Citrus Sinensis ID: 018919
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR9 | 367 | Peroxisomal (S)-2-hydroxy | yes | no | 0.988 | 0.940 | 0.855 | 1e-177 | |
| P05414 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.994 | 0.940 | 0.834 | 1e-174 | |
| Q9LRS0 | 367 | Peroxisomal (S)-2-hydroxy | yes | no | 0.988 | 0.940 | 0.831 | 1e-173 | |
| O49506 | 368 | Peroxisomal (S)-2-hydroxy | no | no | 0.965 | 0.915 | 0.812 | 1e-170 | |
| Q10CE4 | 369 | Peroxisomal (S)-2-hydroxy | yes | no | 0.997 | 0.943 | 0.808 | 1e-167 | |
| B8AKX6 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.997 | 0.943 | 0.808 | 1e-167 | |
| Q6YT73 | 369 | Peroxisomal (S)-2-hydroxy | no | no | 0.971 | 0.918 | 0.816 | 1e-166 | |
| B8B7C5 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.971 | 0.918 | 0.816 | 1e-166 | |
| Q7FAS1 | 367 | Peroxisomal (S)-2-hydroxy | no | no | 0.971 | 0.923 | 0.775 | 1e-157 | |
| B8AUI3 | 367 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.971 | 0.923 | 0.775 | 1e-157 |
| >sp|Q9LRR9|GLO1_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Arabidopsis thaliana GN=GLO1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 620 bits (1598), Expect = e-177, Method: Compositional matrix adjust.
Identities = 315/368 (85%), Positives = 333/368 (90%), Gaps = 23/368 (6%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDE---------------------DVKWLQTITKLPILVKGVLTAEDARIA 221
NF+GLDLGKMDE DV+WLQTITKLPILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 341
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT- 360
Query: 342 LPRPVPRL 349
PRP RL
Sbjct: 361 -PRPSARL 367
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5 |
| >sp|P05414|GOX_SPIOL Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function description |
|---|
Score = 609 bits (1571), Expect = e-174, Method: Compositional matrix adjust.
Identities = 307/368 (83%), Positives = 327/368 (88%), Gaps = 21/368 (5%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 183 NFQGLDLGKMD---------------------EDVKWLQTITKLPILVKGVLTAEDARIA 221
NF+G+DLGKMD +DV WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 341
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 302 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 361
Query: 342 LPRPVPRL 349
R V RL
Sbjct: 362 SSRAVARL 369
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q9LRS0|GLO2_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 OS=Arabidopsis thaliana GN=GLO2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 606 bits (1562), Expect = e-173, Method: Compositional matrix adjust.
Identities = 306/368 (83%), Positives = 330/368 (89%), Gaps = 23/368 (6%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDV+KIDM
Sbjct: 2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTA QKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+R VV QLVRRAE+AGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDE---------------------DVKWLQTITKLPILVKGVLTAEDARIA 221
NF+GLDLGKMDE D++WLQTIT +PILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDARIA 241
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 341
ASGIFIGRPVV++LAAEGE GV++VL+MLR+EFEL MALSGCRSL EITR+HIVTEWD
Sbjct: 302 ASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWDT- 360
Query: 342 LPRPVPRL 349
PR +PRL
Sbjct: 361 -PRHLPRL 367
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|O49506|GLO5_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 597 bits (1540), Expect = e-170, Method: Compositional matrix adjust.
Identities = 291/358 (81%), Positives = 319/358 (89%), Gaps = 21/358 (5%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYE IAKEKLPKMV+DYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID++
Sbjct: 2 EITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDVS 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGF ISMPIMIAPTAMQKMAHP+GE ATARA SAAGTIMTLSSW+T SVEEVASTGP
Sbjct: 62 TTVLGFNISMPIMIAPTAMQKMAHPDGELATARATSAAGTIMTLSSWATCSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVV QLV+RAE AGFKAIALTVDTPRLGRRE+DIKNRF LP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPRLGRRESDIKNRFALPRGLTLK 181
Query: 183 NFQGLDLGKMD---------------------EDVKWLQTITKLPILVKGVLTAEDARIA 221
NF+GLDLGK+D +D+KWLQ+IT LPILVKGV+TAEDARIA
Sbjct: 182 NFEGLDLGKIDKTNDSGLASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAEDARIA 241
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
V+ GAAGIIVSNHGARQLDYVPATI+ALEEVVKA +GRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VEYGAAGIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFLDGGVRRGTDVFKALALG 301
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 339
ASG+F+GRP ++SLAA+GE GVR++L+MLR+EFEL MALSGCRSL+EI+R HI T+WD
Sbjct: 302 ASGVFVGRPSLFSLAADGEAGVRKMLQMLRDEFELTMALSGCRSLREISRTHIKTDWD 359
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q10CE4|GLO1_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. japonica GN=GLO1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 589 bits (1518), Expect = e-167, Method: Compositional matrix adjust.
Identities = 299/370 (80%), Positives = 325/370 (87%), Gaps = 22/370 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMD---------------------EDVKWLQTITKLPILVKGVLTAEDAR 219
LKNF+GLDL +MD +DVKWLQ+IT LPILVKGV+TAEDAR
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279
+AV +GAAGIIVSNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 280 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 339
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 340 ASLPRPVPRL 349
L RP PRL
Sbjct: 361 -RLARPFPRL 369
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8AKX6|GLO1_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. indica GN=GLO1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 589 bits (1518), Expect = e-167, Method: Compositional matrix adjust.
Identities = 299/370 (80%), Positives = 325/370 (87%), Gaps = 22/370 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMD---------------------EDVKWLQTITKLPILVKGVLTAEDAR 219
LKNF+GLDL +MD +DVKWLQ+IT LPILVKGV+TAEDAR
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279
+AV +GAAGIIVSNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 280 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 339
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 340 ASLPRPVPRL 349
L RP PRL
Sbjct: 361 -RLARPFPRL 369
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q6YT73|GLO5_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. japonica GN=GLO5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 585 bits (1507), Expect = e-166, Method: Compositional matrix adjust.
Identities = 294/360 (81%), Positives = 321/360 (89%), Gaps = 21/360 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDE---------------------DVKWLQTITKLPILVKGVLTAEDAR 219
LKNF+GL+LGKMD+ DVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279
+AV+ GAAGIIVSNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 280 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 339
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8B7C5|GLO5_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. indica GN=GLO5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 585 bits (1507), Expect = e-166, Method: Compositional matrix adjust.
Identities = 294/360 (81%), Positives = 321/360 (89%), Gaps = 21/360 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDE---------------------DVKWLQTITKLPILVKGVLTAEDAR 219
LKNF+GL+LGKMD+ DVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279
+AV+ GAAGIIVSNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 280 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 339
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q7FAS1|GLO3_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. japonica GN=GLO3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 556 bits (1432), Expect = e-157, Method: Compositional matrix adjust.
Identities = 279/360 (77%), Positives = 308/360 (85%), Gaps = 21/360 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+
Sbjct: 1 MELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRIN 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M T VLGF ISMPIMIAP+AMQKMAHPEGE ATARAASAAGTIMTLSSWSTSSVEEV S
Sbjct: 61 MATNVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
PGIRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L
Sbjct: 121 APGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLV 180
Query: 181 LKNFQGLDLGKMDE---------------------DVKWLQTITKLPILVKGVLTAEDAR 219
LKNF+ LDLGKMD+ DVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTR 240
Query: 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279
+AV++GAAGIIVSNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALA 300
Query: 280 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 339
LGASG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 301 LGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8AUI3|GLO3_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. indica GN=GLO3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 556 bits (1432), Expect = e-157, Method: Compositional matrix adjust.
Identities = 279/360 (77%), Positives = 308/360 (85%), Gaps = 21/360 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+
Sbjct: 1 MELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRIN 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M T VLGF ISMPIMIAP+AMQKMAHPEGE ATARAASAAGTIMTLSSWSTSSVEEV S
Sbjct: 61 MATNVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
PGIRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L
Sbjct: 121 APGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLV 180
Query: 181 LKNFQGLDLGKMDE---------------------DVKWLQTITKLPILVKGVLTAEDAR 219
LKNF+ LDLGKMD+ DVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTR 240
Query: 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279
+AV++GAAGIIVSNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALA 300
Query: 280 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 339
LGASG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 301 LGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | ||||||
| 147789493 | 371 | hypothetical protein VITISV_005886 [Viti | 0.994 | 0.935 | 0.862 | 0.0 | |
| 189418957 | 369 | glycolate oxidase [Mikania micrantha] | 0.991 | 0.937 | 0.850 | 1e-180 | |
| 323650489 | 370 | glycolate oxidase [Mangifera indica] | 1.0 | 0.943 | 0.867 | 1e-179 | |
| 297790174 | 369 | hypothetical protein ARALYDRAFT_333142 [ | 0.994 | 0.940 | 0.869 | 1e-179 | |
| 304368145 | 371 | glycolate oxidase [Nicotiana benthamiana | 0.994 | 0.935 | 0.863 | 1e-178 | |
| 224121620 | 369 | predicted protein [Populus trichocarpa] | 0.994 | 0.940 | 0.866 | 1e-177 | |
| 225462096 | 371 | PREDICTED: peroxisomal (S)-2-hydroxy-aci | 0.994 | 0.935 | 0.864 | 1e-177 | |
| 224117076 | 369 | predicted protein [Populus trichocarpa] | 0.994 | 0.940 | 0.861 | 1e-177 | |
| 366984550 | 367 | glycolate oxidase [Gossypium hirsutum] | 0.988 | 0.940 | 0.864 | 1e-177 | |
| 359806771 | 371 | peroxisomal (S)-2-hydroxy-acid oxidase G | 0.994 | 0.935 | 0.864 | 1e-177 |
| >gi|147789493|emb|CAN67413.1| hypothetical protein VITISV_005886 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/370 (86%), Positives = 335/370 (90%), Gaps = 23/370 (6%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTL +NR+AFS+ILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASA GTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASATGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDR+VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMD---------------------EDVKWLQTITKLPILVKGVLTAEDARIA 221
NF+GLDLGKMD +DVKWLQTIT LPILVKGVLTAED R+A
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTRLA 241
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 341
ASGIFIGRPVV+SLAAEGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIVTEW+
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVTEWEVP 361
Query: 342 LP--RPVPRL 349
P RP+PRL
Sbjct: 362 HPGSRPLPRL 371
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|189418957|gb|ACD93720.1| glycolate oxidase [Mikania micrantha] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 312/367 (85%), Positives = 331/367 (90%), Gaps = 21/367 (5%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+TNV EYEAIAKEKLPKMV+DYYASGAEDQWTL+E+RNAFSRILFRPRILIDVSKI M T
Sbjct: 3 VTNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLEESRNAFSRILFRPRILIDVSKIVMTT 62
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
T+LGFKISMPIM+APTAMQKMAHPEGEYATARAAS+AGTIMTLSSW+TSSVEE ASTGPG
Sbjct: 63 TILGFKISMPIMVAPTAMQKMAHPEGEYATARAASSAGTIMTLSSWATSSVEEAASTGPG 122
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN
Sbjct: 123 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 182
Query: 184 FQGLDLGKMDE---------------------DVKWLQTITKLPILVKGVLTAEDARIAV 222
F+GLDLGKMDE DV+WLQTITK+PILVKGV+TAED R+A+
Sbjct: 183 FEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKMPILVKGVITAEDTRLAI 242
Query: 223 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282
QAGAAGIIVSNHGARQLDYVPATI ALEEVVKA QGR+PVFLDGGVRRGTDVFKALALGA
Sbjct: 243 QAGAAGIIVSNHGARQLDYVPATISALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGA 302
Query: 283 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASL 342
+GIFIGRPVV SLAAEGE GVR+VL+MLR+EFEL MALSGC SLKEITRDHIVTEWDA
Sbjct: 303 AGIFIGRPVVLSLAAEGEAGVRKVLQMLRDEFELTMALSGCTSLKEITRDHIVTEWDAPK 362
Query: 343 PRPVPRL 349
RP PRL
Sbjct: 363 ARPAPRL 369
|
Source: Mikania micrantha Species: Mikania micrantha Genus: Mikania Family: Asteraceae Order: Asterales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|323650489|gb|ADX97325.1| glycolate oxidase [Mangifera indica] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 321/370 (86%), Positives = 338/370 (91%), Gaps = 21/370 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M EITNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MEEITNVMEYEAIAKQKLPKMVFDYYASGAEDQWTLRENRFAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
Query: 181 LKNFQGLDLGKMDE---------------------DVKWLQTITKLPILVKGVLTAEDAR 219
L+NF+GLDLGKMD+ DVKWLQTITKLPILVKGVLTAEDAR
Sbjct: 181 LRNFEGLDLGKMDQANDSGLASYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
Query: 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279
+A+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA+QGR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKASQGRVPVFLDGGVRRGTDVFKALA 300
Query: 280 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 339
LGASGIFIGRPVV+SLAA+GE G+R+ L+MLR+EFEL MALSGCRSLKEITRDHIVT+WD
Sbjct: 301 LGASGIFIGRPVVFSLAADGEAGIRKALQMLRDEFELTMALSGCRSLKEITRDHIVTDWD 360
Query: 340 ASLPRPVPRL 349
PR PRL
Sbjct: 361 LPQPRIAPRL 370
|
Source: Mangifera indica Species: Mangifera indica Genus: Mangifera Family: Anacardiaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790174|ref|XP_002862992.1| hypothetical protein ARALYDRAFT_333142 [Arabidopsis lyrata subsp. lyrata] gi|297839705|ref|XP_002887734.1| hypothetical protein ARALYDRAFT_895734 [Arabidopsis lyrata subsp. lyrata] gi|297308786|gb|EFH39251.1| hypothetical protein ARALYDRAFT_333142 [Arabidopsis lyrata subsp. lyrata] gi|297333575|gb|EFH63993.1| hypothetical protein ARALYDRAFT_895734 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust.
Identities = 320/368 (86%), Positives = 337/368 (91%), Gaps = 21/368 (5%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVNEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP+LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPYLTLK 181
Query: 183 NFQGLDLGKMDE---------------------DVKWLQTITKLPILVKGVLTAEDARIA 221
NF+GLDLGKMDE DV+WLQTITKLPILVKGVLTAEDAR+A
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTAEDARMA 241
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
VQAGAAGIIVSNHGARQLDYVPATI+ALEEVVKA QG+IPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPATIIALEEVVKAAQGKIPVFLDGGVRRGTDVFKALALG 301
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 341
ASGIFIGRPVV+SLAAEGE GVR+VL+M+REEFEL MALSGC SLKEITR+HI+T+WDA
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMMREEFELTMALSGCTSLKEITRNHIITDWDAP 361
Query: 342 LPRPVPRL 349
R VP+L
Sbjct: 362 QARLVPKL 369
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|304368145|gb|ADM26718.1| glycolate oxidase [Nicotiana benthamiana] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 322/373 (86%), Positives = 338/373 (90%), Gaps = 26/373 (6%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M E+TNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKID
Sbjct: 1 MEEVTNVMEYEAIAKKKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDE---------------------DVKWLQTITKLPILVKGVLTAEDAR 219
LKNF+GLDLGKMD+ DV+WLQTIT LPILVKGVLTAEDAR
Sbjct: 181 LKNFEGLDLGKMDQASDSGLASYVAGQIDRTLSWKDVQWLQTITSLPILVKGVLTAEDAR 240
Query: 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279
+AVQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALA 300
Query: 280 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 339
LGASGIFIGRPVV+SLAAEGE G+++VL+MLR+EFEL MALSGCRSL EITR+HIVTEWD
Sbjct: 301 LGASGIFIGRPVVFSLAAEGEAGIKKVLQMLRDEFELTMALSGCRSLNEITRNHIVTEWD 360
Query: 340 ASLPR---PVPRL 349
A PR P PRL
Sbjct: 361 A--PRAALPAPRL 371
|
Source: Nicotiana benthamiana Species: Nicotiana benthamiana Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121620|ref|XP_002330746.1| predicted protein [Populus trichocarpa] gi|118486606|gb|ABK95141.1| unknown [Populus trichocarpa] gi|222872522|gb|EEF09653.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 319/368 (86%), Positives = 334/368 (90%), Gaps = 21/368 (5%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMD---------------------EDVKWLQTITKLPILVKGVLTAEDARIA 221
NF+GLDLGKMD +DV+WLQTITKLPILVKGVLTAEDAR++
Sbjct: 182 NFEGLDLGKMDKAADSGLASYVAGQIDRTLSWKDVEWLQTITKLPILVKGVLTAEDARLS 241
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
VQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 341
ASGIFIGRPVV+SLA+EGE GVR+VL+MLREEFEL MALSGCRSLKEITR HIV +WD
Sbjct: 302 ASGIFIGRPVVFSLASEGETGVRKVLQMLREEFELTMALSGCRSLKEITRAHIVADWDHP 361
Query: 342 LPRPVPRL 349
L R PRL
Sbjct: 362 LNRLAPRL 369
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462096|ref|XP_002277249.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Vitis vinifera] gi|296086772|emb|CBI32921.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 320/370 (86%), Positives = 336/370 (90%), Gaps = 23/370 (6%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTL +NR+AFS+ILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDR+VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMD---------------------EDVKWLQTITKLPILVKGVLTAEDARIA 221
NF+GLDLGKMD +DVKWLQTIT LPILVKGVLTAED R+A
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTRLA 241
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 341
ASGIFIGRPVV+SLAAEGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIVTEW+
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVTEWEVP 361
Query: 342 LP--RPVPRL 349
P RP+PRL
Sbjct: 362 PPGSRPLPRL 371
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117076|ref|XP_002317470.1| predicted protein [Populus trichocarpa] gi|118489504|gb|ABK96554.1| unknown [Populus trichocarpa x Populus deltoides] gi|222860535|gb|EEE98082.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 317/368 (86%), Positives = 335/368 (91%), Gaps = 21/368 (5%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVMEYEAIAKQKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRF+LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFSLPPFLTLK 181
Query: 183 NFQGLDLGKMD---------------------EDVKWLQTITKLPILVKGVLTAEDARIA 221
NF+GLDLGKMD +DV+WLQTIT+LPILVKGVLTAEDAR++
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVEWLQTITRLPILVKGVLTAEDARLS 241
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
VQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 341
ASGIFIGRPVV+SLA+EGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIV +WD
Sbjct: 302 ASGIFIGRPVVFSLASEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVADWDHP 361
Query: 342 LPRPVPRL 349
R P+L
Sbjct: 362 RARLAPKL 369
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|366984550|gb|AEX09184.1| glycolate oxidase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust.
Identities = 318/368 (86%), Positives = 335/368 (91%), Gaps = 23/368 (6%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITN+ EYEAIAKEKLPKMV+DYYASGAEDQWTL+ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNITEYEAIAKEKLPKMVYDYYASGAEDQWTLKENRNAFSRILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVE+VASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEDVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMD---------------------EDVKWLQTITKLPILVKGVLTAEDARIA 221
NF+GL+LGKMD +DVKWLQTIT LPILVKGVL AEDAR+A
Sbjct: 182 NFEGLNLGKMDKTDDSGLASYVAGQIDRSLSWKDVKWLQTITSLPILVKGVLNAEDARLA 241
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 341
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEITR+HIV +WD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVADWDQ- 360
Query: 342 LPRPVPRL 349
PR VPRL
Sbjct: 361 -PRVVPRL 367
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359806771|ref|NP_001241302.1| peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like [Glycine max] gi|167961875|dbj|BAG09382.1| peroxisomal glycolate oxidase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust.
Identities = 320/370 (86%), Positives = 335/370 (90%), Gaps = 23/370 (6%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID+
Sbjct: 2 EITNVSEYEAIAKQKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDIT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMLAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMD---------------------EDVKWLQTITKLPILVKGVLTAEDARIA 221
NF+GLDLGKMD +DVKWLQTITKLPILVKGVLTAED RIA
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITKLPILVKGVLTAEDTRIA 241
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
VQ+GAAGIIVSNHGARQLDYVPATI ALEEVVKA +GR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQSGAAGIIVSNHGARQLDYVPATISALEEVVKAAEGRVPVFLDGGVRRGTDVFKALALG 301
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA- 340
ASGIFIGRPVV+SLAAEGE GVR VL MLREEFEL MALSGC SLK+ITRDHIVT+WD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRNVLRMLREEFELTMALSGCTSLKDITRDHIVTDWDQP 361
Query: 341 -SLPRPVPRL 349
++PR +PRL
Sbjct: 362 RTIPRALPRL 371
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | ||||||
| TAIR|locus:2091642 | 367 | GOX1 "glycolate oxidase 1" [Ar | 0.550 | 0.523 | 0.880 | 1.7e-150 | |
| UNIPROTKB|B8AKX6 | 369 | GLO1 "Peroxisomal (S)-2-hydrox | 0.555 | 0.525 | 0.855 | 1.3e-143 | |
| UNIPROTKB|Q10CE4 | 369 | GLO1 "Peroxisomal (S)-2-hydrox | 0.555 | 0.525 | 0.855 | 1.3e-143 | |
| UNIPROTKB|B8B7C5 | 369 | GLO5 "Peroxisomal (S)-2-hydrox | 0.555 | 0.525 | 0.860 | 4.3e-143 | |
| UNIPROTKB|Q6YT73 | 369 | GLO5 "Peroxisomal (S)-2-hydrox | 0.555 | 0.525 | 0.860 | 4.3e-143 | |
| TAIR|locus:2124499 | 368 | GOX3 "glycolate oxidase 3" [Ar | 0.550 | 0.521 | 0.854 | 2.7e-141 | |
| UNIPROTKB|B8AUI3 | 367 | GLO3 "Peroxisomal (S)-2-hydrox | 0.547 | 0.520 | 0.811 | 3.2e-134 | |
| UNIPROTKB|Q7FAS1 | 367 | GLO3 "Peroxisomal (S)-2-hydrox | 0.547 | 0.520 | 0.811 | 3.2e-134 | |
| UNIPROTKB|Q01KC2 | 368 | GLO2 "Peroxisomal (S)-2-hydrox | 0.555 | 0.527 | 0.664 | 4.7e-118 | |
| UNIPROTKB|Q7XPR4 | 368 | GLO2 "Peroxisomal (S)-2-hydrox | 0.555 | 0.527 | 0.664 | 4.7e-118 |
| TAIR|locus:2091642 GOX1 "glycolate oxidase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 1.7e-150, Sum P(2) = 1.7e-150
Identities = 169/192 (88%), Positives = 179/192 (93%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEY GTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDE 194
NF+GLDLGKMDE
Sbjct: 182 NFEGLDLGKMDE 193
|
|
| UNIPROTKB|B8AKX6 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 1.3e-143, Sum P(2) = 1.3e-143
Identities = 166/194 (85%), Positives = 180/194 (92%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDE 194
LKNF+GLDL +MD+
Sbjct: 181 LKNFEGLDLAEMDK 194
|
|
| UNIPROTKB|Q10CE4 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 1.3e-143, Sum P(2) = 1.3e-143
Identities = 166/194 (85%), Positives = 180/194 (92%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDE 194
LKNF+GLDL +MD+
Sbjct: 181 LKNFEGLDLAEMDK 194
|
|
| UNIPROTKB|B8B7C5 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 870 (311.3 bits), Expect = 4.3e-143, Sum P(2) = 4.3e-143
Identities = 167/194 (86%), Positives = 179/194 (92%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDE 194
LKNF+GL+LGKMD+
Sbjct: 181 LKNFEGLELGKMDQ 194
|
|
| UNIPROTKB|Q6YT73 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 870 (311.3 bits), Expect = 4.3e-143, Sum P(2) = 4.3e-143
Identities = 167/194 (86%), Positives = 179/194 (92%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDE 194
LKNF+GL+LGKMD+
Sbjct: 181 LKNFEGLELGKMDQ 194
|
|
| TAIR|locus:2124499 GOX3 "glycolate oxidase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 840 (300.8 bits), Expect = 2.7e-141, Sum P(2) = 2.7e-141
Identities = 164/192 (85%), Positives = 174/192 (90%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYE IAKEKLPKMV+DYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID++
Sbjct: 2 EITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDVS 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
TTVLGF ISMPIMIAPTAMQKMAHP+GE GTIMTLSSW+T SVEEVASTGP
Sbjct: 62 TTVLGFNISMPIMIAPTAMQKMAHPDGELATARATSAAGTIMTLSSWATCSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVV QLV+RAE AGFKAIALTVDTPRLGRRE+DIKNRF LP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPRLGRRESDIKNRFALPRGLTLK 181
Query: 183 NFQGLDLGKMDE 194
NF+GLDLGK+D+
Sbjct: 182 NFEGLDLGKIDK 193
|
|
| UNIPROTKB|B8AUI3 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 798 (286.0 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
Identities = 155/191 (81%), Positives = 166/191 (86%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+M T
Sbjct: 4 ITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRINMAT 63
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPG 123
VLGF ISMPIMIAP+AMQKMAHPEGE GTIMTLSSWSTSSVEEV S PG
Sbjct: 64 NVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSAAPG 123
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L LKN
Sbjct: 124 IRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLVLKN 183
Query: 184 FQGLDLGKMDE 194
F+ LDLGKMD+
Sbjct: 184 FEALDLGKMDK 194
|
|
| UNIPROTKB|Q7FAS1 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 798 (286.0 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
Identities = 155/191 (81%), Positives = 166/191 (86%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+M T
Sbjct: 4 ITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRINMAT 63
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPG 123
VLGF ISMPIMIAP+AMQKMAHPEGE GTIMTLSSWSTSSVEEV S PG
Sbjct: 64 NVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSAAPG 123
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L LKN
Sbjct: 124 IRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLVLKN 183
Query: 184 FQGLDLGKMDE 194
F+ LDLGKMD+
Sbjct: 184 FEALDLGKMDK 194
|
|
| UNIPROTKB|Q01KC2 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
Identities = 129/194 (66%), Positives = 155/194 (79%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M +TNV EYE +AK KLPKMV+D+YA AEDQWTL+EN AFSRILF+P +L+DVS ID
Sbjct: 1 MALVTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRILFQPVVLVDVSCID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ +VLG+ ISMPIMIAPTA+ K+AHPEGE TIMTLSSWS+ S+EEV
Sbjct: 61 MSMSVLGYNISMPIMIAPTALHKLAHPEGELATARAAAAAETIMTLSSWSSCSIEEVNLA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPG+RFFQL +YKDRN+V QL++RAE+AG+KAI LTVD P LGRREAD+KNRFTLP +
Sbjct: 121 GPGVRFFQLSIYKDRNLVQQLIQRAEKAGYKAIVLTVDAPWLGRREADVKNRFTLPQNVM 180
Query: 181 LKNFQGLDLGKMDE 194
LK F+GLD GK+DE
Sbjct: 181 LKIFEGLDQGKIDE 194
|
|
| UNIPROTKB|Q7XPR4 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
Identities = 129/194 (66%), Positives = 155/194 (79%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M +TNV EYE +AK KLPKMV+D+YA AEDQWTL+EN AFSRILF+P +L+DVS ID
Sbjct: 1 MALVTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRILFQPVVLVDVSCID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ +VLG+ ISMPIMIAPTA+ K+AHPEGE TIMTLSSWS+ S+EEV
Sbjct: 61 MSMSVLGYNISMPIMIAPTALHKLAHPEGELATARAAAAAETIMTLSSWSSCSIEEVNLA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPG+RFFQL +YKDRN+V QL++RAE+AG+KAI LTVD P LGRREAD+KNRFTLP +
Sbjct: 121 GPGVRFFQLSIYKDRNLVQQLIQRAEKAGYKAIVLTVDAPWLGRREADVKNRFTLPQNVM 180
Query: 181 LKNFQGLDLGKMDE 194
LK F+GLD GK+DE
Sbjct: 181 LKIFEGLDQGKIDE 194
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B8B8K5 | GLO4_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.5722 | 0.9570 | 0.9125 | N/A | no |
| Q54E41 | HAOX_DICDI | 1, ., 1, ., 3, ., 1, 5 | 0.5069 | 0.9627 | 0.8659 | yes | no |
| Q9LRR9 | GLO1_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.8559 | 0.9885 | 0.9400 | yes | no |
| Q01KC2 | GLO2_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.6666 | 0.9713 | 0.9211 | N/A | no |
| B7M492 | LLDD_ECO8A | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
| P20932 | MDLB_PSEPU | 1, ., 1, ., 9, 9, ., 3, 1 | 0.36 | 0.9512 | 0.8447 | yes | no |
| B7L725 | LLDD_ECO55 | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
| Q87G18 | LLDD_VIBPA | 1, ., 1, ., 2, ., 3 | 0.3395 | 0.9512 | 0.8759 | yes | no |
| B8AUI3 | GLO3_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.775 | 0.9713 | 0.9237 | N/A | no |
| Q3YVX0 | LLDD_SHISS | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
| B7NER0 | LLDD_ECOLU | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
| A7IMB0 | LLDD_XANP2 | 1, ., 1, ., 2, ., 3 | 0.3462 | 0.9770 | 0.8788 | yes | no |
| A7MNF6 | LLDD_CROS8 | 1, ., 1, ., 2, ., 3 | 0.3502 | 0.9512 | 0.8279 | yes | no |
| B8B7C5 | GLO5_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.8166 | 0.9713 | 0.9186 | N/A | no |
| Q6YT73 | GLO5_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.8166 | 0.9713 | 0.9186 | no | no |
| Q0SYD1 | LLDD_SHIF8 | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
| B1LK44 | LLDD_ECOSM | 1, ., 1, ., 2, ., 3 | 0.3430 | 0.9484 | 0.8358 | yes | no |
| A8A670 | LLDD_ECOHS | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
| O49506 | GLO5_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.8128 | 0.9656 | 0.9157 | no | no |
| Q10CE4 | GLO1_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.8081 | 0.9971 | 0.9430 | yes | no |
| A7ZTF9 | LLDD_ECO24 | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
| B1IZI5 | LLDD_ECOLC | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
| Q9LRS0 | GLO2_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.8315 | 0.9885 | 0.9400 | yes | no |
| B6I3I4 | LLDD_ECOSE | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
| B8AKX6 | GLO1_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.8081 | 0.9971 | 0.9430 | N/A | no |
| B1X8M0 | LLDD_ECODH | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
| Q83PP7 | LLDD_SHIFL | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
| A1AHE2 | LLDD_ECOK1 | 1, ., 1, ., 2, ., 3 | 0.3376 | 0.9656 | 0.8510 | yes | no |
| Q9UJM8 | HAOX1_HUMAN | 1, ., 1, ., 3, ., 1, 5 | 0.5485 | 0.9312 | 0.8783 | yes | no |
| Q7FAS1 | GLO3_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.775 | 0.9713 | 0.9237 | no | no |
| Q6DAY3 | LLDD_ERWCT | 1, ., 1, ., 2, ., 3 | 0.3529 | 0.9512 | 0.8601 | yes | no |
| P05414 | GOX_SPIOL | 1, ., 1, ., 3, ., 1, 5 | 0.8342 | 0.9942 | 0.9403 | N/A | no |
| Q3ZBW2 | HAOX2_BOVIN | 1, ., 1, ., 3, ., 1, 5 | 0.4534 | 0.9255 | 0.9150 | yes | no |
| Q9WU19 | HAOX1_MOUSE | 1, ., 1, ., 3, ., 1, 5 | 0.5297 | 0.9398 | 0.8864 | yes | no |
| B2U5C2 | LLDD_SHIB3 | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
| Q329P9 | LLDD_SHIDS | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
| C4ZXJ7 | LLDD_ECOBW | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
| B5YWA7 | LLDD_ECO5E | 1, ., 1, ., 2, ., 3 | 0.3402 | 0.9656 | 0.8510 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.3 | 0.998 |
| 3rd Layer | 1.1.3.15 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | scaffold_202808.1 | annotation not avaliable (369 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh2_kg.3__3006__AT2G13360.2 | annotation not avaliable (401 aa) | • | • | • | • | 0.448 | ||||
 | Al_scaffold_0006_297 | Malate synthase Fragment (EC 2.3.3.9) (562 aa) | • | • | 0.431 | ||||||
 | fgenesh2_kg.6__602__AT5G06580.1 | annotation not avaliable (566 aa) | • | • | • | 0.421 | |||||
 | fgenesh2_kg.3__2397__AT3G21720.1 | annotation not avaliable (576 aa) | • | • | 0.415 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 349 | |||
| PLN02493 | 367 | PLN02493, PLN02493, probable peroxisomal (S)-2-hyd | 0.0 | |
| PLN02979 | 366 | PLN02979, PLN02979, glycolate oxidase | 0.0 | |
| PLN02535 | 364 | PLN02535, PLN02535, glycolate oxidase | 1e-180 | |
| cd02809 | 299 | cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom | 1e-170 | |
| pfam01070 | 302 | pfam01070, FMN_dh, FMN-dependent dehydrogenase | 1e-169 | |
| cd02922 | 344 | cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b | 1e-133 | |
| COG1304 | 360 | COG1304, idi, Isopentenyl diphosphate isomerase (B | 1e-119 | |
| cd04737 | 351 | cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN | 1e-117 | |
| cd03332 | 383 | cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) | 1e-115 | |
| cd04736 | 361 | cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li | 3e-95 | |
| TIGR02708 | 367 | TIGR02708, L_lactate_ox, L-lactate oxidase | 2e-85 | |
| PRK11197 | 381 | PRK11197, lldD, L-lactate dehydrogenase; Provision | 4e-82 | |
| TIGR03966 | 385 | TIGR03966, actino_HemFlav, heme/flavin dehydrogena | 1e-78 | |
| TIGR02151 | 333 | TIGR02151, IPP_isom_2, isopentenyl-diphosphate del | 2e-25 | |
| cd02811 | 326 | cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimeth | 9e-18 | |
| PRK05437 | 352 | PRK05437, PRK05437, isopentenyl pyrophosphate isom | 1e-16 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 7e-11 | |
| cd02808 | 392 | cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-b | 1e-09 | |
| cd04730 | 236 | cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD | 1e-07 | |
| cd00381 | 325 | cd00381, IMPDH, IMPDH: The catalytic domain of the | 8e-07 | |
| TIGR01302 | 450 | TIGR01302, IMP_dehydrog, inosine-5'-monophosphate | 2e-06 | |
| TIGR01304 | 369 | TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family | 6e-06 | |
| cd02810 | 289 | cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogena | 2e-05 | |
| COG0167 | 310 | COG0167, PyrD, Dihydroorotate dehydrogenase [Nucle | 2e-05 | |
| PRK05567 | 486 | PRK05567, PRK05567, inosine 5'-monophosphate dehyd | 2e-05 | |
| PRK08649 | 368 | PRK08649, PRK08649, inosine 5-monophosphate dehydr | 3e-05 | |
| COG2070 | 336 | COG2070, COG2070, Dioxygenases related to 2-nitrop | 6e-05 | |
| pfam01645 | 367 | pfam01645, Glu_synthase, Conserved region in gluta | 6e-05 | |
| PTZ00314 | 495 | PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd | 7e-05 | |
| PLN02826 | 409 | PLN02826, PLN02826, dihydroorotate dehydrogenase | 8e-05 | |
| COG0069 | 485 | COG0069, GltB, Glutamate synthase domain 2 [Amino | 1e-04 | |
| pfam00478 | 467 | pfam00478, IMPDH, IMP dehydrogenase / GMP reductas | 2e-04 | |
| pfam03060 | 329 | pfam03060, NMO, Nitronate monooxygenase | 3e-04 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 5e-04 | |
| PRK05437 | 352 | PRK05437, PRK05437, isopentenyl pyrophosphate isom | 0.001 | |
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 0.002 | |
| cd00945 | 201 | cd00945, Aldolase_Class_I, Class I aldolases | 0.003 | |
| TIGR01303 | 475 | TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family | 0.004 |
| >gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Score = 598 bits (1542), Expect = 0.0
Identities = 315/368 (85%), Positives = 333/368 (90%), Gaps = 23/368 (6%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDE---------------------DVKWLQTITKLPILVKGVLTAEDARIA 221
NF+GLDLGKMDE DV+WLQTITKLPILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 341
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT- 360
Query: 342 LPRPVPRL 349
PRP RL
Sbjct: 361 -PRPSARL 367
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Length = 367 |
| >gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase | Back alignment and domain information |
|---|
Score = 543 bits (1399), Expect = 0.0
Identities = 275/323 (85%), Positives = 289/323 (89%), Gaps = 23/323 (7%)
Query: 48 FRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS 107
FRPRILIDVSKIDM TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLS
Sbjct: 46 FRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLS 105
Query: 108 SWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167
SW+TSSVEEVASTGPGIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+
Sbjct: 106 SWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRES 165
Query: 168 DIKNRFTLPPFLTLKNFQGLDLGKMDE---------------------DVKWLQTITKLP 206
DIKNRFTLPP LTLKNF+GLDLGKMDE DV+WLQTITKLP
Sbjct: 166 DIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLP 225
Query: 207 ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266
ILVKGVLT EDARIA+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDG
Sbjct: 226 ILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDG 285
Query: 267 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 326
GVRRGTDVFKALALGASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSL
Sbjct: 286 GVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSL 345
Query: 327 KEITRDHIVTEWDASLPRPVPRL 349
KEI+R+HI TEWD PRP RL
Sbjct: 346 KEISRNHITTEWDT--PRPSARL 366
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Length = 366 |
| >gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase | Back alignment and domain information |
|---|
Score = 503 bits (1296), Expect = e-180
Identities = 223/360 (61%), Positives = 271/360 (75%), Gaps = 24/360 (6%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
EI NV E++ +AK+ LPKM +D+YA GAEDQ TL+EN AF RI FRPR+L+DVSKID
Sbjct: 2 ADEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKID 61
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+TT+LG+ IS PIMIAPTAM K+AHPEGE ATARAA+A TIM LS ++ +VEEVAS+
Sbjct: 62 MSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASS 121
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
+RF QLYVYK R++ AQLV+RAE+ G+KAI LT D PRLGRREADIKN+ P
Sbjct: 122 CNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISP---Q 178
Query: 181 LKNFQGL---------------------DLGKMDEDVKWLQTITKLPILVKGVLTAEDAR 219
LKNF+GL D +D++WL++IT LPIL+KGVLT EDA
Sbjct: 179 LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAI 238
Query: 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279
AV+ G AGIIVSNHGARQLDY PATI LEEVV+A GR+PV LDGGVRRGTDVFKALA
Sbjct: 239 KAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALA 298
Query: 280 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 339
LGA + +GRPV+Y LAA+GE GVR+V+EML++E E+ MALSGC S+K+ITR H+ TE +
Sbjct: 299 LGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERE 358
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Length = 364 |
| >gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Score = 473 bits (1221), Expect = e-170
Identities = 181/323 (56%), Positives = 223/323 (69%), Gaps = 25/323 (7%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
+ A+A+ +LPK VFDY GA D+ TL+ NR AF RI RPR+L DVSK D +TT+LG
Sbjct: 2 DLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQ 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ 128
K++MP IAPT +Q +AHP+GE ATARAA+AAG TLS+ ST+S+EEVA+ PG R+FQ
Sbjct: 62 KLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQ 121
Query: 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188
LYV +DR + L+RRAE AG+KA+ LTVDTP LGRR LT
Sbjct: 122 LYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-------------LTW------- 161
Query: 189 LGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMA 248
+D+ WL++ K P+++KG+LT EDA AV AGA GI+VSNHG RQLD PATI A
Sbjct: 162 -----DDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDA 216
Query: 249 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLE 308
L E+V A GRI V LDGG+RRGTDV KALALGA + IGRP +Y LAA GE GV VLE
Sbjct: 217 LPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLE 276
Query: 309 MLREEFELAMALSGCRSLKEITR 331
+LR+E E AMAL GC SL ++
Sbjct: 277 ILRDELERAMALLGCASLADLDP 299
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This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. Length = 299 |
| >gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase | Back alignment and domain information |
|---|
Score = 473 bits (1220), Expect = e-169
Identities = 168/323 (52%), Positives = 216/323 (66%), Gaps = 21/323 (6%)
Query: 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMP 73
A+ +LPK FDY GA D+ TL+ NR AF RI RPR+L DVS D++TT+LG ++S+P
Sbjct: 1 ARRRLPKFAFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSDRDLSTTLLGQRLSLP 60
Query: 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYK 133
IAPT MQ +AHP+GE A ARAA+AAG LS+ S++S+EEVA+ G +FQLYV K
Sbjct: 61 FGIAPTGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVAAAAGGPLWFQLYVPK 120
Query: 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193
DR + L+ RAE AG+KA+ LTVDTP LG RE D++
Sbjct: 121 DRELTEDLLERAEAAGYKALVLTVDTPVLGNRERDLRTW--------------------- 159
Query: 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV 253
+D+ WL+ K P++VKG+L+ EDA+ AV+AG GI+VSNHG RQLD PATI AL E+V
Sbjct: 160 DDLAWLRDQWKGPLVVKGILSPEDAKRAVEAGVDGIVVSNHGGRQLDGAPATIDALPEIV 219
Query: 254 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 313
A GRIPV +DGG+RRGTDV KALALGA + +GRP +Y LAA GE GV LE+LR+E
Sbjct: 220 AAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLYGLAAGGEAGVAHALEILRDE 279
Query: 314 FELAMALSGCRSLKEITRDHIVT 336
E MAL GC S+ ++T +
Sbjct: 280 LERTMALLGCTSIADLTPSLLRR 302
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Length = 302 |
| >gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Score = 381 bits (982), Expect = e-133
Identities = 155/340 (45%), Positives = 216/340 (63%), Gaps = 19/340 (5%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
++EA AK+ L K + YY+SGA+D+ TL+EN AF RI FRPR+L DV K+D +TT+LG
Sbjct: 2 DFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGH 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV--ASTGPGIRF 126
K+S+P I+P A+ K+AHP+GE ARAA G + +S+ ++ S+EE+ A F
Sbjct: 62 KVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLF 121
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD--IKNRFTLPPFLTLKNF 184
FQLYV KDR +L++RAE+ G KAI LTVD P LG+RE D +K + K
Sbjct: 122 FQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKT 181
Query: 185 QGLDLGKMD------------EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 232
+ G +D+KWL+ TKLPI++KGV T EDA +A + G GI++S
Sbjct: 182 KAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLS 241
Query: 233 NHGARQLDYVPATIMALEEVVK-ATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289
NHG RQLD PA I L E+ K + +I V++DGGVRRGTDV KAL LGA + +GR
Sbjct: 242 NHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGR 301
Query: 290 PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 329
P +Y+L+A GE+GV + +++L++E E M L G SL ++
Sbjct: 302 PFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQL 341
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. Length = 344 |
| >gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 347 bits (893), Expect = e-119
Identities = 152/354 (42%), Positives = 200/354 (56%), Gaps = 30/354 (8%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
V + A+ +LPK F Y GAED+ TL+ NR AF I RPR+L +V ID++TT L
Sbjct: 1 VADLRRAAQRRLPK-AFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFL 59
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF 126
G K+S PI+IAP +AHPEGE A+ A+AAG LS+ + +EEVA+ P
Sbjct: 60 GQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP---- 115
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--- 183
FQLY KDR LV RA AG K + LTVD+P G RE D N + P N
Sbjct: 116 FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNVLQ 175
Query: 184 ----------FQGLDLGKMD------------EDVKWLQTITKLPILVKGVLTAEDARIA 221
+G + ED + P+++KG+L EDA A
Sbjct: 176 EATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
GA GI VSNHG RQLD+ +T +L E+V+A RI V DGG+R G DV KALALG
Sbjct: 236 GGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALG 295
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335
A + IGRP +Y LAA GE GV RVLE++R+E ++AMAL+G ++++E+ R +V
Sbjct: 296 ADAVGIGRPFLYGLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPLV 349
|
Length = 360 |
| >gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Score = 344 bits (883), Expect = e-117
Identities = 148/346 (42%), Positives = 212/346 (61%), Gaps = 18/346 (5%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+I N+ + EA AK+ +PK F Y A G+ED+WTL+EN AF+ PR+L V D +
Sbjct: 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTS 63
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T +LG K+ PI++AP A +AH GE ATAR + G++ ++S++S +S+EE+A
Sbjct: 64 TELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASN 123
Query: 123 GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP---PF 178
G ++FQLY+ KD L+ RA+ AG KAI LT D G READI+N+F P P
Sbjct: 124 GGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPN 183
Query: 179 LTLKNFQGLDLGKMD-------------EDVKWLQTITKLPILVKGVLTAEDARIAVQAG 225
L +G GK D++++ I+ LP++VKG+ + EDA +A+ AG
Sbjct: 184 LN-HFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAG 242
Query: 226 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 285
A GI VSNHG RQLD PA+ +L E+ +A R+P+ D GVRRG VFKALA GA +
Sbjct: 243 ADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAV 302
Query: 286 FIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 331
+GRPV+Y LA G +GV VLE L +E ++ M L+G R+++++ R
Sbjct: 303 AVGRPVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKR 348
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 351 |
| >gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Score = 338 bits (869), Expect = e-115
Identities = 147/367 (40%), Positives = 208/367 (56%), Gaps = 39/367 (10%)
Query: 5 TNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTT 64
+ EA+A+E L F Y A GA + T + NR+AFSR PR+L V++ D++
Sbjct: 19 VDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVE 78
Query: 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-STGPG 123
+ G ++ P+++AP +Q++ HP+ E ATARAA+ G LS+ S+SS+E+VA + G
Sbjct: 79 LFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDA 138
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD-------------IK 170
R+FQLY KD ++ L+RRAE+AG++ + +T+DT LG R D I
Sbjct: 139 PRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIA 198
Query: 171 NRFTLPPFL-----------------------TLKNFQGLDLGKMDEDVKWLQTITKLPI 207
N F+ P F + F G L ED+ +L+ T LPI
Sbjct: 199 NYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTW--EDLAFLREWTDLPI 256
Query: 208 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 267
++KG+L +DAR AV+AG G++VSNHG RQ+D A + AL E+V+A R+ V D G
Sbjct: 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSG 316
Query: 268 VRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLK 327
VR G D+ KALALGA + IGRP Y LA GE GV VL L E +L M L+G RS+
Sbjct: 317 VRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIA 376
Query: 328 EITRDHI 334
E+TRD +
Sbjct: 377 ELTRDAL 383
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. Length = 383 |
| >gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Score = 287 bits (735), Expect = 3e-95
Identities = 146/363 (40%), Positives = 206/363 (56%), Gaps = 43/363 (11%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
+Y ++AK++LP+MVFDY GAED+ L+ NR+AF R F PR L+DVSK D++ ++ G
Sbjct: 2 DYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGK 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ 128
S P++IAPT + P G+ A ARAA+ AG LS+ S S+E+VA G +FQ
Sbjct: 62 VWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQ 121
Query: 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP------------ 176
LYV R + LV+RA AG+ + LT D G RE D++N F +P
Sbjct: 122 LYVVH-RELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGI 180
Query: 177 --PFLTLKNFQGLDLGK---------------------MD-----EDVKWLQTITKLPIL 208
P L+ + MD +D++WL+ + +L
Sbjct: 181 LHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLL 240
Query: 209 VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 268
VKG++TAEDA+ ++ GA G+I+SNHG RQLD A I AL E+V AT PV +D G+
Sbjct: 241 VKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATY--KPVLIDSGI 298
Query: 269 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 328
RRG+D+ KALALGA+ + +GR +Y LAA GE GV VL +L+EE + +AL GC +
Sbjct: 299 RRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIAS 358
Query: 329 ITR 331
+T
Sbjct: 359 LTP 361
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 361 |
| >gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase | Back alignment and domain information |
|---|
Score = 262 bits (670), Expect = 2e-85
Identities = 132/342 (38%), Positives = 194/342 (56%), Gaps = 15/342 (4%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+ N + E +A++ +PK F Y ASGA D +TL+EN AF+ L P +L DV
Sbjct: 12 DFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTE 71
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-ASTG 121
LG K+ P ++AP A K+A+ +GE ATAR S G+I T SS+ST+ + E+ +
Sbjct: 72 IEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALN 131
Query: 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP---PF 178
+FQ Y+ KD + ++ R + G KAI LT D G RE D++N F P P
Sbjct: 132 GTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPI 191
Query: 179 L----------TLKNFQGLDLGKMD-EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAA 227
+ ++ N K+ D++ + + LP+ VKG EDA A++AGA+
Sbjct: 192 VQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGAS 251
Query: 228 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287
GI V+NHG RQLD PA +L+EV +A R+P+ D GVRRG VFKALA GA + +
Sbjct: 252 GIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVAL 311
Query: 288 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 329
GRPV+Y LA G +G R+V E L +E + M L+G ++++++
Sbjct: 312 GRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTIEDV 353
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence [Energy metabolism, Other]. Length = 367 |
| >gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 254 bits (650), Expect = 4e-82
Identities = 132/374 (35%), Positives = 196/374 (52%), Gaps = 42/374 (11%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
I+ +Y A A+ +LP +F Y GA ++TL+ N + I R R+L D+S + + T
Sbjct: 3 ISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLET 62
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
T+ G K+SMP+ +AP + M GE ARAA A G TLS+ S +EEVA
Sbjct: 63 TLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKR 122
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
+FQLYV +DR + + RA+ AG + TVD P G R D + + P +
Sbjct: 123 PMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRY 182
Query: 184 FQGL----------------DLGKMD--------------------------EDVKWLQT 201
Q + DLG + +D++W++
Sbjct: 183 LQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRD 242
Query: 202 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 261
P+++KG+L EDAR AV+ GA GI+VSNHG RQLD V ++ AL + A +G I
Sbjct: 243 FWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIT 302
Query: 262 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 321
+ D G+R G DV + +ALGA + +GR VY+LAA G+ GV +L+++ +E +AM L+
Sbjct: 303 ILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLT 362
Query: 322 GCRSLKEITRDHIV 335
G +S+ EITRD +V
Sbjct: 363 GAKSISEITRDSLV 376
|
Length = 381 |
| >gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 1e-78
Identities = 140/373 (37%), Positives = 200/373 (53%), Gaps = 46/373 (12%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
V E + A+++LP+ V+ +G E TL +N AF + FRP + K +++TTV+
Sbjct: 8 VAEAQRRARKRLPRSVYAALIAGTEKGVTLADNVAAFDELGFRPHVAGAPPKRELSTTVM 67
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF 126
G +IS P++I+PT +Q + HP+GE A ARAA+A GT M LSS+++ VEEV + P F
Sbjct: 68 GQEISFPVLISPTGVQAV-HPDGEVAVARAAAARGTAMGLSSFASKPVEEVVAANPKT-F 125
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE---ADIKNRFTL-------- 175
FQ+Y R+ + + RA AG K + LT+D RR+ +I + L
Sbjct: 126 FQIYWVGSRDDILARLERARAAGAKGLILTLDWSFASRRDWGSPEIPEKIDLRTMLRFAP 185
Query: 176 -----------------PPFLTLKN----------FQGLDLGKMD------EDVKWLQTI 202
P LT+ N F G M EDV WL+
Sbjct: 186 EVLVRPGWLLRYLRSGRIPDLTVPNLALRGETPPTFFGAYGEWMGTPPPTWEDVAWLREQ 245
Query: 203 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 262
P ++KG+ +DAR AV AGA I VSNHG LD PA I AL + +A ++ V
Sbjct: 246 WGGPFMLKGITRPDDARRAVDAGATAISVSNHGGNNLDGTPAAIRALPAIAEAVGDQVEV 305
Query: 263 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 322
LDGG+RRG+DV KALALGA + IGR ++ LAA GE GV VL++LR+ + A+ G
Sbjct: 306 LLDGGIRRGSDVVKALALGARAVMIGRAYLWGLAANGEAGVENVLDILRQGIDSALLGLG 365
Query: 323 CRSLKEITRDHIV 335
S+ E++R+ +V
Sbjct: 366 KASVHELSREDLV 378
|
Members of this protein family possess an N-terminal heme-binding domain and C-terminal flavodehydrogenase domain, and share homology to yeast flavocytochrome b2, to E. coli L-lactate dehydrogenase [cytochrome], to (S)-mandelate dehydrogenase, etc. This enzyme appears only in the context of the mycofactocin system. Interestingly, it is absent from the four species detected so far with mycofactocin but without an F420 biosynthesis system. Length = 385 |
| >gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-25
Identities = 89/347 (25%), Positives = 139/347 (40%), Gaps = 67/347 (19%)
Query: 30 AEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87
Q F I L I++ ID+ T LG ++ P I AM
Sbjct: 10 CLKQNVEYGGSTGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYI--NAMTG-GSE 66
Query: 88 EG---EYATARAASAAGTIMTLSS-----------WSTSSVEEVASTGP---GIRFFQLY 130
E ARAA G M + S + V E A GP I QL
Sbjct: 67 EAGKINRNLARAARELGIPMGVGSQRAALKDPETADTFEVVREEAPNGPLIANIGAPQL- 125
Query: 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPR-LGRREADIKNRFTLPPFLTLKNFQGLDL 189
V + + E A+A+ ++ + L + E D +NF+G L
Sbjct: 126 VEGGPEEAQEAIDMIEA---DALAIHLNVLQELVQPEGD-------------RNFKGW-L 168
Query: 190 GKMDEDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHG---------AR 237
K+ E L +P++VK V ++ E A++ AG + I V+ G R
Sbjct: 169 EKIAEICSQL----SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYR 224
Query: 238 QLDYVPA---------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288
A T +L EV ++ P+ GG+R G DV KA+ALGA + +
Sbjct: 225 AKGSNLASFFNDWGIPTAASLLEV-RSDAPDAPIIASGGLRTGLDVAKAIALGADAVGMA 283
Query: 289 RPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335
RP + + EGE+ V +E++ EE ++AM L+G +++ E+ + +V
Sbjct: 284 RPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAELKKVPLV 330
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 333 |
| >gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 9e-18
Identities = 85/343 (24%), Positives = 133/343 (38%), Gaps = 88/343 (25%)
Query: 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGE---YATAR 95
F + L +D+ ID++T LG ++S P++I +AM + + A
Sbjct: 20 TGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLI--SAMTG-GSEKAKEINRNLAE 76
Query: 96 AASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK---- 151
AA G M + S A P + +VR A G
Sbjct: 77 AAEELGIAMGVGSQR------AALEDPELAESF-----------TVVREAPPNGPLIANL 119
Query: 152 -AIALTVDTPRLGRR-----EADIKNRFTLPPFLTL--------------KNFQGLDLGK 191
A+ L RR EAD L + ++F+G L +
Sbjct: 120 GAVQLNGYGVEEARRAVEMIEAD---------ALAIHLNPLQEAVQPEGDRDFRGW-LER 169
Query: 192 MDEDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHG---------ARQL 239
++E VK L +P++VK V ++ E A+ AG I V+ G R
Sbjct: 170 IEELVKAL----SVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAK 225
Query: 240 DYVPA-----------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288
D T +L EV ++ +P+ GG+R G D+ KALALGA + +
Sbjct: 226 DSDQRLAEYFADWGIPTAASLLEV-RSALPDLPLIASGGIRNGLDIAKALALGADLVGMA 284
Query: 289 RPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 331
P + A EGE+ V +E + EE AM L+G ++L E+ +
Sbjct: 285 GPFL-KAALEGEEAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. Length = 326 |
| >gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 1e-16
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 198 WLQTITKL------PILVKGV---LTAEDARIAVQAGAAGIIVSNHG---------ARQL 239
WL I ++ P++VK V ++ E A+ AG I V+ G R
Sbjct: 174 WLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRAR 233
Query: 240 DYVPA---------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290
D A T +L E ++ +P+ GG+R G D+ KALALGA + + P
Sbjct: 234 DDRLASYFADWGIPTAQSLLEA-RSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGP 292
Query: 291 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 331
+ + GE+ V ++E EE ++AM L+G +++ E+ +
Sbjct: 293 FLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRK 333
|
Length = 352 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 7e-11
Identities = 49/229 (21%), Positives = 82/229 (35%), Gaps = 42/229 (18%)
Query: 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS---------SVEEVASTGPGI 124
+++A A + E A A A + A I+ + S ++EVA+
Sbjct: 1 VILALLA-GGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLP 59
Query: 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184
QL + V A AG + + L R +
Sbjct: 60 LGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYLARED------------------ 101
