchhhHHHHH
Q 018882 70 IKSCLKAFAFDKVQALLSDMSTQGI-RPNTVTYNTLIDAYGRAK--------MFAEMELTLVKMLSEDCEPDVWTMNCTL 140 (349)
Q Consensus 70 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (349)
|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4444445666666666666666666 566666666665554432 1233444444444444455555555444
Q ss_pred HHH
Q 018882 141 RAF 143 (349)
Q Consensus 141 ~~~ 143 (349)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.3e-05 Score=50.48 Aligned_cols=76 Identities=9% Similarity=0.200 Sum_probs=50.4
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCC-CchHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018882 245 VRAYGHAGKPEKLGSVLRFIDNSDI-MLDTVFFNCLVDAYGRLK--------CFAEMKGVLEVMQQRGCKPDKVTYRTMV 315 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 315 (349)
|..|...+++...-.+|+.+++.++ .|+..+|+.++.+..+.. +.-..+.+|++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4444445666666666666666666 566666666666655432 2345677788888888888888888888
Q ss_pred HHHHh
Q 018882 316 RAYST 320 (349)
Q Consensus 316 ~~~~~ 320 (349)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 77654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00017 Score=57.72 Aligned_cols=129 Identities=9% Similarity=0.039 Sum_probs=73.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHH-HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA-FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (349)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. .+.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 55666666666666777777777766432 2233334333333 22245555577777776655 344666666666767
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 179 GKAGHFEKMSAVMEYMQKYHYSWT---IVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
...++.+.|..+|+..... +.++ ...|...+..-.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777666544 2212 24666666666667777777777666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.4e-05 Score=48.52 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 018882 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG 109 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (349)
+..+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 4455556666777777777777666542 3334555566666666677777777776666553 223345566666666
Q ss_pred ccCcHHHHHHHHHHHhc
Q 018882 110 RAKMFAEMELTLVKMLS 126 (349)
Q Consensus 110 ~~~~~~~a~~~~~~~~~ 126 (349)
..|+++.|...+....+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666666553
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00014 Score=50.00 Aligned_cols=99 Identities=7% Similarity=-0.027 Sum_probs=49.7
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CchHHHHHHH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP-DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIR--PNTVTYNTLI 105 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 105 (349)
++..++..+.+.|++++|.+.|+.+....+-.+ ....+..+..++.+.|+++.|...++.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555556666666666666554321001 1234444555555666666666666655543111 1133444455
Q ss_pred HHHhccCcHHHHHHHHHHHhcc
Q 018882 106 DAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.++...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555556666666666555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.9e-06 Score=52.00 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=48.3
Q ss_pred CCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCD-ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+++++. .+.. +.+....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46777777777777765321 1344455567777777777777777766 2221 223333444566777777777777
Q ss_pred HHHHH
Q 018882 84 ALLSD 88 (349)
Q Consensus 84 ~~~~~ 88 (349)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00035 Score=56.01 Aligned_cols=129 Identities=11% Similarity=0.075 Sum_probs=56.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS-YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAF 213 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (349)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|..+|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34445555555555555555555554332 1223333333333 22234444455555555443 223445555555555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 214 GRAGDLKQMEYLFRLMRSERIKPSC---VTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
...++.+.|..+|++.... +.++. ..|...++-=.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555433 11111 2444444444445555555555444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.1e-06 Score=40.98 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGC 304 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 304 (349)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00043 Score=47.53 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=7.7
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 018882 175 LDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~ 194 (349)
..++.+.|+++.|...++.+
T Consensus 46 ~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 46 GEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHhhccHHHHHHHHHHH
Confidence 33333333333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00017 Score=47.03 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 276 FNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m 299 (349)
+..+...+...|+++.|...+...
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333444444444444444333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0002 Score=53.11 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=63.7
Q ss_pred CchhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHH
Q 018882 201 WTIVTYNIVIDAFGRA-----GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVF 275 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (349)
.+-.+|..++..|.+. |..+=....++.|.+-|+..|..+|+.|+..+=+ |.+- | ...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p-~n~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------P-RNF 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------c-ccH
Confidence 3667777777777643 4555556666777777777777777777776654 3221 1 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018882 276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
+..+...|- .+-+-|++++++|...|+-||..++..++..+.+.+
T Consensus 108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111111111 233557888888888888888888888888886655
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00033 Score=49.47 Aligned_cols=98 Identities=9% Similarity=-0.109 Sum_probs=69.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
....-.+...+...|++++|..+|+-+.... +-+..-|..|..++...|++++|+..+.......+ -|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3344445555667788888888887776554 34556666777777778888888888887777664 467777777888
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 018882 283 YGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~ 302 (349)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888776654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0066 Score=51.41 Aligned_cols=159 Identities=6% Similarity=0.036 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
.+|..+++...+..-.+.|..+|.+..+.+..+ ++...++++..+|. ++..-|..+|+--... ..-++.-....+.-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 356777888888888999999999999887666 77888888888775 6789999999875543 12333445567777
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcC
Q 018882 248 YGHAGKPEKLGSVLRFIDNSDIMLD--TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG---CKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g 322 (349)
+...++-..+..+|+.+...+..++ ...|..++..=..-|+...+.++-+++...= ..+....-..+++-|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 8889999999999999988755544 5789999999999999999999988876541 2222233445556665555
Q ss_pred chhhhHH
Q 018882 323 MKNHAKE 329 (349)
Q Consensus 323 ~~~~a~~ 329 (349)
....-..
T Consensus 525 ~~~c~~~ 531 (656)
T KOG1914|consen 525 LYPCSLD 531 (656)
T ss_pred cccccHH
Confidence 4443333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00076 Score=49.83 Aligned_cols=87 Identities=9% Similarity=-0.020 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (349)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455555566666666666666666654432221 2455556666666666666666666655432 223444445555
Q ss_pred HHHhcCChhh
Q 018882 247 AYGHAGKPEK 256 (349)
Q Consensus 247 ~~~~~~~~~~ 256 (349)
.+...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555555433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00017 Score=59.99 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=55.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
..|++++|++.|++..+.. +.+...|..+..++...|++++|+..++++.... +.+...|..+..++...|++++|.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4566777777777766653 3445566666666667777777777777666653 345556666666666777777777
Q ss_pred HHHHHHHhc
Q 018882 84 ALLSDMSTQ 92 (349)
Q Consensus 84 ~~~~~~~~~ 92 (349)
..|++..+.
T Consensus 91 ~~~~~al~l 99 (356)
T PLN03088 91 AALEKGASL 99 (356)
T ss_pred HHHHHHHHh
Confidence 777666654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00036 Score=58.00 Aligned_cols=87 Identities=7% Similarity=-0.146 Sum_probs=40.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
+...|+++.|+..|+++.+.... +...|..+..++...|++++|+..++++.... +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 34445555555555555444322 34444444444555555555555555544432 22334444444445555555555
Q ss_pred HHHHHHHhh
Q 018882 258 GSVLRFIDN 266 (349)
Q Consensus 258 ~~~~~~~~~ 266 (349)
...++...+
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555544444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00041 Score=49.03 Aligned_cols=98 Identities=7% Similarity=-0.002 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018882 168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
......+...+...|++++|..+|+.+....+. +..-|-.|..++-..|++++|++.|....... +-++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 334445556667888888888888888776543 67777778888888888888888888887766 4566777778888
Q ss_pred HHhcCChhhHHHHHHHHhhC
Q 018882 248 YGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~ 267 (349)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888876653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0046 Score=48.38 Aligned_cols=177 Identities=12% Similarity=0.144 Sum_probs=101.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF---NILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
....+...|++++|.+.|+.+...-.. +.... -.+..++.+.+++++|...+++..+..+.-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344455677777887777777765322 22222 34556677778888888888777765433223333333333321
Q ss_pred --c---------------CCh---HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHH
Q 018882 216 --A---------------GDL---KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVF 275 (349)
Q Consensus 216 --~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (349)
. .+. ..|...|+.++ .-|-.+.-..+|...+..+... .- ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~---la-~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR---LA-KY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH---HH-HH
Confidence 1 011 12333333333 3333333344444444433321 01 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 276 FNCLVDAYGRLKCFAEMKGVLEVMQQR--GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
--.+.+-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|......+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 124667788899999999888888876 333456667788889999999999888776553
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=4e-05 Score=48.94 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=8.5
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 018882 174 LLDSYGKAGHFEKMSAVMEY 193 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~ 193 (349)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.001 Score=49.11 Aligned_cols=61 Identities=10% Similarity=-0.055 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc--hHHHHHHHHHHhccCcHHHHHHHHHHHhc
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPN--TVTYNTLIDAYGRAKMFAEMELTLVKMLS 126 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 126 (349)
+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444555555555554443321111 23444444445555555555555554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0015 Score=52.65 Aligned_cols=129 Identities=17% Similarity=0.230 Sum_probs=70.1
Q ss_pred hHHHHHHHHHcc-CCHHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----Cc
Q 018882 135 TMNCTLRAFGNS-GQIDTMEKCYEKFQSA----GIQP--SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-----WT 202 (349)
Q Consensus 135 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~ 202 (349)
.+..+...|... |+++.|.+.|++..+. + .+ -...+..+...+.+.|++++|..+|+++...... .+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 344445566666 7778877777776542 2 11 1334566777788888888888888877654321 12
Q ss_pred hh-hHHHHHHHHHhcCChHHHHHHHHHHHhCC--CC--CcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 203 IV-TYNIVIDAFGRAGDLKQMEYLFRLMRSER--IK--PSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 203 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
.. .+-..+-++...||+..|...+++..... .. ........|+.++ ..|+.+.....+....
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHc
Confidence 21 22223335556788888888888876442 21 1234555666655 4555555444444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.5e-05 Score=39.73 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 206 YNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.5e-05 Score=47.58 Aligned_cols=62 Identities=27% Similarity=0.397 Sum_probs=42.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 69 (349)
+.|++++|++.|+.+.+.. +.+..++..+..++.+.|++++|.++++.+... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 4677788888888777663 446677777777888888888888888777766 4554444433
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0016 Score=50.95 Aligned_cols=121 Identities=14% Similarity=0.053 Sum_probs=92.7
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhC
Q 018882 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNS 267 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 267 (349)
++.-...++. |...|-.|..+|...|+.+.|..-|.+..+.. +++...+..+..++..+.+ ..++..+++++...
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 3333344433 88999999999999999999999999987764 5667777777777665543 55788999999887
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 316 (349)
.. -|+.+...|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 223 D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 223 DP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred CC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 64 478888888999999999999999999999873 34444555554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00026 Score=52.55 Aligned_cols=115 Identities=18% Similarity=0.273 Sum_probs=77.6
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHH
Q 018882 47 FSLLEHMKNTPDCQPDVNTYSILIKSCLKA-----FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121 (349)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 121 (349)
...|+..... ..+-.+|..++..+.+. |..+=....+..|.+-|+..|..+|+.|++.+=+ |.+- -..+|
T Consensus 34 ~~~f~~~~~~---~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~f 108 (228)
T PF06239_consen 34 EELFERAPGQ---AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFF 108 (228)
T ss_pred HHHHHHHhhc---cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHH
Confidence 3444444322 46777788888777653 5666677788888888999999999999988865 3321 11122
Q ss_pred HHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018882 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183 (349)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (349)
+.+-- -.-.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 109 Q~~F~-----------------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFM-----------------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhc-----------------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 22211 1123446688888899988988999999888888877665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0005 Score=50.59 Aligned_cols=62 Identities=6% Similarity=-0.133 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
.+..+...+...|++++|...|+........+ ...++..+...+...|++++|...++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444555555555555555554332111 123445555555555555555555555543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0073 Score=49.38 Aligned_cols=52 Identities=8% Similarity=-0.084 Sum_probs=23.8
Q ss_pred hcCChHHHHHHHHHHHhC---CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 215 RAGDLKQMEYLFRLMRSE---RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
+.|++..|.+.|.+.+.. ++.|+...|.....+..+.|+.++|+.-.+...+
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 444555555555544432 2233334444444444455555555554444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00064 Score=50.06 Aligned_cols=60 Identities=8% Similarity=-0.094 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--chHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRP--NTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
|..+...+...|++++|...+++.......+ ...++..+..++...|++++|...+++..
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444455555555444444331111 11234444444444455555554444444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0076 Score=47.18 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=35.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCchHHH---HHHHHHHhccCcHHHHHHHHHHHhcc
Q 018882 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY---NTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 69 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
....+...|++++|.+.|+.+...-.. +...- -.+..++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344455677777777777777765221 12221 34556667777777777777777665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.006 Score=49.17 Aligned_cols=148 Identities=14% Similarity=0.218 Sum_probs=78.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CC-CCchhhHHHHHHH
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA-GHFEKMSAVMEYMQKY----HY-SWTIVTYNIVIDA 212 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~ 212 (349)
.+..|...|++..|-+++.. +...|... |+++.|.+.|++..+. +. ..-...+..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 34455566666655544443 33344444 6777777777665432 20 1123455666777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC-----CcH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCC--CC--chHHHHHHHHHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIK-----PSC-VTLCSLVRAYGHAGKPEKLGSVLRFIDNSD--IM--LDTVFFNCLVDA 282 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~-----~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~li~~ 282 (349)
+.+.|++++|.++|++....... .+. ..+...+-++...||+..|...++...... +. ........|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 78888888888888877654221 122 123334445666788888888888776442 21 223455566666
Q ss_pred HHhc--CCHHHHHHHHHHHHh
Q 018882 283 YGRL--KCFAEMKGVLEVMQQ 301 (349)
Q Consensus 283 ~~~~--g~~~~a~~~~~~m~~ 301 (349)
+-.. ..+..+..-|+.+.+
T Consensus 245 ~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTSS-
T ss_pred HHhCCHHHHHHHHHHHcccCc
Confidence 6442 335555555554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0026 Score=55.45 Aligned_cols=142 Identities=9% Similarity=-0.052 Sum_probs=93.7
Q ss_pred CCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC--------ChHHHHHHHHHHH
Q 018882 164 IQPSINTFNILLDSYGKAG-----HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG--------DLKQMEYLFRLMR 230 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 230 (349)
.+.+...|..++++..... +...|..+|++..+..+. ....|..+..++.... +...+.+......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4567788888888765432 367888899988887533 3445554444332221 1223333333333
Q ss_pred hC-CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 018882 231 SE-RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309 (349)
Q Consensus 231 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 309 (349)
.. ..+.+...+..+.-.....|++++|...++++...+ |+...|..+...+...|+.++|.+.+++.... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 32 123445667777666667789999999999988876 57788888899999999999999999888776 34444
Q ss_pred H
Q 018882 310 T 310 (349)
Q Consensus 310 ~ 310 (349)
+
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 4
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00054 Score=53.27 Aligned_cols=98 Identities=14% Similarity=0.039 Sum_probs=72.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
+-+.+.+++++|+..|.+..+..+. |.+.|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3456778888888888888877644 77777788888888888888887777766554 334577888888888888888
Q ss_pred hHHHHHHHHhhCCCCchHHHHH
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFN 277 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~ 277 (349)
+|.+.|+...+.. |+-.+|-
T Consensus 167 ~A~~aykKaLeld--P~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALELD--PDNESYK 186 (304)
T ss_pred HHHHHHHhhhccC--CCcHHHH
Confidence 8888888877654 4444443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00022 Score=43.52 Aligned_cols=65 Identities=18% Similarity=0.088 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-chhhhHHHHHHHHHHh
Q 018882 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG-MKNHAKEFQDLVEKMD 338 (349)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 338 (349)
...|..+...+...|++++|+..|++..+.+.. +...|..+..++...| ++++|.+.++...+++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 455666666666666666666666666665322 4555666666666666 5666666666665544
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0029 Score=55.18 Aligned_cols=140 Identities=9% Similarity=-0.032 Sum_probs=98.8
Q ss_pred CCCCchhhHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC--------ChhhHHHHHHHH
Q 018882 198 HYSWTIVTYNIVIDAFGRAG-----DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG--------KPEKLGSVLRFI 264 (349)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~ 264 (349)
..+.+...|...+.+..... +...|..+|++..+.. +-....+..+..++.... +...+.+.....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34567889999988755322 3678999999998764 223344444443332221 122333333433
Q ss_pred hhC-CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 265 DNS-DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 265 ~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
... ....++..|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.++...++++.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 332 123456788888777778899999999999999875 68889999999999999999999999998888765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.027 Score=49.52 Aligned_cols=241 Identities=13% Similarity=0.108 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF 143 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (349)
.+|+.+...++....|++|.+.+..-... ...+.++.+...+++...+...+ +-+....-.+..++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHH
Confidence 34555555555555555555555432211 12444444544554444443333 33444555666677
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhH--------------HHH
Q 018882 144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY--------------NIV 209 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~l 209 (349)
.+.|.-++|.+.+-+. +. | ...+..|...++|.+|.++-+...- |.+.+. .--
T Consensus 863 ~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~ea 929 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEA 929 (1189)
T ss_pred HhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHH
Confidence 7777777766655332 21 1 2344556666677776666543321 111111 112
Q ss_pred HHHHHhcCChHHHHHHHHHHHh----CCCCCcHH----HHHHH-HHHH----------HhcCChhhHHHHHHHHhhC---
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRS----ERIKPSCV----TLCSL-VRAY----------GHAGKPEKLGSVLRFIDNS--- 267 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~----~~~~l-~~~~----------~~~~~~~~a~~~~~~~~~~--- 267 (349)
|..+.+.|+.-.|-+++.+|.+ .+.++-.. .+..+ +.-+ -..|..++|..+++...-.
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ 1009 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQS 1009 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHH
Confidence 3334455555555666655543 23222211 11111 1111 1235555555544332110
Q ss_pred CC----C--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCchhhhHHHH
Q 018882 268 DI----M--LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-GCKPDKVTYRTMVRAYSTNGMKNHAKEFQ 331 (349)
Q Consensus 268 ~~----~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (349)
.+ - .....|-.|..-....|..+.|+..--.+.+. .+-|....|..+.-+-+....+....+.+
T Consensus 1010 ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1010 RILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 00 0 12233344445556678888888765544443 34566667766655444444443333333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0012 Score=51.52 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=107.2
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChH
Q 018882 141 RAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLK 220 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 220 (349)
.-+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+.....+.. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 34678899999999999999974 458888899999999999999999999888887644 6789999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHH-HhcCChh---hHHHHHHHHhhCCCCchHHHHHHHHHHH-HhcCCHHHHHHH
Q 018882 221 QMEYLFRLMRSERIKPSCVTLCSLVRAY-GHAGKPE---KLGSVLRFIDNSDIMLDTVFFNCLVDAY-GRLKCFAEMKGV 295 (349)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~ 295 (349)
+|.+.|+..++ +.|+..+|..=++.. .+.+... .+..-++.....|..|+... .+ ...........+
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s------~~~~~l~nnp~l~~~ 238 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRS------MFNGDLMNNPQLMQL 238 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchh------hhccccccCHHHHHH
Confidence 99999999876 467777765544433 2333333 33344444444444344332 22 233333455556
Q ss_pred HHHHHh
Q 018882 296 LEVMQQ 301 (349)
Q Consensus 296 ~~~m~~ 301 (349)
...|..
T Consensus 239 ~~~m~~ 244 (304)
T KOG0553|consen 239 ASQMMK 244 (304)
T ss_pred HHHHhh
Confidence 666666
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0064 Score=41.42 Aligned_cols=88 Identities=16% Similarity=0.015 Sum_probs=38.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--chHHHHHHHHHHHHhcC
Q 018882 212 AFGRAGDLKQMEYLFRLMRSERIKPS--CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g 287 (349)
++-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..+++......+. .+......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 33445555555555555555443322 223334444555555555555555554432111 01111122233444555
Q ss_pred CHHHHHHHHHHH
Q 018882 288 CFAEMKGVLEVM 299 (349)
Q Consensus 288 ~~~~a~~~~~~m 299 (349)
+.++|+..+-..
T Consensus 90 r~~eAl~~~l~~ 101 (120)
T PF12688_consen 90 RPKEALEWLLEA 101 (120)
T ss_pred CHHHHHHHHHHH
Confidence 555555554433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00013 Score=44.42 Aligned_cols=52 Identities=25% Similarity=0.380 Sum_probs=30.3
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
+.|++++|+++|+++.... +.+...+..+..++.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666665542 335555556666666666666666666666554
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00049 Score=41.33 Aligned_cols=56 Identities=13% Similarity=-0.019 Sum_probs=27.8
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
..+...|++++|...|+.+.+..+ -+...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555554432 24445555555555555555555555555443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.014 Score=47.86 Aligned_cols=259 Identities=9% Similarity=-0.057 Sum_probs=152.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018882 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
..+.+..++..|+..+...++... -+..-|..-...+...++++++.--.++-.+.. +-......-.-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 345566677777777777777642 245555555556666666766665555444321 001111112222222222222
Q ss_pred HHHHHH---------------HHHHhcCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH--
Q 018882 151 TMEKCY---------------EKFQSAGI-QPSINTFNIL-LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVID-- 211 (349)
Q Consensus 151 ~a~~~~---------------~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-- 211 (349)
+|.+.+ +.+..... +|.-.++..+ ..++.-.|+.++|...--.+.+... ...+...++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhccc
Confidence 222222 11111111 2333333333 3455677888888888777766542 223333343
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCcHHHHH-------------HHHHHHHhcCChhhHHHHHHHHhhC---CCCchHHH
Q 018882 212 AFGRAGDLKQMEYLFRLMRSERIKPSCVTLC-------------SLVRAYGHAGKPEKLGSVLRFIDNS---DIMLDTVF 275 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~ 275 (349)
++...++.+.+...|++.+..+ |+...-. .=..-..+.|++..|.+.+.+.+.. +..++...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 3345677888888888876543 4432221 1122345789999999999998764 44567778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVT---YRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
|.....+..+.|+..+|+.--++.... |... +..-..++...++|++|++-++...+.+.+
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 888888899999999999988888765 4333 333334567778999999999888777665
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0004 Score=41.71 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=52.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+...+...|++++|...|++..+.... +...+..+..++...|++++|...++.+.+..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567789999999999999999998522 7788999999999999999999999998877653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.028 Score=45.83 Aligned_cols=106 Identities=16% Similarity=0.099 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
+.+..+.-+...|+...|..+-.+.. .|+...|...+.+++..+++++...+... . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 34444555556666666666655542 46666666677777777777655554321 1 13355666666777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHH
Q 018882 285 RLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
+.|...+|..+...+ + +..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 777776666665541 1 12334555666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.014 Score=42.32 Aligned_cols=128 Identities=12% Similarity=0.078 Sum_probs=70.5
Q ss_pred CCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHH
Q 018882 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNI 173 (349)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 173 (349)
.|+...-..|..++.+.|+..+|...|++....-.--|....-.+.++....+++..|...++.+.+.... -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555555666666666666666666666665444455555556666666666666666666666554210 01222334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 018882 174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEY 224 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 224 (349)
+.+.+...|.+..|+.-|+.....- |+...-......+.+.|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 5566666666666666666666543 233322223333445555544433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.02 Score=44.03 Aligned_cols=140 Identities=13% Similarity=-0.043 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH-----
Q 018882 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL----- 244 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 244 (349)
+.+.++..+.-.|.+.-...++.+..+...+.++.....+++.-.+.||.+.|...|++..+..-..+..+++.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345677777778888888899999888876778888899999999999999999999977654333343333333
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018882 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYR 312 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 312 (349)
...+.-++++..|...+.++...+. .|+...|.-.-+..-.|+...|.+.++.|.... |.+.+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 3445566788888888888877654 366666665556666788999999999999873 4444433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.01 Score=40.43 Aligned_cols=56 Identities=9% Similarity=-0.064 Sum_probs=26.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555554443322 22333344444555555555555554443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0018 Score=52.79 Aligned_cols=263 Identities=13% Similarity=0.009 Sum_probs=150.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHcCCChhHHHHHHHHhh----cCCCCCCCHHHHHHHHHHH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDAN----TQSFTALLSAYGRSGLFDKAFSLLEHMK----NTPDCQPDVNTYSILIKSC 73 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~ll~~~ 73 (349)
+++.|+....+.+|+...+.| ..| ...|..|..+|.-.+++++|+++...=. ..+.-.-...+-..|...+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 578899999999999999887 333 3346667777777788888887643210 0000011122223344445
Q ss_pred HhcCChhHHHHHHHH----HHhcCCC-CchHHHHHHHHHHhccCc--------------------HHHHHHHHHHHhcc-
Q 018882 74 LKAFAFDKVQALLSD----MSTQGIR-PNTVTYNTLIDAYGRAKM--------------------FAEMELTLVKMLSE- 127 (349)
Q Consensus 74 ~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~- 127 (349)
--.|.+++|.-+-.+ ..+.|-. .....+..|.+.|...|+ ++.|.++|.+-.+.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 556667766543222 1222211 123445556666655442 33344444332211
Q ss_pred ---CC-CcchhhHHHHHHHHHccCCHHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 018882 128 ---DC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ----SAGIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQK-- 196 (349)
Q Consensus 128 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 196 (349)
|- -.-...|..+-..|.-.|+++.|+...+.-. +-|-. .....+..+.+++.-.|+++.|.+.|+....
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 10 0112345555566667788888877655422 22211 2345677788888888999999888876432
Q ss_pred --cCC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHh----C-CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 197 --YHY-SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS----E-RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 197 --~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
.|- .....+.-.|...|.-..++++|+.++.+-.. . ...-....+.+|..++...|..++|..+.....
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 221 12344555677777777788888887754321 1 112344677788888888888888887765543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.013 Score=45.10 Aligned_cols=178 Identities=6% Similarity=-0.062 Sum_probs=108.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
..|+..+.+.-+..+... ...++..+-.....+..+++|++-. ....+.++.++...+.+.-..
T Consensus 134 ~lgnpqesLdRl~~L~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl--------~~Vmy~~~~~llG~kEy~iS~ 197 (366)
T KOG2796|consen 134 YLGNPQESLDRLHKLKTV--------VSKILANLEQGLAEESSIRLWRKRL--------GRVMYSMANCLLGMKEYVLSV 197 (366)
T ss_pred hcCCcHHHHHHHHHHHHH--------HHHHHHHHHhccchhhHHHHHHHHH--------HHHHHHHHHHHhcchhhhhhH
Confidence 345555555555544432 2233444444444466666666433 234455666667777777777
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHH-----HHHHHccCCHHHHHHHHHH
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT-----LRAFGNSGQIDTMEKCYEK 158 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~~~~ 158 (349)
..+.+.++...+.++.....|.+.-.+.|+.+.|...|++..+..-+.+..+.+.+ ...|.-.+++..|...+.+
T Consensus 198 d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 198 DAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 77777777655566777777777777778888888888766655334444443333 2345566677777777777
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 159 FQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
+.... +.|+...|.-.-+..-.|+...|.+.++.|.+..
T Consensus 278 i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 278 ILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred ccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 76654 2344455544444555677888888888887764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0077 Score=47.29 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc---CcHHHHHHHHHHHhccCCCcchhhH
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA---KMFAEMELTLVKMLSEDCEPDVWTM 136 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 136 (349)
+-|...|-.|..+|...|+++.|...|....+.. ++|+..+..+..++... ..-.++..+++++.... +-++...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 3445555555555555555555555555555442 23444444444433322 12344555555555443 3344444
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44445555555555555555555554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0005 Score=41.89 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDKVQALLSDMST 91 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~ 91 (349)
+.+|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|.+.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555566666666666666666655542 334455555555566665 46666666555544
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.027 Score=42.84 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=10.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
...|.+.|.+..|..-++.+.+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3444555555555555555443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.028 Score=42.81 Aligned_cols=180 Identities=14% Similarity=0.098 Sum_probs=86.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 018882 140 LRAFGNSGQIDTMEKCYEKFQSAGI--QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG 217 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 217 (349)
...+...|++.+|.+.|+.+...-. +-.....-.++.++.+.|+++.|...++...+..+.-....+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3445566777777777777665421 11233444556667777777777777777665433222222222222222111
Q ss_pred ChHHHHHHHHHHHhCCCC---CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 218 DLKQMEYLFRLMRSERIK---PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
...... ....... --...+..++.-|-.+.-...|...+..+.+. .- ..--.+...|.+.|.+..|..
T Consensus 92 ~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHHCTT-HHHHHH
T ss_pred hCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHcccHHHHHH
Confidence 111110 0000000 00123444555555555555565555554431 11 111235677888888888888
Q ss_pred HHHHHHhcC--CCCCHHHHHHHHHHHHhcCchhhhH
Q 018882 295 VLEVMQQRG--CKPDKVTYRTMVRAYSTNGMKNHAK 328 (349)
Q Consensus 295 ~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~ 328 (349)
-++.+.+.= ..-.......++.+|.+.|..+.+.
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888888761 1112345567777888888776443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.01 Score=40.93 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
..++..++.++++.|+.+....+++..- |+.++... ..+. .-......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4566666777777777766666665442 22222110 0000 12234566899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHh
Q 018882 283 YGRLKCFAEMKGVLEVMQQR-GCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~ 320 (349)
|+..|++..|+++++...+. +++.+..+|..|+.-+..
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988766 777788999999885433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0048 Score=48.70 Aligned_cols=97 Identities=8% Similarity=0.004 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHhccCcHHHHHHHHHHHhccCC--CcchhhHH
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC--EPDVWTMN 137 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 137 (349)
..|...+....+.|++++|...|+.+.+.- |+ ...+..+..+|...|++++|...|+.+.+.-. +.....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 445555554556677777777777777652 32 24566677777777777787777777765421 11233444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 138 CTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 138 ~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
.+..++...|+.+.|..+|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777888888888777765
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0073 Score=49.45 Aligned_cols=133 Identities=13% Similarity=0.022 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH----hCCCC-CcHHHHHHHHHHHHhcCChhhHHHHHHHHh----hCCC-CchHH
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMR----SERIK-PSCVTLCSLVRAYGHAGKPEKLGSVLRFID----NSDI-MLDTV 274 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~ 274 (349)
.|..|...|.-.|+++.|+...+.-. +-|-+ .....+..+..++.-.|+++.|.+.++... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444444555566666655443211 11111 112345556666666666666666665432 1111 11223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR-----GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
+..+|...|.-..+++.|+.++.+-... +..-....+.+|..+|...|..++|..+.++..+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3344566666666666666655432211 11124556666666666666666666666555444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0016 Score=46.64 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhc-----cCCCcchhhH
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS-----EDCEPDVWTM 136 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 136 (349)
.+...++..+...|+++.|..+.+.+.... +.+...|..+|.+|...|+..+|.+.|+++.. .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345556666777788888888887777763 44677777788888888888888877776643 2667766543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0022 Score=45.89 Aligned_cols=71 Identities=25% Similarity=0.158 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHH
Q 018882 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ-----RGCKPDKVTY 311 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 311 (349)
....++..+...|+++.|....+.+....+ .+...|..+|.+|...|+...|.++|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 445566667777888888888888777653 4777888888888888888888888777643 3777776653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00076 Score=41.62 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=26.5
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcC
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT 56 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 56 (349)
.+.++++.|+++++.+.+.+ |.++..|.....++.+.|++++|.+.|+...+.
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34455555555555555442 334444444555555555555555555555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0081 Score=47.44 Aligned_cols=97 Identities=11% Similarity=-0.023 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC--CchHHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI--MLDTVFFN 277 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 277 (349)
..|...+..+.+.|++++|...|+.+.+.- |+ ...+.-+...|...|++++|...|+.+.+..+ +.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 334444444455677777777777776542 22 24555666777777777777777777664321 11234444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 278 CLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+...+...|+.++|..+|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566666777777777777777665
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.018 Score=41.18 Aligned_cols=90 Identities=13% Similarity=-0.009 Sum_probs=65.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
.-+...|++++|..+|+-+.-.+ +-+..-+..|..++-..+++++|...+......+. -|+..+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 33457888888888888876554 34455567777777788888888888877655443 35555566778888888888
Q ss_pred HHHHHHHHHHhc
Q 018882 291 EMKGVLEVMQQR 302 (349)
Q Consensus 291 ~a~~~~~~m~~~ 302 (349)
.|+..|+.....
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 888888887773
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0016 Score=40.75 Aligned_cols=66 Identities=23% Similarity=0.232 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCC-HHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GC-KPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|.+++++..++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 45666777777777777777777766543 11 122 44566677777777777777777777666543
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.077 Score=46.40 Aligned_cols=252 Identities=15% Similarity=0.112 Sum_probs=140.3
Q ss_pred hhhHHHHHHHHHcCCChhHHHHH---------HHHhhcCCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHhcCCC
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSL---------LEHMKNTPDCQPDVNTYSILIKSCLKAFAFD--KVQALLSDMSTQGIR 95 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~ 95 (349)
...+.+-+..|...|.+++|.++ |+.+... ..+...++..=.+|.+.++.. +...-++++++.|-.
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 34455556667777777777654 2222111 223344555566777666543 444456777888877
Q ss_pred CchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHH-----HHHHHHHccCCHHHHHHHHHHHHhc--CCCCCH
Q 018882 96 PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMN-----CTLRAFGNSGQIDTMEKCYEKFQSA--GIQPSI 168 (349)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 168 (349)
|+... +...++-.|.+.+|.++|.+--.++.. ...|+ -...-+...|..++-..+..+-.+. .++-.
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRA--lEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP- 706 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKRSGHENRA--LEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP- 706 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHHcCchhhH--HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-
Confidence 77643 445667788888888888765322100 11111 1122233444433322222221110 11111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH----------HHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVME----------YMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (349)
.+....+...|+.++|..+.- ...+.. ..+..+...+...+-+...+.-|-++|..|-.
T Consensus 707 ---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld-~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------- 775 (1081)
T KOG1538|consen 707 ---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD-KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------- 775 (1081)
T ss_pred ---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc-hhhhhHHHHHHHHHhhccccchHHHHHHHhcc-------
Confidence 223344555677666665431 111111 12455666666666677778888888887743
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT-----------VFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
..++++.....+++++|..+-+...+. .||+ .-|...-++|.+.|+-.+|..+++++...
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 234667778889999998888776553 2332 12334556788899999999999888755
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.049 Score=39.69 Aligned_cols=126 Identities=8% Similarity=0.020 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCcHHHH
Q 018882 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER---IKPSCVTL 241 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 241 (349)
.|+...-..|..++.+.|+..+|...|.+...--+.-|....-.+.++....+++..|...++.+.+.. -.| .+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--d~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--DGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC--Cch
Confidence 455555556666677777777777777666654444566666666666666677777776666665432 122 233
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
..+.+.+...|+++.|+..|+.....-..|.... .....+.+.|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~--~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARI--YYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH--HHHHHHHHhcchhHHHH
Confidence 4455666667777777777776666543333332 23334555565555443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.013 Score=40.33 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=20.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHh
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHM 53 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 53 (349)
|..++..++.++++.|+++....+.+..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 3456777888888888888777777654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.13 Score=42.99 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSER-IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
..|...+....+....+.|..+|-++.+.+ +.++..++++++..++ .|++..|..+|+.-... ++-++...+..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 456666777777778888999999988877 5677888888888665 57888888888875543 22233334556667
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 283 YGRLKCFAEMKGVLEVMQQRGCKPD--KVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
+.+.++-..|..+|+..... +.-+ ...|..+|.--..-|+...+..+-+++..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 77888888888888855443 1112 56788888877778887766665555544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.13 Score=42.69 Aligned_cols=31 Identities=13% Similarity=-0.045 Sum_probs=20.1
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+.-.+..++.+..-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445556666666677777777777776654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0049 Score=37.92 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=31.9
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
..|.+.++++.|++.++.+.... |.+...+.....++.+.|++++|...++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555566666666666665553 334455555555566666666666666665554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.13 Score=41.98 Aligned_cols=124 Identities=14% Similarity=0.099 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (349)
.+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++...+... +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345555677778899888888766552 36899999999999999999988876532 22347789999999
Q ss_pred HhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018882 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY 318 (349)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 318 (349)
.+.|+..+|..++..+. + ..-+..|.+.|++.+|.+.--+.. |...+..+...+
T Consensus 248 ~~~~~~~eA~~yI~k~~------~----~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~ 301 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP------D----EERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRC 301 (319)
T ss_pred HHCCCHHHHHHHHHhCC------h----HHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHC
Confidence 99999999988887621 1 456778899999999987654333 444444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.073 Score=38.16 Aligned_cols=92 Identities=7% Similarity=0.037 Sum_probs=72.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 018882 174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK 253 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (349)
...-+...|++++|..+|.-+.-.++. +..-|..|..++-..+++++|...|......+ .-|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 334456789999999999988776644 67778888888888999999999998776544 2344556667888999999
Q ss_pred hhhHHHHHHHHhhC
Q 018882 254 PEKLGSVLRFIDNS 267 (349)
Q Consensus 254 ~~~a~~~~~~~~~~ 267 (349)
.+.|...|....+.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988873
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.015 Score=45.06 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCchHHHHHH
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPD-CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG--IRPNTVTYNTL 104 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l 104 (349)
..|+.-+..+ +.|++..|...|....+... -.-....+--|..++...|+++.|..+|..+.+.- .+.-+..+-.|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3566655543 56668888888877766421 01122344457777888888888888887777651 11123566667
Q ss_pred HHHHhccCcHHHHHHHHHHHhcc
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
..+..+.|+.++|..+|+++.++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777788888888888888766
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0028 Score=39.66 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcC----CCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNT----PDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMS 90 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 90 (349)
.+++.+...|...|++++|++.|++..+. +...|+ ..++..+..++...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666555421 100111 3344555555555555555555555543
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.069 Score=36.47 Aligned_cols=68 Identities=7% Similarity=0.061 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018882 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
+.......+..+...|+-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44555666777777788787777887776533 566667777788888888888888888888777753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.21 Score=43.55 Aligned_cols=178 Identities=17% Similarity=0.120 Sum_probs=107.7
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCc-----hHHHHHHHHHHhc----cCcH
Q 018882 45 KAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG-IRPN-----TVTYNTLIDAYGR----AKMF 114 (349)
Q Consensus 45 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~ 114 (349)
-..-+|.-+.+. +||. +..++....=.||-+.+++.+.+..+.+ +.-. .-.|+..+..++. ....
T Consensus 175 ~G~G~f~L~lSl--LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 175 FGFGLFNLVLSL--LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHHh--CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 334555555543 1443 3445666666677777777777665532 2211 1234444433333 3467
Q ss_pred HHHHHHHHHHhccCCCcchhhHHH-HHHHHHccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018882 115 AEMELTLVKMLSEDCEPDVWTMNC-TLRAFGNSGQIDTMEKCYEKFQSAG---IQPSINTFNILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 190 (349)
+.|.++++.+.+. -|+...|.. -.+.+...|++++|.+.|+...... .+.....+--+.-.+.-..+|++|...
T Consensus 250 ~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 250 EEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 8888888888765 465554433 3355667888888888888655321 122334455566677888899999999
Q ss_pred HHHHHhcCCCCchhhHHHHHH-HHHhcCCh-------HHHHHHHHHHH
Q 018882 191 MEYMQKYHYSWTIVTYNIVID-AFGRAGDL-------KQMEYLFRLMR 230 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~-------~~a~~~~~~~~ 230 (349)
|..+.+.+ ..+...|.-+.. ++...++. ++|.+++.+..
T Consensus 328 f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 328 FLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 98888754 335555555544 33456666 78888887764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.076 Score=44.73 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=50.4
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
.+...|+.+..+|...|++++|+..|++..+. .|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34667888888888888888888888887766 3443 35788888888888888888888888775
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.43 Score=42.71 Aligned_cols=110 Identities=16% Similarity=0.086 Sum_probs=75.9
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
.-.+.+--+.-+...|+..+|.++-.+.+ .||...|..-+.+++..+++++.+++-+..+ .+.-|.....
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 34455555666677788888888877764 5777888888888888888886666544433 2445666788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHH
Q 018882 282 AYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
+|.+.|+.++|.+++-+.... . -...+|.+.|++.+|.+.
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHH
Confidence 888888888888887644322 1 345677777877777664
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.38 Score=41.95 Aligned_cols=181 Identities=18% Similarity=0.096 Sum_probs=118.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCc-----hhhHHHHHHHHHh----cCChHHH
Q 018882 153 EKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH-YSWT-----IVTYNIVIDAFGR----AGDLKQM 222 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~~~a 222 (349)
.-+|.-+... +||. +..++....=.||-+.+++.+....+.+ +.-. .-.|+.++..++. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3344444443 2332 3455666666789999999888765532 2211 2334455544443 3467889
Q ss_pred HHHHHHHHhCCCCCcHHHHHH-HHHHHHhcCChhhHHHHHHHHhhCC---CCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 223 EYLFRLMRSERIKPSCVTLCS-LVRAYGHAGKPEKLGSVLRFIDNSD---IMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
.+++..+.+. .|+...|.. -.+.+...|++++|.+.++...... .+.....+--+...++-.++|++|...|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 9999998765 566555543 3456677899999999999765321 122344566677888999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHH-HHhcCch-------hhhHHHHHHHHHHhhh
Q 018882 299 MQQRGCKPDKVTYRTMVRA-YSTNGMK-------NHAKEFQDLVEKMDET 340 (349)
Q Consensus 299 m~~~~~~p~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~~~~~~~~ 340 (349)
+.+.. ..+..+|..+..+ +...|+. ++|.+++..+..+...
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 99864 3355556555544 4667777 8888888888777653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.37 Score=40.04 Aligned_cols=164 Identities=13% Similarity=0.027 Sum_probs=89.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSAG---IQPSINTFNILLDSYGK---AGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
..++-+|....+++...++.+.+.... +.-+..+-....-++.+ .|+.++|.+++..+......+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344455777777777777777766541 11122222333444555 677777777777755444556667776666
Q ss_pred HHHHh---------cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-hh---hHHHHH----HHHhhCC---CC
Q 018882 211 DAFGR---------AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK-PE---KLGSVL----RFIDNSD---IM 270 (349)
Q Consensus 211 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~----~~~~~~~---~~ 270 (349)
..|-. ....++|...|.+.-+. .|+..+--.++-.+...|. .+ +..++- ..+.+.| ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 65421 11256677777665543 2443332222222223332 11 222222 1111222 12
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+--.+..++.+..-.|+.++|.+..+.|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34455667888888899999999999999876
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.096 Score=43.12 Aligned_cols=125 Identities=10% Similarity=0.030 Sum_probs=83.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CCC---------CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKY-----HYS---------WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
+.+.+.|++..|...|+..... +.+ .-..++..+..++.+.+++..|+..-...++.+ ++|...+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4566777777777777665432 111 123456677777888888888888888877766 5677777
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhc
Q 018882 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE-MKGVLEVMQQR 302 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 302 (349)
..-.+++...|+++.|+..|+.+.+..+. |-.+-+.++..-.+..+..+ ..++|..|...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77778888888888888888888876532 44455555555555444433 36677777543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.57 Score=41.76 Aligned_cols=187 Identities=9% Similarity=0.001 Sum_probs=99.5
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHH------HHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 018882 24 DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL------IKSCLKAFAFDKVQALLSDMSTQGIRPN 97 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 97 (349)
.|.+..|..+.......-.++.|...|-+.....|++.-...-... ...-.--|.+++|++++-+|-++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 5888899999988888888889998888877665543211111111 111122477888888887776552
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh---------------
Q 018882 98 TVTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS--------------- 161 (349)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------- 161 (349)
..+..+.+.|++-.+.++++.--... -..-...|+.+...+.....|++|.+.|..-..
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~ 839 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFG 839 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhh
Confidence 23455566666666655554321110 011123455555555555555555554433211
Q ss_pred ------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 018882 162 ------AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 162 ------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
..++-+....-.+..++.+.|.-++|.+.+-+.. . | ...+..|...++|.+|.++-++
T Consensus 840 ~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 840 ELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1123344444555566666666666655543221 1 1 1233445555666666665544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.6 Score=41.87 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
....+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..++|++.+++-+... ++.-|.-.+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 334445556667788899999988877664 3688899999999999999998877766543 135677789
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
.+|.+.|+.++|.+.+.+.... . -...+|.+.|++.+|.++--+
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999888765432 1 567889999999998876543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.077 Score=45.49 Aligned_cols=157 Identities=17% Similarity=0.134 Sum_probs=71.8
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHH
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE 116 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (349)
..-.++++++.++.+.-.-.+.+ | ....+.++..+-+.|..+.|+++..+-. .-.....+.|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 44456666655555421111111 2 3345566666666666666665532211 12233445566666
Q ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
|.++.++. .+...|..|.......|+++-|++.|.+..+ +..|+-.|.-.|+.+.-.++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 65544332 2444666666666666666666666655432 34455555566666665555555554
Q ss_pred cCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 018882 197 YHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
.|- ++....++.-.|+.++..+++.+
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 441 22333333444555555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.057 Score=45.42 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=67.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC----VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFN 277 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (349)
+...++.+..+|...|++++|...|++..+.. |+. .+|..+..+|...|+.++|...++...+.+ .+ .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 57788899999999999999999999987754 443 358889999999999999999999988752 11 222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHhcCC
Q 018882 278 CLVD--AYGRLKCFAEMKGVLEVMQQRGC 304 (349)
Q Consensus 278 ~li~--~~~~~g~~~~a~~~~~~m~~~~~ 304 (349)
.+.. .+....+..+..++++.+...|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 01122333456667777766654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.14 Score=41.10 Aligned_cols=154 Identities=8% Similarity=0.020 Sum_probs=99.0
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCchHHHHHHHHHHhccCc
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ---GIRPNTVTYNTLIDAYGRAKM 113 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 113 (349)
+...|+..+|-..++++.+.. |.|..++...=.+|.-.|+...-...+++.... +++........+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 334567777777777777653 567777777777788888887777777776654 223233333445556677888
Q ss_pred HHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 018882 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP---SINTFNILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 190 (349)
+++|++.-++..+.+ +.|...-......+...|+++++.++..+-...--.. -.+-|=...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 888888888887766 5677777778888888888888877765533221000 011121222334556788888888
Q ss_pred HHH
Q 018882 191 MEY 193 (349)
Q Consensus 191 ~~~ 193 (349)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 864
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.27 Score=43.24 Aligned_cols=256 Identities=11% Similarity=0.113 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHH---------HHHHHhcCCCCchHHHHHHHHHHhccCc--HHHHHHHHHHHhccC
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQAL---------LSDMSTQGIRPNTVTYNTLIDAYGRAKM--FAEMELTLVKMLSED 128 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 128 (349)
.|....+.+-+..+...|.+++|.++ |+.+... ..+.-.++..=.+|.+..+ +-+...-++++.++|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 34445555666677888888877543 2222221 1233344555566665554 334444566777777
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 018882 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNI-----LLDSYGKAGHFEKMSAVMEYMQKYHYSWTI 203 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 203 (349)
-.|+.. .+...++-.|++.+|-++|.+--..+- -...|+- +..-+...|..++-..+.++--+.. -+.
T Consensus 631 e~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA--r~~ 703 (1081)
T KOG1538|consen 631 ETPNDL---LLADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA--RNI 703 (1081)
T ss_pred CCchHH---HHHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh--hhc
Confidence 667764 345567778888888888865322110 1111111 2233444555444444443321110 011
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHH------HHhCCC---CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRL------MRSERI---KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV 274 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 274 (349)
.-=.+....+...|+.++|..+.-+ +.+.+. ..+..+...+...+.+...+..|.++|..+-+.
