Citrus Sinensis ID: 018885

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD
Secondary Structure (PSIPRED)
cEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccHHHHHEEEEEHEHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFgafktsdlfpfrlgnmmSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFlpfeessyatfarsasgqypqkskKIGNSLAEALKLVLLIGLVFmafgpsysYSLVRLLYgkkwsdgeastaLRYYCLYVVVLAMNGTSEAFLHAVATEDQlkrsndslLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKhyfqgsssfsfrsslpsgwpiLLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD
Flexible Loop (DISEMBL)
MCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFarsasgqypqkSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKiirfrnhkd
Low Complexity Region (SEG)
MCILIVKQYEMEKGIVFALSQVAYAASlflgywgyfllfgafKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGsssfsfrssLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD
Disordered region (IsUnstruct)
*CILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA**************GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFR****
Disordered Region (DISOPRED)
MCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR***************SLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKI*RFR****
Disordered Region (DISEMBL)
MCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATF*************KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD
Disordered Region (DISPRO)
MCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRN***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	349	2.2.26 [Sep-21-2011]
Q54IV7	540	Protein RFT1 homolog OS=D	yes	no	0.839	0.542	0.325	6e-39
Q0D2E8	539	Protein RFT1 homolog OS=X	yes	no	0.911	0.589	0.357	1e-36
Q96AA3	541	Protein RFT1 homolog OS=H	yes	no	0.879	0.567	0.336	1e-30
Q8C3B8	541	Protein RFT1 homolog OS=M	yes	no	0.919	0.593	0.327	2e-29
P38206	574	Oligosaccharide transloca	yes	no	0.785	0.477	0.314	2e-29
Q6FPE8	551	Oligosaccharide transloca	yes	no	0.727	0.460	0.344	2e-28
Q9Y123	556	Protein RFT1 homolog OS=D	yes	no	0.719	0.451	0.315	9e-28
O94302	527	Oligosaccharide transloca	yes	no	0.779	0.516	0.307	5e-26
Q754Q7	552	Oligosaccharide transloca	yes	no	0.616	0.389	0.345	1e-25
Q23444	522	Protein RFT1 homolog OS=C	yes	no	0.859	0.574	0.297	7e-24

>sp|Q54IV7|RFT1_DICDI Protein RFT1 homolog OS=Dictyostelium discoideum GN=rft1 PE=3 SV=1

 Score =  161 bits (408), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 180/360 (50%), Gaps = 67/360 (18%)

Query: 17  FALSQVAYAASLFLGYWGYFLLF--------------GAFKTSD-LFPFRLGNMMSYDKQ 61
           F  +Q+ Y+ +L +GY+GYFL+                 FK+ D LFP +    +  D+ 
Sbjct: 190 FGYAQILYSLTLVIGYFGYFLINIINNNKNKDNKEFSNCFKSIDQLFP-KFSTRI--DRN 246

Query: 62  LANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESS 121
           L  +  L+T+QS  KLLLQEGEK VL + +T   QA++ +V  LGSL+VR +FLP EE+ 
Sbjct: 247 LIKLSLLYTWQSIYKLLLQEGEKFVLFFSETNQGQAIFAIVSNLGSLIVRFLFLPIEETC 306

Query: 122 YATFAR-------------------------SASGQYPQKSKKIGNSLAEALKLVLLIGL 156
           +  F +                           +       K   N L   +K ++L+ L
Sbjct: 307 FLMFPKLFPTINNNNNNNNNNNNNNNNNNKNQENNNNNDDFKNGANVLIVIMKFLILVSL 366

Query: 157 VFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQL 216
           VF  FGP +S+ L+ LLY  K+ D  A   L +YC+YV  LA+NG SE+F+H+VA EDQL
Sbjct: 367 VFTCFGPGFSHLLLNLLYNNKFRDTNAGVLLGFYCIYVGFLAINGVSESFVHSVAKEDQL 426

Query: 217 KRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFS 276
           K  N  L++   IY++  +I  +   ++G+ILAN LN+ L                    
Sbjct: 427 KTVNWVLIIIGFIYLLFTLIFCKLFQNIGIILANCLNIKL-------------------- 466

Query: 277 FRSSLPSGWPIL--LVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRE 334
             + +P+   +L  ++S +IT  S +   +   F +T  IH  +G+ CF  +   IY +E
Sbjct: 467 -SNMIPNKMVLLSFIISFIITNLSNKYIYNAVSFKST-CIHLLIGIICFIQTCTFIYLKE 524

May be involved in N-linked oligosaccharide assembly.
Dictyostelium discoideum (taxid: 44689)

>sp|Q0D2E8|RFT1_XENTR Protein RFT1 homolog OS=Xenopus tropicalis GN=rft1 PE=2 SV=1

 Score =  154 bits (388), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/347 (35%), Positives = 182/347 (52%), Gaps = 29/347 (8%)

Query: 3   ILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSY---- 58
           +L+  Q+ +   ++F+L+QV Y ++L L Y  YF  F     ++  PF L  M  +    
Sbjct: 171 VLLCPQWGL---LIFSLAQVLYTSALALCYIAYFARFLGSLEAEKKPFPLRRMREFLPRF 227

Query: 59  -------DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLV 109
                  D + A +   F  QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV
Sbjct: 228 SSSQAFLDWKQAWLAWSFFKQSFLKQILTEGERYVMTFLNVLSFGDQGVYDIVNNLGSLV 287

Query: 110 VRMVFLPFEESSYATFARS-ASGQYPQKSKKIGNSLAEA-----LKLVLLIGLVFMAFGP 163
            R +FLP EES Y  FA+    G+  Q  +K   S+A       LKLV LIGLV +AFG 
Sbjct: 288 ARFIFLPIEESFYVFFAKVLERGKKVQSQRKEEISMASEVLESLLKLVTLIGLVIIAFGY 347

Query: 164 SYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSL 223
           +YS+  + +  G   S G     LR YCLYV++LA+NG +E F  A   ++ + R N  +
Sbjct: 348 AYSHLALDIYGGSMLSGGSGPVLLRCYCLYVLLLAINGVTECFTFASMGKEDVDRYNYVM 407

Query: 224 LVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPS 283
           L  S+ ++ ++  +    GSVG ILAN  NM LRI +S ++I  Y++GS        LPS
Sbjct: 408 LGLSLSFLCLSYYMTLWLGSVGFILANCFNMGLRITHSLLYIMRYYKGSPYQPLIGLLPS 467

Query: 284 GWP----ILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCIS 326
             P    +L VS  +T +SE + L     W   L H  VG  C  ++
Sbjct: 468 --PVVVCVLAVSAAVTGYSE-VALCCDKGWLLCLGHIVVGGLCLLVT 511

May be involved in N-linked oligosaccharide assembly. May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Xenopus tropicalis (taxid: 8364)

>sp|Q96AA3|RFT1_HUMAN Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 170/336 (50%), Gaps = 29/336 (8%)

Query: 16  VFALSQVAYAASLFLGYWGYFL-LFGAFKTS-----------DLFPFRLGNMMSYDKQLA 63
           +F+L+Q+ Y   L L Y  YF  L G+ +++           DL P    N    + + A
Sbjct: 181 IFSLAQLFYTTVLVLCYVIYFTKLLGSPESTKLQTLPVSRITDLLPNITRNGAFINWKEA 240

Query: 64  NMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESS 121
            +   F  QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES 
Sbjct: 241 KLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPIEESF 300

Query: 122 YATFARS-ASGQYPQKSKKIGNSLAEALKLVLLIGL-----VFMAFGPSYSYSLVRLLYG 175
           Y  FA+    G+     K+   ++A A+   LL            FG +YS   + +  G
Sbjct: 301 YIFFAKVLERGKDATLQKQEDVAVAAAVLESLLKLALLAGLTITVFGFAYSQLALDIYGG 360

Query: 176 KKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNV 235
              S G     LR YCLYV++LA+NG +E F  A  +++++ R N  +L  S  ++V++ 
Sbjct: 361 TMLSSGSGPVLLRSYCLYVLLLAINGVTECFTFAAMSKEEVDRYNFVMLALSSSFLVLSY 420

Query: 236 ILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILL----VS 291
           +L +  GSVG ILAN  NM +RI  S  FI  Y++ S          S  P+LL    +S
Sbjct: 421 LLTRWCGSVGFILANCFNMGIRITQSLCFIHRYYRRSPHRPLAGLHLS--PVLLGTFALS 478

Query: 292 GVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISS 327
           G +T  SE +FL  +  W   L H +VG   FC+ +
Sbjct: 479 GGVTAVSE-VFLCCEQGWPARLAHIAVG--AFCLGA 511

May be involved in N-linked oligosaccharide assembly. May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Homo sapiens (taxid: 9606)

>sp|Q8C3B8|RFT1_MOUSE Protein RFT1 homolog OS=Mus musculus GN=Rft1 PE=2 SV=2

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 170/348 (48%), Gaps = 27/348 (7%)

Query: 16  VFALSQVAYAASLFLGYWGYF------------LLFGAFKTSDLFPFRLGNMMSYDKQLA 63
           +F+L+Q+ Y   L L Y  Y             L     + + L P    +    + + A
Sbjct: 181 IFSLAQLLYTTVLVLCYAIYLIQLLRSPESAKQLTLPVSRVTQLLPSISRSRAFVNWKEA 240

Query: 64  NMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESS 121
            +   F  QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES 
Sbjct: 241 GLAWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPVEESF 300

Query: 122 YATFARSASGQYP---QKSKKIGNSLA---EALKLVLLIGLVFMAFGPSYSYSLVRLLYG 175
           Y  FA+    +     QK   +  + A     LKL LL GL    FG +YS   + +  G
Sbjct: 301 YLFFAKVLEREKDASLQKQDDVAVAAAVLESLLKLALLTGLTMTVFGFAYSQLALDIYGG 360

Query: 176 KKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNV 235
              S G     +R YCLYV++LA+NG +E F+ A  +++++ R N ++L  S  ++V++ 
Sbjct: 361 AMLSSGSGPVLMRCYCLYVLLLAINGVTECFMFAAMSKEEVDRYNFTMLALSSSFLVLSY 420

Query: 236 ILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILL----VS 291
           +L    GSVG I+AN  NM +RI  S  FI HYF+ S          S  P+LL    +S
Sbjct: 421 LLTSWCGSVGFIMANCFNMGIRITQSLSFIHHYFRESPHRPLAGLRLS--PVLLGVFILS 478

Query: 292 GVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIY 339
             IT  SE  FL  +  W   L H +VG  C  ++    +  E   I+
Sbjct: 479 AGITSVSEA-FLCCERGWPARLAHIAVGTICLGVTLGTAFLTETKLIH 525

May be involved in N-linked oligosaccharide assembly. May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Mus musculus (taxid: 10090)

>sp|P38206|RFT1_YEAST Oligosaccharide translocation protein RFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFT1 PE=1 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 152/305 (49%), Gaps = 31/305 (10%)

Query: 15  IVFALSQVAYAASLFLGY-WGYFLLFGAFKTSDLFPFRLGNMMS---------YDKQLAN 64
           + FAL ++A++ +L   Y W Y      FK   LF  RL  + +         Y K  + 
Sbjct: 223 LAFALGKLAHSITLLACYYWDYL---KNFKPKKLFSTRLTKIKTRENNELKKGYPKSTSY 279

Query: 65  MCTLFTFQSFRKL--------LLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLP 116
                  Q F+K+        LL EG+KL++  L T   Q +Y L+   GSL+ R++F P
Sbjct: 280 FFQNDILQHFKKVYFQLCFKHLLTEGDKLIINSLCTVEEQGIYALLSNYGSLLTRLLFAP 339

Query: 117 FEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK 176
            EES     AR  S   P+  K     L    +  + + L+ + FGP+ S  L++ L G 
Sbjct: 340 IEESLRLFLARLLSSHNPKNLKLSIEVLVNLTRFYIYLSLMIIVFGPANSSFLLQFLIGS 399

Query: 177 KWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVI 236
           KWS       +R YC Y+  L++NG  EAF  +VAT DQ+ + +  ++ FS I+++ + +
Sbjct: 400 KWSTTSVLDTIRVYCFYIPFLSLNGIFEAFFQSVATGDQILKHSYFMMAFSGIFLLNSWL 459

Query: 237 LIQ--SAGSVGLILANSLNMILRIIYSAIFIKHY----FQGSSSF----SFRSSLPSGWP 286
           LI+       GLIL+N +NM+LRI+Y  +F+  +    F  SS F     F++ + +G  
Sbjct: 460 LIEKLKLSIEGLILSNIINMVLRILYCGVFLNKFHRELFTDSSFFFNFKDFKTVIIAGST 519

Query: 287 ILLVS 291
           I L+ 
Sbjct: 520 ICLLD 524

Involved in N-linked oligosaccharide assembly. Required for the translocation of Man(5)GlcNAc(2)-PP-dolichol from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6FPE8|RFT1_CANGA Oligosaccharide translocation protein RFT1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RFT1 PE=3 SV=1

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/267 (34%), Positives = 144/267 (53%), Gaps = 13/267 (4%)

Query: 15  IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSY--DKQL----ANMCTL 68
           + FAL ++AYAA+L + Y+  +L+   FK++  F   L  + S   +KQ     +++   
Sbjct: 208 LAFALGKLAYAATLLMCYYYNYLM--NFKSNKPFKLSLQKIKSKVNEKQTYYFRSDILEH 265

Query: 69  FT---FQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATF 125
           F    FQ   K LL EG+KL++    T   Q +Y L+   GSL+ R++F P EES     
Sbjct: 266 FKKVYFQLCFKHLLTEGDKLIINTFCTVEEQGIYSLLSNYGSLITRLLFAPIEESLRLLL 325

Query: 126 ARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEAST 185
           A   S +  +  +     L    K  L + L+ M FGP+ S  L++ L G KWS      
Sbjct: 326 AVLLSKKDSKNLQLSMKVLVNLTKFYLYLSLLVMIFGPNNSSYLLQFLIGSKWSTNSVLH 385

Query: 186 ALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ--SAGS 243
           A+R YC+Y+  L+ NG  EAFL +VAT DQ+ R +  +++ S  +++ + I I+      
Sbjct: 386 AIRVYCVYIPFLSFNGIFEAFLASVATGDQILRHSYFMMMCSFAFLINSWIFIEYLDLSV 445

Query: 244 VGLILANSLNMILRIIYSAIFIKHYFQ 270
            GLI++N +NM LRIIYS  FI  +++
Sbjct: 446 NGLIISNIINMSLRIIYSFSFIVKFYR 472

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q9Y123|RFT1_DROME Protein RFT1 homolog OS=Drosophila melanogaster GN=CG3149 PE=2 SV=1

 Score =  124 bits (312), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 153/301 (50%), Gaps = 50/301 (16%)

Query: 17  FALSQVAYAASLFLGYWGYFLLF-------------------GAFKTS-----DLFPFRL 52
           FA++Q++ A ++ LG +G+F  +                    A++ S     D FPF+ 
Sbjct: 185 FAIAQLSSAVTIVLGQYGFFYFYLKGFKDFVTQQAKKKPVAPKAWQVSLYEHMDDFPFKQ 244

Query: 53  -----------GNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY----NQA 97
                       N   ++++L  +   F  Q   K +L EGEK V+    +P      QA
Sbjct: 245 LSDFLPGVMFNPNGKHFNRELQTLTLSFVKQGVLKQILTEGEKYVMS--VSPVLSFGEQA 302

Query: 98  VYGLVDKLGSLVVRMVFLPFEESSYATFARSAS-----GQYPQKSKKIGNSLAEALKL-V 151
            Y +V+ LGS+  R +F P E+SSY  F ++ S      + PQ+  +  +S+   L L V
Sbjct: 303 TYDVVNNLGSMAARFIFRPIEDSSYFYFTQTLSRDIKLAKQPQERVRQASSVLNNLLLGV 362

Query: 152 LLIGLVFMAFGPSYSYSLVRLLYGKK--WSDGEASTALRYYCLYVVVLAMNGTSEAFLHA 209
             IGL+   FG SYSY  V LLYG     + G   + L+++CL + +LA+NG SE ++ A
Sbjct: 363 SSIGLIAFTFGQSYSYP-VLLLYGGPDFVAGGLPQSLLQWHCLAIYLLAVNGISEGYMFA 421

Query: 210 VATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYF 269
             T   + + N  + +FSV ++V++ IL    G VG I AN +NM+ RI+YS  +I+H +
Sbjct: 422 TNTSRDIDKYNYLMAIFSVSFLVLSYILTGIFGPVGFIFANCINMLSRILYSTYYIRHQY 481

Query: 270 Q 270
           +
Sbjct: 482 R 482

May be involved in N-linked oligosaccharide assembly.