Query: 185 QGLDLGKMDEDVKWL-QTITKLPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQL--D 240
E ++ L + + + ++VK T E A A +AG + + N G D
Sbjct: 102 --------LELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRD 153
Query: 241 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289
VP + L + + ++PV GG+ D +ALALGA G+ +G
Sbjct: 154 AVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAEALALGADGVIVGS 200
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 53/191 (27%), Positives = 71/191 (37%), Gaps = 54/191 (28%)
Query: 196 VKWLQTIT-KLPILVK---GVLTAEDARIAVQAGAAGIIVSNH----GARQL---DYV-- 242
++ L+ T PI VK G + A AGA I + GA L D+V
Sbjct: 205 IEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGL 264
Query: 243 PATIMALEEVVKATQG-----RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 297
P T + L +A R+ + GG+R G DV KALALGA + IG +L A
Sbjct: 265 P-TELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTA---ALIA 320
Query: 298 EG-----------------------------EKGVRRV---LEMLREEFELAMALSGCRS 325
G E RV L+ L EE A G RS
Sbjct: 321 LGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRS 380
Query: 326 LKEITRDHIVT 336
L+ + R ++
Sbjct: 381 LELLGRSDLLA 391
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. Length = 392 |
| >gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 1e-07
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 212 VLTAEDARIAVQAGAAGIIVSN-----HGARQLDYVPATIMAL-EEVVKATQGRIPVFLD 265
V + E+AR A AGA ++ H AL EV A IPV
Sbjct: 109 VTSVEEARKAEAAGADALVAQGAEAGGHRGTFD----IGTFALVPEVRDAV--DIPVIAA 162
Query: 266 GGVRRGTDVFKALALGASGIFIG 288
GG+ G + ALALGA G+ +G
Sbjct: 163 GGIADGRGIAAALALGADGVQMG 185
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 236 |
| >gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 8e-07
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 22/110 (20%)
Query: 196 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGIIV-----SNHGAR--------QLDY 241
+K++ + + ++ V+TAE AR + AGA G+ V S R Q
Sbjct: 126 IKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQ--- 182
Query: 242 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRP 290
AT A+ +V A + +PV DGG+R D+ KALA GA + +G
Sbjct: 183 --AT--AVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSL 228
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325 |
| >gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 22/110 (20%)
Query: 194 EDVKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQL 239
+ +K + +T L I+ V TAE A+ + AGA G+ IV+ G Q
Sbjct: 254 DSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQ- 312
Query: 240 DYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 288
I A+ +V + IPV DGG+R D+ KALA GA + +G
Sbjct: 313 ------ITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356
|
This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450 |
| >gnl|CDD|233351 TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-06
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 205 LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYV-------PATIM----ALEEVV 253
+P++ GV A ++ GAAG+IV GA V I A + +
Sbjct: 189 VPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYL 248
Query: 254 KATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 300
T GR + V DGG+ D+ KA+A GA + +G P+ + A G
Sbjct: 249 DETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGR 296
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302 [Unknown function, General]. Length = 369 |
| >gnl|CDD|239204 cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 61/288 (21%), Positives = 94/288 (32%), Gaps = 88/288 (30%)
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----TLSSWSTSSVEEVA 118
LG K+ P +A + K GE AA+ G ++ TL + + VA
Sbjct: 1 VNFLGLKLKNPFGVAAGPLLK----TGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVA 56
Query: 119 -----------------STG---PGIRFFQLYVYK-----DRNVV------------AQL 141
S G G+ + + K + +L
Sbjct: 57 RLPPEGESYPEQLGILNSFGLPNLGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVEL 116
Query: 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQT 201
R+ ERAG KA+ L + P +G R + N +K ++
Sbjct: 117 ARKIERAGAKALELNLSCPNVG------GGRQLGQDPEAVANL-----------LKAVKA 159
Query: 202 ITKLPILVK--GVLTAED----ARIAVQAGAAGIIVSNH-GARQLDYV------------ 242
+P+LVK ED A+ A +AGA G+ N R +D
Sbjct: 160 AVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGG 219
Query: 243 -------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 283
P + + + Q IP+ GG+ G DV + L GAS
Sbjct: 220 LSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGAS 267
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. Length = 289 |
| >gnl|CDD|223245 COG0167, PyrD, Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 37/161 (22%)
Query: 196 VKWLQTITKLPILVKGVLTAED------ARIAVQAGAAGIIVSNHGARQLDYVPATIM-- 247
++ ++ TK+P+ VK L A+ A +AGA G+I N + T
Sbjct: 153 LEAVKAATKVPVFVK--LAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPV 210
Query: 248 -------------------ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288
+ E+ K G IP+ GG+ G D + + GAS + +G
Sbjct: 211 LANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVG 270
Query: 289 RPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 329
++Y +G V+ +++ L + G S+++I
Sbjct: 271 TALIY----KGPGIVKEIIKGLAR----WLEEKGFESIQDI 303
|
Length = 310 |
| >gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 22/108 (20%)
Query: 196 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 241
V+ + + I+ V TAE AR ++AGA + IV+ G Q
Sbjct: 260 VREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQ--- 316
Query: 242 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 288
I A+ + +A + IPV DGG+R D+ KALA GAS + +G
Sbjct: 317 ----ITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360
|
Length = 486 |
| >gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 16/109 (14%)
Query: 206 PILVKGVLTAEDARIAVQAGAAGIIV--------SNHGARQLDYVP-AT-IM----ALEE 251
P++V G +T A ++ GAAG++V ++ G + VP AT I A +
Sbjct: 189 PVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIG-VPMATAIADVAAARRD 247
Query: 252 VVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 299
+ T GR + V DGG+ D+ KA+A GA + +G P+ + A G
Sbjct: 248 YLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG 296
|
Length = 368 |
| >gnl|CDD|224981 COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 211 GVLTAEDARIAVQAGAAGIIVSNHGA---RQLDYVPATIMAL-EEVVKATQGRIPVFLDG 266
V+T +A A +AGA +I A R + + AL EVV A G IPV G
Sbjct: 133 SVITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG-IPVIAAG 191
Query: 267 GVRRGTDVFKALALGASGIFIG 288
G+ G + ALALGA G+ +G
Sbjct: 192 GIADGRGIAAALALGADGVQMG 213
|
Length = 336 |
| >gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 22/126 (17%)
Query: 188 DLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAG-----IIVSNH----GARQ 238
DL ++ D+K + K PI VK L + + AG A I++ H GA
Sbjct: 188 DLAQLIYDLK--EINPKAPISVK--LVSGHGVGTIAAGVAKAGADIILIDGHDGGTGASP 243
Query: 239 L---DYVPA-TIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289
+ +AL EV + + R+ + DGG+R G DV KA ALGA ++IG
Sbjct: 244 KTSIKHAGLPWELALAEVHQTLVENGLRDRVSLIADGGLRTGADVAKAAALGADAVYIGT 303
Query: 290 PVVYSL 295
+ +L
Sbjct: 304 AALIAL 309
|
This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster. Length = 367 |
| >gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 196 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 241
+K L++ + I+ V+TA+ A+ + AGA G+ V G Q
Sbjct: 273 IKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQAS- 331
Query: 242 VPATIMALEEVVK-ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289
A+ V + A + +P DGG++ D+ KALALGA + +G
Sbjct: 332 ------AVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGS 374
|
Length = 495 |
| >gnl|CDD|178421 PLN02826, PLN02826, dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 35/156 (22%)
Query: 204 KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMA--------- 248
P+LVK L+ ED A +A+ G G+I+SN + D V A
Sbjct: 262 PPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGK 321
Query: 249 ---------LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS-LAAE 298
L E+ + T+G+IP+ GGV G D +K + GAS + +Y+ A E
Sbjct: 322 PLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLV-----QLYTAFAYE 376
Query: 299 GEKGVRRVLEMLREEFELAMALSGCRSLKE-ITRDH 333
G + R ++ E + G +S++E + DH
Sbjct: 377 GPALIPR----IKAELAACLERDGFKSIQEAVGADH 408
|
Length = 409 |
| >gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 49/193 (25%), Positives = 67/193 (34%), Gaps = 60/193 (31%)
Query: 196 VKWLQTITKL-PILVK-----GVLTAEDARIAVQAGAAGIIVSNH----GARQL---DYV 242
+K L+ I VK GV T A +AGA I + GA L D+
Sbjct: 294 IKDLKEANPWAKISVKLVAEHGVGTI--AAGVAKAGADVITIDGADGGTGASPLTSIDHA 351
Query: 243 --PATIMALEEVVKATQG-----RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 295
P + L E + ++ + DGG+R G DV KA ALGA + G +L
Sbjct: 352 GIP-WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTA---AL 407
Query: 296 AAEG-----------------------------EKGVRRVLE----MLREEFELAMALSG 322
A G E RV+ + E EL +A G
Sbjct: 408 VALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELREL-LAALG 466
Query: 323 CRSLKEITRDHIV 335
RSL E+ +
Sbjct: 467 KRSLSELIGRTDL 479
|
Length = 485 |
| >gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 196 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 241
+KW+ + +L ++ V+TAE AR + AGA + V+ G QL
Sbjct: 255 IKWIKKKYPELDVIAGNVVTAEAARELIDAGADAVKVGIGPGSICTTREVAGVGRPQL-- 312
Query: 242 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGR 289
A+ EV A + +PV DGG+R D+ KALA GAS + +G
Sbjct: 313 -----TAVYEVADAARKLGVPVIADGGIRYSGDIAKALAAGASAVMLGS 356
|
This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467 |
| >gnl|CDD|217344 pfam03060, NMO, Nitronate monooxygenase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 207 ILVKGVLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFL 264
++ V +A++AR A AGA ++ G +V T L V IPV
Sbjct: 139 KVIPTVSSAKEARKAEAAGADAVVAQGPEAGGHIGTFVGVTTFLLVPTVVDAVD-IPVIA 197
Query: 265 DGGVRRGTDVFKALALGASGIFIG 288
GG+ G + ALALGA G+ IG
Sbjct: 198 AGGIADGRGIAAALALGAEGVQIG 221
|
Nitronate monooxygenase (NMO), formerly referred to as 2-nitropropane dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses molecular oxygen to oxidize (anionic) alkyl nitronates and, in the case of the enzyme from Neurospora crassa, (neutral) nitroalkanes to the corresponding carbonyl compounds and nitrite. Previously classified as 2-nitropropane dioxygenase, but it is now recognized that this was the result of the slow ionization of nitroalkanes to their nitronate (anionic) forms. The enzymes from the fungus Neurospora crassa and the yeast Williopsis saturnus var. mrakii (formerly classified as Hansenula mrakii) contain non-covalently bound FMN as the cofactor. Active towards linear alkyl nitronates of lengths between 2 and 6 carbon atoms and, with lower activity, towards propyl-2-nitronate. The enzyme from N. crassa can also utilize neutral nitroalkanes, but with lower activity. One atom of oxygen is incorporated into the carbonyl group of the aldehyde product. The reaction appears to involve the formation of an enzyme-bound nitronate radical and an a-peroxynitroethane species, which then decomposes, either in the active site of the enzyme or after release, to acetaldehyde and nitrite. Length = 329 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 25/150 (16%)
Query: 204 KLPILVK---GV-----LTAEDARIAVQAGAAGIIVSNHG-ARQLDY-VPATIMALEEVV 253
+P+ VK G L E ARI AGA + V HG R Y PA ++E+
Sbjct: 136 DIPVTVKIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQGYLGPADWDYIKELK 193
Query: 254 KATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRP----------VVYSLAAEGEK- 301
+A IPV +G ++ D + L GA G+ IGR + Y E
Sbjct: 194 EAVPS-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPP 252
Query: 302 GVRRVLEMLREEFELAMALSGCRSLKEITR 331
+ VL++LRE EL + G + L+ + +
Sbjct: 253 TLAEVLDILREHLELLLEYYGKKGLRRLRK 282
|
Length = 323 |
| >gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 30 AEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAM 81
A + + F + L +D+ ID++T LG K+S P +I AM
Sbjct: 17 ALKEDVEYKKTTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLI--NAM 68
|
Length = 352 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.002
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 218 ARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275
A+ AGA+ + V HG Q PA + E+ +A IPV +G + D
Sbjct: 144 AKALEDAGASALTV--HGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDAL 199
Query: 276 KALAL-GASGIFIGR 289
+ L G G+ IGR
Sbjct: 200 RCLEQTGVDGVMIGR 214
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|188634 cd00945, Aldolase_Class_I, Class I aldolases | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 36/162 (22%)
Query: 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDV 196
V V A G I + + + + + D ++ E++
Sbjct: 66 VKVAEVEEAIDLGADEIDVVI----------------------NIGSLKEGDWEEVLEEI 103
Query: 197 KWLQTITKLPILVK-----GVLTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATI 246
+ + +K L D ARIA +AGA I S AT+
Sbjct: 104 AAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFG----GGGATV 159
Query: 247 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288
++ + +A GR+ V GG++ D A+ GA GI
Sbjct: 160 EDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201
|
Class I aldolases. The class I aldolases use an active-site lysine which stabilizes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. Length = 201 |
| >gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.004
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 204 KLPILVKGVLTAEDARIAVQAGAAGIIVS-NHGA----RQLDYV--PATIMALEEVVKAT 256
+PI+ V++AE R ++AGA I V GA R + V P LE +A
Sbjct: 266 GVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEAR 325
Query: 257 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 316
+ V+ DGGVR DV ALA GAS + +G + + G+ R +E F +
Sbjct: 326 KLGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGM 385
Query: 317 AMA 319
A
Sbjct: 386 ASK 388
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302 [Unknown function, General]. Length = 475 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 100.0 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 100.0 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 100.0 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 100.0 | |
| PLN02535 | 364 | glycolate oxidase | 100.0 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 100.0 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 100.0 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 100.0 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 100.0 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 100.0 | |
| PLN02979 | 366 | glycolate oxidase | 100.0 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 100.0 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 100.0 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 100.0 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 100.0 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 100.0 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.97 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.97 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 99.97 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.96 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.96 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.95 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 99.95 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 99.95 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 99.95 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.95 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.93 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.93 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.92 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.92 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.92 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.91 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.91 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.91 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.91 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.9 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.9 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.9 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 99.9 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.9 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.9 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 99.9 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.89 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.89 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.89 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.89 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.89 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 99.89 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 99.88 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.87 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.86 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.85 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.85 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.84 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 99.84 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.82 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 99.81 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.81 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 99.81 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.8 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 99.79 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 99.79 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 99.78 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.78 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.76 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 99.73 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 99.73 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.69 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.64 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 99.63 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 99.61 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 99.55 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 99.54 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 99.53 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 99.53 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 99.43 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.41 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.39 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 99.38 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 99.35 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 99.34 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 99.32 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 99.31 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 99.28 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 99.27 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 99.2 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 99.2 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 99.16 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 99.13 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 99.13 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 99.13 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 99.12 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 99.09 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 99.08 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 99.05 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 99.04 | |
| PLN02591 | 250 | tryptophan synthase | 99.04 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 99.03 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 99.03 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.01 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 99.0 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 99.0 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 98.97 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 98.96 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 98.95 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 98.93 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.93 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 98.9 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.89 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.88 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.86 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.84 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 98.84 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 98.82 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.81 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 98.8 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 98.79 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.78 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.77 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.77 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.76 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 98.76 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.76 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.76 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 98.72 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 98.69 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 98.69 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.68 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.68 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.68 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.68 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.66 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.65 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 98.64 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.64 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.63 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 98.63 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 98.62 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.6 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 98.59 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.57 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 98.52 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.51 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 98.5 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 98.47 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 98.47 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 98.47 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 98.46 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 98.44 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 98.44 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 98.44 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 98.43 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 98.42 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 98.41 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 98.41 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.4 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 98.4 | |
| TIGR00875 | 213 | fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ | 98.4 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.38 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 98.37 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 98.34 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.32 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 98.32 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 98.3 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.29 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 98.28 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 98.27 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 98.27 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 98.25 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.24 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 98.24 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 98.24 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 98.23 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.22 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 98.22 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 98.21 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.21 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.21 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.2 | |
| PRK01362 | 214 | putative translaldolase; Provisional | 98.19 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 98.18 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 98.18 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 98.17 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 98.16 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 98.16 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 98.16 | |
| PRK12653 | 220 | fructose-6-phosphate aldolase; Reviewed | 98.15 | |
| PRK12655 | 220 | fructose-6-phosphate aldolase; Reviewed | 98.15 | |
| PRK12656 | 222 | fructose-6-phosphate aldolase; Reviewed | 98.14 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 98.14 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 98.14 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 98.13 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 98.12 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 98.1 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 98.08 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 98.08 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 98.07 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 98.05 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 98.04 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.03 | |
| PRK12376 | 236 | putative translaldolase; Provisional | 98.02 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 98.01 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.98 | |
| PRK08005 | 210 | epimerase; Validated | 97.97 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.97 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 97.96 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 97.96 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 97.94 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.93 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 97.88 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 97.87 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 97.87 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 97.86 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 97.84 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 97.83 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 97.83 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 97.83 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.82 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.79 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.78 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 97.78 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 97.78 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 97.78 | |
| TIGR02134 | 236 | transald_staph transaldolase. This small family of | 97.76 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 97.72 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 97.72 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 97.68 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 97.66 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.65 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 97.65 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.64 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.63 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.63 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 97.63 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 97.62 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.61 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.61 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 97.56 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 97.53 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.52 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.51 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 97.51 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 97.48 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 97.47 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.46 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 97.45 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.41 | |
| PRK14057 | 254 | epimerase; Provisional | 97.41 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 97.38 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 97.38 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 97.36 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.34 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 97.32 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.3 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 97.3 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.28 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 97.28 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.27 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.22 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 97.2 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 97.19 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.19 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 97.19 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 97.18 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 97.16 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 97.15 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 97.14 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 97.14 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 97.13 | |
| PRK06852 | 304 | aldolase; Validated | 97.12 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 97.1 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 97.1 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 97.09 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.09 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 97.08 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 97.08 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 97.08 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 97.07 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 97.05 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 97.04 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 97.02 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.02 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 97.02 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.01 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 97.01 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 96.99 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 96.98 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 96.96 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 96.94 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 96.94 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 96.91 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 96.91 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 96.9 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 96.9 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 96.9 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.89 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 96.88 | |
| KOG4175 | 268 | consensus Tryptophan synthase alpha chain [Amino a | 96.87 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 96.87 | |
| PLN02591 | 250 | tryptophan synthase | 96.85 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.83 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 96.78 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 96.78 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 96.77 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 96.77 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 96.75 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 96.74 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 96.73 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 96.72 | |
| cd00439 | 252 | Transaldolase Transaldolase. Enzymes found in the | 96.71 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 96.7 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 96.69 | |
| COG0176 | 239 | MipB Transaldolase [Carbohydrate transport and met | 96.67 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 96.66 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 96.65 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 96.65 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 96.64 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 96.63 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 96.62 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 96.6 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 96.58 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 96.58 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 96.54 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 96.51 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 96.5 | |
| PF04898 | 287 | Glu_syn_central: Glutamate synthase central domain | 96.46 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 96.45 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 96.44 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 96.43 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 96.41 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 96.4 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 96.37 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 96.37 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 96.37 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 96.34 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 96.34 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 96.33 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 96.33 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 96.32 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 96.31 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 96.31 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 96.31 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 96.31 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 96.3 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 96.29 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 96.29 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 96.27 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 96.24 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 96.2 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 96.18 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 96.18 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 96.17 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 96.15 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 96.1 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 96.08 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 96.08 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 96.08 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 96.07 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 96.04 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 95.99 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 95.99 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 95.99 | |
| PTZ00411 | 333 | transaldolase-like protein; Provisional | 95.97 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 95.94 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 95.92 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 95.92 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 95.92 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 95.82 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 95.81 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 95.79 | |
| PRK12309 | 391 | transaldolase/EF-hand domain-containing protein; P | 95.77 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 95.76 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 95.75 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 95.75 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 95.75 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 95.69 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 95.67 | |
| cd00957 | 313 | Transaldolase_TalAB Transaldolases including both | 95.66 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 95.64 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 95.64 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 95.64 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 95.6 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 95.6 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 95.59 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 95.57 | |
| PF03740 | 239 | PdxJ: Pyridoxal phosphate biosynthesis protein Pdx | 95.57 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 95.56 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 95.53 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 95.53 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 95.52 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 95.45 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 95.44 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 95.44 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 95.43 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 95.36 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 95.36 | |
| cd01571 | 302 | NAPRTase_B Nicotinate phosphoribosyltransferase (N | 95.34 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 95.34 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 95.3 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 95.27 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 95.24 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 95.21 | |
| PRK05269 | 318 | transaldolase B; Provisional | 95.19 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 95.18 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 95.17 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 95.16 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 95.15 | |
| TIGR00874 | 317 | talAB transaldolase. This family includes the majo | 95.11 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 95.09 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 95.06 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 95.05 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 95.05 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 95.04 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 95.03 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 95.0 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 94.99 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 94.94 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 94.91 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 94.89 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 94.88 | |
| PRK12346 | 316 | transaldolase A; Provisional | 94.87 | |
| cd00516 | 281 | PRTase_typeII Phosphoribosyltransferase (PRTase) t | 94.84 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 94.8 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 94.79 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 94.78 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 94.77 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 94.75 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 94.72 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 94.71 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 94.71 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 94.71 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 94.68 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 94.66 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 94.64 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 94.61 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 94.61 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 94.6 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 94.51 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 94.49 | |
| PLN02979 | 366 | glycolate oxidase | 94.48 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 94.42 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 94.42 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 94.39 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 94.32 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 94.29 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 94.27 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 94.27 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 94.24 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 94.24 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 94.17 | |
| PLN02535 | 364 | glycolate oxidase | 94.14 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 94.07 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.06 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 94.06 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 94.04 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 94.04 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 93.96 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 93.95 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 93.94 | |
| PRK13305 | 218 | sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; | 93.89 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 93.89 | |
| PF03102 | 241 | NeuB: NeuB family; InterPro: IPR013132 NeuB is the | 93.89 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 93.86 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 93.79 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 93.78 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 93.73 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 93.73 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 93.68 | |
| COG3684 | 306 | LacD Tagatose-1,6-bisphosphate aldolase [Carbohydr | 93.67 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 93.66 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 93.65 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 93.64 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 93.62 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 93.6 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 93.53 | |
| COG2089 | 347 | SpsE Sialic acid synthase [Cell envelope biogenesi | 93.49 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 93.46 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 93.41 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 93.37 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 93.33 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 93.32 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 93.28 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 93.25 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 93.23 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 93.19 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 92.99 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 92.98 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 92.94 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 92.93 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 92.92 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 92.92 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 92.9 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 92.88 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 92.81 | |
| COG3836 | 255 | HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola | 92.74 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 92.66 | |
| PRK04161 | 329 | tagatose 1,6-diphosphate aldolase; Reviewed | 92.61 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 92.56 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 92.56 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 92.55 |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-85 Score=589.69 Aligned_cols=337 Identities=74% Similarity=1.129 Sum_probs=324.1
Q ss_pred CCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccccc
Q 018919 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (349)
Q Consensus 4 ~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~ 83 (349)
++|++|||+.|+++||+.+|+|+.|||+|+.|+++|.++|.+|.|+||+|++++.+|+||+++|.+++.||++||++++.
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 84 l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
+.||+||.+.+++|.++|++|++|+++++++|||.+..| +..|||||.++|++.+.++++|++++|++++.+|+|+|..
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999986 8999999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCcCcccccCC--------------------CCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHH
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQG--------------------LDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIA 221 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~--------------------~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a 221 (349)
|+|+.|++|.|..|+.+.++++.+ +.|+.+ |++|+|+|+.|++||++|++++.|||+.|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 999999999999998776665532 678999 99999999999999999999999999999
Q ss_pred HHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHH
Q 018919 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 301 (349)
Q Consensus 222 ~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~ 301 (349)
.++|+++|+||||||||+|..|+++++|+|+.+++.+++||+.|||||+|.||+|||++||.+|.+|||++|+++++|+.
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~ 320 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEA 320 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceecccCC
Q 018919 302 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 340 (349)
Q Consensus 302 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~ 340 (349)
||+++++.|++|++..|++.||++++|+++..+....+.
T Consensus 321 GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~~~s~ 359 (363)
T KOG0538|consen 321 GVKKVLDILRDEFELTMALSGCRSVKEITRNHVLTEESR 359 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCchhhhCccceeechhh
Confidence 999999999999999999999999999999865554443
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-78 Score=577.94 Aligned_cols=344 Identities=89% Similarity=1.302 Sum_probs=321.4
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccc
Q 018919 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (349)
Q Consensus 3 ~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~ 82 (349)
.++|++|||+.||++||+.+|+|+.||++||.|+++|+.+|++|.|+||+|++++++||+|++||++++.||++||++++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 83 ~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
++.||++|.++|++|+++|+++++|+.+++++|||++..+++.|||||..+|++.+.+++++++++|++++++|+|+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999887667899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCcCccccc--------------------CCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHH
Q 018919 163 GRREADIKNRFTLPPFLTLKNF--------------------QGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIA 221 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~--------------------~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a 221 (349)
|+|++|++++|..|..+..++. ....++.+ |++|+|+|+.|++||++|++.++++|++|
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 9999999999988755433221 01457778 99999999999999999999999999999
Q ss_pred HHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHH
Q 018919 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 301 (349)
Q Consensus 222 ~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~ 301 (349)
.++|+|+|+||||||||+++.++++++|+++++++.+++|||++|||+++.|++|||++||++|+|||||+|+++..|++
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~ 321 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceecccCCCCCCCCCC
Q 018919 302 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLPRPVPR 348 (349)
Q Consensus 302 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~~~~~~~~ 348 (349)
|+.++++.+++|++..|.++|+++++|+++..+.... ..|+|--+
T Consensus 322 gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~--~~~~~~~~ 366 (367)
T PLN02493 322 GVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEW--DTPRPSAR 366 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHH--hccCcccC
Confidence 9999999999999999999999999999998876554 44444333
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-76 Score=565.29 Aligned_cols=339 Identities=39% Similarity=0.605 Sum_probs=316.9
Q ss_pred CCCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccc
Q 018919 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (349)
Q Consensus 2 ~~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~ 81 (349)
..++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|.|+||+|++++++||+|++||++++.||++|||++
T Consensus 11 ~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~ 90 (367)
T TIGR02708 11 VDFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAA 90 (367)
T ss_pred cCCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhC-CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCC
Q 018919 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (349)
Q Consensus 82 ~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~-~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p 160 (349)
+.+.||++|.++|++|.++|+++++|+.++.++|||.+.. +++.|||||..+|++.+.++++|++++|+++|++|+|+|
T Consensus 91 ~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p 170 (367)
T TIGR02708 91 HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADAT 170 (367)
T ss_pred hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 9999999999999999999999999999999999999874 478999999999999999999999999999999999999
Q ss_pred CCCchhHHhhhhcCCCCcCcc-------------cccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCC
Q 018919 161 RLGRREADIKNRFTLPPFLTL-------------KNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 226 (349)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~-------------~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~ 226 (349)
+.|+|++|.|++|..|..... .......++.+ |++|+|+++.+++||++|++.++++|++|.++|+
T Consensus 171 ~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gv 250 (367)
T TIGR02708 171 VGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGA 250 (367)
T ss_pred CCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCc
Confidence 999999999999987743210 00111235667 9999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHH
Q 018919 227 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 306 (349)
Q Consensus 227 d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~ 306 (349)
|+|+||||||||++.++++++.|+++++++++++|||++|||+++.|++|+|++||++|+||||++|+++..|++|+.++
T Consensus 251 d~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~ 330 (367)
T TIGR02708 251 SGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQV 330 (367)
T ss_pred CEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999998866899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhcccceecccCC
Q 018919 307 LEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 340 (349)
Q Consensus 307 l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~ 340 (349)
++.+++||+..|.++|+++++||++..+...+..
T Consensus 331 l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~~~~ 364 (367)
T TIGR02708 331 FEYLNKELKRVMQLTGTQTIEDVKGFDLRHNPYG 364 (367)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHhCccccccCCCC
Confidence 9999999999999999999999999988665544
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-76 Score=563.62 Aligned_cols=334 Identities=39% Similarity=0.636 Sum_probs=313.3
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccc
Q 018919 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (349)
Q Consensus 3 ~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~ 82 (349)
.++|++|||+.||++||+.+|+|+.||++||.|+++|+.+|++|.|+||+|++++++||+|++||++++.||++||++++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 83 ~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
.+.||++|.++|++|++.|+++++|+.++.++|||.+..+++.|||||.++|++.+.++++|++++|+++|++|+|+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999887667899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCc--------C----------------cccccC-----------------CCCCCch-HHHHHHHH
Q 018919 163 GRREADIKNRFTLPPF--------L----------------TLKNFQ-----------------GLDLGKM-DEDVKWLQ 200 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~--------~----------------~~~~~~-----------------~~~~~~~-~~~i~~i~ 200 (349)
|+|++|.|++|..|.. . ...+.. ...++.+ |++|+|++
T Consensus 162 G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr 241 (381)
T PRK11197 162 GARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIR 241 (381)
T ss_pred CCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHHH
Confidence 9999999999987731 0 001100 1346778 99999999
Q ss_pred HhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh
Q 018919 201 TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 201 ~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~ 280 (349)
+.|++||++|++.+.++|+.+.++|+|+|+|+|||||+++..+++.+.|.++++.+..++|||++|||+++.|++|+|++
T Consensus 242 ~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaL 321 (381)
T PRK11197 242 DFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIAL 321 (381)
T ss_pred HhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999887668999999999999999999999
Q ss_pred CCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceec
Q 018919 281 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 336 (349)
Q Consensus 281 GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~ 336 (349)
||++|++||+|+++++..|++||.++++.+++||+..|.++|+++++|+++..+..
T Consensus 322 GA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~~ 377 (381)
T PRK11197 322 GADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLVQ 377 (381)
T ss_pred CcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhcc
Confidence 99999999999999999999999999999999999999999999999999887643
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-75 Score=560.25 Aligned_cols=341 Identities=63% Similarity=0.982 Sum_probs=318.4
Q ss_pred CCCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccc
Q 018919 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (349)
Q Consensus 2 ~~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~ 81 (349)
++++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|.|+||+|++++++||+|++||++++.||++||+++
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCC
Q 018919 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (349)
Q Consensus 82 ~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~ 161 (349)
+.+.||++|.++|++|+++|+++++|+.+++++|||++..+++.|||||..+|++.+.++++|++++|+++|++|+|+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999988766789999999999999999999999999999999999999
Q ss_pred CCchhHHhhhhcCCCCcCccc----------cc-------CCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHH
Q 018919 162 LGRREADIKNRFTLPPFLTLK----------NF-------QGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQ 223 (349)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~----------~~-------~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~ 223 (349)
.|+|++|+|++|..|...... .. ....++.+ |++|+|+|+.+++||++|++.++++|+.+.+
T Consensus 163 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~ 242 (364)
T PLN02535 163 LGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVE 242 (364)
T ss_pred CCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHh
Confidence 999999999999877210000 00 01357778 9999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHH
Q 018919 224 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 303 (349)
Q Consensus 224 ~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv 303 (349)
+|+|+|+++|||||++++++++++.|+++++++..++|||++|||+++.|++|+|++||++|+|||+|+++++..|++|+
T Consensus 243 ~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~~gv 322 (364)
T PLN02535 243 VGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGEDGV 322 (364)
T ss_pred cCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccHHHH
Confidence 99999999999999999999999999999998866799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhcccceecccCCCC
Q 018919 304 RRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASL 342 (349)
Q Consensus 304 ~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~~ 342 (349)
.++++.+.+||+..|.++|+.+++|++++.++....+.|
T Consensus 323 ~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~~~ 361 (364)
T PLN02535 323 RKVIEMLKDELEITMALSGCPSVKDITRSHVRTERERLQ 361 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhhhh
Confidence 999999999999999999999999999988866555544
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-74 Score=557.41 Aligned_cols=330 Identities=42% Similarity=0.667 Sum_probs=309.6
Q ss_pred CCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccccc
Q 018919 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (349)
Q Consensus 4 ~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~ 83 (349)
++|++|||+.||++||+.+|+|+.||++||.|+++|+.+|++|.|+||+|++++++||+|+|||++++.||++||++++.