T Consensus 704 kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 704 KEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred CCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 1112334455667777777665421 111111 223345555555556666777788888777542
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-----------HHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV-----------TYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
..++......++|.+|..+-+...+. .||.. -|...-.+|.+.|+..+|.++++.+.
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 24667788899999999888766543 33321 22333457788888888877776654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.053 Score=42.30 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=62.4
Q ss_pred chhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHH
Q 018882 202 TIVTYNIVIDAFGRA-----GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFF 276 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (349)
|-.+|-..+..+... +..+=....++.|.+-|+.-|..+|+.|+..+-+.. +.| ..++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP-~nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIP-QNVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------ccc-HHHH
Confidence 556666666665432 445555666777777787778777777776654322 111 1222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 018882 277 NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 323 (349)
......|-+.. +-+++++++|...|+.||..+-..|+.++.+.+.
T Consensus 129 Q~~F~HYP~QQ--~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQQQ--NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCchhh--hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 22222333322 3367778888888888888888888888766664
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.11 Score=35.49 Aligned_cols=90 Identities=9% Similarity=-0.058 Sum_probs=50.6
Q ss_pred HHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchH---HHHHHHHHHhccC
Q 018882 36 AYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV---TYNTLIDAYGRAK 112 (349)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 112 (349)
+++..|+++.|++.|.+....- +.....||.-..++--.|+.++|++-+++..+..-..+.. .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4556677777777776666542 4556667777777766777777766666665542111222 2222233455556
Q ss_pred cHHHHHHHHHHHhcc
Q 018882 113 MFAEMELTLVKMLSE 127 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~ 127 (349)
+-+.|..-|+..-+.
T Consensus 130 ~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 130 NDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHhHHHHHHh
Confidence 666666655554443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.085 Score=43.41 Aligned_cols=121 Identities=13% Similarity=0.110 Sum_probs=71.3
Q ss_pred CCCCCChHHHHHHHHHHHHc-----CCC---------CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHH
Q 018882 2 LGKCKQPEKAHELFQAMVDE-----GCD---------ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS 67 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 67 (349)
|.+.|++..|...|++.... +.+ .-..+++.+..++.+.+++..|++.-++..... ++|.-..-
T Consensus 218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALy 295 (397)
T KOG0543|consen 218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALY 295 (397)
T ss_pred HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHH
Confidence 45778888888888775432 111 123345666666777777777777777776654 56666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCch-HHHHHHHHHHhccCcHHH-HHHHHHHHhc
Q 018882 68 ILIKSCLKAFAFDKVQALLSDMSTQGIRPNT-VTYNTLIDAYGRAKMFAE-MELTLVKMLS 126 (349)
Q Consensus 68 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 126 (349)
.-..++...++++.|...|+++++. .|+. ..-+.|+.+-.+.....+ ..++|..|..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6667777777777777777777765 3333 333334444333333322 2455555543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.49 Score=42.98 Aligned_cols=179 Identities=14% Similarity=0.150 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch--HHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF 143 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (349)
...-+..+.+...+..|..+-+ ..+..++. .......+.+.+.|++++|...|-+.+.. +.|+ .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 3445666667777777776643 33322221 22333444556789999999888777643 2332 356666
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHH
Q 018882 144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQME 223 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 223 (349)
.....+..-..+++.+.+.|.. +...-+.|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7777788888888899988865 66666788999999999888777766544 2211 112345566666666667776
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 224 YLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
.+-..... +......++ -..+++++|.+.+..+.
T Consensus 484 ~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 66554321 333444443 35678888888776553
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.32 Score=35.17 Aligned_cols=123 Identities=7% Similarity=-0.010 Sum_probs=51.9
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchH-HHHHH--HHHHhccCcHH
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV-TYNTL--IDAYGRAKMFA 115 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~ 115 (349)
+.+..++|+.-|..+.+.+.-.-.....-.........|+...|...|++.-.....|-.. -.-.| .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 4444555555555555442100011111122233344555555555555554432222211 00111 11233455555
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
+.....+.+...+-+.....-..|.-+-.+.|++..|.+.|.++..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555554443333333333444444455555555555555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.28 Score=33.68 Aligned_cols=141 Identities=16% Similarity=0.226 Sum_probs=76.7
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHH
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (349)
..-.|..++..++..+..... +..-+|.+|.-....-+-+-..++++.+-+. .|.. ..|+....
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHH
Confidence 345677777788777776653 4445555555444444445555555544332 1221 23334444
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
...+-.+ ..+...+...+..+...|+-+...++...+.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.
T Consensus 76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333322 1233445556667777888888888888776533 467777778888888888888888888888887
Q ss_pred CCC
Q 018882 303 GCK 305 (349)
Q Consensus 303 ~~~ 305 (349)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 754
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.019 Score=30.54 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhhhccCCCC
Q 018882 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD 348 (349)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~p~ 348 (349)
.+++.+...|...|++++|..+++...++.....+...|+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 4566777777777777777777777777777766666664
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.68 Score=37.31 Aligned_cols=63 Identities=14% Similarity=0.019 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhccCcHH---HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 99 VTYNTLIDAYGRAKMFA---EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
.++..++.+|...+..+ +|.++++.+.... +-....+..-+..+.+.++.+.+.+++.+|...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34555666666655433 3444444453332 112334444555555566677777777776665
|
It is also involved in sporulation []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.69 Score=37.84 Aligned_cols=226 Identities=13% Similarity=0.073 Sum_probs=133.7
Q ss_pred CCCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHcCCChhHHHHHHH----HhhcCCCCCCCHHHHHHHHHHHHhcC
Q 018882 4 KCKQPEKAHELFQAMVDEG--CDANTQSFTALLSAYGRSGLFDKAFSLLE----HMKNTPDCQPDVNTYSILIKSCLKAF 77 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~ 77 (349)
...+.++|+..+.+...+- ......++..+..+.++.|++++++..-- -..+...-..--..|..+.+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888777665431 11124567778888889998887765432 22211100112244555666666666
Q ss_pred ChhHHHHHHHHHHhc-CCCC---chHHHHHHHHHHhccCcHHHHHHHHHHHhccC-----CCcchhhHHHHHHHHHccCC
Q 018882 78 AFDKVQALLSDMSTQ-GIRP---NTVTYNTLIDAYGRAKMFAEMELTLVKMLSED-----CEPDVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ 148 (349)
++.+++.+-..-... |..| .-.....+..+..-.+.++++++.|+...+.. ......++..+-..|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666666654443332 2222 11233446677777788999999998876542 12234578888899999999
Q ss_pred HHHHHHHHHHHHh----cCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHh----cCCCC-chhhHHHHHHHHH
Q 018882 149 IDTMEKCYEKFQS----AGIQPSINTFN-----ILLDSYGKAGHFEKMSAVMEYMQK----YHYSW-TIVTYNIVIDAFG 214 (349)
Q Consensus 149 ~~~a~~~~~~~~~----~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~ 214 (349)
+++|.-+..+..+ .++..-..-|. .|.-++...|....|.+.-++..+ .|-.+ .......+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9998776655433 23221111222 234456677887777777666543 34221 2344556778888
Q ss_pred hcCChHHHHHHHHHH
Q 018882 215 RAGDLKQMEYLFRLM 229 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~ 229 (349)
..|+.+.|+.-|+..
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 999999988777654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.56 Score=37.89 Aligned_cols=152 Identities=9% Similarity=-0.027 Sum_probs=109.2
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHH----HHHHHHHHhcCCh
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY----SILIKSCLKAFAF 79 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~ 79 (349)
..|+..+|-..++++.+. .|.|..+++.-=.++.-.|+.+.-...++++...- .||...| ....-++...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999886 57788888888889999999999999998887653 3444333 3344566678999
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 018882 80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE---DCEPDVWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
++|++.-++..+.+ +-|...-.++...+--.+++.++.++..+-... +--.-..-|=...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999988887764 346677778888888889999999887765432 10001111222233455668999999999
Q ss_pred HHH
Q 018882 157 EKF 159 (349)
Q Consensus 157 ~~~ 159 (349)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 873
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.79 Score=37.91 Aligned_cols=249 Identities=13% Similarity=0.025 Sum_probs=113.3
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHH
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNT--YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE 116 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (349)
-.|+++.|.+-|+.|... |.... ...|.-..-+.|+.+.|...-+..-... +-=...+...+...+..|+|+.
T Consensus 132 ~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred hcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 346666666666666542 22221 1122222334555555555555544432 1123455556666666666666
Q ss_pred HHHHHHHHhccC-CCcchh--hHHHHHHHH---HccCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHH
Q 018882 117 MELTLVKMLSED-CEPDVW--TMNCTLRAF---GNSGQIDTMEKCYEKFQSAGIQPSINT-FNILLDSYGKAGHFEKMSA 189 (349)
Q Consensus 117 a~~~~~~~~~~~-~~~~~~--~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~ 189 (349)
|+++++.-.... +.++.. .-..|+.+- .-..+...|...-.+..+. .|+..- --.-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 666665544332 122211 011111110 0112233344333333322 333221 1223355666667777767
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018882 190 VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-RIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
+++.+-+..+.|+. +. +....+.|+ .+.+-+++.... .++| +..+...+.++-...|++..|..--+.....
T Consensus 285 ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 76666665444332 21 112233333 333333322211 1122 3344555556666666666665555544432
Q ss_pred CCCchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 018882 268 DIMLDTVFFNCLVDAYGRL-KCFAEMKGVLEVMQQR 302 (349)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 302 (349)
.|....|..|...-... |+-.++...+.+..+.
T Consensus 359 --~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 --APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred --CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 35555665555554333 6666666666665544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.35 Score=41.65 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=42.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHH
Q 018882 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLG 258 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 258 (349)
.+.|+++.|.++.++. .+...|..|.....+.|+++-|++.|.+.. -+..|+-.|...|+.+...
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHH
Confidence 3455555554443221 144455555555555555555555555432 1333444444555555555
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
++.+.....|- ++....++.-.|+.++..+++
T Consensus 394 kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 394 KLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 55444444331 222333333445555444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.13 Score=40.19 Aligned_cols=52 Identities=12% Similarity=0.271 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Q 018882 60 QPDVNTYSILIKSCLKA-----FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA 111 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (349)
.-|..+|...+..+... +.++-....++.|.+-|+.-|..+|+.|++.+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg 120 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG 120 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc
Confidence 45666676666655543 44555666778888888888999999888877543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.63 Score=35.81 Aligned_cols=19 Identities=5% Similarity=0.016 Sum_probs=8.3
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 018882 280 VDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~ 298 (349)
|-.|.-..++..|.+.++.
T Consensus 197 ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 197 ILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHhhHHHHHHHHHHhcc
Confidence 3333444444444444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.041 Score=29.76 Aligned_cols=28 Identities=36% Similarity=0.361 Sum_probs=18.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcC
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNT 56 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 56 (349)
++..+...|.+.|++++|.++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666666667777777777666665
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.059 Score=29.14 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
++..+...|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.2 Score=39.70 Aligned_cols=78 Identities=12% Similarity=0.012 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhc-----cCCCcchhhHHH
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS-----EDCEPDVWTMNC 138 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 138 (349)
.++..++..+...++++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445556666666667777777777766653 34666667777777777777777766666554 356666665555
Q ss_pred HHHH
Q 018882 139 TLRA 142 (349)
Q Consensus 139 l~~~ 142 (349)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.2 Score=37.67 Aligned_cols=42 Identities=2% Similarity=-0.007 Sum_probs=21.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHH
Q 018882 138 CTLRAFGNSGQIDTMEKCYEKFQSAG----IQPSINTFNILLDSYG 179 (349)
Q Consensus 138 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~ 179 (349)
..+.++...|.+.++..+++++...- ..-+..+|+.++-.+.
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 34445555666666665555554432 2245555555444443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.24 Score=39.27 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|...|+...|+..|+.+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3444555555555555555555555555443 3455555555555555555555555555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.97 Score=35.93 Aligned_cols=145 Identities=10% Similarity=0.102 Sum_probs=78.0
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHH
Q 018882 72 SCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDT 151 (349)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (349)
.....|++..|..+|....... +-+...--.+..+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4456667777777666666553 223445556667777777777777777666544222222222222333333333333
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCchhhHHHHHHHHHhcCChH
Q 018882 152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY--HYSWTIVTYNIVIDAFGRAGDLK 220 (349)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 220 (349)
...+-.++-.. +-|...-..+...+...|+.+.|.+.+-.+.+. +.. |...-..++..+.--|.-+
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 33333333332 225556666677777777777777766555433 222 5555666666666655333
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.33 Score=43.99 Aligned_cols=177 Identities=8% Similarity=0.093 Sum_probs=116.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHH----HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTL----RAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL 175 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 175 (349)
....-+..+.+...++-|+.+.+.-. .+..+...+. .-+.+.|++++|...|-+-... +.| ..++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 34556777778888888887766542 2233333333 4456889999999888765543 233 2345
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
.-|....+...-..+++.+.+.|.. +...-..|+.+|.+.++.++..++.+... .|.. ..-+...+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 5566666777777888999998876 67777899999999999999888877654 3321 112445667777777777
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 299 (349)
+|..+-..... +...... .+-..+++++|.+.+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 77766655443 2222222 344567788888777644
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.68 Score=33.66 Aligned_cols=131 Identities=12% Similarity=0.121 Sum_probs=56.0
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-CC
Q 018882 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-DI 269 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 269 (349)
++.+.+.+++|+...+..++..+.+.|++.....++ ..++-+|.......+-.+. +....+.++--.|.+. +
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh-
Confidence 334444555555566666666666655543333222 3333333333332222111 1222222222222211 1
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
..+..++..+...|++-+|.++.+..... +......++.+..+.++...--.+++-+++
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12334555566666666666655543221 112223445555555555444444444444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.61 Score=32.75 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=21.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCC--CchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 180 KAGHFEKMSAVMEYMQKYHYS--WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+.|++++|.+.|+.+...-+. -....--.++.+|.+.+++++|...+++.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444444444444444433110 1122333344444444444444444444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.94 Score=35.53 Aligned_cols=86 Identities=6% Similarity=-0.001 Sum_probs=35.4
Q ss_pred CChhHHHHHHHHHHhcCC--CCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCC--CcchhhHHHHHHHHHccCCHHHH
Q 018882 77 FAFDKVQALLSDMSTQGI--RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC--EPDVWTMNCTLRAFGNSGQIDTM 152 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 152 (349)
|++..|...|...++... .-....+..|..++...|++++|..+|..+.+.-. +--+..+..+..+..+.|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 345555555544444311 11122333344444455555555554444443310 00112333344444444444444
Q ss_pred HHHHHHHHhc
Q 018882 153 EKCYEKFQSA 162 (349)
Q Consensus 153 ~~~~~~~~~~ 162 (349)
..+|+++.+.
T Consensus 235 ~atl~qv~k~ 244 (262)
T COG1729 235 CATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.2 Score=39.91 Aligned_cols=105 Identities=15% Similarity=0.268 Sum_probs=72.2
Q ss_pred CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchH
Q 018882 22 GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC--QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV 99 (349)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 99 (349)
|.+.+..+...++..-....+++++...+-+++..... .|+... .++++.+. .-++++++.++..=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 44555666666666666677888888888887765321 122222 22333333 346778888888778888888999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccC
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
+++.+|+.+.+.+++.+|.++...|..+.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999888888888887776553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.7 Score=36.83 Aligned_cols=145 Identities=14% Similarity=0.087 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018882 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (349)
.+|..+++.-.+..-++.|..+|-++.+.+ +.+++..+++++..++. |+...|.++|+.-... .+.+..-..-.+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 456667777777777888888888888877 56777788888876654 6777788888775544 22233333455666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (349)
+...++-+.|..+|+..... +..+ ...|..+|..-..-|+...+..+-++|.+. .|-..+.......|
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 77788888888888754432 1112 467788888778888888887777777653 34443333333333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.75 Score=32.52 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=19.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3444444444555555555544443 23444455555555443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.77 Score=32.46 Aligned_cols=127 Identities=8% Similarity=0.005 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
...++..+...+........++.+...+. .+....+.++..|++.+ ..+..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 35677777778889999999999887764 57888999999998764 3444455542 1233445567788888
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL-KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 320 (349)
.+.++++..++..+.. ... .+..+... ++++.|.+++.+- -++..|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 8888888888876643 222 23333333 7788888877641 267788888877654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.73 Score=31.65 Aligned_cols=91 Identities=10% Similarity=0.001 Sum_probs=43.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCC
Q 018882 177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC---VTLCSLVRAYGHAGK 253 (349)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 253 (349)
++...|+.+.|++.|.+....-+. ....||.-.+++.-.|+.++|++=+++..+..-..+. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344556666666666555544322 4555666666666666666665555555443111111 122222223444455
Q ss_pred hhhHHHHHHHHhhCC
Q 018882 254 PEKLGSVLRFIDNSD 268 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~ 268 (349)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555544444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=2 Score=36.67 Aligned_cols=79 Identities=10% Similarity=-0.029 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018882 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
+|.++-++..+.+ +-|......+..+....++++.|...|++....+ +....+|....-.+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444443 2244444444444444444555555555554432 2223333333333444555555555555543
Q ss_pred h
Q 018882 161 S 161 (349)
Q Consensus 161 ~ 161 (349)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 3
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.48 Score=35.08 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHH--
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP--DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT-- 103 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 103 (349)
..+..+...|.+.|+.+.|++.|.++..... .+ -...+-.++......+++..+...+.+....--.+.......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCT-SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4567788888888888888888888776421 22 234456677777788888888777776654311111111111
Q ss_pred -HHH--HHhccCcHHHHHHHHHHHh
Q 018882 104 -LID--AYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 104 -l~~--~~~~~~~~~~a~~~~~~~~ 125 (349)
... .+...+++..|-+.|-+..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1234567777777666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.51 Score=34.96 Aligned_cols=62 Identities=19% Similarity=0.118 Sum_probs=38.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcc--hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD--VWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666777777777777777777665533322 34455566666666777766666665544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.4 Score=34.35 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=36.0
Q ss_pred HccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 018882 144 GNSGQIDTMEKCYEKFQSAG--IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAF 213 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (349)
.+.|++++|.+.|+.+.... -+-...+--.++-++.+.++++.|+...++..+..+......|-..|.++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 35566666666666665442 11123344455556666666666666666665543332233333334333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.90 E-value=1.3 Score=34.04 Aligned_cols=224 Identities=13% Similarity=-0.060 Sum_probs=132.5
Q ss_pred cCChhHHHHHHHHHHhcCCC-CchHHHHHHHHHHhccCcHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHccCCHHHHH
Q 018882 76 AFAFDKVQALLSDMSTQGIR-PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 76 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555566666665554322 12456666777777778888777777776642 22444555666666667777777787
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018882 154 KCYEKFQSAGIQPSINTFNILLD-SYGKAGHFEKMSAVMEYMQKYHY--SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
..+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777777654332 122222223 67777888888888877754221 1123333334444556677777777777776
Q ss_pred hCCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 231 SERIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 231 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
... .. ....+..+...+...++.+.+...+......... ....+..+...+...+..+.+...+......
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 543 22 3556666667777777777777777776654322 2333334444444556677777777766655
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.6 Score=35.13 Aligned_cols=163 Identities=12% Similarity=0.141 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 169 NTFNILLDSYGKAGHFE---KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
.+...++.+|...+..+ +|.++++.+...... .+..+-.-+..+.+.++.+.+.+.+.+|...- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34566667777666544 455555555443322 34555555666666788888888888887652 21233444444
Q ss_pred HHH---HhcCChhhHHHHHHHHhhCCCCchHH-HHHHH-HHH---HHhcC------CHHHHHHHHHHHHhc-CCCCCHHH
Q 018882 246 RAY---GHAGKPEKLGSVLRFIDNSDIMLDTV-FFNCL-VDA---YGRLK------CFAEMKGVLEVMQQR-GCKPDKVT 310 (349)
Q Consensus 246 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l-i~~---~~~~g------~~~~a~~~~~~m~~~-~~~p~~~~ 310 (349)
..+ ... ....+...+..+....+.|... ....+ +.. ..+.+ ..+....+++...+. +.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 443 332 2344555555554333333332 11111 111 11111 133444444433322 22333333
Q ss_pred HHHHH-------HHHHhcCchhhhHHHHHHH
Q 018882 311 YRTMV-------RAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 311 ~~~l~-------~~~~~~g~~~~a~~~~~~~ 334 (349)
-.++. ..+.+.++++.|.+.++..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 33222 2356678899999888754
|
It is also involved in sporulation []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.87 E-value=3.8 Score=39.24 Aligned_cols=135 Identities=14% Similarity=0.110 Sum_probs=75.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSIN----TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (349)
.+..--+.|.+.+|+.++ .|+.. .|.+....+.....+++|.-.|+..-+. .-.+.+|.
T Consensus 914 ~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~ 976 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYK 976 (1265)
T ss_pred HHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHH
Confidence 333334555555555444 33433 3444555556677777777777654321 23456677
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
.+|+|.+|..+..++.... .--..+-..|+.-+...+++-+|-++..+.... |. ..+..|++...+++|.+
T Consensus 977 ~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlr 1047 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALR 1047 (1265)
T ss_pred HhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHH
Confidence 7888888888887764211 011112255667777788877777777666542 11 23344556666666666
Q ss_pred HHHHH
Q 018882 295 VLEVM 299 (349)
Q Consensus 295 ~~~~m 299 (349)
+....
T Consensus 1048 va~~~ 1052 (1265)
T KOG1920|consen 1048 VASKA 1052 (1265)
T ss_pred HHHhc
Confidence 55433
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.6 Score=34.77 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=33.6
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA-GIQPSINTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
.++..+...++..++..+++....++|+..... +...|...|..+|+.....|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 444445555555555555555555555554443 333455555555555555555555555444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.5 Score=34.21 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=28.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRSE--RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
...|.+.|.+..|..-++.|.+. ..+-....+-.+..+|...|-.++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 44555666666666666666544 0111123344445555566665555555444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.7 Score=34.56 Aligned_cols=146 Identities=12% Similarity=0.114 Sum_probs=84.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
......|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3455677777777777777665433 455566677777778888888877777654321122222222334444444444
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCchh
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR--GCKPDKVTYRTMVRAYSTNGMKN 325 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~ 325 (349)
+...+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..++..+.--|..+
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 444444444432 125556666777778888888887766555544 322 4555566666665555333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.11 Score=26.65 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHh
Q 018882 311 YRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
|..|...|.+.|++++|.++++....+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4445555555555555555555544333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.31 E-value=3.2 Score=35.84 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM-LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+-..+..++-+.|+.++|.+.++++.+.... -+..+...|+.++...+.+.++..++.+..+.
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 33345666666777777777777777643221 23445566777777777777777777776543
|
The molecular function of this protein is uncertain. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.24 E-value=4 Score=36.73 Aligned_cols=244 Identities=11% Similarity=-0.003 Sum_probs=131.3
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHH----H-HHhcCChhHHHHHHHHHHh-------cCCCCchHHHHHHHHHHhc
Q 018882 43 FDKAFSLLEHMKNTPDCQPDVNTYSILIK----S-CLKAFAFDKVQALLSDMST-------QGIRPNTVTYNTLIDAYGR 110 (349)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 110 (349)
...|.++++.....+ +...-..+.. + ....+|.+.|..++....+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 456888888777664 2332222222 2 3356788889988888876 44 33455667777766
Q ss_pred cC-----cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----h
Q 018882 111 AK-----MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN-SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG----K 180 (349)
Q Consensus 111 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 180 (349)
.. +.+.|..++.+....| .|+....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence 43 5677888888888777 5555444333333333 34677899999998888743 22222222222 2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH-HHH---Hh----cC
Q 018882 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV-RAY---GH----AG 252 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~----~~ 252 (349)
..+...|...+.+.-+.| .|...--...+..+.. +.++.+...+..+.+.|... ..+-...+ ... .. ..
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhcccccccccccc
Confidence 346788888888888877 2222222222233333 66666666666665554321 11111111 111 01 11
Q ss_pred ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcC
Q 018882 253 KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL----KCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~ 303 (349)
+.+.+...+......| +......+...|... .+++.|...+......+
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 3444555555544433 334444444444332 24566666666555543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.15 Score=26.10 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
+|+.|...|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999999988854
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.17 E-value=2.6 Score=34.28 Aligned_cols=130 Identities=14% Similarity=0.189 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhcCC---CCchhhHHHHHHHHHhcCCh-
Q 018882 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGK--AG----HFEKMSAVMEYMQKYHY---SWTIVTYNIVIDAFGRAGDL- 219 (349)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~- 219 (349)
++...+++.|.+.|+.-+..+|-+....... .. ....|..+++.|++..+ .++-..+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455667777777776666555442222222 11 24567777888877653 2233444444332 33333
Q ss_pred ---HHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 220 ---KQMEYLFRLMRSERIKPSCV--TLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 220 ---~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
+.++.+|+.+.+.|...+.. ..+.++ ++..... ...+..+++.+.+.++++....|..+.-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iL-aL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHIL-ALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 44566777777666544332 222232 2222221 33566777778888877776666655433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.10 E-value=2.8 Score=34.51 Aligned_cols=229 Identities=10% Similarity=-0.026 Sum_probs=117.4
Q ss_pred HHcCCChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHH----HHhcC-CCCchHHHHHHHHHHhc
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPD-CQPDVNTYSILIKSCLKAFAFDKVQALLSD----MSTQG-IRPNTVTYNTLIDAYGR 110 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~ 110 (349)
+....+.++|+..|.+....-. ...-..++..+..+.++.|.+++++..--. ..+.. -..--..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778888888776655311 011224456666777777777665543221 11110 00012334445555555
Q ss_pred cCcHHHHHHHHHHHhcc-CCCc---chhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhc
Q 018882 111 AKMFAEMELTLVKMLSE-DCEP---DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-----IQPSINTFNILLDSYGKA 181 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 181 (349)
..++.+++.+-..-... |..| .-.....+..++...+.++++++.|+...+.- ......++..|-..|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554443322 1112 11223345566666777777777777765421 112344677777777777
Q ss_pred CCHHHHHHHHHHHHh----cCCCCch------hhHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCCc-HHHHHHHHH
Q 018882 182 GHFEKMSAVMEYMQK----YHYSWTI------VTYNIVIDAFGRAGDLKQMEYLFRLMR----SERIKPS-CVTLCSLVR 246 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~----~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~-~~~~~~l~~ 246 (349)
.|.++|.-...+..+ .++. |. ...-.+.-++...|....|.+.-++.. ..|-.+. ......+..
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 787777766554432 2221 11 112223344556666666666655543 2332221 223344556
Q ss_pred HHHhcCChhhHHHHHHHHhh
Q 018882 247 AYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~ 266 (349)
.|...|+.+.|+.-++....
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 66677777776666665543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=3.4 Score=35.39 Aligned_cols=146 Identities=14% Similarity=0.052 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 018882 149 IDTMEKCYEKFQSA-GIQPS-INTFNILLDSYGK---------AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG 217 (349)
Q Consensus 149 ~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 217 (349)
.+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++-+...+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 45688888888722 23343 4445544443332 22355666777777777644 7777777777777788
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch-HHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 218 DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD-TVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
+++.|...|++....+ +-...+|......+.-.|+.++|.+.++...+..+.-- .......+..|+..+ .+.|.+++
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 8999999999887754 33345566566666778999999999988776543211 222233344565544 45566655
Q ss_pred H
Q 018882 297 E 297 (349)
Q Consensus 297 ~ 297 (349)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.93 E-value=3.6 Score=35.05 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHhhCCCCc----hHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhh
Q 018882 254 PEKLGSVLRFIDNSDIML----DTVFFNCLVDA--YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~----~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 327 (349)
+.....+-+.+.+.|+.| +...-|.|..+ +...|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 333444444455666654 33445555444 5568888888766555554 578999999999999999999999
Q ss_pred HHHHHHHH
Q 018882 328 KEFQDLVE 335 (349)
Q Consensus 328 ~~~~~~~~ 335 (349)
..++..+.
T Consensus 515 ~~~l~~LP 522 (549)
T PF07079_consen 515 WEYLQKLP 522 (549)
T ss_pred HHHHHhCC
Confidence 99887653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.91 E-value=1.5 Score=30.80 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=7.2
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 018882 142 AFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~ 160 (349)
+|.+.+++++|...+++++
T Consensus 56 ayy~~~~y~~A~a~~~rFi 74 (142)
T PF13512_consen 56 AYYKQGDYEEAIAAYDRFI 74 (142)
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 3333333333333333333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.84 Score=36.56 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH
Q 018882 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH---YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (349)
|.+.+..+...++..-....+++.++..+-+++... ..|+... ...++.+ -.-++++++.++..=++-|+.||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 445555566666665555667777777776665431 1111111 1222222 2335667777777777777778888
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018882 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
+++.++..+.+.+++..|.++...+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888777777777666543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.84 E-value=3.4 Score=34.47 Aligned_cols=290 Identities=13% Similarity=0.108 Sum_probs=172.0
Q ss_pred hHHHHHHHHH--cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCchHH--HH
Q 018882 29 SFTALLSAYG--RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS--CLKAFAFDKVQALLSDMSTQGIRPNTVT--YN 102 (349)
Q Consensus 29 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~ 102 (349)
.|..|-.++. -.|+-..|.++-.+..+. +..|....-.++.+ -.-.|+++.|.+-|+.|... |.... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 3555555544 346777777776665432 13455555555543 34468999999999999863 22221 22
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCCHH--HHHHHHHHHH
Q 018882 103 TLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-IQPSIN--TFNILLDSYG 179 (349)
Q Consensus 103 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~ 179 (349)
.|.-..-+.|..+.|.++-+...... +.-...+...+...+..|+++.|+++++.-.+.. +.++.. .-..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 33333456788888888877776543 3335677888888999999999999988766542 233322 1222332211
Q ss_pred ---hcCCHHHHHHHHHHHHhcCCCCchhhH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018882 180 ---KAGHFEKMSAVMEYMQKYHYSWTIVTY-NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 180 ---~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
-..+...|...-.+..+ +.|+..-- -.-..++.+.|+..++-.+++.+-+....| .++...+ ..+.|+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~lY~--~ar~gd-- 309 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIALLYV--RARSGD-- 309 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHHHHH--HhcCCC--
Confidence 12345555555444444 33443322 233567788999999999999887764444 4333222 334454
Q ss_pred hHHHHHHHHhhC-CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCchhhhHHHHH
Q 018882 256 KLGSVLRFIDNS-DIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY-STNGMKNHAKEFQD 332 (349)
Q Consensus 256 ~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~ 332 (349)
.+..-++...+. .++| +......+..+-...|++..|..--+...+. .|....|..|.+.- ...|+-.++...+.
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 344433333221 1222 4556666777888889988888777666654 67777777777664 34488777777665
Q ss_pred HH
Q 018882 333 LV 334 (349)
Q Consensus 333 ~~ 334 (349)
+.
T Consensus 388 qa 389 (531)
T COG3898 388 QA 389 (531)
T ss_pred HH
Confidence 44
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.082 Score=26.69 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=14.3
Q ss_pred CCChhhHHHHHHHHHcCCChhHHH
Q 018882 24 DANTQSFTALLSAYGRSGLFDKAF 47 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~ 47 (349)
|-+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345566666666666666666554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.77 E-value=1.8 Score=31.13 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=21.9
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
+.++.+++..++..+.-..+-.|...++..+ .++..|++.+|..+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555554431111122222222 234455555555555554443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.68 E-value=2 Score=31.31 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
+.+..+.+.+++|+...+..+++.+.+.|++.....++.. ++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3444455556666666666666666666665544444332 22333333332221111 1222333333333322
Q ss_pred CCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018882 93 GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
=...+..++..+...|++-+|+++.++..... ......++.+..+.+|...-..+++-.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00123445555666666666666665542211 111233444444555544444444333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.66 E-value=2 Score=31.30 Aligned_cols=140 Identities=13% Similarity=0.079 Sum_probs=98.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchH-HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchh-hHHH
Q 018882 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV-TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW-TMNC 138 (349)
Q Consensus 61 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 138 (349)
.....|...++ +.+.+..++|+.-|.++.+.|..--+. ............|+...|...|+++-.....|-.. -...
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 35566766665 456778899999999999987542221 22233455678899999999999998765445433 1111
Q ss_pred H--HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018882 139 T--LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW 201 (349)
Q Consensus 139 l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 201 (349)
+ .-.+...|.+++...-.+.+...+-+.-...-..|.-+-.+.|++..|...|..+......|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 2 22356889999998888887766655555566777778889999999999999987644333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.60 E-value=2.6 Score=32.34 Aligned_cols=227 Identities=15% Similarity=0.026 Sum_probs=154.2
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCchHHHHHHHHHHhccCcHHHHH
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRPNTVTYNTLIDAYGRAKMFAEME 118 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 118 (349)
.+....+...+...............+......+...+.+..+...+...... ........+......+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666677777666654210113567777788888889999888888877652 23445566777777777888888999
Q ss_pred HHHHHHhccCCCcchhhHHHHHH-HHHccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 119 LTLVKMLSEDCEPDVWTMNCTLR-AFGNSGQIDTMEKCYEKFQSAGI--QPSINTFNILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
..+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9998888654333 122223333 78899999999999999865321 1233444444455677889999999999888
Q ss_pred hcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018882 196 KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
..........+..+...+...++++.+...+......... ....+..+...+...+..+.+...+.......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7643214677788888888888999999999888765321 23444444445556677888888888877654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.50 E-value=3 Score=32.81 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHHhccCCCcchh---hHHHHHHHHHccCCHHHHHHHHHHHH
Q 018882 112 KMFAEMELTLVKMLSEDCEPDVW---TMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
.+.++|+.-|+++.+.......+ ....++....+.+++++....+.++.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 45667777777666543222222 23345566666666666666666654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.89 Score=29.27 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=20.7
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
+.+-++.+....+.|++.+..+.+++|-+.+++..|.++|+-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444455555555555555555544444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.43 E-value=4.1 Score=34.10 Aligned_cols=66 Identities=11% Similarity=-0.034 Sum_probs=50.4
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP---SCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
....+|..++..+.+.|.++.|...+..+...+... .+.....-.+..-..|+...|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356778888999999999999999999887643111 334455556677788999999999988776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.37 E-value=3 Score=32.36 Aligned_cols=90 Identities=18% Similarity=0.119 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCcHHHHH
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKY----HYSWT-IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE---RIKPSCVTLC 242 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 242 (349)
+...-+.+.+...+++|-..+.+-... .--++ -..|-..|-.+....++..|...++.--+. .-+-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 344445556666666665544332111 00111 123444455555666788888888764322 1233456677
Q ss_pred HHHHHHHhcCChhhHHHHH
Q 018882 243 SLVRAYGHAGKPEKLGSVL 261 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~ 261 (349)
.|+.+| ..|+.+++..++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 777766 456776665554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.29 E-value=2.2 Score=30.69 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=24.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 180 KAGHFEKMSAVMEYMQKYHYS-WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+.++.+++..++..+.-..+. +...++. ...+...|+|.+|..+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhc
Confidence 445666666666665543211 1112222 2234456666666666666544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.18 E-value=3.9 Score=33.23 Aligned_cols=130 Identities=13% Similarity=0.245 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHhc--c----CcHHHHHHHHHHHhccCC---CcchhhHHHHHHHHHccCCH-
Q 018882 80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGR--A----KMFAEMELTLVKMLSEDC---EPDVWTMNCTLRAFGNSGQI- 149 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~- 149 (349)
++...+++.|.+.|+.-+..+|-+....... . .....+..+|+.|.+... .++...+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556677888888887777666553333222 1 135567777777776632 2333344444332 33332
Q ss_pred ---HHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 018882 150 ---DTMEKCYEKFQSAGIQPSI--NTFNILLDSYGKAGH--FEKMSAVMEYMQKYHYSWTIVTYNIVID 211 (349)
Q Consensus 150 ---~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 211 (349)
+.++.+|+.+.+.|+..+. ...+.++........ ...+.++++.+.+.++++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4456667777766654432 223333322222211 3356666777777777666666655543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.3 Score=24.37 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+|..+...|...|++++|...|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4455555555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.93 E-value=3.2 Score=31.56 Aligned_cols=186 Identities=14% Similarity=0.076 Sum_probs=102.7
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHH
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE 116 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (349)
|-..|-..-|.-=|.+..... |.-...||-+.-.+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-
T Consensus 75 YDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHh
Confidence 334455555555555555442 3345678888888888999999999999888764332222223222 3345688888
Q ss_pred HHHHHHHHhccCC-CcchhhHHHHHHHHHccCCHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 117 MELTLVKMLSEDC-EPDVWTMNCTLRAFGNSGQIDTMEKCY-EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 117 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
|.+-+.+..+.+. .|-...|-.+. ...-++.+|..-+ ++... .|..-|...|-.+.- |+.. ...+++.+
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~ 222 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERL 222 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHH
Confidence 8887777766541 22222232222 2334555555433 33332 244444444333322 1111 11222222
Q ss_pred HhcCC------CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018882 195 QKYHY------SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234 (349)
Q Consensus 195 ~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (349)
....- ..-..||--+...+...|+.++|..+|+-....++
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 22110 11257888888889999999999999988876543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.83 E-value=1.4 Score=28.37 Aligned_cols=44 Identities=9% Similarity=0.239 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
+.+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44444444445555555555556666666666666666655554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.2 Score=29.04 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=9.9
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 018882 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEK 158 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 158 (349)
+.|++....+.+++|.+.+++..|.++++-
T Consensus 41 lVP~P~ii~aALrAcRRvND~a~AVR~lE~ 70 (108)
T PF02284_consen 41 LVPEPKIIEAALRACRRVNDFALAVRILEG 70 (108)
T ss_dssp B---HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333333333333333333333333333333
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.68 E-value=2.7 Score=31.54 Aligned_cols=79 Identities=6% Similarity=-0.067 Sum_probs=54.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHccCCH
Q 018882 73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE---DCEPDVWTMNCTLRAFGNSGQI 149 (349)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 149 (349)
+.+.|+ +.|...|-.+...+.--++.....|...|. ..+.+++.+++.+..+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 567777777777665556666666666665 56677788877776643 3356778888888888888888
Q ss_pred HHHH
Q 018882 150 DTME 153 (349)
Q Consensus 150 ~~a~ 153 (349)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8764
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.9 Score=28.19 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=26.1
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555556666666666666666666666666666665544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.58 E-value=6.4 Score=34.10 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018882 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYS-WTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
.+..++.+.|+.++|++.++++.+.... -.......|+.++...+.+.++..++.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444455566666666666666543211 123344555666666666666666665543
|
The molecular function of this protein is uncertain. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.35 E-value=8.2 Score=34.79 Aligned_cols=151 Identities=16% Similarity=0.144 Sum_probs=69.9
Q ss_pred CCCCChHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHcCC-----ChhHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 018882 3 GKCKQPEKAHELFQAMVD-------EGCDANTQSFTALLSAYGRSG-----LFDKAFSLLEHMKNTPDCQPDVNTYSILI 70 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 70 (349)
+...|++.|+..|+...+ .| .+.....+..+|.+.. +.+.|+.++.+....+ .|+.......+
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~ 334 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVL 334 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 345666666666666655 33 3334455555555532 4455666666665553 34444333222
Q ss_pred HHHHh-cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh----ccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHc
Q 018882 71 KSCLK-AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG----RAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN 145 (349)
Q Consensus 71 ~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (349)
.-... ..+...|.++|....+.|.. ..+-.+..+|. ...+...|..++.+..+.| .|....-...+..+..
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~ 410 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV 410 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc
Confidence 22222 23455666666666666532 22222222221 1234556666666666555 2222222222222223
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 018882 146 SGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~ 163 (349)
+.++.+.-.+..+.+.|
T Consensus 411 -~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 411 -GRYDTALALYLYLAELG 427 (552)
T ss_pred -ccccHHHHHHHHHHHhh
Confidence 44444444444444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.27 Score=24.53 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=15.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcC
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNT 56 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 56 (349)
+|..+..++...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555555566666666666666555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.29 Score=24.62 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=8.6
Q ss_pred chhhHHHHHHHHHhcCChHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQM 222 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a 222 (349)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 334444444444444444433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.58 Score=23.16 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.|..+...+...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.06 E-value=12 Score=36.15 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
|.+....+.....+++|.-.|+..-+ ....+.+|...|++.+|..+...+....-. -..+-..|+.-+..
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHH
Confidence 34444445566777777777765421 223467788888888888887776542111 11222567777888
Q ss_pred cCCHHHHHHHHHHHHhc
Q 018882 286 LKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 286 ~g~~~~a~~~~~~m~~~ 302 (349)
.+++-+|-+++.+....
T Consensus 1012 ~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred cccchhHHHHHHHHhcC
Confidence 88888888887776643
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.04 E-value=9.5 Score=34.88 Aligned_cols=89 Identities=13% Similarity=0.175 Sum_probs=44.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH-HHhcCC-----------HHHHHHHHHHHHhcC-----CC-
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA-YGRLKC-----------FAEMKGVLEVMQQRG-----CK- 305 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~-----------~~~a~~~~~~m~~~~-----~~- 305 (349)
...-+...|+++.|..+|..+.+.. .-....|.++.- ...... ...|..+.+.....+ +.
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~ 497 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSR 497 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-H
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccH
Confidence 3445667788888888887766432 112233333222 222222 334555555444331 11
Q ss_pred CCHHHHHHHHHH-----HHhcCchhhhHHHHHHH
Q 018882 306 PDKVTYRTMVRA-----YSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 306 p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~ 334 (349)
.+..|+..|+.. +...|+++.|.+.++.+
T Consensus 498 ~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 498 KNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 124555555543 46788888888766654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.49 Score=23.46 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
..|..+...+...|++++|.+.+++..++.+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45778888999999999999999999887653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.80 E-value=8.8 Score=33.97 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=63.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-cCCChhHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHhcCChhH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYG-RSGLFDKAFSLLEHMKNTPDCQ-PDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+.|..+.+.++|++-++. ++.+...|......+. ..|+.+.....|+.....-|.. .....|...|..-..++++..
T Consensus 91 klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred HhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 457788889999988874 6777777877666544 4577888888888887654422 234557777777777888888
Q ss_pred HHHHHHHHHhc
Q 018882 82 VQALLSDMSTQ 92 (349)
Q Consensus 82 a~~~~~~~~~~ 92 (349)
...++++.++.
T Consensus 170 v~~iyeRilei 180 (577)
T KOG1258|consen 170 VANIYERILEI 180 (577)
T ss_pred HHHHHHHHHhh
Confidence 88888888764
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.37 E-value=3.9 Score=29.03 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=25.9
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
.++++++..+++.+.-..+-.+...++...+ +...|++++|..+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 5556666666665554422122333333333 44566666666666666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.77 Score=24.02 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+++.+...|...|++++|..++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56788888899999999999888887653
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.81 E-value=3.8 Score=30.78 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC---CCCchHHHHHHHHHHHHhcCCHHHH
Q 018882 220 KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS---DIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
+.|...|-.+...+.--++.....+.. |....+.+++..++-...+. +-.+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444443332223333333322 22344455555555443321 2134455555555555555555444
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.50 E-value=4.4 Score=30.45 Aligned_cols=90 Identities=9% Similarity=0.011 Sum_probs=66.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 211 DAFGRAGDLKQMEYLFRLMRSERIKPS-----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
.-+...|++++|..-|...++.- ++. ...|..-..++.+.+.++.|+.-....++.++. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 34678899999999999988753 222 234555556778888999998888888877642 33344444667888
Q ss_pred cCCHHHHHHHHHHHHhc
Q 018882 286 LKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 286 ~g~~~~a~~~~~~m~~~ 302 (349)
...+++|+.=|+.+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 99999999999999887
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=11 Score=32.58 Aligned_cols=95 Identities=8% Similarity=0.019 Sum_probs=61.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
......+...|+++.+.+.+...... +.....+...+++...+.|++++|...-.-|....+. ++..........-..
T Consensus 327 ~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l 404 (831)
T PRK15180 327 QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADAL 404 (831)
T ss_pred HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHH
Confidence 33444566778888887777665543 2334556777788888888888888887777766554 444444433334455
Q ss_pred CChHHHHHHHHHHHhCC
Q 018882 217 GDLKQMEYLFRLMRSER 233 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~ 233 (349)
|-++++...|+++...+
T Consensus 405 ~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 405 QLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHHhccC
Confidence 66778888887776543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.93 Score=22.44 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 310 TYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+|..+...|...|+++.|.+.++...++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555556666666666666666555544
|
... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.29 E-value=5 Score=28.49 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHcCCChhHHHHHHHHhhcCC
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQ-SFTALLSAYGRSGLFDKAFSLLEHMKNTP 57 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 57 (349)
.++++++..+++.|.-. .|+.. .-..-...+...|++.+|+.+|+.+.+..
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 57788899999988765 45432 22333445778999999999999998763
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.20 E-value=15 Score=33.82 Aligned_cols=252 Identities=9% Similarity=-0.042 Sum_probs=115.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc
Q 018882 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS 146 (349)
Q Consensus 67 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (349)
...+..+.+.+++.....++. . .+.+...-.....+....|+.++|......+=..| ......+..++..+.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHc
Confidence 344555566667766655221 1 13455555666777778888777776666665544 33455677777777765
Q ss_pred CCHHHHH--HHHHHHHhcCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 018882 147 GQIDTME--KCYEKFQSAGIQPSINTFNILLDSYGK------------AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 147 ~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
|...... +=+..+...| +...-..+...+.. ..+...+...+.. .+|+...-..++.+
T Consensus 177 g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~ 248 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVA 248 (644)
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHH
Confidence 5543322 1122222222 22222222221100 0011111111110 11222111111111
Q ss_pred HH--hcCChHHHHHHHHHHHhCC-CCCcH--HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC
Q 018882 213 FG--RAGDLKQMEYLFRLMRSER-IKPSC--VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 213 ~~--~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
+. ...+.+.|..++....... ..+.. .+...+.......+..+++...++...... .+......-+..-.+.+
T Consensus 249 l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 249 FASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHcc
Confidence 11 2345577777777653332 22211 223333333333322344555555443322 23334444455555777
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 288 CFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 288 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
+++.+...+..|.... .-...-.--+.+++...|+.++|..+++.+.
T Consensus 327 dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 327 DRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777777664432 1123333445556566777777777776653
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=12 Score=32.35 Aligned_cols=90 Identities=9% Similarity=0.121 Sum_probs=50.9
Q ss_pred HHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHH
Q 018882 36 AYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA 115 (349)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (349)
.+...|+++.+...+......- .....+...+++..-+.++++.|..+-.-|....+. ++.......-..-..|-++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~--~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKII--GTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhh--cCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHH
Confidence 3445677777766665554332 234455566666667777777777776666665444 3333332222333345566
Q ss_pred HHHHHHHHHhccC
Q 018882 116 EMELTLVKMLSED 128 (349)
Q Consensus 116 ~a~~~~~~~~~~~ 128 (349)
++.-.|+++....