Drosophila melanogaster (taxid: 7227)

>sp|O94302|RFT1_SCHPO Oligosaccharide translocation protein rft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rft1 PE=3 SV=1

 Score =  119 bits (297), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 142/286 (49%), Gaps = 14/286 (4%)

Query: 2   CILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSY--- 58
            I ++ + +    + FAL  ++   ++F     + L + A +   +F  ++G    Y   
Sbjct: 183 AISVLGRNKAPSSLPFALGNLSEKVTIF-----FTLRYFAKQPFSIFLHKVGENERYIFW 237

Query: 59  DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFE 118
           D     +    T+Q   K L+ +G+K+++ W  +P  Q  Y L    GSL+ R+VF P E
Sbjct: 238 DSSTLRIICSHTYQVLLKHLITKGDKIMVAWYASPSAQGPYALASNYGSLLARIVFRPVE 297

Query: 119 ESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKW 178
           + S+  FA+    +  +  KK  N LA  LKL   + L F+ FG +YS  ++    G KW
Sbjct: 298 DHSHIVFAQLTHYKNKKDEKKALNLLAWILKLYSYMSL-FILFGSNYSDIVLLFGAGSKW 356

Query: 179 SDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILI 238
           +  ++S+ L +Y +Y+  +A NG  EAF  + A   QL       L  +V Y +    L+
Sbjct: 357 ASPDSSSILSWYAMYIPFMAANGVLEAFYVSAANSSQLYDQGKCYLASAVFYFITGKFLL 416

Query: 239 Q--SAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLP 282
              + GS GLILAN LN+ LRI ++  FI H ++    FS   SLP
Sbjct: 417 SWFNLGSHGLILANILNLSLRICFALRFILHNYKD---FSLPRSLP 459

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q754Q7|RFT1_ASHGO Oligosaccharide translocation protein RFT1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RFT1 PE=3 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 2/217 (0%)

Query: 71  FQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSAS 130
           FQ   K LL EG+KL++  L T   Q +Y L+   GSL+ RMVF P EES      R  S
Sbjct: 269 FQLCFKHLLTEGDKLIINSLCTVEEQGIYSLLSNYGSLITRMVFAPIEESLLLFLTRLLS 328

Query: 131 GQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYY 190
            +  Q        L   +K  L + LV + FGP+ S  L++ L G KWS       +R Y
Sbjct: 329 DKTQQNLHICMRVLVNLVKFYLYLALVIVIFGPTNSSFLLKFLIGSKWSSTSVLETIRVY 388

Query: 191 CLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ--SAGSVGLIL 248
           C Y+  L+MNG  EAF  +VA+ D++ R +  +++ S ++++   + +   +    GLI 
Sbjct: 389 CFYLPFLSMNGILEAFFASVASGDEILRHSYLMMLLSGVFLLNCWVFLAHFNLSLEGLIF 448

Query: 249 ANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGW 285
           +N +NM LRIIY + +I+ +++   + S ++SL S +
Sbjct: 449 SNIINMTLRIIYCSNYIRGFYKRLFADSKQTSLSSSF 485

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q23444|RFT1_CAEEL Protein RFT1 homolog OS=Caenorhabditis elegans GN=ZK180.3 PE=3 SV=1

 Score =  111 bits (278), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 155/316 (49%), Gaps = 16/316 (5%)

Query: 45  SDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLD--TPYNQAVYGLV 102
           SDLFP +    +  D   A + T+F+  S  K LL +G   V+ + +  +  +QAVY  V
Sbjct: 212 SDLFP-KFSEGIDRDSIHA-VFTMFS-HSILKQLLTDGSAYVMTFTELLSLKDQAVYDAV 268

Query: 103 DKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGN------SLAEALKLVLLIGL 156
           +++GS++VR +  P +E+  A F+ +   +    +K   N      +L++ L +V +IG 
Sbjct: 269 ERVGSIIVRTILSPIDENCNAYFSNTIRKESSVFNKNTDNHDDLVDTLSKVLHVVGVIGF 328

Query: 157 VFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQL 216
           V   FG  YS  ++ L  GK  S+   +  L  Y  Y++V A+NG +E F  A     Q+
Sbjct: 329 VACTFGIPYSPVVISLYGGKLLSENGGALLLSLYSGYILVTAINGITEGFAMASMDNRQI 388

Query: 217 KRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFS 276
                 L V S+I++++N +L     S G I+AN +NM +RIIY+   I+ Y  G    S
Sbjct: 389 FTHGKFLFVTSIIHLIINYVLCVYMNSAGFIVANIINMSVRIIYNWRTIREYL-GDKCPS 447

Query: 277 FRSSLPSGWP--ILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRE 334
           F   LP+G     L VS + T F+  +F        T L H ++G  C  +++      +
Sbjct: 448 FTEVLPTGQTSIFLGVSLLATSFTYLLFATTPGLSYT-LAHIAIGAVCLILTAQDTAQHD 506

Query: 335 RSFIYKIIRF-RNHKD 349
             F   +    + H+D
Sbjct: 507 SVFTVIVDSLAKKHRD 522

May be involved in N-linked oligosaccharide assembly.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
224138472	476	predicted protein [Populus trichocarpa]	1.0	0.733	0.793	1e-163
356531685	518	PREDICTED: protein RFT1 homolog [Glycine	1.0	0.673	0.770	1e-153
356544271	518	PREDICTED: LOW QUALITY PROTEIN: protein	1.0	0.673	0.762	1e-153
38260621	481	nuclear division RFT1-like protein [Sisy	0.997	0.723	0.735	1e-151
449458359	528	PREDICTED: protein RFT1 homolog [Cucumis	0.997	0.659	0.742	1e-150
38260690	478	nuclear division RFT1-like protein [Arab	0.991	0.723	0.724	1e-150
38260636	478	nuclear division RFT1-like protein [Arab	0.991	0.723	0.724	1e-150
297806793	478	hypothetical protein ARALYDRAFT_325378 [	0.991	0.723	0.721	1e-149
38260654	478	nuclear division RFT1-like protein [Caps	1.0	0.730	0.700	1e-147
334187490	611	lipid transporter [Arabidopsis thaliana]	0.991	0.566	0.698	1e-144

>gi|224138472|ref|XP_002326611.1| predicted protein [Populus trichocarpa] gi|222833933|gb|EEE72410.1| predicted protein [Populus trichocarpa]

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 277/349 (79%), Positives = 315/349 (90%)

Query: 1   MCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDK 60
           M ILIVKQ  M+KGIVFALSQ AY A LFLGYW YF+LF AF++S LFPFRLG +M YDK
Sbjct: 128 MYILIVKQTSMDKGIVFALSQTAYGACLFLGYWSYFVLFRAFRSSVLFPFRLGTIMDYDK 187

Query: 61  QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEES 120
           QL++MC LFT QSF+KL+LQEGEK VLVWLDTPYNQAVYGLVDKLG LVVR+VFLPFEES
Sbjct: 188 QLSSMCVLFTLQSFQKLILQEGEKFVLVWLDTPYNQAVYGLVDKLGILVVRLVFLPFEES 247

Query: 121 SYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSD 180
           SYATFARSASG+ P KS+K+G+ L+EALKLVLLIG+VFM FGPSYSYSL+R+LYG+KWSD
Sbjct: 248 SYATFARSASGKDPNKSRKLGSCLSEALKLVLLIGVVFMTFGPSYSYSLIRMLYGRKWSD 307

Query: 181 GEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQS 240
           GEASTAL+YYC YV+VLAMNGTSEAFLHAVATE QLKRSNDSLLVFS+IY+VMNV+LI+S
Sbjct: 308 GEASTALQYYCFYVIVLAMNGTSEAFLHAVATESQLKRSNDSLLVFSLIYVVMNVLLIKS 367

Query: 241 AGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSER 300
           AG+VGLILANSLNMILRIIYSA+FIK+YFQ SS+FSF S LPSGW +LL SGVITL SE+
Sbjct: 368 AGAVGLILANSLNMILRIIYSAVFIKYYFQDSSAFSFTSCLPSGWTVLLFSGVITLISEK 427

Query: 301 IFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD 349
           +FLD ++FW TFLIHFS+GLTCFCISS +IY RER FI +IIRFR+H D
Sbjct: 428 LFLDHENFWPTFLIHFSIGLTCFCISSFIIYRRERPFINRIIRFRDHMD 476

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531685|ref|XP_003534407.1| PREDICTED: protein RFT1 homolog [Glycine max]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 269/349 (77%), Positives = 301/349 (86%)

Query: 1   MCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDK 60
           M  LIVKQ  MEK I+FALSQ AY A LFLGYWGY LL   F+ S LFPFR G M+ +D+
Sbjct: 170 MYFLIVKQTGMEKSIIFALSQSAYGACLFLGYWGYLLLSQKFRVSYLFPFREGKMIDFDQ 229

Query: 61  QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEES 120
           QL+ MC LFTFQSFRKL+LQEGEK+VLVWLDTPYNQAVYGLVDKLGSLVVR+VFLPFEES
Sbjct: 230 QLSKMCILFTFQSFRKLILQEGEKIVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEES 289

Query: 121 SYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSD 180
           SY TFARSASGQYP KSKK+GNSL E+LKLVLLIGLVFMAFGPSYSYSL+RLLYG+KWSD
Sbjct: 290 SYVTFARSASGQYPGKSKKLGNSLTESLKLVLLIGLVFMAFGPSYSYSLIRLLYGEKWSD 349

Query: 181 GEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQS 240
           GEASTALR YC YV+VLAMNGTSEAF+HAVATE QLKRSNDSLL+FS+IYIV+NV+LI+ 
Sbjct: 350 GEASTALRCYCFYVIVLAMNGTSEAFMHAVATERQLKRSNDSLLIFSLIYIVLNVMLIRL 409

Query: 241 AGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSER 300
           AG+VGLILANSLNM LRI+YSA FIK+YFQGSSSFSF   LPSGW  LL+SGVITL SE 
Sbjct: 410 AGAVGLILANSLNMTLRILYSATFIKNYFQGSSSFSFCGCLPSGWITLLLSGVITLVSEN 469

Query: 301 IFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD 349
           + LDR +F  +F+ H SVGL CFC+SS VIY RE+ FI +IIRF +H D
Sbjct: 470 VLLDRDNFSLSFMFHLSVGLACFCVSSYVIYCREKPFIRRIIRFNDHVD 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544271|ref|XP_003540577.1| PREDICTED: LOW QUALITY PROTEIN: protein RFT1 homolog [Glycine max]

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/349 (76%), Positives = 302/349 (86%)

Query: 1   MCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDK 60
           M  LIVKQ  +EK I+FALSQ AY A LFLGYWGY LL   F+ S LFPFR G ++ +D+
Sbjct: 170 MYFLIVKQTGIEKSIIFALSQSAYGACLFLGYWGYLLLSQKFRVSYLFPFREGKVIDFDR 229

Query: 61  QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEES 120
           QL+ MC LFTFQSFRKL+LQEGEK+VLVWLDTPYNQAVYGLVDK GSLVVR+VFLPFEES
Sbjct: 230 QLSKMCMLFTFQSFRKLILQEGEKIVLVWLDTPYNQAVYGLVDKFGSLVVRLVFLPFEES 289

Query: 121 SYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSD 180
           SYATFARS SGQYP KSKK+GN + E+LKLVLLIGLVFMAFGPSYSYSL+RLLYG+KWSD
Sbjct: 290 SYATFARSTSGQYPGKSKKLGNGVTESLKLVLLIGLVFMAFGPSYSYSLIRLLYGEKWSD 349

Query: 181 GEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQS 240
           GEASTALR YC YV+VLAMNGTSEAF+HAVATE QLKRSNDSLLVFS+IYIV+NV+LI+S
Sbjct: 350 GEASTALRCYCFYVIVLAMNGTSEAFMHAVATESQLKRSNDSLLVFSLIYIVLNVLLIRS 409

Query: 241 AGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSER 300
           AG+VGLI+ANSLNM LRI+YSAIFIK+YFQGSSSFSF   LPSGW  LL+SGVITL SE 
Sbjct: 410 AGAVGLIMANSLNMTLRILYSAIFIKNYFQGSSSFSFYGCLPSGWIALLLSGVITLISEN 469

Query: 301 IFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD 349
           + LDR +F  +F++H SVGL CFC+SS VIY RE+ FI +IIRF +H D
Sbjct: 470 VLLDRDNFXPSFILHLSVGLVCFCVSSYVIYCREKPFIRRIIRFNDHVD 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260621|gb|AAR15439.1| nuclear division RFT1-like protein [Sisymbrium irio]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/351 (73%), Positives = 302/351 (86%), Gaps = 3/351 (0%)

Query: 1   MCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDK 60
           +C LIVKQ  MEKGI+FALSQVAY  SLFLGYW YFL+ G FK+ +LFPFR GN M +DK
Sbjct: 128 LCFLIVKQTNMEKGIIFALSQVAYGGSLFLGYWAYFLVRGIFKSLNLFPFRRGNFMDFDK 187

Query: 61  QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEES 120
            L++MC LFTFQSFRKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVFLPFEES
Sbjct: 188 PLSSMCMLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFLPFEES 247

Query: 121 SYATFARSASGQ-YPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWS 179
           SY TFAR ASG  Y QK K++G  L EALKLV+LIGLVFMAFGP YSYSL+RLLYG+KWS
Sbjct: 248 SYTTFARFASGDDYQQKRKRLGICLTEALKLVMLIGLVFMAFGPGYSYSLIRLLYGEKWS 307

Query: 180 DGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ 239
           DGEAS AL++YCLY++VLAMNGTSEAFLHA+ TEDQLKRSND LLVFSV+YI +N++LI+
Sbjct: 308 DGEASVALQFYCLYIIVLAMNGTSEAFLHAIGTEDQLKRSNDMLLVFSVLYITLNILLIR 367

Query: 240 SAGSVGLILANSLNMILRIIYSAIFIKHYFQG--SSSFSFRSSLPSGWPILLVSGVITLF 297
           SAG++GLILANSLNMI RIIYS  FI+ YFQG  SSSFSFR   PSGW +L++SG+IT+ 
Sbjct: 368 SAGAIGLILANSLNMIFRIIYSGQFIQRYFQGDPSSSFSFRECFPSGWQVLILSGIITVI 427

Query: 298 SERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHK 348
           SE+  LD+++FWATF +HF++G  CFC+S+IVIY RE  FI +IIRFRNH 
Sbjct: 428 SEKTILDQKNFWATFPVHFAIGFLCFCVSAIVIYRRETLFINRIIRFRNHD 478

Source: Sisymbrium irio

Species: Sisymbrium irio

Genus: Sisymbrium

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458359|ref|XP_004146915.1| PREDICTED: protein RFT1 homolog [Cucumis sativus] gi|449520289|ref|XP_004167166.1| PREDICTED: protein RFT1 homolog [Cucumis sativus]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 259/349 (74%), Positives = 302/349 (86%), Gaps = 1/349 (0%)

Query: 1   MCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDK 60
           M IL+V+   MEKGI+FALSQ AY A LFLGYW YFL F AFK SDLFPFR+GNM  +DK
Sbjct: 181 MYILLVRGSNMEKGIIFALSQSAYGACLFLGYWVYFLNFRAFKWSDLFPFRVGNMKDFDK 240

Query: 61  QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEES 120
           +L+NMC LFT QSFRKL+LQEGEK+VLVWLDTPYNQAVYGLVDKLGSLVVR+VFLPFEES
Sbjct: 241 KLSNMCILFTLQSFRKLVLQEGEKMVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEES 300

Query: 121 SYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSD 180
           SY TFARSASG+YP K++K+   L+EALKLV+LIGL+FMAFGPSYSY+L+RLLYG+KWSD
Sbjct: 301 SYTTFARSASGEYPDKTRKLAICLSEALKLVVLIGLIFMAFGPSYSYALIRLLYGQKWSD 360

Query: 181 GEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQS 240
           GEA TALRYYCLY++VLAMNGTSEAFLHAVA E QLK+SNDSLL+FS IY+++N +LI+S
Sbjct: 361 GEAPTALRYYCLYIIVLAMNGTSEAFLHAVANESQLKKSNDSLLLFSFIYVMLNFLLIRS 420

Query: 241 AGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSER 300
           +G VGLI ANS+NMILRI YSAIFIK YF+ + SFSF S LPSGW  LL+SGV+TL SER
Sbjct: 421 SGVVGLIFANSINMILRITYSAIFIKGYFK-NPSFSFNSCLPSGWIFLLLSGVLTLISER 479

Query: 301 IFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD 349
           +FLD+Q FW+TF +HFS+GL CF +S  +IY RERSF  KI+RFR H D
Sbjct: 480 LFLDQQKFWSTFSLHFSIGLACFLVSLCIIYRRERSFFNKIVRFRQHSD 528

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260690|gb|AAR15504.1| nuclear division RFT1-like protein [Arabidopsis arenosa]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 252/348 (72%), Positives = 298/348 (85%), Gaps = 2/348 (0%)

Query: 4   LIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLA 63
           LIV Q  MEKGIVFALSQVAY  SLFLGYW YFL+ GA ++SDLFPFR GN M +D +L+
Sbjct: 131 LIVNQTNMEKGIVFALSQVAYGGSLFLGYWAYFLISGALRSSDLFPFRPGNFMDFDNKLS 190

Query: 64  NMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYA 123
           NMC LFTFQSFRKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVF PFEE+SY 
Sbjct: 191 NMCMLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFFPFEETSYT 250

Query: 124 TFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEA 183
            FAR ASG Y ++ KK+G  L EALKLV+LIGL+FMAFGPSYSYSL+RLLYG+KWSDGEA
Sbjct: 251 IFARFASGDYQERKKKLGIGLTEALKLVILIGLIFMAFGPSYSYSLIRLLYGEKWSDGEA 310