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 84 l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
+.||++|.++|++|.++|+++++|+++++++|||++..+ ++.|||||..+|++.+.++++|++++|+++|++|+|+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999999999999999988754 7899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCc--Ccc------------------cccC--------------CCCCCch-HHHHHHHHHhcCCcE
Q 018919 163 GRREADIKNRFTLPPF--LTL------------------KNFQ--------------GLDLGKM-DEDVKWLQTITKLPI 207 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~--~~~------------------~~~~--------------~~~~~~~-~~~i~~i~~~~~~pv 207 (349)
|+|++|.|++|. |.. .+. .+.. ...++.+ |++|+|+++.|++||
T Consensus 178 g~Rerd~r~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGYL-PFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCCC-CCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 999999999983 421 110 0000 0246778 999999999999999
Q ss_pred EEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 208 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 208 ~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
++|++.+.++|+.+.++|+|+|+|+|||||+++++++++++|+++++++++++||+++|||+++.|++|||++||++|++
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred chHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 288 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 288 g~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
||||+|+++..|++||+++++.+++||+..|.++|+++++||+++.+
T Consensus 337 Gr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~~ 383 (383)
T cd03332 337 GRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDAL 383 (383)
T ss_pred cHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCcccC
Confidence 99999999999999999999999999999999999999999988753
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-74 Score=552.69 Aligned_cols=321 Identities=45% Similarity=0.720 Sum_probs=302.7
Q ss_pred HHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccccccCC
Q 018919 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (349)
Q Consensus 8 ~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~ 87 (349)
+|||+.||++||+.+|+|++||++||.|+++|+.+|++|.|+||+|++++++||+|++||++++.||++||++.+++.||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhH
Q 018919 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (349)
Q Consensus 88 ~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~ 167 (349)
++|.++|++|++.|+++++|+++++++|||.+..+++.|||||.. +++.+.++++|++++|+++|++|+|+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999987667899999996 6899999999999999999999999999999999
Q ss_pred HhhhhcCCCCcCcccc------------------------cC---------------CCCCCch-HHHHHHHHHhcCCcE
Q 018919 168 DIKNRFTLPPFLTLKN------------------------FQ---------------GLDLGKM-DEDVKWLQTITKLPI 207 (349)
Q Consensus 168 d~~~~~~~p~~~~~~~------------------------~~---------------~~~~~~~-~~~i~~i~~~~~~pv 207 (349)
|.|++|.+|.+++.++ .. +..|+.+ |++|+|||+.++.|+
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 9999998775332111 00 0346778 999999999999999
Q ss_pred EEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 208 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 208 ~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
++|++.++++|++|.++|+|+|+||||||||+++.+++++.|+++++.+ ++|||++|||+++.|++|||++||++|++
T Consensus 240 iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 240 LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999999999999999999887 59999999999999999999999999999
Q ss_pred chHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 018919 288 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 331 (349)
Q Consensus 288 g~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~ 331 (349)
||||+|+++..|++||+++++.+++||+..|.++|+++++|+++
T Consensus 318 Gr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 361 (361)
T cd04736 318 GRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361 (361)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCc
Confidence 99999999999999999999999999999999999999999863
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-74 Score=551.61 Aligned_cols=332 Identities=44% Similarity=0.725 Sum_probs=312.1
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccc
Q 018919 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (349)
Q Consensus 3 ~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~ 82 (349)
+++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|.|+||+|++++++||+|++||++++.||++|||+++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhC-CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCC
Q 018919 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (349)
Q Consensus 83 ~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~-~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~ 161 (349)
.+.||++|.++|++|+++|+++++|+.++.++||+.+.. +++.|||+|.++|++.+.+++++++++|+++|++|+|+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999876 4789999999999999999999999999999999999999
Q ss_pred CCchhHHhhhhcCCCCcCcccccC--------------CCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCC
Q 018919 162 LGRREADIKNRFTLPPFLTLKNFQ--------------GLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 226 (349)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~--------------~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~ 226 (349)
.|+|++|++++|..|.+....... ...++.+ |++|+|+++.+++||++|++.++++|+.+.++|+
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~ 243 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGA 243 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCC
Confidence 999999999999888433221100 0234567 9999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHH
Q 018919 227 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 306 (349)
Q Consensus 227 d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~ 306 (349)
|+|+|+||||+++++++++++.|+++++++++++|||++|||+++.|++|+|++||++|++||+++|+++..|++||.++
T Consensus 244 d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~~gv~~~ 323 (351)
T cd04737 244 DGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGVASV 323 (351)
T ss_pred CEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchHHHHHHH
Confidence 99999999999999999999999999998866899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 307 LEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 307 l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
++.+++||+.+|.++|+++++|+++..|
T Consensus 324 l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 324 LEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 9999999999999999999999987653
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-72 Score=537.38 Aligned_cols=322 Identities=52% Similarity=0.785 Sum_probs=293.1
Q ss_pred HHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHH
Q 018919 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (349)
Q Consensus 14 a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~l 93 (349)
||++||+..|+|++||+++|.|+++|+++|++|.|+||+|++++++||+|+|||++++.||++|||+++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhc
Q 018919 94 ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (349)
Q Consensus 94 a~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~ 173 (349)
|++|+++|+++++|+.++.++|++.+..+++.|+|||.+.|++.+.+++++++++|++++.+|+|+|..++|++|.|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999998877889999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcccccC---------------------------------CCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHH
Q 018919 174 TLPPFLTLKNFQ---------------------------------GLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDAR 219 (349)
Q Consensus 174 ~~p~~~~~~~~~---------------------------------~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~ 219 (349)
.+|.+++.++.. ...++.+ |+.|+++++.|++||++|++.++++|+
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 888764322210 1246778 999999999999999999999999999
Q ss_pred HHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcC
Q 018919 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 299 (349)
Q Consensus 220 ~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G 299 (349)
+|.++|+|+|+||||||||+|+++++++.|+++++++++++|||+|||||+|.|++|+|++||++|++||||+|+++..|
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g 320 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGG 320 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhh
Confidence 99999999999999999999999999999999999997789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 300 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 300 ~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
++||.++++.|++||+..|.++|+++++||+++.++
T Consensus 321 ~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~~ 356 (356)
T PF01070_consen 321 EEGVERVLEILKEELKRAMFLLGARSIAELRRSLLR 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhcC
Confidence 999999999999999999999999999999998763
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-71 Score=529.31 Aligned_cols=325 Identities=47% Similarity=0.746 Sum_probs=303.6
Q ss_pred HHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccccccCC
Q 018919 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (349)
Q Consensus 8 ~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~ 87 (349)
+|||+.||++||+.+|+|+.||++||+|+++|+.+|++|.|+||+|++++++||+|+|||++++.||++|||+++++.||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhh-CC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCch
Q 018919 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (349)
Q Consensus 88 ~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~-~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r 165 (349)
++|.++|++|.+.|+++++|++++.++|+|.+. .| .+.|||||.++|++.+.+++++++++|+++|++|+|.|..|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999998876 34 6899999999999999999999999999999999999999999
Q ss_pred hHHhhhhcCCCCcCcccc-------------cCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEE
Q 018919 166 EADIKNRFTLPPFLTLKN-------------FQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIV 231 (349)
Q Consensus 166 ~~d~~~~~~~p~~~~~~~-------------~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v 231 (349)
++|++++|..|..++.++ .....++.. |+.|+++++.+++||++|++.++++|+.+.++|+|+|+|
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~v 240 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVL 240 (344)
T ss_pred hhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEE
Confidence 999999998876443332 111345666 999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHH
Q 018919 232 SNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLE 308 (349)
Q Consensus 232 ~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~ 308 (349)
+||||++++..+++++.|.++++.+ ++++|||++|||+++.|++|+|++||++|+|||+|++++.+.|++||.++++
T Consensus 241 snhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~gv~~~l~ 320 (344)
T cd02922 241 SNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEEGVEKAIQ 320 (344)
T ss_pred ECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHHHHHHHHH
Confidence 9999999998888999999998853 3479999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhhhccc
Q 018919 309 MLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 309 ~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
.+++||+.+|.++|+++++|++++
T Consensus 321 ~l~~EL~~~m~l~G~~~i~~l~~~ 344 (344)
T cd02922 321 ILKDEIETTMRLLGVTSLDQLGPS 344 (344)
T ss_pred HHHHHHHHHHHHhCCCCHHHhCcC
Confidence 999999999999999999999753
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-65 Score=480.82 Aligned_cols=297 Identities=88% Similarity=1.274 Sum_probs=277.6
Q ss_pred cccccccccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCc
Q 018919 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGI 124 (349)
Q Consensus 45 ~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~ 124 (349)
-|.|+||+|++++++||+|++||++++.||++||++++.+.||++|.++|++|+++|+++++|+.++.++|||++..+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998876678
Q ss_pred eEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc--------------------
Q 018919 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF-------------------- 184 (349)
Q Consensus 125 ~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~-------------------- 184 (349)
.|||+|..+|++.+.++++|++++|++++++|+|+|+.|+|++|++|+|..|...+.++.
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999988865443322
Q ss_pred CCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEE
Q 018919 185 QGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 263 (349)
Q Consensus 185 ~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 263 (349)
.+..++.+ |++|+|+|+.|++||++|++.+.++|++|.++|+|+|+|+||||||++++++++++|+++++++.+++|||
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 01456778 99999999999999999999999999999999999999999999999999999999999999887789999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceecccCCC
Q 018919 264 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 341 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~ 341 (349)
++|||+++.|++|||++||++|++|||++++++..|++|+.++++.+++||+..|.++|+++++|+.+..+......+
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~~~ 360 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTP 360 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998875554333
|
|
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=454.63 Aligned_cols=329 Identities=46% Similarity=0.675 Sum_probs=307.4
Q ss_pred hHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccccccC
Q 018919 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86 (349)
Q Consensus 7 ~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~ 86 (349)
+.|+++.|++++| +.|+|+.+|+++|.|.++|+++|+++.|+|++|.+++++|++|+++|++++.||++|||+++++.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3589999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchh
Q 018919 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~ 166 (349)
++++..-+++|..+|.+++.++.+++++|++.+..+ +|+|...+++...+.++++.++|++.+.+|+|.|..+.|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999998876544 9999988999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCcCcccccC------------------------CCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHH
Q 018919 167 ADIKNRFTLPPFLTLKNFQ------------------------GLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIA 221 (349)
Q Consensus 167 ~d~~~~~~~p~~~~~~~~~------------------------~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a 221 (349)
+|.++.+..|......+.. .+.+|.. |+++.++++.|..|+++|++.+++|+..+
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a 235 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhh
Confidence 9999998777443332210 1467778 99999999999999999999999999999
Q ss_pred HHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHH
Q 018919 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 301 (349)
Q Consensus 222 ~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~ 301 (349)
.+.|+|+|.++||||||+|+|++++++|++++++++++++|++|||||+|.|++|||++||++|++||||+++++..|++
T Consensus 236 ~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~ 315 (360)
T COG1304 236 GGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEA 315 (360)
T ss_pred ccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999878999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceecccCC
Q 018919 302 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 340 (349)
Q Consensus 302 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~ 340 (349)
||.++++.+++||+..|.++|+++|+||++..++.....
T Consensus 316 GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~~~ 354 (360)
T COG1304 316 GVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSGRL 354 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeecccc
Confidence 999999999999999999999999999999988765443
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-58 Score=436.91 Aligned_cols=299 Identities=60% Similarity=0.909 Sum_probs=282.0
Q ss_pred HHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccccccCC
Q 018919 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (349)
Q Consensus 8 ~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~ 87 (349)
+||++.|+++||+..|.|+.+|++++.|+++|...|++|+|+||+|++++++||+|+++|++++.||++|||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred hhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhH
Q 018919 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (349)
Q Consensus 88 ~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~ 167 (349)
+++.+++++|+++|+++++++++..+++++.+..++++|+|+|...+++.+.+.++++++.|+++|++|+|||..+.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999888899999887778899999987788989999999999999999999999864322
Q ss_pred HhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHH
Q 018919 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIM 247 (349)
Q Consensus 168 d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~ 247 (349)
..|+.++++++.+++||++|++.++++|+.+.++|+|+|+++||||++.++++++++
T Consensus 159 -----------------------~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~ 215 (299)
T cd02809 159 -----------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATID 215 (299)
T ss_pred -----------------------CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHH
Confidence 117899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChh
Q 018919 248 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLK 327 (349)
Q Consensus 248 ~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~ 327 (349)
.+.++++.+++++|||++|||+++.|++|+|++|||+|++||||++++...|.+++.++++.+++||+.+|..+|+++++
T Consensus 216 ~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G~~~i~ 295 (299)
T cd02809 216 ALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLA 295 (299)
T ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 99999998855799999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred hhcc
Q 018919 328 EITR 331 (349)
Q Consensus 328 ~l~~ 331 (349)
|+++
T Consensus 296 ~l~~ 299 (299)
T cd02809 296 DLDP 299 (299)
T ss_pred HhCc
Confidence 9963
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=305.59 Aligned_cols=271 Identities=27% Similarity=0.355 Sum_probs=216.6
Q ss_pred HHhhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCC--C--
Q 018919 39 NRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--S-- 112 (349)
Q Consensus 39 n~~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~--~-- 112 (349)
+...||+|.|+|+.|+ +.+++||+|+|+|++++.||++|||+|++....+.+..+|++|+++|+++++++.+. .
T Consensus 18 ~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~ 97 (326)
T cd02811 18 GSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDP 97 (326)
T ss_pred CCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccCh
Confidence 5567999999999998 789999999999999999999999998754344457899999999999999988742 1
Q ss_pred ----CHHHHHhhCC-CceEEEEeecCChh-HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCC
Q 018919 113 ----SVEEVASTGP-GIRFFQLYVYKDRN-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (349)
Q Consensus 113 ----~~e~i~~~~~-~~~~~Ql~~~~~~~-~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (349)
+++.+++..+ .+++.+++...... ...+..+.++..+++++++|++++.. ...|.
T Consensus 98 e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~----------~~~~~--------- 158 (326)
T cd02811 98 ELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQE----------AVQPE--------- 158 (326)
T ss_pred hhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHh----------hcCCC---------
Confidence 2233455555 66666665533111 12223334455689999999976421 11121
Q ss_pred CCCCch---HHHHHHHHHhcCCcEEEEEe---cCHHHHHHHHHcCCCEEEEecCCCC---------C-----------CC
Q 018919 187 LDLGKM---DEDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGAR---------Q-----------LD 240 (349)
Q Consensus 187 ~~~~~~---~~~i~~i~~~~~~pv~vK~v---~~~~~a~~a~~~G~d~I~v~~~gg~---------~-----------~~ 240 (349)
.+.++ .+.|+++++.+++||++|.+ .+.++|+.+.++|+|+|+++++||+ + .+
T Consensus 159 -~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~ 237 (326)
T cd02811 159 -GDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFAD 237 (326)
T ss_pred -CCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCccccccccccccccccccccccc
Confidence 12233 37799999999999999998 7899999999999999999999884 1 12
Q ss_pred CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 018919 241 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMAL 320 (349)
Q Consensus 241 ~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~ 320 (349)
++.++...+.++++++. ++|||++|||+++.|++|+|++|||+|++||+|++++.. |.+++.++++.+.+||+.+|.+
T Consensus 238 ~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~m~~ 315 (326)
T cd02811 238 WGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTAMFL 315 (326)
T ss_pred ccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888764 799999999999999999999999999999999998776 9999999999999999999999
Q ss_pred cCCCChhhhcc
Q 018919 321 SGCRSLKEITR 331 (349)
Q Consensus 321 ~G~~~i~~l~~ 331 (349)
+|+++++|+++
T Consensus 316 ~G~~si~el~~ 326 (326)
T cd02811 316 TGAKNLAELKQ 326 (326)
T ss_pred hCCCCHHHhcC
Confidence 99999999963
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=307.11 Aligned_cols=277 Identities=25% Similarity=0.349 Sum_probs=224.8
Q ss_pred hhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCC--C----
Q 018919 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--S---- 112 (349)
Q Consensus 41 ~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~--~---- 112 (349)
..||+|+|+|+.|. +.+++||+|+|+|.+++.||+++||+|++-...+.+.+|+++|+++|+++++|+++. .
T Consensus 28 ~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~~ 107 (352)
T PRK05437 28 TGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPEL 107 (352)
T ss_pred CChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChhh
Confidence 46999999999997 788999999999999999999999998763333456899999999999999998752 1
Q ss_pred --CHHHHHhhCC-CceEEEEeecCChhHH-HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCC
Q 018919 113 --SVEEVASTGP-GIRFFQLYVYKDRNVV-AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (349)
Q Consensus 113 --~~e~i~~~~~-~~~~~Ql~~~~~~~~~-~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~ 188 (349)
+.+.+++..| .+++.+|+........ .+..+.++..++++++++++++.. ...|. .
T Consensus 108 ~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe----------~~~p~----------g 167 (352)
T PRK05437 108 ADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQE----------LVQPE----------G 167 (352)
T ss_pred HHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchh----------hcCCC----------C
Confidence 2223455555 6677777664332332 233444555689999999987531 11121 1
Q ss_pred CCch---HHHHHHHHHhcCCcEEEEEe---cCHHHHHHHHHcCCCEEEEecCCCC---------C---------CCCchh
Q 018919 189 LGKM---DEDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGAR---------Q---------LDYVPA 244 (349)
Q Consensus 189 ~~~~---~~~i~~i~~~~~~pv~vK~v---~~~~~a~~a~~~G~d~I~v~~~gg~---------~---------~~~~~~ 244 (349)
+.++ .+.++++++.+++||++|.+ .+.++|+.+.++|+|+|+|+|+||+ . .+++.+
T Consensus 168 ~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~p 247 (352)
T PRK05437 168 DRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIP 247 (352)
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCC
Confidence 2233 37799999999999999998 7899999999999999999999873 2 135778
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 245 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 245 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
+.+.|.++++.+ .++|||++|||+++.|+.|+|++|||+|++||+|++++...|.+++.++++.+.+||+.+|..+|++
T Consensus 248 t~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~ 326 (352)
T PRK05437 248 TAQSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAK 326 (352)
T ss_pred HHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 889999998874 3799999999999999999999999999999999999888899999999999999999999999999
Q ss_pred Chhhhcccceeccc
Q 018919 325 SLKEITRDHIVTEW 338 (349)
Q Consensus 325 ~i~~l~~~~l~~~~ 338 (349)
+++||++..+...+
T Consensus 327 ~i~eL~~~~~~~~~ 340 (352)
T PRK05437 327 NIAELRKVPLVLSG 340 (352)
T ss_pred CHHHhCCCCEEecH
Confidence 99999988876543
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=296.79 Aligned_cols=275 Identities=25% Similarity=0.345 Sum_probs=216.9
Q ss_pred hhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC------
Q 018919 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------ 112 (349)
Q Consensus 41 ~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~------ 112 (349)
..||+|+|+|..|. +.+++||||+|+|++++.||+++||+|++......+..++++|++.|+++++++.+..
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~ 100 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET 100 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh
Confidence 35999999999996 6789999999999999999999999886532334467999999999999999877521
Q ss_pred --CHHHHHhhCC-CceEEEEeecCChhH-HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCC
Q 018919 113 --SVEEVASTGP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (349)
Q Consensus 113 --~~e~i~~~~~-~~~~~Ql~~~~~~~~-~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~ 188 (349)
+.+.+++..+ .+++.+++.....+. ..+..+.++..+++++++|++++.. ...|. .
T Consensus 101 ~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~----------~~~p~----------g 160 (333)
T TIGR02151 101 ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQE----------LVQPE----------G 160 (333)
T ss_pred HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccccc----------ccCCC----------C
Confidence 1223444345 566666654322111 3334444455689999999987531 11122 1
Q ss_pred CCch--H-HHHHHHHHhcCCcEEEEEe---cCHHHHHHHHHcCCCEEEEecCCCCC------------------CCCchh
Q 018919 189 LGKM--D-EDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ------------------LDYVPA 244 (349)
Q Consensus 189 ~~~~--~-~~i~~i~~~~~~pv~vK~v---~~~~~a~~a~~~G~d~I~v~~~gg~~------------------~~~~~~ 244 (349)
+..| | +.++++++.+++||++|.+ .+.+.|+.+.++|+|+|+++++||+. .+++.+
T Consensus 161 ~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~ 240 (333)
T TIGR02151 161 DRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIP 240 (333)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHh
Confidence 3333 3 7799999999999999998 78999999999999999999988753 123566
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 245 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 245 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
+.+.+.++++ +..++|||++|||+++.|+.|+|++|||+|++||+|+..+...|++++.++++.+.+||+.+|.++|++
T Consensus 241 t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~ 319 (333)
T TIGR02151 241 TAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAK 319 (333)
T ss_pred HHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7778888776 223799999999999999999999999999999999998777899999999999999999999999999
Q ss_pred Chhhhcccceec
Q 018919 325 SLKEITRDHIVT 336 (349)
Q Consensus 325 ~i~~l~~~~l~~ 336 (349)
+++||++..+..
T Consensus 320 ~i~el~~~~~~~ 331 (333)
T TIGR02151 320 TIAELKKVPLVI 331 (333)
T ss_pred CHHHHccCCeEe
Confidence 999999887643
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=242.86 Aligned_cols=253 Identities=19% Similarity=0.246 Sum_probs=197.3
Q ss_pred hcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH-
Q 018919 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (349)
Q Consensus 42 ~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~- 118 (349)
.||++.|+|..++ +++++|++|+|+|++++.||++++|.. ..|..||+.|++.|...++.-+ ++|+..
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~t------~iN~~LA~~a~~~G~~~~~~k~---~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQT------IIDEKIAEWLAENGYFYIMHRF---DPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEecccc------hhHHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 5999999999886 567999999999999999999999942 5688999999999999888653 455533
Q ss_pred ---hhCCCceEEEEeecCChhHHHHHHHHHHHcCC--CEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-
Q 018919 119 ---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGF--KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM- 192 (349)
Q Consensus 119 ---~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~--~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~- 192 (349)
+.++...++.+-...+++ ..+.++.+.++|+ ++|.|+...+ +...
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~-~~~~~~~Lv~ag~~~d~i~iD~a~g----------------------------h~~~~ 127 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDD-EYDFVDQLAAEGLTPEYITIDIAHG----------------------------HSDSV 127 (326)
T ss_pred HHHhccccccEEEEEecCCHH-HHHHHHHHHhcCCCCCEEEEECCCC----------------------------chHHH
Confidence 333432345544433333 3456667777855 9887654322 1222
Q ss_pred HHHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC------Cchh--hHHHHHHHHHHhcCCCcEE
Q 018919 193 DEDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD------YVPA--TIMALEEVVKATQGRIPVF 263 (349)
Q Consensus 193 ~~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~------~~~~--~~~~l~~i~~~~~~~ipvi 263 (349)
.+.|+++|+.++ .||++|.+.+.++++.+.++|+|+|.++++||++.. .+.+ .+..+.++++.+ ++|||
T Consensus 128 ~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~--~ipVI 205 (326)
T PRK05458 128 INMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPII 205 (326)
T ss_pred HHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc--CCCEE
Confidence 577999999995 889988899999999999999999999999996521 2345 455688888876 79999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHh---h-------cCHH-------HHHHH
Q 018919 264 LDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLA---A-------EGEK-------GVRRV 306 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~---~-------~G~~-------gv~~~ 306 (349)
++|||+++.|++|||++||++||+|++|+ ++.. . .|.+ .+.++
T Consensus 206 AdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~ 285 (326)
T PRK05458 206 ADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDT 285 (326)
T ss_pred EeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhccccccccCCceEEecccCCHHHH
Confidence 99999999999999999999999999997 1110 1 2323 47889
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 307 LEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 307 l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
+..+..+|+..|.++|+++++||++..+
T Consensus 286 l~~l~~gLr~~m~~~Ga~~i~el~~~~~ 313 (326)
T PRK05458 286 LTEMEQDLQSSISYAGGRDLDAIRKVDY 313 (326)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHhcCCE
Confidence 9999999999999999999999996543
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=242.98 Aligned_cols=255 Identities=20% Similarity=0.236 Sum_probs=195.2
Q ss_pred hhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|..++ +++++|++|+|+|++++.||++++|.. ..|..||++|++.|...++..+ ++|+..
T Consensus 2 ~~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~t------~in~~LA~~a~~~G~~~i~hK~---~~E~~~ 72 (321)
T TIGR01306 2 FDYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQT------IIDEKLAEQLAENGYFYIMHRF---DEESRI 72 (321)
T ss_pred CCcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccch------hhhHHHHHHHHHcCCEEEEecC---CHHHHH
Confidence 37999999999886 467999999999999999999999942 5688999999999999998763 455533
Q ss_pred ----hhCCCceEEEEeecCChhHHHHHHHHHHHcC--CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch
Q 018919 119 ----STGPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (349)
Q Consensus 119 ----~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G--~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (349)
+.++....+.+-....++. .+.++.+.++| ++.++++. .+ .+...
T Consensus 73 sfvrk~k~~~L~v~~SvG~t~e~-~~r~~~lv~a~~~~d~i~~D~--ah--------------------------g~s~~ 123 (321)
T TIGR01306 73 PFIKDMQERGLFASISVGVKACE-YEFVTQLAEEALTPEYITIDI--AH--------------------------GHSNS 123 (321)
T ss_pred HHHHhccccccEEEEEcCCCHHH-HHHHHHHHhcCCCCCEEEEeC--cc--------------------------CchHH
Confidence 3333222333333333332 35566667777 58777544 21 12333
Q ss_pred -HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEecCCCCCC--------CCchhhHHHHHHHHHHhcCCCcE
Q 018919 193 -DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--------DYVPATIMALEEVVKATQGRIPV 262 (349)
Q Consensus 193 -~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~~gg~~~--------~~~~~~~~~l~~i~~~~~~~ipv 262 (349)
++.++++|+.++.|+++|+ +.+.++|+.+.++|||+|.|++++|+.. ..+.+.+.++.++++++ ++||
T Consensus 124 ~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~--~~pV 201 (321)
T TIGR01306 124 VINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPI 201 (321)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhc--CCeE
Confidence 7889999999988855555 9999999999999999999998777532 22234678899998877 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh---cC-------H-------HHHHH
Q 018919 263 FLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA---EG-------E-------KGVRR 305 (349)
Q Consensus 263 ia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~---~G-------~-------~gv~~ 305 (349)
|++|||+++.|++|||++|||+||+|++|- ++... .| . -.+.+
T Consensus 202 IadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eg~~~~v~~~g~~~~ 281 (321)
T TIGR01306 202 IADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGEHKNVEGKKMFVEHKGSLSD 281 (321)
T ss_pred EEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccccccccceEEEeccCCCHHH
Confidence 999999999999999999999999999882 22210 01 0 12788
Q ss_pred HHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 306 VLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 306 ~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
++..+...|+..|.++|+++++||++..+.
T Consensus 282 ~~~~~~~glr~~~~~~G~~~l~~~~~~~~~ 311 (321)
T TIGR01306 282 TLIEMQQDLQSSISYAGGKDLDSLRTVDYV 311 (321)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHhhCCEE
Confidence 999999999999999999999999976554
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=237.36 Aligned_cols=255 Identities=22% Similarity=0.271 Sum_probs=196.1
Q ss_pred hhcccccccccc--cCCCCCCCcceeEcCe-----ecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCC
Q 018919 41 NAFSRILFRPRI--LIDVSKIDMNTTVLGF-----KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113 (349)
Q Consensus 41 ~~~~~~~l~p~~--l~~~~~~d~s~~l~g~-----~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~ 113 (349)
.+||++.|+|+. +.+.+++|++++|..+ .+..||+.|.|... ++..||.+.++.|..+++.-+ .+
T Consensus 8 l~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv------~~~~mA~~la~~g~~~~iHk~--~~ 79 (343)
T TIGR01305 8 LDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTV------GTFEMAAALSQHSIFTAIHKH--YS 79 (343)
T ss_pred CCccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcc------cCHHHHHHHHHCCCeEEEeeC--CC
Confidence 479999999974 4567899999999744 78999999999764 477999999999999999653 45
Q ss_pred HHHHHh----hCCC-ceEEEEeecCChhHHHHHHHHHHHc--CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCC
Q 018919 114 VEEVAS----TGPG-IRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (349)
Q Consensus 114 ~e~i~~----~~~~-~~~~Ql~~~~~~~~~~~~~~~~~~~--G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (349)
+|+..+ ..+. ...+-+... -.+...+.++.+.++ ++|+|+|++..
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~vsvG-~~~~d~er~~~L~~a~~~~d~iviD~Ah--------------------------- 131 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAVSSG-SSDNDLEKMTSILEAVPQLKFICLDVAN--------------------------- 131 (343)
T ss_pred HHHHHHHHHhhcccccceEEEEec-cCHHHHHHHHHHHhcCCCCCEEEEECCC---------------------------
Confidence 665432 2221 111111222 223334566677776 48888765432
Q ss_pred CCCCch-HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe-----cCCCCCCCCch-hhHHHHHHHHHHhcC
Q 018919 187 LDLGKM-DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS-----NHGARQLDYVP-ATIMALEEVVKATQG 258 (349)
Q Consensus 187 ~~~~~~-~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~-----~~gg~~~~~~~-~~~~~l~~i~~~~~~ 258 (349)
.+... .+.|+|+|+.|+.+.++|+ +.++|+|+.++++|||+|.|+ +|++|+.++.. |+++++.+++++.++
T Consensus 132 -Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~ 210 (343)
T TIGR01305 132 -GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHG 210 (343)
T ss_pred -CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhcc
Confidence 12333 7889999999976777777 999999999999999999998 78888887754 899999999999876
Q ss_pred -CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh-------c----------CH
Q 018919 259 -RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA-------E----------GE 300 (349)
Q Consensus 259 -~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~-------~----------G~ 300 (349)
++|||+||||+++.|++|||++|||+||+|+.+. +++++ . |.
T Consensus 211 ~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~ 290 (343)
T TIGR01305 211 LKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYRASEGK 290 (343)
T ss_pred CCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhhccCcccccccccCc
Confidence 7999999999999999999999999999998662 22211 0 10
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 301 -------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 301 -------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
-.+.+++..+...|+..|.++|..+|+||++.
T Consensus 291 e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 291 TVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred eEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 03788999999999999999999999999654
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=229.06 Aligned_cols=266 Identities=20% Similarity=0.249 Sum_probs=191.9
Q ss_pred hhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCC----CCCCH
Q 018919 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSV 114 (349)
Q Consensus 41 ~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~----~~~~~ 114 (349)
.+||++.|+|. +. +.+++|+++.+.+..+..||+++||++.+ +..|+.+++++|..++++.. ...+.
T Consensus 16 ~~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gVt------~~~la~avs~~GglGvl~~~gl~~~~~~~ 88 (368)
T PRK08649 16 YGLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAVV------SPETAIELGKLGGLGVLNLEGLWTRYEDP 88 (368)
T ss_pred CCcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCcccC------CHHHHHHHHhCCCceEEeeccccccCCCH
Confidence 37999999998 43 56799999999999999999999998754 66999999999998787621 12234
Q ss_pred HHHHh----hCC------------Cce---------------EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 115 EEVAS----TGP------------GIR---------------FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 115 e~i~~----~~~------------~~~---------------~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
+++.+ ..+ .|+ .+.+....++....+.++.+.++|++++.++..+..
T Consensus 89 e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~-- 166 (368)
T PRK08649 89 EPILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVS-- 166 (368)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchh--
Confidence 43322 100 111 111111113334567777888888888887653210
Q ss_pred chhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC-----
Q 018919 164 RREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----- 237 (349)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~----- 237 (349)
- .+ .... .|..+.++++..++||+++.+.+.++|+.++++|||+|.+..++|+
T Consensus 167 -----~--~h--------------~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~ 225 (368)
T PRK08649 167 -----A--EH--------------VSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSR 225 (368)
T ss_pred -----h--hc--------------cCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCc
Confidence 0 00 1122 2666666666689999998899999999999999999998644442
Q ss_pred -CCCCchhhHHHHHHHHHHhc--------CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCH--------
Q 018919 238 -QLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE-------- 300 (349)
Q Consensus 238 -~~~~~~~~~~~l~~i~~~~~--------~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~-------- 300 (349)
....+.|++.++.+++++.+ .++|||++|||+++.|++|||++|||+||+|++|.....+.|.
T Consensus 226 ~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s 305 (368)
T PRK08649 226 GVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAA 305 (368)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCccc
Confidence 12236778888888765421 1599999999999999999999999999999999653322111
Q ss_pred ----------------HHHHHHHH----------HHHHHHHHHHHHcCCCChhhhcccceec
Q 018919 301 ----------------KGVRRVLE----------MLREEFELAMALSGCRSLKEITRDHIVT 336 (349)
Q Consensus 301 ----------------~gv~~~l~----------~l~~el~~~m~~~G~~~i~~l~~~~l~~ 336 (349)
-.+++++. .+...|+..|.++|+.+|+||++..+..
T Consensus 306 ~~~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 306 PHPSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred CCCcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 13777877 9999999999999999999999876653
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-27 Score=224.09 Aligned_cols=256 Identities=24% Similarity=0.311 Sum_probs=196.0
Q ss_pred hhccccccccccc-CCCCCCCcceeEcC-eecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~g-~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|... .+.+++|++|+|.+ +.++.||+.|||.+.+ +..|+.+++++|..+++... .++++..
T Consensus 2 ~~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt------~~~ma~ava~~GglGvi~~~--~~~~~~~ 73 (325)
T cd00381 2 LTFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVT------ESEMAIAMARLGGIGVIHRN--MSIEEQA 73 (325)
T ss_pred CCcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCC------cHHHHHHHHHCCCEEEEeCC--CCHHHHH
Confidence 3699999999865 46789999999988 8899999999998764 66899999999998888643 3455543
Q ss_pred h----hCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-H
Q 018919 119 S----TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-D 193 (349)
Q Consensus 119 ~----~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~ 193 (349)
+ ........+... .+ +...+.++.+.++|++.|+++.... ++.. .
T Consensus 74 ~~i~~vk~~l~v~~~~~-~~-~~~~~~~~~l~eagv~~I~vd~~~G----------------------------~~~~~~ 123 (325)
T cd00381 74 EEVRKVKGRLLVGAAVG-TR-EDDKERAEALVEAGVDVIVIDSAHG----------------------------HSVYVI 123 (325)
T ss_pred HHHHHhccCceEEEecC-CC-hhHHHHHHHHHhcCCCEEEEECCCC----------------------------CcHHHH
Confidence 2 222222333332 22 2345677788889999998765321 1222 5
Q ss_pred HHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC------CCCCchhhHHHHHHHHHHhcC-CCcEEEe
Q 018919 194 EDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQG-RIPVFLD 265 (349)
Q Consensus 194 ~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~------~~~~~~~~~~~l~~i~~~~~~-~ipvia~ 265 (349)
+.++++++..+ +||++..+.+.+.|+.+.++|+|+|++...+|. ....+.+++..+.++.+++.. ++|||++
T Consensus 124 ~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~ 203 (325)
T cd00381 124 EMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIAD 203 (325)
T ss_pred HHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEec
Confidence 77999998874 899988899999999999999999999543321 134577889999998887643 6999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhc------------------------------------------C----
Q 018919 266 GGVRRGTDVFKALALGASGIFIGRPVVYSLAAE------------------------------------------G---- 299 (349)
Q Consensus 266 GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~------------------------------------------G---- 299 (349)
|||+++.|++|+|++||++||+||.|.-...+. |
T Consensus 204 GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~eg~~~~ 283 (325)
T cd00381 204 GGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFGEEAKKLVPEGVEGI 283 (325)
T ss_pred CCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccccccccccccccCCceEEE
Confidence 999999999999999999999999986322110 1
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 300 ---EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 300 ---~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
.-.+.+.+..+...|+..|.++|+.+|+||++...
T Consensus 284 v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~ 321 (325)
T cd00381 284 VPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKAR 321 (325)
T ss_pred EecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCe
Confidence 01378899999999999999999999999997654
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=229.33 Aligned_cols=271 Identities=20% Similarity=0.259 Sum_probs=188.0
Q ss_pred HHHHHHhhccccccccc-ccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCC----
Q 018919 35 TLQENRNAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW---- 109 (349)
Q Consensus 35 t~~~n~~~~~~~~l~p~-~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~---- 109 (349)
+.|+ ...||+|.|+|. ..++.+++||++++.+.+++.||++|||++.+ +.+|+.+++++|.+.+++..
T Consensus 8 ~~~~-~~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagVt------d~~fr~~~~~~Galgvvsaegl~~ 80 (369)
T TIGR01304 8 TARR-TYSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDALV------SPEFAIELGELGGLGVLNLEGLWG 80 (369)
T ss_pred cccc-cCCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCccc------CHHHHHHHHHcCCcccccchHHHh
Confidence 3344 348999999996 55788899999999999999999999999865 66999999999997777631
Q ss_pred CCCCHHH----HHhhCCCc-------eEEEE------------------------eecCChhHHHHHHHHHHHcCCCEEE
Q 018919 110 STSSVEE----VASTGPGI-------RFFQL------------------------YVYKDRNVVAQLVRRAERAGFKAIA 154 (349)
Q Consensus 110 ~~~~~e~----i~~~~~~~-------~~~Ql------------------------~~~~~~~~~~~~~~~~~~~G~~~i~ 154 (349)
.....+. +......+ ...++ ....++....+.++.++++|++.+.
T Consensus 81 ~~~~~~~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ 160 (369)
T TIGR01304 81 RHEDPDPAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLV 160 (369)
T ss_pred cCCCHHHHHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEE
Confidence 1112221 11100000 00000 0111222344566666667777766
Q ss_pred EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC-chHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEec
Q 018919 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG-KMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 155 i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
++-.. ++ ..+ ... ..|..+.++++..++||+++++.+.++|+.+.++|||+|.++.
T Consensus 161 ihgrt-------~~--q~~--------------~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 161 IQGTL-------VS--AEH--------------VSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred Eeccc-------hh--hhc--------------cCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECC
Confidence 54211 00 000 011 1277888888888999999889999999999999999999554
Q ss_pred CCCCC----CCCchhhHHHHHHHHHHh-------c-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCH-
Q 018919 234 HGARQ----LDYVPATIMALEEVVKAT-------Q-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE- 300 (349)
Q Consensus 234 ~gg~~----~~~~~~~~~~l~~i~~~~-------~-~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~- 300 (349)
+|+.. +..+.++...+.+++.+. + ..+|||++|||+++.|++|+|++|||+||+|++|+....+.|.
T Consensus 218 gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~ 297 (369)
T TIGR01304 218 GGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRG 297 (369)
T ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCC
Confidence 44322 223566777777776442 1 1499999999999999999999999999999999865533211
Q ss_pred ----------------------HH----HHHHH----------HHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 301 ----------------------KG----VRRVL----------EMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 301 ----------------------~g----v~~~l----------~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
.| +++++ ..+...|++.|..+|+++++|+++..+.
T Consensus 298 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 298 YFWPAAAAHPRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred CccchhhcCccCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 12 55554 4688999999999999999999987653
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=223.51 Aligned_cols=268 Identities=25% Similarity=0.254 Sum_probs=187.2
Q ss_pred CCcceeEcC-----eecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecC
Q 018919 59 IDMNTTVLG-----FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYK 133 (349)
Q Consensus 59 ~d~s~~l~g-----~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~ 133 (349)
++.++.+++ ..+..||+++||+++.+ .++...+++.+++++|+.+++++.. .+.+++.... ....|+- ..
T Consensus 60 ~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~~~~--~~i~q~~-~~ 134 (392)
T cd02808 60 VDDRVTIGPNAEKPLKLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEGG-ELPEEREGGG--DIIKQVA-SG 134 (392)
T ss_pred cccceeeccccCCccccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCCC-CCHHHHhhhh--heEEEec-CC
Confidence 344666654 35578999999998775 4456679999999999999888754 4666664332 2445541 11
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCC---CCc-----h-hHHhhhhcCCCCcCcc---cccCCCCCCch-HHHHHHHH
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPR---LGR-----R-EADIKNRFTLPPFLTL---KNFQGLDLGKM-DEDVKWLQ 200 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~---~g~-----r-~~d~~~~~~~p~~~~~---~~~~~~~~~~~-~~~i~~i~ 200 (349)
......+..+ .+++|++.+..-. .|- + ..++.....++.+... +....+.+++. .+.++++|
T Consensus 135 ~fGv~~~~~~-----~~~~ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr 209 (392)
T cd02808 135 RFGVRPEYLN-----KADAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLR 209 (392)
T ss_pred CCccCHHHcc-----cCcEEEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHH
Confidence 1111111221 1677777765211 110 0 0111111112221111 11111233333 56799999
Q ss_pred HhcC-CcEEEEEecC--HHHHHHHHHcC-CCEEEEecCCCCC--------CCCchhhHHHHHHHHHHh-----cCCCcEE
Q 018919 201 TITK-LPILVKGVLT--AEDARIAVQAG-AAGIIVSNHGARQ--------LDYVPATIMALEEVVKAT-----QGRIPVF 263 (349)
Q Consensus 201 ~~~~-~pv~vK~v~~--~~~a~~a~~~G-~d~I~v~~~gg~~--------~~~~~~~~~~l~~i~~~~-----~~~ipvi 263 (349)
+.++ +||++|++.. .+++..+.+.| +|+|+|+|++|.+ .+++.|+...|.++++++ +.++|||
T Consensus 210 ~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~vi 289 (392)
T cd02808 210 EATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLI 289 (392)
T ss_pred HhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEE
Confidence 9998 9999999864 66666666655 9999999996532 346788899999998876 2479999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhc-----------------------------CHHHHHHHHHHHHHHH
Q 018919 264 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREEF 314 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~-----------------------------G~~gv~~~l~~l~~el 314 (349)
++|||+++.|++|+|++|||+|++||+|+++++|. |.++|.++++.+.+||
T Consensus 290 asGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~el 369 (392)
T cd02808 290 ASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEEL 369 (392)
T ss_pred EECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988654 7789999999999999
Q ss_pred HHHHHHcCCCChhhhcccceec
Q 018919 315 ELAMALSGCRSLKEITRDHIVT 336 (349)
Q Consensus 315 ~~~m~~~G~~~i~~l~~~~l~~ 336 (349)
+.+|..+|+.++++++++++..
T Consensus 370 ~~~m~~~G~~~~~~l~~~~l~~ 391 (392)
T cd02808 370 RELAAALGKRSLELLGRSDLLA 391 (392)
T ss_pred HHHHHHhCCCChHHCCHHHhhc
Confidence 9999999999999999887743
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=219.55 Aligned_cols=256 Identities=23% Similarity=0.322 Sum_probs=184.8
Q ss_pred hhccccccccccc---CCCCCCCcceeE-cCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHH
Q 018919 41 NAFSRILFRPRIL---IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE 116 (349)
Q Consensus 41 ~~~~~~~l~p~~l---~~~~~~d~s~~l-~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~ 116 (349)
.+||++.|+|... ++..++|+++.+ .+.+++.||+.|||...+ +..||.+.++.|..+++.-+ .++|+
T Consensus 3 ltfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVt------e~~mAiama~~Gglgvih~~--~~~e~ 74 (352)
T PF00478_consen 3 LTFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVT------ESEMAIAMARLGGLGVIHRN--MSIEE 74 (352)
T ss_dssp --GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTS------SHHHHHHHHHTTSEEEEESS--SCHHH
T ss_pred CccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccc------hHHHHHHHHHhcCCceecCC--CCHHH
Confidence 3699999999864 456677777666 679999999999997654 77999999999999998644 45544
Q ss_pred H-------HhhCC-------CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc
Q 018919 117 V-------ASTGP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (349)
Q Consensus 117 i-------~~~~~-------~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~ 182 (349)
. ++..| +...+-..... .+...+.++.+.++|+|.|+|+...
T Consensus 75 q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~-~~~~~er~~~L~~agvD~ivID~a~----------------------- 130 (352)
T PF00478_consen 75 QAEEVKKVKRYYPNASKDEKGRLLVAAAVGT-RDDDFERAEALVEAGVDVIVIDSAH----------------------- 130 (352)
T ss_dssp HHHHHHHHHTHHTTHHBHTTSCBCEEEEEES-STCHHHHHHHHHHTT-SEEEEE-SS-----------------------
T ss_pred HHHHHhhhccccccccccccccceEEEEecC-CHHHHHHHHHHHHcCCCEEEccccC-----------------------
Confidence 2 22111 12222222221 2223567777888999999875432
Q ss_pred ccCCCCCCch-HHHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHH
Q 018919 183 NFQGLDLGKM-DEDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVK 254 (349)
Q Consensus 183 ~~~~~~~~~~-~~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~ 254 (349)
.+... .+.++++|+.++ +||++..+.|.+.++.+.++|||+|.|.-.+|.- ...|.|++.++.++++
T Consensus 131 -----g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~ 205 (352)
T PF00478_consen 131 -----GHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAE 205 (352)
T ss_dssp -----TTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHH
Confidence 12333 678999999995 9999999999999999999999999997655542 2347789999999988
Q ss_pred HhcC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh----------------
Q 018919 255 ATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA---------------- 297 (349)
Q Consensus 255 ~~~~-~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~---------------- 297 (349)
+.++ .+|||+||||+++.|++|||++|||+||+|+.|- +++++
T Consensus 206 ~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry~~ 285 (352)
T PF00478_consen 206 AARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRYFQ 285 (352)
T ss_dssp HHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTCTS
T ss_pred HhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhccc
Confidence 7643 7999999999999999999999999999999772 11110
Q ss_pred --------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 298 --------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 298 --------~G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
+|. -.+.+++..|...|+..|.++|..+|+||++..
T Consensus 286 ~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 286 AEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp STSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred cccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 111 137899999999999999999999999999764
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=222.05 Aligned_cols=255 Identities=20% Similarity=0.262 Sum_probs=190.7
Q ss_pred hhccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|... ...+++|++|.+. .+.+..||+.|||++.+ +..||.+.+++|..++++. ..++|++.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt------~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCC------CHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 4799999999865 3567899999885 56778999999998754 5689999999999999974 35566542
Q ss_pred hh----CC----CceE------------------E------------------------EEee----cCChhHHHHHHHH
Q 018919 119 ST----GP----GIRF------------------F------------------------QLYV----YKDRNVVAQLVRR 144 (349)
Q Consensus 119 ~~----~~----~~~~------------------~------------------------Ql~~----~~~~~~~~~~~~~ 144 (349)
+. .. .... + ||.. ..++ .+.+.++.
T Consensus 82 ~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~-~~~~~v~~ 160 (404)
T PRK06843 82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDI-DTIERVEE 160 (404)
T ss_pred HHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCH-HHHHHHHH
Confidence 21 10 0000 0 0111 1122 25678888
Q ss_pred HHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHH
Q 018919 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAV 222 (349)
Q Consensus 145 ~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~ 222 (349)
+.++|+|.|.|+...+ ++.. ++.++++|+++ +++|+++++.+.++++.+.
T Consensus 161 lv~aGvDvI~iD~a~g----------------------------~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~ 212 (404)
T PRK06843 161 LVKAHVDILVIDSAHG----------------------------HSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLI 212 (404)
T ss_pred HHhcCCCEEEEECCCC----------------------------CChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHH
Confidence 8899999988644321 1223 67899999998 7899999999999999999
Q ss_pred HcCCCEEEEecCCC-----CCCC-CchhhHHHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH--
Q 018919 223 QAGAAGIIVSNHGA-----RQLD-YVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY-- 293 (349)
Q Consensus 223 ~~G~d~I~v~~~gg-----~~~~-~~~~~~~~l~~i~~~~~-~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~-- 293 (349)
++|+|+|.++...| +..+ .|.|++..+.++.+.+. .++|||++|||+++.|++|||++||++||+|++|.-
T Consensus 213 ~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~ 292 (404)
T PRK06843 213 SVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTK 292 (404)
T ss_pred HcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeee
Confidence 99999999864333 3333 36678888877776653 269999999999999999999999999999998842
Q ss_pred ------------------HHhh-----cC-----------------HH----------HHHHHHHHHHHHHHHHHHHcCC
Q 018919 294 ------------------SLAA-----EG-----------------EK----------GVRRVLEMLREEFELAMALSGC 323 (349)
Q Consensus 294 ------------------~~~~-----~G-----------------~~----------gv~~~l~~l~~el~~~m~~~G~ 323 (349)
++++ .| ++ .+.+++..+...|+..|.++|+
T Consensus 293 Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga 372 (404)
T PRK06843 293 ESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGA 372 (404)
T ss_pred cCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCCccEEEecCCCCHHHHHHHHHHHHHHHhhccCC
Confidence 2211 00 01 1788999999999999999999
Q ss_pred CChhhhccc
Q 018919 324 RSLKEITRD 332 (349)
Q Consensus 324 ~~i~~l~~~ 332 (349)
.+|.||+..