T Consensus 409 ~~~~~wk~~~~~~ 421 (831)
T PRK15180 409 KSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHhccC
Confidence 7776676666543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.72 E-value=9.2 Score=30.67 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=40.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
++...+.|...|.+.+|.++.+...... +.+...+..++..+...|+--.+..-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4455566777788888887777777664 556777777777788777766666666555
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.57 E-value=11 Score=31.46 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW---TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
....+|..++..+.+.|.++.|...+..+...+... .+...-.-+..+-..|+..+|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456678889999999999999999999988754222 3444455566777889999999999888763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.23 Score=35.33 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=59.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC
Q 018882 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++.... .-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence 45667777788888888888888766566677888888888888777777777662221 22235677778888
Q ss_pred CHHHHHHHHHHHHh
Q 018882 288 CFAEMKGVLEVMQQ 301 (349)
Q Consensus 288 ~~~~a~~~~~~m~~ 301 (349)
.++++.-++.++..
T Consensus 85 l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN 98 (143)
T ss_dssp SHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHccc
Confidence 88888887776543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.07 E-value=7.8 Score=28.99 Aligned_cols=55 Identities=13% Similarity=-0.021 Sum_probs=24.5
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+.....|.++.|...++...+.+. .......-...+...|+-++|+.-|+.....
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 334444555555555444443332 2222333344445555555555555544444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.96 E-value=5.7 Score=35.23 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=46.1
Q ss_pred ccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018882 110 RAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189 (349)
Q Consensus 110 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 189 (349)
+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4455555555544432 233455566666666666666655554432 2334444455555554444
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 018882 190 VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
+-....+.|.. +.. .-++...|+++++.+++.
T Consensus 714 la~~~~~~g~~-N~A-----F~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGKN-NLA-----FLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhccc-chH-----HHHHHHcCCHHHHHHHHH
Confidence 44444444322 211 112334555555555554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.87 E-value=4.4 Score=30.91 Aligned_cols=76 Identities=17% Similarity=0.119 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCchHHHHHHHHH
Q 018882 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ--GIRPNTVTYNTLIDA 107 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 107 (349)
.+..++.+.+.+++.+++...+.-.+.. +.|...-..+++.++-.|++++|..-++-.-.. ...+-..+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3444556666777777777766555542 445555666777777777777776655554443 122334455555544
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.73 E-value=1.3 Score=23.86 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=13.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=88.64 E-value=9.1 Score=30.47 Aligned_cols=87 Identities=10% Similarity=0.147 Sum_probs=47.0
Q ss_pred HHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG----- 179 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 179 (349)
|.+++..++|.+++...-+..+..-+....+...-|-.|.+.+++..+.++-.......-.-+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 566666677777666555554432222233344455556677777666666665554322223333555555443
Q ss_pred hcCCHHHHHHHH
Q 018882 180 KAGHFEKMSAVM 191 (349)
Q Consensus 180 ~~~~~~~a~~~~ 191 (349)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 356666666665
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.58 E-value=0.2 Score=35.58 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=41.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 018882 140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL 219 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (349)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 4444555556666666666665544445566666666666665555555554411 112223344444555555
Q ss_pred HHHHHHHHH
Q 018882 220 KQMEYLFRL 228 (349)
Q Consensus 220 ~~a~~~~~~ 228 (349)
+++..++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555555444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.49 E-value=8.7 Score=28.77 Aligned_cols=93 Identities=13% Similarity=0.004 Sum_probs=54.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 321 (349)
+...+...++++.|..-++......... ....--.|.+.....|.+++|+.+++...+.+. .......-.+.+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 3455667777777777777655432111 112223355666677777777777776665432 223333444567777
Q ss_pred CchhhhHHHHHHHHHHh
Q 018882 322 GMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 322 g~~~~a~~~~~~~~~~~ 338 (349)
|+.++|+..|+...+..
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 77777777777766664
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.88 E-value=0.42 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=12.1
Q ss_pred HHHHHHcCCChhHHHHHHHHhhcC
Q 018882 33 LLSAYGRSGLFDKAFSLLEHMKNT 56 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~ 56 (349)
+..++.+.|++++|.+.|+.+...
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344444455555555555555443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.63 E-value=23 Score=32.56 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=35.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhc-
Q 018882 174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER-IKPSCVTLCSLVRAYGHA- 251 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~- 251 (349)
....+.-.|+++.|++.+-. ......+.+++...+..+.-.+-.+... ..+.... -.|...-+..+|..|.+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34455667888888888766 1122334555544444332221111111 2222110 011124566677666653
Q ss_pred --CChhhHHHHHHHHhhC
Q 018882 252 --GKPEKLGSVLRFIDNS 267 (349)
Q Consensus 252 --~~~~~a~~~~~~~~~~ 267 (349)
.++..|.+.+-.+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 4566666666555443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.56 E-value=1.3 Score=21.54 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=13.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555556666666666655544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=14 Score=29.94 Aligned_cols=235 Identities=12% Similarity=-0.001 Sum_probs=130.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH----HHHHHHHHHHhccCCCcchhh
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF----AEMELTLVKMLSEDCEPDVWT 135 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 135 (349)
.+|.......+.++...|. ..+...+..+... +|...-...+.++...|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3556666666666666664 3333344444433 3555555566666666652 4566666666433 344444
Q ss_pred HHHHHHHHHccCCH-----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 018882 136 MNCTLRAFGNSGQI-----DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 136 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..+...+-.+.+. ++...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 44555555444321 122233322222 3355666667777777776 4455555555542 3444555555
Q ss_pred HHHHhcC-ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCH
Q 018882 211 DAFGRAG-DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF 289 (349)
Q Consensus 211 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 289 (349)
.++.+.+ +.+.+...+..+.. .++..+-...+.++.+.++.. +...+-...+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKR-VLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChh-HHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5555543 23456666665553 456667777778888888754 444444444432 2 234577778888885
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018882 290 AEMKGVLEVMQQRGCKPDKVTYRTMVRAYS 319 (349)
Q Consensus 290 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 319 (349)
+|...+..+.+. .||...-...+.+|.
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 577778877764 346666666665554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.43 E-value=2.2 Score=20.98 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+|..+...|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677788888888888888888887664
|
... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.15 E-value=7.1 Score=29.83 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=22.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHH
Q 018882 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122 (349)
Q Consensus 70 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 122 (349)
++.+.+.+..++++...++-.+.. +.|..+-..++..++-.|++++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 344444444444444444433331 2233344444444444555554444333
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=87.13 E-value=1.1 Score=20.73 Aligned_cols=18 Identities=22% Similarity=0.004 Sum_probs=7.9
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 018882 279 LVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~ 296 (349)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=87.01 E-value=14 Score=29.63 Aligned_cols=85 Identities=6% Similarity=-0.045 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-CCCchHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhcCCCCC
Q 018882 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV-----MQQRGCKPD 307 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~~~~p~ 307 (349)
-.++..+...+++.++..+++....++++..... +...|...|..+|+.....|+..-..++.++ +.+.|+..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~ 277 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVT 277 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCC
Confidence 3555566666666666666766666666665443 4445666666677776777766666555543 233445555
Q ss_pred HHHHHHHHHHH
Q 018882 308 KVTYRTMVRAY 318 (349)
Q Consensus 308 ~~~~~~l~~~~ 318 (349)
...-..+-+.+
T Consensus 278 ~~L~~~L~~LF 288 (292)
T PF13929_consen 278 DELRSQLSELF 288 (292)
T ss_pred HHHHHHHHHHH
Confidence 55444444433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.87 E-value=18 Score=32.37 Aligned_cols=101 Identities=21% Similarity=0.136 Sum_probs=68.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
..+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 346677777777655432 566788888888888888888888877543 44566667777777765
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 299 (349)
..+-....+.|. .| .-.-+|...|+++++.+++..-
T Consensus 712 ~~la~~~~~~g~-~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGK-NN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcc-cc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 555555665553 22 2334566788888888877543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.84 E-value=52 Score=34.96 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=73.8
Q ss_pred CCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 5 CKQPEKAHELFQAMVDEGC--DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
++.+.+|+..++.-..... .....-+..+...|+..++++...-+...-.. .|+. + .-+......|+++.|
T Consensus 1396 c~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl--~-~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1396 CKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSL--Y-QQILEHEASGNWADA 1468 (2382)
T ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccH--H-HHHHHHHhhccHHHH
Confidence 4555666666665211000 01122233333467777777766666553111 1222 2 223345566788888
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhh-HHHHHHHHHccCCHHHHHHHHH
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWT-MNCTLRAFGNSGQIDTMEKCYE 157 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~ 157 (349)
...|+.+.+.+ ++...+++.++......+.++.++...+-..... .+.... ++.-..+--+.++++.......
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 88888887764 3346667777766666677766665444443322 222222 2223334456666666555543
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.43 E-value=11 Score=25.98 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=20.2
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 261 LRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
++.+...++.|++.....-++++-+.+++..|.++|+-++.
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33334444445555555555555555555555555554443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.12 E-value=3.1 Score=22.47 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=4.6
Q ss_pred ccCCHHHHHHHHH
Q 018882 145 NSGQIDTMEKCYE 157 (349)
Q Consensus 145 ~~~~~~~a~~~~~ 157 (349)
..|+.+.|.++++
T Consensus 11 e~Gd~e~Ar~lL~ 23 (44)
T TIGR03504 11 EMGDLEGARELLE 23 (44)
T ss_pred HcCChHHHHHHHH
Confidence 3333333333333
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.76 E-value=32 Score=30.74 Aligned_cols=122 Identities=13% Similarity=0.044 Sum_probs=73.0
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--chHHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LDTVFFNCL 279 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 279 (349)
+..+|+.-+..-...|+.+.+.-++++..-- +..-...|-..+.-....|+.+.|..++....+--.+ |....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567777777778888888888888776521 1122344555555555568888777777665543332 333333332
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCchhhhH
Q 018882 280 VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVT-YRTMVRAYSTNGMKNHAK 328 (349)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~ 328 (349)
+ .-..|+++.|..+++.+...- |+... -..-+....+.|..+.+.
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 2 234578888999998888763 44332 222334456667777666
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.23 E-value=2.6 Score=34.43 Aligned_cols=95 Identities=13% Similarity=0.003 Sum_probs=60.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
.-|.+.|.+++|+++|....... +-+..++..-..+|.+..++..|+.-.......+- .-...|+.-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence 45889999999999998876543 33788888888999999998888776666655331 12223333333333344555
Q ss_pred HHHHHHHHHHhcCCCCCHH
Q 018882 291 EMKGVLEVMQQRGCKPDKV 309 (349)
Q Consensus 291 ~a~~~~~~m~~~~~~p~~~ 309 (349)
+|.+=++...+. .|+..
T Consensus 183 EAKkD~E~vL~L--EP~~~ 199 (536)
T KOG4648|consen 183 EAKKDCETVLAL--EPKNI 199 (536)
T ss_pred HHHHhHHHHHhh--CcccH
Confidence 555555555443 55533
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=83.16 E-value=14 Score=26.25 Aligned_cols=49 Identities=8% Similarity=0.086 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHhccCc-HHHHHHHHHHHhccCCCcchhhHHHHHHHHHc
Q 018882 97 NTVTYNTLIDAYGRAKM-FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN 145 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (349)
+...|+.++.+..+... ---+..+|.-+.+.+.+++..-|..++.++.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 33445555554444333 22233444444444444445555555554443
|
|
| >PF13934 ELYS: Nuclear pore complex assembly | Back alignment and domain information |
|---|
Probab=82.64 E-value=21 Score=27.82 Aligned_cols=103 Identities=13% Similarity=0.052 Sum_probs=59.9
Q ss_pred HHHHHHHH--HcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018882 30 FTALLSAY--GRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDA 107 (349)
Q Consensus 30 ~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (349)
|...++++ ...+++++|.+.+-.- .+.|+-. .-++.++...|+.+.|..+++...-.. .+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p----s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP----SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC----CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH
Confidence 45555553 4567788888877322 2223222 247777777899998888887654321 122333333444
Q ss_pred HhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Q 018882 108 YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144 (349)
Q Consensus 108 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (349)
..++.+.+|...-+...+.. ....+..++..+.
T Consensus 151 -La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 56688888888777766532 1334555555554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=82.58 E-value=17 Score=26.87 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=5.1
Q ss_pred CCCHHHHHHHHHH
Q 018882 305 KPDKVTYRTMVRA 317 (349)
Q Consensus 305 ~p~~~~~~~l~~~ 317 (349)
.|+..+|+.-+..
T Consensus 110 ~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 110 DPNNELYRKSLEM 122 (186)
T ss_dssp -TT-HHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 3444444444443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.54 E-value=34 Score=30.14 Aligned_cols=165 Identities=14% Similarity=0.142 Sum_probs=87.6
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 018882 132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVID 211 (349)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 211 (349)
|.....+++..+..+-.+.-++.+..+|...| -+...|..++.+|..+ ..+.-..+++++.+..+. |++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445556666666666666666666666654 2555566666666666 455566666666665544 4444444444
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC-----cHHHHHHHHHHHHhcCChhhHHHHHHHHhh-CCCCchHHHHHHHHHHHHh
Q 018882 212 AFGRAGDLKQMEYLFRLMRSERIKP-----SCVTLCSLVRAYGHAGKPEKLGSVLRFIDN-SDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 285 (349)
.|-+ ++.+.+..+|..+...-++. -...|..+.... ..+.+....+...+.. .|...-...+..+-..|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 56666666666554332110 112333333211 2344555555444432 2333334455555566666
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 018882 286 LKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 286 ~g~~~~a~~~~~~m~~~~ 303 (349)
..++.+|++++..+.+.+
T Consensus 218 ~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 218 NENWTEAIRILKHILEHD 235 (711)
T ss_pred ccCHHHHHHHHHHHhhhc
Confidence 777777777776665553
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.34 E-value=13 Score=25.58 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=13.3
Q ss_pred CCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018882 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
++.|+......-+++|.+.+++..|.++|+-+
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444444444444444444444444444333
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=82.24 E-value=24 Score=28.25 Aligned_cols=91 Identities=11% Similarity=0.097 Sum_probs=63.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH-
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG- 214 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 214 (349)
...=|.+++..+++.++....-+--+.--+....+...-|-.|.+.+++..+.++-..-....-.-+...|..++..|.
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3445788899999999887765544432233445556666778999999999988877765433334555777776665
Q ss_pred ----hcCChHHHHHHH
Q 018882 215 ----RAGDLKQMEYLF 226 (349)
Q Consensus 215 ----~~~~~~~a~~~~ 226 (349)
-.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 469999999887
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.74 E-value=14 Score=30.37 Aligned_cols=92 Identities=12% Similarity=-0.051 Sum_probs=63.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
.+-|.+.|.+++|+..|.......+. +++++..-..+|.+...+..|+.=....+..+ ..-...|+.-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 35689999999999999887765422 88888888999999999888877666655432 12233444444444455666
Q ss_pred hhHHHHHHHHhhCC
Q 018882 255 EKLGSVLRFIDNSD 268 (349)
Q Consensus 255 ~~a~~~~~~~~~~~ 268 (349)
.+|.+-++...+..
T Consensus 182 ~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 182 MEAKKDCETVLALE 195 (536)
T ss_pred HHHHHhHHHHHhhC
Confidence 66666666666543
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.73 E-value=10 Score=23.58 Aligned_cols=46 Identities=7% Similarity=-0.067 Sum_probs=24.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCchhhhHHH
Q 018882 285 RLKCFAEMKGVLEVMQQRGCKPD--KVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
..++.++|+..|....+.-..|. -.++..++.+|...|++.++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666665555422221 23455556666666666555554
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.51 E-value=28 Score=28.55 Aligned_cols=112 Identities=11% Similarity=-0.018 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCcHHHHHHHHHHH-HhcCChhhHHHHHHHHhhCCCCchH----H
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRS----ERIKPSCVTLCSLVRAY-GHAGKPEKLGSVLRFIDNSDIMLDT----V 274 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~----~ 274 (349)
..+-.....||+.|+.+.|.+.++...+ .|.+.|...+..-+..+ ....-..+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4445555566666666666666554432 24444443332222111 1111123333333444444443332 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRA 317 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 317 (349)
+|..+ .++...++.+|..+|-+....=-.-...+|..++.-
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Y 225 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRY 225 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHcccccceecccHHHHHHH
Confidence 33322 233445566666665554433111223344444443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=81.13 E-value=3.1 Score=19.40 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=15.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKN 55 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 55 (349)
+|..+...+...|+++.|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555566666666666655544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=80.98 E-value=14 Score=24.61 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=42.5
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHH
Q 018882 41 GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120 (349)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 120 (349)
...++|..+.+.+...++ -...+--+.+..+.+.|+++.| +..- .....||...|-.|- -.+.|-.+++...
T Consensus 20 HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A---Ll~~-~~~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA---LLLP-QCHCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH---HHHH-TTS--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH---HHhc-ccCCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 346677777777666531 2222333444556677777777 1111 122355666655443 3356666666666
Q ss_pred HHHHhccCCCcchhhH
Q 018882 121 LVKMLSEDCEPDVWTM 136 (349)
Q Consensus 121 ~~~~~~~~~~~~~~~~ 136 (349)
+.++..+| .|....|
T Consensus 92 l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 92 LTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHCT-S-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 66666555 3433333
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH | Back alignment and domain information |
|---|
Probab=80.84 E-value=16 Score=27.07 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=10.5
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 018882 72 SCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~ 91 (349)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555544
|
Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.39 E-value=21 Score=26.44 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHcCCC-------hhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhc
Q 018882 8 PEKAHELFQAMVDEGCDANTQSFTALLSA---YGRSGL-------FDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKA 76 (349)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~-------~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~ 76 (349)
++.|.+..+.-...+ |.|...++.-..+ +++..+ +++|+.-|++.... .|+ ..++-.+..++...
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I---~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI---NPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHH
Confidence 455666666544443 4455544433333 322222 33445555555544 344 35555555555443
Q ss_pred C----C-------hhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 018882 77 F----A-------FDKVQALLSDMSTQGIRPNTVTYNTLIDAY 108 (349)
Q Consensus 77 ~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (349)
+ + +++|...|++.... .|+..+|+.-+...
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 2 2 34444455544443 56777777666655
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B | Back alignment and domain information |
|---|
Probab=80.14 E-value=5.9 Score=23.30 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 307 DKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
|..-.-.+|.+|...|++++|.++++.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444455566666666666666555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 91.4 bits (225), Expect = 3e-20
Identities = 25/202 (12%), Positives = 52/202 (25%), Gaps = 3/202 (1%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKN--TPDCQP 61
+ Q A + A LL
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEM-ELT 120
++ Y+ ++ + AF ++ +L + G+ P+ ++Y + GR A E
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
L +M E + L + + + K F P + LL
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 181 AGHFEKMSAVMEYMQKYHYSWT 202
+ ++ +
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.6 bits (202), Expect = 2e-17
Identities = 21/205 (10%), Positives = 59/205 (28%), Gaps = 4/205 (1%)
Query: 148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEY---MQKYHYSWTIV 204
+D + + A + ++ ++ T+
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK-LGSVLRF 263
YN V+ + R G K++ Y+ +++ + P ++ + ++ G + + L
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 264 IDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323
+ + L +F L+ R + V P V ++R
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 324 KNHAKEFQDLVEKMDETCLAMKRPD 348
+ + ++ + +
Sbjct: 287 RVSYPKLHLPLKTLQCLFEKQLHME 311
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 3e-09
Identities = 26/180 (14%), Positives = 54/180 (30%), Gaps = 4/180 (2%)
Query: 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216
+ + A P LL + A + S
Sbjct: 81 DCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLT 140
Query: 217 GDLKQMEYLFRLMRSERIKPSCVTLC---SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT 273
L +L + +R K +TL +++ + G ++L VL + ++ + D
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200
Query: 274 VFFNCLVDAYGRLKCFAEM-KGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQD 332
+ + + GR A + LE M Q G K + ++ + + +
Sbjct: 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.4 bits (129), Expect = 3e-08
Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 2/135 (1%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFS-LLEHMKNTPDC 59
+ ++ + + D G + S+ A L GR LE M
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK 233
Query: 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
+ T +L +A V + S P V + L+
Sbjct: 234 LQALFTAVLL-SEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 292
Query: 120 TLVKMLSEDCEPDVW 134
+ + + C +
Sbjct: 293 LHLPLKTLQCLFEKQ 307
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 3e-06
Identities = 45/321 (14%), Positives = 107/321 (33%), Gaps = 70/321 (21%)
Query: 8 PEKAHELFQAMVD--------EGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPD- 58
P++ L +D E N + LS + T D
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPR----RLSIIAE---------SIRDGLATWDN 346
Query: 59 -CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV--TYNTLIDAYGRAKMFA 115
+ + + +I+S L + + + +S + P + L + +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPPSAHIPTILL-SLIWFDVIKS 402
Query: 116 EMELTLVKMLSE---DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFN 172
++ + + K+ + +P T ++ S ++ K + +++
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKEST--ISI----PSIYLELKVKLENE-------YALH--R 447
Query: 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYL-FRLMRS 231
++D Y F+ + Y+ +Y YS + +++ L +M +L FR +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSH--IGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 232 ERIKPSCVTLCSL---------VRAYG-----HAGKPEKL-GSVLRFIDNSDIMLDTVFF 276
+I+ + ++ Y + K E+L ++L F+ + L +
Sbjct: 506 -KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 277 NCLVDAYGRLKCFAEMKGVLE 297
L+ R+ AE + + E
Sbjct: 565 TDLL----RIALMAEDEAIFE 581
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-05
Identities = 53/434 (12%), Positives = 114/434 (26%), Gaps = 133/434 (30%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYG----RSGLFDKAFSLLEHMKNTP 57
L C PE E+ Q + ++T+ R L K
Sbjct: 189 LKNCNSPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 58 DCQPDVNTYSILI------KSCLKAFAFDKVQALL--SDMS-TQGIRPNTVTYNTLIDAY 108
+C +L+ AF + LL T + T T+ +L
Sbjct: 245 NC--------LLVLLNVQNAKAWNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDH-- 293
Query: 109 GRAKMFAEME-LTL-----------------------VKMLSEDC--EPDVW-------- 134
+ E +L + +++E W
Sbjct: 294 -HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 135 -TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP-----SINTFNIL---LDSYGK---AG 182
+ + + N + K +++ + P +++ +
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRL---SVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
K S V + ++ S +I ++ + + + R + P
Sbjct: 410 KLHKYSLVEKQPKESTIS----IPSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSD 462
Query: 243 SLVR-----------AYGHAGKPEKLGSV---------LRFIDNSDIMLDTVFFNC---L 279
L+ + H E + RF++ I D+ +N +
Sbjct: 463 DLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSI 520
Query: 280 VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAK-----EFQDLV 334
++ +LK + + C D Y +V A + + ++ DL+
Sbjct: 521 LNTLQQLKFY----------KPYICDNDP-KYERLVNAILDF-LPKIEENLICSKYTDLL 568
Query: 335 EKMDETCLAMKRPD 348
+A+ D
Sbjct: 569 R------IALMAED 576
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.88 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.88 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.86 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.82 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.79 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.78 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.77 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.75 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.75 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.75 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.74 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.74 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.73 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.72 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.72 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.72 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.72 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.72 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.72 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.72 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.68 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.67 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.66 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.66 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.65 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.65 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.65 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.64 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.63 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.61 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.6 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.6 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.6 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.56 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.56 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.53 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.53 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.52 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.46 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.45 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.45 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.45 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.44 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.41 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.37 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.33 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.33 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.32 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.31 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.29 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.29 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.29 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.27 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.26 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.25 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.24 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.22 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.22 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.21 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.21 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.19 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.18 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.16 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.16 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.16 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.14 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.14 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.14 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.14 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.13 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.13 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.13 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.13 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.13 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.13 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.03 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.0 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.0 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.99 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.98 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.96 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.94 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.94 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.94 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.92 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.92 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.9 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.89 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.88 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.88 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.88 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.87 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.86 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.85 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.85 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.84 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.84 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.84 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.83 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.83 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.81 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.81 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.8 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.8 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.79 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.79 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.75 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.74 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.68 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.68 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.67 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.67 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.66 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.63 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.63 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.63 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.62 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.6 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.59 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.59 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.59 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.58 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.58 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.57 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.57 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.57 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.56 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.53 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.52 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.51 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.5 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.48 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.48 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.47 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.43 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.42 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.38 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.34 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.34 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.34 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.34 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.34 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.33 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.31 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.3 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.29 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.25 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.24 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.23 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.17 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.13 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.12 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.1 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.09 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.05 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.03 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.02 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.98 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.94 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.91 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.85 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.83 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.8 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.65 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.64 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.64 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.48 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.36 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.24 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.18 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.13 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.12 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.07 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.04 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.97 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.96 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.9 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.86 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.8 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.78 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.61 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.56 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.54 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.54 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.45 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.44 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.4 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.27 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.09 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.8 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.55 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.07 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.97 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.94 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.42 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.31 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.23 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.12 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.09 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.0 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.82 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.8 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.56 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 92.27 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.09 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.74 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.14 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.13 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.05 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.97 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.8 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.66 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.59 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.41 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.07 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 85.29 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.67 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.52 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.51 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 84.23 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.08 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.03 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.36 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=250.28 Aligned_cols=186 Identities=13% Similarity=0.124 Sum_probs=117.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhcCCCCchhhH
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH---------FEKMSAVMEYMQKYHYSWTIVTY 206 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 206 (349)
++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. .+.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555555555555555555555555555555555555555544332 45566666666666666666666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc
Q 018882 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL 286 (349)
Q Consensus 207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 286 (349)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 287 KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 287 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 321 (349)
|+.++|.++|++|.+.|..|+..||+.++..|...
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=247.36 Aligned_cols=202 Identities=13% Similarity=0.156 Sum_probs=111.9
Q ss_pred HHHHHHHHcCCCCCh-hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC---------hhHH
Q 018882 13 ELFQAMVDEGCDANT-QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA---------FDKV 82 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a 82 (349)
.+.+.+.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+. |+.||..+|+++|.+|++.+. ++.|
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 333444444443333 23555566666666666666666666654 456666666666666655433 3455
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
.++|++|...|+.||..||+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 55666666666666666666666666666666666666666655555566666666666666666666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
|+.||..+|++||.+|++.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666555555566666555555544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=244.25 Aligned_cols=236 Identities=10% Similarity=-0.041 Sum_probs=105.3
Q ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD 176 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 176 (349)
+..+++.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 33444444444455555555555555444332 1122223333333333333333333333332221 223444445555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018882 177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (349)
.|.+.|++++|.++|+++.+.... +..+|+.++.++.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 555555555555555554443211 34455555555555555555555555544432 2344444445555555555555
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhcCchhhhHHH
Q 018882 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKPD--KVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
|.++|+.+.+... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++
T Consensus 460 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555554444322 23444445555555555555555555544443 33344 34445555555555555555554
Q ss_pred HHHHHHH
Q 018882 331 QDLVEKM 337 (349)
Q Consensus 331 ~~~~~~~ 337 (349)
++.+.+.
T Consensus 539 ~~~~~~~ 545 (597)
T 2xpi_A 539 LNQGLLL 545 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=245.28 Aligned_cols=329 Identities=10% Similarity=0.019 Sum_probs=291.3
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHH--------------------------------------HHHHHcCCCh
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTAL--------------------------------------LSAYGRSGLF 43 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~~ 43 (349)
|.+.|++++|+++|+++.+.+ +.+...+..+ +..|.+.|++
T Consensus 210 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 210 YTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence 567899999999999999875 2334444433 4456678899
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHH
Q 018882 44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123 (349)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 123 (349)
++|.++|+++.+. +++..+++.++.++.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..++++
T Consensus 289 ~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 289 RRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999865 5899999999999999999999999999999875 34788999999999999999999999999
Q ss_pred HhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 018882 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTI 203 (349)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 203 (349)
+.+.. +.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+.
T Consensus 365 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 441 (597)
T 2xpi_A 365 LVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTH 441 (597)
T ss_dssp HHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCS
T ss_pred HHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cch
Confidence 98654 5678899999999999999999999999998864 44788999999999999999999999999988754 488
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCch--HHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLD--TVFFN 277 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~ 277 (349)
.+|..++.+|.+.|++++|.++|+.+.+.. +.+..+|..++..+.+.|++++|..+++.+.+. +..|+ ..+|.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 999999999999999999999999998765 557899999999999999999999999998765 55677 78999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 278 CLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.+.++.+.++.+.
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999875 347899999999999999999999999999888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-28 Score=205.02 Aligned_cols=325 Identities=10% Similarity=0.038 Sum_probs=214.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 84 (349)
.|++++|...++...+.. +.+..+|..+..++.+.|++++|++.|+++.+.. +.+..+|..+..++.+.|++++|.+
T Consensus 46 ~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHH
Confidence 344455555554444432 3344555555555555555555555555555432 2334445555555555555555555
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 018882 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI 164 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 164 (349)
.++++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+..
T Consensus 123 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 199 (388)
T 1w3b_A 123 AYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD- 199 (388)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 555555542 1233344455555556666666666666665543 2334556666666666666666666666666653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018882 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
+.+...+..+...+...|++++|...+++.....+. +..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 200 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 277 (388)
T 1w3b_A 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNL 277 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 234556666666666677777777777666655432 56778888888888888888888888887764 3456778888
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch
Q 018882 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK 324 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 324 (349)
...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..++.+.|++
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 888888888888888888887764 3477788888888888999999999888888753 33577888888889999999
Q ss_pred hhhHHHHHHHHHHhh
Q 018882 325 NHAKEFQDLVEKMDE 339 (349)
Q Consensus 325 ~~a~~~~~~~~~~~~ 339 (349)
++|.+.++.+.+..+
T Consensus 356 ~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 356 QEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhhCC
Confidence 999988888776544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-28 Score=201.54 Aligned_cols=326 Identities=11% Similarity=-0.025 Sum_probs=286.2
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++++|
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHH
Confidence 35799999999999998874 4566778888888999999999999999988763 67889999999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
...|+++.+.. +.+..+|..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+.
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999998873 3356689999999999999999999999998764 334566778888899999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH
Q 018882 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (349)
. +.+..+|..+...+...|++++|...|+++.+.++. +...|..+...+...|++++|...+++..... +.+..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 4 446788999999999999999999999999987644 67889999999999999999999999988764 44678899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018882 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
.+...+...|++++|...++.+.+..+ .+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 999999999999999999999998754 367789999999999999999999999999874 457889999999999999
Q ss_pred chhhhHHHHHHHHHHh
Q 018882 323 MKNHAKEFQDLVEKMD 338 (349)
Q Consensus 323 ~~~~a~~~~~~~~~~~ 338 (349)
++++|.+.++.+.+..
T Consensus 320 ~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVF 335 (388)
T ss_dssp CHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999998876654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-25 Score=189.49 Aligned_cols=322 Identities=10% Similarity=-0.017 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 018882 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSD 88 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 88 (349)
..+...+..+.... +.+...+..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455555555542 4567889999999999999999999999988753 56788899999999999999999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcch---hhHHHH------------HHHHHccCCHHHHH
Q 018882 89 MSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV---WTMNCT------------LRAFGNSGQIDTME 153 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~ 153 (349)
+.+.+ +.+..++..+..+|...|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|.
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98875 3467888899999999999999999999998764 2333 455544 44488899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
..++++.+.. +.+..++..+..++...|++++|...|+++.+... .+..++..+...+...|++++|...++.+....
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998874 45788899999999999999999999999887653 378899999999999999999999999988653
Q ss_pred CCCcHHHHHHH------------HHHHHhcCChhhHHHHHHHHhhCCCC-ch--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 234 IKPSCVTLCSL------------VRAYGHAGKPEKLGSVLRFIDNSDIM-LD--TVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 234 ~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
+.+...+..+ ...+...|++++|...++.+.+.... +. ...+..+...+.+.|++++|...+++
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3344444444 78889999999999999998875432 11 45788889999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 299 MQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 299 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+.... +.+...|..+..+|...|++++|.+.++.+.++.+
T Consensus 321 a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 321 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 88763 23678899999999999999999999998877654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-24 Score=184.45 Aligned_cols=302 Identities=13% Similarity=0.032 Sum_probs=256.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
|.+.|++++|+..|+.+.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..++.+.|++++
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHH
Confidence 456899999999999999873 5678899999999999999999999999998864 5678899999999999999999
Q ss_pred HHHHHHHHHhcCCCCch---HHHHHH------------HHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc
Q 018882 82 VQALLSDMSTQGIRPNT---VTYNTL------------IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS 146 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (349)
|...|+++.+.. +.+. ..+..+ ...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 113 A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 113 AEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC
Confidence 999999999864 2234 555555 444888999999999999998765 55778899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH------------HHHHH
Q 018882 147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV------------IDAFG 214 (349)
Q Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~ 214 (349)
|++++|.++++++.+.. +.+..++..+...+...|++++|...|+++...... +...+..+ ...+.
T Consensus 191 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELI 268 (450)
T ss_dssp TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 457889999999999999999999999999876533 44555544 78899
Q ss_pred hcCChHHHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCH
Q 018882 215 RAGDLKQMEYLFRLMRSERIKPS-----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF 289 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 289 (349)
..|++++|...++.+.+.. |+ ...+..+...+.+.|++++|...++.+.+... .+..+|..+..+|...|++
T Consensus 269 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~ 345 (450)
T 2y4t_A 269 RDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMY 345 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCH
Confidence 9999999999999998753 33 34788889999999999999999999887643 4688999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC-CHHHHHHHH
Q 018882 290 AEMKGVLEVMQQRGCKP-DKVTYRTMV 315 (349)
Q Consensus 290 ~~a~~~~~~m~~~~~~p-~~~~~~~l~ 315 (349)
++|...++++.+. .| +...+..+.
T Consensus 346 ~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 346 DEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 9999999999986 34 455565555
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-24 Score=185.46 Aligned_cols=329 Identities=9% Similarity=-0.071 Sum_probs=272.9
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|++.|+++.+.. +.+..++..+..++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHH
Confidence 356899999999999999975 789999999999999999999999999998864 5677899999999999999999
Q ss_pred HHHHHHHHHhcCCCC-----------------------------------------------------------------
Q 018882 82 VQALLSDMSTQGIRP----------------------------------------------------------------- 96 (349)
Q Consensus 82 a~~~~~~~~~~~~~~----------------------------------------------------------------- 96 (349)
|...|+++...+...
T Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 999999987764210
Q ss_pred -------------chHHHHHHHHHHhc---cCcHHHHHHHHHHHhc-----cCC--------CcchhhHHHHHHHHHccC
Q 018882 97 -------------NTVTYNTLIDAYGR---AKMFAEMELTLVKMLS-----EDC--------EPDVWTMNCTLRAFGNSG 147 (349)
Q Consensus 97 -------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~ 147 (349)
+...+..+...+.. .|++++|...++++.+ ... +.+...+..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 12233333333343 8999999999999887 311 234567888889999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 018882 148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
++++|...++++.+.... ...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|...++
T Consensus 252 ~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999887533 888899999999999999999999999887543 67889999999999999999999999
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C
Q 018882 228 LMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK-P 306 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p 306 (349)
.+.+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++...... +
T Consensus 329 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 329 KAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 998765 44667888899999999999999999999887643 36778889999999999999999999998775321 1
Q ss_pred C----HHHHHHHHHHHHh---cCchhhhHHHHHHHHHHhh
Q 018882 307 D----KVTYRTMVRAYST---NGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 307 ~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~ 339 (349)
+ ...+..+..++.. .|++++|.+.++.+.+..+
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 1 3388889999999 9999999999998877654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-22 Score=164.01 Aligned_cols=291 Identities=12% Similarity=0.011 Sum_probs=141.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
+.|++++|+..|+++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+...+..+..++...|++++|.
T Consensus 15 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 91 (359)
T 3ieg_A 15 AAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAE 91 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHH
Confidence 3455555555555555542 3344555555555555555555555555555432 234455555555555555555555
Q ss_pred HHHHHHHhcCCC--CchHHHHHH------------HHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCH
Q 018882 84 ALLSDMSTQGIR--PNTVTYNTL------------IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQI 149 (349)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 149 (349)
..++++.+.... .+...+..+ ...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 92 DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEP 170 (359)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCH
Confidence 555555544210 123333333 344455555555555555555443 23344455555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH------------HHHHHHhcC
Q 018882 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI------------VIDAFGRAG 217 (349)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~~ 217 (349)
++|...++++.+.. +.+..++..+...+...|++++|...++...+.... +...+.. +...+...|
T Consensus 171 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (359)
T 3ieg_A 171 RKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDG 248 (359)
T ss_dssp HHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555555555442 234445555555555555555555555555443321 2222221 133344555
Q ss_pred ChHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 018882 218 DLKQMEYLFRLMRSERIKPSC----VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 293 (349)
++++|...++.+.+... .+. ..+..+...+...|++++|...++.+.+... .+..++..+...|...|++++|.
T Consensus 249 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 249 RYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp CHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555544321 111 1123344455555555555555555544321 24445555555555555555555
Q ss_pred HHHHHHHhc
Q 018882 294 GVLEVMQQR 302 (349)
Q Consensus 294 ~~~~~m~~~ 302 (349)
..|++..+.
T Consensus 327 ~~~~~a~~~ 335 (359)
T 3ieg_A 327 QDYEAAQEH 335 (359)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 555555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-23 Score=179.94 Aligned_cols=330 Identities=9% Similarity=-0.031 Sum_probs=274.8
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-------------------
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD------------------- 62 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------- 62 (349)
+.+.|++++|++.|+++.+.+ +.+..+|..+..++...|++++|...|+++....+ ++
T Consensus 49 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 125 (514)
T 2gw1_A 49 YVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD--FNDASIEPMLERNLNKQAMSK 125 (514)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS--CCGGGTHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHHHHHH
Confidence 346799999999999999875 55678999999999999999999999999876532 11
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHh---cCCh
Q 018882 63 ------------------------------------------------------------VNTYSILIKSCLK---AFAF 79 (349)
Q Consensus 63 ------------------------------------------------------------~~~~~~ll~~~~~---~~~~ 79 (349)
...+......+.. .|++
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
T 2gw1_A 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205 (514)
T ss_dssp HTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH
Confidence 2233333333443 7999
Q ss_pred hHHHHHHHHHHh-----cCC--------CCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc
Q 018882 80 DKVQALLSDMST-----QGI--------RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS 146 (349)
Q Consensus 80 ~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (349)
++|...++++.+ ... +.+..++..+..++...|++++|...++++.+.... ...+..+...+...
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADR 283 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHC
Confidence 999999999987 311 224567888899999999999999999999887533 88889999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 018882 147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF 226 (349)
Q Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 226 (349)
|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+...+...|++++|...+
T Consensus 284 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp SCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998874 446778999999999999999999999999887644 6788999999999999999999999
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-ch----HHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 018882 227 RLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM-LD----TVFFNCLVDAYGR---LKCFAEMKGVLEV 298 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~a~~~~~~ 298 (349)
+.+.+.. +.+...+..+...+...|++++|...++.+.+.... ++ ...+..+...+.. .|++++|...++.
T Consensus 362 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 362 SEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred HHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 9998754 445678899999999999999999999988764321 11 3488899999999 9999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 299 MQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 299 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+.... +.+..++..+..+|.+.|++++|.+.++...++.+.
T Consensus 441 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 441 ASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 98874 236788899999999999999999999998887654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-22 Score=163.78 Aligned_cols=307 Identities=9% Similarity=-0.024 Sum_probs=258.8
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
++..+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 45678889999999999999999999998764 5678899999999999999999999999999874 33678899999
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCC--cchhhHHHH------------HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCE--PDVWTMNCT------------LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF 171 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (349)
.++...|++++|...++++.+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 9999999999999999999876420 244444444 578899999999999999998875 4578889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH---------
Q 018882 172 NILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC--------- 242 (349)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 242 (349)
..+...+...|++++|...++.+.+..+ .+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHH
Confidence 9999999999999999999999988754 378899999999999999999999999998754 23333332
Q ss_pred ---HHHHHHHhcCChhhHHHHHHHHhhCCCCchH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018882 243 ---SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT----VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMV 315 (349)
Q Consensus 243 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 315 (349)
.+...+...|++++|...++.+.+.... +. ..+..+...+...|++++|...+++..+.. +.+..++..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 2366789999999999999998876533 22 345568899999999999999999999873 33788999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 316 RAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.++...|++++|.+.++...++.+.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999887654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-22 Score=175.85 Aligned_cols=330 Identities=9% Similarity=-0.004 Sum_probs=249.8
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+.+.|++++|++.|+++.+.. +.++.+|..+..++.+.|++++|++.|+++.+.. +.+..++..+..++...|++++
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHH
Confidence 346789999999999998874 5678889999999999999999999999988764 5677888888999999999888
Q ss_pred HHHHHHHHHhc---------------------------------------------------------------------
Q 018882 82 VQALLSDMSTQ--------------------------------------------------------------------- 92 (349)
Q Consensus 82 a~~~~~~~~~~--------------------------------------------------------------------- 92 (349)
|...|+.+...
T Consensus 112 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (537)
T 3fp2_A 112 AMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191 (537)
T ss_dssp HHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCS
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccccc
Confidence 88777432100
Q ss_pred --------------------------------------CCCCc--------hHHHHHHHHHHhccCcHHHHHHHHHHHhc
Q 018882 93 --------------------------------------GIRPN--------TVTYNTLIDAYGRAKMFAEMELTLVKMLS 126 (349)
Q Consensus 93 --------------------------------------~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 126 (349)
...|+ ..++..+...+...|++++|...++++.+
T Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~ 271 (537)
T 3fp2_A 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271 (537)
T ss_dssp SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 01111 12344455566677788888888888876
Q ss_pred cCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhH
Q 018882 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY 206 (349)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 206 (349)
.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +...+
T Consensus 272 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 347 (537)
T 3fp2_A 272 LH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPY 347 (537)
T ss_dssp HC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHH
T ss_pred cC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 53 446777778888888888888888888887764 346777888888888888888888888888776533 56778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-----CCchHHHHHHHHH
Q 018882 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-----IMLDTVFFNCLVD 281 (349)
Q Consensus 207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~ 281 (349)
..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+.. .......+.....
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 888888888888999988888887654 4456678888888888899998888888876532 1112233445556
Q ss_pred HHHhc----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 282 AYGRL----------KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 282 ~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.+... |++++|...|++..+... .+...+..+..+|.+.|++++|.+.++...++.++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 67777 899999999998887642 36788899999999999999999999998887654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-22 Score=161.98 Aligned_cols=295 Identities=9% Similarity=-0.054 Sum_probs=248.5
Q ss_pred CCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHH
Q 018882 23 CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN 102 (349)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 102 (349)
.+.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 35677888899999999999999999999998764 4566677778889999999999999999999874 44778899
Q ss_pred HHHHHHhccC-cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 103 TLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 103 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
.+...+...| ++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 9999999999 9999999999998765 4456788999999999999999999999999875 33566777899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCcHHHHHHHHHHHHhcCC
Q 018882 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER--------IKPSCVTLCSLVRAYGHAGK 253 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~ 253 (349)
|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.. .+....++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999887643 68889999999999999999999999887531 13345788999999999999
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCchh
Q 018882 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY-STNGMKN 325 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~ 325 (349)
+++|...++.+.+... .+...+..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999999987654 367889999999999999999999999988764 22677788888777 4555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-22 Score=163.89 Aligned_cols=296 Identities=10% Similarity=-0.067 Sum_probs=232.3
Q ss_pred HHcCCChhHHHH-HHHHhhcCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Q 018882 37 YGRSGLFDKAFS-LLEHMKNTPDCQP--DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM 113 (349)
Q Consensus 37 ~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (349)
+...|++++|++ .|++........| +...+..+...+.+.|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578899998 8887665432222 35667888899999999999999999999874 4477888999999999999
Q ss_pred HHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHH---------------HHHHH
Q 018882 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNI---------------LLDSY 178 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~ 178 (349)
+++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999998775 456788899999999999999999999999886422 2222221 23334
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018882 179 GKAGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
...|++++|...++++.+..+.. +..++..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998765332 57889999999999999999999999988764 45678899999999999999999
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHHhcCchhhh
Q 018882 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP----------DKVTYRTMVRAYSTNGMKNHA 327 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a 327 (349)
...++.+.+... .+..++..+...|.+.|++++|...|+++....... ...+|..+..+|...|+++.|
T Consensus 271 ~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 999999887653 467889999999999999999999999988753211 268899999999999999999
Q ss_pred HHHHHHHHHH
Q 018882 328 KEFQDLVEKM 337 (349)
Q Consensus 328 ~~~~~~~~~~ 337 (349)
..+++...+.
T Consensus 350 ~~~~~~~l~~ 359 (368)
T 1fch_A 350 GAADARDLST 359 (368)
T ss_dssp HHHHTTCHHH
T ss_pred HHhHHHHHHH
Confidence 9987754443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-21 Score=155.60 Aligned_cols=280 Identities=7% Similarity=-0.083 Sum_probs=238.4
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDK 81 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~ 81 (349)
...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+...+...| ++++
T Consensus 33 ~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 33 YYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhhhhHHH
Confidence 35699999999999999874 5567788888899999999999999999998864 557788999999999999 9999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|...+++..+.. +.+...|..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 110 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 110 ARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999998874 3467889999999999999999999999998775 34556777799999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH--------YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
.. +.+...+..+...+...|++++|...++++.+.. .+....++..+...+...|++++|...++...+..
T Consensus 188 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 188 IA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 74 4578889999999999999999999999887642 13346789999999999999999999999998765
Q ss_pred CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH-HhcCCHH
Q 018882 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY-GRLKCFA 290 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 290 (349)
+.+...+..+...+...|++++|...++.+.+... .+...+..+..++ ...|+.+
T Consensus 267 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 267 -PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred -ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchh
Confidence 45678899999999999999999999999988653 3677888888877 4556543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-21 Score=160.23 Aligned_cols=288 Identities=8% Similarity=-0.068 Sum_probs=230.8
Q ss_pred CCChHHHHH-HHHHHHHcCC-CC--ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChh
Q 018882 5 CKQPEKAHE-LFQAMVDEGC-DA--NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 5 ~g~~~~A~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 80 (349)
.|++++|.+ .|++..+... .| +...+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHH
Confidence 466777777 6665544321 11 35678889999999999999999999999874 567889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHH---------------HHHHHHc
Q 018882 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC---------------TLRAFGN 145 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~ 145 (349)
+|...++++.+.. +.+..++..+..++...|++++|...++++...... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 9999999999875 447889999999999999999999999999876422 2222211 2334448
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 018882 146 SGQIDTMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEY 224 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 224 (349)
.|++++|...++++.+..... +..++..+...+...|++++|...++++.+.... +...+..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999998874221 5788999999999999999999999999887533 67899999999999999999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc----------hHHHHHHHHHHHHhcCCHHHHHH
Q 018882 225 LFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML----------DTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
.++.+.+.. +.+...+..+..++...|++++|...++.+.+..... ...+|..+..+|...|++++|..