Query: 184 STALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGS 243
           S AL++YCLY++VLAMNGTSEAFLHAV TE++LKRSND LLVFS+IY+ +N++LI+SAG+
Sbjct: 311 SLALQFYCLYIIVLAMNGTSEAFLHAVGTENELKRSNDMLLVFSLIYVTLNILLIRSAGA 370

Query: 244 VGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFL 303
           +GLI+ANSLNMI RIIYS  FI+ YFQG+SSFSFR   P GW IL++S +ITL SE+  L
Sbjct: 371 IGLIMANSLNMIFRIIYSGKFIQRYFQGTSSFSFRKCFPLGWQILILSSIITLISEKTIL 430

Query: 304 DRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFR--NHKD 349
           DR++FW TF +HF++G  CFC+S+IVIY RER FI +IIRFR  NH D
Sbjct: 431 DRKNFWETFPLHFAIGFICFCLSAIVIYRRERVFIKRIIRFRDYNHDD 478

Source: Arabidopsis arenosa

Species: Arabidopsis arenosa

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260636|gb|AAR15453.1| nuclear division RFT1-like protein [Arabidopsis arenosa]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 252/348 (72%), Positives = 298/348 (85%), Gaps = 2/348 (0%)

Query: 4   LIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLA 63
           LIV Q  MEKGIVFALSQVAY  SLFLGYW YFL+ GA ++SDLFPFR GN M +D +L+
Sbjct: 131 LIVNQTNMEKGIVFALSQVAYGGSLFLGYWTYFLISGALRSSDLFPFRPGNFMDFDNKLS 190

Query: 64  NMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYA 123
           NMC LFTFQSFRKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVF PFEE+SY 
Sbjct: 191 NMCMLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFFPFEETSYT 250

Query: 124 TFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEA 183
            FAR ASG Y ++ KK+G  L EALKLV+LIGL+FMAFGPSYSYSL+RLLYG+KWSDGEA
Sbjct: 251 IFARFASGDYQERKKKLGIGLTEALKLVILIGLIFMAFGPSYSYSLIRLLYGEKWSDGEA 310

Query: 184 STALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGS 243
           S AL++YCLY++VLAMNGTSEAFLHAV TE++LKRSND LLVFS+IY+ +N++LI+SAG+
Sbjct: 311 SLALQFYCLYIIVLAMNGTSEAFLHAVGTENELKRSNDMLLVFSLIYVTLNILLIRSAGA 370

Query: 244 VGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFL 303
           +GLI+ANSLNMI RIIYS  FI+ YFQG+SSFSFR   P GW IL++S +ITL SE+  L
Sbjct: 371 IGLIMANSLNMIFRIIYSGKFIQRYFQGTSSFSFRKCFPLGWQILILSSIITLISEKTIL 430

Query: 304 DRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFR--NHKD 349
           DR++FW TF +HF++G  CFC+S+IVIY RER FI +IIRFR  NH D
Sbjct: 431 DRKNFWETFPLHFAIGFICFCLSAIVIYRRERVFIKRIIRFRDYNHDD 478

Source: Arabidopsis arenosa

Species: Arabidopsis arenosa

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806793|ref|XP_002871280.1| hypothetical protein ARALYDRAFT_325378 [Arabidopsis lyrata subsp. lyrata] gi|297317117|gb|EFH47539.1| hypothetical protein ARALYDRAFT_325378 [Arabidopsis lyrata subsp. lyrata]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 251/348 (72%), Positives = 297/348 (85%), Gaps = 2/348 (0%)

Query: 4   LIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLA 63
           LIV Q  MEKGIVFALSQVAY  SLFLGYW YFL+ G  ++SDLFPFR GN M +D +L+
Sbjct: 131 LIVNQTNMEKGIVFALSQVAYGGSLFLGYWAYFLICGVLRSSDLFPFRPGNFMDFDNKLS 190

Query: 64  NMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYA 123
           NMC LFTFQSFRKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVF PFEE+SY 
Sbjct: 191 NMCMLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFFPFEETSYT 250

Query: 124 TFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEA 183
            FAR ASG Y ++ KK+G  L EALKLV+LIGL+FMAFGPSYSYSL+RLLYG+KWSDGEA
Sbjct: 251 IFARFASGDYQERKKKLGIGLTEALKLVILIGLIFMAFGPSYSYSLIRLLYGEKWSDGEA 310

Query: 184 STALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGS 243
           S AL++YCLY++VLAMNGTSEAFLHAV TE++LKRSND LLVFS+IY+ +N++LI+SAG+
Sbjct: 311 SLALQFYCLYIIVLAMNGTSEAFLHAVGTENELKRSNDMLLVFSLIYVALNILLIRSAGA 370

Query: 244 VGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFL 303
           +GLI+ANSLNMI RIIYS  FI+HYFQG+SSFSFR   P GW IL++S +ITL SE+  L
Sbjct: 371 IGLIMANSLNMIFRIIYSGKFIQHYFQGTSSFSFRKCFPLGWQILILSSIITLISEKTIL 430

Query: 304 DRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFR--NHKD 349
           DR++FW TF +HF++G  CFC+S+IVIY RER FI +II FR  NH D
Sbjct: 431 DRKNFWETFPLHFAIGFICFCLSAIVIYRRERVFIKRIIHFRDYNHDD 478

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260654|gb|AAR15470.1| nuclear division RFT1-like protein [Capsella rubella]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 246/351 (70%), Positives = 300/351 (85%), Gaps = 2/351 (0%)

Query: 1   MCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDK 60
           +C L+V Q  MEK I+FALSQVAY  SLFLGYW YFL+ G +++SDLFPFR GN+M++D+
Sbjct: 128 LCSLLVMQTNMEKVIIFALSQVAYGGSLFLGYWAYFLICGVYRSSDLFPFRPGNLMNFDR 187

Query: 61  QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEES 120
           QL+NM  LFTFQSFRKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVFLPFEES
Sbjct: 188 QLSNMSMLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFLPFEES 247

Query: 121 SYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSD 180
           SYATFAR ASG + ++ KK+G  L EALK V+LIGL+FMAFGPSYSYSL+RLLYG+KWSD
Sbjct: 248 SYATFARFASGDHQERKKKLGICLTEALKFVILIGLIFMAFGPSYSYSLIRLLYGEKWSD 307

Query: 181 GEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQS 240
           GEAS AL++YCLY++VLAMNGTSEAFLHAV +E++L+RSND LLVFS++Y+ +N++LI+S
Sbjct: 308 GEASLALQFYCLYIIVLAMNGTSEAFLHAVGSENELQRSNDMLLVFSLVYVTLNILLIRS 367

Query: 241 AGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSER 300
           AG++GLI+ANSLNMI RIIYS  FI+ YFQG+SSFSFR   P GW IL++S +ITL SE+
Sbjct: 368 AGAIGLIMANSLNMIFRIIYSGKFIQRYFQGTSSFSFRKCFPLGWQILILSSIITLISEK 427

Query: 301 IFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFR--NHKD 349
             L R +FW TF +HF++G  CFC+S+IVIY RER FI +II FR  NH D
Sbjct: 428 TVLHRMNFWGTFPLHFAIGFICFCVSAIVIYRRERLFIKRIIHFRDYNHDD 478

Source: Capsella rubella

Species: Capsella rubella

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187490|ref|NP_196380.5| lipid transporter [Arabidopsis thaliana] gi|332003804|gb|AED91187.1| lipid transporter [Arabidopsis thaliana]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/348 (69%), Positives = 295/348 (84%), Gaps = 2/348 (0%)

Query: 4   LIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLA 63
           L+V Q  MEK I+FALSQVAY  SLF+GYW YFL+ G +++S+LFPFR GN M +D  L+
Sbjct: 264 LLVMQTNMEKVIIFALSQVAYGGSLFIGYWAYFLICGVYRSSNLFPFRPGNFMDFDNDLS 323

Query: 64  NMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYA 123
            MC LFTFQSFRKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLGSLVVRMVFLPFEESSY 
Sbjct: 324 KMCKLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGSLVVRMVFLPFEESSYT 383

Query: 124 TFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEA 183
            FAR ASG Y +++KK+G  L  ALKLV+LIGL+FMAFGPSYSYSL+RLLYG+KWSDGEA
Sbjct: 384 IFARFASGDYQERNKKLGIYLTVALKLVILIGLIFMAFGPSYSYSLIRLLYGEKWSDGEA 443

Query: 184 STALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGS 243
           S AL++YCLY++VLAMNGTSEAFLHAV T+++L+RSND LL+FS+IY+ +N++LI+SAG+
Sbjct: 444 SLALQFYCLYIIVLAMNGTSEAFLHAVGTKNELERSNDMLLIFSLIYVALNILLIRSAGA 503

Query: 244 VGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFL 303
           +GLI+ANSLNMI RIIYS  FI+ YFQG+SSFSFR   P GW IL++S +ITL SE+  L
Sbjct: 504 IGLIMANSLNMIFRIIYSGRFIQRYFQGTSSFSFRKCFPLGWQILILSSIITLISEKTIL 563

Query: 304 DRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFR--NHKD 349
           DR++FW TF +HF +G+ CFC+S+IVIY RER FI +I RFR  NH D
Sbjct: 564 DRKNFWETFPLHFGIGVICFCLSAIVIYRRERVFIKRIKRFRDYNHDD 611

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
UNIPROTKB|F1P5L5	535	RFT1 "Uncharacterized protein"	0.822	0.536	0.363	7e-38
DICTYBASE|DDB_G0288491	540	rft1 "RFT1 family protein" [Di	0.340	0.220	0.436	2e-37
ZFIN|ZDB-GENE-110411-126	540	rft1 "RFT1 homolog (S. cerevis	0.845	0.546	0.346	2.4e-37
UNIPROTKB|E1BNC6	541	RFT1 "Uncharacterized protein"	0.842	0.543	0.339	1.2e-35
UNIPROTKB|E2RQ01	541	RFT1 "Uncharacterized protein"	0.836	0.539	0.353	2.4e-35
UNIPROTKB|B5MDE0	502	RFT1 "Protein RFT1 homolog" [H	0.802	0.557	0.360	3.1e-35
UNIPROTKB|Q96AA3	541	RFT1 "Protein RFT1 homolog" [H	0.802	0.517	0.360	3.1e-35
RGD|1562654	541	Rft1 "RFT1 homolog (S. cerevis	0.782	0.504	0.362	3.1e-35
MGI|MGI:3607791	541	Rft1 "RFT1 homolog (S. cerevis	0.782	0.504	0.358	5.1e-35
SGD|S000000116	574	RFT1 "Membrane protein require	0.785	0.477	0.308	3.9e-30

UNIPROTKB|F1P5L5 RFT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 112/308 (36%), Positives = 162/308 (52%)

Query:    52 LGNMMSYDKQLAN-----MCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDK 104
             L N+M+ DK   N     +   F  QSF K +L EGE+ V+ +L+     +Q VY  V+ 
Sbjct:   220 LPNLMA-DKTFLNWKEARLTWSFFKQSFLKQILTEGERYVMTFLNVINFGDQGVYDAVNN 278

Query:   105 LGSLVVRMVFLPFEESSYATFARSAS-GQYPQKSKK-----IGNSLAEALKLVLLIGLVF 158
             LGSLV R +FLP EES Y  FA+    G+  +  K+       N L   LKLVLLIGL  
Sbjct:   279 LGSLVARFIFLPIEESFYVFFAQVLERGKNVKDQKQDDVAMAANVLELLLKLVLLIGLTI 338

Query:   159 MAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 218
               FG ++S   + +  G   S G     LR Y LYV+ LA+NG +E F  A   ++++ R
Sbjct:   339 AVFGYAFSQLALDIYGGSMLSSGTGPDLLRCYSLYVLFLAVNGVTECFTFASMCKEEVDR 398

Query:   219 SNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGXXXXXXX 278
              N  +L  S  ++ ++  L +  GSVG ILAN  NM +RI +S  +I  YF+        
Sbjct:   399 YNFVMLALSFTFLCISYFLTRWHGSVGFILANCFNMGIRIAHSIHYIYGYFKESSYRPLT 458

Query:   279 XXLPSGWPIL--LVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERS 336
               LPS + +L  ++SG IT++SE  F   +  W   LIH S+G  CF  +++ +   E  
Sbjct:   459 GLLPSPFLVLAYIISGGITVYSEAFFCCDKG-WTARLIHISIGALCFAATTVTMLCTET- 516

Query:   337 FIYKIIRF 344
                K++RF
Sbjct:   517 ---KLVRF 521

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0288491 rft1 "RFT1 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 261 (96.9 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
 Identities = 52/119 (43%), Positives = 76/119 (63%)

Query:   138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVL 197
             K   N L   +K ++L+ LVF  FGP +S+ L+ LLY  K+ D  A   L +YC+YV  L
Sbjct:   348 KNGANVLIVIMKFLILVSLVFTCFGPGFSHLLLNLLYNNKFRDTNAGVLLGFYCIYVGFL 407

Query:   198 AMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMIL 256
             A+NG SE+F+H+VA EDQLK  N  L++   IY++  +I  +   ++G+ILAN LN+ L
Sbjct:   408 AINGVSESFVHSVAKEDQLKTVNWVLIIIGFIYLLFTLIFCKLFQNIGIILANCLNIKL 466

GO:0016021 "integral to membrane" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-110411-126 rft1 "RFT1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 106/306 (34%), Positives = 162/306 (52%)

Query:    43 KTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYG 100
             + +DL P ++ +    + +L  +   F  QSF K +L EGE+ V+ +L+     +Q VY 
Sbjct:   220 RMTDLLPSKVDHEPLLNWKLTTLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYD 279

Query:   101 LVDKLGSLVVRMVFLPFEESSYATFARSAS-GQYPQKSKKIGNSLAEA-----LKLVLLI 154
             +++ LGS+V R +FLP EES Y  FA+    G+  Q  K+   S+A       LKLVLLI
Sbjct:   280 IINNLGSMVARFLFLPIEESFYVFFAKVLERGRDVQHQKQEEVSMAAEVLECLLKLVLLI 339

Query:   155 GLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATED 214
             GL+   FG +YS+  + +  G+  S+G     LR Y  YV++LA+NG +E F+ A  +++
Sbjct:   340 GLIITVFGYAYSHLALDIYGGELLSNGAGPALLRCYSCYVLLLAINGVTECFVFAAMSKE 399

Query:   215 QLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGXXX 274
             ++ R N  +L  S  +++++  L    G VG ILAN  NM LRI +S ++I+ YF     
Sbjct:   400 EVDRYNLVMLGLSASFLLLSYWLTWMFGGVGFILANCCNMALRITHSIVYIRQYFLQSEH 459

Query:   275 XXXXXXLP-SGWPILL-VSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYH 332
                    P S   + L VS VIT FSE +F      W   L H +VG  C     I ++ 
Sbjct:   460 RPLWGLRPHSAVLVALGVSAVITAFSESVFCC-DGGWLLRLFHVAVGAVCLLTVVITVFL 518

Query:   333 RERSFI 338
              E   +
Sbjct:   519 TETRLV 524

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

UNIPROTKB|E1BNC6 RFT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 105/309 (33%), Positives = 160/309 (51%)

Query:    43 KTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYG 100
             + +DL P    +    + + A +   F  QSF K +L EGE+ V+ +L+     +Q VY 
Sbjct:   220 RMTDLLPSMTRSRAFVNWEEAKLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYD 279

Query:   101 LVDKLGSLVVRMVFLPFEESSYATFARSASGQYP---QKSKKIGNS---LAEALKLVLLI 154
             +V+ LGSLV R++F P EES Y  FA+    +     QK + +  +   L   LKL LL 
Sbjct:   280 IVNNLGSLVARLLFQPIEESFYIFFAKVLEREKDATLQKQEDVAVAAVVLESLLKLALLT 339

Query:   155 GLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATED 214
             GL    FG +YS  ++ +  G   S G     LR YCLYV++LA+NG +E F  A  ++ 
Sbjct:   340 GLTITVFGFAYSQLVLDIYGGAMLSSGSGPVLLRAYCLYVLLLAINGVTECFTFAAMSKA 399

Query:   215 QLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGXXX 274
             ++ R N ++L  S  +++++ +L +  GSVG ILAN  NM +RI+ S  FI  Y++    
Sbjct:   400 EVDRYNFTMLALSSSFLMLSYVLTRWCGSVGFILANCFNMGIRIMQSLYFIYRYYRKSPH 459

Query:   275 XXXXXXLPSGWPILL----VSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVI 330
                     S  P+LL    +SG IT  SE +FL  +  W   L H +VG  C  ++    
Sbjct:   460 RPLDGLFLS--PVLLGTFALSGGITAVSE-VFLCCERGWLARLAHIAVGALCLGVTLGTA 516

Query:   331 YHRERSFIY 339
             +  E   I+
Sbjct:   517 FLTETKLIH 525

GO:0016021 "integral to membrane" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

UNIPROTKB|E2RQ01 RFT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 110/311 (35%), Positives = 164/311 (52%)