T Consensus 373 ~~i~el~~~ 381 (404)
T PRK06843 373 ATISDLKIN 381 (404)
T ss_pred CcHHHHHhc
Confidence 999999854
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-26 Score=211.03 Aligned_cols=255 Identities=19% Similarity=0.215 Sum_probs=191.6
Q ss_pred hhccccccccccc--CCCCCCCcceeEc-----CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCC
Q 018919 41 NAFSRILFRPRIL--IDVSKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113 (349)
Q Consensus 41 ~~~~~~~l~p~~l--~~~~~~d~s~~l~-----g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~ 113 (349)
.+||++.|+|+.. .+.+++|++.+|. ...+..||+.|+|... ++..||.+.++.|..+++.-+ .+
T Consensus 9 l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV------~~~~mA~~la~~g~~~~iHk~--~~ 80 (346)
T PRK05096 9 LGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTV------GTFEMAKALASFDILTAVHKH--YS 80 (346)
T ss_pred CCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCcc------ccHHHHHHHHHCCCeEEEecC--CC
Confidence 4799999999744 4667999988875 3456799999999764 477999999999999999643 45
Q ss_pred HHHHHh----hCCC-ceEEEEeecCChhHHHHHHHHHHH--cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCC
Q 018919 114 VEEVAS----TGPG-IRFFQLYVYKDRNVVAQLVRRAER--AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (349)
Q Consensus 114 ~e~i~~----~~~~-~~~~Ql~~~~~~~~~~~~~~~~~~--~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (349)
+|+..+ ..+. ...+-+.....+ ...+.++.+.+ +|+|+|+|++..-
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~vavG~~~-~d~er~~~L~~~~~g~D~iviD~AhG-------------------------- 133 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMVSTGTSD-ADFEKTKQILALSPALNFICIDVANG-------------------------- 133 (346)
T ss_pred HHHHHHHHHhccccccceEEEEecCCH-HHHHHHHHHHhcCCCCCEEEEECCCC--------------------------
Confidence 766443 2221 111111222222 33455666666 5899988655321
Q ss_pred CCCCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhcC
Q 018919 187 LDLGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG 258 (349)
Q Consensus 187 ~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~~ 258 (349)
+... .+.|+++|+.+ +++|++..+.|+|.++.++++|||+|.|.-..|.- ...|.|++.++.+++++.+.
T Consensus 134 --hs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~ 211 (346)
T PRK05096 134 --YSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHG 211 (346)
T ss_pred --cHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHH
Confidence 2233 68899999998 68999999999999999999999999997555531 23467899999999887643
Q ss_pred -CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh-------cC-------HH--
Q 018919 259 -RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA-------EG-------EK-- 301 (349)
Q Consensus 259 -~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~-------~G-------~~-- 301 (349)
.+|||+||||++..|++|||++|||+||+|+.|- +++++ .| ++
T Consensus 212 ~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~ 291 (346)
T PRK05096 212 LGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGK 291 (346)
T ss_pred cCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhhccCcccccccccCc
Confidence 6999999999999999999999999999999882 22221 01 01
Q ss_pred --------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 302 --------GVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 302 --------gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
.+.+++..+...|+..|.++|..+|+||++.
T Consensus 292 ~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~ 330 (346)
T PRK05096 292 TVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR 330 (346)
T ss_pred eEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhC
Confidence 2788999999999999999999999999654
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=201.26 Aligned_cols=238 Identities=19% Similarity=0.232 Sum_probs=173.2
Q ss_pred CcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCCC--------------------------
Q 018919 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS-------------------------- 112 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~~-------------------------- 112 (349)
|++|+++|+++.+||++|.-+.. .+....+.+...|..+++. |.+..
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~~------~~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~i 74 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLS------RNLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYF 74 (325)
T ss_pred CceEEECCEecCCCCEeCCcCCC------CCHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccc
Confidence 67999999999999999753321 1334455577777776642 21100
Q ss_pred --------CH----HHHHhhC---CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC
Q 018919 113 --------SV----EEVASTG---PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (349)
Q Consensus 113 --------~~----e~i~~~~---~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~ 177 (349)
.+ +++.+.. ..+.++|+.. .+.+.+.+.++.++++|+++++||++||... |
T Consensus 75 n~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~gad~iElN~s~~~~~------------~- 140 (325)
T cd04739 75 PEYGRYNLGPEEYLELIRRAKRAVSIPVIASLNG-VSAGGWVDYARQIEEAGADALELNIYALPTD------------P- 140 (325)
T ss_pred ccccccCcCHHHHHHHHHHHHhccCCeEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC------------C-
Confidence 11 1222211 2467889865 5677788999999999999999999985310 1
Q ss_pred cCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC----HHHHHHHHHcCCCEEEEecCCC-CCCC-----------
Q 018919 178 FLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHGA-RQLD----------- 240 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~----~~~a~~a~~~G~d~I~v~~~gg-~~~~----------- 240 (349)
+ ... ...++. .+.++++++.+++||++|+..+ .+.++.+.++|+|+|+++|+.. ...+
T Consensus 141 ~--~~g---~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~g 215 (325)
T cd04739 141 D--ISG---AEVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLL 215 (325)
T ss_pred C--ccc---chHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCC
Confidence 0 000 001223 5779999999999999998754 3678889999999999998742 1111
Q ss_pred -Cch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 241 -YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 241 -~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
+|+ -.++.+.++++.+ ++|||++|||+|++|+.++|.+||++||+||++++ .|+ .++..+.+||+
T Consensus 216 lSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~----~gp----~~~~~i~~~L~ 285 (325)
T cd04739 216 LSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR----HGP----DYIGTLLAGLE 285 (325)
T ss_pred cCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh----cCc----hHHHHHHHHHH
Confidence 121 2456667776655 79999999999999999999999999999999986 355 37888999999
Q ss_pred HHHHHcCCCChhhhccc
Q 018919 316 LAMALSGCRSLKEITRD 332 (349)
Q Consensus 316 ~~m~~~G~~~i~~l~~~ 332 (349)
.+|...|+++++|+++.
T Consensus 286 ~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 286 AWMEEHGYESVQQLRGS 302 (325)
T ss_pred HHHHHcCCCCHHHHhcc
Confidence 99999999999999884
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-24 Score=200.44 Aligned_cols=237 Identities=22% Similarity=0.292 Sum_probs=173.4
Q ss_pred cceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCC--------------------------CCC
Q 018919 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS--------------------------TSS 113 (349)
Q Consensus 61 ~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~--------------------------~~~ 113 (349)
++|+++|+++++||++||...+. +....+.+.+.|..+++. +.. +..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~------~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGS------GVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCC------CHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 47899999999999999942211 223344455558777665 111 112
Q ss_pred HHH----HHhh---CCCceEEEEeecCChhHHHHHHHHHHHc--CCCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc
Q 018919 114 VEE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (349)
Q Consensus 114 ~e~----i~~~---~~~~~~~Ql~~~~~~~~~~~~~~~~~~~--G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (349)
.+. +... .+.+.++|++. .+++.+.+.++.++++ +++++++|+.||.... + +..-
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g-~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~--------~------g~~l- 138 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYG-SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKG--------G------GIAI- 138 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeec-CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCC--------C------cccc-
Confidence 222 2211 12468899986 5788888889998876 3999999999996411 0 0000
Q ss_pred CCCCCCch-HHHHHHHHHhcCCcEEEEEecCH----HHHHHHHHcCCCEEEEecC-CCCCC---------------CCch
Q 018919 185 QGLDLGKM-DEDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQL---------------DYVP 243 (349)
Q Consensus 185 ~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~----~~a~~a~~~G~d~I~v~~~-gg~~~---------------~~~~ 243 (349)
..++++ .+.++++|+.+++||++|+..+. +.++.+.++|+|+|+++|+ .++.. ..|+
T Consensus 139 --~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~ 216 (300)
T TIGR01037 139 --GQDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGP 216 (300)
T ss_pred --ccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccch
Confidence 235666 78899999999999999997554 4578899999999999874 12110 1122
Q ss_pred h----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 018919 244 A----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMA 319 (349)
Q Consensus 244 ~----~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~ 319 (349)
+ .++.+.++++.+ ++|||++|||++++|+.++|++|||+||+||++++. + .++..++++|+.+|.
T Consensus 217 ~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~----p-----~~~~~i~~~l~~~~~ 285 (300)
T TIGR01037 217 AIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR----G-----FAFKKIIEGLIAFLK 285 (300)
T ss_pred hhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC----c-----hHHHHHHHHHHHHHH
Confidence 2 346777787776 699999999999999999999999999999999862 2 478899999999999
Q ss_pred HcCCCChhhhccc
Q 018919 320 LSGCRSLKEITRD 332 (349)
Q Consensus 320 ~~G~~~i~~l~~~ 332 (349)
..|+++++|+.+.
T Consensus 286 ~~g~~~~~e~~g~ 298 (300)
T TIGR01037 286 AEGFTSIEELIGI 298 (300)
T ss_pred HcCCCCHHHHhCc
Confidence 9999999999764
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-23 Score=195.16 Aligned_cols=238 Identities=22% Similarity=0.249 Sum_probs=178.7
Q ss_pred CcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCCC--------------------------C
Q 018919 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------S 112 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~~--------------------------~ 112 (349)
|++|+++|+++++||++|+=... .+..+++.+.+.|..+++ .|.+. .
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFG------FGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCCC------CCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 68999999999999999972121 133677777788877765 33321 0
Q ss_pred CHH----HHHhhC---CCceEEEEeecCChhHHHHHHHHHHHcC-CCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc
Q 018919 113 SVE----EVASTG---PGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (349)
Q Consensus 113 ~~e----~i~~~~---~~~~~~Ql~~~~~~~~~~~~~~~~~~~G-~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (349)
.++ ++.+.. ..+.++|+.. .+.+...+.+++++++| +|+|+||+.||+.. + + +...
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~g-~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~-------~------g-g~~~- 138 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVAG-STEEEYAEVAEKLSKAPNVDAIELNISCPNVK-------H------G-GMAF- 138 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEecc-CCHHHHHHHHHHHhccCCcCEEEEECCCCCCC-------C------C-cccc-
Confidence 122 222211 2567899876 57888889999999998 99999999998631 0 0 0000
Q ss_pred CCCCCCch-HHHHHHHHHhcCCcEEEEEecCH----HHHHHHHHcCCCEEEEecC--CCC-CC-------------CCc-
Q 018919 185 QGLDLGKM-DEDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH--GAR-QL-------------DYV- 242 (349)
Q Consensus 185 ~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~----~~a~~a~~~G~d~I~v~~~--gg~-~~-------------~~~- 242 (349)
..++++ ++.++++|+.+++||++|+..+. +.++.+.++|+|+|+++|. |.+ .. ..+
T Consensus 139 --~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~ 216 (301)
T PRK07259 139 --GTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGP 216 (301)
T ss_pred --ccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCc
Confidence 135667 78899999999999999998654 4478899999999999763 211 00 011
Q ss_pred ---hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 018919 243 ---PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMA 319 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~ 319 (349)
+..++.+.++++.+ ++|||++|||++++|+.+++++|||+|++||++++ ++ .+++.++++++.+|.
T Consensus 217 ~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-----~P----~~~~~i~~~l~~~~~ 285 (301)
T PRK07259 217 AIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-----DP----YAFPKIIEGLEAYLD 285 (301)
T ss_pred CcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-----Cc----HHHHHHHHHHHHHHH
Confidence 22567888888877 79999999999999999999999999999999986 34 477889999999999
Q ss_pred HcCCCChhhhccc
Q 018919 320 LSGCRSLKEITRD 332 (349)
Q Consensus 320 ~~G~~~i~~l~~~ 332 (349)
..|+++++|+.+.
T Consensus 286 ~~g~~~i~~~~g~ 298 (301)
T PRK07259 286 KYGIKSIEEIVGI 298 (301)
T ss_pred HcCCCCHHHHhCc
Confidence 9999999999764
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-23 Score=196.45 Aligned_cols=239 Identities=19% Similarity=0.236 Sum_probs=171.8
Q ss_pred CcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCC---------------------------
Q 018919 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------- 111 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~--------------------------- 111 (349)
|++|+++|++|++||++|.-.... .....+.+.+.|..+++. |.+.
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~~------~~~~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLSE------SVDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDY 75 (334)
T ss_pred CceEEECCEecCCCCEecCcCCCC------CHHHHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhh
Confidence 689999999999999988743321 223344477777666542 1110
Q ss_pred --------CCHHH----HHhh---CCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCC
Q 018919 112 --------SSVEE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (349)
Q Consensus 112 --------~~~e~----i~~~---~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p 176 (349)
..+++ +.+. ...+.+.|+.. .+.+...+.++.++++|++++++|+.||... +
T Consensus 76 ~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~------------~ 142 (334)
T PRK07565 76 FPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTD------------P 142 (334)
T ss_pred hhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC------------C
Confidence 11222 1111 12467889876 4666777889999999999999999986420 0
Q ss_pred CcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC----HHHHHHHHHcCCCEEEEecCCCC-CC---------C-
Q 018919 177 PFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHGAR-QL---------D- 240 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~----~~~a~~a~~~G~d~I~v~~~gg~-~~---------~- 240 (349)
... +...+.. ++.++++++.+++||++|.... .+.++.+.++|+|+|+++|+... .. .
T Consensus 143 ---~~~---g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~ 216 (334)
T PRK07565 143 ---DIS---GAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGL 216 (334)
T ss_pred ---CCc---cccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCC
Confidence 000 0011223 6889999999999999998643 35678889999999999886321 11 1
Q ss_pred --Cch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 241 --YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 241 --~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
+|+ ..++.+.++++.+ ++|||++|||+|++|+.|+|.+||++||+||++++ .|+ .+++.+.+||
T Consensus 217 glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~----~g~----~~~~~i~~~L 286 (334)
T PRK07565 217 VLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR----HGP----DYIGTILRGL 286 (334)
T ss_pred CCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh----hCc----HHHHHHHHHH
Confidence 122 2356666666665 79999999999999999999999999999999987 355 4788999999
Q ss_pred HHHHHHcCCCChhhhcccc
Q 018919 315 ELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 315 ~~~m~~~G~~~i~~l~~~~ 333 (349)
+.+|...|+++++|+++..
T Consensus 287 ~~~l~~~g~~~i~e~~g~~ 305 (334)
T PRK07565 287 EDWMERHGYESLQQFRGSM 305 (334)
T ss_pred HHHHHHcCCCCHHHHhccc
Confidence 9999999999999998754
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-23 Score=198.47 Aligned_cols=250 Identities=19% Similarity=0.261 Sum_probs=179.6
Q ss_pred CCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCC--C----------------------
Q 018919 57 SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS--T---------------------- 111 (349)
Q Consensus 57 ~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~--~---------------------- 111 (349)
+..|++|+|+|+++.+||++|.-.. .......+.+.++|...++. +.+ +
T Consensus 7 ~~~dLst~~~Gl~l~NP~i~ASgp~------t~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~ 80 (385)
T PLN02495 7 SEPDLSVTVNGLKMPNPFVIGSGPP------GTNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAK 80 (385)
T ss_pred CCCcceEEECCEEcCCCcEeCCccC------CCCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCcccccccc
Confidence 4678999999999999999998322 12345555556667776652 110 0
Q ss_pred -C-------------CHH----HHHh---hCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHh
Q 018919 112 -S-------------SVE----EVAS---TGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 169 (349)
Q Consensus 112 -~-------------~~e----~i~~---~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~ 169 (349)
. .++ ++.+ ..| .+.+..+....+.+.+.+.+++++++|++++++|+.||+.. -+++
T Consensus 81 ~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~-~~r~- 158 (385)
T PLN02495 81 GRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM-PERK- 158 (385)
T ss_pred cccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CcCc-
Confidence 0 122 2222 223 36777876556788899999999999999999999999631 1110
Q ss_pred hhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH----HHHHHHHHcCCCEEEEecCCC--CC----
Q 018919 170 KNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHGA--RQ---- 238 (349)
Q Consensus 170 ~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~----~~a~~a~~~G~d~I~v~~~gg--~~---- 238 (349)
..... ..+++. .+.++++++.+++||++|+.++. +.|+.|.++|+|+|++.|+-. ..
T Consensus 159 ---------~g~~~---gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~ 226 (385)
T PLN02495 159 ---------MGAAV---GQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLD 226 (385)
T ss_pred ---------cchhh---ccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccc
Confidence 00000 135566 56689999988999999998654 457889999999999998622 10
Q ss_pred -------C-----CC---ch----hhHHHHHHHHHHhc----CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHH
Q 018919 239 -------L-----DY---VP----ATIMALEEVVKATQ----GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 239 -------~-----~~---~~----~~~~~l~~i~~~~~----~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
. .+ |+ -++..+.++++.++ .++||++.|||.+++|++++|.+||++||+||++++
T Consensus 227 t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~-- 304 (385)
T PLN02495 227 TLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMM-- 304 (385)
T ss_pred cCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeee--
Confidence 0 11 22 13455566666653 259999999999999999999999999999999886
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 296 AAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 296 ~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
.|. .+++.+.+||+.+|...|+++++|+++..+
T Consensus 305 --~Gp----~vi~~i~~~L~~~m~~~G~~si~e~~G~~~ 337 (385)
T PLN02495 305 --HGY----PLVKNLCAELQDFMKKHNFSSIEDFRGASL 337 (385)
T ss_pred --cCc----HHHHHHHHHHHHHHHHcCCCCHHHHhCcCC
Confidence 466 377889999999999999999999987654
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-23 Score=204.69 Aligned_cols=142 Identities=23% Similarity=0.369 Sum_probs=118.1
Q ss_pred Cch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC------CCCCchhhHHHHHHHHHHhcC-CC
Q 018919 190 GKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQG-RI 260 (349)
Q Consensus 190 ~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~------~~~~~~~~~~~l~~i~~~~~~-~i 260 (349)
..+ |+.|+++|+.+ ++||+++.+.+.++++.+.++|||+|.++.+.|. ..+.|.|++.++.++++.+.. ++
T Consensus 266 s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v 345 (495)
T PTZ00314 266 SIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGV 345 (495)
T ss_pred chHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCC
Confidence 344 78999999997 7999999999999999999999999999754331 234677888888888877642 69
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH--------------------HHhh------c----------------
Q 018919 261 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA------E---------------- 298 (349)
Q Consensus 261 pvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~--------------------~~~~------~---------------- 298 (349)
|||++|||+++.|++|||++||++||+|+.|.- +++. .
T Consensus 346 ~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~~ 425 (495)
T PTZ00314 346 PCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKVA 425 (495)
T ss_pred eEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhcccccccccccccccccC
Confidence 999999999999999999999999999998842 2211 0
Q ss_pred -CH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 018919 299 -GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 331 (349)
Q Consensus 299 -G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~ 331 (349)
|. -.+.+++..+..+|+..|.++|+.+|.||+.
T Consensus 426 egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 426 QGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred CceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 10 1278899999999999999999999999987
|
|
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-22 Score=194.63 Aligned_cols=267 Identities=23% Similarity=0.304 Sum_probs=175.4
Q ss_pred cchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCC
Q 018919 31 EDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSW 109 (349)
Q Consensus 31 ~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~ 109 (349)
+-|..++-....+... +.|+. ...++.+++++++|+++++||++|+ |+ +. +........+.|..++ ++|.
T Consensus 46 dpE~aH~~~~~~l~~~-~~~~~-~~~~~~~L~~~~~Gl~f~NPvglAA-G~----dk--n~~~~~~l~~lGfG~vevgTV 116 (409)
T PLN02826 46 DPETAHSLAISAAARG-LVPRE-KRPDPSVLGVEVWGRTFSNPIGLAA-GF----DK--NAEAVEGLLGLGFGFVEIGSV 116 (409)
T ss_pred CHHHHHHHHHHHHHhh-ccccc-ccCCCCCcceEECCEECCCCCEECc-cc----CC--CHHHHHHHHhcCCCeEEeCCc
Confidence 4444544444444422 33421 1245678999999999999999998 33 22 3345555566676655 3444
Q ss_pred CCC----------------------------CHH----HHHhhC-------------------------CCceEEEEeec
Q 018919 110 STS----------------------------SVE----EVASTG-------------------------PGIRFFQLYVY 132 (349)
Q Consensus 110 ~~~----------------------------~~e----~i~~~~-------------------------~~~~~~Ql~~~ 132 (349)
++. .++ ++.+.. +.+.++++..+
T Consensus 117 T~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~n 196 (409)
T PLN02826 117 TPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAVAKRLGAQHGKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKN 196 (409)
T ss_pred cCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHHHHHHHHHhhhcccccccccccccccccccccccCceEEEEeccC
Confidence 321 111 121111 01456676543
Q ss_pred CCh-hHHHHHHHHHHHc--CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh------
Q 018919 133 KDR-NVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI------ 202 (349)
Q Consensus 133 ~~~-~~~~~~~~~~~~~--G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~------ 202 (349)
++. +...+.++.++.. .+|+++||+.||.. | ..+. ..+++. .+.++.+++.
T Consensus 197 k~~~~~~~Dy~~~~~~~~~~aDylelNiScPNt-------------p---glr~---lq~~~~l~~ll~~V~~~~~~~~~ 257 (409)
T PLN02826 197 KTSEDAAADYVQGVRALSQYADYLVINVSSPNT-------------P---GLRK---LQGRKQLKDLLKKVLAARDEMQW 257 (409)
T ss_pred CCCcccHHHHHHHHHHHhhhCCEEEEECCCCCC-------------C---Cccc---ccChHHHHHHHHHHHHHHHHhhh
Confidence 321 1233444444443 39999999999853 1 0111 223333 3445555422
Q ss_pred ---cCCcEEEEEec--CHHH----HHHHHHcCCCEEEEecCC-CC----------CCC---Cch----hhHHHHHHHHHH
Q 018919 203 ---TKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHG-AR----------QLD---YVP----ATIMALEEVVKA 255 (349)
Q Consensus 203 ---~~~pv~vK~v~--~~~~----a~~a~~~G~d~I~v~~~g-g~----------~~~---~~~----~~~~~l~~i~~~ 255 (349)
.++||++|+.+ +.++ |+.+.++|+|+|+++|+- ++ +.. +|+ .+++.+.++++.
T Consensus 258 ~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~ 337 (409)
T PLN02826 258 GEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRL 337 (409)
T ss_pred ccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHH
Confidence 46899999963 4334 788999999999999841 11 111 222 267888999888
Q ss_pred hcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 256 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 256 ~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
+++++|||++|||++++|++++|.+||++||+||++++ .|+ .++..+++||.++|...|+++++|+.+..
T Consensus 338 ~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp----~~i~~I~~eL~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 338 TRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGP----ALIPRIKAELAACLERDGFKSIQEAVGAD 407 (409)
T ss_pred hCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCH----HHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 87789999999999999999999999999999999987 366 37788999999999999999999998743
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=189.79 Aligned_cols=236 Identities=21% Similarity=0.236 Sum_probs=172.5
Q ss_pred ceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCCC--------------------------CH
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS--------------------------SV 114 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~~--------------------------~~ 114 (349)
+|+++|+++.+||++|+ +..+ ....+.+.+...|..+++. +.+.. .+
T Consensus 1 ~~~~~G~~~~nP~~~aa-g~~~-----~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILAS-GTFG-----FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECC-CCCC-----CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 57899999999999995 2211 1234555555544666653 22211 11
Q ss_pred HH----HHhh---CCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCC
Q 018919 115 EE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (349)
Q Consensus 115 e~----i~~~---~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (349)
++ +.+. ...+.++||.. .+.+...+.+++++++|+|+|+||+.||....+- ... .
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g--------------~~~---~ 136 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGGG--------------MAF---G 136 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCc--------------ccc---c
Confidence 22 2221 12568899976 5678888999999999999999999999641110 000 1
Q ss_pred CCCch-HHHHHHHHHhcCCcEEEEEecCH----HHHHHHHHcCCCEEEEecC-CCCC---------------CCCch---
Q 018919 188 DLGKM-DEDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQ---------------LDYVP--- 243 (349)
Q Consensus 188 ~~~~~-~~~i~~i~~~~~~pv~vK~v~~~----~~a~~a~~~G~d~I~v~~~-gg~~---------------~~~~~--- 243 (349)
.++++ .+.++++|+.+++||++|...+. +.++.+.++|+|+|+++|+ .++. ...|+
T Consensus 137 ~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~ 216 (296)
T cd04740 137 TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIK 216 (296)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccc
Confidence 35666 78899999988999999986543 5578899999999999874 1211 01122
Q ss_pred -hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcC
Q 018919 244 -ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 322 (349)
Q Consensus 244 -~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G 322 (349)
..++.+.++++.+ ++|||++|||++++|+.++|++|||+|++||++++ ++ .++..+.++++.+|...|
T Consensus 217 ~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~-----~p----~~~~~i~~~l~~~~~~~g 285 (296)
T cd04740 217 PIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV-----DP----EAFKEIIEGLEAYLDEEG 285 (296)
T ss_pred hHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-----Ch----HHHHHHHHHHHHHHHHcC
Confidence 2467788888776 79999999999999999999999999999999985 34 467899999999999999
Q ss_pred CCChhhhccc
Q 018919 323 CRSLKEITRD 332 (349)
Q Consensus 323 ~~~i~~l~~~ 332 (349)
+++++|+++.
T Consensus 286 ~~~~~~~~g~ 295 (296)
T cd04740 286 IKSIEELVGL 295 (296)
T ss_pred CCCHHHHhCc
Confidence 9999999763
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-23 Score=194.96 Aligned_cols=250 Identities=17% Similarity=0.183 Sum_probs=182.6
Q ss_pred eEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHH------H--HHhhC--CCceEEEEeecC
Q 018919 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE------E--VASTG--PGIRFFQLYVYK 133 (349)
Q Consensus 64 ~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e------~--i~~~~--~~~~~~Ql~~~~ 133 (349)
++.+.++..|+++|||++.+ +.++++.+.++|..++++++-+.... . ..... +.+..+|+++ .
T Consensus 2 ~i~~~~~~~~~~lAPM~g~t------d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g-~ 74 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGIT------DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAG-S 74 (321)
T ss_pred ccCCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeC-C
Confidence 35567788999999999876 77999999999998888887432211 0 11111 2456799987 6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v 212 (349)
+++.+.+.++.+++.|++.|+||++||+. +. . ..+.+..- +.+|++ .+.++.+++.+++||.+|..
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~--~v--~------~~g~Gs~l---l~~p~~~~eiv~av~~a~d~pv~vKiR 141 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAK--KV--N------RKLAGSAL---LQYPDLVKSILTEVVNAVDVPVTLKIR 141 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHH--HH--c------CCCcccHH---hcCHHHHHHHHHHHHHhcCCceEEEEE
Confidence 88888888988888999999999999963 00 0 00111111 356777 77899999999999999996
Q ss_pred c--------CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCC
Q 018919 213 L--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGAS 283 (349)
Q Consensus 213 ~--------~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~ 283 (349)
. ..+.++.+.++|+|.|++++....+...|++.++.+.++++.+ ++|||++|||++++|+.++++ .|||
T Consensus 142 ~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~nGgI~s~~da~~~l~~~gad 219 (321)
T PRK10415 142 TGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIANGDITDPLKARAVLDYTGAD 219 (321)
T ss_pred ccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHhccCCC
Confidence 2 1256788899999999995432224556777899999999887 799999999999999999998 7999
Q ss_pred EEEEchHHH-----HHHhh----cC----HHHHHHHHHHHHHHHHHHHHHcCCC-Chhhhccccee
Q 018919 284 GIFIGRPVV-----YSLAA----EG----EKGVRRVLEMLREEFELAMALSGCR-SLKEITRDHIV 335 (349)
Q Consensus 284 ~V~ig~~~l-----~~~~~----~G----~~gv~~~l~~l~~el~~~m~~~G~~-~i~~l~~~~l~ 335 (349)
+||+||+++ +.... .| +...++.++.+.++++.+..+.|.. .+.+++++..+
T Consensus 220 gVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~ 285 (321)
T PRK10415 220 ALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSW 285 (321)
T ss_pred EEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 999999554 43211 12 1234567778888888888877754 56677766444
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=186.12 Aligned_cols=175 Identities=25% Similarity=0.385 Sum_probs=140.8
Q ss_pred ChhHHHHHHHHHHHcC-CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 134 DRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G-~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
..+...+.+..+++.+ ++++++|++||+. |. .+.+ ..+++. .+.++++++..++||++|+
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt-------------~g---~~~l--~~~~e~l~~l~~~vk~~~~~Pv~vKl 168 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNT-------------PG---GRAL--GQDPELLEKLLEAVKAATKVPVFVKL 168 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCC-------------CC---hhhh--ccCHHHHHHHHHHHHhcccCceEEEe
Confidence 4556778888888888 8999999999963 11 1111 126666 4558899999999999999
Q ss_pred ecCH----HHHHHHHHcCCCEEEEecCCC-CC-------------CC---Cc----hhhHHHHHHHHHHhcCCCcEEEec
Q 018919 212 VLTA----EDARIAVQAGAAGIIVSNHGA-RQ-------------LD---YV----PATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 212 v~~~----~~a~~a~~~G~d~I~v~~~gg-~~-------------~~---~~----~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
.++. +.|+.+.++|+|+|+++|+-. +. .. +| +-++..+.++++.++.++|||+.|
T Consensus 169 ~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvG 248 (310)
T COG0167 169 APNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVG 248 (310)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEec
Confidence 8765 447889999999999998522 10 01 22 236788888888887789999999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 267 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 267 GI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
||.|++|+++.+.+||++|||||++++ .|+ .+++.+.++|.++|...|+++++|+.+..+
T Consensus 249 GI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp----~i~~~I~~~l~~~l~~~g~~si~d~iG~~~ 308 (310)
T COG0167 249 GIETGEDALEFILAGASAVQVGTALIY----KGP----GIVKEIIKGLARWLEEKGFESIQDIIGSAL 308 (310)
T ss_pred CcCcHHHHHHHHHcCCchheeeeeeee----eCc----hHHHHHHHHHHHHHHHcCCCCHHHHhchhc
Confidence 999999999999999999999999987 466 478899999999999999999999987654
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=202.57 Aligned_cols=141 Identities=26% Similarity=0.337 Sum_probs=118.9
Q ss_pred HHHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCC-----C-CCCCchhhHHHHHHHHHHh-------c
Q 018919 193 DEDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----R-QLDYVPATIMALEEVVKAT-------Q 257 (349)
Q Consensus 193 ~~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg-----~-~~~~~~~~~~~l~~i~~~~-------~ 257 (349)
.+.|+++|+.++ ++|++..+.++++++.++++|||+|.|++||| | +.+.|+|++.++.++++++ +
T Consensus 271 ~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g 350 (502)
T PRK07107 271 KRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETG 350 (502)
T ss_pred HHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcC
Confidence 577999999986 55666669999999999999999999999999 4 5678899999999998875 2
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh--------------------
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA-------------------- 297 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~-------------------- 297 (349)
.++|||+||||+++.|++|||++|||+||+|++|- +++++
T Consensus 351 ~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~~ 430 (502)
T PRK07107 351 VYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSFE 430 (502)
T ss_pred CcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccccC
Confidence 24999999999999999999999999999999883 22211
Q ss_pred cCHH-------HHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 298 EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 298 ~G~~-------gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
.|.+ .+.+++..+...|+..|.++|..+|.||+...
T Consensus 431 egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~~ 473 (502)
T PRK07107 431 EGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQKA 473 (502)
T ss_pred CccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhCC
Confidence 0110 27889999999999999999999999998553
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-22 Score=198.74 Aligned_cols=138 Identities=22% Similarity=0.322 Sum_probs=113.1
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC----CCCC--ch---hhHHHHHHHHHHhcCCCcE
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDY--VP---ATIMALEEVVKATQGRIPV 262 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~----~~~~--~~---~~~~~l~~i~~~~~~~ipv 262 (349)
|+.++++|+.+ +.+|+++++.+.++|+.|.++|||+|.+++|+|. +... |. .++..++++++.. ++||
T Consensus 277 ~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~--~vpV 354 (505)
T PLN02274 277 LEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH--GVPV 354 (505)
T ss_pred HHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc--CCeE
Confidence 89999999998 5899999999999999999999999999887663 2211 22 2455566666654 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEchHHHH--------------------HHhh-----c-----------------CH
Q 018919 263 FLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-----E-----------------GE 300 (349)
Q Consensus 263 ia~GGI~~~~dv~kal~~GA~~V~ig~~~l~--------------------~~~~-----~-----------------G~ 300 (349)
|++|||+++.|++|||++||++||+|+.|.- ++++ . |.
T Consensus 355 IadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~v~egv 434 (505)
T PLN02274 355 IADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKIAQGV 434 (505)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccccCCce
Confidence 9999999999999999999999999998842 2211 0 11
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 301 K-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 301 ~-------gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
+ .+.+++..+...|+..|.++|+.+|.||+..
T Consensus 435 ~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 435 SGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred EEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 1 2788999999999999999999999999866
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=190.42 Aligned_cols=248 Identities=25% Similarity=0.300 Sum_probs=192.1
Q ss_pred EcCeecCcceeecccccccccCChhhHHHHHHHHHcCC-eEEecCCCCC-C-----HHHHHh--hC--CCceEEEEeecC
Q 018919 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS-S-----VEEVAS--TG--PGIRFFQLYVYK 133 (349)
Q Consensus 65 l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~-~~~~~~~~~~-~-----~e~i~~--~~--~~~~~~Ql~~~~ 133 (349)
+....+..++++|||.+.+ |..++..+++.|. ..++++|.+. . -+.... .. ..+..+||++ +
T Consensus 4 ~~~~~~~~~~~lAPM~gvt------d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g-s 76 (323)
T COG0042 4 IGLIELRNRVILAPMAGVT------DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGG-S 76 (323)
T ss_pred cccccccCcEEEecCCCCc------cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecC-C
Confidence 4456678899999999875 7899999999999 8888887431 1 111111 11 2568999987 6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCC--CCCCch-HHHHHHHHHhcC-CcEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG--LDLGKM-DEDVKWLQTITK-LPILV 209 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~--~~~~~~-~~~i~~i~~~~~-~pv~v 209 (349)
+++.+.+.++.+++.|++.|.||++||.+ ++.....++ +.+|+. .+.|+.+++.++ +||.|
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~---------------~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTV 141 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSP---------------KVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTV 141 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChH---------------HhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEE
Confidence 88999999999999999999999999963 111111111 567888 788999999995 99999
Q ss_pred EEecC--------HHHHHHHHHcCCCEEEEecCCCC--CCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 018919 210 KGVLT--------AEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279 (349)
Q Consensus 210 K~v~~--------~~~a~~a~~~G~d~I~v~~~gg~--~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~ 279 (349)
|.... .+.++.+.++|++.++| ||.+ +.+.++..++.+.++++.++. +|||++|+|.+++|+.+.|+
T Consensus 142 KiRlG~d~~~~~~~~ia~~~~~~g~~~ltV--HgRtr~~~y~~~ad~~~I~~vk~~~~~-ipvi~NGdI~s~~~a~~~l~ 218 (323)
T COG0042 142 KIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQGYLGPADWDYIKELKEAVPS-IPVIANGDIKSLEDAKEMLE 218 (323)
T ss_pred EEecccCcccccHHHHHHHHHhcCCCEEEE--ecccHHhcCCCccCHHHHHHHHHhCCC-CeEEeCCCcCCHHHHHHHHH
Confidence 99732 35688899999999999 6654 556778899999999999843 99999999999999999999
Q ss_pred -hCCCEEEEch-----HHHHHH---hhcCH---HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceecc
Q 018919 280 -LGASGIFIGR-----PVVYSL---AAEGE---KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 337 (349)
Q Consensus 280 -~GA~~V~ig~-----~~l~~~---~~~G~---~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~ 337 (349)
.|+|+||+|| |+++.. ...|. ....+.++.+..+++.+....|...+..++++..+..
T Consensus 219 ~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~h~~~~~ 288 (323)
T COG0042 219 YTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRKHLGYYL 288 (323)
T ss_pred hhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 6899999999 445542 12233 4567888999999999999998777888887755443
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=199.12 Aligned_cols=145 Identities=26% Similarity=0.315 Sum_probs=119.6
Q ss_pred CCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhcC-C
Q 018919 189 LGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-R 259 (349)
Q Consensus 189 ~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~~-~ 259 (349)
++.. .+.++++|+.+ ++||++..+.+.+.++.+.++|||+|.|+..+|+. ...|.++...+.+++++... +
T Consensus 249 ~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~ 328 (475)
T TIGR01303 249 HQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLG 328 (475)
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcC
Confidence 3444 67799999987 79999988999999999999999999998877753 23578888888888765532 6
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH---------------------HHHhh---------------------
Q 018919 260 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVV---------------------YSLAA--------------------- 297 (349)
Q Consensus 260 ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l---------------------~~~~~--------------------- 297 (349)
+|||++|||+++.|++|||++||++||+|+.|- +++++
T Consensus 329 ~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~ 408 (475)
T TIGR01303 329 GHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKAL 408 (475)
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhcccc
Confidence 999999999999999999999999999999872 12211
Q ss_pred --cCHHH-----------HHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 298 --EGEKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 298 --~G~~g-----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
+|.+| +.+++..+...|+..|.++|+.+|.||+...
T Consensus 409 v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~ 457 (475)
T TIGR01303 409 FEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERA 457 (475)
T ss_pred ccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCC
Confidence 22222 6788999999999999999999999998664
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=198.76 Aligned_cols=138 Identities=30% Similarity=0.425 Sum_probs=116.1
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC-----C-CCCchhhHHHHHHHHHHhc-CCCcEEE
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----Q-LDYVPATIMALEEVVKATQ-GRIPVFL 264 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~-----~-~~~~~~~~~~l~~i~~~~~-~~ipvia 264 (349)
++.|+++|+.+ ++||+++.+.+.++++.+.++|||+|.++.++|. . ...|.|++..+.++++.+. .++|||+
T Consensus 253 ~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpvia 332 (450)
T TIGR01302 253 IDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIA 332 (450)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEE
Confidence 78899999995 8999999999999999999999999999865542 1 2357888999998887653 3799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh------------------------cCH
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------------EGE 300 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~------------------------~G~ 300 (349)
+|||+++.|++|||++||++||+|+.|. +++++ .|.
T Consensus 333 dGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~~ry~~~~~~~~~~~~egv 412 (450)
T TIGR01302 333 DGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKTKKFVPEGV 412 (450)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhccccccccccccccccccCCce
Confidence 9999999999999999999999999883 22211 111
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHcCCCChhhhc
Q 018919 301 -------KGVRRVLEMLREEFELAMALSGCRSLKEIT 330 (349)
Q Consensus 301 -------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~ 330 (349)
-.+.+++..+...|+..|.++|+.++.||+
T Consensus 413 ~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 449 (450)
T TIGR01302 413 EGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449 (450)
T ss_pred EEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence 137888999999999999999999999986
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=187.00 Aligned_cols=245 Identities=20% Similarity=0.232 Sum_probs=175.9
Q ss_pred cCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC-C-------HHHHHhhCC--CceEEEEeecCCh
Q 018919 66 LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-------VEEVASTGP--GIRFFQLYVYKDR 135 (349)
Q Consensus 66 ~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~-~-------~e~i~~~~~--~~~~~Ql~~~~~~ 135 (349)
.++++..|+++|||.+.+ +.++++.++++|..++++++-+. . ........+ .+..+||.+ .++
T Consensus 2 ~~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g-~~~ 74 (319)
T TIGR00737 2 GNIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFG-SDP 74 (319)
T ss_pred CCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeC-CCH
Confidence 467888999999998865 77999999999988888877321 1 111222222 578899987 688
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec-
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL- 213 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~- 213 (349)
+.+.+.+++++++|+++|+||+.||.. .+.+ .+. +... ..++++ .+.++.+++.+++||.+|...
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~-~~~~---~~~------Gs~l---~~~~~~~~ei~~~vr~~~~~pv~vKir~g 141 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVP-KITK---KGA------GSAL---LRDPDLIGKIVKAVVDAVDIPVTVKIRIG 141 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHH-HhcC---CCc------cchH---hCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 889999999999999999999999842 1111 000 0000 235667 788999999999999999852
Q ss_pred -------CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCCEE
Q 018919 214 -------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGI 285 (349)
Q Consensus 214 -------~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~~V 285 (349)
..+.++.+.++|+|.|++++....+...+++.++.+.++++.+ ++||+++|||++++|+.++++ .|||+|
T Consensus 142 ~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~~~~da~~~l~~~gad~V 219 (319)
T TIGR00737 142 WDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNGDIFSPEDAKAMLETTGCDGV 219 (319)
T ss_pred cCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHhhCCCEE
Confidence 2356788999999999995432222334567789999998887 699999999999999999995 799999
Q ss_pred EEchHHHH-----HHh----hcCH----HHHHHHHHHHHHHHHHHHHHcCCC-Chhhhccc
Q 018919 286 FIGRPVVY-----SLA----AEGE----KGVRRVLEMLREEFELAMALSGCR-SLKEITRD 332 (349)
Q Consensus 286 ~ig~~~l~-----~~~----~~G~----~gv~~~l~~l~~el~~~m~~~G~~-~i~~l~~~ 332 (349)
|+||+++. .-. ..|. ....+.++.+.++++......|.. .+..++++
T Consensus 220 migR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 280 (319)
T TIGR00737 220 MIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKH 280 (319)
T ss_pred EEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 99997763 111 1121 133456677777777777766643 35555544
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=184.57 Aligned_cols=240 Identities=18% Similarity=0.182 Sum_probs=170.2
Q ss_pred CcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCCC--------------------------C
Q 018919 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------S 112 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~~--------------------------~ 112 (349)
|++|+++|++|.+||++|.=.. + .+....+.+.+.|..+++ .|.+. .
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~-~-----~~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVY-C-----MTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCC-C-----CCHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 6799999999999999998321 1 133445557788877665 23221 0
Q ss_pred CH----HHHHhh---CC-CceEEEEeecCChhHHHHHHHHHHHcC-CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc
Q 018919 113 SV----EEVAST---GP-GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (349)
Q Consensus 113 ~~----e~i~~~---~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G-~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (349)
.+ +++.+. .+ .+.+.++.. .+.+.+.+.++.++++| +++|++|+.||.... . ..
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~G-~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~-~---------------~~ 137 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVVG-LSPEETHTILKKIQASDFNGLVELNLSCPNVPG-K---------------PQ 137 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEEe-CcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCC-c---------------cc
Confidence 12 222221 12 456777765 56777788899998888 999999999995310 0 00
Q ss_pred cCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH---HHHHHHH---HcCCCEEEEecCC--C--------CC-C-----C
Q 018919 184 FQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA---EDARIAV---QAGAAGIIVSNHG--A--------RQ-L-----D 240 (349)
Q Consensus 184 ~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~---~~a~~a~---~~G~d~I~v~~~g--g--------~~-~-----~ 240 (349)
. ..|++. .+.++++++.+++||++|..++. +.++.+. +.|+++|...|.- + +. . .
T Consensus 138 ~--g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~ 215 (310)
T PRK02506 138 I--AYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGF 215 (310)
T ss_pred c--ccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCC
Confidence 0 124555 67799999999999999997543 3343433 5567777666631 1 10 0 1
Q ss_pred ---Cc----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHH
Q 018919 241 ---YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 241 ---~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~e 313 (349)
+| +-.+..+.++++.++.++|||+.|||++++|++|+|.+||++||+|+++++ .|+ .++..+.+|
T Consensus 216 GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~----~gp----~~~~~i~~~ 287 (310)
T PRK02506 216 GGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK----EGP----AVFERLTKE 287 (310)
T ss_pred CcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH----hCh----HHHHHHHHH
Confidence 12 235677788888776679999999999999999999999999999999987 355 478899999
Q ss_pred HHHHHHHcCCCChhhhccc
Q 018919 314 FELAMALSGCRSLKEITRD 332 (349)
Q Consensus 314 l~~~m~~~G~~~i~~l~~~ 332 (349)
|+.+|...|+++++|+++.
T Consensus 288 L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 288 LKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred HHHHHHHhCCCCHHHHhCh
Confidence 9999999999999999873
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=184.68 Aligned_cols=220 Identities=18% Similarity=0.191 Sum_probs=160.2
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcC-CeEEecCCCCC--------CHHHHHh------hCC--CceEEEEeecCC
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWSTS--------SVEEVAS------TGP--GIRFFQLYVYKD 134 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G-~~~~~~~~~~~--------~~e~i~~------~~~--~~~~~Ql~~~~~ 134 (349)
+|+++|||++.+ +.++++.+.+.| ...++++|-+. ....+.. ..+ .+..+||++ .+
T Consensus 1 ~~~~lAPMag~t------d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g-~~ 73 (312)
T PRK10550 1 MRVLLAPMEGVL------DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLG-QY 73 (312)
T ss_pred CCeEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEecc-CC
Confidence 489999999876 779999999999 68888887331 1111111 122 578999997 68
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccC-C-CCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ-G-LDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~-~-~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
++.+.+.++++++.|++.|+||++||.+ +. .....+ + +.++++ .+.++.+++.+ ++||.+
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~--~v-------------~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsv 138 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK--TV-------------NGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTV 138 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch--HH-------------hcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEE
Confidence 9999999999999999999999999863 10 001100 0 346777 78899999988 499999
Q ss_pred EEecC-------HHHHHHHHHcCCCEEEEecCCCCCCCCchh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-h
Q 018919 210 KGVLT-------AEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-L 280 (349)
Q Consensus 210 K~v~~-------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~ 280 (349)
|.... .+.++.+.++|+|.|+|++....+.+.+++ .++.+.++++.+ ++|||++|||.|++|+.++++ .
T Consensus 139 KiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi~nGdI~t~~da~~~l~~~ 216 (312)
T PRK10550 139 KVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVIANGEIWDWQSAQQCMAIT 216 (312)
T ss_pred EEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEEEeCCcCCHHHHHHHHhcc
Confidence 98632 255788999999999995432224455654 789999999887 799999999999999999997 7
Q ss_pred CCCEEEEchHH-----HHHHhhcCH--HHHHHHHHHHHHHHH
Q 018919 281 GASGIFIGRPV-----VYSLAAEGE--KGVRRVLEMLREEFE 315 (349)
Q Consensus 281 GA~~V~ig~~~-----l~~~~~~G~--~gv~~~l~~l~~el~ 315 (349)
|||+|||||++ ++.....|. ....+.++.+.+.++
T Consensus 217 g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~ 258 (312)
T PRK10550 217 GCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTR 258 (312)
T ss_pred CCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHH
Confidence 99999999954 454332232 123345555555554
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=196.30 Aligned_cols=140 Identities=27% Similarity=0.415 Sum_probs=117.6
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEec-----CCCCCC-CCchhhHHHHHHHHHHhc-CCCcEEE
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQL-DYVPATIMALEEVVKATQ-GRIPVFL 264 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~-----~gg~~~-~~~~~~~~~l~~i~~~~~-~~ipvia 264 (349)
++.++++++++ ++||+++.+.+.++++.+.++|+|+|.++. +++++. .+|.|+++++.++++.++ .++|||+
T Consensus 257 l~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~via 336 (486)
T PRK05567 257 LDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIA 336 (486)
T ss_pred HHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEE
Confidence 67899999998 899999999999999999999999999853 333443 457889999999988764 3699999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh------------------------cCH
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------------EGE 300 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~------------------------~G~ 300 (349)
+|||+++.|++|||++|||+||+|++|- +++++ .|.