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999998764 4567889999999999999999999999887643211 26789999999999999999998
Q ss_pred HHHH
Q 018882 295 VLEV 298 (349)
Q Consensus 295 ~~~~ 298 (349)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-21 Score=160.70 Aligned_cols=268 Identities=9% Similarity=-0.094 Sum_probs=216.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018882 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLR 141 (349)
Q Consensus 62 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (349)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888899999999999999999998874 4478889999999999999999999999998765 456788999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchhhHHHHHH
Q 018882 142 AFGNSGQIDTMEKCYEKFQSAGIQ---------PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-WTIVTYNIVID 211 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 211 (349)
++...|++++|...++++.+.... .....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998875311 01223344578889999999999999999887533 16788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHH
Q 018882 212 AFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 291 (349)
.+...|++++|...++++.+.. +.+..++..+..++...|++++|...++.+.+... .+..++..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998764 55678999999999999999999999999987653 358889999999999999999
Q ss_pred HHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHhcCchhhhHHHHHH
Q 018882 292 MKGVLEVMQQRGCK-----------PDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 292 a~~~~~~m~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
|...|+++.+.... .+...|..+..++...|+.+.+.++.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999998875211 1367889999999999999888776554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-19 Score=158.49 Aligned_cols=307 Identities=9% Similarity=-0.010 Sum_probs=247.2
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
....|..+...+.+.|++++|++.|+++.... +.+...+..+..++.+.|++++|.+.++++.+.. +.+..++..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 35678888999999999999999999998864 5688999999999999999999999999999875 44788899999
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCC------------------------------------cchh---------------
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCE------------------------------------PDVW--------------- 134 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~------------------------------------~~~~--------------- 134 (349)
.++...|++++|...|+.+...... |+..
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999999998643211100 0000
Q ss_pred ---------------hHHHHHHHHHc--------cCCHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhcCCH
Q 018882 135 ---------------TMNCTLRAFGN--------SGQIDTMEKCYEKFQSAGIQPS-------INTFNILLDSYGKAGHF 184 (349)
Q Consensus 135 ---------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~ 184 (349)
....+...+.. .|++++|..+++++.+... .+ ..++..+...+...|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccH
Confidence 11111222211 1478889999999887642 23 23466777888899999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018882 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
++|...++.+.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999998865 458889999999999999999999999998765 456788999999999999999999999999
Q ss_pred hhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhh
Q 018882 265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 265 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+..+..
T Consensus 337 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 337 QSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 87654 356789999999999999999999999999874 3357788999999999999999999999998887643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-20 Score=154.82 Aligned_cols=267 Identities=7% Similarity=-0.065 Sum_probs=220.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+...+..+...+.+.|++++|++.|+++.... +.+..++..+..++...|++++|...|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 44568899999999999999999999998864 5678899999999999999999999999999874 44688999999
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcchh----------hHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVW----------TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNIL 174 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 174 (349)
.+|...|++++|...++++.+.. +.+.. .+..+...+...|++++|...++++.+.... ++..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999998753 11222 2334578899999999999999999987522 168899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
...+...|++++|...++++.+.... +..+|..+..++...|++++|...++++.+.. +.+..++..+..++...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999887643 78899999999999999999999999998764 45578899999999999999
Q ss_pred hhHHHHHHHHhhCCCC-----------chHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 255 EKLGSVLRFIDNSDIM-----------LDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
++|...++.+.+.... .+..+|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999988753211 1367899999999999999988877654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-19 Score=148.86 Aligned_cols=265 Identities=5% Similarity=-0.077 Sum_probs=161.3
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 45567778888889999999999999887753 4577788888888999999999999999988774 34677888888
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcchhhHHHH--------------HH-HHHccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT--------------LR-AFGNSGQIDTMEKCYEKFQSAGIQPSINT 170 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (349)
.++...|++++|.+.++++.... +.+...+..+ .. .+...|++++|.+.++++.+.. +.+..+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 88889999999999998888653 2222233222 11 2445555666666666655543 224555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 555555566666666666666555544322 34555555555555555555555555554432 2234445555555555
Q ss_pred cCChhhHHHHHHHHhhCCCCc-----------hHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 251 AGKPEKLGSVLRFIDNSDIML-----------DTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
.|++++|...++.+.+..... +...|..+..++.+.|++++|..+++
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555555555555444322111 24444445555555555555544443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-19 Score=148.48 Aligned_cols=274 Identities=5% Similarity=-0.079 Sum_probs=227.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018882 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLR 141 (349)
Q Consensus 62 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (349)
+...+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456777888999999999999999998874 3477888999999999999999999999998875 456778889999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCchhhH
Q 018882 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL--------------LD-SYGKAGHFEKMSAVMEYMQKYHYSWTIVTY 206 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 206 (349)
.+...|++++|.+.++++.+... .+...+..+ .. .+...|++++|...++++.+.... +...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 99999999999999999988642 233333333 22 367788999999999999887643 78899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc
Q 018882 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL 286 (349)
Q Consensus 207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 286 (349)
..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+.+... .+...+..+...|...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHh
Confidence 999999999999999999999998764 45678899999999999999999999999887653 3678899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhh
Q 018882 287 KCFAEMKGVLEVMQQRGCKP-----------DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 287 g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
|++++|...++++....... +...|..+..++...|+++.|..+++...+..+..
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 99999999999998764321 47789999999999999999999887665554443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-21 Score=156.26 Aligned_cols=284 Identities=13% Similarity=0.110 Sum_probs=135.7
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+-+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++
T Consensus 13 l~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHH
Confidence 456788999999999982 335999999999999999999999964 2567799999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 99988777764 4567889999999999999999887774 367779999999999999999999999976
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018882 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 47999999999999999999999988 27899999999999999999996655542 2333445
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCC------CHHHHHH
Q 018882 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--KCFAEMKGVLEVMQQRGCKP------DKVTYRT 313 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p------~~~~~~~ 313 (349)
..++..|.+.|++++|..+++...... +-....|+.+...|++- ++..+.++.|. .+.+++| +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHH
Confidence 578999999999999999999998776 45778888888888875 34444444443 1223333 4667888
Q ss_pred HHHHHHhcCchhhhHHH
Q 018882 314 MVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 314 l~~~~~~~g~~~~a~~~ 330 (349)
+.-.|.+.++++.|...
T Consensus 288 ~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhchHHHHHHH
Confidence 88889999999887763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-18 Score=138.33 Aligned_cols=251 Identities=12% Similarity=0.083 Sum_probs=179.2
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDV--NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK 112 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (349)
+-....|+++.|+..++..... .|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3455678888888888776544 3332 3445567788888888888765543 23566777777888888888
Q ss_pred cHHHHHHHHHHHhccCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 113 MFAEMELTLVKMLSEDCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVM 191 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 191 (349)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888877665434 445556666778888888888888776 456777888888888888888888888
Q ss_pred HHHHhcCCCCchhhH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018882 192 EYMQKYHYSWTIVTY---NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 192 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
+.+.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++.+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8887764 332211 122333445578888888888887763 5677788888888888888888888888877765
Q ss_pred CCchHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhc
Q 018882 269 IMLDTVFFNCLVDAYGRLKCFAE-MKGVLEVMQQR 302 (349)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 302 (349)
+ -++.++..++..+...|+.++ +.++++++.+.
T Consensus 231 p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 S-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3 367778888888888888765 56788887776
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-16 Score=133.55 Aligned_cols=305 Identities=11% Similarity=-0.023 Sum_probs=172.8
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cC
Q 018882 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGR----SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AF 77 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~ 77 (349)
+++++|.+.|++..+.| ++..+..|...|.. .+++++|++.|++.... -+...+..+...+.. .+
T Consensus 93 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCC
Confidence 44444444444444432 33334444444443 34444444444444332 123334444444443 34
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhc----cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHc----cCCH
Q 018882 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN----SGQI 149 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 149 (349)
++++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 4445555554444432 33444444444444 445555555555554432 22334444444443 4555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc-----CChH
Q 018882 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-----GDLK 220 (349)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~ 220 (349)
++|..+|++..+.| +...+..+...+.. .++.++|...|++..+.+ +...+..+...+... ++++
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHH
Confidence 66666665555543 33444455555555 566666666666665543 345555566666555 6777
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC---ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh----cCCHHHHH
Q 018882 221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG---KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR----LKCFAEMK 293 (349)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 293 (349)
+|...++...+.+ +...+..+...+...| ++++|...++...+.+ ++..+..+...|.. .+++++|.
T Consensus 314 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 314 QAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 7777777766654 3345555666665545 6677777777777653 45677777777777 78888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh----cCchhhhHHHHHHHHHHh
Q 018882 294 GVLEVMQQRGCKPDKVTYRTMVRAYST----NGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 294 ~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 338 (349)
..|++..+.| +...+..+...|.. .++.++|.+.+++..+.+
T Consensus 388 ~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 388 IWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8888888765 56677777777877 788888888888887776
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-18 Score=136.92 Aligned_cols=255 Identities=8% Similarity=0.062 Sum_probs=207.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCch--HHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC
Q 018882 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG 147 (349)
Q Consensus 70 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (349)
++-....|+++.|+...+..... .|+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999988876544 3443 4556678999999999999986654 23677888899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 018882 148 QIDTMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF 226 (349)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 226 (349)
+.++|.+.++++...+..| +...+..+...+...|++++|...+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876444 566777788999999999999999987 357889999999999999999999999
Q ss_pred HHHHhCCCCCcHHHH---HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 227 RLMRSERIKPSCVTL---CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 303 (349)
+.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++.....
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998764 443211 223344445689999999999998874 4588899999999999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHhcCchhh-hHHHHHHHHHHhhh
Q 018882 304 CKPDKVTYRTMVRAYSTNGMKNH-AKEFQDLVEKMDET 340 (349)
Q Consensus 304 ~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~ 340 (349)
. -+..++..++..+...|+.++ +.++++.+.+..+.
T Consensus 231 p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 231 S-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred C-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 3 378889999999999999876 57888888877654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-16 Score=133.61 Aligned_cols=306 Identities=13% Similarity=0.049 Sum_probs=253.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----c
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGR----SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----A 76 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~ 76 (349)
.+++++|.+.|++..+.| ++..+..|...|.. .+++++|.+.|++.... .+...+..+...+.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 689999999999998865 67788888888888 89999999999998875 366777788888888 7
Q ss_pred CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhc----cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHc----cCC
Q 018882 77 FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN----SGQ 148 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 148 (349)
+++++|..+|++..+.| +...+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 89999999999998876 56777778888876 789999999999998764 46677778888877 899
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh----cCChH
Q 018882 149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR----AGDLK 220 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 220 (349)
.++|.++|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+..+...+.. .++++
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 999999999988875 56677778888876 789999999999988765 56677777777777 88999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-----CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC---CHHHH
Q 018882 221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHA-----GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK---CFAEM 292 (349)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a 292 (349)
+|...|+...+.+ +...+..+...+... +++++|...++...+.+ +...+..+...|...| ++++|
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A 350 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKA 350 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHH
Confidence 9999999988765 445677777888777 89999999999998875 4456777888887766 78999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCchhhhHHHHHHHHHHh
Q 018882 293 KGVLEVMQQRGCKPDKVTYRTMVRAYST----NGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 293 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 338 (349)
.+.|++..+.| +...+..+...|.. .+++++|.+.+++..+..
T Consensus 351 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 351 VEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 99999999874 67888889888988 889999999998876643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-20 Score=162.63 Aligned_cols=118 Identities=13% Similarity=0.274 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018882 168 INTFNILLDSYGKAGHFEKMSAVMEYMQ---KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
..+|+++|++||+.|++++|..+|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4456666666666666666666665554 2355666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCh-hhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 245 VRAYGHAGKP-EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 245 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666666653 4566666666666666666666666544433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-20 Score=163.13 Aligned_cols=135 Identities=14% Similarity=0.129 Sum_probs=119.6
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRS---ERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC 278 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (349)
-..||+++|.+|++.|++++|..+|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 467999999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhhhc
Q 018882 279 LVDAYGRLKCF-AEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLA 343 (349)
Q Consensus 279 li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (349)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++.++++.+...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-------~vL~~Vrkv~P~f~p 264 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-------TVLKAVHKVKPTFSL 264 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-------HHHHHHGGGCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-------HHHHHHHHhCcccCC
Confidence 99999999985 78999999999999999999999998765543 455555555554443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-15 Score=132.38 Aligned_cols=329 Identities=9% Similarity=0.062 Sum_probs=180.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCChhHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC-LKAFAFDKV 82 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a 82 (349)
+.|++++|..+|+++.+. .|.+...|...+..+.+.|++++|..+|+++... .|+...|...+... ...|+.+.|
T Consensus 24 ~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHccchhhH
Confidence 468899999999999886 3567788999999999999999999999999876 46766666555322 223444443
Q ss_pred HH----HHHHHHhc-CCCC-chHHHHHHHHHHhc---------cCcHHHHHHHHHHHhccC-------------------
Q 018882 83 QA----LLSDMSTQ-GIRP-NTVTYNTLIDAYGR---------AKMFAEMELTLVKMLSED------------------- 128 (349)
Q Consensus 83 ~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~------------------- 128 (349)
.+ +|+..... |..| +...|...+..... .|+++.|..+|++..+..
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence 33 44443322 2222 23334333333222 344444444444433310
Q ss_pred --------------------------------------C-----------------------------------------
Q 018882 129 --------------------------------------C----------------------------------------- 129 (349)
Q Consensus 129 --------------------------------------~----------------------------------------- 129 (349)
+
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 0
Q ss_pred ---------CcchhhHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018882 130 ---------EPDVWTMNCTLRAFGN-------SGQID-------TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 130 ---------~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
+.+...|......+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++
T Consensus 260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 1111222222222222 35544 555555555542122345555566666666666666
Q ss_pred HHHHHHHHHhcCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH-HHhcCChhhHHHHHHHH
Q 018882 187 MSAVMEYMQKYHYSWT-IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA-YGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~ 264 (349)
|..+|+++.+.... + ...|..++..+.+.|++++|..+|++..+.. +.+...+...... +...|++++|..+|+..
T Consensus 340 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 340 VHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 66666666553211 2 2355555555556666666666666665432 1122222221111 22456666666666666
Q ss_pred hhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC--HHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC-KPD--KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 265 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.+..+ .++..|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+..+.+++.+..+
T Consensus 418 l~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 418 LKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 55432 2456666667777777777777777777766532 222 33566666666666777777776666665544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-16 Score=136.89 Aligned_cols=334 Identities=8% Similarity=-0.060 Sum_probs=226.8
Q ss_pred CCCCCChHHHHHHHHHHHHc--------CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcC----CC-C-CCCHHHHH
Q 018882 2 LGKCKQPEKAHELFQAMVDE--------GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT----PD-C-QPDVNTYS 67 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~~ 67 (349)
+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++.... .+ . .....++.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 34679999999999887642 11234568999999999999999999999877542 11 1 22356666
Q ss_pred HHHHHHHhc--CChhHHHHHHHHHHhcCCCCchHHHHHHHHHH---hccCcHHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018882 68 ILIKSCLKA--FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY---GRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 68 ~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
.+..++... +++++|...|++..+.. +-++..+..+..++ ...++.++|++.+++..+.. +.+...+..+...
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHH
Confidence 666666554 57899999999998874 22455555555443 34567788899998887664 3445555555544
Q ss_pred HH----ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc--
Q 018882 143 FG----NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-- 216 (349)
Q Consensus 143 ~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 216 (349)
+. ..+++++|.+.+++..... +.+..++..+...+...|++++|...+++..+..+. +..++..+...|...
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH
Confidence 44 4567889999999988875 457788899999999999999999999999887644 566677666655332
Q ss_pred -----------------CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH--HHH
Q 018882 217 -----------------GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV--FFN 277 (349)
Q Consensus 217 -----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 277 (349)
+.++.|...++...+.. +.+..++..+...+...|++++|...|+...+....+... .+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~ 375 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 23566777787776654 4456778889999999999999999999998766543322 233
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHHHhcCC-----------------------CCCHHHHHHHHHHHHhcCchhhhHHHHHH
Q 018882 278 CLVD-AYGRLKCFAEMKGVLEVMQQRGC-----------------------KPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 278 ~li~-~~~~~g~~~~a~~~~~~m~~~~~-----------------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
.+.. .+...|++++|+..|++...... +.+..+|..+..+|...|++++|.+.+++
T Consensus 376 ~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 376 RYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3332 24567899999998887765421 23567899999999999999999999999
Q ss_pred HHHHhhh
Q 018882 334 VEKMDET 340 (349)
Q Consensus 334 ~~~~~~~ 340 (349)
..++.+.
T Consensus 456 ALe~~~~ 462 (472)
T 4g1t_A 456 GLESGSL 462 (472)
T ss_dssp -------
T ss_pred HHhcCCC
Confidence 8887653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-17 Score=123.74 Aligned_cols=199 Identities=13% Similarity=0.011 Sum_probs=127.0
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 018882 24 DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT 103 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 103 (349)
|++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 5677788888888888999999999998888764 5677888888888888899999999888888774 335667777
Q ss_pred HHHHHhcc-----------CcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018882 104 LIDAYGRA-----------KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFN 172 (349)
Q Consensus 104 l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (349)
+..++... |++++|...+++..+.. +.+...+..+..++...|++++|...|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 77777777 66666666666666543 2334555556666666666666666666666554 4555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
.+..++...|++++|...|++..+..+. +...+..+...+...|++++|...+++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666666555422 4555555666666666666666655543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-16 Score=124.51 Aligned_cols=224 Identities=12% Similarity=-0.027 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCC--cc----hhhHHH
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE--PD----VWTMNC 138 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 138 (349)
.+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...+++..+.... ++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44444555555555555555555555543 34455555555555555555555555554433100 01 344555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
+...+...|++++|...+++..+.. |+. ..+...|++++|...++.+...... +...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence 5555555666666666665555542 221 2344455566666666666554322 44555666666666666
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
+++|...++.+.+.. +.+..++..+...+...|++++|...++.+.+... .+...|..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666666665543 33455666666666666666666666666655432 2455666666666666666666666666
Q ss_pred HHhc
Q 018882 299 MQQR 302 (349)
Q Consensus 299 m~~~ 302 (349)
..+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-18 Score=139.77 Aligned_cols=251 Identities=13% Similarity=0.136 Sum_probs=111.2
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHH
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME 118 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 118 (349)
+.|++++|.++++++. .| .+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~-----~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-----EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-----Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 6688999999999882 23 48999999999999999999999652 57789999999999999999999
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
..++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988777764 4557888999999999999999988874 367789999999999999999999999966
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018882 199 YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC 278 (349)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (349)
..|..++.++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......+. .++.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence 57999999999999999999999988 267999999999999999999965544322 23344557
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHH
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
++..|.+.|++++|..+++...... +-....|+-+.-+|++- +++...+.++.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~ 265 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLEL 265 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 9999999999999999999988664 33566777777777665 34444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-16 Score=124.18 Aligned_cols=230 Identities=13% Similarity=0.011 Sum_probs=198.0
Q ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC--CC----HHH
Q 018882 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ--PS----INT 170 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 170 (349)
....+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...+++..+.... ++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 34678888999999999999999999999887 77889999999999999999999999998875321 12 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
+..+...+...|++++|...++++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 8999999999999999999999998864 342 34667788999999999998764 4456788889999999
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHH
Q 018882 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
.|++++|...++.+.+... .+..++..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|.+.
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999987654 367889999999999999999999999999874 23578899999999999999999999
Q ss_pred HHHHHHHhhh
Q 018882 331 QDLVEKMDET 340 (349)
Q Consensus 331 ~~~~~~~~~~ 340 (349)
++...++.++
T Consensus 230 ~~~a~~~~~~ 239 (258)
T 3uq3_A 230 LDAARTKDAE 239 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhChh
Confidence 9999888743
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-16 Score=122.14 Aligned_cols=111 Identities=10% Similarity=-0.069 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 018882 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL 261 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 261 (349)
|++++|...+++..+..+. +...+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...+
T Consensus 98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444444433333211 23333333333444444444444444333332 23333333333344444444444444
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 262 RFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 262 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
+.+.+..+ .+...+..+...+...|++++|...+
T Consensus 175 ~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 175 AKALEQAP-KDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHHHHST-TCHHHHHHHHHHHTC-----------
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHH
Confidence 33333221 12333333333344444444443333
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.7e-16 Score=122.37 Aligned_cols=164 Identities=7% Similarity=-0.057 Sum_probs=75.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
|..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+... .+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHH
Confidence 3344444444444444444444444432 12334444444555555555555555544444321 133444444412222
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCC-CCch------HHHHHHHHHHHHh
Q 018882 216 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSD-IMLD------TVFFNCLVDAYGR 285 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~ 285 (349)
.+++++|...++.+.+.. +.+...+..+...+...|+ +++|...++.+.+.. ..|+ ..+|..+...|..
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 335555555555554432 2223444444445554454 455555555443321 0011 2355556666666
Q ss_pred cCCHHHHHHHHHHHHhc
Q 018882 286 LKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 286 ~g~~~~a~~~~~~m~~~ 302 (349)
.|++++|...+++..+.
T Consensus 234 ~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 234 NRDKVKADAAWKNILAL 250 (272)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 66666666666666655
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-16 Score=124.48 Aligned_cols=222 Identities=9% Similarity=-0.083 Sum_probs=109.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (349)
++..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 34444444444444444444444444332 2233444444455555555555555555544432 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
..|++++|...++++.+.. |+.......+..+...|++++|...++...... +++...+ .++..+...++.++|..
T Consensus 123 ~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLME 198 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHH
Confidence 5555555555555555433 222222223333344456666666665544432 2222222 24445555555566666
Q ss_pred HHHHHhhCCCCc---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHH
Q 018882 260 VLRFIDNSDIML---DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQ 331 (349)
Q Consensus 260 ~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (349)
.++......... +...+..+...|.+.|++++|...|++..... |+. +.....++...|++++|.+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 666554432110 14566677777777777777777777777652 321 222344556666666666654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-15 Score=119.91 Aligned_cols=248 Identities=9% Similarity=-0.021 Sum_probs=170.8
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc--hHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN--TVTYNT 103 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 103 (349)
|...+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.+..++ ...|..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 34456667777888888888888888887763 34455777777788888888888888888877431111 223777
Q ss_pred HHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018882 104 LIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183 (349)
Q Consensus 104 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (349)
+..++...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 7788888888888888888887664 3455677788888888888888888888877663 3356666666634444558
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC---hHHHHHHHHHHHhCC-CCCc------HHHHHHHHHHHHhcCC
Q 018882 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD---LKQMEYLFRLMRSER-IKPS------CVTLCSLVRAYGHAGK 253 (349)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~ 253 (349)
+++|...++++.+.... +...+..+...+...|+ +++|...++++.+.. ..|+ ..++..+...+...|+
T Consensus 158 ~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 88888888888776533 46667777777777777 777888877776431 1132 2466677777888888
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHH
Q 018882 254 PEKLGSVLRFIDNSDIMLDTVFFNCL 279 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (349)
+++|...++.+.+..+ -+...+..+
T Consensus 237 ~~~A~~~~~~al~~~p-~~~~a~~~l 261 (272)
T 3u4t_A 237 KVKADAAWKNILALDP-TNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-cHHHHHHHh
Confidence 8888888888877653 244444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-14 Score=114.08 Aligned_cols=224 Identities=8% Similarity=-0.058 Sum_probs=133.0
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCchHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AFAFDKVQALLSDMSTQGIRPNTVTY 101 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (349)
++.++..+...+...|++++|++.|++..+. .+..++..+...+.. .+++++|...|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 4556666666677777777777777766652 244556666666666 677777777777766654 55566
Q ss_pred HHHHHHHhc----cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018882 102 NTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN----SGQIDTMEKCYEKFQSAGIQPSINTFNI 173 (349)
Q Consensus 102 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (349)
..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666666666 666666666666666543 34455555566665 666666666666666544 3444555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 174 LLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 174 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
+...+.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...++...+.+. ...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence 5555555 566666666666655543 34455555555555 5666666666665555431 34444555
Q ss_pred HHHHh----cCChhhHHHHHHHHhhCC
Q 018882 246 RAYGH----AGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 246 ~~~~~----~~~~~~a~~~~~~~~~~~ 268 (349)
..+.. .+++++|...++...+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 55555 555555655555555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-16 Score=125.56 Aligned_cols=247 Identities=10% Similarity=-0.041 Sum_probs=110.7
Q ss_pred CCCChHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChh
Q 018882 4 KCKQPEKAHELFQAMVDEGC---DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 80 (349)
..|++++|++.|+++.+... +.+..++..+...+...|++++|...|+++.... +.+..++..+...+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 34555555555555554321 0123445555555555555555555555554432 234445555555555555555
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018882 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
+|...+++..+.. +.+...+..+..++...|++++|...++++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~----------------------------------- 138 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFY----------------------------------- 138 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHH-----------------------------------
Confidence 5555555554432 1234444444444445555555555554444
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---Cc
Q 018882 161 SAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK---PS 237 (349)
Q Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 237 (349)
+.. |+.......+..+...|++++|...++....... ++...+ .++..+...++.++|...+......... .+
T Consensus 139 ~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 139 QDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence 432 2222222222233344555555555544443321 122222 2344444445555555555554332110 01
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
...+..+...+...|++++|...++.+....+. +. .....++...|++++|.+.+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence 344555555666666666666666665554311 21 12233445555555555444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-14 Score=123.95 Aligned_cols=141 Identities=12% Similarity=0.129 Sum_probs=98.1
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 018882 15 FQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI 94 (349)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 94 (349)
|++..+.. |-+...|..++.. .+.|++++|..+|+++.... |.+...|...+..+.+.|++++|..+|++....
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-- 75 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-- 75 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Confidence 45555553 4578899999984 78999999999999999864 567788999999999999999999999999987
Q ss_pred CCchHHHHHHHHHH-hccCcHHHHHH----HHHHHhcc-CCCc-chhhHHHHHHHHHc---------cCCHHHHHHHHHH
Q 018882 95 RPNTVTYNTLIDAY-GRAKMFAEMEL----TLVKMLSE-DCEP-DVWTMNCTLRAFGN---------SGQIDTMEKCYEK 158 (349)
Q Consensus 95 ~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~ 158 (349)
.|+...|..++... ...|+.++|.+ +|++.... |..| +...|...+..... .|+++.|..+|++
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 46777777776533 33455555544 66655432 3332 34455555544332 4556666666655
Q ss_pred HHh
Q 018882 159 FQS 161 (349)
Q Consensus 159 ~~~ 161 (349)
..+
T Consensus 156 al~ 158 (530)
T 2ooe_A 156 GCV 158 (530)
T ss_dssp HTT
T ss_pred HHh
Confidence 544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-14 Score=113.01 Aligned_cols=225 Identities=10% Similarity=-0.056 Sum_probs=154.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhc----cCcHHHHHHHHHHHhccCCCcchhhH
Q 018882 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTM 136 (349)
Q Consensus 61 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 136 (349)
-+..++..+...+...+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 356667777777777788888888887777632 45566667777777 777777877777777654 45566
Q ss_pred HHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 018882 137 NCTLRAFGN----SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNI 208 (349)
Q Consensus 137 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (349)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 667777777 777777777777777654 56667777777777 777777777777776654 4556666
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018882 209 VIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLV 280 (349)
Q Consensus 209 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (349)
+...+.. .+++++|...++...+.+ +...+..+...+.. .+++++|...++...+.+. ...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence 6666666 677777777777766653 34556666666666 7777777777777666542 44555666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhcC
Q 018882 281 DAYGR----LKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 281 ~~~~~----~g~~~~a~~~~~~m~~~~ 303 (349)
..|.. .+++++|.+.|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666 677777777777776664
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-15 Score=124.09 Aligned_cols=196 Identities=7% Similarity=0.008 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA-FDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
.+|..+...+...|++++|++.|+++.... +-+..+|+.+..++...|+ +++|+..+++.+... +-+...|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 344445555555555555555555555442 3344455555555555553 555555555555542 224445555555
Q ss_pred HHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHH
Q 018882 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK-AGHFE 185 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 185 (349)
++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 5555555555555555554443 2334444444444555555555555555544443 2244444444444444 33323
Q ss_pred HH-----HHHHHHHHhcCCCCchhhHHHHHHHHHhcC--ChHHHHHHHHHH
Q 018882 186 KM-----SAVMEYMQKYHYSWTIVTYNIVIDAFGRAG--DLKQMEYLFRLM 229 (349)
Q Consensus 186 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~ 229 (349)
+| +..+++.....+. +...|+.+...+...| ++++|.+.+..+
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 33 2444444433322 3344444444444433 344444444443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-14 Score=121.98 Aligned_cols=310 Identities=8% Similarity=-0.080 Sum_probs=221.1
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcC-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT-------PDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ----- 92 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 92 (349)
.....|+.|...+...|++++|++.|++..+. ...+....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34667999999999999999999999886531 111345678999999999999999999999887653
Q ss_pred C-C-CCchHHHHHHHHHHhc--cCcHHHHHHHHHHHhccCCCcchhhHHHHHHH---HHccCCHHHHHHHHHHHHhcCCC
Q 018882 93 G-I-RPNTVTYNTLIDAYGR--AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA---FGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 93 ~-~-~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
+ . .....++..+..++.. .+++++|...|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 1 1134556655555544 457999999999998764 2334444444444 445677888999999988764 3
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018882 166 PSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
.+..++..+...+.. .++.++|...+++.....+. +...+..+...+...|++++|...+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 456666666555544 46788999999998877644 67889999999999999999999999998764 4455666
Q ss_pred HHHHHHHHhc-------------------CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 242 CSLVRAYGHA-------------------GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 242 ~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
..+..+|... +..+.|...++...+... .+...+..+...|...|++++|...|++....
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666555322 235567777777766543 35667888999999999999999999999987
Q ss_pred CCCCCHH--HHHHHHH-HHHhcCchhhhHHHHHHHHHHhh
Q 018882 303 GCKPDKV--TYRTMVR-AYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 303 ~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
...|... .+..+.. .....|++++|...+++..++.+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 5443321 2233332 34578999999999888776543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-15 Score=114.84 Aligned_cols=199 Identities=9% Similarity=-0.036 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDA 107 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (349)
..|..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 444555555555555555555555555432 3344555555555555555555555555555442 2244455555555
Q ss_pred HhccCcHHHHHHHHHHHhccCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018882 108 YGRAKMFAEMELTLVKMLSEDCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 108 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
+...|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 555555555555555555411122 33344444445555555555555555544432 2234444444555555555555
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
|...++.+.+... .+...+..+...+...|++++|...++.+.+
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555554444322 2334444444444455555555555544443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-15 Score=118.92 Aligned_cols=201 Identities=7% Similarity=-0.017 Sum_probs=120.5
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 45566667777777888888888888777653 4566777777777777888888888877777653 33566667777
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (349)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777776654 3345566666666777777777777777766653 335556666666666677777
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+|...++.+.+.... +..++..+...+...|++++|...++.+.+.
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777766666655322 4556666666666666666666666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-14 Score=111.83 Aligned_cols=203 Identities=12% Similarity=-0.024 Sum_probs=146.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 46677778888888888888888888877653 4557777788888888888888888888877763 33666777777
Q ss_pred HHHhcc-CcHHHHHHHHHHHhccCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018882 106 DAYGRA-KMFAEMELTLVKMLSEDCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183 (349)
Q Consensus 106 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (349)
..+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 888888 88888888888877632222 34566777777777888888888887777653 3356677777777777778
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+++|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888777777766543135666666666777777777777777776543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=9.3e-15 Score=120.96 Aligned_cols=248 Identities=9% Similarity=0.002 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc-HHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018882 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM-FAEMELTLVKMLSEDCEPDVWTMNCTLR 141 (349)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (349)
...|..+...+...|++++|+..+++.++.. +-+...|+.+..++...|+ +++|+..+++++... +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4678888889999999999999999999874 3367889999999999997 999999999999875 456788999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh-cCChH
Q 018882 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR-AGDLK 220 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 220 (349)
++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++.+..+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999885 448889999999999999999999999999988755 78999999999998 66657
Q ss_pred HH-----HHHHHHHHhCCCCCcHHHHHHHHHHHHhcC--ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC------
Q 018882 221 QM-----EYLFRLMRSERIKPSCVTLCSLVRAYGHAG--KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK------ 287 (349)
Q Consensus 221 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------ 287 (349)
+| +..+++..... +-+...|..+...+...| ++++|...+..+ +.. +.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 47888887754 456778888888888888 688999999888 443 346788889999998874
Q ss_pred ---CHHHHHHHHHHH-HhcCCCCC-HHHHHHHHHHHH
Q 018882 288 ---CFAEMKGVLEVM-QQRGCKPD-KVTYRTMVRAYS 319 (349)
Q Consensus 288 ---~~~~a~~~~~~m-~~~~~~p~-~~~~~~l~~~~~ 319 (349)
..++|.++++++ .+. .|. ...|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 358999999998 655 343 455665555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.9e-15 Score=115.12 Aligned_cols=165 Identities=4% Similarity=-0.131 Sum_probs=72.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAF 213 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 213 (349)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.+..| +...+..+...+
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~ 151 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS 151 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH
Confidence 33333444444444444444444443332 1233344444444444444444444444444311111 233444444444
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 018882 214 GRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 293 (349)
...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|.
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHH
Confidence 44455555555444444332 22334444445555555555555555555444322 23444444555555555555555
Q ss_pred HHHHHHHhc
Q 018882 294 GVLEVMQQR 302 (349)
Q Consensus 294 ~~~~~m~~~ 302 (349)
+.++++.+.
T Consensus 230 ~~~~~~~~~ 238 (252)
T 2ho1_A 230 SYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.6e-15 Score=113.34 Aligned_cols=162 Identities=9% Similarity=-0.125 Sum_probs=63.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHH
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA-GHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFG 214 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 214 (349)
..+...+...|++++|.+.++++.+.. +.+..++..+...+... |++++|...++.+.+.+..| +...+..+...+.
T Consensus 46 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 124 (225)
T 2vq2_A 46 LVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA 124 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH
Confidence 333333333344444444433333321 11333333344444444 44444444444443311111 1233344444444
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
..|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+.....+...+..+...+...|+.+.|..
T Consensus 125 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 125 KQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 4444444444444443322 122334444444444444444444444444333211233334444444444444444444
Q ss_pred HHHHHH
Q 018882 295 VLEVMQ 300 (349)
Q Consensus 295 ~~~~m~ 300 (349)
+++.+.
T Consensus 204 ~~~~~~ 209 (225)
T 2vq2_A 204 YEAQLQ 209 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-16 Score=131.04 Aligned_cols=300 Identities=14% Similarity=0.036 Sum_probs=221.6
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD----VNTYSILIKSCLKAFAFDKVQALLSDMSTQ----GIRP 96 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~ 96 (349)
.....+......+...|++++|...|++..... +.+ ...+..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445567778888999999999999999988763 233 356778888999999999999998886543 2122
Q ss_pred -chHHHHHHHHHHhccCcHHHHHHHHHHHhccCC-----CcchhhHHHHHHHHHccCC--------------------HH
Q 018882 97 -NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC-----EPDVWTMNCTLRAFGNSGQ--------------------ID 150 (349)
Q Consensus 97 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~ 150 (349)
...++..+...+...|++++|...+++..+... .....++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 245777888899999999999999988765411 1124477788888999999 99
Q ss_pred HHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C----chhhHHHHHHHHHhcCChH
Q 018882 151 TMEKCYEKFQSA----GIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-W----TIVTYNIVIDAFGRAGDLK 220 (349)
Q Consensus 151 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~ 220 (349)
+|...+.+..+. +.. ....++..+...+...|++++|...+++..+.... + ...++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999988876543 111 12456788888999999999999999887653211 1 1347888889999999999
Q ss_pred HHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC-chHHHHHHHHHHHHhcCCHH
Q 018882 221 QMEYLFRLMRSE----RIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIM-LDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 221 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~ 290 (349)
+|...+++..+. +..+ ...++..+...+...|++++|...++...+. +.. ....++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999887642 1111 1457788889999999999999999887643 111 12557888999999999999
Q ss_pred HHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCchhh
Q 018882 291 EMKGVLEVMQQR----GCKP-DKVTYRTMVRAYSTNGMKNH 326 (349)
Q Consensus 291 ~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~ 326 (349)
+|...+++..+. +..+ ...++..+...+...|+...
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999887654 2111 24567777788888887643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-15 Score=117.95 Aligned_cols=198 Identities=8% Similarity=-0.003 Sum_probs=93.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (349)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444444444455555555555444432 2234444444445555555555555555544442 224444555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
..|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555444322 34455555555555555555555555554432 2334455555555555566666666
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.++.+.+... .+..++..+...|...|++++|...++++.+.
T Consensus 181 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 5555554432 23455555666666666666666666666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-15 Score=125.31 Aligned_cols=272 Identities=10% Similarity=-0.028 Sum_probs=172.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCCchH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIKSCLKAFAFDKVQALLSDMSTQ----G-IRPNTV 99 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 99 (349)
.+..+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|...+++.... + .+....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34456667778888888888888877653 2233 46777777888888888888888776553 1 122345
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccC-----CCcchhhHHHHHHHHHccCC-----------------HHHHHHHHH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSED-----CEPDVWTMNCTLRAFGNSGQ-----------------IDTMEKCYE 157 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 157 (349)
++..+...|...|++++|...+++..+.. .+....++..+...+...|+ +++|.+.+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 66777777888888888888887766431 12234466667777777777 777777776
Q ss_pred HHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-Cc----hhhHHHHHHHHHhcCChHHHHHHHH
Q 018882 158 KFQSA----GI-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-WT----IVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 158 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
+..+. +. .....++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 65432 11 112345666777777777877777777766543211 01 2356667777777777777777777
Q ss_pred HHHhCC----C-CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-----CCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 228 LMRSER----I-KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-----IMLDTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 228 ~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
+..+.. . .....++..+...+...|++++|...++...... ......++..+...|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 665321 0 0113456666777777777777777776654321 01123456666777777777777777777
Q ss_pred HHHhc
Q 018882 298 VMQQR 302 (349)
Q Consensus 298 ~m~~~ 302 (349)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-15 Score=126.56 Aligned_cols=275 Identities=11% Similarity=0.005 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch----HHHHHHHHHHhccCcHHHHHHHHHHHhcc----C-CCcchh
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT----VTYNTLIDAYGRAKMFAEMELTLVKMLSE----D-CEPDVW 134 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 134 (349)
..+..+...+...|++++|...|+++.+.+.. +. ..+..+..+|...|++++|...+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44556677888999999999999999987422 33 47888889999999999999999988654 1 123456
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSA----G-IQPSINTFNILLDSYGKAGH-----------------FEKMSAVME 192 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 192 (349)
.+..+...+...|++++|...+++..+. + .+....++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888889999999999999999987654 1 12235578888899999999 999999988
Q ss_pred HHHhc----CC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---C--CcHHHHHHHHHHHHhcCChhhHHHHHH
Q 018882 193 YMQKY----HY-SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI---K--PSCVTLCSLVRAYGHAGKPEKLGSVLR 262 (349)
Q Consensus 193 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~ 262 (349)
+..+. +. ......+..+...+...|++++|...+++..+... . ....++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 11 11345788888999999999999999998865310 1 112378888999999999999999998
Q ss_pred HHhhCCC-----CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHhcCchhhhHHHHH
Q 018882 263 FIDNSDI-----MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG----CK-PDKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 263 ~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
....... .....++..+...|...|++++|...+++..... .. ....++..+..+|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8764311 1125678889999999999999999999887641 11 124578888899999999999999999
Q ss_pred HHHHHhh
Q 018882 333 LVEKMDE 339 (349)
Q Consensus 333 ~~~~~~~ 339 (349)
...++.+
T Consensus 368 ~al~~~~ 374 (411)
T 4a1s_A 368 QHLQLAX 374 (411)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 8877643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-14 Score=122.48 Aligned_cols=279 Identities=11% Similarity=0.023 Sum_probs=214.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHhccCcHHHHHHHHHHHhcc----CCC-
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DCE- 130 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~- 130 (349)
.+....+......+...|++++|...|++..+.+.. + ..++..+...+...|++++|...+++.... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 455667778888999999999999999999887422 3 357888889999999999999999987543 212
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC--------------------HH
Q 018882 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PS----INTFNILLDSYGKAGH--------------------FE 185 (349)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 185 (349)
.....+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 23567788888999999999999999987654110 11 4478888889999999 99
Q ss_pred HHHHHHHHHHhc----C-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CcHHHHHHHHHHHHhcCChh
Q 018882 186 KMSAVMEYMQKY----H-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RIK-PSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 186 ~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~ 255 (349)
+|...+++.... + ......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876542 1 1112457888889999999999999999887643 111 11247888899999999999
Q ss_pred hHHHHHHHHhhC----CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCchh
Q 018882 256 KLGSVLRFIDNS----DIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG----CKP-DKVTYRTMVRAYSTNGMKN 325 (349)
Q Consensus 256 ~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p-~~~~~~~l~~~~~~~g~~~ 325 (349)
+|...++..... +..+ ...++..+...|...|++++|...+++..... -.+ ...++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999887642 1111 15678889999999999999999999887641 111 1557888889999999999
Q ss_pred hhHHHHHHHHHHhh
Q 018882 326 HAKEFQDLVEKMDE 339 (349)
Q Consensus 326 ~a~~~~~~~~~~~~ 339 (349)
+|.+.++...++.+
T Consensus 325 ~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 325 QAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877644
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-13 Score=122.83 Aligned_cols=268 Identities=13% Similarity=0.132 Sum_probs=186.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|++++
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHH
Confidence 3456788888888887521 2222333333 567788888887754 235677788888888888888
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|.+.|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+. +
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 88888553 267778888888888888888888888777654 33333335778888888877544332 2
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018882 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
.++...|..+...|...|++++|...|... ..|..+...+.+.|++++|.+.+++. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 345566667888888888888888888774 47888888888888888888888765 345778
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 320 (349)
..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|.-+..+|++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 88888888888877777655432 2355667788888888888888888887776443 1233345444444444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-14 Score=118.15 Aligned_cols=234 Identities=9% Similarity=-0.109 Sum_probs=145.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcc----CCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcC--C----CCCHHHHH
Q 018882 104 LIDAYGRAKMFAEMELTLVKMLSE----DCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG--I----QPSINTFN 172 (349)
Q Consensus 104 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 172 (349)
....+...|++++|...+++..+. +-.+ ...++..+...+...|+++.|...+.+..+.- . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556667777777777766543 1111 23556666667777777777777776655431 0 11234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCcHHHHH
Q 018882 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYS-----WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RI-KPSCVTLC 242 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 242 (349)
.+...|...|++++|...+++..+.... ....++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6777777777777777777766543111 11246667777777778888877777776551 22 33456677
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhC----CCCchHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCC-HHHHHHH
Q 018882 243 SLVRAYGHAGKPEKLGSVLRFIDNS----DIMLDTVFFNCLVDAYGRLKC---FAEMKGVLEVMQQRGCKPD-KVTYRTM 314 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l 314 (349)
.+...+...|++++|...++...+. +-+.....+..+...|...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 7777777888888887777765432 111223335667777777777 56666666554 22222 3456677
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 315 VRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 315 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
...|...|++++|.+.++...++...
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 77888888888888888887777654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-15 Score=119.77 Aligned_cols=200 Identities=14% Similarity=0.079 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC-Cch
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD----VNTYSILIKSCLKAFAFDKVQALLSDMSTQ----GIR-PNT 98 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 98 (349)
..+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++.... +.. ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 344555666777788888888888777652 223 355667777777788888887777765443 111 124
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhccCC-----CcchhhHHHHHHHHHccCC--------------------HHHHH
Q 018882 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDC-----EPDVWTMNCTLRAFGNSGQ--------------------IDTME 153 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~a~ 153 (349)
.++..+...+...|++++|...+++..+... .....++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 4566666777777777777777766554310 0112345555566666666 55665
Q ss_pred HHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CchhhHHHHHHHHHhcCChHHHH
Q 018882 154 KCYEKFQSA----GIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-----WTIVTYNIVIDAFGRAGDLKQME 223 (349)
Q Consensus 154 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~ 223 (349)
+.+++..+. +.. ....++..+...+...|++++|...+++..+.... ....++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555554321 100 11223444555555555555555555544322100 01123444444444555555555
Q ss_pred HHHHHH
Q 018882 224 YLFRLM 229 (349)
Q Consensus 224 ~~~~~~ 229 (349)
..+++.
T Consensus 244 ~~~~~a 249 (338)
T 3ro2_A 244 EYYKKT 249 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-13 Score=109.25 Aligned_cols=235 Identities=6% Similarity=-0.057 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHhc----CCh----hHHHHHHHHHHhcCCCCchHHHHHHHHHHhc-------cCcH-------HHHHHH
Q 018882 63 VNTYSILIKSCLKA----FAF----DKVQALLSDMSTQGIRPNTVTYNTLIDAYGR-------AKMF-------AEMELT 120 (349)
Q Consensus 63 ~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~ 120 (349)
...|...+....+. ++. ++|..+|++..... +-+...|..+...+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34555555554443 233 56777888877753 4466777777776653 4664 788888
Q ss_pred HHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS-IN-TFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
|++....-.+.+...|..++..+...|++++|..+|+++.+. .|+ .. +|..++..+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888876311334557777777788888888888888887774 332 33 67777777778888888888888877654
Q ss_pred CCCchhhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCc--hHH
Q 018882 199 YSWTIVTYNIVIDAFG-RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-IML--DTV 274 (349)
Q Consensus 199 ~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~ 274 (349)
. .+...|........ ..|++++|..+|+...+.. +.+...|..++..+...|++++|..+|+...... ..| ...
T Consensus 165 p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp T-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3 24444443333322 2578888888888776543 3456777777777777888888888888877752 233 356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.|..++..+.+.|+.+.|..+++++.+.
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777788888888888877765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=6e-14 Score=117.28 Aligned_cols=295 Identities=9% Similarity=-0.064 Sum_probs=213.6
Q ss_pred CCCCChHHHHHHHHHHHHc--CCCC--ChhhHHHHHHH--HHcCCChhHHH-----------HHHHHhhcCCCCCCCHHH
Q 018882 3 GKCKQPEKAHELFQAMVDE--GCDA--NTQSFTALLSA--YGRSGLFDKAF-----------SLLEHMKNTPDCQPDVNT 65 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~~ 65 (349)
.+.+++++|..+++++.+. .... +...|..++.. ....++++.+. +.++.+... +.+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~~~~~ 99 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QARLTG 99 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH---THHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc---CCCchh
Confidence 3578999999999998764 2222 33344444433 22345566666 777777654 222222
Q ss_pred HHH------HHHHHHhcCChhHHHHHHHHHHhc----CCCC-chHHHHHHHHHHhccCcHHHHHHHHHHHhccCC-----
Q 018882 66 YSI------LIKSCLKAFAFDKVQALLSDMSTQ----GIRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC----- 129 (349)
Q Consensus 66 ~~~------ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 129 (349)
+.. ....+...|++++|...+++..+. +-.+ ...++..+..+|...|++++|...+++..+...
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222 556677899999999999998764 2112 346788899999999999999999999876411
Q ss_pred C-cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC
Q 018882 130 E-PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PS----INTFNILLDSYGKAGHFEKMSAVMEYMQKY----HY 199 (349)
Q Consensus 130 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 199 (349)
. ....+++.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1 12357788889999999999999999998764211 11 247888999999999999999999988762 22
Q ss_pred -CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCc
Q 018882 200 -SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RIKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIML 271 (349)
Q Consensus 200 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~ 271 (349)
+....++..+...+...|++++|...+++..+. +-+.....+..+...+...|+ .++|..+++.... ...