Query:    43 KTSDLFPF--RLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAV 98
             + +DL P   R G  +++ +  A +   F  QSF K +L EGE+ ++ +L+     +Q V
Sbjct:   220 RMTDLLPSITRSGAFVNWKE--AKLTWSFFKQSFLKQILTEGERYIMTFLNVLNFGDQGV 277

Query:    99 YGLVDKLGSLVVRMVFLPFEESSYATFARSAS-GQYP--QKSKKIGNSLA--EAL-KLVL 152
             Y +V+ LGSLV R++F P EES Y  FA+    G+    QK + +  + A  E+L KL L
Sbjct:   278 YDIVNNLGSLVARLIFQPIEESFYIFFAKVLERGKDATLQKQEDVAVAAAVLESLLKLAL 337

Query:   153 LIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVAT 212
             L GL    FG +YS   + +  G   S G     LR YCLYV++LA+NG +E F  A  +
Sbjct:   338 LAGLTITIFGFAYSQLALDIYGGAMLSSGSGPVLLRSYCLYVLLLAINGVTECFTFAAMS 397

Query:   213 EDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGX 272
             ++++ R N ++L  S  ++V++ +L Q  GSVG ILAN  NM +RI  S  FI  Y++  
Sbjct:   398 KEEVDRYNFTMLALSSSFLVLSYLLTQWCGSVGFILANCFNMGIRITQSLCFIHRYYRKS 457

Query:   273 XXXXXXXXLPSGWPILL----VSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSI 328
                       S  P LL    +SG IT  SE +FL  +  W   L H +VG  C  ++  
Sbjct:   458 PHRPLAGLYLS--PALLGAFVLSGGITGVSE-VFLCCEQGWLARLAHVAVGAFCLGMTFG 514

Query:   329 VIYHRERSFIY 339
               +  E   I+
Sbjct:   515 TAFLTETKLIH 525

GO:0016021 "integral to membrane" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

UNIPROTKB|B5MDE0 RFT1 "Protein RFT1 homolog" [Homo sapiens (taxid:9606)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 107/297 (36%), Positives = 158/297 (53%)

Query:    43 KTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYG 100
             + +DL P    N    + + A +   F  QSF K +L EGE+ V+ +L+     +Q VY 
Sbjct:   181 RITDLLPNITRNGAFINWKEAKLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYD 240

Query:   101 LVDKLGSLVVRMVFLPFEESSYATFARSAS-GQYP--QKSKKIGNSLA--EAL-KLVLLI 154
             +V+ LGSLV R++F P EES Y  FA+    G+    QK + +  + A  E+L KL LL 
Sbjct:   241 IVNNLGSLVARLIFQPIEESFYIFFAKVLERGKDATLQKQEDVAVAAAVLESLLKLALLA 300

Query:   155 GLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATED 214
             GL    FG +YS   + +  G   S G     LR YCLYV++LA+NG +E F  A  +++
Sbjct:   301 GLTITVFGFAYSQLALDIYGGTMLSSGSGPVLLRSYCLYVLLLAINGVTECFTFAAMSKE 360

Query:   215 QLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGXXX 274
             ++ R N  +L  S  ++V++ +L +  GSVG ILAN  NM +RI  S  FI  Y++    
Sbjct:   361 EVDRYNFVMLALSSSFLVLSYLLTRWCGSVGFILANCFNMGIRITQSLCFIHRYYRRSPH 420

Query:   275 XXXXXXLPSGWPILL----VSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISS 327
                     S  P+LL    +SG +T  SE +FL  +  W   L H +VG   FC+ +
Sbjct:   421 RPLAGLHLS--PVLLGTFALSGGVTAVSE-VFLCCEQGWPARLAHIAVG--AFCLGA 472

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96AA3 RFT1 "Protein RFT1 homolog" [Homo sapiens (taxid:9606)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 107/297 (36%), Positives = 158/297 (53%)

Query:    43 KTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYG 100
             + +DL P    N    + + A +   F  QSF K +L EGE+ V+ +L+     +Q VY 
Sbjct:   220 RITDLLPNITRNGAFINWKEAKLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYD 279

Query:   101 LVDKLGSLVVRMVFLPFEESSYATFARSAS-GQYP--QKSKKIGNSLA--EAL-KLVLLI 154
             +V+ LGSLV R++F P EES Y  FA+    G+    QK + +  + A  E+L KL LL 
Sbjct:   280 IVNNLGSLVARLIFQPIEESFYIFFAKVLERGKDATLQKQEDVAVAAAVLESLLKLALLA 339

Query:   155 GLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATED 214
             GL    FG +YS   + +  G   S G     LR YCLYV++LA+NG +E F  A  +++
Sbjct:   340 GLTITVFGFAYSQLALDIYGGTMLSSGSGPVLLRSYCLYVLLLAINGVTECFTFAAMSKE 399

Query:   215 QLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGXXX 274
             ++ R N  +L  S  ++V++ +L +  GSVG ILAN  NM +RI  S  FI  Y++    
Sbjct:   400 EVDRYNFVMLALSSSFLVLSYLLTRWCGSVGFILANCFNMGIRITQSLCFIHRYYRRSPH 459

Query:   275 XXXXXXLPSGWPILL----VSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISS 327
                     S  P+LL    +SG +T  SE +FL  +  W   L H +VG   FC+ +
Sbjct:   460 RPLAGLHLS--PVLLGTFALSGGVTAVSE-VFLCCEQGWPARLAHIAVG--AFCLGA 511

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006488 "dolichol-linked oligosaccharide biosynthetic process" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

RGD|1562654 Rft1 "RFT1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 105/290 (36%), Positives = 151/290 (52%)

Query:    63 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEES 120
             A +   F  QSF K +L EGE+ V+ +L+     +Q +Y +V+ LGSLV R++F P EES
Sbjct:   240 ARLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGIYDIVNNLGSLVARLIFQPVEES 299

Query:   121 SYATFAR------SASGQYPQKSKKIGNSLAEAL-KLVLLIGLVFMAFGPSYSYSLVRLL 173
              Y  FA+       AS Q  Q    +  ++ E+L KL LL GL    FG +YS   + + 
Sbjct:   300 FYIFFAKVLEREKDASLQ-KQDDVAVAAAVLESLLKLALLTGLTVTVFGFAYSQLALDIY 358

Query:   174 YGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVM 233
              G   S G     +R YCLYV++LA+NG +E F  A  +++ + R N ++L  S  ++V+
Sbjct:   359 GGAMLSSGSGPVLMRCYCLYVLLLAVNGVTECFTFAAMSKEDVDRYNFTMLALSSSFLVL 418

Query:   234 NVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGXXXXXXXXXLPSGWPILL---- 289
             + +L    GSVG I+AN  NM +RI  S  FI HYFQ          L S  P+LL    
Sbjct:   419 SYLLTSWCGSVGFIMANCFNMGIRITQSLSFIHHYFQESPHRPLAGLLLS--PVLLGVFV 476

Query:   290 VSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIY 339
             +S  IT  SE  FL  +  W   L H +VG  C  ++    +  E   I+
Sbjct:   477 LSAGITSVSEA-FLCCERGWPARLAHIAVGTICLGVTLGTAFLTETKLIH 525

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:3607791 Rft1 "RFT1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 104/290 (35%), Positives = 152/290 (52%)

Query:    63 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEES 120
             A +   F  QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES
Sbjct:   240 AGLAWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPVEES 299

Query:   121 SYATFAR------SASGQYPQKSKKIGNSLAEAL-KLVLLIGLVFMAFGPSYSYSLVRLL 173
              Y  FA+       AS Q  Q    +  ++ E+L KL LL GL    FG +YS   + + 
Sbjct:   300 FYLFFAKVLEREKDASLQ-KQDDVAVAAAVLESLLKLALLTGLTMTVFGFAYSQLALDIY 358

Query:   174 YGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVM 233
              G   S G     +R YCLYV++LA+NG +E F+ A  +++++ R N ++L  S  ++V+
Sbjct:   359 GGAMLSSGSGPVLMRCYCLYVLLLAINGVTECFMFAAMSKEEVDRYNFTMLALSSSFLVL 418

Query:   234 NVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGXXXXXXXXXLPSGWPILL---- 289
             + +L    GSVG I+AN  NM +RI  S  FI HYF+            S  P+LL    
Sbjct:   419 SYLLTSWCGSVGFIMANCFNMGIRITQSLSFIHHYFRESPHRPLAGLRLS--PVLLGVFI 476

Query:   290 VSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIY 339
             +S  IT  SE  FL  +  W   L H +VG  C  ++    +  E   I+
Sbjct:   477 LSAGITSVSEA-FLCCERGWPARLAHIAVGTICLGVTLGTAFLTETKLIH 525

GO:0003674 "molecular_function" evidence=ND

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

SGD|S000000116 RFT1 "Membrane protein required for translocation of Man5GlcNac2-PP-Dol" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 338 (124.0 bits), Expect = 3.9e-30, P = 3.9e-30
 Identities = 88/285 (30%), Positives = 148/285 (51%)

Query:    71 FQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSAS 130
             FQ   K LL EG+KL++  L T   Q +Y L+   GSL+ R++F P EES     AR  S
Sbjct:   294 FQLCFKHLLTEGDKLIINSLCTVEEQGIYALLSNYGSLLTRLLFAPIEESLRLFLARLLS 353

Query:   131 GQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYY 190
                P+  K     L    +  + + L+ + FGP+ S  L++ L G KWS       +R Y
Sbjct:   354 SHNPKNLKLSIEVLVNLTRFYIYLSLMIIVFGPANSSFLLQFLIGSKWSTTSVLDTIRVY 413

Query:   191 CLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAG-SV-GLIL 248
             C Y+  L++NG  EAF  +VAT DQ+ + +  ++ FS I+++ + +LI+    S+ GLIL
Sbjct:   414 CFYIPFLSLNGIFEAFFQSVATGDQILKHSYFMMAFSGIFLLNSWLLIEKLKLSIEGLIL 473

Query:   249 ANSLNMILRIIYSAIFIKHYFQGXXXXXXXXXLPSGWPILLVSGVITLFSERIFLDRQDF 308
             +N +NM+LRI+Y  +F+  + +              +  ++++G      +  F+     
Sbjct:   474 SNIINMVLRILYCGVFLNKFHRELFTDSSFFFNFKDFKTVIIAGSTICLLDWWFIGYVKN 533

Query:   309 WATFLIH--FSVGLTCFCISSIVIYHRE--RSFIYKIIRFRNHKD 349
                F+++  F++GL    ++ I++  R+  +SFI K     N KD
Sbjct:   534 LQQFVVNVLFAMGL----LALILVKERQTIQSFINKRA-VSNSKD 573

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0034202 "glycolipid-translocating activity" evidence=IDA;IMP

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;IGI;IMP

GO:0034203 "glycolipid translocation" evidence=IGI;IMP

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.29.62.1 hypothetical protein (474 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	349
cd13130	441	cd13130, MATE_rft1, Rft1-like subfamily of the mul	1e-127
pfam04506	533	pfam04506, Rft-1, Rft protein	1e-49
cd13124	434	cd13124, MATE_SpoVB_like, Stage V sporulation prot	6e-05

>gnl|CDD|240535 cd13130, MATE_rft1, Rft1-like subfamily of the multidrug and toxic compound extrusion family (MATE)

 Score =  372 bits (956), Expect = e-127
 Identities = 179/272 (65%), Positives = 208/272 (76%), Gaps = 3/272 (1%)

Query: 3   ILIVKQYEME-KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQ 61
           ILIV     E K +VFAL Q+AY   LF GYW YFL     K S LFP R  N+M +DK 
Sbjct: 170 ILIVLGTGKEPKVLVFALGQLAYGVCLFFGYWYYFLQCFVSKKSSLFPLRNSNLMFFDKP 229

Query: 62  LANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESS 121
              MC LFT QSF K LL EG+K+VLVW DTPYNQ VY LVD  GSLVVR+VFLPFEESS
Sbjct: 230 TLRMCGLFTIQSFFKHLLTEGDKIVLVWFDTPYNQGVYALVDNYGSLVVRIVFLPFEESS 289

Query: 122 YATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDG 181
           Y TFAR AS + P+  KK+GNSL EALKL   +GLV +AFGPSYSYSL+RLLYG++WSDG
Sbjct: 290 YTTFARLASEKNPKALKKLGNSLTEALKLYSYVGLVAIAFGPSYSYSLLRLLYGERWSDG 349

Query: 182 EASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ-- 239
           EA  AL  YCLY+  LA+NGTSEAFLH+VATE+QL+R N  LLVFSVIY+++NV+LI+  
Sbjct: 350 EAPDALGVYCLYIPFLALNGTSEAFLHSVATEEQLQRQNVWLLVFSVIYLILNVLLIRWF 409

Query: 240 SAGSVGLILANSLNMILRIIYSAIFIKHYFQG 271
           S G+VGLILAN LNM+LRI YS +FIKHYF+G
Sbjct: 410 SLGAVGLILANILNMLLRIGYSLVFIKHYFKG 441

This eukaryotic family may function as a transporter, shuttling phospholipids, lipopolysaccharides or oligosaccharides from cytoplasmic to the lumenal side of the endoplasmic reticulum. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. Length = 441

>gnl|CDD|218119 pfam04506, Rft-1, Rft protein

 Score =  173 bits (440), Expect = 1e-49
 Identities = 113/351 (32%), Positives = 167/351 (47%), Gaps = 23/351 (6%)

Query: 8   QYEMEKGIV---FALSQVA-YAASLFLGYWGYFLLFGAFKTSDLFP--FRLGNMMSYDKQ 61
           QY  +K I    FAL  +A    +  +     F  F     SD  P          +D+ 
Sbjct: 185 QYIRKKAIAYLLFALGALAIKITNKSIYELEQFSPF-----SDFLPKVSENKKSYFFDRD 239

Query: 62  LANMCTLFTFQSFRKLLLQEGEKLVLVW--LDTPYNQAVYGLVDKLGSLVVRMVFLPFEE 119
             +       QS  K LL EG+K V+ +  L +   QAVY LV   GSL+ R +F P EE
Sbjct: 240 SLHAVFSMFSQSILKQLLTEGDKYVMTFTELLSLKEQAVYDLVSNYGSLLARTIFRPIEE 299

Query: 120 SSYATFARSASG------QYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLL 173
           SS A FA++ S       +     K   + L+  L +V  IGLV + FG  YS  ++ L 
Sbjct: 300 SSNAYFAQTLSKENKKFNKNTDNHKDAVDVLSNLLHVVSYIGLVAITFGIPYSPVVLLLY 359

Query: 174 YGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVM 233
            G KWS+   ++ L +YC Y+  LA+NG +E F  A AT  Q+ +    +  FSVI++++
Sbjct: 360 GGSKWSENGGASLLSWYCGYIPFLAINGITEGFAMASATSRQIFKHGKFMFAFSVIFLII 419

Query: 234 NVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG-SSSFSFRSSLPSGWPILLVSG 292
           + +L    GS G ILAN +NM LRI+Y+  FI+HY++  S  FS           L VS 
Sbjct: 420 SYVLCVYLGSAGFILANIINMSLRILYNWRFIRHYYRDLSLDFSLVLPFGQTKIFLGVSL 479

Query: 293 VITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIR 343
           + TL +           + FL+H  +G  C     I +  R+   ++ +I 
Sbjct: 480 LATLVT-YWLFSTVPGLSYFLVHVLIGAVCLI--LIALDTRQHDSVFTVIV 527

Length = 533

>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins

 Score = 44.4 bits (106), Expect = 6e-05
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 13/136 (9%)

Query: 138 KKIGNSLAEALKLVLLIGL---VFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYV 194
           K++   + +AL+L LLIGL   V +A     +  +  LL+G    D E    L+     +
Sbjct: 308 KELRRRINQALRLTLLIGLPAAVGLAV---LAEPINTLLFG----DSEGGLILQILAPSI 360

Query: 195 VVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNM 254
           + L++   + A L  +    ++K    +LL+  ++ IV+N +LI   G  G  +A  +  
Sbjct: 361 LFLSLQQVTAAILQGL---GKVKIPVINLLIGLLVKIVLNYVLIPIFGIYGAAIATVIGF 417

Query: 255 ILRIIYSAIFIKHYFQ 270
           ++  + +   +K    
Sbjct: 418 LVAALLNLRALKKLLG 433

The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	349
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	100.0
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	100.0
PRK10459	492	colanic acid exporter; Provisional	99.71
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.46
COG2244	480	RfbX Membrane protein involved in the export of O-	99.39
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.3
PRK15099	416	O-antigen translocase; Provisional	99.21
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.04
PRK01766	456	multidrug efflux protein; Reviewed	98.55
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	98.5
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	98.38
PRK01766	456	multidrug efflux protein; Reviewed	98.36
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	98.31
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	98.29
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	98.18
PRK00187	464	multidrug efflux protein NorA; Provisional	98.14
TIGR01695	502	mviN integral membrane protein MviN. This model re	98.13
PRK10189	478	MATE family multidrug exporter; Provisional	98.04
PRK00187	464	multidrug efflux protein NorA; Provisional	98.0
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	97.82
PRK15099	416	O-antigen translocase; Provisional	97.75
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	97.61
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.58
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	97.55
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.47
COG0728	518	MviN Uncharacterized membrane protein, putative vi	97.36
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	97.32
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	97.19
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	97.16
PRK10189	478	MATE family multidrug exporter; Provisional	97.14
PRK10459	492	colanic acid exporter; Provisional	97.13
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	97.04
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	96.83
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	96.73
COG2244	480	RfbX Membrane protein involved in the export of O-	94.77
COG0728	518	MviN Uncharacterized membrane protein, putative vi	80.05