T Consensus 337 dGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g~ 416 (486)
T PRK05567 337 DGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEGI 416 (486)
T ss_pred cCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCce
Confidence 9999999999999999999999999883 22211 010
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 301 -------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 301 -------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
-.+.+++..+...|+..|.++|..+|+||+..
T Consensus 417 ~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 417 EGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 12788999999999999999999999999844
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=191.31 Aligned_cols=248 Identities=21% Similarity=0.258 Sum_probs=177.2
Q ss_pred CCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCC----C-C--------------------
Q 018919 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS----T-S-------------------- 112 (349)
Q Consensus 59 ~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~----~-~-------------------- 112 (349)
.|++|+++|++|++||++|.= .+... ...+.+.. +.|+.+++. |.+ + .
T Consensus 2 ~~L~~~~~Gl~l~nPv~~aag---~~~~~--~~~~~~~~-~~g~Gavv~kti~~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 2 ADLSITFCGIKSPNPFWLASA---PPTNK--YYNVARAF-EAGWGGVVWKTLGPPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred CCceEEECCEecCCCcEeCCc---CCCCC--HHHHHHHH-HhCCCEEEEeecCCCCCCCCCCeEEEecCCCcccccccCc
Confidence 478999999999999999972 12122 22334433 356554431 110 0 0
Q ss_pred ------CHHH----H---HhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCc
Q 018919 113 ------SVEE----V---ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (349)
Q Consensus 113 ------~~e~----i---~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~ 178 (349)
.++. + .+..+ .+.++|++...+++.+.+.++.+++.|+++|+||+.||+. ...+ +
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~-~~~~----------~ 144 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHG-MSER----------G 144 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-cccc----------C
Confidence 1121 1 11223 4568999875477888899999999999999999999962 0000 0
Q ss_pred CcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH----HHHHHHHHcCCCEEEEecC-CC----------------
Q 018919 179 LTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GA---------------- 236 (349)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~----~~a~~a~~~G~d~I~v~~~-gg---------------- 236 (349)
.+... ..+++. .+.++++++.+++||++|+..+. +.++.+.++|+|+|++.|+ .+
T Consensus 145 ~g~~~---~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~ 221 (420)
T PRK08318 145 MGSAV---GQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVN 221 (420)
T ss_pred Ccccc---cCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceec
Confidence 00000 235666 67899999988999999998543 6678899999999998764 11
Q ss_pred -C---CCCCchh----hHHHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHH
Q 018919 237 -R---QLDYVPA----TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVL 307 (349)
Q Consensus 237 -~---~~~~~~~----~~~~l~~i~~~~~-~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l 307 (349)
+ +..+|++ +++.+.++++.++ .++|||++|||.+++|++++|.+|||+|||||++++ .|. .++
T Consensus 222 ~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~----~gp----~ii 293 (420)
T PRK08318 222 GKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ----YGF----RIV 293 (420)
T ss_pred CCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc----CCc----hhH
Confidence 1 1123444 5788888888764 279999999999999999999999999999999886 355 367
Q ss_pred HHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 308 EMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 308 ~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
..+.+||+.+|...|+.+++++.+..+
T Consensus 294 ~~I~~~L~~~l~~~g~~si~e~iG~~~ 320 (420)
T PRK08318 294 EDMISGLSHYMDEKGFASLEDMVGLAV 320 (420)
T ss_pred HHHHHHHHHHHHHcCcchHHHHhcccc
Confidence 889999999999999999999986544
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=183.68 Aligned_cols=214 Identities=22% Similarity=0.270 Sum_probs=152.8
Q ss_pred CcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCCC--------------------------
Q 018919 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS-------------------------- 112 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~~-------------------------- 112 (349)
|++|+++|+++++||++|+ +..+ .+....+.+.+.|+.+++. +.+..
T Consensus 1 ~l~~~~~Gl~l~nPi~~aa-g~~~-----~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLAS-APPT-----TSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred CCceEECCEEcCCCCEeCC-cCCC-----CCHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 6799999999999999999 3211 1233444444557655542 21110
Q ss_pred -------CHHH----HH---hhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC
Q 018919 113 -------SVEE----VA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (349)
Q Consensus 113 -------~~e~----i~---~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~ 177 (349)
.++. +. +..+ .+.+.|++...+++.+.+.++++++.|+++|++|++||..-.+ .
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~-----------~ 143 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPE-----------R 143 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCC-----------C
Confidence 0111 11 1122 4678999875488888899999988999999999999964100 0
Q ss_pred cCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH----HHHHHHHHcCCCEEEEecCC-C---------------
Q 018919 178 FLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHG-A--------------- 236 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~----~~a~~a~~~G~d~I~v~~~g-g--------------- 236 (349)
+.+... ..+++. .+.++++++.+++||++|+..+. +.++.+.++|+|+|+++|+. +
T Consensus 144 ~~G~~l---~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~ 220 (299)
T cd02940 144 GMGAAV---GQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGV 220 (299)
T ss_pred CCchhh---ccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccc
Confidence 000000 235666 67799999989999999987543 67888999999999988752 1
Q ss_pred --C---CCCCch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 237 --R---QLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 237 --~---~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+ +..+|+ .+++.+.++++.+++++|||++|||++++|+.++|.+|||+||+||++++
T Consensus 221 ~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 221 EGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred cCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 0 112333 34889999999886579999999999999999999999999999999886
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=184.90 Aligned_cols=236 Identities=18% Similarity=0.239 Sum_probs=165.7
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCC-eEEecCCCCC------CHHHHHhhCC--CceEEEEeecCChhHHHHHHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~-~~~~~~~~~~------~~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~ 143 (349)
|+++|||.+.+ +.+++..++++|. ..++++|.+. ...+.....+ .+..+||++ .|++...+.++
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g-~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGG-SDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEcc-CCHHHHHHHHH
Confidence 79999999876 7799999999998 6788887431 1122222223 678999987 68999999999
Q ss_pred HHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC--------
Q 018919 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT-------- 214 (349)
Q Consensus 144 ~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~-------- 214 (349)
.+++.|+++|+||++||..-.+ +.++ +..- +.+|++ .+.++.+++.+++||.+|....
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~v~----~~g~------Gs~L---l~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~ 141 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDRVQ----NGNF------GACL---MGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYE 141 (318)
T ss_pred HHHhCCCCEEEEECCCCHHHhC----CCCe------ehHh---hcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHH
Confidence 9999999999999999963100 0000 1000 346777 7789999999999999999742
Q ss_pred --HHHHHHHHHcCCCEEEEecCCCCC---CCC-------chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 215 --AEDARIAVQAGAAGIIVSNHGARQ---LDY-------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 215 --~~~a~~a~~~G~d~I~v~~~gg~~---~~~-------~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
.+.++.+.++|+|.|+| ||++. ... .+..++.+.++++.+. ++|||++|||++.+|+.+++. ||
T Consensus 142 ~~~~~~~~l~~~G~~~itv--HgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipVi~NGdI~s~~da~~~l~-g~ 217 (318)
T TIGR00742 142 FLCDFVEIVSGKGCQNFIV--HARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTIEINGGIKNSEQIKQHLS-HV 217 (318)
T ss_pred HHHHHHHHHHHcCCCEEEE--eCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcEEEECCcCCHHHHHHHHh-CC
Confidence 13378889999999999 55541 111 2336788888887763 699999999999999999996 99
Q ss_pred CEEEEchHH-----HHHHhh----cC---HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 283 SGIFIGRPV-----VYSLAA----EG---EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 283 ~~V~ig~~~-----l~~~~~----~G---~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
|+|||||++ ++.... +| .....+.++.+.++++..... ...+.+++++..
T Consensus 218 dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~rk~~~ 279 (318)
T TIGR00742 218 DGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ--GLSLNHITRHLL 279 (318)
T ss_pred CEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHH
Confidence 999999954 443221 11 112345556666666654332 234556655543
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-21 Score=183.27 Aligned_cols=248 Identities=26% Similarity=0.322 Sum_probs=154.0
Q ss_pred eecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHH
Q 018919 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (349)
Q Consensus 68 ~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~ 147 (349)
.+++.||++++|+++++ .++...++++++...|+....++.. .+.++.... ....++|+ .........+.+
T Consensus 62 ~~l~~p~~is~MS~GaL-S~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~~-~~~~I~Q~-~sg~fGv~~~~l----- 132 (368)
T PF01645_consen 62 LELSIPFMISAMSYGAL-SEEAKEALAKGANMAGTASNTGEGG-ELPEERKAA-KDLRIKQI-ASGRFGVRPEYL----- 132 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB--TTSSEEEE--TT-TT--HHHH-----
T ss_pred hhheeeeecccCChhhc-CHHHHHHHHHHHHHhCceEecCCCC-CCHHHhccc-CCceEEEc-CCCCCCCCHHHh-----
Confidence 45789999999999976 4567889999999999998888764 344433222 22237896 333344443333
Q ss_pred cCCCEEEEecCC---CCCC-----chh-HHhhhhcCCCCcCcc---cccCCCCCCch-HHHHHHHHHhc-CCcEEEEEec
Q 018919 148 AGFKAIALTVDT---PRLG-----RRE-ADIKNRFTLPPFLTL---KNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVL 213 (349)
Q Consensus 148 ~G~~~i~i~~d~---p~~g-----~r~-~d~~~~~~~p~~~~~---~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~ 213 (349)
..+++|+|.+.. |..| .+. .+++.-..++++.+. +...++.+++. .+.|+++|+.+ +.||.+|.+.
T Consensus 133 ~~a~~iEIKigQGAKpG~GG~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~ 212 (368)
T PF01645_consen 133 KQADMIEIKIGQGAKPGEGGHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVA 212 (368)
T ss_dssp CC-SEEEEE---TTSTTT--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-
T ss_pred cCCCeEEEEEecCccccCcceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECC
Confidence 357899988864 2211 111 112222223433332 22222344444 56699999998 8999999984
Q ss_pred C--HHHHHH-HHHcCCCEEEEecC-CCCC-------CCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHH
Q 018919 214 T--AEDARI-AVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKA 277 (349)
Q Consensus 214 ~--~~~a~~-a~~~G~d~I~v~~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~ka 277 (349)
. .++... +.++|+|+|+++++ ||+. .+.|.|....|.++.+.+ ++++.++++||++++.|++|+
T Consensus 213 ~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~ka 292 (368)
T PF01645_consen 213 GRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKA 292 (368)
T ss_dssp STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHH
T ss_pred CCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHH
Confidence 3 344444 89999999999986 4442 235778888888888875 357999999999999999999
Q ss_pred HHhCCCEEEEchHHHHHHhhc-----------------------------CHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 278 LALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 278 l~~GA~~V~ig~~~l~~~~~~-----------------------------G~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
+++|||+|.+||++|+++.|. +.+.|.++++.+.+|++..|+.+|.+
T Consensus 293 laLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el~~~~~a~G~~ 368 (368)
T PF01645_consen 293 LALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEELREILAALGKR 368 (368)
T ss_dssp HHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred HhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999988652 34679999999999999999999964
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-20 Score=177.48 Aligned_cols=232 Identities=18% Similarity=0.228 Sum_probs=162.4
Q ss_pred CCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCCCC----------------------
Q 018919 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS---------------------- 112 (349)
Q Consensus 56 ~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~~~---------------------- 112 (349)
.++++++|+++|+++.+||++|. +.. .+....+.+.+.|..+++ .|.+..
T Consensus 44 ~~~~~L~~~~~Gl~l~nPi~~As-G~~------~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~ 116 (344)
T PRK05286 44 YTDPRLPVTVMGLTFPNPVGLAA-GFD------KNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR 116 (344)
T ss_pred CCCCCCceEECCEECCCCCEECC-CCC------CChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccC
Confidence 45788999999999999999877 321 233556668888888765 232210
Q ss_pred ------CH----HHHHhhC-CCceEEEEeecC------ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCC
Q 018919 113 ------SV----EEVASTG-PGIRFFQLYVYK------DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL 175 (349)
Q Consensus 113 ------~~----e~i~~~~-~~~~~~Ql~~~~------~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~ 175 (349)
.+ +++.+.. ..+.++++.... ..+...+.++++.+ +++++++|+.||....
T Consensus 117 ~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g----------- 184 (344)
T PRK05286 117 MGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPG----------- 184 (344)
T ss_pred CCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCC-----------
Confidence 01 2222221 134677875431 22334444444433 5999999999996410
Q ss_pred CCcCcccccCCCCCCch-HHHHHHHHHhcC-----CcEEEEEecC------HHHHHHHHHcCCCEEEEecCCC-------
Q 018919 176 PPFLTLKNFQGLDLGKM-DEDVKWLQTITK-----LPILVKGVLT------AEDARIAVQAGAAGIIVSNHGA------- 236 (349)
Q Consensus 176 p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~-----~pv~vK~v~~------~~~a~~a~~~G~d~I~v~~~gg------- 236 (349)
.+. ..+++. .+.++++|+.++ +||++|+..+ .+.++.+.++|+|+|+++|+-.
T Consensus 185 -----~~~---~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~ 256 (344)
T PRK05286 185 -----LRD---LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKG 256 (344)
T ss_pred -----ccc---ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccc
Confidence 000 124555 677999999887 9999999743 2457888999999999988421
Q ss_pred ------CCCCCchh----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHH
Q 018919 237 ------RQLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 306 (349)
Q Consensus 237 ------~~~~~~~~----~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~ 306 (349)
++..+|++ .++.+.++++.+++++|||++|||++++|+.+++.+|||+||+||++++ +|+ .+
T Consensus 257 ~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~----~gP----~~ 328 (344)
T PRK05286 257 LPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIY----EGP----GL 328 (344)
T ss_pred cccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHH----hCc----hH
Confidence 01112333 5678888888876679999999999999999999999999999999986 255 36
Q ss_pred HHHHHHHHHHHHHHcC
Q 018919 307 LEMLREEFELAMALSG 322 (349)
Q Consensus 307 l~~l~~el~~~m~~~G 322 (349)
++.+++||+.+|...|
T Consensus 329 ~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 329 VKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7789999999998765
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=171.37 Aligned_cols=222 Identities=18% Similarity=0.100 Sum_probs=154.3
Q ss_pred eeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCC--------------------------CC--
Q 018919 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------SS-- 113 (349)
Q Consensus 63 ~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~--------------------------~~-- 113 (349)
++++|++|++||++|+=.. +.+....+.+.+.|..+++. |... ..
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~------~~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPW------CTTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCCC------CCCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 5788999999999998321 23445566666688877652 2211 01
Q ss_pred --HHHHHhh------CCCceEEEEeecCChhHHHHHHHHHHHc---CCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc
Q 018919 114 --VEEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (349)
Q Consensus 114 --~e~i~~~------~~~~~~~Ql~~~~~~~~~~~~~~~~~~~---G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~ 182 (349)
++++.+. ...+.++|+... ++...+.++++++. |+++|++|+.||+.... .
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~----------------~ 136 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK----------------P 136 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCCCCc----------------c
Confidence 2223221 125678998764 67777888888775 79999999999963100 0
Q ss_pred ccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH------HHHHHHHHc--CCCEEEEecCCC---------CC------
Q 018919 183 NFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA------EDARIAVQA--GAAGIIVSNHGA---------RQ------ 238 (349)
Q Consensus 183 ~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~------~~a~~a~~~--G~d~I~v~~~gg---------~~------ 238 (349)
.. ..+++. .+.++++++.+++||++|+.... +.++.+.++ |+|+|++.|+-+ +.
T Consensus 137 ~~--~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~ 214 (294)
T cd04741 137 PP--AYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPK 214 (294)
T ss_pred cc--cCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCC
Confidence 00 125566 67899999999999999997432 334556677 999999876421 11
Q ss_pred -CCCchh-------hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHH
Q 018919 239 -LDYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 310 (349)
Q Consensus 239 -~~~~~~-------~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l 310 (349)
..+|.+ .+..+.++++.++.++|||++|||.+++|+++++.+|||+||+||++++ .|+ .+++.+
T Consensus 215 ~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~----~gp----~~~~~i 286 (294)
T cd04741 215 TGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK----EGP----KVFARI 286 (294)
T ss_pred CCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh----cCc----hHHHHH
Confidence 112222 4566677777775569999999999999999999999999999999986 255 366778
Q ss_pred HHHHHHHH
Q 018919 311 REEFELAM 318 (349)
Q Consensus 311 ~~el~~~m 318 (349)
.+||+.+|
T Consensus 287 ~~~L~~~~ 294 (294)
T cd04741 287 EKELEDIW 294 (294)
T ss_pred HHHHHhhC
Confidence 88888764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=180.66 Aligned_cols=141 Identities=29% Similarity=0.362 Sum_probs=116.6
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC----C--CCCchhhHHHHHHHHHHhcC-CCcEEE
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQG-RIPVFL 264 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~----~--~~~~~~~~~~l~~i~~~~~~-~ipvia 264 (349)
++.+++||+++ +++|++..+.|.+.++.+.++|||+|.|.-..|. + ...+.|++.++.+++++... ++|||+
T Consensus 256 ~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via 335 (479)
T PRK07807 256 LEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWA 335 (479)
T ss_pred HHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEe
Confidence 78899999998 7999999999999999999999999998654442 1 12467899999999886543 799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHHH---------------------HHhh-----------------------cCH
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVVY---------------------SLAA-----------------------EGE 300 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l~---------------------~~~~-----------------------~G~ 300 (349)
+|||+++.|+.|+|++||++||+|+.|.- ++++ .|.
T Consensus 336 ~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~eGv 415 (479)
T PRK07807 336 DGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFEEGI 415 (479)
T ss_pred cCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCCCCc
Confidence 99999999999999999999999998831 1110 121
Q ss_pred HH-----------HHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 301 KG-----------VRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 301 ~g-----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
++ +..++..+...|+..|.++|..+|+||+...
T Consensus 416 ~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~~ 459 (479)
T PRK07807 416 STSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHERA 459 (479)
T ss_pred cceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhCC
Confidence 11 6778999999999999999999999998663
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=172.97 Aligned_cols=242 Identities=20% Similarity=0.215 Sum_probs=168.6
Q ss_pred ecCcceeecccccccccCChhhHHHHHHHHHcCC-eEEecCCCCC------CHHHHHhhCC--CceEEEEeecCChhHHH
Q 018919 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVA 139 (349)
Q Consensus 69 ~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~-~~~~~~~~~~------~~e~i~~~~~--~~~~~Ql~~~~~~~~~~ 139 (349)
....|+++|||.+.+ +.+++..+++.|. ..++++|-+. .........+ .+..+||++ .|++...
T Consensus 8 ~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g-~~p~~~~ 80 (333)
T PRK11815 8 LPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGG-SDPADLA 80 (333)
T ss_pred CCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeC-CCHHHHH
Confidence 345799999999876 7799999999997 6778877321 1122222223 678999987 6899999
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC----
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT---- 214 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~---- 214 (349)
+.+++++++|+++|+||++||..-.|. .++ +... ..++++ .+.++.+++.+++||.+|....
T Consensus 81 ~aA~~~~~~g~d~IdlN~gCP~~~v~~----~~~------Gs~L---~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~ 147 (333)
T PRK11815 81 EAAKLAEDWGYDEINLNVGCPSDRVQN----GRF------GACL---MAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQ 147 (333)
T ss_pred HHHHHHHhcCCCEEEEcCCCCHHHccC----CCe------eeHH---hcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCC
Confidence 999999999999999999998642111 011 0000 346777 7889999999999999998521
Q ss_pred ------HHHHHHHHHcCCCEEEEecCCC-CCCCC-------chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh
Q 018919 215 ------AEDARIAVQAGAAGIIVSNHGA-RQLDY-------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 215 ------~~~a~~a~~~G~d~I~v~~~gg-~~~~~-------~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~ 280 (349)
.+.++.+.++|+|+|++++..+ .+... .+..++.+.++++.+. ++|||++|||++++|+.++++
T Consensus 148 ~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~iPVI~nGgI~s~eda~~~l~- 225 (333)
T PRK11815 148 DSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP-HLTIEINGGIKTLEEAKEHLQ- 225 (333)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC-CCeEEEECCcCCHHHHHHHHh-
Confidence 2446788899999999953211 11111 2345788888877642 699999999999999999987
Q ss_pred CCCEEEEchHHHH-----HHhh---cCH----HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 281 GASGIFIGRPVVY-----SLAA---EGE----KGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 281 GA~~V~ig~~~l~-----~~~~---~G~----~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
|||+|||||+++. .... .|. ....+.++.+.++++..... |. .+..++++..
T Consensus 226 ~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~rk~~~ 289 (333)
T PRK11815 226 HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-GG-RLNHITRHML 289 (333)
T ss_pred cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-hHHHHHHHHH
Confidence 7999999997653 2211 122 12445666677777666553 43 4666665543
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-19 Score=170.92 Aligned_cols=248 Identities=21% Similarity=0.254 Sum_probs=163.1
Q ss_pred chHHHHHHHhhccccccccccc-CCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCC
Q 018919 32 DQWTLQENRNAFSRILFRPRIL-IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSW 109 (349)
Q Consensus 32 ~~~t~~~n~~~~~~~~l~p~~l-~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~ 109 (349)
-|.+++-....+.-+...|-.. ....+.|++|+++|+++.+||++|. +. .. +....+.+.+.|..+++ .|.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As-G~----~~--~~~~~~~~~~~G~Gavv~kti 81 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA-GF----DK--NAEAIDALLALGFGFVEVGTV 81 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc-CC----CC--CHHHHHHHHHCCCcEEEEecc
Confidence 3455555555565555555322 4567889999999999999999876 32 12 33445555578877664 222
Q ss_pred CCC----------------------------C----HHHHHhhC--CCceEEEEeecCC---hhHHHHHHHHHHHc--CC
Q 018919 110 STS----------------------------S----VEEVASTG--PGIRFFQLYVYKD---RNVVAQLVRRAERA--GF 150 (349)
Q Consensus 110 ~~~----------------------------~----~e~i~~~~--~~~~~~Ql~~~~~---~~~~~~~~~~~~~~--G~ 150 (349)
+.. . ++++.+.. ..+.++|+..... .+...+.++.++++ ++
T Consensus 82 t~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~a 161 (327)
T cd04738 82 TPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYA 161 (327)
T ss_pred CCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhC
Confidence 110 1 12233222 2567889866421 12233444444443 49
Q ss_pred CEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcC-----CcEEEEEecC------HHHH
Q 018919 151 KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITK-----LPILVKGVLT------AEDA 218 (349)
Q Consensus 151 ~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~-----~pv~vK~v~~------~~~a 218 (349)
+++++|+.||.... .+. ..+++. .+.++++|+.++ +||++|.... .+.+
T Consensus 162 d~ielN~scP~~~g----------------~~~---~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia 222 (327)
T cd04738 162 DYLVVNVSSPNTPG----------------LRD---LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIA 222 (327)
T ss_pred CEEEEECCCCCCCc----------------ccc---ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHH
Confidence 99999999996310 000 235555 567999998886 9999999742 2457
Q ss_pred HHHHHcCCCEEEEecCCC-------------CCCCCch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC
Q 018919 219 RIAVQAGAAGIIVSNHGA-------------RQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 219 ~~a~~~G~d~I~v~~~gg-------------~~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G 281 (349)
+.+.++|+|+|+++|+-. .+..+|+ .+++.+.++++.++.++||+++|||++++|+.+++.+|
T Consensus 223 ~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aG 302 (327)
T cd04738 223 DVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAG 302 (327)
T ss_pred HHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcC
Confidence 888999999999987411 0011232 34788888888876679999999999999999999999
Q ss_pred CCEEEEchHHHHHHhhcCHHHHHHHHHHHHHH
Q 018919 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 282 A~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~e 313 (349)
||+||+||++++ +|+. ++..+.+|
T Consensus 303 Ad~V~vg~~~~~----~gP~----~~~~i~~~ 326 (327)
T cd04738 303 ASLVQLYTGLVY----EGPG----LVKRIKRE 326 (327)
T ss_pred CCHHhccHHHHh----hCcH----HHHHHHhc
Confidence 999999999986 3553 44455544
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=179.52 Aligned_cols=240 Identities=25% Similarity=0.324 Sum_probs=154.8
Q ss_pred eecccccccccCChhhHHHHHHHHHcCCe-EEecCCCCC-----C---HHHHHhhCC--CceEEEEeecCChhHHHHHHH
Q 018919 75 MIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWSTS-----S---VEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (349)
Q Consensus 75 ~iApm~~~~l~~~~~~~~la~aa~~~G~~-~~~~~~~~~-----~---~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~ 143 (349)
++|||.+.+ +.+++..+.+.|.. .+++++.+. . ........+ .+..+||++ +|++...+.++
T Consensus 1 ~LAPM~g~t------d~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g-~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGVT------DLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFG-NDPEDLAEAAE 73 (309)
T ss_dssp -E---TTTS------SHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCCc------hHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEee-ccHHHHHHHHH
Confidence 589998865 78999999999999 888887431 1 111111223 578999987 78999999998
Q ss_pred HHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec--------C
Q 018919 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL--------T 214 (349)
Q Consensus 144 ~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~--------~ 214 (349)
.+.+.|+++|.||++||.+ +. .+.+ .+..- +.+|+. .+.|+.+++.+++||.+|... +
T Consensus 74 ~~~~~~~~~IDlN~GCP~~--~v--~~~g------~Ga~L---l~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~ 140 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP--KV--TKGG------AGAAL---LKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEET 140 (309)
T ss_dssp HHCCTT-SEEEEEE---SH--HH--HHCT-------GGGG---GC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHH
T ss_pred hhhccCCcEEeccCCCCHH--HH--hcCC------cChhh---hcChHHhhHHHHhhhcccccceEEecccccccchhHH
Confidence 8888899999999999963 11 1111 11111 356776 778999999999999999973 2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCCEEEEch----
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGR---- 289 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~~V~ig~---- 289 (349)
.+.++.+.++|+++|+|++....|.+.+++.|+.+.++++.+ ++|||++|||.|.+|+.+.+. .|+|+|||||
T Consensus 141 ~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~ 218 (309)
T PF01207_consen 141 IEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALG 218 (309)
T ss_dssp HHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC
T ss_pred HHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhh
Confidence 356889999999999995444446677899999999999988 699999999999999999998 5999999999
Q ss_pred -HHHHHH---hhcCH----HHHHHHHHHHHHHHHHHHHHcCC-CChhhhcccceec
Q 018919 290 -PVVYSL---AAEGE----KGVRRVLEMLREEFELAMALSGC-RSLKEITRDHIVT 336 (349)
Q Consensus 290 -~~l~~~---~~~G~----~gv~~~l~~l~~el~~~m~~~G~-~~i~~l~~~~l~~ 336 (349)
||+|.. ...|. ..+.+.++.+.++++.+....|. ..+..++++..+.
T Consensus 219 nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y 274 (309)
T PF01207_consen 219 NPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWY 274 (309)
T ss_dssp -CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCC
T ss_pred cCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 556641 11111 11456677778888877777763 4566666665443
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-18 Score=160.83 Aligned_cols=206 Identities=23% Similarity=0.304 Sum_probs=149.2
Q ss_pred eeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCCC-----------------------------
Q 018919 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS----------------------------- 112 (349)
Q Consensus 63 ~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~~----------------------------- 112 (349)
|+++|+++++||++|.-... .+..+.+.+.+.|..+++. |.+..
T Consensus 1 ~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLL------KTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 57899999999999995331 2456777788888776652 22110
Q ss_pred ------CHH----HHHhh--C-C-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCc
Q 018919 113 ------SVE----EVAST--G-P-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (349)
Q Consensus 113 ------~~e----~i~~~--~-~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~ 178 (349)
.++ ++.+. . + .+.++|+.. .+++...+.++.+++.|+++|++|++||.....
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~------------- 140 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGGG------------- 140 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-------------
Confidence 111 22221 1 2 567889876 477888889999999999999999999863210
Q ss_pred CcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec--C----HHHHHHHHHcCCCEEEEecCC-CCC------------
Q 018919 179 LTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL--T----AEDARIAVQAGAAGIIVSNHG-ARQ------------ 238 (349)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~--~----~~~a~~a~~~G~d~I~v~~~g-g~~------------ 238 (349)
+.. ..++++ .+.++++|+.+++||++|... + .+.++.+.++|+|+|+++|+- ++.
T Consensus 141 ---~~~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~ 215 (289)
T cd02810 141 ---RQL--GQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKR 215 (289)
T ss_pred ---ccc--ccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCC
Confidence 000 124555 677999999889999999863 3 356788999999999998741 110
Q ss_pred CC---Cch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 239 LD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 239 ~~---~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.. .|+ ..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||+++.
T Consensus 216 ~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 216 GTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred CCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 01 122 24677888888775479999999999999999999999999999999986
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-19 Score=169.15 Aligned_cols=145 Identities=26% Similarity=0.354 Sum_probs=116.4
Q ss_pred CCCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC----C--CCCchhhHHHHHHHHHHhcC-
Q 018919 188 DLGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQG- 258 (349)
Q Consensus 188 ~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~----~--~~~~~~~~~~l~~i~~~~~~- 258 (349)
.+..+ .+.|+|+|+.+ .+.||...+.+.+.|+.++++|||++.|.-..|. | ...|.|+..++.++++....
T Consensus 274 GnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~ 353 (503)
T KOG2550|consen 274 GNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQF 353 (503)
T ss_pred CcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhc
Confidence 34556 89999999998 6789999999999999999999999999754442 2 34567777777777765532
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH--------------------HHHHhh---------------------
Q 018919 259 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPV--------------------VYSLAA--------------------- 297 (349)
Q Consensus 259 ~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~--------------------l~~~~~--------------------- 297 (349)
.+|||+||||++..+++|||.+||++||+|.-+ +++++.
T Consensus 354 gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s~~rY~~e~dkvki 433 (503)
T KOG2550|consen 354 GVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVDKVKI 433 (503)
T ss_pred CCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhhhhccccccceEee
Confidence 799999999999999999999999999999844 122210
Q ss_pred -cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 298 -EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 298 -~G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
+|. -.+.+++..+...++..++..|++++++++..
T Consensus 434 AQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 434 AQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREM 476 (503)
T ss_pred ccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 111 13788999999999999999999999999754
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=163.76 Aligned_cols=207 Identities=19% Similarity=0.242 Sum_probs=138.9
Q ss_pred cceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCCCC---------------------------
Q 018919 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS--------------------------- 112 (349)
Q Consensus 61 ~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~~~--------------------------- 112 (349)
++|+++|+++.+||++|. +. +. +....+...+.|..+++ .|.+..
T Consensus 46 L~~~~~Gl~l~NPi~lAs-G~----~~--~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n 118 (335)
T TIGR01036 46 LEVTVLGLKFPNPLGLAA-GF----DK--DGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNN 118 (335)
T ss_pred CcEEECCEECCCCcEeCC-cc----CC--CHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCC
Confidence 899999999999999965 32 22 33466666777877765 232210
Q ss_pred -CH----HHHHhhCC-CceEEEEeecC---ChhHHHHHHHHHHHcC--CCEEEEecCCCCCCchhHHhhhhcCCCCcCcc
Q 018919 113 -SV----EEVASTGP-GIRFFQLYVYK---DRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTL 181 (349)
Q Consensus 113 -~~----e~i~~~~~-~~~~~Ql~~~~---~~~~~~~~~~~~~~~G--~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~ 181 (349)
.+ +++.+... .+.++.+..+. ..+...+.++.+++.+ ++++++|+.||... + .
T Consensus 119 ~G~~~~l~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~--------------~--~ 182 (335)
T TIGR01036 119 HGADVLVERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP--------------G--L 182 (335)
T ss_pred hhHHHHHHHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC--------------C--c
Confidence 01 12222111 34556654332 1122345555555544 99999999998531 0 0
Q ss_pred cccCCCCCCch-HHHHHHHHHhcC-------CcEEEEEecC------HHHHHHHHHcCCCEEEEecCCC-----------
Q 018919 182 KNFQGLDLGKM-DEDVKWLQTITK-------LPILVKGVLT------AEDARIAVQAGAAGIIVSNHGA----------- 236 (349)
Q Consensus 182 ~~~~~~~~~~~-~~~i~~i~~~~~-------~pv~vK~v~~------~~~a~~a~~~G~d~I~v~~~gg----------- 236 (349)
+. ..+++. .+.++++++.++ +||++|...+ .+.|+.+.++|+|+|++.|+-.
T Consensus 183 ~~---~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~ 259 (335)
T TIGR01036 183 RD---LQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNS 259 (335)
T ss_pred cc---ccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCcccc
Confidence 11 234555 566888888776 9999999753 2457889999999999998521
Q ss_pred --CCCCCchh----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 237 --RQLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 237 --~~~~~~~~----~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
...-+|++ .+..+.++++.+++++|||+.|||.+++|+.++|.+||++|++||++++
T Consensus 260 ~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 260 DETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 00112332 4567777777776679999999999999999999999999999999986
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-18 Score=166.00 Aligned_cols=257 Identities=22% Similarity=0.216 Sum_probs=179.3
Q ss_pred eecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHH
Q 018919 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (349)
Q Consensus 68 ~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~ 147 (349)
..+..||.++.|+++++ .++...++|+++.+.|+.+..++.+- +++.. ...+..+.|+- +.....+.+.+
T Consensus 163 ~~i~~~~~~~aMS~GAl-S~eA~~alA~a~~~~G~~sntGEGGe-~~~~~--~~~~s~I~Qva-SGRFGV~~~yL----- 232 (485)
T COG0069 163 LELKKRFVTGAMSFGAL-SKEAHEALARAMNRIGTKSNTGEGGE-DPERY--EDGRSAIKQVA-SGRFGVTPEYL----- 232 (485)
T ss_pred ceeeecccccccCCccc-cHHHHHHHHHHHHHhcCcccCCCCCC-CHHHh--ccccceEEEec-cccCccCHHHh-----
Confidence 56678999999999987 45678899999999999887776653 44433 12245678853 33444444433
Q ss_pred cCCCEEEEecCC---CCCC-----chh-HHhhhhcCCCCcCccccc---CCCCCCch-HHHHHHHHHhc-CCcEEEEEec
Q 018919 148 AGFKAIALTVDT---PRLG-----RRE-ADIKNRFTLPPFLTLKNF---QGLDLGKM-DEDVKWLQTIT-KLPILVKGVL 213 (349)
Q Consensus 148 ~G~~~i~i~~d~---p~~g-----~r~-~d~~~~~~~p~~~~~~~~---~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~ 213 (349)
..+++|+|-+.. |..| .+. ..+...-.+|++++.-.. ....+++. ...|..+|+.. ..+|.||.+.
T Consensus 233 ~~a~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva 312 (485)
T COG0069 233 ANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVA 312 (485)
T ss_pred CccceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 346677777753 2111 111 111111123444432111 11222222 34477777765 4679999984
Q ss_pred --CHHHHHH-HHHcCCCEEEEecC-CCCC-------CCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHH
Q 018919 214 --TAEDARI-AVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKA 277 (349)
Q Consensus 214 --~~~~a~~-a~~~G~d~I~v~~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~ka 277 (349)
..+.+.. +.+++||.|+|+++ ||+. ...|.|....|.++.+.+ ++++.|+++||++|+.||+|+
T Consensus 313 ~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka 392 (485)
T COG0069 313 EHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKA 392 (485)
T ss_pred ccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHH
Confidence 3455544 89999999999997 4542 235777777788887765 467999999999999999999
Q ss_pred HHhCCCEEEEchHHHHHHhhc-----------------------------CHHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 018919 278 LALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREEFELAMALSGCRSLKE 328 (349)
Q Consensus 278 l~~GA~~V~ig~~~l~~~~~~-----------------------------G~~gv~~~l~~l~~el~~~m~~~G~~~i~~ 328 (349)
++||||.|.+||+.+.++.|. .++.|.+++..+.+|++.+|+.+|.+++++
T Consensus 393 ~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~~~l~e 472 (485)
T COG0069 393 AALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKRSLSE 472 (485)
T ss_pred HHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999988651 357899999999999999999999999999
Q ss_pred hcccce
Q 018919 329 ITRDHI 334 (349)
Q Consensus 329 l~~~~l 334 (349)
|.++..
T Consensus 473 l~g~~d 478 (485)
T COG0069 473 LIGRTD 478 (485)
T ss_pred Hhcchh
Confidence 996543
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=155.54 Aligned_cols=199 Identities=21% Similarity=0.249 Sum_probs=147.0
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC-C-----HH--HHHhhCC--CceEEEEeecCChhHHHHHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-----VE--EVASTGP--GIRFFQLYVYKDRNVVAQLV 142 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~-~-----~e--~i~~~~~--~~~~~Ql~~~~~~~~~~~~~ 142 (349)
|+++|||-+.+ +.+++..+.++|...++++|-.. + -+ ......+ .+..+||.. .+++...+.+
T Consensus 1 ~~~~aPm~~~~------~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g-~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGVT------DLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGG-SDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCCc------CHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcC-CCHHHHHHHH
Confidence 58999998765 78999999999988888877321 1 11 1111122 578899976 5788888999
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH------
Q 018919 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA------ 215 (349)
Q Consensus 143 ~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~------ 215 (349)
+++.++|+++|+||+.||..-.|. .++. ... ..++++ .+.++.+++..+.|+.+|.....
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~----~~~G------~~l---~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~ 140 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTK----GGAG------AAL---LKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEET 140 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhC----CCee------ehh---cCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHH
Confidence 999999999999999998531110 0110 000 124566 67899999988899999986322
Q ss_pred -HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEchHHHH
Q 018919 216 -EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 293 (349)
Q Consensus 216 -~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~-GA~~V~ig~~~l~ 293 (349)
+.++.+.++|+|+|.+++....+...++..++.+.++++.+ ++||+++|||++.+|+.++++. |||+|++||+++.
T Consensus 141 ~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 141 LELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 34677888999999995432222234456788888888765 7999999999999999999997 8999999999885
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=162.84 Aligned_cols=223 Identities=22% Similarity=0.280 Sum_probs=140.3
Q ss_pred cceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCC-------C--------------------
Q 018919 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST-------S-------------------- 112 (349)
Q Consensus 61 ~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~-------~-------------------- 112 (349)
++|+++|+++++||++|. +. .. +....+.+.+.|..+++. +.+. .
T Consensus 2 L~~~~~Gl~l~nPi~~as-G~----~~--~~~~~~~~~~~G~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n 74 (295)
T PF01180_consen 2 LSTNFCGLTLKNPIGLAS-GL----DK--NGEEIKRLFDAGFGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPN 74 (295)
T ss_dssp G-EEETTEEESSSEEE-T-TS----ST--SSHHHHHHHHHSSSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-B
T ss_pred ccEEECCEEcCCCcEECC-cC----CC--CchhhhhhhcCCccEEEeccccccccccccCCcEEeeccccccccccCCCh
Confidence 689999999999999986 32 12 223445666777666542 2110 0
Q ss_pred -CH----HHHHhh---CC----CceEEEEeecCC---hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC
Q 018919 113 -SV----EEVAST---GP----GIRFFQLYVYKD---RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (349)
Q Consensus 113 -~~----e~i~~~---~~----~~~~~Ql~~~~~---~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~ 177 (349)
.+ +++.+. .. .+.++.+.. .+ .+...+.+++++ .|+|++++|+.||... ..+.
T Consensus 75 ~g~~~~~~~~~~~~~~~~~~~~~pvi~Si~~-~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~-~~~~--------- 142 (295)
T PF01180_consen 75 PGLEYYLERLRPILKEAKKDVDIPVIASING-DSEEEIEDWAELAKRLE-AGADALELNLSCPNVP-GGRP--------- 142 (295)
T ss_dssp SHHHHHHHHHHHTHHHTTCH-CEEEEEEE-T-SSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTST-TSGG---------
T ss_pred HHHHHHHHHHHHHhhhcccccceeEEEEeec-CCchhHHHHHHHHHHhc-CcCCceEEEeeccCCC-Cccc---------
Confidence 01 112111 11 133344433 23 344455556555 8899999999998641 0000
Q ss_pred cCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC---H---HHHHHHHHcCCCEEEEecCCC----------CC-C
Q 018919 178 FLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT---A---EDARIAVQAGAAGIIVSNHGA----------RQ-L 239 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~---~---~~a~~a~~~G~d~I~v~~~gg----------~~-~ 239 (349)
. ..+++. .+.++++++..++||++|+..+ . +.+..+.+.|+|+|++.|.-. +. .
T Consensus 143 ---~-----~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~ 214 (295)
T PF01180_consen 143 ---F-----GQDPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVL 214 (295)
T ss_dssp ---G-----GGHHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESS
T ss_pred ---c-----ccCHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceee
Confidence 0 012333 4567888888899999999752 2 335556688999999877411 01 1
Q ss_pred ---C---Cc----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHH
Q 018919 240 ---D---YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEM 309 (349)
Q Consensus 240 ---~---~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~ 309 (349)
. +| +.++..+.++++.++.++|||+.|||.|++|++++|.+||++||++|++++. |+ .+++.
T Consensus 215 ~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~----Gp----~~~~~ 286 (295)
T PF01180_consen 215 GNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYR----GP----GVIRR 286 (295)
T ss_dssp SGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHH----GT----THHHH
T ss_pred ccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhc----Cc----HHHHH
Confidence 1 22 2357788888888866799999999999999999999999999999999873 56 36788
Q ss_pred HHHHHHHHH
Q 018919 310 LREEFELAM 318 (349)
Q Consensus 310 l~~el~~~m 318 (349)
+.+||+.+|
T Consensus 287 i~~~L~~~l 295 (295)
T PF01180_consen 287 INRELEEWL 295 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 888888877
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-18 Score=156.04 Aligned_cols=188 Identities=15% Similarity=0.103 Sum_probs=133.3
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCC----------------------CCHHHH----Hhh--CCCc
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST----------------------SSVEEV----AST--GPGI 124 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~----------------------~~~e~i----~~~--~~~~ 124 (349)
|+++|||+|.+ +.+++++..+.+...+++.++. .+++-+ ... .+.+
T Consensus 1 ~~~lApMag~t------d~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p 74 (233)
T cd02911 1 PVALASMAGIT------DGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVL 74 (233)
T ss_pred CceeeecCCCc------CHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCe
Confidence 89999999865 6689996555555556654331 112211 111 1246
Q ss_pred eEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc
Q 018919 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT 203 (349)
Q Consensus 125 ~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~ 203 (349)
..+|++. .+++...+.++.+++. .+.|+||++||+.... ..+.+..- +.+|+. .+.++.+++ .
T Consensus 75 ~~vqi~g-~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~----------~~g~G~~L---l~~p~~l~eiv~avr~-~ 138 (233)
T cd02911 75 VGVNVRS-SSLEPLLNAAALVAKN-AAILEINAHCRQPEMV----------EAGAGEAL---LKDPERLSEFIKALKE-T 138 (233)
T ss_pred EEEEecC-CCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHh----------cCCcchHH---cCCHHHHHHHHHHHHh-c
Confidence 7899987 6888888888888774 6999999999963100 00000000 346666 677999987 6
Q ss_pred CCcEEEEEec-----CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH
Q 018919 204 KLPILVKGVL-----TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 278 (349)
Q Consensus 204 ~~pv~vK~v~-----~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal 278 (349)
++||.+|... +.+.++.+.++|+|+|.+++. . .+....++.+.+++ . ++|||++|||.+++|+.+++
T Consensus 139 ~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~--~--~g~~ad~~~I~~i~--~--~ipVIgnGgI~s~eda~~~l 210 (233)
T cd02911 139 GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAM--D--PGNHADLKKIRDIS--T--ELFIIGNNSVTTIESAKEMF 210 (233)
T ss_pred CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcC--C--CCCCCcHHHHHHhc--C--CCEEEEECCcCCHHHHHHHH
Confidence 9999999973 346688899999999877532 1 12345677777775 3 79999999999999999999
Q ss_pred HhCCCEEEEchH
Q 018919 279 ALGASGIFIGRP 290 (349)
Q Consensus 279 ~~GA~~V~ig~~ 290 (349)
..|||+||+||+
T Consensus 211 ~~GaD~VmiGR~ 222 (233)
T cd02911 211 SYGADMVSVARA 222 (233)
T ss_pred HcCCCEEEEcCC
Confidence 999999999995
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=179.07 Aligned_cols=251 Identities=21% Similarity=0.148 Sum_probs=173.6
Q ss_pred cCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcC
Q 018919 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAG 149 (349)
Q Consensus 70 ~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G 149 (349)
+-.+|.++.|++++++ ++...++|+++...|+....++.. .+.++... .....++|+-. .....+.+.+. .
T Consensus 857 I~~rf~~~aMSfGalS-~eA~~aLA~a~~~~G~~sntGEGG-~~p~~~~~-~~~~~i~QiaS-GrFGv~~e~l~-----~ 927 (1485)
T PRK11750 857 LFKRFDSAAMSIGALS-PEAHEALAIAMNRLGGRSNSGEGG-EDPARYGT-EKVSKIKQVAS-GRFGVTPAYLV-----N 927 (1485)
T ss_pred HhcccccccCCCCccC-HHHHHHHHHHHHHhCCceecCCCC-CCHHHHhc-ccCCeEEEccC-CcCCCCHHHhc-----c
Confidence 3346899999999874 567889999999999998777665 35555422 22346788733 33333334432 3
Q ss_pred CCEEEEecCC---CCCC-----chh-HHhhhhcCCCCcCccc---ccCCCCCCch-HHHHHHHHHhc-CCcEEEEEecCH
Q 018919 150 FKAIALTVDT---PRLG-----RRE-ADIKNRFTLPPFLTLK---NFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLTA 215 (349)
Q Consensus 150 ~~~i~i~~d~---p~~g-----~r~-~d~~~~~~~p~~~~~~---~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~ 215 (349)
++.|+|.+.. |..| .+. ..+..-..+|++++.- ...+..+.+. .+.|.++|+.. +.||.||.+...