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHH
Confidence 335678899999999999999999999988653 212223345678888888898 6666666666522 122
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
....+..+...|...|++++|...+++..+.
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3457778999999999999999999988764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-12 Score=120.13 Aligned_cols=280 Identities=14% Similarity=0.113 Sum_probs=222.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 84 (349)
.|++++|.++.++. .++.+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.+
T Consensus 1089 i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 35556666665543 35778999999999999999999999653 467788889999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 018882 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI 164 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 164 (349)
.+....+.. +++...+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|...
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 999887764 34444445999999999988644442 1 345566778999999999999999999985
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018882 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..+...+..+
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeel 1286 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 1286 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHH
Confidence 37999999999999999999999877 26799999999999999999998877643 3456677799
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCC------CHHHHHHHHH
Q 018882 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--KCFAEMKGVLEVMQQRGCKP------DKVTYRTMVR 316 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p------~~~~~~~l~~ 316 (349)
+..|.+.|.+++|+.+++...... +-....|+.+...|++. ++..++.++|..-. +++| +...|..++.
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHH
Confidence 999999999999999999888765 34667888888777774 34555555555332 2222 5678999999
Q ss_pred HHHhcCchhhhHH
Q 018882 317 AYSTNGMKNHAKE 329 (349)
Q Consensus 317 ~~~~~g~~~~a~~ 329 (349)
.|.+.|+++.|..
T Consensus 1364 LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1364 LYDKYEEYDNAII 1376 (1630)
T ss_pred HHHhcccHHHHHH
Confidence 9999999998884
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=119.13 Aligned_cols=275 Identities=11% Similarity=0.010 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHhccCcHHHHHHHHHHHhcc----CC-Ccchh
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DC-EPDVW 134 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 134 (349)
..+......+...|++++|...++++.+.... + ...+..+...+...|++++|...+++.... +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34555677888999999999999999887422 3 367888899999999999999999887643 21 22356
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGI-QPS----INTFNILLDSYGKAGH--------------------FEKMSA 189 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 189 (349)
.+..+...+...|++++|...+.+..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778888999999999999999998765311 112 3477888889999999 999999
Q ss_pred HHHHHHhc----CC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 190 VMEYMQKY----HY-SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RI-KPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 190 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
.+++.... +. ......+..+...+...|++++|...+++..+. +. .....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98876542 11 112457888888999999999999999887643 11 1113377888899999999999999
Q ss_pred HHHHHhhC----CCC-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCchhhhHH
Q 018882 260 VLRFIDNS----DIM-LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCK-PDKVTYRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 260 ~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~l~~~~~~~g~~~~a~~ 329 (349)
.++...+. +.. ....++..+...|...|++++|...+++.... +-. ....++..+...|...|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99887542 111 12567788899999999999999999988654 111 124577888899999999999999
Q ss_pred HHHHHHHHhh
Q 018882 330 FQDLVEKMDE 339 (349)
Q Consensus 330 ~~~~~~~~~~ 339 (349)
.++...++.+
T Consensus 325 ~~~~a~~~~~ 334 (338)
T 3ro2_A 325 FAEKHLEISR 334 (338)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 9998887754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-13 Score=107.62 Aligned_cols=217 Identities=9% Similarity=-0.009 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------cCCCh-------hHHHHHHHHhhc-CCCCCCCHHHHHHHHHHH
Q 018882 9 EKAHELFQAMVDEGCDANTQSFTALLSAYG-------RSGLF-------DKAFSLLEHMKN-TPDCQPDVNTYSILIKSC 73 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~ll~~~ 73 (349)
++|..+|++..+.. +.++..|..++..+. +.|++ ++|..+|++... .. +.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 67788888888763 556777877777765 35775 788888888877 32 34556788888888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCc-hH-HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHH-HccCCHH
Q 018882 74 LKAFAFDKVQALLSDMSTQGIRPN-TV-TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF-GNSGQID 150 (349)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 150 (349)
.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +.+...|....... ...|+++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888875 343 33 67777888888888888888888887654 23333443332222 1257777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC--chhhHHHHHHHHHhcCChHHHHHHHH
Q 018882 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH-YSW--TIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
+|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++..... .+| ....|..++....+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777776653 3356667777777777777777777777777652 233 34566777777777777777777777
Q ss_pred HHHhC
Q 018882 228 LMRSE 232 (349)
Q Consensus 228 ~~~~~ 232 (349)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-14 Score=121.21 Aligned_cols=216 Identities=8% Similarity=-0.064 Sum_probs=163.5
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHH
Q 018882 42 LFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF-DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120 (349)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 120 (349)
.+++++..++...... +.+...+..+..++...|++ ++|...|++..+.. +-+...|..+..+|...|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3667777777766553 45677777888888888888 88888888887763 33567788888888888888888888
Q ss_pred HHHHhccCCCcchhhHHHHHHHHHcc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CC
Q 018882 121 LVKMLSEDCEPDVWTMNCTLRAFGNS---------GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA--------GH 183 (349)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 183 (349)
|++..+.. |+...+..+...+... |++++|.+.+++..+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 88887663 5567777788888888 88888888888887764 34677788888888877 88
Q ss_pred HHHHHHHHHHHHhcCCC--CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 018882 184 FEKMSAVMEYMQKYHYS--WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL 261 (349)
Q Consensus 184 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 261 (349)
+++|...|++..+.... .+...|..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888776431 367788888888888888888888888887654 345567777788888888888887765
Q ss_pred HHH
Q 018882 262 RFI 264 (349)
Q Consensus 262 ~~~ 264 (349)
..+
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-13 Score=101.46 Aligned_cols=166 Identities=11% Similarity=-0.014 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 018882 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
+.+|..+...+...|++++|.+.|++..+.. +-+..++..+...+.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3445555555555555555555555555543 224445555555555555555555555555444322 34444444455
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
+...++++.+...+....... +.+...+..+...+...|++++|...++...+..+ .+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555544432 23344445555555555555555555555544332 2444455555555555555555
Q ss_pred HHHHHHHHhc
Q 018882 293 KGVLEVMQQR 302 (349)
Q Consensus 293 ~~~~~~m~~~ 302 (349)
...|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 5555555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-14 Score=120.72 Aligned_cols=304 Identities=14% Similarity=0.068 Sum_probs=188.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCh---hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC---
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLF---DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF--- 77 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--- 77 (349)
+.|++++|.+.|++..+.| ++.++..+...+...|+. ++|++.|++..+. +...+..+...+...+
T Consensus 15 ~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHTC--CC
T ss_pred hCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCC
Confidence 4578888888888887765 444555666666667777 7888888877642 4445555555444444
Q ss_pred --ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc---------------------------------------HHH
Q 018882 78 --AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM---------------------------------------FAE 116 (349)
Q Consensus 78 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------------~~~ 116 (349)
++++|..+|++..+.|.. ..+..|...|...+. .+.
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 667888888887776532 234444444433322 222
Q ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHccC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHH
Q 018882 117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSG---QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA----GHFEKMSA 189 (349)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~ 189 (349)
+..+++... ..+...+..+...|...| +.++|.+.|++..+.| +++...+..+...|... +++++|..
T Consensus 164 a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 164 VERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp HHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 222333322 223336777778888888 8888999999888887 44666556677777554 68899999
Q ss_pred HHHHHHhcCCCCchhhHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-----ChhhHHHHH
Q 018882 190 VMEYMQKYHYSWTIVTYNIVIDA-F--GRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG-----KPEKLGSVL 261 (349)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~ 261 (349)
.|++.. .+ ++..+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|...|
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 998887 33 56666777666 4 46789999999999888766 5566777777776 55 888999998
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCchhhhHHHHHH
Q 018882 262 RFIDNSDIMLDTVFFNCLVDAYGR----LKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST----NGMKNHAKEFQDL 333 (349)
Q Consensus 262 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 333 (349)
+... .+ ++..+..|...|.. ..++++|...|+...+.| +......+...|.. ..+.++|..++++
T Consensus 311 ~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 311 EKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 8877 33 55667777777766 348899999999988876 34555666666654 4578888888887
Q ss_pred HHHHh
Q 018882 334 VEKMD 338 (349)
Q Consensus 334 ~~~~~ 338 (349)
..+..
T Consensus 384 A~~~g 388 (452)
T 3e4b_A 384 AKAQD 388 (452)
T ss_dssp HHTTC
T ss_pred HHHCC
Confidence 76543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-13 Score=114.89 Aligned_cols=314 Identities=13% Similarity=0.094 Sum_probs=195.9
Q ss_pred CCCCh---HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCC-----ChhHHHHHHHHhhcCCCCCCC-------------
Q 018882 4 KCKQP---EKAHELFQAMVDEGCDANTQSFTALLSAYGRSG-----LFDKAFSLLEHMKNTPDCQPD------------- 62 (349)
Q Consensus 4 ~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~------------- 62 (349)
..|+. ++|++.|++..+. ++..+..+...+...+ ++++|+..|++....+ .++
T Consensus 47 ~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 47 GTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYP 120 (452)
T ss_dssp ----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCG
T ss_pred ccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCC
Confidence 34555 6777777666543 4455555555444443 5667777777666542 122
Q ss_pred --------------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC---cHHHHHH
Q 018882 63 --------------------VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK---MFAEMEL 119 (349)
Q Consensus 63 --------------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~ 119 (349)
......+...+...+.++++......+.+.-...++..+..|...|...| +.++|++
T Consensus 121 ~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 121 HSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp GGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHH
Confidence 12222333333333433333332222222211234447888888888899 9999999
Q ss_pred HHHHHhccCCCcchhhHHHHHHHHHcc----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHH
Q 018882 120 TLVKMLSEDCEPDVWTMNCTLRAFGNS----GQIDTMEKCYEKFQSAGIQPSINTFNILLDS-Y--GKAGHFEKMSAVME 192 (349)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~ 192 (349)
.|++..+.| .++...+..+...|... +++++|.++|++.. .| +...+..+... + ...+++++|...|+
T Consensus 201 ~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 201 QMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 999999887 56666556677777655 79999999999987 43 55666667666 4 46899999999999
Q ss_pred HHHhcCCCCchhhHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHH
Q 018882 193 YMQKYHYSWTIVTYNIVIDAFGRAG-----DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRF 263 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 263 (349)
+..+.| +...+..+...|. .| ++++|...|+... +-+......+...|.. ..++++|...++.
T Consensus 276 ~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 276 NGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 998876 6777888888777 55 9999999999876 3456677777777766 3489999999999
Q ss_pred HhhCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 264 IDNSDIMLDTVFFNCLVDAYGR----LKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 264 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
..+.|. ......|...|.. ..+..+|...|+...+.|.. +.......+......++.++|.++.+...+...
T Consensus 348 Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~ 423 (452)
T 3e4b_A 348 AARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAARG 423 (452)
T ss_dssp HHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 988774 3455567777764 46899999999999998742 333333333333344556666666666555544
Q ss_pred h
Q 018882 340 T 340 (349)
Q Consensus 340 ~ 340 (349)
.
T Consensus 424 ~ 424 (452)
T 3e4b_A 424 T 424 (452)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.1e-15 Score=119.05 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc------C
Q 018882 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-------GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE------D 128 (349)
Q Consensus 62 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 128 (349)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3556777777788888888888888877663 22334556677777777778888888777777643 1
Q ss_pred -CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 018882 129 -CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA------GIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKY--- 197 (349)
Q Consensus 129 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 197 (349)
.+.....+..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223455666667777777777777777766553 1111 2344556666666667777776666666543
Q ss_pred ---CCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 198 ---HYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 198 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+..| ...++..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 234555566666666666666666666554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-13 Score=99.49 Aligned_cols=169 Identities=11% Similarity=0.014 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018882 167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246 (349)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (349)
++.+|..+...+...|++++|+..|++..+..+. +...+..+..++...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3444555555555555555555555555544322 44455555555555555555555555544332 223344444445
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhh
Q 018882 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNH 326 (349)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 326 (349)
.+...++++.+...+........ .+...+..+...|.+.|++++|++.|++..+... .+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 55555555555555555444332 2344455555555555555555555555554421 134445555555555555555
Q ss_pred hHHHHHHHHHHhh
Q 018882 327 AKEFQDLVEKMDE 339 (349)
Q Consensus 327 a~~~~~~~~~~~~ 339 (349)
|.+.+++..++++
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 5555555544443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=115.82 Aligned_cols=247 Identities=16% Similarity=0.115 Sum_probs=163.5
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCC------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------C
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTP------DCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ------G 93 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 93 (349)
+..++..+...+...|++++|..+|+++.+.. ..+.....+..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 46678889999999999999999999987620 11334567888889999999999999999998764 2
Q ss_pred C-CCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc------CC-CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc---
Q 018882 94 I-RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE------DC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--- 162 (349)
Q Consensus 94 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 162 (349)
- +....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 234567888889999999999999999988764 21 234566788888999999999999999998765
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------CchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 163 ---GIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-------WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 163 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+..| ...++..+...+...|++++|...++++.+.... +.......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence 2122 3557888889999999999999999988764210 00000000
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 232 ERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
....+..+...+...+.+.++...+....... +.+..++..+...|.+.|++++|.+.+++..+
T Consensus 243 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 -----HAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----HHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01111222222333445555555555554432 23455666677777777777777777766654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-13 Score=118.32 Aligned_cols=215 Identities=8% Similarity=-0.059 Sum_probs=184.7
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH-HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 018882 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF-AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
.++++...++...... +.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4677788888766653 34788899999999999999 99999999998775 445788999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc--------CCh
Q 018882 157 EKFQSAGIQPSINTFNILLDSYGKA---------GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA--------GDL 219 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 219 (349)
++..+. .|+...+..+...+... |++++|...+++..+.... +...|..+..++... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 999987 46678899999999999 9999999999999887644 688899999999988 999
Q ss_pred HHHHHHHHHHHhCCCC---CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 220 KQMEYLFRLMRSERIK---PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
++|...|++..+.. + .+...+..+..++...|++++|...++.+.+... .+...+..+...+...|++++|...+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998754 3 4788899999999999999999999999987654 36778888999999999999998776
Q ss_pred HHH
Q 018882 297 EVM 299 (349)
Q Consensus 297 ~~m 299 (349)
..+
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-11 Score=102.83 Aligned_cols=302 Identities=11% Similarity=0.000 Sum_probs=204.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCc----hH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVN----TYSILIKSCLKAFAFDKVQALLSDMSTQGI-RPN----TV 99 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 99 (349)
.+......+...|++++|...+++...... ..+.. +++.+...+...|++++|...+++...... ..+ ..
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344455667789999999999999876532 22222 456667788889999999999998765311 111 23
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcc----CCC--c-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC----CH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSE----DCE--P-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP----SI 168 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~ 168 (349)
++..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++..+..... ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3566778888999999999999988753 211 2 23456667788899999999999999987653221 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hhhHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCC---cHH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT-IVTYN-----IVIDAFGRAGDLKQMEYLFRLMRSERIKP---SCV 239 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 239 (349)
.++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...++........+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 4677788888999999999999998865422211 11222 23344778999999999998876543211 123
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhh----CCCCchH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018882 240 TLCSLVRAYGHAGKPEKLGSVLRFIDN----SDIMLDT-VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTM 314 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 314 (349)
.+..+...+...|++++|...++.... .+..++. ..+..+..++...|+.++|...+++...... . ...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~ 328 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGF 328 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccH
Confidence 466778888999999999999987653 2322233 3666778888999999999999988876411 0 112
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 315 VRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 315 ~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+..+...| +....+++.+.+..+
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHHcc--HHHHHHHHHHHhCCC
Confidence 23344445 445555555544443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-12 Score=106.16 Aligned_cols=314 Identities=13% Similarity=0.021 Sum_probs=214.6
Q ss_pred CCChhhHHHHHHHH--HcCCChhHHHHHHHHhhcCC-CC--CCCHHHHHHHHHH--HHhcCChhHHH---------HHHH
Q 018882 24 DANTQSFTALLSAY--GRSGLFDKAFSLLEHMKNTP-DC--QPDVNTYSILIKS--CLKAFAFDKVQ---------ALLS 87 (349)
Q Consensus 24 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~~ll~~--~~~~~~~~~a~---------~~~~ 87 (349)
.|+..+-+.|-.-| ...+++++|.++++++.+.. .. .++...|-.++.. ..-.+...... ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 35555555555555 78899999999998875421 11 2233333433332 11122333333 6666
Q ss_pred HHHhcCCCCch----HHHHHHHHHHhccCcHHHHHHHHHHHhccCC-----CcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 018882 88 DMSTQGIRPNT----VTYNTLIDAYGRAKMFAEMELTLVKMLSEDC-----EPDVWTMNCTLRAFGNSGQIDTMEKCYEK 158 (349)
Q Consensus 88 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 158 (349)
.+.....+.+. ..+......+...|++++|...+++..+... .....++..+...|...|+++.|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 65443211111 1223344556788999999999999876421 11345778888899999999999999988
Q ss_pred HHhcCC-----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCchhhHHHHHHHHHhcCChHHHHHHHH
Q 018882 159 FQSAGI-----Q-PSINTFNILLDSYGKAGHFEKMSAVMEYMQKY----HY-SWTIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 159 ~~~~~~-----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
..+... . ....+++.+...|...|++++|...+++..+. +. .....++..+...+...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 765311 1 12456788899999999999999999887653 11 1124578888999999999999999999
Q ss_pred HHHh-----CCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCchHHHHHHHHHHHHhcCC---HHHHHHH
Q 018882 228 LMRS-----ERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLDTVFFNCLVDAYGRLKC---FAEMKGV 295 (349)
Q Consensus 228 ~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~ 295 (349)
+..+ .. +....++..+...+...|++++|...++...+. +.+.....+..+...|...++ +.+|...
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 8876 33 334678888999999999999999999987653 222334456777777888888 7777777
Q ss_pred HHHHHhcCCCCC-HHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhh
Q 018882 296 LEVMQQRGCKPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 296 ~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
++. .+..|+ ...+..+...|...|++++|.+.+++..+.....
T Consensus 326 ~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 326 FEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 765 332333 3466778889999999999999999988776543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-11 Score=100.60 Aligned_cols=291 Identities=10% Similarity=0.038 Sum_probs=179.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHh
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANT----QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIKSCLK 75 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~ 75 (349)
..|++++|...+++..+.....+. .+++.+...+...|++++|.+.+++......-.++. .++..+...+..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 468888888888887765311222 145566677778888888888888776531111222 234566677778
Q ss_pred cCChhHHHHHHHHHHhc----CCC--C-chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCC--c--chhhHHHHHHHHH
Q 018882 76 AFAFDKVQALLSDMSTQ----GIR--P-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE--P--DVWTMNCTLRAFG 144 (349)
Q Consensus 76 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~~~ 144 (349)
.|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ....+..+...+.
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 88888888888877653 221 2 2345566777788888888888888877654211 1 2345666777788
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhhHHHHHHHHHh
Q 018882 145 NSGQIDTMEKCYEKFQSAGIQPS--INTFN----ILLDSYGKAGHFEKMSAVMEYMQKYHYSW---TIVTYNIVIDAFGR 215 (349)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 215 (349)
..|++++|...+++.......++ ..... ..+..+...|++++|...++........+ ....+..+...+..
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 265 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL 265 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 88888888888888765421111 11111 23344667888888888887776543221 12245666777888
Q ss_pred cCChHHHHHHHHHHHhC----CCCCcH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 216 AGDLKQMEYLFRLMRSE----RIKPSC-VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
.|++++|...++..... +..++. ..+..+..++...|+.++|...++....... . .-.+..+...| +
T Consensus 266 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~~~~~~g--~ 337 (373)
T 1hz4_A 266 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFISHFVIEG--E 337 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCHHHHTTH--H
T ss_pred cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHHHHHHcc--H
Confidence 88888888888776532 222222 2556667777888888888888887765311 1 11223334444 4
Q ss_pred HHHHHHHHHHhc
Q 018882 291 EMKGVLEVMQQR 302 (349)
Q Consensus 291 ~a~~~~~~m~~~ 302 (349)
....+++.+...
T Consensus 338 ~~~~ll~~~~~~ 349 (373)
T 1hz4_A 338 AMAQQLRQLIQL 349 (373)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 555566665554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-12 Score=104.88 Aligned_cols=295 Identities=8% Similarity=-0.045 Sum_probs=203.7
Q ss_pred CCCCChHHHHHHHHHHHHcC--CC--CChhhHHHHHHH--HHcCCChhHHH---------HHHHHhhcCCCCCCC-HH--
Q 018882 3 GKCKQPEKAHELFQAMVDEG--CD--ANTQSFTALLSA--YGRSGLFDKAF---------SLLEHMKNTPDCQPD-VN-- 64 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~--~~--~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~~~~~~~~~~~~-~~-- 64 (349)
.+.+++++|.++++++.+.. .. ++...|-.++.. ..-.+.++.+. +.++.+..... +.+ ..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~-~~~~~l~~ 101 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQK-KLTGLLKY 101 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGH-HHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCC-CCccHHHH
Confidence 35789999999999887641 21 233334444432 11112222233 66666654311 111 11
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CC----chHHHHHHHHHHhccCcHHHHHHHHHHHhccC----C-C-cc
Q 018882 65 -TYSILIKSCLKAFAFDKVQALLSDMSTQGI-RP----NTVTYNTLIDAYGRAKMFAEMELTLVKMLSED----C-E-PD 132 (349)
Q Consensus 65 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~-~~ 132 (349)
.+......+...|++++|...+++..+... .+ ...++..+..+|...|+++.|...+++..+.. . . ..
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 223344566789999999999999876411 11 34577888999999999999999999877531 1 1 12
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc
Q 018882 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSA----GIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQK-----YHYSWT 202 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~ 202 (349)
..+++.+..+|...|++++|.+.+.+..+. +.. ....++..+...|...|++++|...+++..+ .... .
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-L 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-H
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-H
Confidence 557788889999999999999999987763 111 1245678889999999999999999998876 4333 4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCc-hHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSER----IKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIML-DTV 274 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~ 274 (349)
..++..+...+.+.|++++|...+++..+.. -+.....+..+...+...++ +.+|...++.. +..+ ...
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~ 337 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHH
Confidence 7788899999999999999999999987532 22233455666667777788 66666666653 2222 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+..+...|...|++++|...|++..+.
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6778999999999999999999988653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-12 Score=114.99 Aligned_cols=164 Identities=8% Similarity=-0.018 Sum_probs=77.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 018882 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
...++.+..++.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444555555555555555555555554442 223444555555555555555555555555444322 34445555555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
+...|++++|.+.|++..+.. +-+...+..+..++...|++++|+..+++..+... -+...+..+..+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHH
Confidence 555555555555555444432 22334444444444455555555555544444332 1334444444444444444444
Q ss_pred HHHHHHHH
Q 018882 293 KGVLEVMQ 300 (349)
Q Consensus 293 ~~~~~~m~ 300 (349)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-12 Score=93.68 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 018882 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (349)
.+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344445555555555555555555544322 244555555555555566666665555554432 234455555555566
Q ss_pred hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHH
Q 018882 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 329 (349)
..|++++|...++.+.+... .+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665554432 245555666666666666666666666666553 2245566666666666666666666
Q ss_pred HHHHHHHHhh
Q 018882 330 FQDLVEKMDE 339 (349)
Q Consensus 330 ~~~~~~~~~~ 339 (349)
.++...+..+
T Consensus 166 ~~~~~~~~~~ 175 (186)
T 3as5_A 166 HFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHcCC
Confidence 6666655544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-12 Score=93.86 Aligned_cols=166 Identities=16% Similarity=0.107 Sum_probs=110.4
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
...+..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3456666777777788888888877776653 4466677777777777777777777777776653 335566666777
Q ss_pred HHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018882 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777766553 3345556666666666777777777776666553 3345566666666666666666
Q ss_pred HHHHHHHHHhc
Q 018882 187 MSAVMEYMQKY 197 (349)
Q Consensus 187 a~~~~~~~~~~ 197 (349)
|...++.+.+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666665543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.1e-12 Score=111.89 Aligned_cols=165 Identities=8% Similarity=0.009 Sum_probs=90.4
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
++.+|+.|...+.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|+..|++..+.. +-+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34556666666666666666666666665542 3345556666666666666666666666655542 22345555555
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (349)
.+|...|++++|++.|++..+.. +-+...|..+..++...|++++|++.|++..+.. +-+...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 56666666666666665555443 2234455555555555555555555555555442 223445555555555555555
Q ss_pred HHHHHHHHHH
Q 018882 186 KMSAVMEYMQ 195 (349)
Q Consensus 186 ~a~~~~~~~~ 195 (349)
+|.+.++++.
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.7e-11 Score=91.13 Aligned_cols=196 Identities=13% Similarity=0.004 Sum_probs=136.1
Q ss_pred CchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018882 96 PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL 175 (349)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 175 (349)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|.+.+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677777888888888888888888888876633666677778888888888888888888888764 33667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCch-------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--cHHHHHHHHH
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTI-------VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP--SCVTLCSLVR 246 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 246 (349)
..+...|++++|...+++..+..+. +. ..|..+...+...|++++|...++...+.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 8888888888888888888776533 34 457777777778888888888888877653 22 3456666666
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
++...| ...++.+...+. .+...|.... ....+.+++|...+++..+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 665443 334455444432 2333333332 33455678888888888776
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-12 Score=103.24 Aligned_cols=229 Identities=12% Similarity=0.028 Sum_probs=161.1
Q ss_pred CCCCChHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcC------CCCCCCHHHHHHH
Q 018882 3 GKCKQPEKAHELFQAMVDE-------GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT------PDCQPDVNTYSIL 69 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l 69 (349)
...|++++|+..|++..+. ..+....++..+...+...|++++|+..+++.... ...+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888888888877652 21234677889999999999999999999988754 2213345678899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc------C-CCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc------C-CCcchhh
Q 018882 70 IKSCLKAFAFDKVQALLSDMSTQ------G-IRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE------D-CEPDVWT 135 (349)
Q Consensus 70 l~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 135 (349)
...+...|++++|...+++.... . .+....++..+...+...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998765 1 1234667888999999999999999999998765 1 1234567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhc-------CCCC-CHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCCC
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSA-------GIQP-SINTFNILLDSYGKAGHFE------KMSAVMEYMQKYHYSW 201 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~ 201 (349)
+..+...+...|++++|...+++..+. ...+ ....+..+.......+... .+...++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999998764 1122 2233333333333333322 222222221111 122
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
...++..+...+...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888999999999999999999988653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-12 Score=100.45 Aligned_cols=166 Identities=11% Similarity=0.062 Sum_probs=73.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C-CC
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSA------G-IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY------H-YS 200 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~ 200 (349)
++..+...+...|++++|...+.+..+. . .+....++..+...+...|++++|...+++..+. + .+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444444444444444444444444332 0 0112334445555555555555555555554432 0 11
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCc-HHHHHHHHHHHHhcCChhhHHH------HHHHHhh
Q 018882 201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-------RIKPS-CVTLCSLVRAYGHAGKPEKLGS------VLRFIDN 266 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~ 266 (349)
....++..+...+...|++++|...++++.+. ...+. ...+..+.......+....+.. .++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 12344555555556666666666665555431 11111 1222222222222222222211 1111111
Q ss_pred CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 267 SDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 267 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
..+....++..+...|...|++++|..++++..+
T Consensus 247 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 -DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122345666777777777777777777776654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-11 Score=92.81 Aligned_cols=199 Identities=10% Similarity=-0.002 Sum_probs=156.0
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 018882 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
.++..+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..+..+. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4557788888899999999999999999998864467788888999999999999999999999887644 678899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHH
Q 018882 211 DAFGRAGDLKQMEYLFRLMRSERIKPSC-------VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVD 281 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 281 (349)
..+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...++.+.+... . +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-KKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC-HHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC-CcccHHHHHHHHH
Confidence 99999999999999999988754 3344 4578888889999999999999999988642 2 3567777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 282 AYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+|...| ..+++.+...+. .+...+.... ....+.+++|...++...++.+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 876654 344555555532 2344444433 34456789999999998888664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-09 Score=92.69 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=66.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCC---hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh--
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGL---FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF-- 79 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-- 79 (349)
.+.++.+..+|+++... +|.+...|..-+..-.+.++ ++.+..+|++.......+|+...|..-+....+.++.
T Consensus 79 ~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 79 LKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTT
T ss_pred cCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccc
Confidence 46778888888888876 45667778777777777777 8888888888877632237777777777665555443
Q ss_pred ------hHHHHHHHHHHhc-CC-CCc-hHHHHHHHHHH
Q 018882 80 ------DKVQALLSDMSTQ-GI-RPN-TVTYNTLIDAY 108 (349)
Q Consensus 80 ------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~ 108 (349)
+.+.++|+..... |. .++ ...|...+...
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~ 195 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFL 195 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 2344666665442 54 443 45666655443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-11 Score=96.35 Aligned_cols=208 Identities=13% Similarity=0.030 Sum_probs=118.0
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc----CCCcc-hhhHHHHHHHHHccCCHHHH
Q 018882 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DCEPD-VWTMNCTLRAFGNSGQIDTM 152 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 152 (349)
++++|...+.+. ...|...|++++|...|.+.... +-+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666655 33456677777777777766543 21111 45667777777777777777
Q ss_pred HHHHHHHHhcCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC-c----hhhHHHHHHHHHhcCChHH
Q 018882 153 EKCYEKFQSAGI---QP--SINTFNILLDSYGKA-GHFEKMSAVMEYMQKYHYSW-T----IVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 153 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 221 (349)
...+++..+... .+ ...++..+...|... |++++|+..|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 777777655311 11 134566666777774 77777777777665432110 1 2456666777777777777
Q ss_pred HHHHHHHHHhCCCCCcH------HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-hH---HHHHHHHHHHH--hcCCH
Q 018882 222 MEYLFRLMRSERIKPSC------VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML-DT---VFFNCLVDAYG--RLKCF 289 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---~~~~~li~~~~--~~g~~ 289 (349)
|...+++..+....... ..+..+..++...|++++|...++...+..+.. +. ..+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 77777776654322111 145556666777777777777777766543211 11 12233444443 23455
Q ss_pred HHHHHHHHHHH
Q 018882 290 AEMKGVLEVMQ 300 (349)
Q Consensus 290 ~~a~~~~~~m~ 300 (349)
++|...|+.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 56655554433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.33 E-value=9.2e-09 Score=91.06 Aligned_cols=206 Identities=12% Similarity=0.004 Sum_probs=144.6
Q ss_pred hhhHHHHHHHHHccCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------CC-
Q 018882 133 VWTMNCTLRAFGNSGQIDTME-KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY---------SW- 201 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~- 201 (349)
...|...+..+...|+.++|. ++|++.... .+.+...|..++...-+.|+++.|..+|+.+..... .|
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 334444445555667777786 888888765 345666677788888888999999999988875310 12
Q ss_pred -----------chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-CChhhHHHHHHHHhhCCC
Q 018882 202 -----------TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA-GKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 202 -----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 269 (349)
....|...+....+.|+.+.|..+|..+.+.........|...+..-.+. ++.+.|..+|+...+. .
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 13467777777778888999999999887651122233443333222333 4588999999888775 3
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP--DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+-+...|...+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+..+.+++.+..+.
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3356677788888888899999999999988764322 3457888888778889999999998888777654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-09 Score=85.44 Aligned_cols=244 Identities=7% Similarity=0.033 Sum_probs=164.7
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Q 018882 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM 113 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (349)
++-..-.|++..++.-...+... .++ ..-..+.++++..|+++.. ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~---~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKV---TDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCC---CCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcCcc---chH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 44555689999888844433221 232 3334456788888877642 12234444555444444 322
Q ss_pred HHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI-QPSINTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
|+..+++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 677888877665 45555566788888899999999999998877653 2367778888899999999999999999
Q ss_pred HHHhcCCCC-----chhhHHHHHHHHH--hcC--ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018882 193 YMQKYHYSW-----TIVTYNIVIDAFG--RAG--DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRF 263 (349)
Q Consensus 193 ~~~~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 263 (349)
.|.+.. | +..+...++.++. ..| ++.+|..+|+++.+. .|+..+-..++.++...|++++|...++.
T Consensus 161 ~~~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 998764 4 3555566665533 233 889999999998654 35433334444478889999999999987
Q ss_pred HhhCC---------CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 264 IDNSD---------IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 264 ~~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+.+.. -+-++.+...+|......|+ +|.++++++.+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 65531 02367777556666666676 788889988886
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-09 Score=84.99 Aligned_cols=79 Identities=10% Similarity=0.038 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
+...++++...+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444443332 22333333444444445555555555554443321 1233344444444555555555555555544
Q ss_pred h
Q 018882 161 S 161 (349)
Q Consensus 161 ~ 161 (349)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.31 E-value=5e-10 Score=88.17 Aligned_cols=187 Identities=6% Similarity=-0.031 Sum_probs=117.6
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCchH
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPNTV 99 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 99 (349)
.+...+..+...+.+.|++++|+..|+++.... +.+ ...+..+..++.+.|++++|...|++..+... +....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456777788888899999999999999998763 223 56788888899999999999999999888632 12245
Q ss_pred HHHHHHHHHhc--------cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH
Q 018882 100 TYNTLIDAYGR--------AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF 171 (349)
Q Consensus 100 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (349)
.+..+..++.. .|++++|...|+++.+.. +.+......... +..+... -...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 66777788877 899999999999888763 112222211100 0000000 01113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhc----------CChHHHHHHHHHHHhC
Q 018882 172 NILLDSYGKAGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRA----------GDLKQMEYLFRLMRSE 232 (349)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 232 (349)
..+...|.+.|++++|...|+.+.+..+.. ....+..+..++... |++++|...++.+.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 445555666666666666666665543211 233455555555544 5666666666666543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.6e-10 Score=89.39 Aligned_cols=165 Identities=10% Similarity=-0.075 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCc-hHHHHHHHHHHhccCcHHHHHHHHHHHhccCC---Cc--chhh
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMSTQ----GIRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC---EP--DVWT 135 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~ 135 (349)
|......+...|++++|...|.+.... |-+++ ..+|+.+..+|...|++++|+..+++..+... .+ -..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444445555555444444332 11111 23444444445455555555554444433210 00 0223
Q ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch------
Q 018882 136 MNCTLRAFGNS-GQIDTMEKCYEKFQSAGIQP-S----INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTI------ 203 (349)
Q Consensus 136 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 203 (349)
++.+..+|... |++++|...|++..+..... + ..++..+...+.+.|++++|...|++..+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 44444444443 55555555554444321000 0 123444444444555555555555444443221111
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
..|..+..++...|++++|...+++..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 023334444444455555555554443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-10 Score=88.45 Aligned_cols=186 Identities=9% Similarity=-0.048 Sum_probs=119.7
Q ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcc---hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC--CCCHHHH
Q 018882 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD---VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI--QPSINTF 171 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 171 (349)
+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..++...|++++|...|+++.+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566667777777888888888888877653 222 45666777777788888888888888777532 1123455
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018882 172 NILLDSYGK--------AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243 (349)
Q Consensus 172 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (349)
..+..++.. .|++++|...|+++.+..+. +......+... ..+.. .....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~----~~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRA----KLARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHH----HHHHHHHH
Confidence 666666766 77777777777777765422 22222221110 00000 00112456
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhc
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVDAYGRL----------KCFAEMKGVLEVMQQR 302 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 302 (349)
+...+...|++++|...++.+.+..+.. ....+..+..+|... |++++|...|+.+.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6778888899999999998887653321 345677778888766 8889999999988876
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.3e-10 Score=84.29 Aligned_cols=133 Identities=10% Similarity=-0.023 Sum_probs=89.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 018882 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG 252 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 252 (349)
.+..++.+.|++++|...|++..+..+. +...+..+...+...|++++|...|++..+.. +.+...+..+...+...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 3777788888888888888888776543 67778888888888888888888888887654 445667777777765554
Q ss_pred C--hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 018882 253 K--PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTY 311 (349)
Q Consensus 253 ~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 311 (349)
+ .+.+...++.+.. ..|....+.....++...|++++|...|++..+. .|+....
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 3 3334444444432 2333334445566677788888888888888865 5665433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.27 E-value=4.5e-10 Score=78.38 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=66.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY 108 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (349)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 34455555555666666666666555432 3344555555555555566666666665555442 22344455555555
Q ss_pred hccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 109 GRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 109 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+.++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555554432 22333444444455555555555555554443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.26 E-value=8.6e-10 Score=76.91 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 018882 172 NILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA 251 (349)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (349)
..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.... +.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 33444444444555555544444433221 33444444444444444444444444444332 22333444444444444
Q ss_pred CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 252 GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
|++++|...++.+.+... .+...+..+...+...|++++|...++++..
T Consensus 83 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 444444444444443321 1333444444444555555555555544443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-10 Score=101.10 Aligned_cols=174 Identities=9% Similarity=-0.063 Sum_probs=144.3
Q ss_pred hccCcHHHHHHHHHHHh--------ccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 109 GRAKMFAEMELTLVKML--------SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180 (349)
Q Consensus 109 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (349)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999988 332 4456778888899999999999999999998874 4477889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018882 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV 260 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (349)
.|++++|...|++..+.... +...|..+..++.+.|++++ ...|++..+.. +.+...+..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887644 67888999999999999999 99999988765 45678899999999999999999999
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHhcCC
Q 018882 261 LRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
++.+.+... -+...+..+..++...++
T Consensus 557 ~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 999887653 256777778888766554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.2e-10 Score=100.86 Aligned_cols=173 Identities=9% Similarity=-0.113 Sum_probs=145.2
Q ss_pred HccCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 144 GNSGQIDTMEKCYEKFQ--------SAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
...|++++|.+.+++.. +.. +.+...+..+...+...|++++|...++++.+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 78899999999999988 432 446778888999999999999999999999887644 78899999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 018882 216 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGV 295 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 295 (349)
.|++++|...|++..+.. +.+...+..+..++...|++++ ...++.+.+.+. .+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998765 4466888999999999999999 999999988764 3678899999999999999999999
Q ss_pred HHHHHhcCCCCC-HHHHHHHHHHHHhcCc
Q 018882 296 LEVMQQRGCKPD-KVTYRTMVRAYSTNGM 323 (349)
Q Consensus 296 ~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 323 (349)
|++..+. .|+ ...+..+..++...|.
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988876 444 5677777777766555
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-09 Score=81.78 Aligned_cols=187 Identities=9% Similarity=-0.010 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
..+......+...|++++|...|++..+. .|+ ...|... . . .............+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~--~---~--------------~~~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT--N---V--------------DKNSEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH--H---S--------------CTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh--h---h--------------cchhhhhHHHHHHHHHH
Confidence 33444455666777777777777777765 232 2222210 0 0 00001112223447778
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC--hH
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD--LK 220 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 220 (349)
+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+...+...|+ ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 888899999999998888874 446778888888888999999999999888887644 67778888777765543 33
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHH
Q 018882 221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFN 277 (349)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (349)
.+...++.... ..|....+.....++...|++++|...|++..+.. |+.....
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~ 194 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQK 194 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHH
Confidence 44555555432 23333344445666677888999999999888754 5544433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=4e-09 Score=80.09 Aligned_cols=176 Identities=10% Similarity=0.010 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC----ChhHHHHH
Q 018882 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF----AFDKVQAL 85 (349)
Q Consensus 10 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~ 85 (349)
+|++.|++..+.| ++.++..+...+...+++++|++.|++..+. -+...+..+...+.. + ++++|..+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4566666666654 5666667777777777777777777776654 245556666666655 5 67777777
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhc----cCcHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHc----cCCHHHHHHHH
Q 018882 86 LSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCE-PDVWTMNCTLRAFGN----SGQIDTMEKCY 156 (349)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 156 (349)
|++..+.| +...+..|...|.. .+++++|...|++..+.+.. .....+..+...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77776654 45556666666655 56677777777776665421 124455555555555 55666666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcC
Q 018882 157 EKFQSAGIQPSINTFNILLDSYGKA-G-----HFEKMSAVMEYMQKYH 198 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 198 (349)
++..+. ..+...+..|...|... | +.++|...|+...+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666554 12333444555555432 2 5666666666665554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.3e-08 Score=78.10 Aligned_cols=221 Identities=9% Similarity=-0.040 Sum_probs=112.0
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCchHHHHHHHHHH----hcc---C
Q 018882 42 LFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF--AFDKVQALLSDMSTQGIRPNTVTYNTLIDAY----GRA---K 112 (349)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 112 (349)
..++|+++++.+.... +.+..+|+.--.++...+ ++++++++++.+..... -+..+|+.--..+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccC
Confidence 3356777777776653 345556666666666666 67777777776666532 2444444332222 222 3
Q ss_pred cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 113 MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
++++++.+++++.+.. +-+...|+.-.-++.+.|.++ .+++++.++
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~---------------------------------~~~EL~~~~ 170 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHN---------------------------------DAKELSFVD 170 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTT---------------------------------CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccC---------------------------------hHHHHHHHH
Confidence 4455555555554433 233344444443444444444 004444444
Q ss_pred HHHhcCCCCchhhHHHHHHHHHhcCC------hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh-HHHHHHHHh
Q 018882 193 YMQKYHYSWTIVTYNIVIDAFGRAGD------LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK-LGSVLRFID 265 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 265 (349)
++.+.++. +...|+.-...+...+. ++++++.+..+.... +-|...|+.+...+.+.|+... +..+...+.
T Consensus 171 ~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 171 KVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred HHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 44444333 44444444333333333 555555555555443 3455555555555555555332 334444443
Q ss_pred hCC--CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 266 NSD--IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 266 ~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
+.+ -..++..+..+...|.+.|+.++|.++++.+.+
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 322 123555666666666666666777777766664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-07 Score=75.78 Aligned_cols=219 Identities=6% Similarity=-0.090 Sum_probs=154.0
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhc---CCHHH
Q 018882 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG--QIDTMEKCYEKFQSAGIQPSINTFNILLDSY----GKA---GHFEK 186 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~ 186 (349)
+|+..++.++... +-+...|+.--.++...+ ++++++++++.+.... +-+..+|+.--..+ ... +++++
T Consensus 51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 4444444444332 222333444444444444 5666666666666553 22444444333333 333 67889
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC------hhhHH
Q 018882 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLK--QMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK------PEKLG 258 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~ 258 (349)
++.+++.+.+...+ +..+|+.-.-.+.+.|.++ ++++++..+.+.. +-|...|+.-...+...++ ++++.
T Consensus 129 EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 99999999887655 7888888877788888888 9999999999876 5677888877777777776 88999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE-MKGVLEVMQQRG--CKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
+.++.+....+ -|...|+.+...+.+.|+... +..+..++...+ -..+...+..+..+|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999888765 488999999999988888544 556776665543 13377889999999999999999999999987
Q ss_pred H-Hhh
Q 018882 336 K-MDE 339 (349)
Q Consensus 336 ~-~~~ 339 (349)
+ .++
T Consensus 286 ~~~Dp 290 (306)
T 3dra_A 286 SKYNP 290 (306)
T ss_dssp HTTCG
T ss_pred hccCh
Confidence 6 454
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.4e-10 Score=79.10 Aligned_cols=142 Identities=5% Similarity=-0.106 Sum_probs=71.1
Q ss_pred HHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018882 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
.+...|++++|+..++...... +.+...+..+...|.+.|++++|.+.|++..+.. +-+..+|..+..++...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3444555666666665555432 2223344455555666666666666666655543 2245555555566666666666
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHH-HHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 018882 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYL-FRLMRSERIKPSCVTLCSLVRAYGHAG 252 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 252 (349)
|...|++..+..+. +...|..+...+.+.|++++|... ++...+.. +-++.+|......+...|
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 66666555554422 455555555555555555443332 34444332 223344444434333333
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-10 Score=82.66 Aligned_cols=120 Identities=8% Similarity=-0.077 Sum_probs=58.6
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++...|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHH
Confidence 34455555555555544321 1123344445555555555555555555555442 33445555555555555555555
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHH-HHHHhc
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT-LVKMLS 126 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~ 126 (349)
...|++..+.. +-+...+..+...|.+.|++++|.+. +++..+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555555542 12344555555555555555443332 344443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-08 Score=77.74 Aligned_cols=106 Identities=10% Similarity=0.033 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC----cHHHHHHHH
Q 018882 46 AFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK----MFAEMELTL 121 (349)
Q Consensus 46 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 121 (349)
|++.|++..+. -+..++..+...+...+++++|..+|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 5 A~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp TTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 44444444443 244444445555555555555555555555443 33444444444444 3 455555555
Q ss_pred HHHhccCCCcchhhHHHHHHHHHc----cCCHHHHHHHHHHHHhc
Q 018882 122 VKMLSEDCEPDVWTMNCTLRAFGN----SGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 162 (349)
++..+.+ +...+..+...|.. .+++++|.++|++..+.