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.2e-80  Score=612.99  Aligned_cols=330  Identities=40%  Similarity=0.621  Sum_probs=287.9

Q ss_pred             EEEEeecCCchhHHHhHHHHHHHHHHHHHHHHHHHh-hc-------ccccccccccccCC--cccccHHHHHHHHHHHHH
Q 018885            3 ILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLL-FG-------AFKTSDLFPFRLGN--MMSYDKQLANMCTLFTFQ   72 (349)
Q Consensus         3 ~~~~~~~~~~~~l~Fa~gQl~ys~~l~~~Y~~~f~~-~~-------~~~~~~l~p~~~~~--~~~~~~~ll~l~~~~~~Q   72 (349)
                      ..+|++++++++++||+||++|++++++||++++.. .+       ..+.++++|+...+  ..+||+|+++++++++.|
T Consensus       172 a~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Q  251 (530)
T KOG2864|consen  172 AGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQ  251 (530)
T ss_pred             HHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccccHHHHHHHHHHHHH
Confidence            345788999999999999999999999877655543 33       23457899988765  678999999999999999


Q ss_pred             HHHHHHHhhhhhhhhhhcc--CCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHHHHHHHHHH
Q 018885           73 SFRKLLLQEGEKLVLVWLD--TPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKL  150 (349)
Q Consensus        73 si~K~lLTEGdk~vl~~~~--t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~~Lk~  150 (349)
                      +++||+||||||+||++..  +.+|||+||++||||||+||++|+||||++|.+|+|+++++++||.|++.++|.++||+
T Consensus       252 s~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLkl  331 (530)
T KOG2864|consen  252 SFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKL  331 (530)
T ss_pred             HHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Confidence            9999999999999999665  78899999999999999999999999999999999999999888889999999999999


Q ss_pred             HHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 018885          151 VLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIY  230 (349)
Q Consensus       151 ~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~f  230 (349)
                      +.++|++++.|||+||+.++++++|+||+++++|.+||+||.|||+||+|||+|||.+|+|+.+|+++||+.|+++|++|
T Consensus       332 v~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSvif  411 (530)
T KOG2864|consen  332 VIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIF  411 (530)
T ss_pred             HHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCChhhH---HHHHHHHHHhhhHhhhccch
Q 018885          231 IVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPI---LLVSGVITLFSERIFLDRQD  307 (349)
Q Consensus       231 l~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~~~~~~~~~~~p~~~~~---~~~s~~~~~~s~~~~~~~~~  307 (349)
                      ++.+|++++++|++|+|+|||+||.+||.||++||+||+++... +....+|...+.   +..++.        ++....
T Consensus       412 lilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~~l-d~~~~l~~~~~~~~~~~~~s~--------l~~~~~  482 (530)
T KOG2864|consen  412 LILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRHYYRDLSL-DRSLFLPFGPTLSIIFAGSSL--------LCCTTW  482 (530)
T ss_pred             HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-ChhhccCcchhHHHHHHhcch--------hhcccc
Confidence            99999999999999999999999999999999999999998422 122233332221   222221        121222


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018885          308 FWATFLIHFSVGLTCFCISSIVIYHRERSFIYKI  341 (349)
Q Consensus       308 ~~~~~~~hi~~g~~~~~~~~~~i~~~er~~i~~~  341 (349)
                      +......|+++|++|++.++..+++.|+++++.+
T Consensus       483 ~~s~l~~hi~igvvc~la~l~~~al~~~~~~~~~  516 (530)
T KOG2864|consen  483 WLSYLAAHIAIGVVCLLATLGSTALILVVFIVIL  516 (530)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2233456999999999999999999999999844

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=100.00  E-value=2.4e-78  Score=625.24  Aligned_cols=330  Identities=41%  Similarity=0.641  Sum_probs=278.7

Q ss_pred             CchhHHHhHHHHHHHHHHHHHHHHHHHhhcccccccccccccC---CcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 018885           11 MEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLG---NMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVL   87 (349)
Q Consensus        11 ~~~~l~Fa~gQl~ys~~l~~~Y~~~f~~~~~~~~~~l~p~~~~---~~~~~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl   87 (349)
                      ..++++||+||++|+++++.+|..... .+.++.++++|+...   +..++|+++++++++|+.||++||+||||||++|
T Consensus       202 ~~~~l~Falgq~~ys~~l~~~y~~~~~-~~~~~~s~~lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl  280 (549)
T PF04506_consen  202 GLAILAFALGQLAYSITLFFCYYWMYF-FPFKSFSDLLPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVL  280 (549)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHhhcc-CcccchhhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEE
Confidence            345889999999999999999865433 222334567776544   4677999999999999999999999999999999


Q ss_pred             hh--ccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhh------hhHHHHHHHHHHHHHHHHHHHH
Q 018885           88 VW--LDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS------KKIGNSLAEALKLVLLIGLVFM  159 (349)
Q Consensus        88 ~~--~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~------~~~~~~l~~~Lk~~~~igli~~  159 (349)
                      +.  ++|++|||+||+|||||||+||++||||||++|.+|||+++++++++.      +++.++|+.++|++.++|++++
T Consensus       281 ~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~  360 (549)
T PF04506_consen  281 SFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIV  360 (549)
T ss_pred             EeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99  999999999999999999999999999999999999999987654332      4577899999999999999999


Q ss_pred             hhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885          160 AFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ  239 (349)
Q Consensus       160 ~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~fl~~~~~l~~  239 (349)
                      +|||+||+.+|++++|+||++++++++||+||+|||+||+|||+|||++|+|+++|++++|+||+++|++|++++|++++
T Consensus       361 ~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~  440 (549)
T PF04506_consen  361 AFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTR  440 (549)
T ss_pred             HhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CccccccCCChhhHHHHHHHHHHhhhHhhhccchhhHHHHHHHH
Q 018885          240 S-AGSVGLILANSLNMILRIIYSAIFIKHYFQGSS-SFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFS  317 (349)
Q Consensus       240 ~-~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~~~-~~~~~~~~p~~~~~~~~s~~~~~~s~~~~~~~~~~~~~~~~hi~  317 (349)
                      + +|++|+|+|||+||++||+||++||+|||++.. +.+....+++...++..+...+.. +++..++++++.....|+.
T Consensus       441 ~~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  519 (549)
T PF04506_consen  441 WGLGAVGLILANCINMSLRIIYSLRFIRRYFRNSGPSFSLFLPLRPSKIVLIAAISSAIV-TYWFFGCTSFLSQFLIHIA  519 (549)
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccchhccHHHHHHHHHHHHHH-hheeccccchHHHHHHHHH
Confidence            5 999999999999999999999999999999853 333322222222223333333333 3333444556677789999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 018885          318 VGLTCFCISSIVIYHRERSFIYKIIRFRN  346 (349)
Q Consensus       318 ~g~~~~~~~~~~i~~~er~~i~~~~~~~~  346 (349)
                      +|++|+++    +..+||+.++.+++.++
T Consensus       520 ~g~~~l~~----i~~~er~~~~~~~~~~~  544 (549)
T PF04506_consen  520 VGVVCLLL----ILLEERQLLKLFIKKVK  544 (549)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            99988664    45589999999877664

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>PRK10459 colanic acid exporter; Provisional

Probab=99.71  E-value=1.3e-14  Score=146.94  Aligned_cols=236  Identities=16%  Similarity=0.141  Sum_probs=177.9

Q ss_pred             hhHHHhHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccC
Q 018885           13 KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDT   92 (349)
Q Consensus        13 ~~l~Fa~gQl~ys~~l~~~Y~~~f~~~~~~~~~~l~p~~~~~~~~~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t   92 (349)
                      +..++.+|+++.++...+.++....  ++     .-|+..-+ ...-|+++++..+.+..++.-++.++.|+++++.+.+
T Consensus       168 g~~~l~~~~~~~~~~~~l~~~~~~~--~~-----~~~~~~~~-~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg  239 (492)
T PRK10459        168 GALAAILGYLVNSSVRTLLFGYFGR--KI-----YRPALHFS-LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILG  239 (492)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhc--cc-----CCccceec-HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhc
Confidence            3566777777766544333322111  11     11221111 1123789999999999999999999999999999999


Q ss_pred             CccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHH
Q 018885           93 PYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGP-SYSYSLVR  171 (349)
Q Consensus        93 ~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~~Lk~~~~igli~~~fG~-~~s~~lL~  171 (349)
                      +++.|.|+.+.++.+++...+..++....+|.+|+..+  |+   ++.++.+...++....+++-+ .+|. ..++++++
T Consensus       240 ~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~--~~---~~~~~~~~~~~~~~~~~~~p~-~~~l~~~a~~ii~  313 (492)
T PRK10459        240 AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQD--DT---EKLRVGFLKLLSVLGIINFPL-LLGLMVVSNNFVP  313 (492)
T ss_pred             hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcC--CH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHH
Confidence            99999999999999999999888899999999999632  21   235566555666666555432 3344 88999999


Q ss_pred             HHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Q 018885          172 LLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANS  251 (349)
Q Consensus       172 ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~  251 (349)
                      +++|++|.++  .+++++.+.+..+.+++++......+.++++...+.+....+..++   ..+.+.+.+|..|..+|..
T Consensus       314 ll~g~~~~~a--~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~---~~~~~~~~~G~~g~a~a~~  388 (492)
T PRK10459        314 LVFGEKWNSA--IPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIP---AIVIGGQLAGLIGVALGFL  388 (492)
T ss_pred             HhcChhHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHH---HHHHHHhhccHHHHHHHHH
Confidence            9999999776  7899999999999999999999999999999877666544444443   3334667789999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018885          252 LNMILRIIYSAIFIKH  267 (349)
Q Consensus       252 ~nM~lRi~~s~~fI~~  267 (349)
                      +...+....+.++..|
T Consensus       389 i~~~~~~~~~~~~~~~  404 (492)
T PRK10459        389 LVQIINTILSYFLMIK  404 (492)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9988888888888744

>TIGR01695 mviN integral membrane protein MviN

Probab=99.46  E-value=1.3e-10  Score=117.47  Aligned_cols=204  Identities=15%  Similarity=0.118  Sum_probs=168.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885           59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  138 (349)
Q Consensus        59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~  138 (349)
                      -|+++++..+...+++.-++.+.-|+.+ +...+.++.|.|+.++++-.++.-.+..++..+..|..||...++|.++  
T Consensus       222 ~k~~l~~~~p~~~~~~~~~~~~~id~~~-~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~--  298 (502)
T TIGR01695       222 LKRFLKLFLPTTLGSSASQITLLINTAL-ASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE--  298 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--
Confidence            3789999999999999999999999977 6677788999999999998888878889999999999999987665444  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCC------CCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCC
Q 018885          139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK------WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVAT  212 (349)
Q Consensus       139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~k------W~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~  212 (349)
                       .++.....++....+++.........+++++++++|++      |..  +.+.++++|+..++.+++.+.....++.++
T Consensus       299 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~  375 (502)
T TIGR01695       299 -LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVM--TATILAAYGLGLIFYSLQKVLLRAFYARKD  375 (502)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHhccC
Confidence             66666667777777776655555588999999999863      433  377999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018885          213 EDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG  271 (349)
Q Consensus       213 ~~~l~~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~  271 (349)
                      ++.....+....   ++.+..++++...+|..|..+|..+...+.......+.+|..+.
T Consensus       376 ~~~~~~~~~~~~---~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~  431 (502)
T TIGR01695       376 TRTPFINSVISV---VLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRRLKG  431 (502)
T ss_pred             CccCHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            888777775544   34445566677889999999999999999999888888887654

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.39  E-value=5.4e-10  Score=112.71  Aligned_cols=202  Identities=17%  Similarity=0.255  Sum_probs=163.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhh
Q 018885           58 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  137 (349)
Q Consensus        58 ~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~  137 (349)
                      .-+++++.+..+...++...+.++.|+++++.+.++++-|.|+ +.+.-+-+...+..|+....+|..|+..++++.+  
T Consensus       211 ~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~-~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~--  287 (480)
T COG2244         211 LLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYS-AAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK--  287 (480)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH--
Confidence            3478999999999999999999999999999999999999999 8888888888999999999999999999876533  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHH
Q 018885          138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK  217 (349)
Q Consensus       138 ~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~  217 (349)
                       +.++.....+|....++..++..--..+++++.+++|++|.+.  .++++.+|...++..++++.....++...++...
T Consensus       288 -~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~--~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~  364 (480)
T COG2244         288 -ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASA--APILQLLALAGLFLSLVSLTSSLLQALGKQRLLL  364 (480)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccch--hHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence             3445555566766666654444444888899999999999985  7899999999999999999999999999998887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 018885          218 RSNDSLLVFSVIYIVMNVILIQSAGSVGLILAN--SLNMILRIIYSAIFIKHY  268 (349)
Q Consensus       218 ~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN--~~nM~lRi~~s~~fI~~~  268 (349)
                      +.+..-.   +..++.+++++..+|..|...|-  .+.+.+-..|......+.
T Consensus       365 ~~~~~~~---i~~~~l~~~li~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~  414 (480)
T COG2244         365 LISLISA---LLNLILNLLLIPRFGLIGAAIATASVIALALLLFYILRLRLVR  414 (480)
T ss_pred             HHHHHHH---HHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7776554   45556666688888888888887  344444444444444433

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.30  E-value=7.8e-10  Score=111.31  Aligned_cols=201  Identities=17%  Similarity=0.162  Sum_probs=160.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCC---------ccchhH-HHhhhhhhHHHHHHhhhhhhhhHHHHHhh
Q 018885           59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP---------YNQAVY-GLVDKLGSLVVRMVFLPFEESSYATFARS  128 (349)
Q Consensus        59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~---------~~QGvY-~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~  128 (349)
                      -|++++++.+.+.+++..++.+..|++++++..+.         ++.|.| +++.++.+++. .+..++..+..|.+++.
T Consensus       224 ~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~s~~  302 (488)
T TIGR02900       224 LFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDISEA  302 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999876532         233444 35566677774 78889999999999999


Q ss_pred             hcCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHH
Q 018885          129 ASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLH  208 (349)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~  208 (349)
                      .+++|.++   .++.....++....+++.........+++++++++|  |.+  +.+.+++.+...++.+++.+.....+
T Consensus       303 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~~--~~~~l~i~~~~~~~~~~~~~~~~~l~  375 (488)
T TIGR02900       303 MAKKNYSS---IEKRINQAIKISLLLGLITTVILLVIPDELGALFYG--RPD--AGNFIRVLAPSFPFLYFSAPLQSILQ  375 (488)
T ss_pred             HHcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCc--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87665444   556666677777777765555555788899998884  443  47899999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018885          209 AVATEDQLKRSNDSLLVFSVIYIVMNVILI--QSAGSVGLILANSLNMILRIIYSAIFIKHYFQ  270 (349)
Q Consensus       209 a~a~~~~l~~~~~~m~~~s~~fl~~~~~l~--~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~  270 (349)
                      +.++++...+.+....++.++   .+++++  +.+|..|..+|..+.+.++.+.+..+.+|.++
T Consensus       376 ~~g~~~~~~~~~~~~~i~~i~---l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~~~  436 (488)
T TIGR02900       376 GLGKQKVALRNSLIGAIVKII---LLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKNIR  436 (488)
T ss_pred             hcCcchHHHHHHHHHHHHHHH---HHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999888777666555544   455566  67899999999999999999999999988764

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PRK15099 O-antigen translocase; Provisional

Probab=99.21  E-value=5e-09  Score=104.35  Aligned_cols=202  Identities=13%  Similarity=0.020  Sum_probs=153.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885           59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  138 (349)
Q Consensus        59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~  138 (349)
                      -|+++++..+...+++.-.+.+-.|+.+++...+.++.|.|++++++.+.+...+..|+.++.+|..++.   +++++  
T Consensus       214 ~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~--  288 (416)
T PRK15099        214 AGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRD--  288 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHH--
Confidence            3789999999999999999999999999998888899999999999999999999999999999999995   22222  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHH
Q 018885          139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR  218 (349)
Q Consensus       139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~  218 (349)
                       .++.....++....+++.....-...++.++++++|++|.+.  .+++++.+....+...+........+.+.++....
T Consensus       289 -~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~~--~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~  365 (416)
T PRK15099        289 -ITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTAM--RDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYIL  365 (416)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             334444455555555544433333788999999999999886  77899988888877777766544443332211111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018885          219 SNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG  271 (349)
Q Consensus       219 ~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~  271 (349)
                      .   -...-+..+..++++++.+|..|..+|-.+.-.+..+.+.....+++++
T Consensus       366 ~---~~~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~~~~~~  415 (416)
T PRK15099        366 A---EVSQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFLLYRRR  415 (416)
T ss_pred             H---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1   1122234556677889999999999999999999999999888877765