T Consensus 928 a~~ieIKi~QGAKPG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~ 1007 (1485)
T PRK11750 928 AEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEP 1007 (1485)
T ss_pred CCEEEEEecCCCCCCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 7888888864 2111 111 1111112234443321 1111223333 34577888876 679999998432
Q ss_pred ---HHHHHHHHcCCCEEEEecCC-CCC-------CCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHHHH
Q 018919 216 ---EDARIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALA 279 (349)
Q Consensus 216 ---~~a~~a~~~G~d~I~v~~~g-g~~-------~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~kal~ 279 (349)
..+..++++|+|.|+|+++. |+. .+.|.|....|.++.+.+ ++++.++++||++|+.|++||++
T Consensus 1008 ~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~a 1087 (1485)
T PRK11750 1008 GVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAI 1087 (1485)
T ss_pred CccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHH
Confidence 34446788999999999984 442 134566555677777765 45799999999999999999999
Q ss_pred hCCCEEEEchHHHHHHhhc----------------------------CHHHHHHHHHHHHHHHHHHHHHcCCCChhhh
Q 018919 280 LGASGIFIGRPVVYSLAAE----------------------------GEKGVRRVLEMLREEFELAMALSGCRSLKEI 329 (349)
Q Consensus 280 ~GA~~V~ig~~~l~~~~~~----------------------------G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l 329 (349)
||||.|.+||++|.+++|. ..+.|.+++..+.+|++.+|+.+|.++++|+
T Consensus 1088 LGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~la~lG~~s~~el 1165 (1485)
T PRK11750 1088 LGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMAQLGVRSLEDL 1165 (1485)
T ss_pred cCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 9999999999999988651 1357899999999999999999999999999
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=156.48 Aligned_cols=183 Identities=21% Similarity=0.256 Sum_probs=136.9
Q ss_pred eEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH-------HhhCCCceEEEEeecCChh
Q 018919 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRN 136 (349)
Q Consensus 64 ~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i-------~~~~~~~~~~Ql~~~~~~~ 136 (349)
+++|.+ .||+.|||++.+ +..|+.+++++|..++++... .+++++ ++...+++.+.+.... +.
T Consensus 6 ~~lgi~--~Pii~apM~~~s------~~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvn~~~~~-~~ 75 (307)
T TIGR03151 6 DLLGIE--YPIFQGGMAWVA------TGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPFGVNIMLLS-PF 75 (307)
T ss_pred HHhCCC--CCEEcCCCCCCC------CHHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCcEEeeecCC-CC
Confidence 445554 699999998743 448999999999999997543 344433 2222356666664422 22
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHH
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAE 216 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~ 216 (349)
..+.++.+.+.|++.+.++...| .+.++++++. +++++. .+.+.+
T Consensus 76 -~~~~~~~~~~~~v~~v~~~~g~p--------------------------------~~~i~~lk~~-g~~v~~-~v~s~~ 120 (307)
T TIGR03151 76 -VDELVDLVIEEKVPVVTTGAGNP--------------------------------GKYIPRLKEN-GVKVIP-VVASVA 120 (307)
T ss_pred -HHHHHHHHHhCCCCEEEEcCCCc--------------------------------HHHHHHHHHc-CCEEEE-EcCCHH
Confidence 34567777888999887643221 2467888775 788776 578999
Q ss_pred HHHHHHHcCCCEEEEecC--CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 217 DARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
+++.+.++|+|.|++.++ ||+. +..+++..++++++.+ ++|||++|||.+++|+.+++++||++|++|+.|+..
T Consensus 121 ~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t 196 (307)
T TIGR03151 121 LAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCA 196 (307)
T ss_pred HHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcc
Confidence 999999999999999875 4432 2345789999999887 799999999999999999999999999999999865
Q ss_pred H
Q 018919 295 L 295 (349)
Q Consensus 295 ~ 295 (349)
.
T Consensus 197 ~ 197 (307)
T TIGR03151 197 K 197 (307)
T ss_pred c
Confidence 4
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.6e-17 Score=154.16 Aligned_cols=187 Identities=26% Similarity=0.363 Sum_probs=119.7
Q ss_pred eeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH-------HhhCCCceEEEEeecCCh
Q 018919 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDR 135 (349)
Q Consensus 63 ~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i-------~~~~~~~~~~Ql~~~~~~ 135 (349)
|+++|.+ .||+.+||++.+ +| .|+.+++++|..++++... .+.+++ ++...+++.++++.....
T Consensus 5 t~~lgi~--~PIiqapM~~is--~~----~LaaAVs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~ 75 (330)
T PF03060_consen 5 TELLGIK--YPIIQAPMGGIS--TP----ELAAAVSNAGGLGFLGAGG-LTPEQLREEIRKIRALTDKPFGVNLFLPPPD 75 (330)
T ss_dssp HHHHT-S--SSEEE---TTTS--SH----HHHHHHHHTTSBEEEECTT-SSHHHHHHHHHHHHHH-SS-EEEEEETTSTT
T ss_pred HHHhCCC--cCEEcCCCCCCC--hH----HHHHHHHhCCCEeeccccc-cChHHHHHHHHHHHhhccccccccccccCcc
Confidence 3455655 699999998743 44 8999999999999998543 344433 333345777887664332
Q ss_pred hHHH----------HHHHHHHHcCC--------------CEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc
Q 018919 136 NVVA----------QLVRRAERAGF--------------KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (349)
Q Consensus 136 ~~~~----------~~~~~~~~~G~--------------~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (349)
.... ...+...+.+. +.+..+.+.|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~------------------------------ 125 (330)
T PF03060_consen 76 PADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPP------------------------------ 125 (330)
T ss_dssp HHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-------------------------------
T ss_pred cchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccch------------------------------
Confidence 2111 11222233343 36665554331
Q ss_pred hHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecC--CCCCC-CCchhhHHHHHHHHHHhcCCCcEEEecCC
Q 018919 192 MDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQL-DYVPATIMALEEVVKATQGRIPVFLDGGV 268 (349)
Q Consensus 192 ~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~--gg~~~-~~~~~~~~~l~~i~~~~~~~ipvia~GGI 268 (349)
.+.++++++ .++.++. .+.+.++|+.+.++|+|+|++.+. ||+.. +.+ +++..++++++.+ ++|||+.|||
T Consensus 126 -~~~i~~l~~-~gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~--~iPViaAGGI 199 (330)
T PF03060_consen 126 -PEVIERLHA-AGIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAV--DIPVIAAGGI 199 (330)
T ss_dssp -HHHHHHHHH-TT-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH---SS-EEEESS-
T ss_pred -HHHHHHHHH-cCCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhc--CCcEEEecCc
Confidence 245777765 4888776 578999999999999999999874 66543 122 5788899999888 6999999999
Q ss_pred CCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 269 RRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
.++.++..+|++||++|++||.|+..
T Consensus 200 ~dg~~iaaal~lGA~gV~~GTrFl~t 225 (330)
T PF03060_consen 200 ADGRGIAAALALGADGVQMGTRFLAT 225 (330)
T ss_dssp -SHHHHHHHHHCT-SEEEESHHHHTS
T ss_pred CCHHHHHHHHHcCCCEeecCCeEEec
Confidence 99999999999999999999999854
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=145.27 Aligned_cols=260 Identities=22% Similarity=0.306 Sum_probs=164.7
Q ss_pred hHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCCCC
Q 018919 33 QWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWST 111 (349)
Q Consensus 33 ~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~~~ 111 (349)
|.++|.-. .+-.|.+.||.-.. ++..+.++++|+++++||++|+ ++. . +..-.......|..++ +++..+
T Consensus 58 E~sHrlAv-~aas~gl~Pr~~~~-d~~~L~~k~~g~~f~NPiglAA-Gfd----k--~~eaidgL~~~gfG~ieigSvTp 128 (398)
T KOG1436|consen 58 EFSHRLAV-LAASWGLLPRDRVA-DDASLETKVLGRKFSNPIGLAA-GFD----K--NAEAIDGLANSGFGFIEIGSVTP 128 (398)
T ss_pred HHHHHHHH-HHHHhCCCchhccC-CccchhhHHhhhhccCchhhhh-ccC----c--chHHHHHHHhCCCceEEeccccc
Confidence 33444433 24567788875332 4567789999999999999998 443 2 2234455556777766 444433
Q ss_pred CCHHHHHhhCCCce-------------------------------------------EEEEeecC-ChhHHHHHHHHHHH
Q 018919 112 SSVEEVASTGPGIR-------------------------------------------FFQLYVYK-DRNVVAQLVRRAER 147 (349)
Q Consensus 112 ~~~e~i~~~~~~~~-------------------------------------------~~Ql~~~~-~~~~~~~~~~~~~~ 147 (349)
.+ ++-+|.|+ .+.+-.++ +.+...+.++-+..
T Consensus 129 ~p----qeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~ 204 (398)
T KOG1436|consen 129 KP----QEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRV 204 (398)
T ss_pred CC----CCCCCCCceEecccccchhhccCCCcccHHHHHHHHHHHHHhcCCCccccceeeeccccCCcchHHHHHHHhhh
Confidence 21 11122222 23332222 23344455555554
Q ss_pred cC--CCEEEEecCCCCC-CchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH---HHh--c--CCcEEEEEecCH--
Q 018919 148 AG--FKAIALTVDTPRL-GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL---QTI--T--KLPILVKGVLTA-- 215 (349)
Q Consensus 148 ~G--~~~i~i~~d~p~~-g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i---~~~--~--~~pv~vK~v~~~-- 215 (349)
.| +|.++||++||.. |.| .. +.+.++.+.+.++ +.. + +.|+.+|...+.
T Consensus 205 ~g~~adylviNvSsPNtpGlr-----------------~l--q~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~ 265 (398)
T KOG1436|consen 205 FGPFADYLVINVSSPNTPGLR-----------------SL--QKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSE 265 (398)
T ss_pred cccccceEEEeccCCCCcchh-----------------hh--hhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhH
Confidence 43 5556666666642 111 11 0111111222222 222 1 358999987543
Q ss_pred ----HHHHHHHHcCCCEEEEecCCC-C----------CCC---Cch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 018919 216 ----EDARIAVQAGAAGIIVSNHGA-R----------QLD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 216 ----~~a~~a~~~G~d~I~v~~~gg-~----------~~~---~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 273 (349)
+.+....+.+.|+++++|..- | .-. +|+ .+.+.++++...++++||||.+|||.||.|
T Consensus 266 ~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~D 345 (398)
T KOG1436|consen 266 KELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKD 345 (398)
T ss_pred HHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHh
Confidence 345556689999999997521 1 001 232 356788888888888999999999999999
Q ss_pred HHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 274 VFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 274 v~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
+.+-+.+||+.||+++++.| .|+ .+++.++.||...|...|+.++.|+.+.
T Consensus 346 A~EkiraGASlvQlyTal~y----eGp----~i~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 346 AYEKIRAGASLVQLYTALVY----EGP----AIIEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred HHHHHhcCchHHHHHHHHhh----cCc----hhHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 99999999999999999987 366 3788999999999999999999998765
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=149.12 Aligned_cols=194 Identities=23% Similarity=0.287 Sum_probs=148.4
Q ss_pred eecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC-CH---HHHH----hhCC--CceEEEEeecCChhHHHHHHHH
Q 018919 75 MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-SV---EEVA----STGP--GIRFFQLYVYKDRNVVAQLVRR 144 (349)
Q Consensus 75 ~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~-~~---e~i~----~~~~--~~~~~Ql~~~~~~~~~~~~~~~ 144 (349)
++|||-..+ +.++++.++..|...+++.|-.. ++ |.-+ ...+ .|.++|+-. +|++.+.+.++.
T Consensus 22 i~APMvd~S------~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~-ndp~~ll~Aa~l 94 (358)
T KOG2335|consen 22 IVAPMVDYS------ELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGG-NDPENLLKAARL 94 (358)
T ss_pred ccCCccccc------HHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcC-CCHHHHHHHHHH
Confidence 699996543 88999999999999888876311 00 1111 1123 689999755 799999998888
Q ss_pred HHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec------CHHH
Q 018919 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL------TAED 217 (349)
Q Consensus 145 ~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~------~~~~ 217 (349)
+...+ |+|.||++||.. . -.+.+|. ... +.++++ -+.++.+++.++.||.+|+.. |.+.
T Consensus 95 v~~y~-D~idlNcGCPq~--~--a~~g~yG------a~L---~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ 160 (358)
T KOG2335|consen 95 VQPYC-DGIDLNCGCPQK--V--AKRGGYG------AFL---MDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDY 160 (358)
T ss_pred hhhhc-CcccccCCCCHH--H--HhcCCcc------cee---ccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHH
Confidence 88776 999999999842 0 0111221 100 346677 678999999999999999973 5577
Q ss_pred HHHHHHcCCCEEEEecCCCCC----CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQ----LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~----~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~~V~ig~~~l 292 (349)
++.+.++|++.++| ||.+. ...++..++.+..+++.+++ +||+++|+|.+.+|+-.++. .||++||+|+..|
T Consensus 161 ak~~e~aG~~~ltV--HGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL 237 (358)
T KOG2335|consen 161 AKMLEDAGVSLLTV--HGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANGNILSLEDVERCLKYTGADGVMSARGLL 237 (358)
T ss_pred HHHHHhCCCcEEEE--ecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeCCcCcHHHHHHHHHHhCCceEEecchhh
Confidence 99999999999999 66642 22578889999999999854 99999999999999999999 8999999999544
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.2e-16 Score=139.54 Aligned_cols=151 Identities=14% Similarity=0.056 Sum_probs=115.0
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQT 201 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~ 201 (349)
.+.++|+.. .+++...+.++.+.+ ++++|+||+.||++-.. ..+.+... +.||+. .+.++.+++
T Consensus 68 ~~vivnv~~-~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~----------~~g~G~~L---l~dp~~l~~iv~av~~ 132 (231)
T TIGR00736 68 ALVSVNVRF-VDLEEAYDVLLTIAE-HADIIEINAHCRQPEIT----------EIGIGQEL---LKNKELLKEFLTKMKE 132 (231)
T ss_pred CCEEEEEec-CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHc----------CCCCchhh---cCCHHHHHHHHHHHHc
Confidence 578899865 688888888877755 89999999999963000 00001111 356776 677888884
Q ss_pred hcCCcEEEEEecC------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 018919 202 ITKLPILVKGVLT------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 202 ~~~~pv~vK~v~~------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 275 (349)
.++||.+|+... .+.++.+.++|+|+|+|. .++. ..+...++.+.++++.++ ++|||++|||++++|+.
T Consensus 133 -~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd--~~~~-g~~~a~~~~I~~i~~~~~-~ipIIgNGgI~s~eda~ 207 (231)
T TIGR00736 133 -LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD--AMYP-GKPYADMDLLKILSEEFN-DKIIIGNNSIDDIESAK 207 (231)
T ss_pred -CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEe--eCCC-CCchhhHHHHHHHHHhcC-CCcEEEECCcCCHHHHH
Confidence 589999999852 366899999999999994 3221 112267999999999873 49999999999999999
Q ss_pred HHHHhCCCEEEEchHHHH
Q 018919 276 KALALGASGIFIGRPVVY 293 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l~ 293 (349)
+++..|||+||+||+.+.
T Consensus 208 e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 208 EMLKAGADFVSVARAILK 225 (231)
T ss_pred HHHHhCCCeEEEcHhhcc
Confidence 999999999999998875
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-14 Score=129.58 Aligned_cols=187 Identities=25% Similarity=0.320 Sum_probs=130.7
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHH-------HHhhCCCceEEEEeecCChhHHHHHHH
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-------VASTGPGIRFFQLYVYKDRNVVAQLVR 143 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~-------i~~~~~~~~~~Ql~~~~~~~~~~~~~~ 143 (349)
..|+++|||.+.+ +..+++++.+.|....++... .+.++ +++....+..++++.........+.++
T Consensus 2 ~~pi~~a~m~g~~------~~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGVS------TPELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCCC------CHHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 4799999998754 458999999999766664322 12222 222221245577766321134567888
Q ss_pred HHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHH
Q 018919 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQ 223 (349)
Q Consensus 144 ~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~ 223 (349)
.+.++|++++.++-..+ .+.++++++ .+++++.+ +.+.++++.+.+
T Consensus 75 ~~~~~g~d~v~l~~~~~--------------------------------~~~~~~~~~-~~i~~i~~-v~~~~~~~~~~~ 120 (236)
T cd04730 75 VALEEGVPVVSFSFGPP--------------------------------AEVVERLKA-AGIKVIPT-VTSVEEARKAEA 120 (236)
T ss_pred HHHhCCCCEEEEcCCCC--------------------------------HHHHHHHHH-cCCEEEEe-CCCHHHHHHHHH
Confidence 88999999988643210 234555554 47888765 567788999999
Q ss_pred cCCCEEEEecC--CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCH
Q 018919 224 AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 300 (349)
Q Consensus 224 ~G~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~ 300 (349)
.|+|+|.+.+. +|.........++.+.++++.+ ++||++.|||++++|+.+++++|||+|++||+++....+.+.
T Consensus 121 ~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~~~ 197 (236)
T cd04730 121 AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGAS 197 (236)
T ss_pred cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccCCC
Confidence 99999998653 2221111134577888888776 799999999999999999999999999999999986554444
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-14 Score=135.11 Aligned_cols=182 Identities=17% Similarity=0.214 Sum_probs=130.9
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH-------Hhh-CCCceEEEEeecCChhHHHHHH
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------AST-GPGIRFFQLYVYKDRNVVAQLV 142 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i-------~~~-~~~~~~~Ql~~~~~~~~~~~~~ 142 (349)
..||+.+||++.+ + ...|+.+.+++|...+++... .+.+++ ++. ..+|+.+++-...+.....+.+
T Consensus 2 ~yPIiqgpM~~vs--~---~~~LaaAVS~AGgLG~la~~~-~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRVS--D---VAEFAVAVAEGGGLPFIALAL-MRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCCC--C---cHHHHHHHHhCCccccCCCCC-CCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 4799999998754 2 147999999999998887543 344443 221 2367777774322223345678
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHH
Q 018919 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAV 222 (349)
Q Consensus 143 ~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~ 222 (349)
+.+.+.+.+.+.++.+.| + .++++++ .+++++. .+.+++.|+++.
T Consensus 76 ~vi~e~~v~~V~~~~G~P--------------------------------~-~~~~lk~-~Gi~v~~-~v~s~~~A~~a~ 120 (320)
T cd04743 76 AVVRAIKPTFALIAGGRP--------------------------------D-QARALEA-IGISTYL-HVPSPGLLKQFL 120 (320)
T ss_pred HHHHhcCCcEEEEcCCCh--------------------------------H-HHHHHHH-CCCEEEE-EeCCHHHHHHHH
Confidence 888888998877654322 1 2566665 4888875 468999999999
Q ss_pred HcCCCEEEEecC--CCCCCCCchhhHHHHHHHHHHhc--------CCCcEEEecCCCCHHHHHHHHHhCC--------CE
Q 018919 223 QAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGA--------SG 284 (349)
Q Consensus 223 ~~G~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~--------~~ipvia~GGI~~~~dv~kal~~GA--------~~ 284 (349)
++|+|+|++.++ ||+. +..+++..++++.+.+. .++|||+.|||.++..+..++++|| ++
T Consensus 121 ~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~G 198 (320)
T cd04743 121 ENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVG 198 (320)
T ss_pred HcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccE
Confidence 999999999875 5653 23345556666655541 2699999999999999999999998 89
Q ss_pred EEEchHHHHHH
Q 018919 285 IFIGRPVVYSL 295 (349)
Q Consensus 285 V~ig~~~l~~~ 295 (349)
|++||.|+..-
T Consensus 199 V~mGTrFl~t~ 209 (320)
T cd04743 199 VLMGTAYLFTE 209 (320)
T ss_pred EEEccHHhcch
Confidence 99999998743
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=138.06 Aligned_cols=190 Identities=26% Similarity=0.310 Sum_probs=127.7
Q ss_pred CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC--CHH-HHH---hhCCCceEEEEee---------
Q 018919 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--SVE-EVA---STGPGIRFFQLYV--------- 131 (349)
Q Consensus 67 g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~--~~e-~i~---~~~~~~~~~Ql~~--------- 131 (349)
...+..||+.+||++.+ ...+|.+..+.|..++++..... .++ ++. +..+++...+.|.
T Consensus 10 ~~~i~~PIiq~gM~~vs------~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~ 83 (336)
T COG2070 10 LLGIKYPIIQGGMAGVS------TPELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNVN 83 (336)
T ss_pred ccCccCCeecCCccccC------cHHHHHHHhccCCccccccccCCHHHHHHHHHHHHHhcCCcchhcccccccccchhh
Confidence 34566899999998743 44899999999999887655432 121 222 2222332111111
Q ss_pred -cCC-hhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEE
Q 018919 132 -YKD-RNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPIL 208 (349)
Q Consensus 132 -~~~-~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~ 208 (349)
... .....+.++.+.+. |...+..+...| + .+.++.++. .+..++
T Consensus 84 ~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~-----------------------------~--~~~i~~~~~-~g~~v~ 131 (336)
T COG2070 84 ILVARRNAAEAGVDAIIEGAGVPVVSTSFGAP-----------------------------P--AEFVARLKA-AGIKVI 131 (336)
T ss_pred eecccccchHHhhhhHHhcCCCCEEeccCCCC-----------------------------c--HHHHHHHHH-cCCeEE
Confidence 000 11122333333332 555444333211 1 356777776 677777
Q ss_pred EEEecCHHHHHHHHHcCCCEEEEecC--CCCCC--CCchhhHHHHHHHHHHhcCC-CcEEEecCCCCHHHHHHHHHhCCC
Q 018919 209 VKGVLTAEDARIAVQAGAAGIIVSNH--GARQL--DYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGAS 283 (349)
Q Consensus 209 vK~v~~~~~a~~a~~~G~d~I~v~~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-ipvia~GGI~~~~dv~kal~~GA~ 283 (349)
.+ +.+...|+++.++|+|+|++.+. ||+.- +..++++.+++++++++ + +|||+.|||.++.++..||++||+
T Consensus 132 ~~-v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGGI~dg~~i~AAlalGA~ 208 (336)
T COG2070 132 HS-VITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGGIADGRGIAAALALGAD 208 (336)
T ss_pred EE-eCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecCccChHHHHHHHHhccH
Confidence 64 67899999999999999999764 55432 23567789999999998 5 999999999999999999999999
Q ss_pred EEEEchHHHHHHhh
Q 018919 284 GIFIGRPVVYSLAA 297 (349)
Q Consensus 284 ~V~ig~~~l~~~~~ 297 (349)
+|++||.|+....+
T Consensus 209 gVq~GT~Fl~t~Ea 222 (336)
T COG2070 209 GVQMGTRFLATKEA 222 (336)
T ss_pred HHHhhhhhhccccc
Confidence 99999999865433
|
|
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-13 Score=130.53 Aligned_cols=213 Identities=18% Similarity=0.160 Sum_probs=131.0
Q ss_pred eEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH-------Hhh-C-CCceEEEEeec-C
Q 018919 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------AST-G-PGIRFFQLYVY-K 133 (349)
Q Consensus 64 ~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i-------~~~-~-~~~~~~Ql~~~-~ 133 (349)
+++|+ ..|++.+||+++ .++ ..|+.+++++|..++++..+ .+++++ ++. . .+++.++|+.. .
T Consensus 8 ~~lgi--ryPii~gpMa~G-iss----~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~ 79 (418)
T cd04742 8 EDYGL--RYAYVAGAMARG-IAS----AELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPD 79 (418)
T ss_pred HHhCC--CccEECCcccCC-CCC----HHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCC
Confidence 44555 469999999832 233 48999999999999998654 345544 222 2 35788888753 3
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEe--cCCCCCCchhHH--hh-h--h-cCCCC----cCcccccC-CCCCCchHHHHHHHH
Q 018919 134 DRNVVAQLVRRAERAGFKAIALT--VDTPRLGRREAD--IK-N--R-FTLPP----FLTLKNFQ-GLDLGKMDEDVKWLQ 200 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~--~d~p~~g~r~~d--~~-~--~-~~~p~----~~~~~~~~-~~~~~~~~~~i~~i~ 200 (349)
+++...+.++.+.+.|++.++.. ++.+..-.+.+. ++ + + +..+. +++.+... -+..+..-+.+++++
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~ 159 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLL 159 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHH
Confidence 44444567888888999887643 221110011111 00 0 0 00000 00000000 011222245678877
Q ss_pred HhcCCcEEEEEecCHHHHHHHHHcC-CCEEEEec-CCCCCCCCchhhHHHHHHHHH---Hh------cCCCcEEEecCCC
Q 018919 201 TITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVK---AT------QGRIPVFLDGGVR 269 (349)
Q Consensus 201 ~~~~~pv~vK~v~~~~~a~~a~~~G-~d~I~v~~-~gg~~~~~~~~~~~~l~~i~~---~~------~~~ipvia~GGI~ 269 (349)
+. ++.|.++|+.+.+.| +|.|++.. .||+. +..+++..++.+.+ .+ ..++||++.|||.
T Consensus 160 ~~--------G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~--g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~ 229 (418)
T cd04742 160 AE--------GKITEEQAELARRVPVADDITVEADSGGHT--DNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG 229 (418)
T ss_pred Hc--------CCCCHHHHHHHHhCCCCCEEEEcccCCCCC--CCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCC
Confidence 64 234999999999999 59999974 25543 22234455555543 33 1259999999999
Q ss_pred CHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 270 RGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 270 ~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
++.++..++++||++|++||.|+..
T Consensus 230 tg~~vaAA~alGAd~V~~GT~flat 254 (418)
T cd04742 230 TPEAAAAAFALGADFIVTGSINQCT 254 (418)
T ss_pred CHHHHHHHHHcCCcEEeeccHHHhC
Confidence 9999999999999999999999854
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=134.20 Aligned_cols=256 Identities=17% Similarity=0.153 Sum_probs=180.7
Q ss_pred ccccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhh---------
Q 018919 50 PRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST--------- 120 (349)
Q Consensus 50 p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~--------- 120 (349)
|..|.-++++|.+++..|.+..+|+.++.- .|.....+.+.|-..|.++++.-.....-..+...
T Consensus 92 ~k~~~~l~~ie~~vd~~G~k~~npf~~~s~------Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~t 165 (471)
T KOG1799|consen 92 LKALLYLKSIEELVDWDGQKPANPFHQKSK------PPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSPT 165 (471)
T ss_pred hhhhcchhhhhhhccccCccCCCccccCCC------CCCccHHHHHhhhhcccchhheeeeecchhhheecccceeeccC
Confidence 556667889999999999999999998763 34456678888888888877642211000001000
Q ss_pred -----CC-CceEEEE--ee-----------------------------cCChhHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 121 -----GP-GIRFFQL--YV-----------------------------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 121 -----~~-~~~~~Ql--~~-----------------------------~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
.| ++.|..+ .. -.+...+.++.++.+++|++.+++|+.||+.
T Consensus 166 ~~~~~~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphg- 244 (471)
T KOG1799|consen 166 KRSCFIPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHG- 244 (471)
T ss_pred CCCccccCCCccchhhhhccchHHHHHHHHHHhcccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCC-
Confidence 01 1111100 00 0122335678888899999999999999963
Q ss_pred chhHHhhhhcCCCC-cCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH----HHHHHHHHcCCCEEEEecC---
Q 018919 164 RREADIKNRFTLPP-FLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH--- 234 (349)
Q Consensus 164 ~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~----~~a~~a~~~G~d~I~v~~~--- 234 (349)
+++ ++++... ++|.. .+...|++....+|++-|..++. |.|+.+.+.|+.+|...|+
T Consensus 245 -----------m~ergmgla~g---q~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~NTi~S 310 (471)
T KOG1799|consen 245 -----------MCERGMGLALG---QCPIVDCEVCGWINAKATIPMVSKMTPNITDKREVARSVNPVGCEGIAAINTIMS 310 (471)
T ss_pred -----------Cccccccceec---cChhhhHHHhhhhhhccccccccccCCCcccccccchhcCcccccchhhHhHHHH
Confidence 232 3444432 46666 67799999999999999998765 4577788899999987653
Q ss_pred --C-------------CCCCCC-------chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 235 --G-------------ARQLDY-------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 235 --g-------------g~~~~~-------~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
| |+.-.+ .|..+..+..|++.++ ..|+.+.|||.++.|.+.++.+|++.|++++..+
T Consensus 311 vM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~ 389 (471)
T KOG1799|consen 311 VMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVM 389 (471)
T ss_pred HhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCcccccchhhHhhcCCcHhhhhhHHH
Confidence 0 011112 2445667777777774 7999999999999999999999999999999886
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 293 YSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
. .|.. .++.+..||+..|.+.|+++|++++++.|.
T Consensus 390 ~----~~~~----~V~~~Ca~LK~~m~~~~~~ti~~~~G~SL~ 424 (471)
T KOG1799|consen 390 M----HGYG----HVKTLCAELKDFMKQHNFSTIEEFRGHSLQ 424 (471)
T ss_pred h----cCcc----hHHHHHHHHHHHHHHcCchhhhhccCcchh
Confidence 4 3443 357889999999999999999999988653
|
|
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.6e-13 Score=130.01 Aligned_cols=211 Identities=20% Similarity=0.180 Sum_probs=129.7
Q ss_pred eEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH-------hhCC-Cc-eEEEEeecC-
Q 018919 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGP-GI-RFFQLYVYK- 133 (349)
Q Consensus 64 ~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~-------~~~~-~~-~~~Ql~~~~- 133 (349)
+++|++ .|++.+||+++ .++ ..|+.+++++|..++++..+ .+++++. +..+ ++ +.++|+.+.
T Consensus 13 ~~lgir--yPiiqgpMa~G-iSs----~eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~ 84 (444)
T TIGR02814 13 EDYGVR--YAYVAGAMANG-IAS----AELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSPS 84 (444)
T ss_pred HHhCCC--CcEECccccCC-CCC----HHHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccCC
Confidence 445554 69999999832 233 48999999999999998654 3555543 2223 35 888887643
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEe--cC-CCCCCchhHHhhhhcC-CCCc-Ccc-----cccC------CCCCCchHHHHH
Q 018919 134 DRNVVAQLVRRAERAGFKAIALT--VD-TPRLGRREADIKNRFT-LPPF-LTL-----KNFQ------GLDLGKMDEDVK 197 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~--~d-~p~~g~r~~d~~~~~~-~p~~-~~~-----~~~~------~~~~~~~~~~i~ 197 (349)
+++.-.+.++.+.+.|++.++.. ++ +|.. .+.+. .++. .+.+ +.. .... -...|..-+.++
T Consensus 85 ~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~--~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~ 161 (444)
T TIGR02814 85 DPALEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRA--KGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQ 161 (444)
T ss_pred CcccHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhh--ccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHH
Confidence 33333456777778899887653 12 1211 11110 0110 0000 000 0000 011111134566
Q ss_pred HHHHhcCCcEEEEEecCHHHHHHHHHcC-CCEEEEec-CCCCCCCCchhhHHHHHHHH---HHh------cCCCcEEEec
Q 018919 198 WLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVV---KAT------QGRIPVFLDG 266 (349)
Q Consensus 198 ~i~~~~~~pv~vK~v~~~~~a~~a~~~G-~d~I~v~~-~gg~~~~~~~~~~~~l~~i~---~~~------~~~ipvia~G 266 (349)
.+++. ++.|+++|+.+.+.| +|.|++.. .||+. +..+++..++.+. +.+ ..++||++.|
T Consensus 162 ~L~~~--------G~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAG 231 (444)
T TIGR02814 162 KLLAE--------GRITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAG 231 (444)
T ss_pred HHHHc--------CCCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeC
Confidence 66653 334999999999999 59998863 25543 2234556666664 333 1268999999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEchHHHHHH
Q 018919 267 GVRRGTDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 267 GI~~~~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
||.+++++..++++||++|++||.|+...
T Consensus 232 GI~t~~~vaAAlaLGAdgV~~GT~flat~ 260 (444)
T TIGR02814 232 GIGTPEAAAAAFMLGADFIVTGSVNQCTV 260 (444)
T ss_pred CCCCHHHHHHHHHcCCcEEEeccHHHhCc
Confidence 99999999999999999999999998643
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-12 Score=111.56 Aligned_cols=167 Identities=22% Similarity=0.261 Sum_probs=111.4
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC--CceEEEEee----cCChh--HHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQLYV----YKDRN--VVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~--~~~~~Ql~~----~~~~~--~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
..||++|...|..++ ... ++++|++... +..++-|+. ..+.- -+.+.++.+.++|++.+.+ |+.
T Consensus 2 ~~mA~Aa~~gGA~gi-R~~---~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAl--DaT-- 73 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGI-RAN---GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIAL--DAT-- 73 (192)
T ss_dssp HHHHHHHHHCT-SEE-EEE---SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEE--E-S--
T ss_pred HHHHHHHHHCCceEE-EcC---CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEE--ecC--
Confidence 368999999998865 323 3566554332 333444543 11111 1467888899999999875 543
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC-
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD- 240 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~- 240 (349)
.|.| |.. .+.++++|+++ -+++-.+.+.|+++.|.++|+|.|-....|.+...
T Consensus 74 -~R~R----------------------p~~l~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~ 128 (192)
T PF04131_consen 74 -DRPR----------------------PETLEELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTK 128 (192)
T ss_dssp -SSS-----------------------SS-HHHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTST
T ss_pred -CCCC----------------------CcCHHHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCC
Confidence 2222 222 57799999987 55556899999999999999999988777765321
Q ss_pred CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 241 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 241 ~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
...|.++.+.++++. .+|||+.|+|++++++.++|.+||++|.||+++-.
T Consensus 129 ~~~pD~~lv~~l~~~---~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 129 GDGPDFELVRELVQA---DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp TSSHHHHHHHHHHHT---TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-
T ss_pred CCCCCHHHHHHHHhC---CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC
Confidence 256789999998864 79999999999999999999999999999999864
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=118.85 Aligned_cols=222 Identities=18% Similarity=0.153 Sum_probs=138.0
Q ss_pred ceeEcCeecCcceeecccccccc----cCC-hhhHHHHHHHHHcCCeEEecCCCCC--------------C---HH---H
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKM----AHP-EGEYATARAASAAGTIMTLSSWSTS--------------S---VE---E 116 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l----~~~-~~~~~la~aa~~~G~~~~~~~~~~~--------------~---~e---~ 116 (349)
..+|.+.++++-|+.|||....- ..+ +....+-+.-++.|+.+++++.... + ++ +
T Consensus 6 P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~ 85 (337)
T PRK13523 6 PYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHK 85 (337)
T ss_pred CeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHH
Confidence 46788899999999999953211 112 2334566666777888877543110 1 11 1
Q ss_pred HHhh---CCCceEEEEeecCC---------------------------hh-------HHHHHHHHHHHcCCCEEEEecCC
Q 018919 117 VAST---GPGIRFFQLYVYKD---------------------------RN-------VVAQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 117 i~~~---~~~~~~~Ql~~~~~---------------------------~~-------~~~~~~~~~~~~G~~~i~i~~d~ 159 (349)
+.+. .....++||+-... .+ ...+.+++++++|+|+|+||..+
T Consensus 86 l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ah 165 (337)
T PRK13523 86 LVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAH 165 (337)
T ss_pred HHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 2111 12456788733100 01 12345567778999999999863
Q ss_pred CCCCchhHHhhhhcCCCCc--CcccccCCCCC-Cch-HHHHHHHHHhcCCcEEEEEec--------CHHH----HHHHHH
Q 018919 160 PRLGRREADIKNRFTLPPF--LTLKNFQGLDL-GKM-DEDVKWLQTITKLPILVKGVL--------TAED----ARIAVQ 223 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~--~~~~~~~~~~~-~~~-~~~i~~i~~~~~~pv~vK~v~--------~~~~----a~~a~~ 223 (349)
|. +-+.|..|.. -+..-+.++.+ ..| .+.++.+|+.++.||.+|+.. +.++ ++.+.+
T Consensus 166 ---Gy----Ll~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~ 238 (337)
T PRK13523 166 ---GY----LINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKE 238 (337)
T ss_pred ---ch----HHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHH
Confidence 11 1222322210 00000111111 235 678999999988999999863 4433 577888
Q ss_pred cCCCEEEEecCCCC----CCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 224 AGAAGIIVSNHGAR----QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 224 ~G~d~I~v~~~gg~----~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
+|+|.|.|+..... +...+. .++...++++.+ ++||++.|+|++++++.++|+.| ||+|++||+++.
T Consensus 239 ~gvD~i~vs~g~~~~~~~~~~~~~-~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia 310 (337)
T PRK13523 239 QGVDLIDVSSGAVVPARIDVYPGY-QVPFAEHIREHA--NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLR 310 (337)
T ss_pred cCCCEEEeCCCCCCCCCCCCCccc-cHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh
Confidence 99999999643211 111111 456667777776 79999999999999999999976 999999999984
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-11 Score=106.09 Aligned_cols=184 Identities=24% Similarity=0.247 Sum_probs=120.4
Q ss_pred eeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCCC-------CC---HHHHHhhCCCceEEEEeecCChhHHHHHH
Q 018919 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST-------SS---VEEVASTGPGIRFFQLYVYKDRNVVAQLV 142 (349)
Q Consensus 74 i~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~~-------~~---~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~ 142 (349)
|++++|.+... +....+++.+.+.|+.++. .+... .. ++.+......+.++|++.....+.....+
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 45677765421 2346788999998876543 22111 11 23333333367789998744333333335
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHH
Q 018919 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARI 220 (349)
Q Consensus 143 ~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~ 220 (349)
+.+.++|++++.++..++.. +++ .+.++++++.+ +.|+++|.....+....
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~---------------------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~ 130 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL---------------------------AREDLELIRELREAVPDVKVVVKLSPTGELAAA 130 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH---------------------------HHHHHHHHHHHHHhcCCceEEEEECCCCccchh
Confidence 78899999999998876421 222 56789999887 89999997644332222
Q ss_pred -HHHcCCCEEEEecCCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 221 -AVQAGAAGIIVSNHGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 221 -a~~~G~d~I~v~~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+.+.|+|.|.++++...+...... ....+..+... .++||+++|||.+++++.+++++|||+|++||
T Consensus 131 ~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 131 AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG--SKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc--CCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 688999999998764432222111 12333333333 27999999999999999999999999999996
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-11 Score=109.11 Aligned_cols=179 Identities=22% Similarity=0.179 Sum_probs=116.6
Q ss_pred CChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeec-CC--h--hHHHHHHHHHHHcCCCEEEEecCCC
Q 018919 86 HPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVY-KD--R--NVVAQLVRRAERAGFKAIALTVDTP 160 (349)
Q Consensus 86 ~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~-~~--~--~~~~~~~~~~~~~G~~~i~i~~d~p 160 (349)
.++--..+++++.++|+..+.. .+...++++++....|+...+|.. .+ . ....+.++.+.++|++.+.+. .+
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~-~~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d--~~ 97 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRA-NGVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALD--AT 97 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEc-CCHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEe--CC
Confidence 3333468999999999986542 222223334333223443333310 00 0 012356788999999976653 32
Q ss_pred CCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL 239 (349)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~ 239 (349)
.. ..| +... .+.++.+++..++|+++ .+.+.++++.+.++|+|.|.++++|.+..
T Consensus 98 ~~-----------~~p------------~~~~~~~~i~~~~~~~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g~t~~ 153 (221)
T PRK01130 98 LR-----------PRP------------DGETLAELVKRIKEYPGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSGYTEE 153 (221)
T ss_pred CC-----------CCC------------CCCCHHHHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCceeecC
Confidence 10 001 0012 35577776645777775 56789999999999999998765443221
Q ss_pred --CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 240 --DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 240 --~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
......++.+.++++.+ ++||++.|||++++|+.+++++|||+|++|++++.
T Consensus 154 ~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 154 TKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred CCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 22334577888888877 79999999999999999999999999999998763
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-11 Score=116.28 Aligned_cols=146 Identities=25% Similarity=0.235 Sum_probs=99.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCc--CcccccCCC-CCCch-HHHHHHHHHhc--CCcEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF--LTLKNFQGL-DLGKM-DEDVKWLQTIT--KLPILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~--~~~~~~~~~-~~~~~-~~~i~~i~~~~--~~pv~vK~v 212 (349)
.+.+++++++|+|+|+||..+.. +-+.|..|.- -+...+.++ ....+ .+.++.+|+.+ +.||.+|..
T Consensus 144 ~~aA~~a~~aGfDgveih~~~gy-------L~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris 216 (327)
T cd02803 144 AAAARRAKEAGFDGVEIHGAHGY-------LLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLS 216 (327)
T ss_pred HHHHHHHHHcCCCEEEEcchhhh-------HHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEec
Confidence 35556777899999999986421 1222322210 000000011 11234 67899999988 689999986
Q ss_pred c--------CHH----HHHHHHHcCCCEEEEecCCCCCCC--------CchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 213 L--------TAE----DARIAVQAGAAGIIVSNHGARQLD--------YVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 213 ~--------~~~----~a~~a~~~G~d~I~v~~~gg~~~~--------~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
. +.+ .++.+.++|+|+|.+++....+.. .....++.+..+++.+ ++||+++|||++++
T Consensus 217 ~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~t~~ 294 (327)
T cd02803 217 ADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIAVGGIRDPE 294 (327)
T ss_pred hhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHH
Confidence 3 233 367888999999999764322111 1123456777777777 79999999999999
Q ss_pred HHHHHHHh-CCCEEEEchHHHH
Q 018919 273 DVFKALAL-GASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~-GA~~V~ig~~~l~ 293 (349)
++.++++. |||.|++||+++.
T Consensus 295 ~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 295 VAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHCCCCCeeeecHHHHh
Confidence 99999998 7999999999985
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=105.78 Aligned_cols=177 Identities=21% Similarity=0.181 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceE---EEEeecCCh--hHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 89 GEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF---FQLYVYKDR--NVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 89 ~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~---~Ql~~~~~~--~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
.-..+++++.+.|+..+ +-.+...++.+++...-|.. .+-|...+. +...+.++.+.++|++.+.+....-
T Consensus 28 ~i~~~a~~~~~~G~~~~-~~~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~--- 103 (219)
T cd04729 28 IMAAMALAAVQGGAVGI-RANGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDR--- 103 (219)
T ss_pred HHHHHHHHHHHCCCeEE-EcCCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCC---
Confidence 34589999999999754 32222223444433222322 111110000 1124577889999999877643210
Q ss_pred chhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC--CCC
Q 018919 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDY 241 (349)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~--~~~ 241 (349)
..|. +....+.++++++..++|+++ .+.++++++.+.++|+|.+.+.++|.+. ...
T Consensus 104 ----------~~p~-----------~~~~~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~ 161 (219)
T cd04729 104 ----------PRPD-----------GETLAELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKT 161 (219)
T ss_pred ----------CCCC-----------CcCHHHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCC
Confidence 0010 011156688888765688876 4678999999999999999776554322 122
Q ss_pred chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 242 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 242 ~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
..+.++.+.++++.+ ++||++.|||++++|+.+++++|||+|++|++++.
T Consensus 162 ~~~~~~~l~~i~~~~--~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 162 EDPDFELLKELRKAL--GIPVIAEGRINSPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred CCCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 334678888888877 79999999999999999999999999999999874
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-10 Score=100.71 Aligned_cols=181 Identities=18% Similarity=0.193 Sum_probs=123.8
Q ss_pred cccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC--CceEEEEe----ecCChhH--HHHHHHHHHHcCC
Q 018919 79 TAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQLY----VYKDRNV--VAQLVRRAERAGF 150 (349)
Q Consensus 79 m~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~--~~~~~Ql~----~~~~~~~--~~~~~~~~~~~G~ 150 (349)
..+..|..++...+||+||.+.|..++ ... +++++++... ...++-|. .+.+.-. +.+.++.+.++|+
T Consensus 24 l~~~pl~~~~iv~~mA~Aa~~gGAvgi-R~~---gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga 99 (229)
T COG3010 24 LPGEPLDSPEIVAAMALAAEQGGAVGI-RIE---GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGA 99 (229)
T ss_pred CCCCCCcchhHHHHHHHHHHhCCcceE-eec---chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCC
Confidence 334445566677799999999999865 333 3455544322 22334343 3222222 4677888899999
Q ss_pred CEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEE
Q 018919 151 KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGII 230 (349)
Q Consensus 151 ~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~ 230 (349)
+.|.+ |+. .|+| |. ..+-+.+++. +...-+.+-.+.+.|++..|.++|+|.|-
T Consensus 100 ~IIA~--DaT---~R~R--------P~------------~~~~~~i~~~--k~~~~l~MAD~St~ee~l~a~~~G~D~IG 152 (229)
T COG3010 100 DIIAF--DAT---DRPR--------PD------------GDLEELIARI--KYPGQLAMADCSTFEEGLNAHKLGFDIIG 152 (229)
T ss_pred cEEEe--ecc---cCCC--------Cc------------chHHHHHHHh--hcCCcEEEeccCCHHHHHHHHHcCCcEEe
Confidence 98875 543 2222 21 1113445552 23455777789999999999999999997
Q ss_pred EecCCCCC--CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 231 VSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 231 v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+-+|.+. .....+.++.++++.+. +++||+.|.+.||+++.+++.+||++|.||+++-.