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 5544332 22233334444433 44444444444444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.1e-09 Score=84.06 Aligned_cols=166 Identities=6% Similarity=-0.109 Sum_probs=119.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH-HHH
Q 018882 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT-LCS 243 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 243 (349)
+.+...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...++.+.... |+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 445566677777788888888888888888776543 66778888888888888888888888776543 33332 222
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNG 322 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g 322 (349)
....+...++.+.|...++......+ .+...+..+...+...|++++|...|+++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33345666777778888888776653 367778888888888888888888888888764321 2567788888888888
Q ss_pred chhhhHHHHHHH
Q 018882 323 MKNHAKEFQDLV 334 (349)
Q Consensus 323 ~~~~a~~~~~~~ 334 (349)
+.+.|...+++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 888887776654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-09 Score=96.04 Aligned_cols=154 Identities=10% Similarity=-0.057 Sum_probs=116.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 84 (349)
.|++++|++.|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 578999999999988763 4467889999999999999999999999998874 5567889999999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc---CCHHHHHHHHHHHHh
Q 018882 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS---GQIDTMEKCYEKFQS 161 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 161 (349)
.+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999998874 3467788899999999999999999999988765 44567788888888888 999999999999888
Q ss_pred cC
Q 018882 162 AG 163 (349)
Q Consensus 162 ~~ 163 (349)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 75
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-09 Score=85.57 Aligned_cols=167 Identities=9% Similarity=-0.022 Sum_probs=119.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhH-HH
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTM-NC 138 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 138 (349)
+.+...+..+...+...|++++|...|++..... +-+...+..+...+...|++++|...++++.... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3445566677777788888888888888887763 3366677778888888888888888888876653 333322 22
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcC
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAG 217 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 217 (349)
....+...++.+.|...+++..+.. +.+...+..+...+...|++++|...|.++.+..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2233556677777888888877764 4467778888888888888888888888887765331 2667888888888888
Q ss_pred ChHHHHHHHHHHH
Q 018882 218 DLKQMEYLFRLMR 230 (349)
Q Consensus 218 ~~~~a~~~~~~~~ 230 (349)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888888777654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-09 Score=80.19 Aligned_cols=75 Identities=13% Similarity=-0.060 Sum_probs=32.6
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCchhhhHHHHH
Q 018882 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
|...++...+..+ -+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...++
T Consensus 93 a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 93 ELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 3444444443321 134444444444555555555555555444432211 12344444444444555544444444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-08 Score=78.35 Aligned_cols=186 Identities=13% Similarity=0.062 Sum_probs=114.8
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch---HHHH
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT---VTYN 102 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 102 (349)
...+..+...+.+.|++++|+..|+++....+..|. ...+..+..++.+.|++++|...|+++.+.... +. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHH
Confidence 445556666777788888888888887765211121 346667777788888888888888887765321 11 1333
Q ss_pred HHHHHHh------------------ccCcHHHHHHHHHHHhccCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018882 103 TLIDAYG------------------RAKMFAEMELTLVKMLSEDCEPDV-WTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 103 ~l~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
.+..++. ..|++++|...|+++.+.. |+. ..+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH---
Confidence 3444443 3567777777777777552 322 221111100 00000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
.....+...+.+.|++++|...|+.+.+..+.. ....+..+..++.+.|++++|...++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112345677888999999999999888765331 13567888888999999999999999887654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-09 Score=78.94 Aligned_cols=164 Identities=9% Similarity=0.003 Sum_probs=128.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH-
Q 018882 134 WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA- 212 (349)
Q Consensus 134 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 212 (349)
..+......+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+....+ +...+......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 346667788899999999999999987764 44778899999999999999999999999876543 44433332222
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML-DTVFFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 291 (349)
+...++...|...++...+.. +.+...+..+...+...|++++|...++.+.+..+.+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 223233445788888887754 4467889999999999999999999999998876543 46688899999999999999
Q ss_pred HHHHHHHHHh
Q 018882 292 MKGVLEVMQQ 301 (349)
Q Consensus 292 a~~~~~~m~~ 301 (349)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-09 Score=86.54 Aligned_cols=200 Identities=8% Similarity=-0.046 Sum_probs=121.0
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
..|++++|.+++++..+.. +.. + +...++++.|...|.+. ...+...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 3577888998888877642 111 0 11146777777777654 34566778888888
Q ss_pred HHHHHHHhc----CCCC-chHHHHHHHHHHhccCcHHHHHHHHHHHhccC---CCc--chhhHHHHHHHHHccCCHHHHH
Q 018882 84 ALLSDMSTQ----GIRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSED---CEP--DVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 84 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
..+.+.... +-.+ -..+|+.+..+|...|++++|...+++..+.. -.+ ...++..+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 877776543 1110 13466677777777788777777777665321 011 13456666666766 7777777
Q ss_pred HHHHHHHhcCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCc-hhhHHHHHHHHHhcCChHHHH
Q 018882 154 KCYEKFQSAGIQ---P--SINTFNILLDSYGKAGHFEKMSAVMEYMQKYH----YSWT-IVTYNIVIDAFGRAGDLKQME 223 (349)
Q Consensus 154 ~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~ 223 (349)
..|++..+.... + ...++..+...+.+.|++++|+..|++..... ..+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777776543110 0 13456666777777777777777777665431 1111 124555555666667777777
Q ss_pred HHHHHHH
Q 018882 224 YLFRLMR 230 (349)
Q Consensus 224 ~~~~~~~ 230 (349)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-08 Score=77.08 Aligned_cols=207 Identities=8% Similarity=-0.021 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCC-c-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH--HHHHH
Q 018882 98 TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE-P-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSI--NTFNI 173 (349)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 173 (349)
...+..+...+...|++++|...|+++.+.... | ....+..+..++.+.|++++|...|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344455556666677777777777776654211 1 1234555666667777777777777776665321111 12333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcC
Q 018882 174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC-VTLCSLVRAYGHAG 252 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 252 (349)
+..++...+.. . ...|..+...+...|++++|...|+.+.+.. |+. .........
T Consensus 84 ~g~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----A------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----- 139 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH-----
T ss_pred HHHHHHhhhhh-----h------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH-----
Confidence 33333332110 0 0011122222334566777777777766542 222 111111000
Q ss_pred ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCchhhhHHH
Q 018882 253 KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP--DKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
..+...+ ......+...|.+.|++++|...|+++.+..... ....+..+..++.+.|++++|.+.
T Consensus 140 -----~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 140 -----VFLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp -----HHHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 0000000 0111235566777777777777777777652211 124566677777777777777777
Q ss_pred HHHHHHHhhhh
Q 018882 331 QDLVEKMDETC 341 (349)
Q Consensus 331 ~~~~~~~~~~~ 341 (349)
++.+....+..
T Consensus 207 ~~~l~~~~~~~ 217 (225)
T 2yhc_A 207 AKIIAANSSNT 217 (225)
T ss_dssp HHHHHHCCSCC
T ss_pred HHHHHhhCCCc
Confidence 77666555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-07 Score=80.09 Aligned_cols=175 Identities=10% Similarity=-0.051 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH--------------------
Q 018882 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV-------------------- 209 (349)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------------- 209 (349)
+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... +.+...|...
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence 34566777777653 446777888888888889999999999988877 2233222211
Q ss_pred --------------------HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-cCChhhHHHHHHHHhhCC
Q 018882 210 --------------------IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH-AGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 210 --------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~ 268 (349)
+....+.++.+.|..+|..+ ... ..+...|......-.. .++++.|..+|+...+..
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 11111234455555555555 211 1222233211111111 224566666666555432
Q ss_pred CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 269 IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
. -++..+...+....+.|+.+.|..+|+++. .....|...+.--...|+.+.+..++++..
T Consensus 351 ~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 351 P-DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 123344445555555566666666666542 134555555554455566666666555444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.8e-09 Score=85.25 Aligned_cols=159 Identities=8% Similarity=-0.037 Sum_probs=70.2
Q ss_pred HHHhccCcHHHHHHHHHHHhccCC---C--cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC---CC--CHHHHHHHH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDC---E--PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI---QP--SINTFNILL 175 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~ 175 (349)
..|...|++++|...+.+...... . .-..+|+.+..+|...|++++|...+++..+.-. .+ ...++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666666555443210 0 0123445555555555556665555555443210 01 123344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC-----chhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCc-HHHHHHHH
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSW-----TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RIKPS-CVTLCSLV 245 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~ 245 (349)
..|.. |++++|+..|++..+..... ...++..+...+...|++++|...+++..+. +..+. ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 44544 55555555555443321100 0234444455555555555555555544331 11111 11333334
Q ss_pred HHHHhcCChhhHHHHHHHHh
Q 018882 246 RAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~ 265 (349)
.++...|++++|...++...
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 44444455555555555444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.13 E-value=3.8e-07 Score=78.28 Aligned_cols=305 Identities=9% Similarity=-0.023 Sum_probs=169.9
Q ss_pred CC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-hhHH
Q 018882 5 CK-QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA-FDKV 82 (349)
Q Consensus 5 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a 82 (349)
.| +++.|..+|+.+.+. -|. |+++.+..+|++.... .|+...|...+....+.++ .+.+
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CT
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHH
Confidence 45 367777777777654 232 6788888888887765 4677777777776666653 3456
Q ss_pred HHHHHHHHhc-CC-CCchHHHHHHHHHHhc----cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHH-------------
Q 018882 83 QALLSDMSTQ-GI-RPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF------------- 143 (349)
Q Consensus 83 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------------- 143 (349)
..+|+..... |. ..+...|...+..+.. .++.+.+.++|++.+......-...|......-
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 6677766654 42 2355677766665542 356777778888777632111111222111100
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG--H-----FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
...+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+++....+ .+...|...+..+.+.
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHc
Confidence 012344555555555443211123445655555432211 0 2445677777776543 3577777777777788
Q ss_pred CChHHHHHHHHHHHhCCCCCc----------------------------------------HHHHHHHHHHHHhcCChhh
Q 018882 217 GDLKQMEYLFRLMRSERIKPS----------------------------------------CVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~----------------------------------------~~~~~~l~~~~~~~~~~~~ 256 (349)
|+.+.|..++++.... +.+ ...|...+....+.++.+.
T Consensus 227 ~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~ 304 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLEL 304 (493)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHH
Confidence 8888888777766543 111 1234455555556677888
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHH
Q 018882 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK-CFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (349)
|..+|+.+ ... ..+...|-.....-...+ +.+.|..+|+...+.. +-++..|...+.-..+.|+.+.|+.+++.+
T Consensus 305 AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 305 FRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888877 321 123344433222222223 5788888888877752 113445566666667777777777666553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-09 Score=94.23 Aligned_cols=155 Identities=9% Similarity=-0.047 Sum_probs=120.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 018882 146 SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYL 225 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 225 (349)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 346788999999999999999999999999887643 688999999999999999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 018882 226 FRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL---KCFAEMKGVLEVMQQR 302 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 302 (349)
+++..+.. +.+...+..+..++...|++++|...++...+... .+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998765 45678899999999999999999999999987654 3678888999999999 9999999999999887
Q ss_pred CC
Q 018882 303 GC 304 (349)
Q Consensus 303 ~~ 304 (349)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-07 Score=73.96 Aligned_cols=166 Identities=8% Similarity=-0.102 Sum_probs=106.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-CCch----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-Cc----HHHHHH
Q 018882 174 LLDSYGKAGHFEKMSAVMEYMQKYHY-SWTI----VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK-PS----CVTLCS 243 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 243 (349)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...++.+...... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777788888887777765321 1221 12334555666667788888888777663211 22 225777
Q ss_pred HHHHHHhcCChhhHHHHHHHHhh----C-CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHH
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDN----S-DIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKPD-KVTYR 312 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~ 312 (349)
+...|...|++++|...++.+.+ . +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77788888888888888877653 1 1112 2346777888888888888888888776643 22222 56777
Q ss_pred HHHHHHHhcCc-hhhhHHHHHHHHHHhh
Q 018882 313 TMVRAYSTNGM-KNHAKEFQDLVEKMDE 339 (349)
Q Consensus 313 ~l~~~~~~~g~-~~~a~~~~~~~~~~~~ 339 (349)
.+..+|.+.|+ +++|.+.+++..++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 78888888884 5888887777766543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9.1e-07 Score=71.33 Aligned_cols=249 Identities=6% Similarity=-0.013 Sum_probs=143.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 018882 31 TALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG 109 (349)
Q Consensus 31 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (349)
+.+-......+..++|+++++.+.... +.+..+|+..-.++...+ .+++++.+++.+.... +-+..+|+.-..++.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 333333444555678889888888763 556677888777777777 5888888888888774 336667776655555
Q ss_pred cc-C-cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018882 110 RA-K-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID--------TMEKCYEKFQSAGIQPSINTFNILLDSYG 179 (349)
Q Consensus 110 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (349)
.. + ++++++++++++.+.. +.+...|+.-.-++.+.|.++ ++++.++++.+.. +-|...|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 55 5 7788888888888765 445556655554444444444 6777777777664 336666666666665
Q ss_pred hcCC-------HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH--HHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 180 KAGH-------FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ--MEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 180 ~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
+.++ ++++++.+++.....+. |...|+-+-..+.+.|+... ...++ ...+...+ ...
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~-~~~--------- 278 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLN-PDI--------- 278 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC-----------------
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccc---cccccccc-ccc---------
Confidence 5554 45666666666655433 55666555554444443200 00000 00000000 000
Q ss_pred cCChhhHHHHHHHHhhCC-----CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 251 AGKPEKLGSVLRFIDNSD-----IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.....+...+.... -.+++..+..++..|...|+.++|.++++.+.+.
T Consensus 279 ----~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 279 ----ETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----hhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 11111111111111 1356777778888888888888888888887644
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.00 E-value=4.7e-08 Score=78.21 Aligned_cols=209 Identities=7% Similarity=0.009 Sum_probs=146.6
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHH
Q 018882 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVN---TYSILIKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~ 89 (349)
..+..+......|+..+...+...+.-.- + .++..-. ..+.. .+...+..+...|++++|..++++.
T Consensus 32 ~~~s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~ 101 (293)
T 3u3w_A 32 SEVSRIESGAVYPSMDILQGIAAKLQIPI--I---HFYEVLI-----YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHTCCT--H---HHHHTTT-----SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCcCH--H---HHhCCCC-----CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555655445688888888877765332 1 2222211 22233 2334467788999999999999998
Q ss_pred HhcC-CCCch----HHHHHHHHHHhccCcHHHHHHHHHHHhccCCC-cc----hhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018882 90 STQG-IRPNT----VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE-PD----VWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 90 ~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
.+.. ..|+. ..+..+...+...+++++|+..+++....... ++ ..+++.+..+|...|++++|...++++
T Consensus 102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8753 22332 23445777888888999999999999874322 22 236888999999999999999999998
Q ss_pred Hh----c-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-chhhHHHHHHHHHhcCC-hHHHHHHHH
Q 018882 160 QS----A-GIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYH----YSW-TIVTYNIVIDAFGRAGD-LKQMEYLFR 227 (349)
Q Consensus 160 ~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~-~~~a~~~~~ 227 (349)
.+ . +..+ ...++..+...|.+.|++++|...+++..+.. ..+ -..+|..+..++...|+ +++|...++
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 74 1 1122 23478889999999999999999998876432 111 26788899999999995 699999988
Q ss_pred HHHh
Q 018882 228 LMRS 231 (349)
Q Consensus 228 ~~~~ 231 (349)
+...
T Consensus 262 ~Al~ 265 (293)
T 3u3w_A 262 KASF 265 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.4e-08 Score=73.02 Aligned_cols=127 Identities=7% Similarity=-0.055 Sum_probs=80.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...+++..+... .+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 4445556667777777777776653 44666777777777777777777777777666542 256666777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCCcH----------------HHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018882 216 AGDLKQMEYLFRLMRSERIKPSC----------------VTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
.|++++|...++...+.. +.+. ..+..+..++...|++++|...++.+.+..
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 777777777777766543 1111 445555566666666666666666655543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-07 Score=72.17 Aligned_cols=130 Identities=7% Similarity=-0.055 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018882 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (349)
..+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345566777788888888888888774 5567788888888888888888888888888764 44677788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC---------------chhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 179 GKAGHFEKMSAVMEYMQKYHYSW---------------TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
...|++++|...|+...+..... ....+..+..++...|++++|...++...+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88888888888888887754321 12677788888888888888888888887654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-06 Score=69.97 Aligned_cols=240 Identities=7% Similarity=-0.057 Sum_probs=138.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC-cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc-C-CHH
Q 018882 74 LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS-G-QID 150 (349)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 150 (349)
.+.+..++|+++++.++... +-+..+|+.--.++...+ .+++++..++.+.... +-+..+|+.-...+... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 34445567888888888774 225566666666666666 4888888888888665 44556666665555555 5 677
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC----
Q 018882 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE--------KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD---- 218 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 218 (349)
+++++++.+.+.. +-+..+|+.-.-.+.+.|.++ ++++.++++.+.++. |...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 8888888887764 336666665555555555444 677777777666544 66667766666666554
Q ss_pred ---hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 018882 219 ---LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK--LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 219 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 293 (349)
++++++.+.++.... +-|...|+.+-..+.+.|+... ...++ ...+...+. . .....
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~~-~-------------~~~~~ 282 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLNP-D-------------IETVE 282 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC-------------------------
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccc---ccccccccc-c-------------chhHH
Confidence 455566665555443 3444555544444444443210 00000 000100000 0 01122
Q ss_pred HHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 294 GVLEVMQQRG-----CKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 294 ~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
....++...+ -.++...+..++..|...|+.++|.++++.+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 283 AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp ---CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2222222211 13578888999999999999999999999885
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.9e-07 Score=70.48 Aligned_cols=59 Identities=5% Similarity=-0.172 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCchhhh-HHHHHH
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRG----CKP-DKVTYRTMVRAYSTNGMKNHA-KEFQDL 333 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 333 (349)
++..+...|...|++++|...+++..+.. ... -..+|..+..+|.+.|++++| ...++.
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 44444444555555555555544443221 000 133444444445555555554 343443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.6e-07 Score=71.52 Aligned_cols=167 Identities=7% Similarity=-0.062 Sum_probs=113.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCc--hh
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS-----INTFNILLDSYGKAGHFEKMSAVMEYMQKYHY---SWT--IV 204 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 204 (349)
.+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444556667777888888887777666432211 12233455566777888888888887764321 111 44
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh---C-CCCC--cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC----C-CchH
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMRS---E-RIKP--SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD----I-MLDT 273 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~ 273 (349)
+++.+...|...|++++|...+++..+ . +..+ ...++..+...|...|++++|...++...+.. . ..-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 778888888888999998888888762 1 1111 12577888888999999999999888765431 1 1126
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 018882 274 VFFNCLVDAYGRLKCFAEM-KGVLEVMQQ 301 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a-~~~~~~m~~ 301 (349)
.+|..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 776776553
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.94 E-value=8.7e-08 Score=69.33 Aligned_cols=133 Identities=8% Similarity=-0.112 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++...+... .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 344555555566666666666666655443 33455566666666666666666666666655432 2455666666777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 284 GRLKCFAEMKGVLEVMQQRGCKPDKVTYRT--MVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
...|++++|...+++....... +...+.. ....+...|++++|.+.++....+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 7777777777777776665321 3333422 33335666777777777766655543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.9e-08 Score=73.90 Aligned_cols=158 Identities=13% Similarity=-0.030 Sum_probs=100.9
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCCchhhHHHHHHHHHhcCC
Q 018882 144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY----H-YSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~ 218 (349)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... + .......+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4568888888855554432 2235667777888888888888888888776552 1 11234567777777888888
Q ss_pred hHHHHHHHHHHHhC----CCCC--cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC-chHHHHHHHHHHHHhcC
Q 018882 219 LKQMEYLFRLMRSE----RIKP--SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIM-LDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 219 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g 287 (349)
+++|...+++..+. +-.+ ....+..+...+...|++++|...++..... +.. ....++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888776542 2111 2345667777777888888888887776532 211 11234566777778888
Q ss_pred CHHHHHHHHHHHHhc
Q 018882 288 CFAEMKGVLEVMQQR 302 (349)
Q Consensus 288 ~~~~a~~~~~~m~~~ 302 (349)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888777766543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-08 Score=74.08 Aligned_cols=123 Identities=11% Similarity=0.112 Sum_probs=85.0
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH-HHhcCCh-
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS-CLKAFAF- 79 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~- 79 (349)
+...|++++|+..++...+.. +.+...|..+..++...|++++|...|++..... +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 345677788888888777663 4466777778888888888888888888777653 3456666677776 6677777
Q ss_pred -hHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccC
Q 018882 80 -DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 80 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
++|...+++..+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888777763 2356667777777778888888888887777653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-07 Score=68.22 Aligned_cols=129 Identities=12% Similarity=-0.091 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (349)
..+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...++...+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34555666666777777777777776665432 56666677777777777777777777766543 34556677777777
Q ss_pred HhcCChhhHHHHHHHHhhCCCCchHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFF--NCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
...|++++|...++.+.+.... +...+ ...+..+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777777665432 33333 333334666777888877776654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-08 Score=78.89 Aligned_cols=194 Identities=10% Similarity=-0.052 Sum_probs=118.3
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+...+..+...+...|++++|+..|++..... +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45677778888888888888888888887753 4467788888888888888888888888887763 33667778888
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDV-WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (349)
.++...|++++|...|++..+.. |+. ..+...+....+ ..... -+........+.+......+.. + ..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTR-L-IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHH
Confidence 88888888888888888877542 211 111111111111 11111 1222223333444444333322 2 25777
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc-CChHHHHHHHHHHHh
Q 018882 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-GDLKQMEYLFRLMRS 231 (349)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 231 (349)
++|.+.++...+... .+......+...+.+. +.++++.++|..+.+
T Consensus 152 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777776665432 1333333333334333 556777777776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-08 Score=74.74 Aligned_cols=121 Identities=12% Similarity=0.007 Sum_probs=59.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcC---CCC-CCCHHHHHHHHHHHHhcCCh
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT---PDC-QPDVNTYSILIKSCLKAFAF 79 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~ll~~~~~~~~~ 79 (349)
..|++++|.+.++.+... ......++..+...+...|++++|...+++.... .+. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644444331 1123455666666666666666666666655441 000 11234455555566666666
Q ss_pred hHHHHHHHHHHhc----CCCC--chHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 018882 80 DKVQALLSDMSTQ----GIRP--NTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 80 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
++|...+++.... +..+ ....+..+...+...|++++|...+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666665554432 1011 12334445555555555555555555543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.8e-08 Score=77.10 Aligned_cols=194 Identities=8% Similarity=-0.016 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018882 98 TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177 (349)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (349)
...+..+...+...|++++|...|++..... +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555566666666666666655543 2344555556666666666666666666665543 2345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
+...|++++|...|++..+.... +...+...+....+. ..+. -+........+.+......+ ..+ ..|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 66667777776666665543211 111111111111110 1111 11112222223333333333 222 25667777
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 018882 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRL-KCFAEMKGVLEVMQQ 301 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~ 301 (349)
.+.++...+... .+......+...+.+. +.+++|.++|....+
T Consensus 155 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777766665432 2333444444444444 556777777776654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-07 Score=65.09 Aligned_cols=25 Identities=4% Similarity=0.017 Sum_probs=9.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 276 FNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
|..+..+|...|++++|.+.|++..
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333333333333333333333333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.5e-08 Score=76.89 Aligned_cols=186 Identities=7% Similarity=-0.061 Sum_probs=97.4
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhcCCCCc---------------
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSIL-------IKSCLKAFAFDKVQALLSDMSTQGIRPN--------------- 97 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 97 (349)
.++...|.+.|.++.... +-....|..+ ...+.+.++..++...+..-.. +.|+
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 455666666666665542 3344555555 3445555444555444444333 1111
Q ss_pred -------hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC--H
Q 018882 98 -------TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS--I 168 (349)
Q Consensus 98 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 168 (349)
......+...+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1122334455566666666666666665443 322244444445666666666666665443321 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
..+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345556666666666666666666665332213 2234455555666666667777776666654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-07 Score=64.89 Aligned_cols=60 Identities=7% Similarity=-0.024 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
..|..+..++.+.|++++|+..+++..+.+.. +...|..+..++...|++++|...|+..
T Consensus 48 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 48 ILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33333333333333333333333333333211 2333333333333334444444433333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-07 Score=65.87 Aligned_cols=99 Identities=12% Similarity=0.001 Sum_probs=58.3
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+...|..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 34556666666666666666666666665542 3355556666666666666666666666665542 22445555555
Q ss_pred HHHhccCcHHHHHHHHHHHhcc
Q 018882 106 DAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.++...|++++|.+.+++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 6666666666666666655544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-07 Score=67.54 Aligned_cols=97 Identities=14% Similarity=0.036 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
..+..+...+.+.|++++|...|+.+.... +.+...|..+..++...|++++|...|+.+.+..+ .++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHH
Confidence 344444455555555555555555555443 33445555555555555555555555555554432 2344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 018882 284 GRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~m~~~ 302 (349)
...|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-07 Score=63.46 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=4.3
Q ss_pred hcCChHHHHHHH
Q 018882 215 RAGDLKQMEYLF 226 (349)
Q Consensus 215 ~~~~~~~a~~~~ 226 (349)
..|++++|...+
T Consensus 89 ~~~~~~~A~~~~ 100 (125)
T 1na0_A 89 KQGDYDEAIEYY 100 (125)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhcCHHHHHHHH
Confidence 333333333333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-07 Score=64.28 Aligned_cols=60 Identities=7% Similarity=0.071 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33334444444444444444444443331 1123333333333333444444444443333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-07 Score=62.63 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 018882 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (349)
.+..+...+...|++++|...++++.+... .+...+..+...+...|++++|..+++.+.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 344444444455555555555544444321 134444444455555555555555555544332 223444445555555
Q ss_pred hcCChhhHHHHHHHHhhC
Q 018882 250 HAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~ 267 (349)
..|++++|...++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.4e-07 Score=63.88 Aligned_cols=90 Identities=10% Similarity=-0.002 Sum_probs=34.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 018882 138 CTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG 217 (349)
Q Consensus 138 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 217 (349)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.... +...+..+...+...|
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhC
Confidence 33333334444444444444433331 113333333444444444444444444443333211 2333333333444444
Q ss_pred ChHHHHHHHHHH
Q 018882 218 DLKQMEYLFRLM 229 (349)
Q Consensus 218 ~~~~a~~~~~~~ 229 (349)
++++|...++..
T Consensus 95 ~~~~A~~~~~~~ 106 (131)
T 2vyi_A 95 KHVEAVAYYKKA 106 (131)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.4e-07 Score=63.85 Aligned_cols=118 Identities=8% Similarity=-0.058 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
...+..+...+...|++++|...++...... +.+...+..+...+...|++++|...++...+... .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 3444455555555555666655555554432 23445555555556666666666666655554432 234555566666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 018882 283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 323 (349)
+...|++++|...+++...... .+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666655531 144555555555555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-07 Score=67.21 Aligned_cols=99 Identities=8% Similarity=0.110 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018882 168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
...+..+...+.+.|++++|...|+......+. +...|..+..++...|++++|...|++..+.. +.+...+..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 345556666666777777777777776665533 56666667777777777777777777766554 3345666666777
Q ss_pred HHhcCChhhHHHHHHHHhhCC
Q 018882 248 YGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~ 268 (349)
+...|++++|...|+...+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777777777777777766643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.7e-08 Score=70.08 Aligned_cols=119 Identities=8% Similarity=0.006 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH-HHhcCCh--hhH
Q 018882 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA-YGHAGKP--EKL 257 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a 257 (349)
.|++++|...++...+.... +...|..+...+...|++++|...++...+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34455555555554444322 44555555555555555555555555554432 2234445555555 4455555 666
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
...++.+.+... .+...+..+...|...|++++|...|++..+.
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666555432 24455556666666666666666666666655
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.5e-07 Score=70.17 Aligned_cols=126 Identities=11% Similarity=0.002 Sum_probs=52.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHhc
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRA 216 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 216 (349)
....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3344444555555555554444322 222133333334445555555555554332211 110 12344444445555
Q ss_pred CChHHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018882 217 GDLKQMEYLFRLMRSERIKP--SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
|++++|+..|++.......| ..........++.+.|+.++|...|+.+...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555555555444222112 1223333444444555555555555554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.9e-08 Score=67.99 Aligned_cols=99 Identities=12% Similarity=0.019 Sum_probs=61.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...++.+....+ .++..+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 34455555666666666666666666665543 34555666666666666666666666666665442 24555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 018882 282 AYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+|...|++++|...|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 667777777777766666654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.6e-07 Score=75.36 Aligned_cols=132 Identities=8% Similarity=-0.131 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--------------IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+...+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|...++...+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566677777777777777777777766543321 467777777788888888888888877765
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 018882 233 RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM-KGVLEVMQ 300 (349)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 300 (349)
. +.+...+..+..++...|++++|...|+.+.+..+ .+...+..+..++.+.|++++| ...++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 44667777777888888888888888887776543 3566777777777777777777 34555554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.6e-08 Score=69.47 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=93.7
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 018882 225 LFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC 304 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 304 (349)
.++.+.... +.+...+..+...+...|++++|...|+.+....+ .+...|..+..+|...|++++|...|++......
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 344444332 33456777888899999999999999999988764 4788899999999999999999999999998743
Q ss_pred CCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 305 KPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 305 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.+...+..+..+|...|++++|.+.++...++.+.
T Consensus 87 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 87 -XEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred -CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 26788889999999999999999999999887754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-05 Score=63.09 Aligned_cols=137 Identities=10% Similarity=0.005 Sum_probs=71.4
Q ss_pred hcCChh-HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc----------HHHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 018882 75 KAFAFD-KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM----------FAEMELTLVKMLSEDCEPDVWTMNCTLRAF 143 (349)
Q Consensus 75 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (349)
+.|.++ +|+.+.+.+.... +-+..+|+.--.++...+. +++++.+++.+.... +-+..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444 6777777777653 2233444443333322222 455666666665543 33445555555555
Q ss_pred HccC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 144 GNSG--QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH-FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 144 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
...+ .+++++.+++.+.+.. +-|..+|+.-...+...|. ++++++.++.+.+.++. |...|+.....+..
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 5555 3566666666666554 2355555555555555555 35666666666555543 55555555444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=5.2e-07 Score=73.59 Aligned_cols=150 Identities=10% Similarity=-0.094 Sum_probs=117.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--------------HHHHHHHHHH
Q 018882 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS--------------CVTLCSLVRA 247 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 247 (349)
+++++|...++......+ -+...+..+...+.+.|++++|...|++..+...... ...+..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 344445444443332221 1467788889999999999999999999987642221 4789999999
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhh
Q 018882 248 YGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 327 (349)
+...|++++|...++.+.+... .+...|..+..+|...|++++|...|++..+... -+...+..+..++...|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988764 4788999999999999999999999999998743 2677888899999999999888
Q ss_pred HH-HHHHH
Q 018882 328 KE-FQDLV 334 (349)
Q Consensus 328 ~~-~~~~~ 334 (349)
.+ .++.+
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33 44433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.8e-07 Score=59.98 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=75.1
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--chHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRP--NTVTYNT 103 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 103 (349)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 45667777778888888888888888877653 4566777777788888888888888888877763 23 4667777
Q ss_pred HHHHHhcc-CcHHHHHHHHHHHhccC
Q 018882 104 LIDAYGRA-KMFAEMELTLVKMLSED 128 (349)
Q Consensus 104 l~~~~~~~-~~~~~a~~~~~~~~~~~ 128 (349)
+..++... |++++|.+.+++.....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77888888 88888888888877654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=9.9e-07 Score=60.53 Aligned_cols=97 Identities=8% Similarity=-0.099 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+... .+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 344445555555555555555555555433 33445555555556666666666666655555432 2445555566666
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 018882 284 GRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~m~~~ 302 (349)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666655544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-06 Score=60.26 Aligned_cols=94 Identities=7% Similarity=-0.116 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
+..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|...++...+.. +.+...+..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333444444444444444444444443322 34444444444444555555555544444332 2233444444444555
Q ss_pred cCChhhHHHHHHHHhh
Q 018882 251 AGKPEKLGSVLRFIDN 266 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~ 266 (349)
.|++++|...++...+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555544443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-06 Score=58.85 Aligned_cols=98 Identities=13% Similarity=-0.020 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
+..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4456666677777777777777777776542 3456666677777777777777777777776653 234566666667
Q ss_pred HHhccCcHHHHHHHHHHHhcc
Q 018882 107 AYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~ 127 (349)
++...|++++|...+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 777777777777777776654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=3.3e-06 Score=56.78 Aligned_cols=92 Identities=12% Similarity=0.044 Sum_probs=39.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..++...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHH
Confidence 333444444444444444444444332 223334444444444444444444444444433211 333444444444444
Q ss_pred CChHHHHHHHHHHH
Q 018882 217 GDLKQMEYLFRLMR 230 (349)
Q Consensus 217 ~~~~~a~~~~~~~~ 230 (349)
|++++|...++...
T Consensus 86 ~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 86 NRFEEAKRTYEEGL 99 (118)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-06 Score=60.64 Aligned_cols=103 Identities=6% Similarity=-0.133 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--c----hHHHHHH
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--L----DTVFFNC 278 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~~~~~~ 278 (349)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..++...+.... + -..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34444555555555555555555554433 233445555555555555555555555554432100 0 0134555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVT 310 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 310 (349)
+..++...|++++|++.|++.... .||+.+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 666666777777777777666654 344443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.8e-07 Score=63.67 Aligned_cols=95 Identities=15% Similarity=0.047 Sum_probs=49.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (349)
.+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|+......+. ++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 33444445555555555555555555443 224455555555555555555555555555554322 4445555555555
Q ss_pred hcCChHHHHHHHHHHHh
Q 018882 215 RAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~ 231 (349)
..|++++|...|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=71.05 Aligned_cols=88 Identities=10% Similarity=-0.120 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018882 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY 318 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 318 (349)
..+..+..++...|++++|...++...+... .+...+..+..+|...|++++|...|++...... -+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence 4555666666666777777666666665432 3555666666667777777777777766665532 1445555555555
Q ss_pred HhcCchhhhH
Q 018882 319 STNGMKNHAK 328 (349)
Q Consensus 319 ~~~g~~~~a~ 328 (349)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=9.4e-07 Score=62.15 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=82.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...++......+ .++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 45566677788889999999999999988765 45678888888999999999999999999887654 36677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 018882 282 AYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+|...|++++|...|+...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988776
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.8e-07 Score=61.51 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCc----hHH
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPN----TVT 100 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~ 100 (349)
..++..+...+.+.|++++|++.|++..+.. |.+...|..+..++...|++++|+..+++.++... .++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3456667777777788888888887777653 45566777777777777787777777777665411 111 124
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhcc
Q 018882 101 YNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 101 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
|..+..++...|++++|++.|++....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555556666666666666666666543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-06 Score=60.09 Aligned_cols=100 Identities=9% Similarity=-0.088 Sum_probs=81.1
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018882 201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLV 280 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (349)
.+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...++...+... .+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 357778888888888899999999888887664 44567888888888888999999888888877653 3677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 018882 281 DAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+|...|++++|...|++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888889999998888888765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-06 Score=58.40 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=5.5
Q ss_pred HccCCHHHHHHHHHH
Q 018882 144 GNSGQIDTMEKCYEK 158 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~ 158 (349)
...|++++|...+++
T Consensus 17 ~~~~~~~~A~~~~~~ 31 (112)
T 2kck_A 17 YDAGNYTESIDLFEK 31 (112)
T ss_dssp HSSCCHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHH
Confidence 333333333333333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.5e-06 Score=59.40 Aligned_cols=98 Identities=11% Similarity=0.040 Sum_probs=62.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD----VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY 101 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (349)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 4555666666677777777777777777654 344 4556666666666777777777776666552 2245556
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhcc
Q 018882 102 NTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 102 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
..+..++...|++++|...+++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666666666666666666666654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-06 Score=64.63 Aligned_cols=129 Identities=11% Similarity=-0.067 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------------chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSW---------------TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK 235 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 235 (349)
+..+...+...|++++|...|++........ ....+..+..++...|++++|...++...+.. +
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence 3444444455555555555555544432110 02566667777777777777777777776553 3
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHH-HHHHHHHh
Q 018882 236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK-GVLEVMQQ 301 (349)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~ 301 (349)
.+...+..+..++...|++++|...++...+... .+...+..+..++...++..++. ..+..|..
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777777777777777766543 25556666666666666665555 44444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-06 Score=59.30 Aligned_cols=101 Identities=10% Similarity=-0.102 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018882 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
+.+...+..+...+...|++++|...|+........ +...|..+..++...|++++|...++...+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 346777888888888899999999998888776543 67788888888888899999998888887754 4466788888
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC
Q 018882 245 VRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
..++...|++++|...++.+.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888889999998888887653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.7e-06 Score=70.48 Aligned_cols=197 Identities=9% Similarity=-0.092 Sum_probs=133.2
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCc
Q 018882 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPD---------------VNTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRPN 97 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 97 (349)
...+.+.|++++|++.|..+.+......+ ..++..+...|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44567788888888888887765321111 123677888899999999999888876553 11112
Q ss_pred h----HHHHHHHHHHhccCcHHHHHHHHHHHhcc----CC-CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC----
Q 018882 98 T----VTYNTLIDAYGRAKMFAEMELTLVKMLSE----DC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI---- 164 (349)
Q Consensus 98 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 164 (349)
. .+.+.+-..+...|+.+.+..+++..... +. ..-..++..+...+...|++++|..+++++...-.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 22333444555668888888888776542 11 22345677888889999999999999988765311
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC-c--hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018882 165 -QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH---YSW-T--IVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 165 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
+....++..++..|...|++++|..++++..... ..| . ...+..+...+...+++++|...+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1124578888899999999999999998775421 111 1 2456666677778899999988777664
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=2e-05 Score=66.58 Aligned_cols=197 Identities=8% Similarity=-0.067 Sum_probs=130.2
Q ss_pred HHHHhccCcHHHHHHHHHHHhccCCCcch----------------hhHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCC
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDV----------------WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI-QPS 167 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 167 (349)
...+...|++++|.+.|.++.+....... ..+..+...|...|++++|.+.+..+.+.-. .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567789999999999988876422111 1366778888889999999888887665311 112
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhC--C---
Q 018882 168 IN----TFNILLDSYGKAGHFEKMSAVMEYMQKY----HYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--R--- 233 (349)
Q Consensus 168 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~--- 233 (349)
.. +.+.+-..+...|+.+.|..++...... +..+ -..++..+...+...|++++|..+++.+... +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 2222333344567888888888776432 2111 2456777888888889999988888877532 1
Q ss_pred CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLD--TVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
-+....++..++..|...|++++|...++..... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1122456777888888888988888888776532 21111 34566677777888888888887776654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-06 Score=60.28 Aligned_cols=110 Identities=5% Similarity=-0.024 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--ch----HHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LD----TVFFN 277 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 277 (349)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++.+...... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344445555555556666665555554433 234455555555566666666666666555443210 11 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 278 CLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 316 (349)
.+...+...|++++|...|+...+. .|+......+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 6677777777777777777777665 244444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-06 Score=61.56 Aligned_cols=96 Identities=15% Similarity=0.007 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+... .+...|..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34444444444444444444444444332 22334444444444444444444444444444332 13444444555555
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 018882 285 RLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~ 302 (349)
..|++++|...|++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 555555555555544443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-06 Score=62.95 Aligned_cols=103 Identities=13% Similarity=-0.053 Sum_probs=90.5
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018882 236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMV 315 (349)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 315 (349)
.+...+..+...+...|++++|...|+...+... .+...|..+..+|...|++++|...|++....... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4566788888999999999999999999988754 37889999999999999999999999999987532 688899999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 316 RAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.+|...|++++|.+.++...++.+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998887654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=8.6e-06 Score=57.31 Aligned_cols=61 Identities=8% Similarity=-0.013 Sum_probs=26.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
.+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...|++..+
T Consensus 67 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 67 LHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444444444444444444444332 11333444444444444444444444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00021 Score=57.36 Aligned_cols=184 Identities=7% Similarity=-0.033 Sum_probs=129.1
Q ss_pred hhhHHHHHHH---HHcCCChh-HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhc
Q 018882 27 TQSFTALLSA---YGRSGLFD-KAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA----------FDKVQALLSDMSTQ 92 (349)
Q Consensus 27 ~~~~~~l~~~---~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~ 92 (349)
+..|..+... ..+.|.+. +|+.+++.+.... |.+..+|+.--..+...+. +++++.+++.+...
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 3445444433 34566655 8999999999874 4556667765555544433 57888899998887
Q ss_pred CCCCchHHHHHHHHHHhccC--cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCC-HHHHHHHHHHHHhcCCCCCHH
Q 018882 93 GIRPNTVTYNTLIDAYGRAK--MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQ-IDTMEKCYEKFQSAGIQPSIN 169 (349)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~ 169 (349)
. +-+..+|+.-.-++...+ .+++++.+++++.+.. +-+...|+.-.-++...|. ++++++.++.+.+.. +-|..
T Consensus 104 ~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~S 180 (331)
T 3dss_A 104 N-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYS 180 (331)
T ss_dssp C-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHH
T ss_pred C-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHH
Confidence 4 447778887766676677 4899999999999876 5567777777777777887 589999999999876 44777
Q ss_pred HHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 170 TFNILLDSYGKA--------------GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 170 ~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
.|+.....+... +.++++++.+.......+. |...|+-+--.+.+.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 887776666655 3467777777777766544 666776554444433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.51 E-value=7e-07 Score=76.45 Aligned_cols=117 Identities=12% Similarity=0.030 Sum_probs=92.9
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+...+..+..++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 567899999999999998874 4568889999999999999999999999998874 5677888999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHH--HhccCcHHHHHHHHH
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDA--YGRAKMFAEMELTLV 122 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 122 (349)
|.+.+++..+.. +-+...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988863 2244555555555 778899999999888
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.7e-06 Score=58.44 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=47.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--Cc----hhhHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS--WT----IVTYNI 208 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 208 (349)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++........ ++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555554442 224444555555555555555555555554433211 11 344445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 018882 209 VIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+...+...|++++|...++...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-07 Score=61.78 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=64.5
Q ss_pred CCCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 4 KCKQPEKAHELFQAMVDEG--CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
..|++++|+..|++..+.+ -+.+..++..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 4688888888888888763 23346678888888888888888888888887763 4567778888888888888888
Q ss_pred HHHHHHHHHhc
Q 018882 82 VQALLSDMSTQ 92 (349)
Q Consensus 82 a~~~~~~~~~~ 92 (349)
|...+++....
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.1e-06 Score=58.47 Aligned_cols=97 Identities=7% Similarity=-0.122 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDA 107 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (349)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++..+.. +-+...+..+..+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~ 94 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 94 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345666777888888888888888887763 4577788888888888888888888888888764 2356677788888
Q ss_pred HhccCcHHHHHHHHHHHhcc
Q 018882 108 YGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 108 ~~~~~~~~~a~~~~~~~~~~ 127 (349)
+...|++++|...+++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888754
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-06 Score=58.80 Aligned_cols=95 Identities=11% Similarity=-0.097 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
+..+...+.+.|++++|...++...+.. +.+...+..+..++...|++++|...++...+..+. +...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3444455555666666666666655443 334555555555666666666666666655554322 44455555556666
Q ss_pred cCCHHHHHHHHHHHHhc
Q 018882 286 LKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 286 ~g~~~~a~~~~~~m~~~ 302 (349)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=6e-07 Score=76.85 Aligned_cols=120 Identities=13% Similarity=-0.092 Sum_probs=77.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
...+.+.|++++|...+++..+.... +...|..+..++.+.|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34456677788888888777766433 56777777777777788888887777777654 34566777777777777777
Q ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 018882 255 EKLGSVLRFIDNSDIMLDTVFFNCLVDA--YGRLKCFAEMKGVLE 297 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 297 (349)
++|...++.+.+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777664322 33344444444 667777777777766
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.9e-06 Score=60.02 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-Cc----hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYS-WT----IVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444455555555555555444332100 00 123444444555555555555555444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-06 Score=61.96 Aligned_cols=137 Identities=10% Similarity=0.020 Sum_probs=104.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCc--HHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC-ch
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI---KPS--CVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIM-LD 272 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~ 272 (349)
..++..+...+...|++++|...+++..+... .+. ..++..+...+...|++++|...++...+. +.. ..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45677888889999999999999988764311 111 246788889999999999999999886542 111 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKP-DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
..++..+...+...|++++|...+++.... +..+ ....+..+...+...|++++|.+.++...++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 457788899999999999999999887654 2111 245677888889999999999999998877654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.38 E-value=9.9e-06 Score=69.03 Aligned_cols=131 Identities=7% Similarity=-0.105 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--------------IVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
...+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|...++...+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44566777778888888888888887776542211 4777788888888888888888888887664
Q ss_pred CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 018882 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG-VLEVMQ 300 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~ 300 (349)
+.+...|..+..++...|++++|...|+.+.+... -+...+..+..++.+.++.+++.+ .+..|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888888888888888888877653 255677777888888887776653 444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-05 Score=53.90 Aligned_cols=92 Identities=12% Similarity=-0.085 Sum_probs=50.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch---HHHHHHHHHH
Q 018882 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSC---VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD---TVFFNCLVDA 282 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 282 (349)
+...+...|++++|...++.+.+.. +.+. ..+..+..++...|++++|...++.+.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3444455556666666665555432 1111 34455555566666666666666665543321 1 4445556666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 018882 283 YGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~ 302 (349)
+...|++++|...|+.+...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.6e-05 Score=52.11 Aligned_cols=89 Identities=11% Similarity=0.019 Sum_probs=37.3
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHH
Q 018882 141 RAFGNSGQIDTMEKCYEKFQSAGIQPSI---NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT---IVTYNIVIDAFG 214 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 214 (349)
..+...|++++|...|+.+.+... .+. ..+..+..++...|++++|...++.+.+..+. + ...+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHH
Confidence 334444444444444444444321 111 23334444444444444444444444433211 1 233444444444
Q ss_pred hcCChHHHHHHHHHHHh
Q 018882 215 RAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~ 231 (349)
..|++++|...++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-05 Score=68.65 Aligned_cols=130 Identities=9% Similarity=-0.057 Sum_probs=92.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS--------------INTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
...+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34555666667777777777777777666422111 5678888888889999999999998888776
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH-HHHHH
Q 018882 199 YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS-VLRFI 264 (349)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~ 264 (349)
.. +...|..+..+|...|++++|...|+++.+.. +-+...+..+..++...++.+++.+ .+..|
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 67888888888999999999999999887754 3455677777777877777776653 33433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1e-05 Score=66.82 Aligned_cols=90 Identities=9% Similarity=-0.044 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 316 (349)
+...|..+..++.+.|++++|...++.+.+... .+...|..+..+|...|++++|...|++..+... .+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 346677777777888888888888888777653 3567777778888888888888888888777632 14555666666
Q ss_pred HHHhcCchhhhH
Q 018882 317 AYSTNGMKNHAK 328 (349)
Q Consensus 317 ~~~~~g~~~~a~ 328 (349)
++...++.+++.