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.04  E-value=2.2e-07  Score=94.79  Aligned_cols=205  Identities=19%  Similarity=0.250  Sum_probs=170.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhh
Q 018885           60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK  139 (349)
Q Consensus        60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~  139 (349)
                      |++.+.......-+...|+.+-=|+.+-+.+. ...-..+.-++.+-.++--.+..|+....+|.+||..+++|.++   
T Consensus       198 ~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~-~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~---  273 (451)
T PF03023_consen  198 KRFLKLAIPLLLSSSISQINILVDRALASFLG-EGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE---  273 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---
Confidence            57888888888888999999999998888754 55677888899999999999999999999999999998776443   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCC-CCCCCc---hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHH
Q 018885          140 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQ  215 (349)
Q Consensus       140 ~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~-kW~~~~---~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~  215 (349)
                      .++.+...+|....+.+-+..+....+++++++++++ +....+   ..+++++|+..+|+.++|.++--.+.|..+++.
T Consensus       274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~  353 (451)
T PF03023_consen  274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT  353 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence            6667777888888888777777779999999999954 444332   255899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018885          216 LKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG  271 (349)
Q Consensus       216 l~~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~  271 (349)
                      -.+.+....+..++.-   +++.+.+|..|+.+|+.+....-....+...+|..+.
T Consensus       354 ~~~~~~~~~~lni~l~---~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~~~~  406 (451)
T PF03023_consen  354 PVRISVISVVLNIILS---ILLVPFFGVAGLALATSLSAIISALLLYILLRRRLGL  406 (451)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8887777666555554   5588999999999999999988888888888877663

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK01766 multidrug efflux protein; Reviewed

Probab=98.55  E-value=7e-06  Score=82.82  Aligned_cols=201  Identities=12%  Similarity=0.082  Sum_probs=145.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885           59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  138 (349)
Q Consensus        59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~  138 (349)
                      -|++++++.....+++...+..--|.++++++. .++.+.+++++++-. +.-.++.-+..+.-+.-|+...+++.++  
T Consensus        11 ~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g-~~~laa~~~~~~~~~-~~~~~~~g~~~a~~~~vs~~~g~~~~~~--   86 (456)
T PRK01766         11 ARQLLALALPILLAQVAQTAMGFVDTVMAGGVS-ATDLAAVAIGTSIWL-PVILFGHGLLLALTPIVAQLNGAGRRER--   86 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChHH--
Confidence            468899999999999999999999999999975 457788888877633 2334455567777777888776655433  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHH
Q 018885          139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR  218 (349)
Q Consensus       139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~  218 (349)
                       .++.+..-++....+++...+.....++++++++..+.=..+.+.+.++++++..|+.+++.+...++++.++++.-..
T Consensus        87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  165 (456)
T PRK01766         87 -IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV  165 (456)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence             6666666788888888766666667778888865433111112455789999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH------hhChHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885          219 SNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIFIKH  267 (349)
Q Consensus       219 ~~~~m~~~s~~fl~~~~~l~~------~~G~~GlI~AN~~nM~lRi~~s~~fI~~  267 (349)
                      .+....+..+   ...++++.      .+|..|..+|..+...+..+....++++
T Consensus       166 ~~~i~~ivni---~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~  217 (456)
T PRK01766        166 IGFLGLLINI---PLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKR  217 (456)
T ss_pred             HHHHHHHHHH---HHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            7766554444   34555652      3688888888777776666666555543

>TIGR00797 matE putative efflux protein, MATE family

Probab=98.50  E-value=1.4e-05  Score=76.60  Aligned_cols=190  Identities=22%  Similarity=0.235  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHHHHHHHHH
Q 018885           70 TFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALK  149 (349)
Q Consensus        70 ~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~~Lk  149 (349)
                      +.+++..++..--|+++++.+. .++.|.|++++.+ ..+.+.+...+-.+..+..+|...++++++   .++.....++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~a~~i-~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~---~~~~~~~~~~   77 (342)
T TIGR00797         3 ILANILQPLLGLVDTAFVGHLG-PVDLAAVSLGSSV-FMFLFSILMGLGTATTALVAQAVGAGNYQR---LGRQAQQSLL   77 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHhHHH-HHHHHHHHHHHHHhHHHHHHHHHCCCChHH---HHHHHHHHHH
Confidence            4567788888889999999976 6778999999776 447778888999999999999887665444   5566666788


Q ss_pred             HHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 018885          150 LVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVI  229 (349)
Q Consensus       150 ~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~  229 (349)
                      ....+++++..+....++++.+++..++=....+.+.+++++..+|+.+++.+..+..++..+.+.....+...   .+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~---~~~  154 (342)
T TIGR00797        78 LALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG---NVI  154 (342)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH---HHH
Confidence            88888877777777778888875532211112245679999999999999999999999988887766555433   344


Q ss_pred             HHHHHHHHHH-hh---ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885          230 YIVMNVILIQ-SA---GSVGLILANSLNMILRIIYSAIFIKH  267 (349)
Q Consensus       230 fl~~~~~l~~-~~---G~~GlI~AN~~nM~lRi~~s~~fI~~  267 (349)
                      .+..++++.. .+   |..|..+|..+.-....+....++++
T Consensus       155 ~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~  196 (342)
T TIGR00797       155 NIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK  196 (342)
T ss_pred             HHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555565665 44   49999999998888888877777665

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=98.38  E-value=5.5e-05  Score=76.91  Aligned_cols=202  Identities=17%  Similarity=0.149  Sum_probs=151.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885           59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  138 (349)
Q Consensus        59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~  138 (349)
                      .|++++++.....+++...+.+==|.++++++.+.++.+.+++++++-+++.-. +.=+--..-+.-||....+|.++  
T Consensus         8 ~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~-~~~~~~g~~~lvsq~~Ga~~~~~--   84 (441)
T PRK10367          8 DKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFML-LLFLRMSTTGLTAQAFGAKNPQA--   84 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCHHH--
Confidence            578999999999999999999999999999987777788888887776554322 22344555556666665555433  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHH
Q 018885          139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR  218 (349)
Q Consensus       139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~  218 (349)
                       +++.....+.+...++++...++.+..+++++++..+.=....+.+-++++++..|+..++-+..+++++.++++.-..
T Consensus        85 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  163 (441)
T PRK10367         85 -LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI  163 (441)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence             6666666777888888888788888888988866433212223456889999999999999999999999999987655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--hhChHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885          219 SNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIKH  267 (349)
Q Consensus       219 ~~~~m~~~s~~fl~~~~~l~~--~~G~~GlI~AN~~nM~lRi~~s~~fI~~  267 (349)
                      .+..   ..++-+..+|+++.  .+|..|..+|..+...+..+....++.|
T Consensus       164 ~~ii---~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~  211 (441)
T PRK10367        164 LLVV---GNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK  211 (441)
T ss_pred             HHHH---HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443   34556667777776  3799999999998888877776666654

>PRK01766 multidrug efflux protein; Reviewed

Probab=98.36  E-value=5e-05  Score=76.66  Aligned_cols=199  Identities=15%  Similarity=0.093  Sum_probs=144.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885           59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  138 (349)
Q Consensus        59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~  138 (349)
                      -|++++++.....+.+...+...-+..+++++. .++.+.|++++|+.++.. .+..-+-.+.-+.-++....+|.++  
T Consensus       238 ~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G-~~~lAa~~i~~~i~~~~~-~~~~gl~~a~~~~v~~~~Ga~~~~~--  313 (456)
T PRK01766        238 IKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLG-TVTVAAHQIALNFSSLLF-MLPLSLAMALTIRVGFELGAGRTLD--  313 (456)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHHH--
Confidence            378889999999998888888888888888875 467999999999877653 3344455555556666666665443  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCc----hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHH
Q 018885          139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE----ASTALRYYCLYVVVLAMNGTSEAFLHAVATED  214 (349)
Q Consensus       139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~----~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~  214 (349)
                       +++.....++....++++........++++.+++ ++   |++    +.+.++++++..|+.+++-+..+++++.++++
T Consensus       314 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf-~~---d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~  388 (456)
T PRK01766        314 -ARQYAYIGLAVGLGMALLTAIFLVLFREQIALLY-TD---DPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTR  388 (456)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccH
Confidence             6666666777777777665555556677777754 32   443    34578888999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHH--hhChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018885          215 QLKRSNDSLL-VFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIKHYF  269 (349)
Q Consensus       215 ~l~~~~~~m~-~~s~~fl~~~~~l~~--~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f  269 (349)
                      .-...+.... ++.++   ..|++..  .+|..|.-+|..+....+.+...+.+++.-
T Consensus       389 ~~~~~~~~~~~~~~i~---~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~  443 (456)
T PRK01766        389 VIFFITFIAYWVLGLP---LGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQ  443 (456)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888776543 33443   3343443  479999999999999999987777766653

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=98.31  E-value=8.4e-05  Score=75.50  Aligned_cols=202  Identities=11%  Similarity=-0.003  Sum_probs=150.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhh
Q 018885           58 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  137 (349)
Q Consensus        58 ~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~  137 (349)
                      .-|++++++.....+++...+.+=-|.++++++.+.++.+.|++++.+=.+.. -+..=+..++=+.-+|....++.++ 
T Consensus        10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~-~~~~~~~~g~~~lvsq~~Ga~~~~~-   87 (453)
T PRK09575         10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIIL-GIGLMVGMGTGSLLSIKRGEGDLEK-   87 (453)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHhcCCCHHH-
Confidence            56889999999999999999999999999999866778888877766544322 1222344445567777776655433 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHH
Q 018885          138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK  217 (349)
Q Consensus       138 ~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~  217 (349)
                        .++.....++....+++++.......++++++++.++.=....+.+.++++.+..|+.+++-....++++.++++...
T Consensus        88 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~  165 (453)
T PRK09575         88 --AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT  165 (453)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence              667777788888888877777777888899986643321112345689999999999999999999999999887666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHHHHHHHHH
Q 018885          218 RSNDSLLVFSVIYIVMNVILIQS--AGSVGLILANSLNMILRIIYSAIFIK  266 (349)
Q Consensus       218 ~~~~~m~~~s~~fl~~~~~l~~~--~G~~GlI~AN~~nM~lRi~~s~~fI~  266 (349)
                      ..+...   .++-+..+|+++..  +|..|..+|..+...+..+....++.
T Consensus       166 ~~~~~~---~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~  213 (453)
T PRK09575        166 GLMVIG---ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFF  213 (453)
T ss_pred             HHHHHH---HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554433   34555667777763  79999999999999999888777764

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=98.29  E-value=0.00017  Score=72.76  Aligned_cols=194  Identities=13%  Similarity=0.142  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHHHHH
Q 018885           66 CTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLA  145 (349)
Q Consensus        66 ~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~  145 (349)
                      +.|.+..+++..+..=-|+.++++..++++.|.|+++..+-++..-+...-+..+.-...||...++|++   +.++.+.
T Consensus         5 ~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~---~~~~~~~   81 (488)
T TIGR02900         5 TFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRK---NIKKILK   81 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchh---hHHHHHH
Confidence            4678888899999999999999999999999999999887776666555566666666666655444433   3555555


Q ss_pred             HHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 018885          146 EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLV  225 (349)
Q Consensus       146 ~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~  225 (349)
                      ....+...+++++...-...++.+.+.+.++    ++....+++++..+|+.+++++.+++.++..+.+.....+....+
T Consensus        82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i  157 (488)
T TIGR02900        82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKD----ERSLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI  157 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence            5555555555544433334445555544332    233457889999999999999999999999999887777665555


Q ss_pred             HHHHHHHH-HHHHHH---hhChHHHHHHHHHHHHHHHHHHHHHHH
Q 018885          226 FSVIYIVM-NVILIQ---SAGSVGLILANSLNMILRIIYSAIFIK  266 (349)
Q Consensus       226 ~s~~fl~~-~~~l~~---~~G~~GlI~AN~~nM~lRi~~s~~fI~  266 (349)
                      .++..... .+.+..   ..|..|..+|+.+...+-.++...+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~  202 (488)
T TIGR02900       158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFK  202 (488)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54433222 111211   246667777777666665555554443

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=98.18  E-value=0.00065  Score=69.03  Aligned_cols=204  Identities=14%  Similarity=0.101  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhh
Q 018885           60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK  139 (349)
Q Consensus        60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~  139 (349)
                      |+.+++....+.|...-.+-.---..+++.+.+.++.+.|++++|.-++ .-....-+-.+.-+.=++....++.++   
T Consensus       234 ~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvg~~~Ga~~~~~---  309 (453)
T PRK09575        234 PKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVL-YYLVAEGIAEGMQPPVSYYFGARQYDN---  309 (453)
T ss_pred             HHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCChHH---
Confidence            4555666555555443222222222233444444578999999887766 444566677777777888877666544   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCC-CCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHH
Q 018885          140 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK-WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR  218 (349)
Q Consensus       140 ~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~k-W~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~  218 (349)
                      +++....-+++....+.+....-...+++++++.-.++ =.-..+.+.+++.+++.|+.+++-+..+++++.++++....
T Consensus       310 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  389 (453)
T PRK09575        310 IKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALF  389 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            66666667777777777666666667778888554221 00012355789999999999999999999999999998776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018885          219 SNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQ  270 (349)
Q Consensus       219 ~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~  270 (349)
                      .+..+.++   .+...|++...+|..|.-+|..+...++.+......++..+
T Consensus       390 ~~~~~~~v---~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~~~  438 (453)
T PRK09575        390 ISIGNMLI---QLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLWRDVK  438 (453)
T ss_pred             HHHHhHHH---HHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66544433   34445666666899999999999999998888776666554

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=98.14  E-value=0.00089  Score=68.40  Aligned_cols=196  Identities=10%  Similarity=-0.005  Sum_probs=142.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885           59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  138 (349)
Q Consensus        59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~  138 (349)
                      -|+++++......|++.....+.-|..+++++.+ ++.+.+++++|+-++ .-....=+-.+.-+.=+|....+++++  
T Consensus       235 ~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~-~alAa~~i~~~i~~l-~~~~~~gi~~a~~~lvgq~~Ga~~~~~--  310 (464)
T PRK00187        235 LRELWRLGLPIGGTYAVEVGLFTFAALCMGALGS-TQLAAHQIALQIVSV-AFMVPVGLSYAVTMRVGQHYGAGRLLE--  310 (464)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHH--
Confidence            3789999999999999999999999999999776 799999999998875 344444566667777777776665444  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCC-CCCCCc----hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCH
Q 018885          139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE----ASTALRYYCLYVVVLAMNGTSEAFLHAVATE  213 (349)
Q Consensus       139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~-kW~~~~----~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~  213 (349)
                       +++.....++....++++...+....++.+++++-++ +-...+    +.+.++.+|+..|+.++|.+..+.+.+.+++
T Consensus       311 -~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~  389 (464)
T PRK00187        311 -ARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDA  389 (464)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCcc
Confidence             5565555777777777766666667788888877543 221112    2447888999999999999999999999999


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHHHHH
Q 018885          214 DQLKRSNDSLL-VFSVIYIVMNVILIQS--AGSVGLILANSLNMILRIIYSA  262 (349)
Q Consensus       214 ~~l~~~~~~m~-~~s~~fl~~~~~l~~~--~G~~GlI~AN~~nM~lRi~~s~  262 (349)
                      +--...+.... ++.++   .+|++...  +|..|.-+|-.+-..++.+...
T Consensus       390 ~~~~~~~~~~~~~~~ip---l~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~  438 (464)
T PRK00187        390 RTTFLIGLACYWLVGAP---LAWLLAFTLGWGAVGVWWGLALGLACAAVALT  438 (464)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHhccCCCceeeHHHHHHHHHHHHHHHH
Confidence            88777665433 33333   33334433  6888888877776666654443

>TIGR01695 mviN integral membrane protein MviN

Probab=98.13  E-value=0.00042  Score=70.24  Aligned_cols=198  Identities=11%  Similarity=0.123  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccc-hhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhH
Q 018885           62 LANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQ-AVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI  140 (349)
Q Consensus        62 ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~Q-GvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~  140 (349)
                      +.+=+...+..++++.+..=-|+.++++..++++. |.|.++.++=.++.-.+.   +-..-....+...+.++++ ++.
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~---~~g~~~a~i~~~~~~~~~~-~~~   77 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFA---EGAFNSAFVPVFTKAKKKE-KEA   77 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHhhh-hHH
Confidence            34556677888899999999999999998888888 999999876544433322   1112222333222211111 234


Q ss_pred             HHHHHHHHHHHHHHHH-HHHhhcccchHHHHHHHcCCCCCCC---chHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHH
Q 018885          141 GNSLAEALKLVLLIGL-VFMAFGPSYSYSLVRLLYGKKWSDG---EASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQL  216 (349)
Q Consensus       141 ~~~l~~~Lk~~~~igl-i~~~fG~~~s~~lL~ll~G~kW~~~---~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l  216 (349)
                      ++.+..-......++. +....+...++.+.+++ ++...++   .+.+.+++.+..+|+.+++++.+++.++..+.+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~  156 (502)
T TIGR01695        78 RRAFANTVTTLLILSLLLVVLIGIFFAPFVISLL-APGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIP  156 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHH
Confidence            4444333333333333 33444667777887754 3333333   25678999999999999999999999999988877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhChHHHH--HHHHHHHHHHHHHHHHHHHH
Q 018885          217 KRSNDSLLVFSVIYIVMNVILIQSAGSVGLI--LANSLNMILRIIYSAIFIKH  267 (349)
Q Consensus       217 ~~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI--~AN~~nM~lRi~~s~~fI~~  267 (349)
                      ...+...-   +..+...+++...+|..|+.  +|.++...+..++.+.+.+|
T Consensus       157 ~~~~i~~~---i~~i~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~  206 (502)
T TIGR01695       157 SFSPILFN---IGVILSLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK  206 (502)
T ss_pred             HHHHHHHH---HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66655433   33333333355568999988  99999988888887766654