T Consensus 153 TTLsGYT~~~~~~~~pDf~lvk~l~~~---~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITR 214 (229)
T COG3010 153 TTLSGYTGYTEKPTEPDFQLVKQLSDA---GCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITR 214 (229)
T ss_pred cccccccCCCCCCCCCcHHHHHHHHhC---CCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCC
Confidence 65555543 12234678888888773 79999999999999999999999999999998753
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-10 Score=110.28 Aligned_cols=220 Identities=18% Similarity=0.198 Sum_probs=132.2
Q ss_pred ceeEcCeecCcceeecccccccccCCh-----hhHHHHHHHHHcCCeEEecCCCCC--------------C---HH---H
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPE-----GEYATARAASAAGTIMTLSSWSTS--------------S---VE---E 116 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~-----~~~~la~aa~~~G~~~~~~~~~~~--------------~---~e---~ 116 (349)
..+|.+.++++-|+.|||... +. ++ ....+-+.-++.|..+++++.... + ++ +
T Consensus 4 P~~i~~~~lkNRiv~apm~~~-~~-~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~ 81 (343)
T cd04734 4 PLQLGHLTLRNRIVSTAHATN-YA-EDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRR 81 (343)
T ss_pred CeeeCCEEecCCeEECCcccc-cc-cCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHH
Confidence 467888999999999999632 22 22 234555556667787777543210 1 11 1
Q ss_pred HHhh---CCCceEEEEeec----------------CC----------h-----------hHHHHHHHHHHHcCCCEEEEe
Q 018919 117 VAST---GPGIRFFQLYVY----------------KD----------R-----------NVVAQLVRRAERAGFKAIALT 156 (349)
Q Consensus 117 i~~~---~~~~~~~Ql~~~----------------~~----------~-----------~~~~~~~~~~~~~G~~~i~i~ 156 (349)
+.+. .....++||+-. ++ . +...+.+++++++|+|+|+||
T Consensus 82 l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih 161 (343)
T cd04734 82 LAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQ 161 (343)
T ss_pred HHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 2211 124567787420 00 0 112345567778999999999
Q ss_pred cCCCCCCchhHHhhhhcCCCCcCccc---ccCCCCC-Cch-HHHHHHHHHhcCCcEEEEEec----------CH----HH
Q 018919 157 VDTPRLGRREADIKNRFTLPPFLTLK---NFQGLDL-GKM-DEDVKWLQTITKLPILVKGVL----------TA----ED 217 (349)
Q Consensus 157 ~d~p~~g~r~~d~~~~~~~p~~~~~~---~~~~~~~-~~~-~~~i~~i~~~~~~pv~vK~v~----------~~----~~ 217 (349)
... |. +-+.|..|. ..-+ -+.++.+ ..+ .+.++.+|+.++.++.+|... +. +.
T Consensus 162 ~ah---Gy----Ll~qFlsp~-~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~ 233 (343)
T cd04734 162 AAH---GH----LIDQFLSPL-TNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEI 233 (343)
T ss_pred ccc---ch----HHHHhhCCC-cCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHH
Confidence 842 11 112222221 0011 0111112 245 678999999987655555432 23 33
Q ss_pred HHHHHHcC-CCEEEEecCCCCCC----------CCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCE
Q 018919 218 ARIAVQAG-AAGIIVSNHGARQL----------DYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASG 284 (349)
Q Consensus 218 a~~a~~~G-~d~I~v~~~gg~~~----------~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~ 284 (349)
++.+.++| +|.|.|+....... .... ..++....+++.+ ++||+++|||++++++.++++.| ||+
T Consensus 234 ~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~D~ 311 (343)
T cd04734 234 AARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHADM 311 (343)
T ss_pred HHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCCCe
Confidence 57778898 89999963211110 1111 1356677777777 79999999999999999999965 999
Q ss_pred EEEchHHHH
Q 018919 285 IFIGRPVVY 293 (349)
Q Consensus 285 V~ig~~~l~ 293 (349)
|++||+++.
T Consensus 312 V~~gR~~la 320 (343)
T cd04734 312 VGMTRAHIA 320 (343)
T ss_pred eeecHHhHh
Confidence 999999985
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-10 Score=111.92 Aligned_cols=206 Identities=16% Similarity=0.154 Sum_probs=142.9
Q ss_pred cCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCC--------HHHHHhhCC--CceEEEEeecCChhHHH
Q 018919 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS--------VEEVASTGP--GIRFFQLYVYKDRNVVA 139 (349)
Q Consensus 70 ~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~--------~e~i~~~~~--~~~~~Ql~~~~~~~~~~ 139 (349)
+---.++||.+.. |++++++.|.++|+....|+|..+. --.+.+.++ ..+.+||-. ..++...
T Consensus 263 ~r~K~~LaPLTTv------GNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag-~~pdt~~ 335 (614)
T KOG2333|consen 263 FRDKKYLAPLTTV------GNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAG-SKPDTAA 335 (614)
T ss_pred cccceeecccccc------CCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEecc-CChHHHH
Confidence 3456889998654 4779999999999998888875321 112333333 678999976 4566555
Q ss_pred HHHHHHHH-cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEecC--
Q 018919 140 QLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLT-- 214 (349)
Q Consensus 140 ~~~~~~~~-~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~-- 214 (349)
+.++.+.+ ..+|.|.||++||.. +. |. ++-+.+. +..|.. ...++...... ++||.||+...
T Consensus 336 kaaq~i~e~~~VDFIDlN~GCPID------lv--y~--qG~GsAL---l~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~k 402 (614)
T KOG2333|consen 336 KAAQVIAETCDVDFIDLNMGCPID------LV--YR--QGGGSAL---LNRPARLIRILRAMNAVSGDIPITVKIRTGTK 402 (614)
T ss_pred HHHHHHHhhcceeeeeccCCCChh------ee--ec--cCCcchh---hcCcHHHHHHHHHHHHhccCCCeEEEEecccc
Confidence 55554443 478999999999842 11 11 1111110 123333 55566666656 46999999732
Q ss_pred ------HHHHHHHH-HcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC--CCEE
Q 018919 215 ------AEDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGI 285 (349)
Q Consensus 215 ------~~~a~~a~-~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G--A~~V 285 (349)
.+...... +.|+++|++++...-|.++-.+.|+.+.++++.++..+|+|++|.|-|.+|-.+.+..+ .+.|
T Consensus 403 eg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~sv 482 (614)
T KOG2333|consen 403 EGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSV 482 (614)
T ss_pred cCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceE
Confidence 23344455 89999999944433356677788999999999886569999999999999999988866 8999
Q ss_pred EEch-----HHHHHH
Q 018919 286 FIGR-----PVVYSL 295 (349)
Q Consensus 286 ~ig~-----~~l~~~ 295 (349)
||+| ||+|..
T Consensus 483 MIaRGALIKPWIFtE 497 (614)
T KOG2333|consen 483 MIARGALIKPWIFTE 497 (614)
T ss_pred EeeccccccchHhhh
Confidence 9999 787754
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.7e-10 Score=102.71 Aligned_cols=167 Identities=22% Similarity=0.249 Sum_probs=118.3
Q ss_pred hHHHHHHHHHcCCeEEecCC-------------CCCCHHHHHhhCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEE
Q 018919 90 EYATARAASAAGTIMTLSSW-------------STSSVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~-------------~~~~~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~ 154 (349)
+..-|+.|.++|...+.--. ...++++|.+... ....+-++. .+ . ...++.+.++|++.|
T Consensus 17 ~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K-~~--~-~~Ea~~L~eaGvDiI- 91 (283)
T cd04727 17 NAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVR-IG--H-FVEAQILEALGVDMI- 91 (283)
T ss_pred CHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeee-hh--H-HHHHHHHHHcCCCEE-
Confidence 45778999999988664311 0124455444322 222333332 11 1 566788899999997
Q ss_pred EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecC
Q 018919 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 155 i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~ 234 (349)
|+. .|.| | ..+.++.+|++++.|++. ++.+.++|.++.+.|+|.|-....
T Consensus 92 ---DaT---~r~r----------------------P-~~~~~~~iK~~~~~l~MA-D~stleEal~a~~~Gad~I~TTl~ 141 (283)
T cd04727 92 ---DES---EVLT----------------------P-ADEEHHIDKHKFKVPFVC-GARNLGEALRRISEGAAMIRTKGE 141 (283)
T ss_pred ---ecc---CCCC----------------------c-HHHHHHHHHHHcCCcEEc-cCCCHHHHHHHHHCCCCEEEecCC
Confidence 332 1111 1 135688888888888876 789999999999999999988776
Q ss_pred CCCCC------------------------C------CchhhHHHHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHhCC
Q 018919 235 GARQL------------------------D------YVPATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 235 gg~~~------------------------~------~~~~~~~~l~~i~~~~~~~ipvi--a~GGI~~~~dv~kal~~GA 282 (349)
|++.- . ...+.++.|.++++.+ ++||+ +.|||.+++++.+++.+||
T Consensus 142 gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GA 219 (283)
T cd04727 142 AGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGA 219 (283)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCC
Confidence 66532 0 1134678888888876 69997 9999999999999999999
Q ss_pred CEEEEchHHHH
Q 018919 283 SGIFIGRPVVY 293 (349)
Q Consensus 283 ~~V~ig~~~l~ 293 (349)
++|++|++++.
T Consensus 220 dgVaVGSAI~~ 230 (283)
T cd04727 220 DGVFVGSGIFK 230 (283)
T ss_pred CEEEEcHHhhc
Confidence 99999999974
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-10 Score=107.95 Aligned_cols=146 Identities=23% Similarity=0.262 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCc-CcccccCC-C-CCCch-HHHHHHHHHhc--CCcEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF-LTLKNFQG-L-DLGKM-DEDVKWLQTIT--KLPILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~-~~~~~~~~-~-~~~~~-~~~i~~i~~~~--~~pv~vK~v 212 (349)
.+.++++.++|+|+++||..+-. +-+.|..|.. ..-....+ + ..+.+ .+.++.+|+.+ +.||.+|..
T Consensus 157 ~~aA~~a~~aGfDgVei~~~~gy-------Ll~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~ 229 (336)
T cd02932 157 VAAARRAVEAGFDVIEIHAAHGY-------LLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRIS 229 (336)
T ss_pred HHHHHHHHHcCCCEEEEcccccc-------HHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEc
Confidence 34556777899999999987621 1122322310 00000111 1 23445 68899999998 689999965
Q ss_pred c--------CHH----HHHHHHHcCCCEEEEecCCCC--CC-CCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 018919 213 L--------TAE----DARIAVQAGAAGIIVSNHGAR--QL-DYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 276 (349)
Q Consensus 213 ~--------~~~----~a~~a~~~G~d~I~v~~~gg~--~~-~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k 276 (349)
. +.+ .++.+.+.|+|.|.++..+.. +. ...+ ..++.+.++++.+ ++||+++|||.+++++.+
T Consensus 230 ~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~G~i~t~~~a~~ 307 (336)
T cd02932 230 ATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA--GIPVIAVGLITDPEQAEA 307 (336)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhC--CCCEEEeCCCCCHHHHHH
Confidence 2 343 356678899999999753322 11 1111 1346667777776 799999999999999999
Q ss_pred HHHhC-CCEEEEchHHHH
Q 018919 277 ALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 277 al~~G-A~~V~ig~~~l~ 293 (349)
+|+.| ||+|++||+++.
T Consensus 308 ~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 308 ILESGRADLVALGRELLR 325 (336)
T ss_pred HHHcCCCCeehhhHHHHh
Confidence 99988 999999999985
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-09 Score=103.89 Aligned_cols=145 Identities=19% Similarity=0.166 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCc--CcccccCCCCC-Cch-HHHHHHHHHhc--CCcEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF--LTLKNFQGLDL-GKM-DEDVKWLQTIT--KLPILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~--~~~~~~~~~~~-~~~-~~~i~~i~~~~--~~pv~vK~v 212 (349)
.+.+++++++|+|+|+||..+- + +-++|..|.. -+..-+.++.+ ..| .+.|+.+|+.+ +.||.+|..
T Consensus 147 ~~AA~~a~~aGfDgVeih~ahG---y----Ll~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis 219 (361)
T cd04747 147 ARAAADARRLGFDGIELHGAHG---Y----LIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFS 219 (361)
T ss_pred HHHHHHHHHcCCCEEEEecccc---h----HHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEC
Confidence 3455677789999999998762 1 2223322210 00000111112 245 68899999998 479999986
Q ss_pred c------------CHHH----HHHHHHcCCCEEEEecCCC-CCCCCchhhHHHHHHHHHHhcCCCcEEEecCC-------
Q 018919 213 L------------TAED----ARIAVQAGAAGIIVSNHGA-RQLDYVPATIMALEEVVKATQGRIPVFLDGGV------- 268 (349)
Q Consensus 213 ~------------~~~~----a~~a~~~G~d~I~v~~~gg-~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI------- 268 (349)
. ++++ ++.+.++|+|.|.++...- .+...+ ..+....++++.+ ++||++.|+|
T Consensus 220 ~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~-~~~~~~~~~k~~~--~~pv~~~G~i~~~~~~~ 296 (361)
T cd04747 220 QWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEG-SELNLAGWTKKLT--GLPTITVGSVGLDGDFI 296 (361)
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCc-cchhHHHHHHHHc--CCCEEEECCcccccccc
Confidence 2 2233 4556889999998875311 111111 1344555666665 7999999999
Q ss_pred -----------CCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 269 -----------RRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 269 -----------~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
++++++.++|+.| ||+|++||+++.
T Consensus 297 ~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 297 GAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred cccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 6999999999975 999999999985
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-09 Score=98.07 Aligned_cols=167 Identities=21% Similarity=0.211 Sum_probs=116.7
Q ss_pred hHHHHHHHHHcCCeEEecCCC-------------CCCHHHHHhhCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEE
Q 018919 90 EYATARAASAAGTIMTLSSWS-------------TSSVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~-------------~~~~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~ 154 (349)
+..-|+.|.++|...+..-.. ..++++|.+... ....+-+.. . +. ...++.++++|+|.|
T Consensus 19 ~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~~k-i--gh-~~Ea~~L~~~GvDiI- 93 (287)
T TIGR00343 19 NPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAKVR-I--GH-FVEAQILEALGVDYI- 93 (287)
T ss_pred CHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEEee-c--cH-HHHHHHHHHcCCCEE-
Confidence 457889999999887653211 123444433221 122222221 1 11 456778889999997
Q ss_pred EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecC
Q 018919 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 155 i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~ 234 (349)
|+.. |. .| ..+.+..+|++++.|+++ ++.+.++|.++.+.|+|.|-..+.
T Consensus 94 ---DeTe---~l----------------------rP-ade~~~~~K~~f~vpfma-d~~~l~EAlrai~~GadmI~Tt~e 143 (287)
T TIGR00343 94 ---DESE---VL----------------------TP-ADWTFHIDKKKFKVPFVC-GARDLGEALRRINEGAAMIRTKGE 143 (287)
T ss_pred ---EccC---CC----------------------Cc-HHHHHHHHHHHcCCCEEc-cCCCHHHHHHHHHCCCCEEecccc
Confidence 3321 11 11 135678888888999986 689999999999999999988876
Q ss_pred CCCCC---------------------C----------CchhhHHHHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHhC
Q 018919 235 GARQL---------------------D----------YVPATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALG 281 (349)
Q Consensus 235 gg~~~---------------------~----------~~~~~~~~l~~i~~~~~~~ipvi--a~GGI~~~~dv~kal~~G 281 (349)
||+.. . .-.+.++.|.++++.. ++||+ +.|||.|++|+.+++.+|
T Consensus 144 ~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melG 221 (287)
T TIGR00343 144 AGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLG 221 (287)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcC
Confidence 66531 0 0124678888888765 79998 999999999999999999
Q ss_pred CCEEEEchHHHH
Q 018919 282 ASGIFIGRPVVY 293 (349)
Q Consensus 282 A~~V~ig~~~l~ 293 (349)
|++|.+|++++.
T Consensus 222 AdGVaVGSaI~k 233 (287)
T TIGR00343 222 ADGVFVGSGIFK 233 (287)
T ss_pred CCEEEEhHHhhc
Confidence 999999999874
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-09 Score=97.80 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=101.3
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCC---Cchh-----HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh-
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRL---GRRE-----ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI- 202 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~---g~r~-----~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~- 202 (349)
.|.+.+.+.++.+.+.|+|.|++.+...-+ |.-. +-++++ .+.+. ++.++++|+.
T Consensus 21 P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G---------------~~~~~~~~~v~~ir~~~ 85 (256)
T TIGR00262 21 PTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAG---------------MTPEKCFELLKKVRQKH 85 (256)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcC---------------CCHHHHHHHHHHHHhcC
Confidence 466778899999999999999987743111 1000 111111 12223 7889999977
Q ss_pred cCCcEEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCC---------CC-------------
Q 018919 203 TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ------------- 238 (349)
Q Consensus 203 ~~~pv~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg---------~~------------- 238 (349)
.++|++.-+..++ +.++.+.++|+|+|++.- +|- +.
T Consensus 86 ~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~g 165 (256)
T TIGR00262 86 PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQG 165 (256)
T ss_pred CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCC
Confidence 6899876666665 458889999999998851 110 00
Q ss_pred ------C--CCc------hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 239 ------L--DYV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 239 ------~--~~~------~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
. .+| +...+.+.++++.. +.||+++|||++++++.++...|||+|.+||+++..+.
T Consensus 166 fiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~ 235 (256)
T TIGR00262 166 FVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIE 235 (256)
T ss_pred CEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 0 012 22345666666654 67999999999999999999999999999999987553
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=105.16 Aligned_cols=144 Identities=19% Similarity=0.107 Sum_probs=98.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC--cCcccccCCCCC-Cch-HHHHHHHHHhcCC-cEEEEEec
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP--FLTLKNFQGLDL-GKM-DEDVKWLQTITKL-PILVKGVL 213 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~--~~~~~~~~~~~~-~~~-~~~i~~i~~~~~~-pv~vK~v~ 213 (349)
.+.+++++++|+|+|+||..+- + +-+.|..|. +-+..-+.++.+ ..| .+.++.+|+.++. ||.+|...
T Consensus 155 ~~aA~~a~~aGfDgVeih~ahG---y----Ll~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~ 227 (338)
T cd02933 155 RQAARNAIEAGFDGVEIHGANG---Y----LIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSP 227 (338)
T ss_pred HHHHHHHHHcCCCEEEEccccc---h----hHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECc
Confidence 3556677789999999998762 1 222333331 001111111112 245 6889999998855 89999852
Q ss_pred -----------CH----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH
Q 018919 214 -----------TA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 278 (349)
Q Consensus 214 -----------~~----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal 278 (349)
+. +.++.+.+.|+|.|.|+. |..........++...++++.+ ++||+++|||+ ++++.+++
T Consensus 228 ~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~-g~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~-~~~a~~~l 303 (338)
T cd02933 228 FGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVE-PRVAGNPEDQPPDFLDFLRKAF--KGPLIAAGGYD-AESAEAAL 303 (338)
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCCCCcccccchHHHHHHHHHc--CCCEEEECCCC-HHHHHHHH
Confidence 33 346778889999999964 2221112334567777888887 79999999997 99999999
Q ss_pred HhC-CCEEEEchHHHH
Q 018919 279 ALG-ASGIFIGRPVVY 293 (349)
Q Consensus 279 ~~G-A~~V~ig~~~l~ 293 (349)
+.| ||+|++||+++.
T Consensus 304 ~~g~~D~V~~gR~~la 319 (338)
T cd02933 304 ADGKADLVAFGRPFIA 319 (338)
T ss_pred HcCCCCEEEeCHhhhh
Confidence 976 999999999984
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-08 Score=95.26 Aligned_cols=150 Identities=17% Similarity=0.139 Sum_probs=98.9
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc-----ccCCCCCCch-HHHHHHHHHhcCCc
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK-----NFQGLDLGKM-DEDVKWLQTITKLP 206 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~-----~~~~~~~~~~-~~~i~~i~~~~~~p 206 (349)
.|.+.+.+.++.+.+.|+|.|+|.+....+ +-+|.... .+..-.+.+. ++.++++|+..++|
T Consensus 26 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP------------~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p 93 (263)
T CHL00200 26 PDIVITKKALKILDKKGADIIELGIPYSDP------------LADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP 93 (263)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCC------------CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 466788899999999999999987743211 00111110 0000112233 78899999878899
Q ss_pred EEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCC---------CC-----------------
Q 018919 207 ILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ----------------- 238 (349)
Q Consensus 207 v~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg---------~~----------------- 238 (349)
+++-+..|+ ...+.|.++|+|++++.- +|- +.
T Consensus 94 ~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~ 173 (263)
T CHL00200 94 IVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYL 173 (263)
T ss_pred EEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 876665443 357889999999999851 110 00
Q ss_pred ----CCCch-----h-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 239 ----LDYVP-----A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 239 ----~~~~~-----~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.-+|. . ..+.+.++++.. +.||.+.+||++++++.++...|||+|.+|++++..+.
T Consensus 174 vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~ 239 (263)
T CHL00200 174 VSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILL 239 (263)
T ss_pred EcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHH
Confidence 00121 1 123344444433 79999999999999999999999999999999986554
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=97.63 Aligned_cols=131 Identities=18% Similarity=0.237 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecC-CCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVD-TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV- 212 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d-~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v- 212 (349)
.....++++..++.|+++|-+..+ ... ....+.++.+++..++||++|+.
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~~----------------------------~g~~~~~~~i~~~v~iPi~~~~~i 81 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEPKYF----------------------------QGSLEDLRAVREAVSLPVLRKDFI 81 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCcccc----------------------------CCCHHHHHHHHHhcCCCEEECCee
Confidence 344677889999999999865322 110 00146677777777889888874
Q ss_pred cCHHHHHHHHHcCCCEEEEecCCCC--------------CC------------------------------CCchhhHHH
Q 018919 213 LTAEDARIAVQAGAAGIIVSNHGAR--------------QL------------------------------DYVPATIMA 248 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~~~gg~--------------~~------------------------------~~~~~~~~~ 248 (349)
.+.++++.+.++|+|+|.+....-. .+ ....+.++.
T Consensus 82 ~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~ 161 (217)
T cd00331 82 IDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDLKTFEVDLNT 161 (217)
T ss_pred cCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCccccCcCHHH
Confidence 5566888888899998886421100 00 001223455
Q ss_pred HHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 249 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 249 l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.++++.++.++||++.|||++++|+.+++.+||++|.+|++++.
T Consensus 162 ~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 162 TERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred HHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 666666543468999999999999999999999999999999875
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.5e-09 Score=100.95 Aligned_cols=223 Identities=17% Similarity=0.106 Sum_probs=132.1
Q ss_pred ceeEcCeecCcceeeccccccc--ccCC-hhhHHHHHHHHHcCCeEEecCCCCC--------------C---HH---HHH
Q 018919 62 NTTVLGFKISMPIMIAPTAMQK--MAHP-EGEYATARAASAAGTIMTLSSWSTS--------------S---VE---EVA 118 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~--l~~~-~~~~~la~aa~~~G~~~~~~~~~~~--------------~---~e---~i~ 118 (349)
..+|.++++++-|+.|||.... ...+ +....+-+.-++.|+.+++++.... + ++ ++.
T Consensus 4 P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~ 83 (353)
T cd02930 4 PLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLIT 83 (353)
T ss_pred CeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHH
Confidence 4678899999999999996211 1112 2334555666667888776543100 1 11 121
Q ss_pred hh---CCCceEEEEeec------------C--------------Ch-------hHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 119 ST---GPGIRFFQLYVY------------K--------------DR-------NVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 119 ~~---~~~~~~~Ql~~~------------~--------------~~-------~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
+. .....++||.-. . +. +...+.+++++++|+|+|+|+...
T Consensus 84 ~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ah--- 160 (353)
T cd02930 84 DAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSE--- 160 (353)
T ss_pred HHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc---
Confidence 11 124567887221 0 00 113355667778999999997632
Q ss_pred CchhHHhhhhcCCCCc--CcccccCCCC-CCch-HHHHHHHHHhcCC--cEEEEEe--------cCHH----HHHHHHHc
Q 018919 163 GRREADIKNRFTLPPF--LTLKNFQGLD-LGKM-DEDVKWLQTITKL--PILVKGV--------LTAE----DARIAVQA 224 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~--~~~~~~~~~~-~~~~-~~~i~~i~~~~~~--pv~vK~v--------~~~~----~a~~a~~~ 224 (349)
|+ +-+.|..|.. -+..-+.++. ...+ .+.++.+|+.++. +|.+|.. .+.+ .++.+.++
T Consensus 161 Gy----Ll~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~ 236 (353)
T cd02930 161 GY----LINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAA 236 (353)
T ss_pred ch----HHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHc
Confidence 11 2223332310 0000011111 1345 6789999999854 5665553 1333 35778889
Q ss_pred CCCEEEEec--CCCCCC----CCchh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 225 GAAGIIVSN--HGARQL----DYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 225 G~d~I~v~~--~gg~~~----~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
|+|.|.|+. +..+.. ..... ......++++.+ ++||+++|+|++++++.++++.| +|+|++||+++.
T Consensus 237 G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 237 GADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV--DIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred CCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 999999974 222111 11111 234456777776 79999999999999999999976 999999999985
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-08 Score=107.89 Aligned_cols=144 Identities=24% Similarity=0.191 Sum_probs=93.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC--cCcccccCCCC-CCch-HHHHHHHHHhc--CCcEEEEEec
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP--FLTLKNFQGLD-LGKM-DEDVKWLQTIT--KLPILVKGVL 213 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~--~~~~~~~~~~~-~~~~-~~~i~~i~~~~--~~pv~vK~v~ 213 (349)
+.+++++++|+|+|+||... |+ +-+.|..|. .-+..-+.++. ...+ .+.++.+|+.+ +.||.+|+..
T Consensus 555 ~aA~~a~~aGfDgveih~ah---Gy----Ll~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~ 627 (765)
T PRK08255 555 AAARRAAEAGFDWLELHCAH---GY----LLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISA 627 (765)
T ss_pred HHHHHHHHcCCCEEEEeccc---ch----HHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcc
Confidence 45567778999999999872 10 111222221 00000011111 1245 68899999987 4799999863
Q ss_pred --------CH----HHHHHHHHcCCCEEEEecCCCCCC----CCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 018919 214 --------TA----EDARIAVQAGAAGIIVSNHGARQL----DYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 276 (349)
Q Consensus 214 --------~~----~~a~~a~~~G~d~I~v~~~gg~~~----~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k 276 (349)
+. +.++.+.++|+|.|.|+.. ++.. ..++ .......++++.+ ++||++.|+|++++++.+
T Consensus 628 ~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g-~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pv~~~G~i~~~~~a~~ 704 (765)
T PRK08255 628 HDWVEGGNTPDDAVEIARAFKAAGADLIDVSSG-QVSKDEKPVYGRMYQTPFADRIRNEA--GIATIAVGAISEADHVNS 704 (765)
T ss_pred ccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCC-CCCcCCCCCcCccccHHHHHHHHHHc--CCEEEEeCCCCCHHHHHH
Confidence 23 3467788999999999632 2110 0111 1233445666666 799999999999999999
Q ss_pred HHHhC-CCEEEEchHHHH
Q 018919 277 ALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 277 al~~G-A~~V~ig~~~l~ 293 (349)
+|+.| ||+|++||+++.
T Consensus 705 ~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 705 IIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHcCCcceeeEcHHHHh
Confidence 99965 999999999985
|
|
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=106.49 Aligned_cols=148 Identities=20% Similarity=0.180 Sum_probs=93.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCc--CcccccCCCC-CCch-HHHHHHHHHhcC----C--cEE
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF--LTLKNFQGLD-LGKM-DEDVKWLQTITK----L--PIL 208 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~--~~~~~~~~~~-~~~~-~~~i~~i~~~~~----~--pv~ 208 (349)
.+.+++++++|+|+|+||..+ |+ +-+.|..|.. -+..-+.++. ...+ .+.++.+|+.++ . ||.
T Consensus 147 ~~aA~~a~~aGfDgVeih~ah---Gy----Ll~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~ 219 (353)
T cd04735 147 GEATRRAIEAGFDGVEIHGAN---GY----LIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILG 219 (353)
T ss_pred HHHHHHHHHcCCCEEEEcccc---ch----HHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEE
Confidence 355667778999999999753 11 1122322210 0000011111 2245 688999999875 3 455
Q ss_pred EEEec--------CH----HHHHHHHHcCCCEEEEecCCCCC--CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 018919 209 VKGVL--------TA----EDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 274 (349)
Q Consensus 209 vK~v~--------~~----~~a~~a~~~G~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv 274 (349)
+|... +. +.++.+.++|+|.|.|+..+.+. ..........+..+++.++.++|||+.|||++++++
T Consensus 220 ~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~a 299 (353)
T cd04735 220 YRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDA 299 (353)
T ss_pred EEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHH
Confidence 55431 22 33577889999999997543221 111112344455566655447999999999999999
Q ss_pred HHHHHhCCCEEEEchHHHH
Q 018919 275 FKALALGASGIFIGRPVVY 293 (349)
Q Consensus 275 ~kal~~GA~~V~ig~~~l~ 293 (349)
.++++.|||+|++||+++.
T Consensus 300 e~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 300 LEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHHcCCChHHHhHHHHh
Confidence 9999999999999999985
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-08 Score=97.00 Aligned_cols=145 Identities=14% Similarity=0.076 Sum_probs=90.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC--cCcccccCCCC-CCch-HHHHHHHHHhcCC--cEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP--FLTLKNFQGLD-LGKM-DEDVKWLQTITKL--PILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~--~~~~~~~~~~~-~~~~-~~~i~~i~~~~~~--pv~vK~v 212 (349)
.+.+++++++|+|+|+||..+-. +-++|..|. +-+..-+.++. ...| .+.++.+|+.++. ||.+|+.
T Consensus 153 ~~AA~ra~~aGfDgVEih~ahGy-------Ll~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls 225 (370)
T cd02929 153 VDAALRARDAGFDIVYVYAAHGY-------LPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFS 225 (370)
T ss_pred HHHHHHHHHcCCCEEEEcccccc-------hHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEec
Confidence 34556777899999999987621 122232221 00111111121 2345 7889999999854 5555543
Q ss_pred c----------CHHH----HHHHHHcCCCEEEEecCCC----CCCCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 213 L----------TAED----ARIAVQAGAAGIIVSNHGA----RQLDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 213 ~----------~~~~----a~~a~~~G~d~I~v~~~gg----~~~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
. +.++ ++.+.+ .+|.+.++...- ..... ....++...++++.+ ++||++.|||++++
T Consensus 226 ~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~ 302 (370)
T cd02929 226 VDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT--SKPVVGVGRFTSPD 302 (370)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCccccHHHHHHHHHHC--CCCEEEeCCCCCHH
Confidence 1 2333 234444 489998864210 00000 111245566777766 79999999999999
Q ss_pred HHHHHHHhC-CCEEEEchHHHH
Q 018919 273 DVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~G-A~~V~ig~~~l~ 293 (349)
++.++|+.| ||+|++||+++.
T Consensus 303 ~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 303 KMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHcCCCCeeeechHhhh
Confidence 999999976 999999999984
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.3e-09 Score=101.59 Aligned_cols=146 Identities=20% Similarity=0.226 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC--cCcccccCCCC-CCch-HHHHHHHHHhc--CCcEEEEEec
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP--FLTLKNFQGLD-LGKM-DEDVKWLQTIT--KLPILVKGVL 213 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~--~~~~~~~~~~~-~~~~-~~~i~~i~~~~--~~pv~vK~v~ 213 (349)
+.+++++++|+|+|+||.... |. +-+.|..|. +-+..-+.++. ...| .+.|+.+|+.+ +.||.+|...
T Consensus 154 ~AA~ra~~AGfDgVEih~ah~--Gy----Ll~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~ 227 (382)
T cd02931 154 ESAVIAKEAGFDGVEIHAVHE--GY----LLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSV 227 (382)
T ss_pred HHHHHHHHcCCCEEEEecccc--Ch----HHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 455677789999999987320 11 123333231 00111111111 2345 78899999998 5689999763
Q ss_pred ----------------------CHH----HHHHHHHcCCCEEEEecCCCCCCC-C------chh-hHHHHHHHHHHhcCC
Q 018919 214 ----------------------TAE----DARIAVQAGAAGIIVSNHGARQLD-Y------VPA-TIMALEEVVKATQGR 259 (349)
Q Consensus 214 ----------------------~~~----~a~~a~~~G~d~I~v~~~gg~~~~-~------~~~-~~~~l~~i~~~~~~~ 259 (349)
+.+ .++.+.++|+|.|.|+.....+.. . .+. .+.....+++.+ +
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ 305 (382)
T cd02931 228 KSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV--D 305 (382)
T ss_pred hhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC--C
Confidence 223 357778899999999642211111 1 111 134566677776 7
Q ss_pred CcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 260 IPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 260 ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
+||+++|||++++++.++|+.| ||+|++||+++.
T Consensus 306 ~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 306 VPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 9999999999999999999976 999999999985
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-08 Score=90.72 Aligned_cols=150 Identities=19% Similarity=0.210 Sum_probs=99.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc-----cCCCCCCch-HHHHHHHHHhcCCc
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN-----FQGLDLGKM-DEDVKWLQTITKLP 206 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~-----~~~~~~~~~-~~~i~~i~~~~~~p 206 (349)
.|.+.+.+.++.+.+.|+|.|+|.+....+- -+|..+.. ...-.+.+. ++.++++|+..++|
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~------------aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p 80 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPL------------ADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCP 80 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCc------------ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 4677788999999999999999876432110 01111000 000012223 78899999778899
Q ss_pred EEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCC-------------C--------------
Q 018919 207 ILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA-------------R-------------- 237 (349)
Q Consensus 207 v~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg-------------~-------------- 237 (349)
+++-...|+ +..+.|.++|+|++++-. ||- |
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~ 160 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYL 160 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEE
Confidence 877665443 347889999999998841 110 0
Q ss_pred ----CCCC---c-hhh-HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 238 ----QLDY---V-PAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 238 ----~~~~---~-~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
...+ + +.. .+.+.++++.. ++||+...||++++|+.+++..|||+|.+||+++....
T Consensus 161 Vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i~ 226 (250)
T PLN02591 161 VSSTGVTGARASVSGRVESLLQELKEVT--DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALG 226 (250)
T ss_pred eeCCCCcCCCcCCchhHHHHHHHHHhcC--CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhhh
Confidence 0001 1 222 23456665543 89999999999999999999999999999999987543
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.9e-09 Score=101.25 Aligned_cols=146 Identities=23% Similarity=0.288 Sum_probs=97.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCc--CcccccCCCC-CCch-HHHHHHHHHhc--CCcEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF--LTLKNFQGLD-LGKM-DEDVKWLQTIT--KLPILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~--~~~~~~~~~~-~~~~-~~~i~~i~~~~--~~pv~vK~v 212 (349)
.+.+++++++|+|+|+||..+- .+-+.|..|.- -+..-+.++. ...| .+.|+.+|+.+ +.||.+|..
T Consensus 152 ~~aA~ra~~aGfDgVeih~a~g-------yLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris 224 (338)
T cd04733 152 AHAARLAQEAGFDGVQIHAAHG-------YLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLN 224 (338)
T ss_pred HHHHHHHHHcCCCEEEEchhhh-------hHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEc
Confidence 4566777889999999998751 12223322310 0001011111 2345 68899999998 479999985
Q ss_pred --------cCHHH----HHHHHHcCCCEEEEecCCCCCCCCc---------h--hhHHHHHHHHHHhcCCCcEEEecCCC
Q 018919 213 --------LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---------P--ATIMALEEVVKATQGRIPVFLDGGVR 269 (349)
Q Consensus 213 --------~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~---------~--~~~~~l~~i~~~~~~~ipvia~GGI~ 269 (349)
.+.++ ++.+.++|+|.|.|+.....+.... + ..++...++++.+ ++||+++|+|.
T Consensus 225 ~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~ 302 (338)
T cd04733 225 SADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT--KTPLMVTGGFR 302 (338)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc--CCCEEEeCCCC
Confidence 24433 5778889999999964221111100 0 1245566777777 79999999999
Q ss_pred CHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 270 RGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 270 ~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
+.+++.++++.| ||.|++||+++.
T Consensus 303 t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 303 TRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred CHHHHHHHHHcCCCCeeeeChHhhh
Confidence 999999999986 999999999984
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-08 Score=94.51 Aligned_cols=130 Identities=16% Similarity=0.206 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCH
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTA 215 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~ 215 (349)
...++++..++.|++++-+..+.... ..-.++++.+++.+++||+.|.. .++
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f---------------------------~g~~~~l~~v~~~v~iPvl~kdfi~~~ 123 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFF---------------------------QGSLEYLRAARAAVSLPVLRKDFIIDP 123 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccC---------------------------CCCHHHHHHHHHhcCCCEEeeeecCCH
Confidence 34577888899999998765443110 00157888888888999999985 566
Q ss_pred HHHHHHHHcCCCEEEEecCCCC--------------------------------------------CCCCchhhHHHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGAR--------------------------------------------QLDYVPATIMALEE 251 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~--------------------------------------------~~~~~~~~~~~l~~ 251 (349)
.++..+.++|||+|.+...--+ .+..-.+.++...+
T Consensus 124 ~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~ 203 (260)
T PRK00278 124 YQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTER 203 (260)
T ss_pred HHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHH
Confidence 7888899999999988632100 00011223555666
Q ss_pred HHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 252 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 252 i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.+.+++..++|+.|||.+++|+.+++.+|||+|.||++++.
T Consensus 204 l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 204 LAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred HHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 666654457999999999999999999999999999999985
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-08 Score=89.59 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=111.5
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCC-CCcCccc-----c----------cCC-CC
Q 018919 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PPFLTLK-----N----------FQG-LD 188 (349)
Q Consensus 126 ~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~-p~~~~~~-----~----------~~~-~~ 188 (349)
.+-+....+.+.....++.+.+.|+..++||+++|..-.-.+.++..|.. | ++..- + +.. ..
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p-~~~vGaGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDP-EVLIGAGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCC-CeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence 34445556788888899999999999999999988654445666655531 1 11100 0 000 45
Q ss_pred CCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecC
Q 018919 189 LGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 267 (349)
Q Consensus 189 ~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 267 (349)
.|.+ -+.++..+ ..++|++- ++.|+.++..+.++|+|.|.++..+ ..| ...+..++..++ ++|+++.||
T Consensus 94 sP~~~~~v~~~~~-~~~i~~iP-G~~T~~E~~~A~~~Gad~vklFPa~----~~G---~~~ik~l~~~~p-~ip~~atGG 163 (213)
T PRK06552 94 SPSFNRETAKICN-LYQIPYLP-GCMTVTEIVTALEAGSEIVKLFPGS----TLG---PSFIKAIKGPLP-QVNVMVTGG 163 (213)
T ss_pred CCCCCHHHHHHHH-HcCCCEEC-CcCCHHHHHHHHHcCCCEEEECCcc----cCC---HHHHHHHhhhCC-CCEEEEECC
Confidence 6766 45566555 56999875 7899999999999999999995311 122 345666655553 699999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 268 VRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 268 I~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
|. .+++.+++++||++|.+|+.++.
T Consensus 164 I~-~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 164 VN-LDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred CC-HHHHHHHHHCCCcEEEEchHHhC
Confidence 98 59999999999999999999964
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6e-08 Score=94.03 Aligned_cols=145 Identities=28% Similarity=0.337 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc---cCCCCCC-ch-HHHHHHHHHhcCC--cEEEEE
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN---FQGLDLG-KM-DEDVKWLQTITKL--PILVKG 211 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~---~~~~~~~-~~-~~~i~~i~~~~~~--pv~vK~ 211 (349)
.+.+++++++|+|+++||--. | .+-++|-.|- ..-+. +.++.++ .| .+.++.+|+.++. ||.+++
T Consensus 152 ~~AA~rA~~AGFDgVEIH~Ah---G----YLi~qFlsp~-tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rl 223 (363)
T COG1902 152 ARAARRAKEAGFDGVEIHGAH---G----YLLSQFLSPL-TNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRL 223 (363)
T ss_pred HHHHHHHHHcCCCEEEEeecc---c----hHHHHhcCCc-cCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 456678888999999998643 2 2334443331 01110 1112222 34 6889999999954 788887
Q ss_pred ec---------CH----HHHHHHHHcC-CCEEEEecCCCC---CCCCc-h-hhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 212 VL---------TA----EDARIAVQAG-AAGIIVSNHGAR---QLDYV-P-ATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 212 v~---------~~----~~a~~a~~~G-~d~I~v~~~gg~---~~~~~-~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
.. +. +.++.+.+.| +|.|.++..+.. ..... + ........++... ++|+|++|+|++++
T Consensus 224 s~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~--~~pvi~~G~i~~~~ 301 (363)
T COG1902 224 SPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV--RIPVIAVGGINDPE 301 (363)
T ss_pred CccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc--CCCEEEeCCCCCHH
Confidence 53 22 3477888999 799999853221 11111 1 1123334455554 69999999999999
Q ss_pred HHHHHHHhC-CCEEEEchHHHH
Q 018919 273 DVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~G-A~~V~ig~~~l~ 293 (349)
.+.++|+.| ||.|.+||+|+.
T Consensus 302 ~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 302 QAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred HHHHHHHcCCCCEEEechhhhc
Confidence 999999998 999999999985
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.1e-08 Score=89.90 Aligned_cols=147 Identities=19% Similarity=0.209 Sum_probs=97.8
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCC---Cchh-----HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHH-Hh
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRL---GRRE-----ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQ-TI 202 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~---g~r~-----~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~-~~ 202 (349)
.|.+.+.+.++.+.+.|++.|+|.+....+ |.-. +-++++ .+.+. ++.++++| +.
T Consensus 23 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G---------------~~~~~~~~~~~~~r~~~ 87 (258)
T PRK13111 23 PDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAG---------------VTLADVFELVREIREKD 87 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcC---------------CCHHHHHHHHHHHHhcC
Confidence 466788899999999999999987643211 1000 111111 12222 67888888 44
Q ss_pred cCCcEEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCC---------C-------------C
Q 018919 203 TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------R-------------Q 238 (349)
Q Consensus 203 ~~~pv~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg---------~-------------~ 238 (349)
.++|+++-...++ +..+.|.++|+|++.+-. +|- + .
T Consensus 88 ~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~g 167 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASG 167 (258)
T ss_pred CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCC
Confidence 6889876665443 447889999999998841 110 0 0
Q ss_pred ------C--CCc-----hh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 239 ------L--DYV-----PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 239 ------~--~~~-----~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
. .+| +. ..+.+.++++.. ++||++.+||++++|+.+++.. ||+|.+|++++..+..
T Consensus 168 fIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~~~ 237 (258)
T PRK13111 168 FVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKIIEE 237 (258)
T ss_pred cEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHHHh
Confidence 0 011 11 234666776654 7999999999999999998875 9999999999876543
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=93.68 Aligned_cols=122 Identities=23% Similarity=0.282 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDA 218 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a 218 (349)
...++.++++|+|.|. +.. |. .| ..+.+..+|+.++.|+++ ++.+.++|
T Consensus 86 ~~Ea~~L~~~GvDiID----~Te---~l----------------------rp-ad~~~~~~K~~f~~~fma-d~~~l~EA 134 (293)
T PRK04180 86 FVEAQILEALGVDYID----ESE---VL----------------------TP-ADEEYHIDKWDFTVPFVC-GARNLGEA 134 (293)
T ss_pred HHHHHHHHHcCCCEEe----ccC---CC----------------------Cc-hHHHHHHHHHHcCCCEEc-cCCCHHHH
Confidence 4567788899999873 321 11 11 135688888888999986 68999999
Q ss_pred HHHHHcCCCEEEEecCCCCC------------------CC------------CchhhHHHHHHHHHHhcCCCcEE--Eec
Q 018919 219 RIAVQAGAAGIIVSNHGARQ------------------LD------------YVPATIMALEEVVKATQGRIPVF--LDG 266 (349)
Q Consensus 219 ~~a~~~G~d~I~v~~~gg~~------------------~~------------~~~~~~~~l~~i~~~~~~~ipvi--a~G 266 (349)
.++.+.|+|.|-..+..|+. +. .-.+.++.|.++++.. ++||+ +.|
T Consensus 135 lrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~--~iPVV~~AeG 212 (293)
T PRK04180 135 LRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG--RLPVVNFAAG 212 (293)
T ss_pred HHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC--CCCEEEEEeC
Confidence 99999999999887433321 00 0234678888888866 79998 999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 267 GVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 267 GI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
||.+++|+.+++.+||++|++|++++.
T Consensus 213 GI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 213 GIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 999999999999999999999999874
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-07 Score=85.72 Aligned_cols=150 Identities=20% Similarity=0.231 Sum_probs=101.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc-----ccCCCCCCch-HHHHHHHHHh-cCC
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK-----NFQGLDLGKM-DEDVKWLQTI-TKL 205 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~-----~~~~~~~~~~-~~~i~~i~~~-~~~ 205 (349)
.+.+.+.+.++.+.+.|+|+|++.+....+- -+|.++. .+.+-.+... ++.++.+|+. .++
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGvPfSDPv------------ADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~ 95 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGVPFSDPV------------ADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKV 95 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecCCCCCcC------------ccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCC
Confidence 4677889999999999999999877432110 0111110 0000123334 7889999966 689
Q ss_pred cEEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCC---------C------------C----
Q 018919 206 PILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------R------------Q---- 238 (349)
Q Consensus 206 pv~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg---------~------------~---- 238 (349)
|+++-+..++ +..+.|.++|+|++.+-- ||= + +
T Consensus 96 Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY 175 (265)
T COG0159 96 PIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIY 175 (265)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 9998776554 347889999999999841 111 0 0
Q ss_pred ---C--CCc---h---hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 239 ---L--DYV---P---ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 239 ---~--~~~---~---~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
. -+| + ...+.+..+++.. ++||+..-||++++++.+..+. ||+|.+||+++..+..