T Consensus 350 ~~~~~~~~~~a~ 361 (370)
T 1ihg_A 350 VKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-05 Score=66.33 Aligned_cols=123 Identities=7% Similarity=-0.029 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc---------------CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018882 170 TFNILLDSYGKAGHFEKMSAVMEYMQKY---------------HYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (349)
.+..+...+.+.|++++|...|++..+. ..+.+...|..+..++.+.|++++|...+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 4666777788888888888888777651 112246788888999999999999999999998764
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
+.+...+..+..++...|++++|...++.+.+... .+...+..+...+...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999999999999999999887653 366777777777777777776654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-06 Score=57.76 Aligned_cols=83 Identities=17% Similarity=0.082 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 018882 147 GQIDTMEKCYEKFQSAG--IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEY 224 (349)
Q Consensus 147 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 224 (349)
|++++|+..|++..+.+ -+.+...+..+..++...|++++|...|++..+..+. +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444432 1112333444444444444444444444444443322 34444444444444444444444
Q ss_pred HHHHHH
Q 018882 225 LFRLMR 230 (349)
Q Consensus 225 ~~~~~~ 230 (349)
.+++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-05 Score=57.41 Aligned_cols=64 Identities=8% Similarity=-0.024 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
...|..+..++...|++++|...++.+.+..+ .+...|..+..+|...|++++|...|+.....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 35666677777777777777777777766543 35666777777777777777777777777765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00015 Score=63.27 Aligned_cols=173 Identities=6% Similarity=-0.072 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC-
Q 018882 149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH----------FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG- 217 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 217 (349)
.++|++.++++.+.. +-+..+|+.--..+...|+ ++++...++.+.+..++ +..+|+.-.-.+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 356777777777764 2355566665555555555 78888888888877655 7778887777777778
Q ss_pred -ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc---------
Q 018882 218 -DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG-KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--------- 286 (349)
Q Consensus 218 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------- 286 (349)
+++++.+.++.+.+.. +-+...|+.-...+...| .++++.+.++.+.+..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 6688888888888765 456777777777777777 788888888888877653 777777777666653
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhh
Q 018882 287 -----KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNH 326 (349)
Q Consensus 287 -----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 326 (349)
+.++++.+.++........ |...|..+-..+.+.+..++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578899999888877432 67788887777777776444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-05 Score=57.47 Aligned_cols=65 Identities=17% Similarity=0.118 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
...|..+..++.+.|++++|...++...+.. +.+...|..+..++...|++++|...++...+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 3556666666666677777776666666543 3445666666666777777777777766666543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.3e-05 Score=55.22 Aligned_cols=65 Identities=17% Similarity=0.070 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC-CHHHH----HHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR-----GCKP-DKVTY----RTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.|..+..++.+.|++++|+..+++.++. .+.| +...| .....++...|++++|...+++..++.+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 5555555666666666666666555543 1123 23445 5555666666666666666666666554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00014 Score=63.54 Aligned_cols=175 Identities=7% Similarity=-0.052 Sum_probs=134.9
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 018882 41 GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA----------FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR 110 (349)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (349)
...++|++.++++.... +.+..+|+..-.++...++ ++++.+.++.+.+.. +-+..+|+.-.-++.+
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34568899999998864 5567778887777777776 889999999998875 3477788887778888
Q ss_pred cC--cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc------
Q 018882 111 AK--MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG-QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA------ 181 (349)
Q Consensus 111 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 181 (349)
.+ +++++++.++++.+.. +-+...|+.-..++.+.| .++++.+.++++.+.. +-+...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence 88 6799999999999876 556777887777777888 8899999999988875 33777887777776663
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH
Q 018882 182 --------GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 182 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
+.++++.+.+++.....+. +...|..+-..+.+.++.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4568888888888876644 77888887777777666443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.23 E-value=7e-06 Score=66.93 Aligned_cols=149 Identities=11% Similarity=-0.009 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ ....|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHH
Confidence 345667777788888888888888887764 344321 11112222221111 1125566666
Q ss_pred HHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHH
Q 018882 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS-YGKAGHFE 185 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 185 (349)
+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...|++..+.. +.+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777666553 3345566666667777777777777776665542 1133344444333 22334556
Q ss_pred HHHHHHHHHHhc
Q 018882 186 KMSAVMEYMQKY 197 (349)
Q Consensus 186 ~a~~~~~~~~~~ 197 (349)
.+...|..+...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 666666666543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.17 E-value=9.2e-06 Score=66.25 Aligned_cols=150 Identities=12% Similarity=0.033 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018882 168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
...+..+...+.+.|++++|...|++..... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3445556666667777777777777766543 22221 112222222221110 1366777778
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHH-HHhcCchh
Q 018882 248 YGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRA-YSTNGMKN 325 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~-~~~~g~~~ 325 (349)
+.+.|++++|...++...+... .+...|..+..+|...|++++|...|++..+. .| +...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888776543 36677778888888888888888888877655 33 33344444433 23345566
Q ss_pred hhHHHHHHHHHHhh
Q 018882 326 HAKEFQDLVEKMDE 339 (349)
Q Consensus 326 ~a~~~~~~~~~~~~ 339 (349)
.+...+..+....+
T Consensus 317 ~a~~~~~~~l~~~p 330 (338)
T 2if4_A 317 KQKEMYKGIFKGKD 330 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHhhCCCC
Confidence 66667666655544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=9.8e-05 Score=51.36 Aligned_cols=84 Identities=13% Similarity=-0.078 Sum_probs=35.7
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh---
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR--- 215 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 215 (349)
|...+..++|.++|++..+.| +...+..+...|.. .+++++|...|++..+.+ ++..+..|...|..
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKG 108 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCC
Confidence 333334444444444444432 33334444444443 344444444444444433 33334444444443
Q ss_pred -cCChHHHHHHHHHHHhC
Q 018882 216 -AGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 216 -~~~~~~a~~~~~~~~~~ 232 (349)
.+++++|...|+...+.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SCCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHC
Confidence 44444444444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0001 Score=51.31 Aligned_cols=111 Identities=14% Similarity=-0.058 Sum_probs=71.2
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhH
Q 018882 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AFAFDK 81 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 81 (349)
+++++|++.|++..+.| ++... +...|...+.+++|++.|++..+. -+...+..+...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677777777777765 22223 555566666677777777777664 255666666666666 667777
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhc----cCcHHHHHHHHHHHhccC
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSED 128 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 128 (349)
|..+|++..+.| ++..+..|...|.. .++.++|...|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777776664 45556666666665 566677777666666554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.10 E-value=9.5e-05 Score=52.10 Aligned_cols=62 Identities=10% Similarity=-0.111 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhC-------CCCchHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNS-------DIMLDTVFF----NCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.|..+..++...|++++|+..++...+. .+ -+...| .....++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4444444455555555555554444443 32 244455 66666677777777777776666543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.09 E-value=5.3e-05 Score=64.67 Aligned_cols=124 Identities=9% Similarity=0.000 Sum_probs=75.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcC---CCC----chhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCcHHHHHH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYH---YSW----TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-----R--IKPSCVTLCS 243 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 243 (349)
+...|++++|..++++..+.. +.+ ...+++.|...|...|++++|..++++..+. | .+-...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446777777777776664321 111 2456777777777777877777777665431 1 1122355677
Q ss_pred HHHHHHhcCChhhHHHHHHHHhh-----CCCC-c-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDN-----SDIM-L-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
|...|...|++++|..++++..+ .|.. | ...+.+.+..++...+.+++|..++..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766542 2221 1 233445556666677777777777777655
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.1e-05 Score=64.76 Aligned_cols=125 Identities=9% Similarity=-0.133 Sum_probs=94.6
Q ss_pred HHHhcCChHHHHHHHHHHHhC-----C--CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-----CC-Cc-hHHHHH
Q 018882 212 AFGRAGDLKQMEYLFRLMRSE-----R--IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-----DI-ML-DTVFFN 277 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 277 (349)
.+...|++++|..++++..+. | .+....+++.|..+|...|++++|..++++..+. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887642 1 1123467899999999999999999999876531 21 12 345789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-CC-HHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 278 CLVDAYGRLKCFAEMKGVLEVMQQR-----GCK-PD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~-----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
.|...|...|++++|..++++..+. |.. |+ ..+...+-.++...|.+++|+..+..+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987643 322 22 33455666778889999999999988865
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.3e-05 Score=51.78 Aligned_cols=81 Identities=16% Similarity=0.078 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 018882 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSD 88 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 88 (349)
++|++.|++..+.. +.+...+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35677777777653 4467778888888888888888888888887653 45567778888888888888888888887
Q ss_pred HHhc
Q 018882 89 MSTQ 92 (349)
Q Consensus 89 ~~~~ 92 (349)
....
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=4.5e-05 Score=50.55 Aligned_cols=89 Identities=7% Similarity=-0.125 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------HHH
Q 018882 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-------KVT 310 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~~ 310 (349)
...+..+...+...|++++|...++...+... .+...+..+..++...|++++|...+++..... |+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 34455555666666666666666666655432 245556666666666666666666666666542 32 334
Q ss_pred HHHHHHHHHhcCchhhhHH
Q 018882 311 YRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~ 329 (349)
+..+..++...|+.+.|.+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHhHhhhHh
Confidence 4455555555555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00011 Score=49.09 Aligned_cols=81 Identities=12% Similarity=0.005 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 220 KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 299 (349)
+.|...++...+.. +.+...+..+...+...|++++|...++...+... .+...|..+..+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35777888887654 45678888899999999999999999999887654 35778888999999999999999999988
Q ss_pred Hhc
Q 018882 300 QQR 302 (349)
Q Consensus 300 ~~~ 302 (349)
...
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0001 Score=48.74 Aligned_cols=59 Identities=14% Similarity=0.023 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
+..+...+...|++++|...|++..+..+. +...+..+..++...|++++|...++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333444444444444444444444433221 33444444444444444444444444444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=2.2e-05 Score=55.20 Aligned_cols=96 Identities=9% Similarity=0.058 Sum_probs=62.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCh----------hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLF----------DKAFSLLEHMKNTPDCQPDVNTYSILIKSCL 74 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 74 (349)
.+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++..+.. +.+..+|..+..+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHH
Confidence 355777888888777764 45677777777777776654 47777777777653 445667777777776
Q ss_pred hcC-----------ChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 75 KAF-----------AFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 75 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
..| ++++|.+.|++..+. .|+...|...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 653 666777777766665 45544444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00034 Score=44.18 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=7.9
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 018882 208 IVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~ 228 (349)
.+...+...|++++|...+++
T Consensus 48 ~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 48 NLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 333333333333333333333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00038 Score=43.93 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 018882 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3445555555666666666666666665543 224555666666666666666666666666554322 34444444444
Q ss_pred H
Q 018882 213 F 213 (349)
Q Consensus 213 ~ 213 (349)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=8.7e-05 Score=52.18 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL-----------KCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 316 (349)
+++|+..|++..+..+. +...|..+..+|... |++++|.+.|++..+. .|+...|...+.
T Consensus 62 ~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34666666666655432 455566666666655 4788888888888776 556555544444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00034 Score=45.42 Aligned_cols=67 Identities=10% Similarity=-0.018 Sum_probs=54.3
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+-+...+..+...+...|++++|...++.+.+..+. +...|..+..+|...|++++|...|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345677888888899999999999999988876543 5678888899999999999999998887754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00028 Score=45.83 Aligned_cols=64 Identities=19% Similarity=0.059 Sum_probs=36.2
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 91 (349)
+...+..+..++...|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555555566666666666666666655542 33444555555666666666666666555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00045 Score=58.01 Aligned_cols=102 Identities=15% Similarity=0.041 Sum_probs=58.0
Q ss_pred HHHHhcCChhhHHHHHHHHhhCC---CC----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHHH
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNSD---IM----LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-----G-CKPD-KVTY 311 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~ 311 (349)
..+...|++++|..+++...+.. +. ....+++.+..+|...|++++|..++++.... | -.|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445566666666666654321 11 12345666666666667776666666655432 1 1122 3445
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHhhhhhccCCC
Q 018882 312 RTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRP 347 (349)
Q Consensus 312 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~p 347 (349)
+.|...|...|++++|..++++..++.....++++|
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 666666666777777777666666666665555554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00019 Score=60.23 Aligned_cols=99 Identities=8% Similarity=0.004 Sum_probs=70.1
Q ss_pred hcCChhhHHHHHHHHhhC-----CC-Cc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHHHHHHH
Q 018882 250 HAGKPEKLGSVLRFIDNS-----DI-ML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-----G-CKPD-KVTYRTMV 315 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~l~ 315 (349)
..|++++|..++++..+. |. .| ...+++.|..+|...|++++|..++++.... | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346778888887765431 11 12 2456788888888888888888888877643 2 1233 35678888
Q ss_pred HHHHhcCchhhhHHHHHHHHHHhhhhhccCCCC
Q 018882 316 RAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD 348 (349)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~p~ 348 (349)
..|...|++++|..++++..++.....++.+|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 888888888888888888888888777777663
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0049 Score=49.87 Aligned_cols=144 Identities=8% Similarity=-0.050 Sum_probs=86.6
Q ss_pred CCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh---cC--ChHHHH---HHHHHHH
Q 018882 164 IQPSINTFNILLDSYGK--AG---HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR---AG--DLKQME---YLFRLMR 230 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~a~---~~~~~~~ 230 (349)
.+.+...|..++++... .+ +..+|..+|++..+..+. ....|..+..++.. .+ ...... ..++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 35566777777765442 22 346788888888776532 33444443333321 11 101111 1111111
Q ss_pred h-CCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 018882 231 S-ERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309 (349)
Q Consensus 231 ~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 309 (349)
. ...+.+..++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 1 1224566777777666666788888888888888765 56677777788888888888888888888776 45555
Q ss_pred HHH
Q 018882 310 TYR 312 (349)
Q Consensus 310 ~~~ 312 (349)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0049 Score=49.88 Aligned_cols=66 Identities=6% Similarity=-0.089 Sum_probs=38.5
Q ss_pred CCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+...|++++|.+.+++....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3355555555555555566666666666666553 45555555555666666666666666665554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0015 Score=42.04 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=37.5
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCchHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTV-FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
...+...|++++|...++.+.+... .+.. .+..+..+|...|++++|...|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4455666777777777777665543 2445 6666777777777777777777777665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0024 Score=53.58 Aligned_cols=88 Identities=10% Similarity=-0.101 Sum_probs=67.0
Q ss_pred hcCChHHHHHHHHHHHhC---CCC----CcHHHHHHHHHHHHhcCChhhHHHHHHHHhh-----CCC-Cc-hHHHHHHHH
Q 018882 215 RAGDLKQMEYLFRLMRSE---RIK----PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN-----SDI-ML-DTVFFNCLV 280 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~li 280 (349)
..|++++|..++++..+. -.. ....+++.+..+|...|++++|..++++..+ .|. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887542 111 2246788999999999999999999987653 221 23 345788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 018882 281 DAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
..|...|++++|..++++..+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999987654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0059 Score=56.04 Aligned_cols=130 Identities=14% Similarity=0.023 Sum_probs=67.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
..++..+.+.|.++.|.++.+. |. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5555556666666666554421 10 1122334567777776664332 2566777777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
++++.|.+.|..+.. |..+...+...|+.+...++.+.....|. ++....+|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776532 22333334445555555554444444332 122233344455555555555
Q ss_pred HHH
Q 018882 297 EVM 299 (349)
Q Consensus 297 ~~m 299 (349)
.++
T Consensus 760 ~~~ 762 (814)
T 3mkq_A 760 IKS 762 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0052 Score=51.62 Aligned_cols=93 Identities=11% Similarity=-0.100 Sum_probs=71.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC---CCC----cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-----CC-Cc-hHHH
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRSER---IKP----SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-----DI-ML-DTVF 275 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~ 275 (349)
+..+.+.|++++|..++++..+.. ..| ...+++.+..+|...|++++|+.+++++... |. .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667899999999999887531 112 2467888999999999999999999876531 21 12 3457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 276 FNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
++.|...|...|++++|..++++..+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999887653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0059 Score=38.79 Aligned_cols=68 Identities=7% Similarity=-0.009 Sum_probs=47.1
Q ss_pred CCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 235 KPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 303 (349)
+.+...+..+..++...++ .++|..+++...+... -++.....+...+.+.|++++|...|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455666666666654444 5777777777777654 366677777777788888888888888877763
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.011 Score=41.05 Aligned_cols=82 Identities=15% Similarity=0.010 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC---ChhhHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhcCCHHHHH
Q 018882 219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG---KPEKLGSVLRFIDNSDIML--DTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 293 (349)
...+.+-|.+..+.+ +++..+...+..++++++ +.+++..+++.+.+.. .| +...+-.+..+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344555565555555 367777777778888877 4557888888777654 23 3455556777788888888888
Q ss_pred HHHHHHHhc
Q 018882 294 GVLEVMQQR 302 (349)
Q Consensus 294 ~~~~~m~~~ 302 (349)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888876
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0071 Score=38.40 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=40.1
Q ss_pred CCChhhHHHHHHHHHcCCC---hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 24 DANTQSFTALLSAYGRSGL---FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
+.++..+..+..++...++ .++|..++++..+.. +-+..+...+...+.+.|++++|...|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455556666655543333 566666666666553 445556666666666666666666666666665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.063 Score=41.81 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc-CCh
Q 018882 149 IDTMEKCYEKFQSAGIQPS---INTFNILLDSYGKA-----GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-GDL 219 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 219 (349)
...|...+++..+. .|+ ...|..+...|.+. |+.++|...|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777775 344 56788888888874 88888888888888876433477777778888774 888
Q ss_pred HHHHHHHHHHHhCCCC--CcHHHHH
Q 018882 220 KQMEYLFRLMRSERIK--PSCVTLC 242 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~--~~~~~~~ 242 (349)
+.+...+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888876555 5544433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.046 Score=36.82 Aligned_cols=150 Identities=11% Similarity=0.114 Sum_probs=89.9
Q ss_pred hhHHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 28 QSFTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 28 ~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
.....|+.+ +.-.|..++..++..+..+. .+..-||-++--....-+-+-..++++..-+. -|..
T Consensus 6 el~kkLmeAK~~ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis------ 72 (172)
T 1wy6_A 6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD------ 72 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH------
Confidence 344555555 55678888888888887764 35566666666666666666666666655432 1221
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (349)
.+|+.......+-.+ ..+.......+......|.-++..+++..+... .+|++...-.+..+|.+.|+..
T Consensus 73 ----~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r 142 (172)
T 1wy6_A 73 ----KCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDER 142 (172)
T ss_dssp ----GCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHH
T ss_pred ----hhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchh
Confidence 223333333333222 122334455566666777777777777775443 3566777777777777777777
Q ss_pred HHHHHHHHHHhcCCC
Q 018882 186 KMSAVMEYMQKYHYS 200 (349)
Q Consensus 186 ~a~~~~~~~~~~~~~ 200 (349)
++.+++.+.-+.|++
T Consensus 143 ~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 143 DATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhH
Confidence 777777777776643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.019 Score=36.63 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=23.5
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSIN-TFNILLDSYGKAGHFEKMSAVMEYMQKY 197 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (349)
+...|++++|...++++.+.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344444444444444444432 11333 4444444444444444444444444433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.012 Score=40.84 Aligned_cols=86 Identities=8% Similarity=-0.094 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCchhhhH
Q 018882 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK---CFAEMKGVLEVMQQRGCKP--DKVTYRTMVRAYSTNGMKNHAK 328 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 328 (349)
...+.+-|......+. ++..+...+..++++.+ +.+++..+|++..+.+ .| +...+..+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666666666555 67888888999999988 6679999999999874 24 3556677777899999999999
Q ss_pred HHHHHHHHHhhhh
Q 018882 329 EFQDLVEKMDETC 341 (349)
Q Consensus 329 ~~~~~~~~~~~~~ 341 (349)
++++.+.++++.-
T Consensus 92 ~y~~~lL~ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCCC
Confidence 9999999988743
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.038 Score=50.65 Aligned_cols=102 Identities=8% Similarity=-0.002 Sum_probs=72.3
Q ss_pred HHHHccCCHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 018882 141 RAFGNSGQIDTMEK-CYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL 219 (349)
Q Consensus 141 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (349)
......+++++|.+ ++.. + ++......++..+.+.|.++.|.++.+.- . .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCH
Confidence 44456788888866 4422 1 11223377788888999999988766321 1 112334678999
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 220 KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
+.|.++.+.+ .+...|..+.+.+.+.++++.|.+.|..+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 9999986543 4668999999999999999999999998764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.038 Score=35.78 Aligned_cols=61 Identities=8% Similarity=-0.038 Sum_probs=26.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAG------IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
+..+...+...|++..|...++...+.- -.+...++..+..++.+.|+++.|...++++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344444444444444444444433320 012333444444555555555555555554444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.055 Score=37.24 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=43.0
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 316 (349)
.+++++|.++|+.+.+..-.. ...|-....--.+.|+...|.+++......+.+| ...+...++
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 367888888888776543333 6666666666777888888888888888776554 333444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.12 Score=36.86 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=54.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34566666666665544 1456666666666666666666666665431 23333344555666555
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
.++-+.....|- ++.....+.-.|+++++.++|.
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 555444444331 2333344555666666666654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.11 Score=37.15 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=22.3
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHH
Q 018882 73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKM 124 (349)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 124 (349)
....|+++.|.++.+.+ -+...|..|.......|+++-|.+.|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 33445555555444433 13445555555555555555555555444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.025 Score=36.70 Aligned_cols=71 Identities=6% Similarity=-0.088 Sum_probs=57.9
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC------CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 018882 236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS------DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308 (349)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 308 (349)
.+......+...+...++++.|...++.+.+. .-.+...++..+..+|.+.|+++.|...+++.... .|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 45566778899999999999999999887653 12346788999999999999999999999999876 4543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.12 Score=35.69 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 018882 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML 271 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 271 (349)
++.++|.++|+.++..+-.. ...|....+--.+.|+...|.+++......+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56677777777665442222 5555555555566777777777777777666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.047 Score=36.48 Aligned_cols=85 Identities=14% Similarity=0.009 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh---HHHHHHHHhhCCCC-chHHHHHHHHHHHHhcCCHHHH
Q 018882 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK---LGSVLRFIDNSDIM-LDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a 292 (349)
.....+.+-|......| .++..+-..+..++.++.+... ++.+++.+.+.+.+ -.....-.|.-++.+.|+++.|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555565555545 3677777778888888887665 77788877765421 2344555677788899999999
Q ss_pred HHHHHHHHhc
Q 018882 293 KGVLEVMQQR 302 (349)
Q Consensus 293 ~~~~~~m~~~ 302 (349)
.+.++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999888876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.11 Score=40.40 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=66.2
Q ss_pred hhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc-Cc
Q 018882 43 FDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLK-----AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA-KM 113 (349)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 113 (349)
...|...+++..+. .|+ ...|..+...|.. .|+.++|.+.|++..+.+..-+..++......+++. |+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 34677777777766 355 5678888888888 488889999998888874322477777788888874 88
Q ss_pred HHHHHHHHHHHhccCCC--cchhhHH
Q 018882 114 FAEMELTLVKMLSEDCE--PDVWTMN 137 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~--~~~~~~~ 137 (349)
.+++.+.+++....... |+....+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888888876544 4443333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.18 Score=34.08 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=95.4
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHH
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (349)
..-.|..++..++..+..... +..-||.+|.-....-+-+-..++++.+-+. .|. ...|+....
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 445688888888888877653 5556677776666666666666666665432 121 234555555
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
...+-.+ ..+...+...+..+...|+-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..+.
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5555433 123455666677788888888888888886543 3567788888888899999999999998888888
Q ss_pred CCC
Q 018882 303 GCK 305 (349)
Q Consensus 303 ~~~ 305 (349)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.74 Score=38.85 Aligned_cols=255 Identities=7% Similarity=0.041 Sum_probs=139.8
Q ss_pred CChHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH----Hhc
Q 018882 6 KQPEKAHELFQAMVDE-----GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC----LKA 76 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~ 76 (349)
|+++.|++.+-.+.+. +..........++..|...|+++...+.+..+.+..+..+ .....+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 6677888777666543 2223455677888889999999988888877766544222 2223333322 233
Q ss_pred CChhHHH--HHHHHHHh--cC-CCC---chHHHHHHHHHHhccCcHHHHHHHHHHHhcc--CCCc---chhhHHHHHHHH
Q 018882 77 FAFDKVQ--ALLSDMST--QG-IRP---NTVTYNTLIDAYGRAKMFAEMELTLVKMLSE--DCEP---DVWTMNCTLRAF 143 (349)
Q Consensus 77 ~~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~ 143 (349)
...+... .+.+.+.. .| +-. .......|...+...|++.+|.+++..+... +... -...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3333211 11111111 01 111 1223456778888889999999999887643 2111 135667778888
Q ss_pred HccCCHHHHHHHHHHHHh----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCchhhHH----HHHHH
Q 018882 144 GNSGQIDTMEKCYEKFQS----AGIQPS--INTFNILLDSYGKAGHFEKMSAVMEYMQKY-HYSWTIVTYN----IVIDA 212 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~ 212 (349)
...+++..|..++.++.. ...+|+ ...+...+..+...+++.+|...|.++... ...-+...+. .++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 899999999988887642 222222 234666777788889998888887766432 1111222221 11111
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc--CChhhHHHHHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA--GKPEKLGSVLR 262 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~ 262 (349)
..-.+..+.-..++.........++...+..++.+|... .+++.+...+.
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 112222222223333332222235667788888887653 23444444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.19 Score=33.58 Aligned_cols=82 Identities=9% Similarity=-0.060 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHH---HHHHHHHHhccCCCc--chhhHHHHHHHHHccCCHHHHH
Q 018882 79 FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE---MELTLVKMLSEDCEP--DVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
...+.+-|......|. ++..+-..+..++.++..... ++.+++.+...+ .| .....-.+.-++.+.|+++.|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444444444444332 455555555556665554433 556666655543 12 2223334444555666666666
Q ss_pred HHHHHHHhc
Q 018882 154 KCYEKFQSA 162 (349)
Q Consensus 154 ~~~~~~~~~ 162 (349)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.07 E-value=3.8e-05 Score=63.57 Aligned_cols=245 Identities=13% Similarity=0.135 Sum_probs=159.0
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
.+.+|..|..+....+++.+|++.|-+ ..|+..|..++.+..+.|.+++....+...++.. .++..=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 466788899998888988888876632 2345567788999999999999998887766653 2445556888
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc--------------------CCC
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--------------------GIQ 165 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~ 165 (349)
-+|++.++..+..+++ ..|+..-...+..-|...|.++.|.-+|..+... .-.
T Consensus 124 ~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998865533322 1244444445555555555555554444333211 113
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
.++.||..+-.+|...+++.-|...--.+.- .......++..|-..|.+++.+.+++...... +....+|+.|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 4677888888889888887766554433332 22233456667788888999888888876433 46778888888
Q ss_pred HHHHhcCChhhHHHHHHHHhhC-CCCc------hHHHHHHHHHHHHhcCCHHHHH
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNS-DIML------DTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~li~~~~~~g~~~~a~ 293 (349)
-.|++- ++++..+.++....+ +++- ....|..++-.|.+-.+++.|.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 777764 566666665554332 2211 2446777777777777777664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.97 E-value=2.3 Score=39.40 Aligned_cols=259 Identities=9% Similarity=-0.026 Sum_probs=127.2
Q ss_pred HHHcCCChhHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-------CCchHHHHHHHHH
Q 018882 36 AYGRSGLFDKAFSLLEHMKNTP-DCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI-------RPNTVTYNTLIDA 107 (349)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 107 (349)
+....|+.++++.++....... .-.+....=..+.-+.+..|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556777777777777665421 1022233333444455555555566666665544311 0112222222233
Q ss_pred HhccCc-HHHHHHHHHHHhccCCCcch--hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcC
Q 018882 108 YGRAKM-FAEMELTLVKMLSEDCEPDV--WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS--YGKAG 182 (349)
Q Consensus 108 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 182 (349)
++-.|. -+++...+..+.... .+.. ..-..+...+.-.|+.+....++..+.+.. +..+...+..+ +...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333332 234555555554332 1111 111223334556677776677776665532 22333333333 33567
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018882 183 HFEKMSAVMEYMQKYHYSWTIVTYN--IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV 260 (349)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (349)
+.+.+..+.+.+.... .|....-. ++..+|+..|+......++..+.... ..+......+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7777777777766532 22222222 23345667777766666777776532 22333333333444456666667777
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 018882 261 LRFIDNSDIMLDTVFFNCLVDAYGRLKCF-AEMKGVLEVMQQ 301 (349)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 301 (349)
++.+.+.+ .|....-..+.-+....|.. .++..++..+..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 76665543 34444444444444444443 456667776654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.94 E-value=4.5e-05 Score=63.18 Aligned_cols=248 Identities=14% Similarity=0.105 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018882 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
...|..+..+..+.+.+.+|++.| ++. -|+..|..++.+..+.|.+++-.+.+...++..-.|. .=+.++-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHH
Confidence 456888999999998888887655 332 2677889999999999999999998887776643443 44689999
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------------CCCc
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH--------------------YSWT 202 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~ 202 (349)
|++.++..+.++++ ..|+..-...+.+-|...|.++.|.-+|..+.... -..+
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999877654433 23555556677777888888877777766543211 0236
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
+.||..+-.+|...+++.-|...--.++-. | .-...++..|-..|.+++.+.+++...... .....+|+.|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 788999999999999888776665544421 2 123346677888999999999998877543 3578899999988
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHh
Q 018882 283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
|++- ++++.++-++..-.+ .| --.+|++|.+.--|.++.-++....+.+
T Consensus 273 YsKY-~PeKlmEHlklf~sr---iN---ipKviracE~ahLW~ElvfLY~~ydE~D 321 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSR---VN---IPKVLRAAEQAHLWAELVFLYDKYEEYD 321 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSS---SC---CTTTHHHHTTTTCHHHHHHHHHHHTCHH
T ss_pred HHhc-CHHHHHHHHHHHHHh---cc---HHHHHHHHHHHhhHHHHHHHHhcchhHH
Confidence 9886 344444444332211 11 1134556666666665555555444433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.42 E-value=3.1 Score=38.50 Aligned_cols=295 Identities=9% Similarity=0.003 Sum_probs=156.8
Q ss_pred HHHHHHHHcCCChhHH-HHH-HHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch--HHHHHHHH
Q 018882 31 TALLSAYGRSGLFDKA-FSL-LEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYNTLID 106 (349)
Q Consensus 31 ~~l~~~~~~~~~~~~a-~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 106 (349)
..+..++...|--.+. +.. .+++.+. .+....-.+.--+.+..|+.+++..+++.....+-..+. ..=..+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~---~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA---QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC---CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc---chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 3566777777754332 221 2344432 222233334445677889999998888776652111222 23233444
Q ss_pred HHhccCcHHHHHHHHHHHhccCC-------CcchhhHHHHHHHH--HccCCHHHHHHHHHHHHhcCCCCCHHHHH--HHH
Q 018882 107 AYGRAKMFAEMELTLVKMLSEDC-------EPDVWTMNCTLRAF--GNSGQIDTMEKCYEKFQSAGIQPSINTFN--ILL 175 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~ 175 (349)
+.+..|...++..++.......- .+....-..+.-+. .-.++ +++.+.+..+.... .+...... ++.
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALG 497 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMG 497 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHh
Confidence 55666666678887777664321 12222223333333 33444 34555555555432 11111122 233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH--HHHHHHHHHhcCC
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT--LCSLVRAYGHAGK 253 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 253 (349)
..+.-.|+.+....++..+.+.. .-+..-...+.-++...|+.+.+..+.+.+.... .|.... ...+.-+|+..|+
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 33456678887788887776542 2122223333344557889999999988887642 233222 2234556778889
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch-hhhHHHHH
Q 018882 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK-NHAKEFQD 332 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~ 332 (349)
.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|..+.-..+.-+....|.. ..+...+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 887777888887643 2344444444445556777777777777666543 34444444444444545543 23444444
Q ss_pred HH
Q 018882 333 LV 334 (349)
Q Consensus 333 ~~ 334 (349)
.+
T Consensus 654 ~L 655 (963)
T 4ady_A 654 PL 655 (963)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.24 Score=40.94 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHHHHH
Q 018882 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ-----RGCKPDKVTYRTM 314 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 314 (349)
...++..+...|+++++...+..+....+ .+...|..++.++.+.|+..+|++.|+...+ .|+.|...+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44566677778888888877777766543 4777888888888888888888888877654 3888877664433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.23 E-value=3.5 Score=39.58 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=29.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 018882 32 ALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 89 (349)
.++..+...+.++-+.++..... .+...--.+..++...|++++|..+|.+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34555556666666655544332 23333334556677777777777777654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.62 Score=41.97 Aligned_cols=54 Identities=13% Similarity=-0.044 Sum_probs=37.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
...+...|+++-|+.+-++....- +.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 444556777777777777776543 444677777777777777777777777665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.25 Score=40.87 Aligned_cols=72 Identities=11% Similarity=0.007 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhc-----cCCCcchhhHH
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS-----EDCEPDVWTMN 137 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 137 (349)
+...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34556677778888888888888877663 55777888888888888888888888887654 27788776544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.85 Score=41.08 Aligned_cols=127 Identities=9% Similarity=0.064 Sum_probs=68.4
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCC-HHHHHHHHHHHHhc------CCCC-CH----
Q 018882 102 NTLIDAYGRAKM-FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQ-IDTMEKCYEKFQSA------GIQP-SI---- 168 (349)
Q Consensus 102 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~---- 168 (349)
..++..+...++ .+.|..+++++.......+......++..+...++ --+|.+++.+..+. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555555 46677777777765322222222233333333322 22344444443321 1111 11
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 169 ------NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 169 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
.....=.+.+...|+++.|+.+-++.....+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 01111234455677888888888777765432 5778888888888888888888777765
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.82 E-value=4.9 Score=38.60 Aligned_cols=194 Identities=8% Similarity=-0.020 Sum_probs=119.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC---------------
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY----HY--------------- 199 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--------------- 199 (349)
++..+...+.++.+.++..- .+.+...--.+..++...|++++|...|.+.... ..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 33444455555555443322 2234444456677889999999999999764210 00
Q ss_pred ---CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch
Q 018882 200 ---SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD 272 (349)
Q Consensus 200 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (349)
..-..-|..++..+.+.+.++.+.++-+...+.....+ ...|..+.+++...|++++|...+-.+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 00123467788888899999999988877665422211 236888999999999999999999887765443
Q ss_pred HHHHHHHHHHHHhcCCHH------------HHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCchhhhHH-HHHHHHHH
Q 018882 273 TVFFNCLVDAYGRLKCFA------------EMKGVLEVMQQR--GCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDLVEKM 337 (349)
Q Consensus 273 ~~~~~~li~~~~~~g~~~------------~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~ 337 (349)
......|+..++..|..+ +..+++..-.+. .+...+.-|..|-.-+...|++..|.+ +++.+.++
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 456667777777665544 444444332221 111122335555555677777776655 66777777
Q ss_pred hh
Q 018882 338 DE 339 (349)
Q Consensus 338 ~~ 339 (349)
..
T Consensus 1051 ~~ 1052 (1139)
T 4fhn_B 1051 IS 1052 (1139)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.80 E-value=0.97 Score=30.40 Aligned_cols=69 Identities=7% Similarity=-0.065 Sum_probs=48.9
Q ss_pred CCCcHHHHHHHHHHHHhcCCh---hhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 234 IKPSCVTLCSLVRAYGHAGKP---EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
-.|+..+-..+..++.++.+. ..++.+++.+.+.+..-....+-.|.-++.+.|+++.|.+..+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 356667767777777777664 356777777766553234556666777888888888888888888876
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.56 E-value=0.84 Score=28.90 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=26.9
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555555566666666666666666666666666555544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=92.27 E-value=1.7 Score=29.19 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=29.4
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+..+-++.+....+.|++.+....+++|-+.+++..|.++|+-.+.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455555555566666666666666666666666666666666554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.09 E-value=1.3 Score=31.12 Aligned_cols=64 Identities=8% Similarity=0.074 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-------NTYSILIKSCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 91 (349)
..+-.-+..+...|.++.|+-+.+.+....+..|+. .++..+..++...+++.+|...|++..+
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344555677888899999888887765443223442 3456677888889999999999988644
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.74 E-value=5.3 Score=33.64 Aligned_cols=259 Identities=10% Similarity=0.081 Sum_probs=147.7
Q ss_pred CChhHHHHHHHHhhc----CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCchHH--HHHHHHHHhccCc
Q 018882 41 GLFDKAFSLLEHMKN----TPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRPNTVT--YNTLIDAYGRAKM 113 (349)
Q Consensus 41 ~~~~~a~~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--~~~l~~~~~~~~~ 113 (349)
|+++.|++.+-.+.+ .............++..|...++++...+.+.-+.+. |..+...+ .+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 677888877755543 2223455677888999999999999988877766544 43333222 1222222222222
Q ss_pred HH--HHHHHHHHHhc--cC-CCc---chhhHHHHHHHHHccCCHHHHHHHHHHHHhc--CCCCC---HHHHHHHHHHHHh
Q 018882 114 FA--EMELTLVKMLS--ED-CEP---DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--GIQPS---INTFNILLDSYGK 180 (349)
Q Consensus 114 ~~--~a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 180 (349)
.+ .-..+.+.... .| +-. .......+...+...|++.+|.+++..+... |.... ...+..-++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 22222222211 11 111 2233466788899999999999999998643 22111 3456777889999
Q ss_pred cCCHHHHHHHHHHHHh----cCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCcHHHH----HHHHHHHH
Q 018882 181 AGHFEKMSAVMEYMQK----YHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-RIKPSCVTL----CSLVRAYG 249 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~----~~l~~~~~ 249 (349)
.+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.++... ....+...+ ..++.+..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999988743 222222 245666777788899999998888776532 111122211 22222222
Q ss_pred hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q 018882 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--KCFAEMKGVLEVM 299 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m 299 (349)
-.+....-..++.........++...|..++.+|... .+++.+.+.|...
T Consensus 270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 2222222223333332222235777888899988764 3566666555443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.14 E-value=1.7 Score=29.20 Aligned_cols=72 Identities=7% Similarity=-0.121 Sum_probs=53.8
Q ss_pred CCchHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 269 IMLDTVFFNCLVDAYGRLKCF---AEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
..|+..+--.+..++.+..+. .+++.+++++.+.+..-....+-.+.-++.+.|+++.|.++.+.+.++++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 346666666677778777654 568889999887752223555667777999999999999999999887764
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.13 E-value=1.9 Score=27.33 Aligned_cols=46 Identities=11% Similarity=0.250 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555555556666666666666666666666666655543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=7.8 Score=34.23 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (349)
.-+..+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-..| ......+..++..+.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~ 147 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWR 147 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHH
Confidence 334556667777777766654432 23355555556677777788777777666665554 344556677777777
Q ss_pred ccCCH
Q 018882 145 NSGQI 149 (349)
Q Consensus 145 ~~~~~ 149 (349)
+.|..
T Consensus 148 ~~g~l 152 (618)
T 1qsa_A 148 ASGKQ 152 (618)
T ss_dssp HTTCS
T ss_pred HCCCC
Confidence 65544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.97 E-value=3.3 Score=28.25 Aligned_cols=73 Identities=7% Similarity=-0.052 Sum_probs=55.8
Q ss_pred CCCCcHHHHHHHHHHHHhcCChh---hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018882 233 RIKPSCVTLCSLVRAYGHAGKPE---KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 307 (349)
+-.|+..+-..+..++.++.+.+ +++.+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+.+. .|+
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 33677788888888888887754 67778888776554335556667888899999999999999999987 554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.80 E-value=5.5 Score=33.39 Aligned_cols=96 Identities=7% Similarity=-0.163 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCcHHH--HH
Q 018882 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHY--SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS---ERIKPSCVT--LC 242 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~--~~ 242 (349)
+...+...|.+.|+++.|.+.+.++..... ..-...+-..++.+...+++..+...+.++.. .+..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556778888888888888888888875432 22356667777778888888888888877643 222222211 11
Q ss_pred HHHHHHHhcCChhhHHHHHHHHh
Q 018882 243 SLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
.-...+...+++..|...|-...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHh
Confidence 11222345566776666665543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.66 E-value=4.3 Score=27.73 Aligned_cols=69 Identities=10% Similarity=-0.065 Sum_probs=44.9
Q ss_pred CCchhhHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018882 200 SWTIVTYNIVIDAFGRAGDL---KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
.|+..+--.+.-++.++.+. .+++.+++.+...+..-.....-.+.-++.+.|++++|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45666666666666666644 4567777777664422233444456667888888888888888887754
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.59 E-value=4.1 Score=27.45 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 018882 152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
..+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+-++..- .+....|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 44445555555566666666666666666666666666666665432 12233454444
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.41 E-value=8.6 Score=32.18 Aligned_cols=59 Identities=8% Similarity=-0.139 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCchHHHHHHHHHHhccCcHHHHHHHHHHH
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMSTQ--GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKM 124 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 124 (349)
...+...+.+.|+++.|.+.+.++... +...-...+-.+++.+...+++..+...+.+.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344455555555555555555555443 12222334444555555555555555555444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.07 E-value=2.3 Score=32.70 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=25.8
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
+.+.|+++++++....-.+.. |.|...-..++..+|-.|++++|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344455555555444443332 344444445555555555555555544444443
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=85.29 E-value=5.1 Score=30.82 Aligned_cols=19 Identities=32% Similarity=0.176 Sum_probs=10.4
Q ss_pred HHHHHHcCCChhHHHHHHH
Q 018882 33 LLSAYGRSGLFDKAFSLLE 51 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~ 51 (349)
.+...++.|+++....+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3444556677665555554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.67 E-value=13 Score=29.41 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=16.5
Q ss_pred HHHhcCchhhhHHHHHHHHHHh
Q 018882 317 AYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
-|...|+...|..+++.+.+.-
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH
Confidence 3556789999999998776543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.52 E-value=8.6 Score=27.08 Aligned_cols=55 Identities=5% Similarity=0.034 Sum_probs=26.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC-CCCc-------hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYH-YSWT-------IVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
+..+...+.++.|+-+.+.+.... ..|+ ..++..+.+++...+++..|...|++.
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444455555555555544432211 1111 124445555556666666666666654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.51 E-value=5.7 Score=25.07 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHH
Q 018882 42 LFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121 (349)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 121 (349)
..++|..+-+.+...+ . ....--+-+..+.+.|++++|..+.+.+. .||...|-.|-. .+.|..+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 4566666666665542 1 22222233445666677777665544332 566666655433 3556666666666
Q ss_pred HHHhccCCCcchhhHH
Q 018882 122 VKMLSEDCEPDVWTMN 137 (349)
Q Consensus 122 ~~~~~~~~~~~~~~~~ 137 (349)
..+..+| .|....|.
T Consensus 92 ~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 92 AGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHTCS-SHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 5665555 44444443
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.23 E-value=10 Score=27.70 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCc-hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcc
Q 018882 60 QPDVNTYSILIKSCLK--AFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD 132 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 132 (349)
+-|..-....+...-. .++...+..+|..|...|+-.. +..|......+-..|++.+|..+|+.-++.+-.|-
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4555554444443333 3446677888888877765433 34566666777777888888888888777766663
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.08 E-value=6 Score=24.98 Aligned_cols=78 Identities=6% Similarity=-0.017 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 018882 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYE 157 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 157 (349)
..++|..+-+.+...+. ...+-..-+..+.+.|++++|..+.+... .||...|..+.. .+.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45556655555555432 11111122234455666666665544433 555555544432 35555566665555
Q ss_pred HHHhcC
Q 018882 158 KFQSAG 163 (349)
Q Consensus 158 ~~~~~~ 163 (349)
.+...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.03 E-value=6.1 Score=25.00 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=48.5
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHH
Q 018882 41 GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120 (349)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 120 (349)
...++|..+-+.+...+ . ....--+-+..+.+.|++++|..+.+.+. .||...|-.|-. .+.|..+++...
T Consensus 21 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 34566766666666542 1 22222233455667777777766654433 566666655543 355666666666
Q ss_pred HHHHhccCCCcchhhHH
Q 018882 121 LVKMLSEDCEPDVWTMN 137 (349)
Q Consensus 121 ~~~~~~~~~~~~~~~~~ 137 (349)
+..+..+| .|....|.
T Consensus 92 L~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCC-CHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 66666555 44444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.36 E-value=6.6 Score=24.86 Aligned_cols=79 Identities=9% Similarity=0.017 Sum_probs=39.4
Q ss_pred CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 018882 77 FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
...++|..+-+.+...+. ...+-..-+..+.+.|++++|..+.+... .||...|..+.. .+.|-.+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345566666555555432 11111122234555666666666555443 555555544433 3555555555555
Q ss_pred HHHHhcC
Q 018882 157 EKFQSAG 163 (349)
Q Consensus 157 ~~~~~~~ 163 (349)
..+...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 5555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.75 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.75 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.47 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.44 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.43 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.42 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.41 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.39 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.33 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.31 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.28 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.27 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.99 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.88 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.88 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.84 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.76 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.74 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.72 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.72 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.7 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.65 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.63 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.59 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.57 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.53 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.47 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.36 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.35 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.26 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.26 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.24 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.21 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.14 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.13 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.11 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.09 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.07 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.04 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.0 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.97 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.94 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.94 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.66 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.61 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.56 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.24 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.21 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.09 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.03 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.43 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.14 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.66 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.6 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.37 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.61 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.16 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.7e-22 Score=165.91 Aligned_cols=328 Identities=11% Similarity=-0.017 Sum_probs=262.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
.+.|++++|++.++++.+.. |-++.++..+..++.+.|++++|+..|+++.+.. |.+..++..+..++.+.|++++|
T Consensus 10 ~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhcccccc
Confidence 35799999999999999874 4568889999999999999999999999988763 55678899999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHH----------------------------------HHHhccCcHHHHHHHHHHHhccC
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLI----------------------------------DAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
...+....+.... +........ ......+....+...+.......
T Consensus 87 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 87 IEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC
Confidence 9999998876432 222222222 22222333444444444444332
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 018882 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI 208 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (349)
+.+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++.....+.. +...+..
T Consensus 166 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 242 (388)
T d1w3ba_ 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGN 242 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred -cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHH
Confidence 3345667777888899999999999999988764 346778888999999999999999999998877543 6777888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC
Q 018882 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
+...+.+.|++++|...+++..+.. +-+..++..+...+...|++++|...++....... .+...+..+...+...|+
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhhHHHHHHHHCCC
Confidence 8899999999999999999988764 45577888899999999999999999998877653 577888889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 289 FAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 289 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+++|...|++..+... -+..++..+..+|.+.|++++|.+.+++..++++.
T Consensus 321 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 371 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999887632 25678888999999999999999999988777653
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.3e-20 Score=153.17 Aligned_cols=311 Identities=11% Similarity=0.025 Sum_probs=252.0
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh------
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK------ 75 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~------ 75 (349)
|.+.|++++|++.|++..+.. |.+..+|..+..++.+.|++++|++.+....... +.+.............
T Consensus 43 ~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 119 (388)
T d1w3ba_ 43 HFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccccccccccc--cccccccccccccccccccccc
Confidence 456899999999999999874 4567899999999999999999999999887753 2333333333322222
Q ss_pred ----------------------------cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc
Q 018882 76 ----------------------------AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 76 ----------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.+....+...+....... +-+...+..+...+...|++++|...+++..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 198 (388)
T d1w3ba_ 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198 (388)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHh
Confidence 233334444444444432 335667788888999999999999999998876
Q ss_pred CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 018882 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN 207 (349)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 207 (349)
. +-+...+..+...+...|++++|...+....... +.+...+..+...+.+.|++++|...|++..+..+. +..++.
T Consensus 199 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 275 (388)
T d1w3ba_ 199 D-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYC 275 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHH
T ss_pred C-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 4 4456788889999999999999999999998875 446778888999999999999999999999887643 678899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC
Q 018882 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
.+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+..+ -+..++..+..+|.+.|
T Consensus 276 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 353 (388)
T d1w3ba_ 276 NLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 99999999999999999999987654 66778889999999999999999999999988654 36778899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCc
Q 018882 288 CFAEMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 288 ~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 323 (349)
++++|...|++..+. .| +...|..+..+|.+.||
T Consensus 354 ~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 354 KLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 999999999999876 44 57788999998888775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.5e-15 Score=119.17 Aligned_cols=228 Identities=8% Similarity=-0.046 Sum_probs=129.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 018882 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG 109 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (349)
.-.....+.+.|++++|+..|+++.+.. |-+..+|..+..++...|++++|...+.+..+.. +-+...+..+..+|.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccc
Confidence 3345667889999999999999988764 4567889999999999999999999999988764 336778888888999
Q ss_pred ccCcHHHHHHHHHHHhccCCCcchhhH----------------HHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCHHHHH
Q 018882 110 RAKMFAEMELTLVKMLSEDCEPDVWTM----------------NCTLRAFGNSGQIDTMEKCYEKFQSAGI-QPSINTFN 172 (349)
Q Consensus 110 ~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 172 (349)
..|++++|.+.+++..... |+.... ...+..+...+.+.++...+.+..+... ..+..++.
T Consensus 99 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~ 176 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred ccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccch
Confidence 9999999999999887543 221110 0011111222333344444444333211 12233344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 018882 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG 252 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 252 (349)
.+...+...|++++|...+++.....+. +...|..+...+...|++++|...++...+.. +-+..++..+..+|...|
T Consensus 177 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g 254 (323)
T d1fcha_ 177 GLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLG 254 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCC
Confidence 4444444444444444444444433221 33444444444444444444444444443322 122333444444444444
Q ss_pred ChhhHHHHHHHH
Q 018882 253 KPEKLGSVLRFI 264 (349)
Q Consensus 253 ~~~~a~~~~~~~ 264 (349)
++++|...|+..