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK10189 MATE family multidrug exporter; Provisional

Probab=98.04  E-value=0.00077  Score=69.34  Aligned_cols=198  Identities=15%  Similarity=0.205  Sum_probs=148.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhh
Q 018885           58 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  137 (349)
Q Consensus        58 ~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~  137 (349)
                      +-|++++++.....|++...+..=-|.++++.+. .++.+.+++++++-.+ .-.++.-+-.+.-+.-+|....++.++ 
T Consensus        27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG-~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~~~-  103 (478)
T PRK10189         27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG-KEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDRRR-  103 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHH-
Confidence            4688999999999999999999999999999865 4778889998888543 334444466677777777776665444 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCc----hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCH
Q 018885          138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE----ASTALRYYCLYVVVLAMNGTSEAFLHAVATE  213 (349)
Q Consensus       138 ~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~----~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~  213 (349)
                        +++.....+.....++++...++...++++++++.|.  .|++    +.+.+++.++..|+.+++-+..+++++.+++
T Consensus       104 --~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~--~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~  179 (478)
T PRK10189        104 --ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGD--ATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNT  179 (478)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence              6666666777777777777777778888999877532  2333    3457888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH------hhChHHHHHHHHHHHHHHHHHHHHHH
Q 018885          214 DQLKRSNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIFI  265 (349)
Q Consensus       214 ~~l~~~~~~m~~~s~~fl~~~~~l~~------~~G~~GlI~AN~~nM~lRi~~s~~fI  265 (349)
                      +.-...+....   ++-+...|+++.      .+|..|..+|..+.-.+..+....+.
T Consensus       180 ~~~~~i~~~~~---~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~  234 (478)
T PRK10189        180 KIPLLINGGMN---ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVL  234 (478)
T ss_pred             HHhHHHHHHHH---HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            87776665433   333445555653      36999999999888777776665544

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=98.00  E-value=0.00071  Score=69.09  Aligned_cols=194  Identities=17%  Similarity=0.085  Sum_probs=140.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885           59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  138 (349)
Q Consensus        59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~  138 (349)
                      -|+++++......|++...+..--|.++++++. .++.+.+++++.+=++.. .+..-+-.+.-+.-||....++.++  
T Consensus         9 ~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg-~~alAa~~i~~~i~~~~~-~~~~gl~~~~~~i~aq~~Ga~~~~~--   84 (464)
T PRK00187          9 LKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG-PEALAGGGLGAASYSFVS-IFCVGVIAAVGTLVAIRHGAGDIEG--   84 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChhh--
Confidence            367899999999999999999999999999974 568999999988866543 4456677777788888887665444  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCc----hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHH
Q 018885          139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE----ASTALRYYCLYVVVLAMNGTSEAFLHAVATED  214 (349)
Q Consensus       139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~----~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~  214 (349)
                       +++.+..-+.+...++++...... ..+++++++ |.   +++    +.+-++++++..|+.+++.+..+++++.++++
T Consensus        85 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~-~~---~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~  158 (464)
T PRK00187         85 -ATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLF-GQ---APQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAG  158 (464)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHc-CC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence             666666666766666666555443 457888855 43   333    34478888889999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------hhChHHHHHHHHHHHHHHHHHHHHHH
Q 018885          215 QLKRSNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIFI  265 (349)
Q Consensus       215 ~l~~~~~~m~~~s~~fl~~~~~l~~------~~G~~GlI~AN~~nM~lRi~~s~~fI  265 (349)
                      -....+....+.   -+..+|+++.      .+|..|..+|-.+.-.+-.+....++
T Consensus       159 ~~~~~~~~~~~~---ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~  212 (464)
T PRK00187        159 PVMVISLAGAVA---NLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYI  212 (464)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence            776666555444   4455666664      26889998887765444333333333

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=97.82  E-value=0.0026  Score=65.20  Aligned_cols=203  Identities=20%  Similarity=0.209  Sum_probs=153.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhh
Q 018885           58 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  137 (349)
Q Consensus        58 ~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~  137 (349)
                      ..|++++++.....+++...+.+==|.+++|++. .++.+.=++++.+=.++- .++.=+--++-...||....+|.   
T Consensus        15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~-~~alaav~la~~i~~~~~-~~~~gl~~g~~~liaq~~Ga~~~---   89 (455)
T COG0534          15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG-AEALAAVGLANPIFFLII-AIFIGLGTGTTVLVAQAIGAGDR---   89 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHcCCch---
Confidence            5689999999999999999999999999999998 444444444433322211 11222334444556666554443   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHH
Q 018885          138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK  217 (349)
Q Consensus       138 ~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~  217 (349)
                      ++.+++...-+-+...+|++....+-..++++++++.+++=..+.+.+-+++.++-.|++.++-+.+++..+.++++.-.
T Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m  169 (455)
T COG0534          90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM  169 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence            44777777788888888888888888999999998886432445567789999999999999999999999999998766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----hChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885          218 RSNDSLLVFSVIYIVMNVILIQS----AGSVGLILANSLNMILRIIYSAIFIKHY  268 (349)
Q Consensus       218 ~~~~~m~~~s~~fl~~~~~l~~~----~G~~GlI~AN~~nM~lRi~~s~~fI~~~  268 (349)
                      .-   +++..+.-++..|+++..    +|..|..+|.++...+-.+....++.+.
T Consensus       170 ~~---~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~  221 (455)
T COG0534         170 YI---LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRK  221 (455)
T ss_pred             HH---HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            54   445555666777778776    8999999999999999888888887654

>PRK15099 O-antigen translocase; Provisional

Probab=97.75  E-value=0.0039  Score=62.16  Aligned_cols=193  Identities=12%  Similarity=0.014  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHH
Q 018885           63 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGN  142 (349)
Q Consensus        63 l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~  142 (349)
                      .+=+.|.....+++.+.+=.-.-+++++-++++.|.++.+.++-++..=..-.-+.++.-...+|.  ++|   .++.++
T Consensus         4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~---~~~~~~   78 (416)
T PRK15099          4 AKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQ---PQQLRA   78 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCC---HHHHHH
Confidence            344556666777777777777778999999999999998888777666554444555444444443  222   233556


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHH
Q 018885          143 SLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDS  222 (349)
Q Consensus       143 ~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~  222 (349)
                      .....+.....++++....+...++++...++|+.    +..+++.+-++..++.+++.+.++...+..+.+.-...+..
T Consensus        79 ~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~  154 (416)
T PRK15099         79 VVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHT----DYQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIV  154 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66667777777777766667777777777665442    34566777776666778888888888876544443333333


Q ss_pred             HHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885          223 LLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKH  267 (349)
Q Consensus       223 m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~  267 (349)
                      ..+..+..   ..+.....|..|..+|..+.-.+-.++...++.|
T Consensus       155 ~~~~~i~l---~i~~~~~~Gv~Ga~iat~i~~~i~~~~~~~~~~~  196 (416)
T PRK15099        155 GSLIGVAA---YYLCYRLGGYEGALLGLALVPALVVLPAGIMLIR  196 (416)
T ss_pred             HHHHHHHH---HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333222   1112233499999999999877766666666644

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=97.61  E-value=0.0075  Score=54.71  Aligned_cols=167  Identities=16%  Similarity=0.215  Sum_probs=104.1

Q ss_pred             hhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 018885           85 LVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPS  164 (349)
Q Consensus        85 ~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~~Lk~~~~igli~~~fG~~  164 (349)
                      .++++..+++|-|.|+++....++..-..-..++.+.-.     ..++++   ++.++.....+.....++++..++.+.
T Consensus         9 ~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T PF13440_consen    9 ILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDK---QDIRSLLRFSLLVSLLLAVILAILAIL   80 (251)
T ss_pred             HHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888999999999999999999988876777666433     111221   223333333333333333333333333


Q ss_pred             chHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH
Q 018885          165 YSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSV  244 (349)
Q Consensus       165 ~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~fl~~~~~l~~~~G~~  244 (349)
                      .+.     ..    .+++....+...+.++++.+++-+..+...+..+.+.....+....+......+..+.+  ..+..
T Consensus        81 ~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  149 (251)
T PF13440_consen   81 IAY-----FF----GDPELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL--GLNLW  149 (251)
T ss_pred             HHH-----Hh----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHH
Confidence            332     11    23333456777888889999999999888888877776665555555442222221111  23778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018885          245 GLILANSLNMILRIIYSAIFIKHYFQ  270 (349)
Q Consensus       245 GlI~AN~~nM~lRi~~s~~fI~~~f~  270 (349)
                      +.+++.++...+..++.+.+.++..+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (251)
T PF13440_consen  150 SILLAFIISALLALLISFYLLRRKLR  175 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccC
Confidence            89999999888888888876654433

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.58  E-value=0.037  Score=50.40  Aligned_cols=186  Identities=14%  Similarity=0.206  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHHHHHH
Q 018885           67 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAE  146 (349)
Q Consensus        67 ~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~  146 (349)
                      .+.+...++..+..=.-..++++..+++|-|.|+++.++.++..=+.-..+..+.--..++..+++     ++.+.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~~-----~~~~~~~~~   80 (273)
T PF01943_consen    6 LWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDKK-----ELRSAYFSS   80 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhH-----HHHHHHHHH
Confidence            344555566666666667888999999999999999999988776666677776655555544321     112222222


Q ss_pred             HHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHH-HHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 018885          147 ALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYV-VVLAMNGTSEAFLHAVATEDQLKRSNDSLLV  225 (349)
Q Consensus       147 ~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi-~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~  225 (349)
                      .+......+++. .+.+....    ..     .+++....+.++.... ++..++...+.+.++.   ++.+......+.
T Consensus        81 ~~~~~~~~~~i~-~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  147 (273)
T PF01943_consen   81 VLFLLLIFSLIF-LLILLIAS----FF-----GNPSLSLILIILALLILILSSLSSVFSGLLQGL---QRFKYIAISNII  147 (273)
T ss_pred             HHHHHHHHHHHH-HHHHHHHH----Hc-----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            222222222222 22221111    11     2222223333443333 4778888888888777   344445555555


Q ss_pred             HHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018885          226 FSVIYIVMNVILIQSA-GSVGLILANSLNMILRIIYSAIFIKHYFQ  270 (349)
Q Consensus       226 ~s~~fl~~~~~l~~~~-G~~GlI~AN~~nM~lRi~~s~~fI~~~f~  270 (349)
                      ..+...+...++.... +..+++++..+........+..+.+|.++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
T PF01943_consen  148 SSLLSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRRKLR  193 (273)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5566555555455543 47899999999999999999999988774

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=97.55  E-value=0.0062  Score=51.50  Aligned_cols=83  Identities=17%  Similarity=0.235  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHH
Q 018885          186 ALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFI  265 (349)
Q Consensus       186 ~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI  265 (349)
                      ++|+.|...++..++...-...++.+++++..+.+....+..++.   ++.+++.+|..|..+|..+............+
T Consensus         1 il~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~---~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~   77 (146)
T PF14667_consen    1 ILQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIIL---NYILIPRFGIYGAAIATAISEIVSFILNLWYV   77 (146)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999998886665555554   45589999999999999999999999999999


Q ss_pred             HHHhhc
Q 018885          266 KHYFQG  271 (349)
Q Consensus       266 ~~~f~~  271 (349)
                      +|.++-
T Consensus        78 ~k~~~~   83 (146)
T PF14667_consen   78 RKKIGI   83 (146)
T ss_pred             HHHhCC
Confidence            999865

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.47  E-value=0.00085  Score=61.24  Aligned_cols=71  Identities=13%  Similarity=0.275  Sum_probs=63.7

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhh
Q 018885           57 SYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS  128 (349)
Q Consensus        57 ~~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~  128 (349)
                      ...|++++.+.+++..++...+.++.|+++++.+.++++.|.|+++.++++.+. .+..++-...+|.+||+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~-~~~~~~~~~~~P~~s~l  272 (273)
T PF01943_consen  202 KFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAIS-FLLSSISTVLFPRLSRL  272 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence            456899999999999999999999999999999999999999999999999655 45666666999999985

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=97.36  E-value=0.27  Score=51.71  Aligned_cols=205  Identities=18%  Similarity=0.163  Sum_probs=148.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhh
Q 018885           60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK  139 (349)
Q Consensus        60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~  139 (349)
                      |++.....-...-.-..|++.--|..+=+.+. ...+-.+.-++-+=.+|-=++---+--...|.+||...++|.++   
T Consensus       232 k~~~~~~~p~~l~~sisQi~lli~~~iAS~l~-~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~---  307 (518)
T COG0728         232 KRFLKLMLPALLGVSISQINLLIDTAIASFLA-EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPE---  307 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHH---
Confidence            45666666677777788888887777655553 33344555556666666666666677888899999998776443   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCC-CCCCCc---hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHH
Q 018885          140 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQ  215 (349)
Q Consensus       140 ~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~-kW~~~~---~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~  215 (349)
                      ..+.+..-+|...++++-...+....|++++++++.. +..+.+   ..++|..|..=+|+.+++.+.-..+.|..+++.
T Consensus       308 ~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~kt  387 (518)
T COG0728         308 FLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKT  387 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCc
Confidence            5666677888888888877777779999999999986 454433   246999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018885          216 LKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG  271 (349)
Q Consensus       216 l~~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~  271 (349)
                      =.+.+..-++..+.   .++.+...+|..|+.+|-.++-..-...-++..+|....
T Consensus       388 P~~i~ii~~~~n~~---l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~  440 (518)
T COG0728         388 PMKIAIISLVVNIL---LNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVY  440 (518)
T ss_pred             ChHHHHHHHHHHHH---HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            87777655555444   445577778989988877776544444455555544443

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=97.32  E-value=0.051  Score=55.75  Aligned_cols=205  Identities=16%  Similarity=0.100  Sum_probs=135.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885           59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  138 (349)
Q Consensus        59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~  138 (349)
                      -|+++++......+++.-..-..-=..+++++. .+.-..|+++.+.-++.- ....=+..+.-+.-.+....++.++  
T Consensus       240 ~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G-~~~lAa~~i~~~i~~~~~-~~~~gi~~a~~~lvG~~~Ga~~~~~--  315 (455)
T COG0534         240 LKEILRLGLPIFLESLSESLGFLLLTLFVARLG-TVALAAYGIALRIASFIF-MPPFGIAQAVTILVGQNLGAGNYKR--  315 (455)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCHHH--
Confidence            467777777777777665555555555555555 566677888777766543 2233355666666667666665444  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHH
Q 018885          139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR  218 (349)
Q Consensus       139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~  218 (349)
                       +++.....++....++++....=...++++.++...+.=....+...+.+.+.+.|+.++|-+....+++.++++.-.-
T Consensus       316 -a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~  394 (455)
T COG0534         316 -ARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFI  394 (455)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence             5555555666666666555444445566777755544001112345789999999999999999999999999987655


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018885          219 SNDS-LLVFSVIYIVMNVILIQS-AGSVGLILANSLNMILRIIYSAIFIKHYFQG  271 (349)
Q Consensus       219 ~~~~-m~~~s~~fl~~~~~l~~~-~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~  271 (349)
                      .+.. +..+.   +...|++... +|..|+-++-.+...+|.+....+.++.-.+
T Consensus       395 ~~~~~~~~~~---lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~  446 (455)
T COG0534         395 ISLLSYWGFR---LPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRRGRWR  446 (455)
T ss_pred             HHHHHHHHHH---HhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            5433 22222   3444446566 9999999999999999999998887776544

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=97.19  E-value=0.00023  Score=60.97  Aligned_cols=155  Identities=13%  Similarity=0.119  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHHHHHHHHH
Q 018885           70 TFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALK  149 (349)
Q Consensus        70 ~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~~Lk  149 (349)
                      ..+++...+...-|..+++++ +.++.+.|+++.++.++..= +...+.++.-+.-++...++|.++   +++.....++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~~~~~~~~-~~~g~~~a~~~~~s~~~G~~~~~~---~~~~~~~~~~   77 (162)
T PF01554_consen    3 ALMQLLQVLGFIIDTIFVGRL-GPEALAAYGIASSIFSILFM-LIFGLATALQILISQNIGAGDYKR---AKKVVRQGLL   77 (162)
T ss_dssp             HHHHHHHHHHHHHHHHCCHCC-TTCCCCHCCHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCSSSTTT---CCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhh-hcccccccccceeecccccccccc---cccccccccc
Confidence            467788888899999999999 99999999999999877554 777788888888888776665444   5556666788


Q ss_pred             HHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHH-HHHH
Q 018885          150 LVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLL-VFSV  228 (349)
Q Consensus       150 ~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~-~~s~  228 (349)
                      ....++++...+....++.+++++..++=....+.+.++..+...|+.+++-+..+++++.++++.....+.... ++.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i  157 (162)
T PF01554_consen   78 LSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINI  157 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHH
T ss_pred             cchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence            888888888777777777777754333222234566888888999999999999999999998887666665544 4444


Q ss_pred             H
Q 018885          229 I  229 (349)
Q Consensus       229 ~  229 (349)
                      +
T Consensus       158 ~  158 (162)
T PF01554_consen  158 P  158 (162)
T ss_dssp             H
T ss_pred             h
Confidence            3

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR00797 matE putative efflux protein, MATE family

Probab=97.16  E-value=0.02  Score=54.84  Aligned_cols=110  Identities=21%  Similarity=0.184  Sum_probs=84.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885           59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  138 (349)
Q Consensus        59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~  138 (349)
                      -|+++++..+...+++...+.+.-|+.+++.+ +.++.|.|+++.++.+++ -.+...+..+..+..++...+++.++  
T Consensus       215 ~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~-g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~--  290 (342)
T TIGR00797       215 LKRLLKLGLPIAFRVILESLSFALLALLVARL-GSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAGDPKR--  290 (342)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH--
Confidence            47899999999999999999999999888775 578899999999998764 57777888999999999876555333  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q 018885          139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLL  173 (349)
Q Consensus       139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll  173 (349)
                       .++.....++....+++.+...-...++++++++
T Consensus       291 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~  324 (342)
T TIGR00797       291 -AKEVARVALKLSLLLGLVLAIILILFREFIARLF  324 (342)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             5566555667666666654444446677777754

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK10189 MATE family multidrug exporter; Provisional

Probab=97.14  E-value=0.18  Score=51.94  Aligned_cols=187  Identities=13%  Similarity=0.018  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc---CCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchh
Q 018885           60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLD---TPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQK  136 (349)
Q Consensus        60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~---t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~  136 (349)
                      ++++++......    ..+..+.-.++++.+.   +.+....|+++.|+-++.- ....-+..+.-+.=++....++.++
T Consensus       259 ~~il~iG~P~~~----~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~-~~~~gi~~A~~~lvg~~~Ga~~~~~  333 (478)
T PRK10189        259 WEVMGIGIPASI----ESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALIN-LPGNALGSASTIITGTRLGKGQIAQ  333 (478)
T ss_pred             HHHHHHhccHHH----HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            455555444433    3444444433333322   2356677888888876532 3334455666666666666665444


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCc----hHHHHHHHHHHHHHHHhhhHHHHHHHHhCC
Q 018885          137 SKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE----ASTALRYYCLYVVVLAMNGTSEAFLHAVAT  212 (349)
Q Consensus       137 ~~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~----~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~  212 (349)
                         +++.....++....++++...+-....+++.++.-.    |++    +...+++.+.+.|+.++|-+....+.+.++
T Consensus       334 ---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~----d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~  406 (478)
T PRK10189        334 ---AERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQ----DPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARD  406 (478)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCC
Confidence               444433355554444443333333445566664422    333    245788999999999999999999999999


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHH--hhChHHHHHHHHHHHHHHHHHH
Q 018885          213 EDQLKRSNDSL-LVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYS  261 (349)
Q Consensus       213 ~~~l~~~~~~m-~~~s~~fl~~~~~l~~--~~G~~GlI~AN~~nM~lRi~~s  261 (349)
                      ++.....+..- .++.++   ..|++..  .+|..|+-++..+...+|.+..
T Consensus       407 t~~~~~i~~~~~~~v~ip---~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~  455 (478)
T PRK10189        407 ARYAMWVSMLGMWGCRVV---AGYILGIMLGFGVVGVWMGMFLDWAVRGVLF  455 (478)
T ss_pred             chHHHHHHHHHHHHHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            88776655332 223333   3333332  3799999999999888887653

>PRK10459 colanic acid exporter; Provisional

Probab=97.13  E-value=0.053  Score=55.15  Aligned_cols=184  Identities=13%  Similarity=0.086  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhh
Q 018885           60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK  139 (349)
Q Consensus        60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~  139 (349)
                      ++..+=..|.+..++...++.=.-..++++.-+++|-|.|+.+..+-++..-+.-..++++.    .|   ++++++ +.
T Consensus         5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~---~~~~~~-~~   76 (492)
T PRK10459          5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQ---RQDISH-LQ   76 (492)
T ss_pred             HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hh---cccCCH-HH
Confidence            34445456677777787777777888999999999999999999988877766666666643    22   222111 22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHH
Q 018885          140 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS  219 (349)
Q Consensus       140 ~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~  219 (349)
                      ...    .......+|++........++++-. .+++    ++...+++..+..+++.+++....+..+...+-+.....
T Consensus        77 ~~~----~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~  147 (492)
T PRK10459         77 LST----LYWLNVGLGIVVFVLVFLLSPLIAD-FYHN----PELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKI  147 (492)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HcCC----hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHH
Confidence            222    3333334444333333333333333 3332    334567777777777777776666666665544444333


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-hhChHHHHHHHHHHHHHHHHHHHH
Q 018885          220 NDSLLVFSVIYIVMNVILIQ-SAGSVGLILANSLNMILRIIYSAI  263 (349)
Q Consensus       220 ~~~m~~~s~~fl~~~~~l~~-~~G~~GlI~AN~~nM~lRi~~s~~  263 (349)
                      +   .+.++.....+..+.. .+|..|+++++.+.-.+..+....
T Consensus       148 ~---~~~~i~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~l~~~~  189 (492)
T PRK10459        148 E---ISAVVAGFTFAVVSAFFWPGALAAILGYLVNSSVRTLLFGY  189 (492)
T ss_pred             H---HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3   3333333333333333 368899999999987777654443

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=97.04  E-value=0.09  Score=53.80  Aligned_cols=172  Identities=15%  Similarity=0.217  Sum_probs=120.8

Q ss_pred             ccCCccchhHHHhhhhhhHHHHHHh-hhhhhhhHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 018885           90 LDTPYNQAVYGLVDKLGSLVVRMVF-LPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYS  168 (349)
Q Consensus        90 ~~t~~~QGvY~lvsN~GSLvaR~lF-~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~  168 (349)
                      +.+.++--.|-++.++-.++.+.+. ..+..+.=|.|+|.. ++++++   .++....++.....+++++...+...++.
T Consensus         5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~---~~~f~~~~~~~~~~~~~~l~~l~~lfa~~   80 (451)
T PF03023_consen    5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEE---ARRFISTLLTILLIISLLLTLLGILFAPP   80 (451)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566689999999999977776 588899999999999 444333   44444556666677777777777788889


Q ss_pred             HHHHHcCCCCCCCc---hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---
Q 018885          169 LVRLLYGKKWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAG---  242 (349)
Q Consensus       169 lL~ll~G~kW~~~~---~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~fl~~~~~l~~~~G---  242 (349)
                      +++++.+. +++..   +.+.+++..+++++.+++++..+..++-.+-..-.   ..-++..+..+...+++.+..|   
T Consensus        81 iv~~la~g-~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~---~~~l~~N~~~I~~~~~~~~~~~~~~  156 (451)
T PF03023_consen   81 IVRLLAPG-FSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPA---LSPLLFNLSIILSLLLLSNSWGQEN  156 (451)
T ss_pred             HHHHHCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHH---HHHHHHHHHHHHHHHHHHHhcCchH
Confidence            99977654 43321   34578999999999999999999998866433222   2233344444444444556678   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018885          243 SVGLILANSLNMILRIIYSAIFIKHYF  269 (349)
Q Consensus       243 ~~GlI~AN~~nM~lRi~~s~~fI~~~f  269 (349)
                      ..++.++..+-..++..+.....+|.-
T Consensus       157 i~~la~g~~~g~~~~~l~~l~~~~~~~  183 (451)
T PF03023_consen  157 IYALAWGVLIGAIIQFLIQLPYLRRFG  183 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            778888888888888877777776653

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=96.83  E-value=0.0067  Score=55.03  Aligned_cols=68  Identities=19%  Similarity=0.337  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhh
Q 018885           61 QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS  128 (349)
Q Consensus        61 ~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~  128 (349)
                      +..+.+.++..+++...+.+++|+++++.+.++++-|.|+++..+..++...+.+++....+|.+||+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~  251 (251)
T PF13440_consen  184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM  251 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999679999999999999999999999999999999998874

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=96.73  E-value=0.43  Score=48.64  Aligned_cols=199  Identities=13%  Similarity=0.085  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhh
Q 018885           60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK  139 (349)
Q Consensus        60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~  139 (349)
                      |++++.......|++...+-..-=..+++++.+ +..+.|++++|+.++.- ....-+..+.-+.=++....++.++   
T Consensus       232 ~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~-~alAa~~I~~~i~~~~~-~~~~gl~~a~~~lvg~~~Ga~~~~~---  306 (441)
T PRK10367        232 RRLLALNRDIMLRSLLLQLCFGAITVLGARLGS-DIIAVNAVLMTLLTFTA-YALDGFAYAVEAHSGQAYGARDGSQ---  306 (441)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHcCCCHHH---
Confidence            566666666666666655555554566666654 57889999998776542 2233355666666777776666555   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCch----HHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHH
Q 018885          140 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEA----STALRYYCLYVVVLAMNGTSEAFLHAVATEDQ  215 (349)
Q Consensus       140 ~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~----~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~  215 (349)
                      +++.....++.....+++....=....++++++.- +   |++.    ...+++.+.+.|.-+++=+..+...+..+..|
T Consensus       307 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt-~---d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~d  382 (441)
T PRK10367        307 LLDVWRAACRQSGIVALLFSLVYALAGEHIIALLT-S---LPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAE  382 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHH
Confidence            44444445555555444433333344556666542 2   3322    33555555542222233344445566665432


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018885          216 LKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG  271 (349)
Q Consensus       216 l~~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~  271 (349)
                       .+...++...+..  . .++....+|..|+-+|-.+...+|.+......++-+++
T Consensus       383 -t~~~~~~~~~~~~--~-~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~~~~  434 (441)
T PRK10367        383 -MRNSMAVAAAGFA--L-TLLTLPWLGNHGLWLALTVFLALRGLSLAAIWRRHWRN  434 (441)
T ss_pred             -HHHHHHHHHHHHH--H-HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             2222222222222  1 22233457999999999999999988876655544554

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=94.77  E-value=2.7  Score=42.48  Aligned_cols=186  Identities=13%  Similarity=0.102  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhH
Q 018885           61 QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI  140 (349)
Q Consensus        61 ~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~  140 (349)
                      +..+=+.|.+...+...++.=.-..++++..+++|-|.|+.+...-++..++...=++.+.--.-++..++++  + ...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~--~-~~~   83 (480)
T COG2244           7 KLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGE--Y-LLL   83 (480)
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccH--H-HHH
Confidence            3444555666666777777777789999999999999999999999998888855555554333333332221  1 111


Q ss_pred             HHH-HHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHH
Q 018885          141 GNS-LAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS  219 (349)
Q Consensus       141 ~~~-l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~  219 (349)
                      ... ....+.....++++......          ....+ +++....++..+.++++........+..++..+-+.....
T Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (480)
T COG2244          84 ILLSVLLLLLLALILLLLLLLIAY----------LLAPI-DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS  152 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------Hhccc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence            111 11122222222222211111          00001 4445678999999999999999999999988766654443


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Q 018885          220 NDSL-LVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSA  262 (349)
Q Consensus       220 ~~~m-~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~  262 (349)
                      ...- .+....+....  .....+..+++.+..+.+.....+-.
T Consensus       153 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (480)
T COG2244         153 IVSSIFLLAAVFALLF--AALGLAVWALVLGAVVSLLVLLILLG  194 (480)
T ss_pred             HHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2221 11112222111  01124666777777777766666554

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=80.05  E-value=87  Score=33.27  Aligned_cols=203  Identities=13%  Similarity=0.115  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc-CCccchhHHHhhhhhhHHHHHHhhhh-hhhhHHHHHhhhcCCCchhh
Q 018885           60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLD-TPYNQAVYGLVDKLGSLVVRMVFLPF-EESSYATFARSASGQYPQKS  137 (349)
Q Consensus        60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~-t~~~QGvY~lvsN~GSLvaR~lF~PI-EEs~~~~Fsk~~~~~~~~~~  137 (349)
                      +.+++-..++..-.++..++==--..+++... +-..--.|.++..+=.+.-|++--.. ..+.=|.|+|..+++.+++.
T Consensus         7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~   86 (518)
T COG0728           7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA   86 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence            44555555555555555544444344555555 44666789999999999888877665 55556778877765533322


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCc---hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHH
Q 018885          138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATED  214 (349)
Q Consensus       138 ~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~---~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~  214 (349)
                      ++.++.   ..-....+.++....|...+|.+++.+.|+.|.+++   +..+.++-.+|+++..+.++.-+..++...  
T Consensus        87 ~~f~~~---v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~--  161 (518)
T COG0728          87 RFFSRL---VTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNR--  161 (518)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCe--
Confidence            222222   222444555555556778888999899999873332   345678888999999988887777666431  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-hC-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885          215 QLKRSNDSLLVFSVIYIVMNVILIQS-AG-SVGLILANSLNMILRIIYSAIFIKHY  268 (349)
Q Consensus       215 ~l~~~~~~m~~~s~~fl~~~~~l~~~-~G-~~GlI~AN~~nM~lRi~~s~~fI~~~  268 (349)
                       -.--+..=+.++++.+..+..+.+. .+ ..++.++-.+-..+-..+-+-..+|.
T Consensus       162 -F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~  216 (518)
T COG0728         162 -FFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKA  216 (518)
T ss_pred             -echhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence             1111222233333333222222222 34 34666667777777777777766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	349
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.45
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	98.62

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.45  E-value=7e-12  Score=122.34  Aligned_cols=207  Identities=12%  Similarity=0.007  Sum_probs=165.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhh
Q 018885           58 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  137 (349)
Q Consensus        58 ~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~  137 (349)
                      .-|++++++.+.+.+++...+.+..|+.+++.+ +.++.|.|++++++.+++. .+...+..+..+..++...++|+++ 
T Consensus       236 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~~~-  312 (460)
T 3mkt_A          236 ELIRLFRLGFPVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTKG-  312 (460)
T ss_dssp             STTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCCT-
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHH-
Confidence            347899999999999999999999999999999 8899999999999998888 8888999999999999987766555 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHH
Q 018885          138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK  217 (349)
Q Consensus       138 ~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~  217 (349)
                        .++.....++....+++.+...-...++++++++.+++..-..+.+.+++++...++.+++.+.....++.++++...
T Consensus       313 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  390 (460)
T 3mkt_A          313 --AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIF  390 (460)
T ss_dssp             --TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence              344444466666666665554444777788887776654444467899999999999999999999999999998877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-------hChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018885          218 RSNDSLLVFSVIYIVMNVILIQS-------AGSVGLILANSLNMILRIIYSAIFIKHYFQG  271 (349)
Q Consensus       218 ~~~~~m~~~s~~fl~~~~~l~~~-------~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~  271 (349)
                      ..+....  .++.+..++++...       +|..|..+|..+...++.+......+|..++
T Consensus       391 ~~~~~~~--~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~~  449 (460)
T 3mkt_A          391 HRTFISY--WVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQ  449 (460)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCCS
T ss_pred             HHHHHHH--HHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7665433  13444556668887       9999999999999999988877665555443

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=98.62  E-value=5.5e-08  Score=94.65  Aligned_cols=202  Identities=12%  Similarity=0.066  Sum_probs=145.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhh
Q 018885           58 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  137 (349)
Q Consensus        58 ~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~  137 (349)
                      .-|++++++.+.+.+++...+.+--|+.++++ .++++.|.|++++.+-. +...+...+..+..+..+|...++|+++ 
T Consensus        10 ~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~-~~~~~~~g~~~~~~~~is~~~g~~~~~~-   86 (460)
T 3mkt_A           10 EASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWL-PSILFGVGLLMALVPVVAQLNGAGRQHK-   86 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHH-HHHHHHHHHHHHHGGGCTTTTSSSSTTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCChhH-
Confidence            35789999999999999999999999999999 68999999999999944 4455666777777777777665554333 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHH
Q 018885          138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK  217 (349)
Q Consensus       138 ~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~  217 (349)
                        .++.+...+.....++++... +...++++++++.++.-....+.+.+++++..+|+.+++.+..++.++..+.+...
T Consensus        87 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           87 --IPFEVHQGLILALLVSVPIIA-VLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence              555655566666666665433 24444555543322211111234568888899999999999999999999888766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh------hChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885          218 RSNDSLLVFSVIYIVMNVILIQS------AGSVGLILANSLNMILRIIYSAIFIKHY  268 (349)
Q Consensus       218 ~~~~~m~~~s~~fl~~~~~l~~~------~G~~GlI~AN~~nM~lRi~~s~~fI~~~  268 (349)
                      ..+....+   +-+..+++++..      +|..|..+|..+...+-.+....++++.
T Consensus       164 ~~~~~~~~---~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~  217 (460)
T 3mkt_A          164 VIGFIGLL---LNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS  217 (460)
T ss_dssp             HHHHHHHH---HHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHH---HHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            55554444   444555667753      7999999999998888888777776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00