T Consensus 255 ~~~~A~~~~~~a 266 (323)
T d1fcha_ 255 AHREAVEHFLEA 266 (323)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.8e-15 Score=121.51 Aligned_cols=223 Identities=14% Similarity=0.040 Sum_probs=182.0
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+.+.|++++|+..|+++.+.. |.+..+|..+..++...|++++|...|++..+.. +-+...+..+..++...|++++
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~ 105 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQ 105 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--cccccccccccccccccccccc
Confidence 346899999999999999874 4568899999999999999999999999988763 4567888899999999999999
Q ss_pred HHHHHHHHHhcCCCCchH----------------HHHHHHHHHhccCcHHHHHHHHHHHhccCC-CcchhhHHHHHHHHH
Q 018882 82 VQALLSDMSTQGIRPNTV----------------TYNTLIDAYGRAKMFAEMELTLVKMLSEDC-EPDVWTMNCTLRAFG 144 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 144 (349)
|.+.++...... |+.. .....+..+...+.+.++...+.+...... ..+...+..+...+.
T Consensus 106 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~ 183 (323)
T d1fcha_ 106 ACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183 (323)
T ss_dssp HHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 999999987752 2211 111122233445677888888888776532 345667888889999
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 018882 145 NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEY 224 (349)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 224 (349)
..|++++|...+++..... +-+..+|..+...+...|++++|...|++..+..+. +..+|..+..+|.+.|++++|..
T Consensus 184 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~ 261 (323)
T d1fcha_ 184 LSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVE 261 (323)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998874 346888999999999999999999999999887533 67889999999999999999999
Q ss_pred HHHHHHh
Q 018882 225 LFRLMRS 231 (349)
Q Consensus 225 ~~~~~~~ 231 (349)
.|++..+
T Consensus 262 ~~~~al~ 268 (323)
T d1fcha_ 262 HFLEALN 268 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998865
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=4.4e-10 Score=90.53 Aligned_cols=302 Identities=11% Similarity=-0.012 Sum_probs=210.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC----CC-CchH
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLKAFAFDKVQALLSDMSTQG----IR-PNTV 99 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~ 99 (349)
.........+...|++++|++++++.....+-.++ ..++..+..++...|++++|...+++..... .. ....
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 34444566688999999999999998775321111 2457778889999999999999999876531 11 1134
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcc----CC--Cc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC----CCCH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSE----DC--EP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI----QPSI 168 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~ 168 (349)
.+..+...+...|++..+...+.+.... .. .+ ....+..+...+...|+++.+...+........ ....
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 5566777888899999999988876542 11 11 223455667788899999999999988776432 2234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CcHH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYH----YSW--TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK---PSCV 239 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ 239 (349)
..+......+...++...+...+....... ..+ ....+......+...|+++.|...+......... ....
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 455666777888999999988887664321 111 1334566677788999999999999887654322 2234
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhh----CCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC----
Q 018882 240 TLCSLVRAYGHAGKPEKLGSVLRFIDN----SDIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKP---- 306 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p---- 306 (349)
.+..+..++...|++++|...++.+.. .+..| ....+..+...|.+.|++++|.+.+++.... |...
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~ 332 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 332 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHH
Confidence 566678899999999999999988753 23333 3457788899999999999999999887543 3221
Q ss_pred CHHHHHHHHHHHHhcCchhhhHH
Q 018882 307 DKVTYRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~ 329 (349)
....+..++..+...+..+++.+
T Consensus 333 ~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 333 EGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp THHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHH
Confidence 22345556667777777776654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.5e-10 Score=91.70 Aligned_cols=215 Identities=9% Similarity=0.026 Sum_probs=148.5
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
..+++.+...+.+.+.+++|++.++++.+.. |-+..+|+....++...+ ++++|...++...+.. +-+..+|+.+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~ 119 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence 4456667777778888888888888888763 556677888887777765 5788888888887764 33677888888
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH-- 183 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 183 (349)
..+.+.|++++|+..++++.+.. +.+...|..+...+...|++++|++.++++++.. +.+...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc
Confidence 88888888888888888888764 4567778888888888888888888888888774 3366677766666665554
Q ss_pred ----HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CcHHHHHHHHHHH
Q 018882 184 ----FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK-PSCVTLCSLVRAY 248 (349)
Q Consensus 184 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 248 (349)
+++|...+....+..+. +...|+.+...+.. ...+++...++...+.... .+...+..++..+
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 46777777777666533 56666666555433 3456666666666543222 2333444444444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.8e-10 Score=90.09 Aligned_cols=217 Identities=8% Similarity=-0.046 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC-cHHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018882 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTMNCTLR 141 (349)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (349)
...++.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|+..+++..+.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 4567777778888999999999999999984 336678888888888776 5899999999998775 556788999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC---
Q 018882 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD--- 218 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 218 (349)
.+.+.|++++|+..++++.+.. +.+...|..+...+...|++++|...++.+.+.++. +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 9999999999999999999875 447899999999999999999999999999988754 77888887777766655
Q ss_pred ---hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-chHHHHHHHHHHHHh
Q 018882 219 ---LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM-LDTVFFNCLVDAYGR 285 (349)
Q Consensus 219 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 285 (349)
+++|...+....+.. +.+...|..+...+.. ...+++...++...+.... .+...+..++..|..
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 567888888877664 4566777777665544 4467788888777654332 245566666666644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=1.3e-10 Score=91.91 Aligned_cols=188 Identities=6% Similarity=-0.029 Sum_probs=132.0
Q ss_pred cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 113 MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
..++|..+|++..+...+.+...|...+....+.|+++.|..+|+++.+........+|...+..+.+.|+.+.|..+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45677778887776544455566777777777888888888888888765433334567778888888888888888888
Q ss_pred HHHhcCCCCchhhHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CC
Q 018882 193 YMQKYHYSWTIVTYNIVIDA-FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-IM 270 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 270 (349)
.+.+.+.. +...|...... +...|+.+.|..+|+.+.... +.+...|...+......|+.+.|..+|+...... ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 87766533 34444443332 334577888888888877653 4556778888888888888888888888876643 22
Q ss_pred ch--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 271 LD--TVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 271 ~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
|+ ...|...+..-...|+.+.+.++++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 357777777777788888888888877654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=1.5e-10 Score=91.58 Aligned_cols=190 Identities=11% Similarity=0.051 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 018882 148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
..+++..+|++..+...+.+...|...+......|+.+.|..+|+.+.+.........|...+..+.+.|+.+.|..+|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45788899999887655567778888899999999999999999999886544345678999999999999999999999
Q ss_pred HHHhCCCCCcHHHHHHHHHH-HHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CC
Q 018882 228 LMRSERIKPSCVTLCSLVRA-YGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG-CK 305 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~ 305 (349)
.+.+.. +.+...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|++..... ..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 998765 3344444444432 345689999999999998764 3467899999999999999999999999988764 34
Q ss_pred CC--HHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 306 PD--KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 306 p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
|+ ...|...+.--...|+.+.+..+.+++.+.-+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 43 35788888877888999999999988776543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=5.5e-10 Score=89.98 Aligned_cols=275 Identities=11% Similarity=0.013 Sum_probs=198.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHhccCcHHHHHHHHHHHhccC----C-Ccchhh
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSED----C-EPDVWT 135 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~ 135 (349)
........+...|++++|..++++..+.....+ ...+..+..++...|++++|...+++..+.. . ......
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 344456677899999999999999887632111 2456778889999999999999999887531 1 112345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhc----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchh
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSA----GIQP---SINTFNILLDSYGKAGHFEKMSAVMEYMQKYH----YSWTIV 204 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 204 (349)
+..+...+...|++..+...+...... +... ....+..+...+...|+++.+...+....... ......
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 566777888999999999988876542 1111 12345667788889999999999998876542 222345
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC--cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC---chHHH
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSE----RIKP--SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM---LDTVF 275 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~ 275 (349)
.+......+...++...+...+...... +..+ ....+......+...|+++.|...+......... .....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 5666677788889999988888766432 1111 1234566677788999999999999887654322 23456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 276 FNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+..+..++...|++++|...++..... +..|+ ...+..+..+|...|++++|.+.++...++.+
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 667889999999999999999987643 44443 45677888899999999999999998777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=3.6e-11 Score=96.46 Aligned_cols=276 Identities=8% Similarity=-0.050 Sum_probs=193.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH----------hcCChhHHHHHHHHHHhcCCCCchH
Q 018882 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCL----------KAFAFDKVQALLSDMSTQGIRPNTV 99 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~ 99 (349)
...++......+..++|+++++++.... |-+...|+..-..+. ..+.+++|+.+++...+.. +.+..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~ 108 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG 108 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence 4444444444455689999999998763 334445544333322 2344778999999988764 33667
Q ss_pred HHHHHHHHHhccC--cHHHHHHHHHHHhccCCCcchhhHH-HHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 100 TYNTLIDAYGRAK--MFAEMELTLVKMLSEDCEPDVWTMN-CTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD 176 (349)
Q Consensus 100 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 176 (349)
.|..+..++...+ ++++|...+.++.+.. +++...+. .....+...+.++.|+..++.+.+.. +-+...|..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~ 186 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSC 186 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 7777766666655 5899999999998765 33444443 44567778899999999999988875 347888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018882 177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (349)
.+.+.|++++|...+....+.. |+ . ..+...+...+..+.+...+....... +++...+..+...+...++.++
T Consensus 187 ~~~~~~~~~~A~~~~~~~~~~~--~~--~-~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~ 260 (334)
T d1dcea1 187 LLPQLHPQPDSGPQGRLPENVL--LK--E-LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELE 260 (334)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHH--HH--H-HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHhHHhH--HH--H-HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHH
Confidence 9999999888766665444321 11 1 122333455677777888887776654 4455566667777888899999
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 018882 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-KVTYRTMVRAYS 319 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 319 (349)
|...+.......+ .+...+..+...|...|++++|.+.++...+. .|+ ...|..+...+.
T Consensus 261 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 261 SCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence 9999998887653 36778888999999999999999999999887 454 345555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=8e-11 Score=90.70 Aligned_cols=152 Identities=12% Similarity=-0.029 Sum_probs=96.2
Q ss_pred CChHHHHHHHHHHHHcCC-CC--ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 6 KQPEKAHELFQAMVDEGC-DA--NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
++.+.|+.-++++..... .+ ...+|..+..+|.+.|++++|++.|++..... |-+..+|..+..++.+.|++++|
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHh
Confidence 345566666666665421 11 23466667777888888888888888877653 45667777888888888888888
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
...|++..+.. +-+..++..+..++...|++++|...+++..+.. +.+......+...+.+.+..+....+......
T Consensus 91 ~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 91 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 88888877763 2245667777777777888888888887777654 22333333333334444444444444444433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=3.5e-11 Score=96.54 Aligned_cols=266 Identities=8% Similarity=-0.049 Sum_probs=191.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHc-------CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc
Q 018882 7 QPEKAHELFQAMVDEGCDANTQSFTALLSA---YGR-------SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKA 76 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 76 (349)
..++|+++++.+.+.. |-+...|+..-.. +.. .|++++|+.+++...+.. +.+...|..+..++...
T Consensus 44 ~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHh
Confidence 4589999999999874 2334556543333 222 344788999999988763 56777888887777776
Q ss_pred C--ChhHHHHHHHHHHhcCCCCchHHHH-HHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHH
Q 018882 77 F--AFDKVQALLSDMSTQGIRPNTVTYN-TLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 77 ~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
+ +++++...+.++.... +++...+. .....+...+.+++|+..++.+.... +-+...|+.+..++...|++++|.
T Consensus 121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 5 4789999999998874 33555554 44577778899999999999998876 456778888999999999988776
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
..+....+. .|+ .......+...+..+++...+........ ++...+..+...+...+++++|...+.+.....
T Consensus 199 ~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 272 (334)
T d1dcea1 199 PQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPEN 272 (334)
T ss_dssp SCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 555443332 111 12233445566777788888887776653 356666677777888899999999999887654
Q ss_pred CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
+.+..++..+..++...|+.++|...++.+.+..+ .+...|+.+...+.-
T Consensus 273 -p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP-~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 273 -KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP-MRAAYLDDLRSKFLL 322 (334)
T ss_dssp -HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHhH
Confidence 34567788899999999999999999999988653 245566766655553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=4.4e-10 Score=86.42 Aligned_cols=194 Identities=8% Similarity=-0.068 Sum_probs=91.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (349)
+|..+..+|.+.|++++|...|++..+.. +-+..+|..+..++...|++++|...|+++.+.. +-+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 44444555555555555555555555443 3344555555555666666666666666655543 223445555555566
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
..|++++|...++...+..+. +......+...+.+.+..+.+..+........ ++...+. ++..+. +..... .
T Consensus 117 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~--~~~~~~-~ 189 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYL--GNISEQ-T 189 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHT--TSSCHH-H
T ss_pred HHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHH--HHHHHH-H
Confidence 666666666666655554322 23222222333333343333333333333321 1111111 111111 111111 1
Q ss_pred HHHHHhhCC-----CCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 260 VLRFIDNSD-----IML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 260 ~~~~~~~~~-----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+....... ..| ...+|..+...|...|++++|.+.|+.....
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 190 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 111111000 001 2335666777788888888888888887765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.99 E-value=1.2e-08 Score=79.62 Aligned_cols=197 Identities=12% Similarity=0.011 Sum_probs=110.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcc----CCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC---C--CCHHHHHH
Q 018882 104 LIDAYGRAKMFAEMELTLVKMLSE----DCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI---Q--PSINTFNI 173 (349)
Q Consensus 104 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~ 173 (349)
....|...+++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|.+.+++..+... . ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 355677777888888887776542 1111 235677777777788888888887776554311 1 11334445
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHhc----CCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-----H-HHH
Q 018882 174 LLDSYGK-AGHFEKMSAVMEYMQKY----HYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-----C-VTL 241 (349)
Q Consensus 174 l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-~~~ 241 (349)
+...|.. .|++++|...+.+..+. +.++ ...++..+...+...|++++|...++++........ . ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 5555533 57788888777766432 1111 134566677777777888888887777665421111 0 123
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCC-ch---HHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 018882 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIM-LD---TVFFNCLVDAYGR--LKCFAEMKGVLEVMQ 300 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~li~~~~~--~g~~~~a~~~~~~m~ 300 (349)
...+..+...|+++.|...++...+..+. ++ ......++.++-. .+.+++|+..|+.+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 34444556677777777777777654321 11 1233445555444 234556665554433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=2.3e-07 Score=67.15 Aligned_cols=139 Identities=7% Similarity=0.003 Sum_probs=68.4
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH
Q 018882 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
.+...|+++.|++.|.++ .+|+..+|..+..+|...|++++|...|++..+.++. +...|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHH
Confidence 344555555555555432 1334445555555555555555555555555554432 44555555555555555555
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
|...|+...... +.+... .+...| ....+ ...++..+..++.+.|++++|.+.++...
T Consensus 89 A~~~~~kAl~~~-~~n~~~------~~~~~~--------------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 89 AIKDLKEALIQL-RGNQLI------DYKILG--------------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp HHHHHHHHHHTT-TTCSEE------ECGGGT--------------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-ccCchH------HHHHhh--------------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555544321 111000 000000 00001 12445556667777888888888777777
Q ss_pred hcCCCC
Q 018882 301 QRGCKP 306 (349)
Q Consensus 301 ~~~~~p 306 (349)
.....|
T Consensus 148 ~~~~~~ 153 (192)
T d1hh8a_ 148 SMKSEP 153 (192)
T ss_dssp TTCCSG
T ss_pred hcCCCc
Confidence 654444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.88 E-value=1.8e-07 Score=72.70 Aligned_cols=166 Identities=10% Similarity=-0.072 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-chHHHHHHHHHHhccCcHHHHHHHHHHHhcc----C-CCcchhh
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMSTQ----GIRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----D-CEPDVWT 135 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 135 (349)
|......|...+++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|.+.+++.... + ......+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 444555555555555555555554432 1111 1234555555555555555555555544432 1 0011223
Q ss_pred HHHHHHHHH-ccCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch------
Q 018882 136 MNCTLRAFG-NSGQIDTMEKCYEKFQSA----GIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTI------ 203 (349)
Q Consensus 136 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 203 (349)
+..+...|. ..|++++|.+.+.+..+. +.++ ...++..+...+...|++++|...|+++.........
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 333333342 235555555555554321 1111 1223444555555555555555555555443211110
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
..+...+..+...|+++.|...++...+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1122223334445555555555555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=4.4e-07 Score=65.63 Aligned_cols=123 Identities=7% Similarity=-0.032 Sum_probs=71.3
Q ss_pred HHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018882 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
.+...|+++.|++.|.++. +|+..+|..+..++...|++++|++.|++.++.. +.+...|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 3455566666666665432 3445556666666666666666666666666654 3355566666666666666666
Q ss_pred HHHHHHHHHhcCCC--------------C-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018882 187 MSAVMEYMQKYHYS--------------W-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234 (349)
Q Consensus 187 a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (349)
|...|++....... + ...++..+..++.+.|++++|.+.+........
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 66666665432110 0 123344555566667777777776666655433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=3.8e-07 Score=60.03 Aligned_cols=9 Identities=0% Similarity=0.084 Sum_probs=3.2
Q ss_pred CHHHHHHHH
Q 018882 183 HFEKMSAVM 191 (349)
Q Consensus 183 ~~~~a~~~~ 191 (349)
++++|+..|
T Consensus 18 ~~~eAi~~~ 26 (117)
T d1elwa_ 18 NIDDALQCY 26 (117)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 333333333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.74 E-value=1.7e-05 Score=60.31 Aligned_cols=224 Identities=8% Similarity=-0.052 Sum_probs=114.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCchHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AFAFDKVQALLSDMSTQGIRPNTVTY 101 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (349)
|+..+..|...+.+.+++++|++.|++..+.+ +..++..|...+.. ..+...+...+......+ +....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~ 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence 34566667777777788888888888876652 45555556666655 456777777777776664 22333
Q ss_pred HHHHHHHh----ccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHH----ccCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018882 102 NTLIDAYG----RAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG----NSGQIDTMEKCYEKFQSAGIQPSINTFNI 173 (349)
Q Consensus 102 ~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (349)
..+...+. ...+.+.|...++.....|.. .. ...+...+. .......+...+......+ +...+..
T Consensus 74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~-~a--~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 147 (265)
T d1ouva_ 74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA-EG--CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 147 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-HH--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHhhhhhhhhh-hH--HHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhh
Confidence 33333332 234566777777766655422 11 111111211 2333445555555544432 4445555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 174 LLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 174 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
+...+.. ..+...+...++...+.+ +......+...+.. ..+++.|...|....+.| ++..+..|.
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG 221 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 221 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence 5555543 234445555555554443 33444444433333 335555555555555544 223333444
Q ss_pred HHHHh----cCChhhHHHHHHHHhhCC
Q 018882 246 RAYGH----AGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 246 ~~~~~----~~~~~~a~~~~~~~~~~~ 268 (349)
..|.. ..+.++|.+.|+...+.|
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 44432 224555555555555444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=6.6e-07 Score=62.57 Aligned_cols=91 Identities=9% Similarity=-0.112 Sum_probs=57.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCH
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF 289 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 289 (349)
...+.+.|++++|...|++..+.. +-+...|..+..++...|++++|...|+.+.+... -+..+|..++.+|...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHcCCH
Confidence 344556666666666666666554 34556666666666666666666666666665543 2455666666666666777
Q ss_pred HHHHHHHHHHHhc
Q 018882 290 AEMKGVLEVMQQR 302 (349)
Q Consensus 290 ~~a~~~~~~m~~~ 302 (349)
++|...+++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 7776666666665
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=6.1e-07 Score=62.77 Aligned_cols=93 Identities=12% Similarity=-0.095 Sum_probs=64.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 018882 174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK 253 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (349)
....|.+.|++++|...|++..+..+. +...|..+..++...|++++|...|+.+.+.. +-+..+|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 345566777777777777777766543 66677777777777777777777777776654 4455667777777777777
Q ss_pred hhhHHHHHHHHhhCC
Q 018882 254 PEKLGSVLRFIDNSD 268 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~ 268 (349)
+++|...++......
T Consensus 94 ~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 94 FRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 777777777776654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=8.8e-07 Score=58.24 Aligned_cols=92 Identities=12% Similarity=0.053 Sum_probs=68.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
-...+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..+....+.++. +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 3455667788888888888877764 446777777778888888888888888877776543 67777777778888888
Q ss_pred hHHHHHHHHHHHhC
Q 018882 219 LKQMEYLFRLMRSE 232 (349)
Q Consensus 219 ~~~a~~~~~~~~~~ 232 (349)
+++|+..++...+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=2.1e-07 Score=68.01 Aligned_cols=100 Identities=9% Similarity=-0.088 Sum_probs=87.5
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018882 201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLV 280 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (349)
|+...+......+.+.|++++|+..|....+.. +.+...|..+..+|.+.|++++|...++.+.+..+ -+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHH
Confidence 677778888899999999999999999988765 56788899999999999999999999999988654 2677888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 018882 281 DAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+|.+.|++++|...|+.....
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=3.7e-07 Score=66.63 Aligned_cols=100 Identities=10% Similarity=-0.103 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
|+...+......+.+.|++++|+..|.+.....+. +...|..+..+|.+.|++++|...++...+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 67778888899999999999999999999887644 78999999999999999999999999998754 34577899999
Q ss_pred HHHHhcCChhhHHHHHHHHhhC
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
.++...|++++|...|+.+.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999987653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.63 E-value=3.9e-05 Score=59.86 Aligned_cols=275 Identities=11% Similarity=0.072 Sum_probs=143.0
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHH
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL 104 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (349)
||..-...+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 4555556667777788888888888876542 4456677777888887777665331 55677777
Q ss_pred HHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (349)
...+.+......+ .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+ .
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-h
Confidence 7777766655433 2222233344445566777788888888888888776543 2446667777777777654 2
Q ss_pred HHHHHHHHHHHhcCCCC--------chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018882 185 EKMSAVMEYMQKYHYSW--------TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 185 ~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (349)
++..+.+..... ...+ ....|..++..|.+.|+++.|..+.-. . +++..-....+..+.+..+++.
T Consensus 149 ~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~ 222 (336)
T d1b89a_ 149 QKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVEL 222 (336)
T ss_dssp HHHHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCChHH
Confidence 333333222111 0111 112234444444455555544433211 1 2222223334444555555555
Q ss_pred HHHHHHHHhhCCCCchHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchh
Q 018882 257 LGSVLRFIDNSDIMLDTV-----------FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKN 325 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 325 (349)
..++.....+.. |+.. --..++..+-+.++.......++.....| +....+++...|...++++
T Consensus 223 ~~~~i~~yL~~~--p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~ 297 (336)
T d1b89a_ 223 YYRAIQFYLEFK--PLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQ 297 (336)
T ss_dssp HHHHHHHHHHHC--GGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcC--HHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhH
Confidence 444444433321 2110 01234555566666666667776665544 4568888889999998876
Q ss_pred hhHHHHHH
Q 018882 326 HAKEFQDL 333 (349)
Q Consensus 326 ~a~~~~~~ 333 (349)
.-+...+.
T Consensus 298 ~l~~~i~~ 305 (336)
T d1b89a_ 298 ALRTSIDA 305 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.59 E-value=5.3e-05 Score=57.48 Aligned_cols=225 Identities=10% Similarity=-0.039 Sum_probs=137.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhc----cCcHHHHHHHHHHHhccCCCcchhhHH
Q 018882 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMN 137 (349)
Q Consensus 62 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 137 (349)
|+..+..|...+.+.+++++|.++|++..+.| +...+..|...|.. ..+...|...+......+ .|. ...
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-~~~--a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSN--GCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHH--HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-ccc--hhh
Confidence 34566667777788889999999999988876 55566666666654 557888888888877665 222 222
Q ss_pred HHHHHHH----ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 018882 138 CTLRAFG----NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIV 209 (349)
Q Consensus 138 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 209 (349)
.+...+. ...+.+.|...++...+.|.. .....+...+.. ......+...+......+ +...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 3333322 345677788888887776532 222233333332 334566666666555543 55666666
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018882 210 IDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 210 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
...+.. ..+...+...++...+.| +......+...+.. ..+++.|...|....+.| ++..+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 666664 345566666666666544 34444455544443 456777788887777665 3345555666
Q ss_pred HHHh----cCCHHHHHHHHHHHHhcCC
Q 018882 282 AYGR----LKCFAEMKGVLEVMQQRGC 304 (349)
Q Consensus 282 ~~~~----~g~~~~a~~~~~~m~~~~~ 304 (349)
.|.+ ..+.++|.+.|+...+.|.
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 6654 3367777777777777663
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=6.1e-07 Score=59.30 Aligned_cols=95 Identities=15% Similarity=0.041 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh---hhHHHHHHHHhhCCCCch-HHHHHHHHHH
Q 018882 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP---EKLGSVLRFIDNSDIMLD-TVFFNCLVDA 282 (349)
Q Consensus 207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~-~~~~~~li~~ 282 (349)
..++..+...+++++|.+.|+.....+ +.+..++..+..++.+.++. ++|+.+++.+...+..|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345556666677777777777766654 45566666666666654443 356777777665543333 2356667777
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 018882 283 YGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~ 302 (349)
|.+.|++++|.+.|+++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 77777777777777777765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.53 E-value=6.1e-07 Score=58.48 Aligned_cols=92 Identities=7% Similarity=-0.146 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 018882 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG 109 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (349)
+..+...+.+.|++++|+..|++..... +-+..+|..+..++.+.+++++|...+++..+.. +.+...+..+..+|.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 3345666777888888888888877663 4467778888888888888888888888877764 335677777888888
Q ss_pred ccCcHHHHHHHHHHH
Q 018882 110 RAKMFAEMELTLVKM 124 (349)
Q Consensus 110 ~~~~~~~a~~~~~~~ 124 (349)
..|++++|.+.+++.
T Consensus 96 ~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 96 NEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888888877765
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.6e-07 Score=78.90 Aligned_cols=228 Identities=12% Similarity=0.020 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHcCCCCC-hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHH
Q 018882 10 KAHELFQAMVDEGCDAN-TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLS 87 (349)
Q Consensus 10 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~ 87 (349)
+|.+.|++..+. .|+ +.++..+..++...|++++| |+++... .|+. ..++.. ...-...+..+.+.++
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~e--~~Lw~~~y~~~ie~~r 73 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKVE--QDLWNHAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTHH--HHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhHH--HHHHHHHHHHHHHHHH
Confidence 678888888775 343 55667777777777777766 6666543 2321 111111 1111122455666677
Q ss_pred HHHhcCCCCchHHHHHHHHH--HhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018882 88 DMSTQGIRPNTVTYNTLIDA--YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
...+....++..-....+.. ....+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+.......
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 66655433343322222212 222345555555555444332 3445566777778888899988888777665432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
...++..+...+...|++++|...|.+..+..+. +...|+.+...+...|+..+|...|.+..... +|...++..|.
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~ 227 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ 227 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence 2356777888999999999999999999887644 77899999999999999999999999998766 57778888888
Q ss_pred HHHHhcCC
Q 018882 246 RAYGHAGK 253 (349)
Q Consensus 246 ~~~~~~~~ 253 (349)
..+.+..+
T Consensus 228 ~~~~~~~~ 235 (497)
T d1ya0a1 228 KALSKALE 235 (497)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhhh
Confidence 87765443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.47 E-value=1.5e-06 Score=56.52 Aligned_cols=87 Identities=5% Similarity=-0.081 Sum_probs=43.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 018882 140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL 219 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (349)
...+.+.|++++|...|++..+.. +-+..+|..+..++.+.|++++|+..|++..+..+. +...|..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCH
Confidence 334445555555555555554442 224445555555555555555555555555444322 344555555555555555
Q ss_pred HHHHHHHHH
Q 018882 220 KQMEYLFRL 228 (349)
Q Consensus 220 ~~a~~~~~~ 228 (349)
++|.+.+++
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=2.7e-06 Score=56.06 Aligned_cols=94 Identities=7% Similarity=-0.034 Sum_probs=49.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC---cHHHHHHHHHHHhccCCCcc-hhhHHHHHHHH
Q 018882 68 ILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK---MFAEMELTLVKMLSEDCEPD-VWTMNCTLRAF 143 (349)
Q Consensus 68 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 143 (349)
.++..+...+++++|++.|++....+ +.+..++..+..++.+.+ ++++|+.+++++......|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34555555556666666666655553 234555555555555433 33345556665554432222 22444555555
Q ss_pred HccCCHHHHHHHHHHHHhc
Q 018882 144 GNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~ 162 (349)
.+.|++++|.+.|+++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 6666666666666665554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.7e-05 Score=55.76 Aligned_cols=127 Identities=7% Similarity=-0.125 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 018882 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (349)
.+......+.+.|++++|+..|.+.......... ....-......+ ...+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHHH
Confidence 3445556677778888888888776654211000 000001111111 1235667788888
Q ss_pred hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018882 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS 319 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 319 (349)
+.|++++|...++..+...+ .++..|..+..+|...|++++|...|+...+.... |......+-.+..
T Consensus 74 k~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ 141 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhccc-cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 89999999999988887764 37788888889999999999999999998876422 4444444444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=2.3e-05 Score=55.02 Aligned_cols=127 Identities=7% Similarity=-0.169 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 018882 134 WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAF 213 (349)
Q Consensus 134 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (349)
..+......+.+.|++++|...|.+.++.-..... ....-......+ -..+|+.+..+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHH
Confidence 34555667889999999999999998765211100 000000011111 123466677777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018882 214 GRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
.+.|++++|+..++..+... +.+...+..+..++...|++++|...|+.+.+..+. +..+...+..+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 78888888888888777654 446777777888888888888888888887775432 444444444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=6.6e-07 Score=75.09 Aligned_cols=227 Identities=11% Similarity=-0.044 Sum_probs=122.9
Q ss_pred HHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch-HHHHHHHHHHhccCcHHHHHHHHH
Q 018882 45 KAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT-VTYNTLIDAYGRAKMFAEMELTLV 122 (349)
Q Consensus 45 ~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 122 (349)
+|.+.|++.... .|+ ...+..+..++...+++++| +++++.. .|+. ..++..- ..-...+..+.+.++
T Consensus 4 eA~q~~~qA~~l---~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~--~Lw~~~y~~~ie~~r 73 (497)
T d1ya0a1 4 QSAQYLRQAEVL---KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQ--DLWNHAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHH---HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHH--HHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHH--HHHHHHHHHHHHHHH
Confidence 567777777654 233 33444555566666666655 6666554 2221 1111111 111123455667777
Q ss_pred HHhccCCCcchhhHHHHHHHH--HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018882 123 KMLSEDCEPDVWTMNCTLRAF--GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS 200 (349)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 200 (349)
...+....++.......+..+ ...+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+.......
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 766554334333222222221 22334444544444333322 3355667778888889999999988877665432
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018882 201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLV 280 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (349)
...++..+...+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+...... |-+.++..|.
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~ 227 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQ 227 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHH
Confidence 24577788999999999999999999998765 55668999999999999999999999999988764 6777888888
Q ss_pred HHHHhcC
Q 018882 281 DAYGRLK 287 (349)
Q Consensus 281 ~~~~~~g 287 (349)
..+.+..
T Consensus 228 ~~~~~~~ 234 (497)
T d1ya0a1 228 KALSKAL 234 (497)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 8776544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=0.00049 Score=53.50 Aligned_cols=256 Identities=15% Similarity=0.155 Sum_probs=156.6
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
-+.|.++.|..++..+ .-|..++..+.+.++++.|.+.+.+. -+..+|..+...+.+......+
T Consensus 25 ~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~~~l~~~~e~~la 88 (336)
T d1b89a_ 25 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLA 88 (336)
T ss_dssp ----CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHHHHHHhCcHHHHH
Confidence 4667777777777644 23677888999999999998887654 2567888888888888766543
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
. +.......++.....++..|-..|.+++...+++...... ..+...++.++..|++.+. ++..+.+...
T Consensus 89 ~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~l~~~--- 158 (336)
T d1b89a_ 89 Q-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMREHLELF--- 158 (336)
T ss_dssp H-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHHHHHH---
T ss_pred H-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHHHHhc---
Confidence 2 2233344566666789999999999999999999887543 5566778889999988653 3333333332
Q ss_pred CCCCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 163 GIQPSI----------NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 163 ~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+...|. ..|..++-.|.+.|+++.|..++-. + .++..-....+..+.+..+.+...++.....+.
T Consensus 159 s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~ 233 (336)
T d1b89a_ 159 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 233 (336)
T ss_dssp STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc
Confidence 111121 1234455555666666655544321 1 123333344555556666666555555544432
Q ss_pred CCCCcHHHHHH-------------HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 233 RIKPSCVTLCS-------------LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 233 ~~~~~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
.| ...+. ++..+.+.++.......++.....+ +..+.+++...|...++++.-.+..
T Consensus 234 --~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 234 --KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp --CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 22 22233 3444455556665666665655544 3468889999999999876544443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.2e-05 Score=53.45 Aligned_cols=94 Identities=5% Similarity=-0.034 Sum_probs=47.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC---C--ch-HHHHHHHHH
Q 018882 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI---M--LD-TVFFNCLVD 281 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~-~~~~~~li~ 281 (349)
.+...+...|++++|+..|.+.++.+ +.+...+..+..+|...|++++|...++.+.+... . +. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555443 23445555555555555555555555555443210 0 00 134455555
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 018882 282 AYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+...+++++|...|+.....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 566666666666666655543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=1.1e-05 Score=53.68 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=63.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-Cc-----hHHHH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIR-PN-----TVTYN 102 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~ 102 (349)
.+..+...+.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|...++++++.... +. ..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34456667777788888888887777663 456777777777888888888888877776654110 00 13455
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhcc
Q 018882 103 TLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 103 ~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.+...+...+++++|++.|++....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 5555666666777777777666543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.14 E-value=5.3e-05 Score=53.11 Aligned_cols=79 Identities=10% Similarity=-0.044 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018882 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRA 317 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 317 (349)
...+..+..++.+.|++++|+..++.+.+..+ .++..|..+..+|...|++++|...|+...+.... +......+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34455566666667777777777766666543 35566666677777777777777777766665321 34444444444
Q ss_pred H
Q 018882 318 Y 318 (349)
Q Consensus 318 ~ 318 (349)
.
T Consensus 155 ~ 155 (169)
T d1ihga1 155 K 155 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.13 E-value=6.7e-05 Score=51.55 Aligned_cols=62 Identities=15% Similarity=-0.078 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
++..+..+|.+.|++++|+..++.+.+..+ .+..+|..+..++...|++++|...|+...+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455566666666666666666666665543 35566666666666666666666666666665
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.13 E-value=8.4e-05 Score=51.03 Aligned_cols=61 Identities=13% Similarity=-0.074 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018882 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
|+.+..+|.+.|++++|+..+....+.. +.+..+|..+..++...|+++.|...|+...+.
T Consensus 70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 70 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3334444444455555555554444433 333444444455555555555555555444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.11 E-value=4.7e-05 Score=53.36 Aligned_cols=113 Identities=7% Similarity=-0.049 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------C-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018882 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYH--------------Y-SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (349)
.+......+...|++++|+..|.++.+.. . +.....|..+..++.+.|++++|+..+..+.+..
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~- 107 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 107 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-
Confidence 34555666777888888888887664310 0 1134456667777778888888888888887665
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018882 235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
+.+...|..+..++...|+++.|...|+.+.+..+ .+......+..+..
T Consensus 108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 108 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQ 156 (169)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 45667778888888888888888888888777643 24555555544433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.09 E-value=0.0002 Score=49.94 Aligned_cols=62 Identities=15% Similarity=-0.018 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+|+.+..++.+.|++++|+..++.+....+ .+...|..+..++...|++++|...|+.+...
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344455555555555555555555555432 24555555555555566666666555555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.07 E-value=8.2e-05 Score=52.49 Aligned_cols=124 Identities=13% Similarity=0.090 Sum_probs=85.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 018882 174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK 253 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (349)
........|++++|...|.........+ .. ......+-+...-..+.. .....+..+..++...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l---------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGP-VL---------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSS-TT---------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccc-cc---------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 3356678889999998888887642111 00 000110111111111111 123567778899999999
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHHH
Q 018882 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ-----RGCKPDKVTYR 312 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 312 (349)
+++|...++.+....+ .+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+-.
T Consensus 83 ~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 83 ASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred chHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 9999999999988764 4888999999999999999999999999744 59999876633
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.04 E-value=0.00012 Score=51.65 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh-----cCCCCCHH
Q 018882 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS-----AGIQPSIN 169 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 169 (349)
..+..+..++...|++++|+..++++.... +-+...|..++.++...|+..+|++.|+++.+ .|+.|+..
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 344555555666666666666666665543 34555566666666666666666666655422 35555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.00 E-value=0.00014 Score=50.79 Aligned_cols=129 Identities=10% Similarity=0.025 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDA 107 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (349)
..+......+.+.|++++|+..|++....-...+.. . .........+ ...+|+.+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~--------------~-~~~~~~~~~~-------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL--------------S-EKESKASESF-------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC--------------C-HHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc--------------c-hhhhhhcchh-------HHHHHHhHHHH
Confidence 345566677778888888888887765321101100 0 0000000000 12345556666
Q ss_pred HhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 108 YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180 (349)
Q Consensus 108 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (349)
|.+.|++++|+..+++..... +.+...|..+..++...|++++|...|.++.+.. +.+..+...+-.....
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 677777777777777766654 4556666666677777777777777777776653 2344444444433333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.97 E-value=1.4e-05 Score=60.39 Aligned_cols=51 Identities=10% Similarity=0.071 Sum_probs=27.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+.|++++|+..+++..+..+. +...+..+...++..|++++|...++...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555555555555554433 455555555555555555555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.94 E-value=1.3e-05 Score=54.68 Aligned_cols=71 Identities=6% Similarity=-0.070 Sum_probs=48.4
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcC----------CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRS----------GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC 73 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 73 (349)
+.+.+++|++.|+...+.. |.++.++..+..++... +.+++|+..|++..+.. |.+..+|..+..++
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHHHH
Confidence 4466788888888888874 55677787777777643 33466777777777653 45666777776666
Q ss_pred HhcC
Q 018882 74 LKAF 77 (349)
Q Consensus 74 ~~~~ 77 (349)
...|
T Consensus 86 ~~~g 89 (145)
T d1zu2a1 86 TSFA 89 (145)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 5543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.94 E-value=2.2e-05 Score=59.26 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=60.4
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-hHHHHHHHHHHhccCcHH
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFA 115 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 115 (349)
..+.|++++|+..+++..+.. |.|...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccH
Confidence 345667777777777666653 456666677777777777777777777776665 232 233333333332222222
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
++..-.......+-+++...+......+...|+.++|...+.++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22111111001111122222333344455566666666666665544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=0.00016 Score=48.97 Aligned_cols=71 Identities=11% Similarity=0.013 Sum_probs=46.2
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF----------AFDKVQALLSDMSTQGIRPNTVTYNTLIDAY 108 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (349)
+.+.+++|+..|+...+.. |.+..++..+..++...+ .+++|+..|++..+.. +-+..+|..+..+|
T Consensus 9 r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 4455788888888887764 566777777777776443 3456777777766653 33556666666666
Q ss_pred hccC
Q 018882 109 GRAK 112 (349)
Q Consensus 109 ~~~~ 112 (349)
...|
T Consensus 86 ~~~g 89 (145)
T d1zu2a1 86 TSFA 89 (145)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 5443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.61 E-value=0.00046 Score=47.35 Aligned_cols=98 Identities=13% Similarity=0.026 Sum_probs=51.3
Q ss_pred hhHHHH--HHHHHcCCChhHHHHHHHHhhcCCCCCCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhc---
Q 018882 28 QSFTAL--LSAYGRSGLFDKAFSLLEHMKNTPDCQPD----------VNTYSILIKSCLKAFAFDKVQALLSDMSTQ--- 92 (349)
Q Consensus 28 ~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 92 (349)
.+|..+ ...+.+.|++++|++.|++........|+ ...|+.+..++...|++++|...+++..+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345544 34455667777777777776653211222 245566666666666666666666655432
Q ss_pred --CCCCc-----hHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 018882 93 --GIRPN-----TVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 93 --~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
...++ ...++.+..+|...|++++|+..|++..
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 1133444555555555555555555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.56 E-value=0.0011 Score=45.37 Aligned_cols=53 Identities=11% Similarity=-0.059 Sum_probs=24.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCc----------HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018882 212 AFGRAGDLKQMEYLFRLMRSERI-KPS----------CVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~-~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
.+...|++++|+..|++..+... .|+ ...|+.+..+|...|++++|...++..
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a 81 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 81 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence 34455666666666665543210 011 133444445555555555555544443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.0025 Score=39.20 Aligned_cols=62 Identities=8% Similarity=-0.037 Sum_probs=30.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSAG-----IQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
..+...+.+.|+++.|...|++..+.. ..+ ...++..+..++.+.|++++|...++++.+..
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 344445555555555555555543321 011 13345555555555555555555555555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.0012 Score=40.65 Aligned_cols=67 Identities=12% Similarity=-0.012 Sum_probs=43.8
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTP----DCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
+...+..+...+.+.|++++|+..|++..+.. ...++ ..++..+..++.+.|++++|...++++++.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34445566777777788888877777665421 11122 456677777777777777777777777765
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.09 E-value=0.013 Score=37.23 Aligned_cols=68 Identities=12% Similarity=0.014 Sum_probs=51.1
Q ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018882 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
+...++..++.+...|+-+.-.++++.+.+.+ ++++...-.+..+|.+.|...++-+++.+.-+.|++
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 44566777778888888888888888876654 667777777888888888888888888888887754
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.03 E-value=0.017 Score=37.81 Aligned_cols=110 Identities=14% Similarity=-0.039 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHH
Q 018882 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AFAFDKV 82 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a 82 (349)
|+++|+..|++..+.| ++..+..|.. ....+.++|++++++..+.+ +......|...+.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g----~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc----chhhhhhHHHhhhhccccchhhHHH
Confidence 5566677776666654 2333333322 23345556666666555432 33333334333332 2345555
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhc----cCcHHHHHHHHHHHhccC
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSED 128 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 128 (349)
.++|++..+.| ++.....|...|.. ..+.++|.++|++..+.|
T Consensus 79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 55555555544 22333333333332 234445555554444433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.43 E-value=0.054 Score=35.30 Aligned_cols=12 Identities=8% Similarity=0.016 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHh
Q 018882 80 DKVQALLSDMST 91 (349)
Q Consensus 80 ~~a~~~~~~~~~ 91 (349)
++|..+|++..+
T Consensus 10 ~~A~~~~~kaa~ 21 (133)
T d1klxa_ 10 KKAIQYYVKACE 21 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.14 E-value=0.071 Score=33.76 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=87.6
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHH
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (349)
+...|..++..+++.+..... +..-||.+|.-....-+-+....+++.+-+.- |. ...++....
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~F---Dl----------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF---DL----------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS---CG----------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhc---Cc----------hhhhcHHHH
Confidence 445677888888888877653 55556667766666666666666666654321 11 123333333
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
...+-.+ ..+...+...+..+..+|+-+...++++.+.+.+ ++++...-.+..+|.+.|...++-+++.+..+.
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 3333322 1223445555666777777777777777766643 466777777778888888888888888887777
Q ss_pred CCC
Q 018882 303 GCK 305 (349)
Q Consensus 303 ~~~ 305 (349)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.66 E-value=0.27 Score=31.12 Aligned_cols=68 Identities=7% Similarity=-0.047 Sum_probs=45.6
Q ss_pred CCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 235 KPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.|+..+-.....++.++.+ .++++.+++.+.+.+..-....+-.|..+|.+.|++++|.+.++.+.+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3555566666666766644 4567777777766442212345666777788888888888888888876
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.60 E-value=0.19 Score=31.88 Aligned_cols=71 Identities=7% Similarity=-0.119 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhhh
Q 018882 271 LDTVFFNCLVDAYGRLK---CFAEMKGVLEVMQQRGCKPDK-VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCL 342 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 342 (349)
++..+-.....++.+.. +.++++.+|++..+.+ +.+. ..+..+.-+|.+.|+++.|.++++.+.++++...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 45556566677777654 4578999999998763 2233 5667788899999999999999999999887543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.96 Score=36.20 Aligned_cols=307 Identities=9% Similarity=-0.017 Sum_probs=135.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYG--RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+.|+...+.++...+.+. | ...|-..-..-. .....++...+++. .++-+.....-...+..+.+.++++.
T Consensus 18 ~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~---~p~~P~~~~lr~~~l~~L~~~~~w~~ 90 (450)
T d1qsaa1 18 DNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRA---NPTLPPARTLQSRFVNELARREDWRG 90 (450)
T ss_dssp HTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHH---CCCChhHHHHHHHHHHHHHhccCHHH
Confidence 345666666665555321 2 233332222221 23344444444433 21111122223344666777777766
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHH--HHHHHHHH
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDT--MEKCYEKF 159 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~ 159 (349)
....+ . ..+.+...-.....+....|+..+|...+..+-..| ......+..+...+...|.... ..+-+..+
T Consensus 91 ~~~~~----~-~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~ 164 (450)
T d1qsaa1 91 LLAFS----P-EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLA 164 (450)
T ss_dssp HHHHC----C-SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHhc----c-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 54433 1 224455555567777888888888888777766554 2333344555555444443321 11222222
Q ss_pred HhcC-----------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh--cCChHHHHHH
Q 018882 160 QSAG-----------IQPSI-NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR--AGDLKQMEYL 225 (349)
Q Consensus 160 ~~~~-----------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~ 225 (349)
...| ++++. ......+.... +...+... .... .++......+..++.+ ..+.+.+..+
T Consensus 165 l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~---~~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~ 236 (450)
T d1qsaa1 165 MKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTF---ARTT--GATDFTRQMAAVAFASVARQDAENARLM 236 (450)
T ss_dssp HHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHH---HHHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHH---HhcC--CCChhhhHHHHHHHHHHhccChhHHHHH
Confidence 2221 11111 11111111111 11111111 1111 1122222222222222 2456666666
Q ss_pred HHHHHhCCCCCcHHHHHHH----HHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 226 FRLMRSERIKPSCVTLCSL----VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
+........ .+..-+..+ .......+..+.+...+......+. +.......+......+++..+...+..|..
T Consensus 237 l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~ 313 (450)
T d1qsaa1 237 IPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPM 313 (450)
T ss_dssp HHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCT
T ss_pred HHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCc
Confidence 666544321 122222211 1222234455566666655554432 333333344445566777777777766643
Q ss_pred cCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 302 RGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 302 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
.. .-...-.--+.+++...|+.+.|..++..+.
T Consensus 314 ~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 314 EA-KEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp TG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 21 1123333445566777777777777766654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.61 E-value=0.37 Score=28.76 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=27.6
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
++.+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-.+.+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555555666666666666666666666666666655543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.16 E-value=1.1 Score=26.71 Aligned_cols=46 Identities=11% Similarity=0.250 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
++.+-++.+......|++.+..+.+++|.+.+++..|.++|+.++.
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555555555555543
|