T Consensus 176 ~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~~i~~ 242 (265)
T COG0159 176 YVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVKIIEE 242 (265)
T ss_pred EEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHHHHHh
Confidence 0 011 1 1234455555544 8999999999999999999999 9999999999986654
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.5e-08 Score=85.80 Aligned_cols=155 Identities=19% Similarity=0.199 Sum_probs=104.4
Q ss_pred eecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcc-----c--------cc-CCCCCCchHHH
Q 018919 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL-----K--------NF-QGLDLGKMDED 195 (349)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~-----~--------~~-~~~~~~~~~~~ 195 (349)
....+.+...+.++.+.+.|++.++++.+.|..-...+.++..+..+-.++. . .. .....|.+-..
T Consensus 16 ~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~~~ 95 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNTDPE 95 (206)
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCCCHH
Confidence 3345677777888888888888888888777533334555555532100000 0 00 01234444233
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 018919 196 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 275 (349)
+.+.+...+.+++. ++.|++++..+.++|+|.|.+... .....+.+.++++.++.++|+++.||| +.+++.
T Consensus 96 v~~~~~~~~~~~~~-G~~t~~E~~~A~~~Gad~vk~Fpa-------~~~G~~~l~~l~~~~~~~ipvvaiGGI-~~~n~~ 166 (206)
T PRK09140 96 VIRRAVALGMVVMP-GVATPTEAFAALRAGAQALKLFPA-------SQLGPAGIKALRAVLPPDVPVFAVGGV-TPENLA 166 (206)
T ss_pred HHHHHHHCCCcEEc-ccCCHHHHHHHHHcCCCEEEECCC-------CCCCHHHHHHHHhhcCCCCeEEEECCC-CHHHHH
Confidence 44444456888876 489999999999999999998432 112255666666665336999999999 789999
Q ss_pred HHHHhCCCEEEEchHHHH
Q 018919 276 KALALGASGIFIGRPVVY 293 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l~ 293 (349)
+.+++||++|.+++.++.
T Consensus 167 ~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 167 PYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHHHCCCeEEEEehHhcc
Confidence 999999999999999874
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-07 Score=88.73 Aligned_cols=142 Identities=17% Similarity=0.134 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc--cCC-CCCC-ch-HHHHHHHHHhcCC-cEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--FQG-LDLG-KM-DEDVKWLQTITKL-PILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~--~~~-~~~~-~~-~~~i~~i~~~~~~-pv~vK~v 212 (349)
.+.+++++++|+|+|+||... |+ +-+.|..|. ..-+. ..| +-++ .| .+.|+.+|+.++- +|.+|..
T Consensus 162 ~~AA~rA~~AGfDGVEIh~ah---Gy----Ll~qFLSp~-~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis 233 (362)
T PRK10605 162 RQAIANAREAGFDLVELHSAH---GY----LLHQFLSPS-SNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRIS 233 (362)
T ss_pred HHHHHHHHHcCCCEEEEcccc---cc----hHHHhcCCc-CCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 345677788999999998653 21 223343331 11111 111 1122 34 6889999998842 4777763
Q ss_pred -----------cCHHH-----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 018919 213 -----------LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 276 (349)
Q Consensus 213 -----------~~~~~-----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k 276 (349)
.+.++ ++.+.+.|+|.|.|+..... ...+-......++++.+ ++||++.|++ +++.+.+
T Consensus 234 ~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~--~~~~~~~~~~~~ik~~~--~~pv~~~G~~-~~~~ae~ 308 (362)
T PRK10605 234 PLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWA--GGEPYSDAFREKVRARF--HGVIIGAGAY-TAEKAET 308 (362)
T ss_pred CccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecccccc--CCccccHHHHHHHHHHC--CCCEEEeCCC-CHHHHHH
Confidence 23333 56777889999999852110 01111223345566666 6899999996 8999999
Q ss_pred HHHhC-CCEEEEchHHHH
Q 018919 277 ALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 277 al~~G-A~~V~ig~~~l~ 293 (349)
+|+.| ||+|.+||+++.
T Consensus 309 ~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 309 LIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred HHHcCCCCEEEECHHhhh
Confidence 99988 999999999985
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-07 Score=83.46 Aligned_cols=194 Identities=19% Similarity=0.196 Sum_probs=114.9
Q ss_pred eEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCC---C--CCCHHHHHhhCCCceEEEEeec----CC
Q 018919 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW---S--TSSVEEVASTGPGIRFFQLYVY----KD 134 (349)
Q Consensus 64 ~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~---~--~~~~e~i~~~~~~~~~~Ql~~~----~~ 134 (349)
++.|++|++.+++..=-+ .++ ..+.++....|+-.+.-.. . ....+.+.+..+. .-+.+.++ .+
T Consensus 2 ~i~~~~~~SRl~~Gtgky---~s~---~~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~-~~~~~lpNTaG~~t 74 (248)
T cd04728 2 TIGGKTFSSRLLLGTGKY---PSP---AIMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDK-SGYTLLPNTAGCRT 74 (248)
T ss_pred eECCEEeecceEEecCCC---CCH---HHHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhccc-cCCEECCCCCCCCC
Confidence 578999999999876222 122 3567777778877543111 1 1112223222220 01222222 33
Q ss_pred hhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEEEE
Q 018919 135 RNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILVKG 211 (349)
Q Consensus 135 ~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~ 211 (349)
.+.-...++.+++. |-++|-+-+=.. +. ..-|+..+.++..+... +.-++-=.
T Consensus 75 a~eAv~~a~lare~~~~~~iKlEVi~d---------------~~---------~Llpd~~~tv~aa~~L~~~Gf~vlpyc 130 (248)
T cd04728 75 AEEAVRTARLAREALGTDWIKLEVIGD---------------DK---------TLLPDPIETLKAAEILVKEGFTVLPYC 130 (248)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEecC---------------cc---------ccccCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34444455555565 667764443110 00 01122234455544432 43333223
Q ss_pred ecCHHHHHHHHHcCCCEEEE--ecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 212 VLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v--~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
..++..++++.++|++.|-. +--|. ..|..+.+.+..+++.. ++|||++|||.+++|+.+++++|||+|++|+
T Consensus 131 ~dd~~~ar~l~~~G~~~vmPlg~pIGs---g~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 131 TDDPVLAKRLEDAGCAAVMPLGSPIGS---GQGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCCC---CCCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 47899999999999999954 11121 12455577777777764 7999999999999999999999999999999
Q ss_pred HHHH
Q 018919 290 PVVY 293 (349)
Q Consensus 290 ~~l~ 293 (349)
++..
T Consensus 206 AIt~ 209 (248)
T cd04728 206 AIAK 209 (248)
T ss_pred HhcC
Confidence 9874
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-07 Score=86.78 Aligned_cols=147 Identities=20% Similarity=0.226 Sum_probs=97.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCC--CcCccccc-----CCCCCCch-HHHHHHHHHhcC
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP--PFLTLKNF-----QGLDLGKM-DEDVKWLQTITK 204 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p--~~~~~~~~-----~~~~~~~~-~~~i~~i~~~~~ 204 (349)
.+.+.+.+.++.++++|++.+++++ |.+ .| ++....+. ..-.+.+. .+.++++|+..+
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--Pfs------------dPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~ 76 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFS------------DPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNT 76 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCC------------CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCC
Confidence 3557788999999999999999876 321 11 00000000 00012234 678999998888
Q ss_pred CcEEEEEecC-------HHHHHHHHHcCCCEEEEec---------------CCC---------C-----------CC---
Q 018919 205 LPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGA---------R-----------QL--- 239 (349)
Q Consensus 205 ~pv~vK~v~~-------~~~a~~a~~~G~d~I~v~~---------------~gg---------~-----------~~--- 239 (349)
+|+++-...+ .+.++.+.++|+|++++.- +|- + ..
T Consensus 77 ~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~v 156 (242)
T cd04724 77 IPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFI 156 (242)
T ss_pred CCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCE
Confidence 9977644434 3457889999999999820 111 0 00
Q ss_pred --------CCc-----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 240 --------DYV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 240 --------~~~-----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.++ +...+.+.++++.. ++||+++|||++.+++.++... ||+|.+|++++.-+.
T Consensus 157 y~~s~~g~tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~~ 223 (242)
T cd04724 157 YYVSRTGVTGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKIIE 223 (242)
T ss_pred EEEeCCCCCCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHHH
Confidence 011 12345566666543 7999999999999999999999 999999999987554
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-07 Score=84.03 Aligned_cols=195 Identities=17% Similarity=0.204 Sum_probs=115.6
Q ss_pred eeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCC---C-CCCHHHHHhhCCCceEEEEee----cCC
Q 018919 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW---S-TSSVEEVASTGPGIRFFQLYV----YKD 134 (349)
Q Consensus 63 ~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~---~-~~~~e~i~~~~~~~~~~Ql~~----~~~ 134 (349)
..|.|++|++.+++..=-+ .+ ...+.++....|+-.+.-.. . ...-+.+.+..+. .-+.+.+ ..+
T Consensus 2 l~i~~~~~~SRl~~Gtgky---~s---~~~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i~~-~~~~~lpNTaG~~t 74 (250)
T PRK00208 2 LTIAGKTFSSRLLLGTGKY---PS---PQVMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLLPP-LGVTLLPNTAGCRT 74 (250)
T ss_pred cEECCEEeeccceEecCCC---CC---HHHHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhccc-cCCEECCCCCCCCC
Confidence 4678999999999876222 12 23577777888877553111 1 1111233332220 0112222 234
Q ss_pred hhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEEEE
Q 018919 135 RNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILVKG 211 (349)
Q Consensus 135 ~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~ 211 (349)
.+.-...++.+++. |-++|-+-+=.- ..+. -++..+.++..+... +.-++-=.
T Consensus 75 a~eAv~~a~lare~~~~~~iKlEVi~d----------~~~l--------------lpd~~~tv~aa~~L~~~Gf~vlpyc 130 (250)
T PRK00208 75 AEEAVRTARLAREALGTNWIKLEVIGD----------DKTL--------------LPDPIETLKAAEILVKEGFVVLPYC 130 (250)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEecC----------CCCC--------------CcCHHHHHHHHHHHHHCCCEEEEEe
Confidence 44444555556665 667764433110 0011 122234455555443 33333123
Q ss_pred ecCHHHHHHHHHcCCCEEEE--ecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 212 VLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v--~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
..++..++++.++|++.|-. +--|. . .|..+.+.+..+++.. ++|||++|||.+++|+.+++++|||+|++++
T Consensus 131 ~~d~~~ak~l~~~G~~~vmPlg~pIGs-g--~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 131 TDDPVLAKRLEEAGCAAVMPLGAPIGS-G--LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCCC-C--CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 47899999999999999954 11121 1 2444566677777764 7999999999999999999999999999999
Q ss_pred HHHH
Q 018919 290 PVVY 293 (349)
Q Consensus 290 ~~l~ 293 (349)
++..
T Consensus 206 AItk 209 (250)
T PRK00208 206 AIAV 209 (250)
T ss_pred HhhC
Confidence 9874
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-08 Score=91.68 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~-GA~~V~ig~~~l~ 293 (349)
.+.++.+.+.|+|.|.+++...... .....++.+.++.+.+ ++||+++|||++.+|+.+++.. |||+|++||+++.
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~-~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGT-KKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCC-CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 4667889999999999965321111 1123678888888776 7999999999999999999997 9999999999986
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-08 Score=91.21 Aligned_cols=76 Identities=25% Similarity=0.286 Sum_probs=63.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH---hCCCEEEEchHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA---LGASGIFIGRPV 291 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~---~GA~~V~ig~~~ 291 (349)
.+.++.+.+.|++.+++.+...-+...|+ .++.+.++++.+ ++|||++|||++.+|+.+++. .||++|++||++
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 36688899999999999654322333454 899999998876 799999999999999998875 499999999999
Q ss_pred HH
Q 018919 292 VY 293 (349)
Q Consensus 292 l~ 293 (349)
+.
T Consensus 226 ~~ 227 (241)
T PRK14024 226 YA 227 (241)
T ss_pred Hc
Confidence 86
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-07 Score=87.34 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 244 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 244 ~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
+.++.+.++++.. ++||+++|||++.+|+.+++..| |++|++|++++.
T Consensus 186 ~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 186 YDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 3466777777765 79999999999999999999988 999999999875
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-07 Score=84.24 Aligned_cols=149 Identities=22% Similarity=0.309 Sum_probs=97.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCC---Cc--hh---HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHH-Hh
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRL---GR--RE---ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQ-TI 202 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~---g~--r~---~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~-~~ 202 (349)
.|.+.+.+.++.+.+.|+|.++|.+....+ |. +. +-++++ .+.+. ++.++++| +.
T Consensus 21 P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G---------------~~~~~~~~~~~~ir~~~ 85 (259)
T PF00290_consen 21 PDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNG---------------FTLEKIFELVKEIRKKE 85 (259)
T ss_dssp SSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT-----------------HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCC---------------CCHHHHHHHHHHHhccC
Confidence 467888999999999999999988753211 10 00 111111 12233 68899999 66
Q ss_pred cCCcEEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCCC-----------------------
Q 018919 203 TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR----------------------- 237 (349)
Q Consensus 203 ~~~pv~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg~----------------------- 237 (349)
.++|+++-...++ +.++.|.++|+|++++-. +|-.
T Consensus 86 ~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~g 165 (259)
T PF00290_consen 86 PDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASG 165 (259)
T ss_dssp TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SS
T ss_pred CCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCc
Confidence 7999998776432 357889999999999842 1110
Q ss_pred --------CCCCc----hh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcC
Q 018919 238 --------QLDYV----PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 299 (349)
Q Consensus 238 --------~~~~~----~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G 299 (349)
...+. +. ..+.+..+++.. +.||++.-||++++|+.+.. .|||+|.|||+++..+...+
T Consensus 166 FiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~ 237 (259)
T PF00290_consen 166 FIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENG 237 (259)
T ss_dssp EEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTC
T ss_pred EEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHcc
Confidence 00111 11 234556665554 79999999999999997766 99999999999998765434
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-06 Score=80.99 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=93.9
Q ss_pred HHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-H
Q 018919 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-D 193 (349)
Q Consensus 115 e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~ 193 (349)
+++++....|..+..|.+.-.....+.++.+.++|++++.++- .|.. ..+. .
T Consensus 67 ~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~d-lp~e--------------------------~~~~~~ 119 (244)
T PRK13125 67 EEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPD-LLID--------------------------YPDDLE 119 (244)
T ss_pred HHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECC-CCCC--------------------------cHHHHH
Confidence 3444322234444555532122345678888999999998752 1110 0011 2
Q ss_pred HHHHHHHHhcCCcEEEEEe--cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 194 EDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v--~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
+.++.+++ .++..++-.- .+.+..+...+..-..+.++-.|++....-+...+.+.++++... +.||+++|||+++
T Consensus 120 ~~~~~~~~-~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~ 197 (244)
T PRK13125 120 KYVEIIKN-KGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSP 197 (244)
T ss_pred HHHHHHHH-cCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCH
Confidence 44556555 4776655332 235777888887666665654444321222233456677766552 5789999999999
Q ss_pred HHHHHHHHhCCCEEEEchHHHHHH
Q 018919 272 TDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
+++.+++..|||++.+||+++..+
T Consensus 198 e~i~~~~~~gaD~vvvGSai~~~~ 221 (244)
T PRK13125 198 EDARDALSAGADGVVVGTAFIEEL 221 (244)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHH
Confidence 999999999999999999988644
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-07 Score=85.18 Aligned_cols=127 Identities=22% Similarity=0.250 Sum_probs=93.2
Q ss_pred HHHHHHHH-cCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHH
Q 018919 140 QLVRRAER-AGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAE 216 (349)
Q Consensus 140 ~~~~~~~~-~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~ 216 (349)
+.++...+ .|++.+ .+++|.... ..+...+.|+++.+.+++||.+.+ +.+.|
T Consensus 35 ~~a~~~~~~~Ga~~l~ivDLd~a~~-------------------------~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e 89 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIGAKA-------------------------QHAREFDYIKSLRRLTTKDIEVGGGIRTKS 89 (234)
T ss_pred HHHHHHHhccCCCEEEEEECccccc-------------------------CCcchHHHHHHHHhhcCCeEEEcCCcCCHH
Confidence 46677777 689987 556654211 011226789999888899998876 68999
Q ss_pred HHHHHHHcCCCEEEEecC---------------CCC---------------CC---------------------------
Q 018919 217 DARIAVQAGAAGIIVSNH---------------GAR---------------QL--------------------------- 239 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~---------------gg~---------------~~--------------------------- 239 (349)
+++.+.++||+.+++... |.+ .+
T Consensus 90 ~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~td 169 (234)
T PRK13587 90 QIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTD 169 (234)
T ss_pred HHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEec
Confidence 999999999999988521 111 00
Q ss_pred ---CC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 240 ---DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 240 ---~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
++ .-+.++.+.++.+.. ++||++.|||++.+|+.+++.+|+++|.+|++++.
T Consensus 170 i~~dGt~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 170 IAKDGKMSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred ccCcCCCCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 00 112456667776654 79999999999999999999999999999999875
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-07 Score=88.76 Aligned_cols=221 Identities=23% Similarity=0.300 Sum_probs=128.5
Q ss_pred ceeEcCeecCcceeecccccccccCCh------hhHHHHHHHHHcCCeEEecCCCC--------------CCHHH-----
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPE------GEYATARAASAAGTIMTLSSWST--------------SSVEE----- 116 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~------~~~~la~aa~~~G~~~~~~~~~~--------------~~~e~----- 116 (349)
..+|.++++++-|+.|||+.. ..+++ ....+-+.-++.|+.+++++... .+.+.
T Consensus 5 P~~ig~~~lkNRiv~apm~~~-~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k 83 (341)
T PF00724_consen 5 PLKIGNLTLKNRIVMAPMTTN-MADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLK 83 (341)
T ss_dssp -EEETTEEESSSEEE----SS-TSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHH
T ss_pred CeeECCEEecCCeEECCCCCC-CcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHHHH
Confidence 467889999999999999643 22333 23455666677787777754311 01111
Q ss_pred -HHh---hCCCceEEEEee----------------cC-------------------Chh-------HHHHHHHHHHHcCC
Q 018919 117 -VAS---TGPGIRFFQLYV----------------YK-------------------DRN-------VVAQLVRRAERAGF 150 (349)
Q Consensus 117 -i~~---~~~~~~~~Ql~~----------------~~-------------------~~~-------~~~~~~~~~~~~G~ 150 (349)
+.+ ......++||+- +. +.+ ...+.+++++++|+
T Consensus 84 ~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~AGf 163 (341)
T PF00724_consen 84 KLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKEAGF 163 (341)
T ss_dssp HHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111 122445667632 00 011 12345567778999
Q ss_pred CEEEEecCCCCCCchhHHhhhhcCCCCcCcccc--cCC-CCCC-ch-HHHHHHHHHhc--CCcEEEEEecC---------
Q 018919 151 KAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--FQG-LDLG-KM-DEDVKWLQTIT--KLPILVKGVLT--------- 214 (349)
Q Consensus 151 ~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~--~~~-~~~~-~~-~~~i~~i~~~~--~~pv~vK~v~~--------- 214 (349)
|+|+||... |+- -++|..|. ...+. ..| +.++ .| .+.|+.+|+.+ +.||.+|....
T Consensus 164 DGVEIH~ah---GyL----l~qFLSp~-~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~ 235 (341)
T PF00724_consen 164 DGVEIHAAH---GYL----LSQFLSPL-TNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITL 235 (341)
T ss_dssp SEEEEEEST---TSH----HHHHHSTT-T---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHS
T ss_pred CeEeecccc---hhh----hhheeeec-cCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCch
Confidence 999999864 222 22333331 00110 111 1111 24 67899999987 57899998621
Q ss_pred HH---HHHHHHHcCCCEEEEecCCCC------C-CCC--ch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC
Q 018919 215 AE---DARIAVQAGAAGIIVSNHGAR------Q-LDY--VP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 215 ~~---~a~~a~~~G~d~I~v~~~gg~------~-~~~--~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G 281 (349)
.+ .++.+.++|+|.+.++..... . ... .+ ........+++.+ ++|||+.|||++++.+.++++.|
T Consensus 236 ~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g 313 (341)
T PF00724_consen 236 EETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEG 313 (341)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc--CceEEEEeeecchhhhHHHHhcC
Confidence 12 367788899999876532111 0 001 11 1234556666666 79999999999999999999977
Q ss_pred -CCEEEEchHHHH
Q 018919 282 -ASGIFIGRPVVY 293 (349)
Q Consensus 282 -A~~V~ig~~~l~ 293 (349)
||+|.+||+++.
T Consensus 314 ~~DlV~~gR~~la 326 (341)
T PF00724_consen 314 KADLVAMGRPLLA 326 (341)
T ss_dssp STSEEEESHHHHH
T ss_pred CceEeeccHHHHh
Confidence 999999999985
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-07 Score=82.94 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=98.3
Q ss_pred EeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcC-CCCc--Ccc-cc--------cC-CCCCCchHHH
Q 018919 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT-LPPF--LTL-KN--------FQ-GLDLGKMDED 195 (349)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~-~p~~--~~~-~~--------~~-~~~~~~~~~~ 195 (349)
++...+++...+.++.+.+.|++.+++++..+..-.-.+.++..+. ..-+ ... +. .. ....+.....
T Consensus 9 i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~ 88 (190)
T cd00452 9 VLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGLDPE 88 (190)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCCCHH
Confidence 3444566666777777777788888887765532122233333332 1000 000 00 00 0122323233
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 018919 196 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 275 (349)
+...++..+.|+++ ++.|++++..+.++|+|.|.+... .+...+.+..+.+.++ ++|+++.||| +.+++.
T Consensus 89 ~~~~~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~-~~p~~a~GGI-~~~n~~ 158 (190)
T cd00452 89 VVKAANRAGIPLLP-GVATPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPFP-QVRFMPTGGV-SLDNAA 158 (190)
T ss_pred HHHHHHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCC-CCeEEEeCCC-CHHHHH
Confidence 44445556888877 677999999999999999998532 1113455566555442 5999999999 999999
Q ss_pred HHHHhCCCEEEEchHHHH
Q 018919 276 KALALGASGIFIGRPVVY 293 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l~ 293 (349)
++++.||++|.+++.+..
T Consensus 159 ~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 159 EWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred HHHHCCCEEEEEchhcch
Confidence 999999999999998863
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=84.78 Aligned_cols=150 Identities=23% Similarity=0.337 Sum_probs=108.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEE-EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIA-LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~-i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK 210 (349)
++.....+++++-.+.|+|-++ +++..... ..+. .+.+++..+...+|+.+.
T Consensus 27 rd~GDpVelA~~Y~e~GADElvFlDItAs~~--------------------------gr~~~~~vv~r~A~~vfiPltVG 80 (256)
T COG0107 27 RDAGDPVELAKRYNEEGADELVFLDITASSE--------------------------GRETMLDVVERVAEQVFIPLTVG 80 (256)
T ss_pred hhcCChHHHHHHHHHcCCCeEEEEecccccc--------------------------cchhHHHHHHHHHhhceeeeEec
Confidence 4556677899999999999874 34433211 1222 677888888889999887
Q ss_pred E-ecCHHHHHHHHHcCCCEEEEe------------------------------------------cCCCCC---C-----
Q 018919 211 G-VLTAEDARIAVQAGAAGIIVS------------------------------------------NHGARQ---L----- 239 (349)
Q Consensus 211 ~-v~~~~~a~~a~~~G~d~I~v~------------------------------------------~~gg~~---~----- 239 (349)
+ +.+.+++++++.+|||-|.+- .||||. +
T Consensus 81 GGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~W 160 (256)
T COG0107 81 GGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEW 160 (256)
T ss_pred CCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHH
Confidence 6 689999999999999988763 023321 0
Q ss_pred -------------------CCc--hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHHHHhh
Q 018919 240 -------------------DYV--PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYSLAA 297 (349)
Q Consensus 240 -------------------~~~--~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~~~~~ 297 (349)
|+. --.++.+..+++.+ ++|||++||..+.+|..+++..| ||++..++-|.|+
T Consensus 161 a~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~--- 235 (256)
T COG0107 161 AKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAV--NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFG--- 235 (256)
T ss_pred HHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcC---
Confidence 011 11456777777777 89999999999999999999987 9999988888763
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCC
Q 018919 298 EGEKGVRRVLEMLREEFELAMALSGC 323 (349)
Q Consensus 298 ~G~~gv~~~l~~l~~el~~~m~~~G~ 323 (349)
+ .-..|++..|...|.
T Consensus 236 --~--------~~i~evK~yL~~~gi 251 (256)
T COG0107 236 --E--------ITIGEVKEYLAEQGI 251 (256)
T ss_pred --c--------ccHHHHHHHHHHcCC
Confidence 2 223566666666664
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.2e-08 Score=88.47 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
.+.++.+.+.|++.|.+.....-+...| +.++.+.++.+.+ ++|||++|||++.+|+.+++..| |++|++||++++
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 4667888899999888763221112234 5788999998876 69999999999999999999988 999999999986
Q ss_pred H
Q 018919 294 S 294 (349)
Q Consensus 294 ~ 294 (349)
+
T Consensus 226 ~ 226 (233)
T PRK00748 226 G 226 (233)
T ss_pred C
Confidence 3
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.1e-08 Score=90.16 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH-HhCCCEEEEchHHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVYS 294 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal-~~GA~~V~ig~~~l~~ 294 (349)
+.++.+.+.|++.+++.+-..-+...| +.++.+.++.+.+ ++|||++|||++.+|+.+++ ..|+++|.+|++|.|.
T Consensus 156 e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 156 ELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred HHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 667889999999999964322122344 4789999998876 79999999999999999999 6999999999999983
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-07 Score=85.05 Aligned_cols=75 Identities=25% Similarity=0.320 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.++.+.+.|++.+++.+....+...+ +.++.+.++++.+ ++||++.|||++.+|+.+++..||++|++||+++.
T Consensus 150 ~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~ 224 (234)
T cd04732 150 ELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYE 224 (234)
T ss_pred HHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 567889999999999864322122233 5688899998876 79999999999999999999999999999999986
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=90.87 Aligned_cols=203 Identities=19% Similarity=0.211 Sum_probs=139.9
Q ss_pred eecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCC--CCHHHHHhh---------------------CC--
Q 018919 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SSVEEVAST---------------------GP-- 122 (349)
Q Consensus 68 ~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~--~~~e~i~~~---------------------~~-- 122 (349)
..+.+-+++|||-- -|+.++.-.|-++|..++.+..-. ..++-+... .|
T Consensus 7 l~y~nk~iLApMvr------~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e 80 (477)
T KOG2334|consen 7 LFYRNKLILAPMVR------AGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAE 80 (477)
T ss_pred hhhcCcEeeehHHH------hccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhh
Confidence 34567889999942 257789999999999988764321 111111110 11
Q ss_pred -CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHH
Q 018919 123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQ 200 (349)
Q Consensus 123 -~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~ 200 (349)
....||+-. .+++.-.+.++.+. ....++.+|++||- .|++-.+++.+. +.+++. ...|..+.
T Consensus 81 ~~rlilQ~gT-~sa~lA~e~A~lv~-nDvsgidiN~gCpK----------~fSi~~gmgaal---Lt~~dkl~~IL~sLv 145 (477)
T KOG2334|consen 81 NSRLILQIGT-ASAELALEAAKLVD-NDVSGIDINMGCPK----------EFSIHGGMGAAL---LTDPDKLVAILYSLV 145 (477)
T ss_pred cCeEEEEecC-CcHHHHHHHHHHhh-cccccccccCCCCC----------ccccccCCCchh---hcCHHHHHHHHHHHH
Confidence 235677643 45665555554443 34667889999984 244333443333 356766 77899999
Q ss_pred HhcCCcEEEEEec------CHHHHHHHHHcCCCEEEEecCCCCC--CCCchhhHHHHHHHHHHhcCCCcEEEecCCCC--
Q 018919 201 TITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRR-- 270 (349)
Q Consensus 201 ~~~~~pv~vK~v~------~~~~a~~a~~~G~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~-- 270 (349)
+...+|+.+|+.. +.+..++..+.|+.+|.|+ +.+. -..-+++.+.+.+++..+. .+|||+.||+++
T Consensus 146 k~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh--~rt~d~r~~~~~~~~~i~~i~~~~~-~V~vi~ng~~~~~e 222 (477)
T KOG2334|consen 146 KGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVH--CRTRDERNQEPATKDYIREIAQACQ-MVPVIVNGGSMDIE 222 (477)
T ss_pred hcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEE--eeccccCCCCCCCHHHHHHHHHHhc-cceEeeccchhhHH
Confidence 9999999999872 3456788889999999994 4321 1234667888999998883 399999999999
Q ss_pred -HHHHHHHHH-hCCCEEEEchHHHHH
Q 018919 271 -GTDVFKALA-LGASGIFIGRPVVYS 294 (349)
Q Consensus 271 -~~dv~kal~-~GA~~V~ig~~~l~~ 294 (349)
..|+.+.-. .|++.||+.|+..+.
T Consensus 223 ~y~Di~~~~~~~~~~~vmiAR~A~~n 248 (477)
T KOG2334|consen 223 QYSDIEDFQEKTGADSVMIARAAESN 248 (477)
T ss_pred hhhhHHHHHHHhccchhhhhHhhhcC
Confidence 889988776 799999999966543
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-06 Score=76.88 Aligned_cols=196 Identities=15% Similarity=0.149 Sum_probs=107.0
Q ss_pred eEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC------CHHHHHhhCC--CceE-EEEeecCC
Q 018919 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------SVEEVASTGP--GIRF-FQLYVYKD 134 (349)
Q Consensus 64 ~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~------~~e~i~~~~~--~~~~-~Ql~~~~~ 134 (349)
+|.|++|.+.+++..=-+. + ...+.++....|.-.+.-..... .-+.+.+..+ +..+ .+--+..+
T Consensus 1 ki~g~~f~SRL~lGTgky~---s---~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNTaGc~t 74 (247)
T PF05690_consen 1 KIGGKEFRSRLILGTGKYP---S---PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNTAGCRT 74 (247)
T ss_dssp -ETTEEES-SEEEE-STSS---S---HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE-TT-SS
T ss_pred CcCCEEeecceEEecCCCC---C---HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcCCCCCC
Confidence 4778999999998762221 2 23577788888887654222111 1233333333 2111 12222344
Q ss_pred hhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEEEE
Q 018919 135 RNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILVKG 211 (349)
Q Consensus 135 ~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~ 211 (349)
.+.-...++.++++ |-++|-+.+=.. +. ..-|+.++.++..+... +.-|+-=.
T Consensus 75 A~EAv~~A~laRe~~~t~wIKLEVi~D---------------~~---------~L~PD~~etl~Aae~Lv~eGF~VlPY~ 130 (247)
T PF05690_consen 75 AEEAVRTARLAREAFGTNWIKLEVIGD---------------DK---------TLLPDPIETLKAAEILVKEGFVVLPYC 130 (247)
T ss_dssp HHHHHHHHHHHHHTTS-SEEEE--BS----------------TT---------T--B-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCC---------------CC---------CcCCChhHHHHHHHHHHHCCCEEeecC
Confidence 45555566666676 777775544211 00 01233344444433333 44444333
Q ss_pred ecCHHHHHHHHHcCCCEEEEecCC-CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
..++-.++++.++||..|.--+.. |+ .-|..+...|..+.+.. ++|||.|+||.+++|+.+++++|||+|.+-++
T Consensus 131 ~~D~v~akrL~d~GcaavMPlgsPIGS--g~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 131 TDDPVLAKRLEDAGCAAVMPLGSPIGS--GRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp -S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred CCCHHHHHHHHHCCCCEEEeccccccc--CcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 467889999999999999764321 11 12444567788888877 89999999999999999999999999999998
Q ss_pred HHH
Q 018919 291 VVY 293 (349)
Q Consensus 291 ~l~ 293 (349)
+..
T Consensus 207 iA~ 209 (247)
T PF05690_consen 207 IAK 209 (247)
T ss_dssp HHT
T ss_pred Hhc
Confidence 853
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.6e-08 Score=87.45 Aligned_cols=77 Identities=26% Similarity=0.354 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
.+.++.+.+.|++.+++..-..-+...+ ..++.+.++.+.+ ++||++.|||++.+|+.+++..||++|++||+++.+
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLSG-PNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 3568889999999988753221111223 4688888888876 799999999999999999999999999999999863
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-07 Score=86.21 Aligned_cols=129 Identities=21% Similarity=0.326 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHH
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAE 216 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~ 216 (349)
..+.++..++.|+++|-+..+....+ .-++++..+++.+++|+..|.. .++.
T Consensus 70 ~~~~a~~y~~~GA~aiSVlTe~~~F~---------------------------Gs~~dL~~v~~~~~~PvL~KDFIid~~ 122 (254)
T PF00218_consen 70 PAEIAKAYEEAGAAAISVLTEPKFFG---------------------------GSLEDLRAVRKAVDLPVLRKDFIIDPY 122 (254)
T ss_dssp HHHHHHHHHHTT-SEEEEE--SCCCH---------------------------HHHHHHHHHHHHSSS-EEEES---SHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCC---------------------------CCHHHHHHHHHHhCCCcccccCCCCHH
Confidence 35677788899999998765532110 0157899999989999999984 7888
Q ss_pred HHHHHHHcCCCEEEEecC--C--------------C----------------------------CCCCCchhhHHHHHHH
Q 018919 217 DARIAVQAGAAGIIVSNH--G--------------A----------------------------RQLDYVPATIMALEEV 252 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~--g--------------g----------------------------~~~~~~~~~~~~l~~i 252 (349)
++..+..+|||+|.+.-. + | |.+.+-...+....++
T Consensus 123 QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l 202 (254)
T PF00218_consen 123 QIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEEL 202 (254)
T ss_dssp HHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHH
T ss_pred HHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHH
Confidence 999999999999887521 0 0 1122222233445556
Q ss_pred HHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 253 VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 253 ~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
...++.++.+|+.+||.+.+|+.++...|+|+|.||++++.
T Consensus 203 ~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~ 243 (254)
T PF00218_consen 203 APLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMR 243 (254)
T ss_dssp HCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHT
T ss_pred HhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 66666679999999999999999999999999999999986
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.4e-07 Score=81.71 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=86.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v----- 212 (349)
...++.+.+.|++-+.+-+|... +. . .+.+. .+.++.+++.. .|+.+|.+
T Consensus 77 ~~e~~~Ai~~GA~EiD~Vin~~~--------------~~-----~----g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~ 132 (221)
T PRK00507 77 AFEAKDAIANGADEIDMVINIGA--------------LK-----S----GDWDAVEADIRAVVEAA-GGAVLKVIIETCL 132 (221)
T ss_pred HHHHHHHHHcCCceEeeeccHHH--------------hc-----C----CCHHHHHHHHHHHHHhc-CCceEEEEeecCc
Confidence 35667777889999876655321 00 0 01222 45688887754 47888986
Q ss_pred cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 ~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
++.++ ++.+.++|+|+|..+.. - ..+..+.+.+..+++.++++++|.++|||++.+|+.+++.+||+.++..
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG-~---~~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTG-F---STGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCC-C---CCCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccC
Confidence 33333 46688999998877543 1 2234567778778888877899999999999999999999999998765
Q ss_pred h
Q 018919 289 R 289 (349)
Q Consensus 289 ~ 289 (349)
+
T Consensus 209 ~ 209 (221)
T PRK00507 209 A 209 (221)
T ss_pred c
Confidence 4
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.6e-07 Score=81.63 Aligned_cols=128 Identities=26% Similarity=0.287 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~ 217 (349)
.++++..++.|+.+|-+..+....+ ..+++++.+++.+++||+.|.. .++.+
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~---------------------------Gs~~~l~~v~~~v~~PvL~KDFIid~~Q 116 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFG---------------------------GSLEDLKSVSSELKIPVLRKDFILDEIQ 116 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCC---------------------------CCHHHHHHHHHhcCCCEEeccccCCHHH
Confidence 4677788999999987655532110 0157888888888999999984 68888
Q ss_pred HHHHHHcCCCEEEEecC--CC------------------------------------------CCCCCchhhHHHHHHHH
Q 018919 218 ARIAVQAGAAGIIVSNH--GA------------------------------------------RQLDYVPATIMALEEVV 253 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~--gg------------------------------------------~~~~~~~~~~~~l~~i~ 253 (349)
...+..+|||+|.+.-. +. |.+.+-........++.
T Consensus 117 I~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~ 196 (247)
T PRK13957 117 IREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVA 196 (247)
T ss_pred HHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHH
Confidence 88888899999887521 00 01111112334555666
Q ss_pred HHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 254 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 254 ~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
..++.+..+|+.|||.+++|+.++... ||+|.||+.++.+
T Consensus 197 ~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 197 AFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred hhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 677667889999999999999887766 9999999999863
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=79.26 Aligned_cols=155 Identities=15% Similarity=0.177 Sum_probs=108.4
Q ss_pred EEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcC--CCCcCcc-----cc---c-----CC---CC
Q 018919 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT--LPPFLTL-----KN---F-----QG---LD 188 (349)
Q Consensus 127 ~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~--~p~~~~~-----~~---~-----~~---~~ 188 (349)
+-++...+.+...+.++.+.+.|.+.++||+++|..-...+.++..+. .|. +.. .+ . .| ..
T Consensus 18 i~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~-~~vGaGTVl~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPG-MILGVGSIVDAATAALYIQLGANFIV 96 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCC-eEEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 334445688888899999999999999999999865444455543321 121 100 00 0 01 45
Q ss_pred CCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecC
Q 018919 189 LGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 267 (349)
Q Consensus 189 ~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 267 (349)
.|.+ -+.++..++ .++|++- ++.|+.++..|.++|++.|.++-.+ ..|+ ..++.+..-+ .+++++.+||
T Consensus 97 sP~~~~~v~~~~~~-~~i~~iP-G~~TpsEi~~A~~~Ga~~vKlFPA~----~~G~---~~ikal~~p~-p~i~~~ptGG 166 (222)
T PRK07114 97 TPLFNPDIAKVCNR-RKVPYSP-GCGSLSEIGYAEELGCEIVKLFPGS----VYGP---GFVKAIKGPM-PWTKIMPTGG 166 (222)
T ss_pred CCCCCHHHHHHHHH-cCCCEeC-CCCCHHHHHHHHHCCCCEEEECccc----ccCH---HHHHHHhccC-CCCeEEeCCC
Confidence 6666 455666654 6898874 7899999999999999999996422 1233 3344444434 3799999999
Q ss_pred CCC-HHHHHHHHHhCCCEEEEchHHH
Q 018919 268 VRR-GTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 268 I~~-~~dv~kal~~GA~~V~ig~~~l 292 (349)
|.- .+++..++++||.+|.+|+.++
T Consensus 167 V~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 167 VEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred CCcchhcHHHHHhCCCEEEEEChhhc
Confidence 995 5899999999999999999775
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.4e-07 Score=82.94 Aligned_cols=75 Identities=28% Similarity=0.251 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH-HHHhCCCEEEEchHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK-ALALGASGIFIGRPVV 292 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k-al~~GA~~V~ig~~~l 292 (349)
.+.++.+.++|+|.|++++....+...| +.++.+.++++.+ ++||+++|||++.+|+.+ +...||++|++|++|-
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 4678999999999999976322111223 3688888888876 799999999999999999 5558999999999985
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.5e-07 Score=82.82 Aligned_cols=128 Identities=25% Similarity=0.398 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHH
Q 018919 139 AQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~ 216 (349)
.+.++...+.|++.+ .+++|....+ .+..++.|+++.+.+++|+.+.+ +.+.+
T Consensus 32 ~~~a~~~~~~g~~~l~ivDLdaa~~g-------------------------~~~n~~~i~~i~~~~~~~i~vgGGIrs~e 86 (229)
T PF00977_consen 32 VEVAKAFNEQGADELHIVDLDAAKEG-------------------------RGSNLELIKEIAKETGIPIQVGGGIRSIE 86 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEEHHHHCCT-------------------------HHHHHHHHHHHHHHSSSEEEEESSE-SHH
T ss_pred HHHHHHHHHcCCCEEEEEEccCcccC-------------------------chhHHHHHHHHHhcCCccEEEeCccCcHH
Confidence 456777788899997 5566532100 01126789999999999998876 68999
Q ss_pred HHHHHHHcCCCEEEEec----------------------------CC-------CCC-----------------------
Q 018919 217 DARIAVQAGAAGIIVSN----------------------------HG-------ARQ----------------------- 238 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~----------------------------~g-------g~~----------------------- 238 (349)
+++.+.++|++.|+++. +| ...
T Consensus 87 d~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~ 166 (229)
T PF00977_consen 87 DAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIIL 166 (229)
T ss_dssp HHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999861 11 000
Q ss_pred ----CCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 239 ----LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 239 ----~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.++ .-+.++.+.++++.. ++|+|++|||++.+|+.++...|+++|.+|++|+.
T Consensus 167 tdi~~dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 167 TDIDRDGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp EETTTTTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred eeccccCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence 011 124567788888877 89999999999999999999999999999999975
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.5e-07 Score=82.00 Aligned_cols=128 Identities=29% Similarity=0.411 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHH
Q 018919 139 AQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~ 216 (349)
.+.++...+.|++.+ .+++|... + .+...+.++++.+.+.+|+.+.+ +.+.|
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~~-~-------------------------~~~n~~~i~~i~~~~~~~v~vgGGir~~e 91 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAIM-G-------------------------RGDNDEAIRELAAAWPLGLWVDGGIRSLE 91 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCcccc-C-------------------------CCccHHHHHHHHHhCCCCEEEecCcCCHH
Confidence 457778888899987 45555310 0 11115778899888889998776 57899
Q ss_pred HHHHHHHcCCCEEEEecC--------------CC-CC---CC--Cc----------------------------------
Q 018919 217 DARIAVQAGAAGIIVSNH--------------GA-RQ---LD--YV---------------------------------- 242 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~--------------gg-~~---~~--~~---------------------------------- 242 (349)
+++.+.++||+.+++... |. +- +| .+
T Consensus 92 dv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~di~~~G 171 (233)
T cd04723 92 NAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVLDIDRVG 171 (233)
T ss_pred HHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEEEEcCccc
Confidence 999999999999987531 21 10 00 00
Q ss_pred ---hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 243 ---PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
.+.++.+.++.+.. .+||++.|||++.+|+.+++.+||++|.+|++++.+
T Consensus 172 ~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 172 SGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred cCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 12234555555544 799999999999999999999999999999999863
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.3e-07 Score=84.14 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~-GA~~V~ig~~~l~ 293 (349)
.+.++.+.+.|++.+++++........|+ .++.+.++.+.. ++|||++|||++.+|+.+++.. ||++|++|+++.+
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNGY-DLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCCc-CHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 36678899999999999764321111232 688888888876 7999999999999999999985 9999999999986
Q ss_pred H
Q 018919 294 S 294 (349)
Q Consensus 294 ~ 294 (349)
+
T Consensus 233 ~ 233 (253)
T PRK02083 233 G 233 (253)
T ss_pred C
Confidence 3
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.9e-07 Score=80.18 Aligned_cols=129 Identities=26% Similarity=0.398 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCH
Q 018919 138 VAQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTA 215 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~ 215 (349)
..+.++...+.|++.+ .+++|....| .+...+.++++.+.+++||-+.+ +.+.
T Consensus 33 P~~~a~~~~~~Ga~~lHlVDLdgA~~g-------------------------~~~n~~~i~~i~~~~~~~vQvGGGIRs~ 87 (241)
T COG0106 33 PLEVAKKWSDQGAEWLHLVDLDGAKAG-------------------------GPRNLEAIKEILEATDVPVQVGGGIRSL 87 (241)
T ss_pred HHHHHHHHHHcCCcEEEEeeccccccC-------------------------CcccHHHHHHHHHhCCCCEEeeCCcCCH
Confidence 4567778888999998 5667654211 11115779999999999997776 6889
Q ss_pred HHHHHHHHcCCCEEEEec---------------CCCC-----------------C-------------------------
Q 018919 216 EDARIAVQAGAAGIIVSN---------------HGAR-----------------Q------------------------- 238 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~---------------~gg~-----------------~------------------------- 238 (349)
++++.++++|++.+++.. +|++ +
T Consensus 88 ~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~T 167 (241)
T COG0106 88 EDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYT 167 (241)
T ss_pred HHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEE
Confidence 999999999999998862 1221 0
Q ss_pred ---CCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEchHHHH
Q 018919 239 ---LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 293 (349)
Q Consensus 239 ---~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~-GA~~V~ig~~~l~ 293 (349)
.|+ .-+.++.+.++++++ ++||+++|||+|-+|+..+-.+ |..+|.+|++++.
T Consensus 168 dI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~ 226 (241)
T COG0106 168 DISRDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYE 226 (241)
T ss_pred ecccccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhc
Confidence 011 134677888888887 8999999999999999888888 9999999999985
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-06 Score=77.32 Aligned_cols=134 Identities=25% Similarity=0.258 Sum_probs=86.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEe-cCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcE--E
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALT-VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPI--L 208 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~-~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv--~ 208 (349)
.|+..+.+.++.+.+.|++.|.+. .|++.. | +..+ .+.++++++..+.|+ .
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~-------------~------------~~~~~~~~v~~i~~~~~~~v~v~ 62 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFV-------------P------------NLTFGPPVLEALRKYTDLPIDVH 62 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-------------C------------CcccCHHHHHHHHhcCCCcEEEE
Confidence 467778899999999999999886 344321 1 1112 566777776556664 2
Q ss_pred EEEecCHHHHHHHHHcCCCEEEEecC---------------CCC--------C-----------CC-----------Cc-
Q 018919 209 VKGVLTAEDARIAVQAGAAGIIVSNH---------------GAR--------Q-----------LD-----------YV- 242 (349)
Q Consensus 209 vK~v~~~~~a~~a~~~G~d~I~v~~~---------------gg~--------~-----------~~-----------~~- 242 (349)
++.....+.++.+.++|+|+|++... |-. . .+ ++
T Consensus 63 lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~ 142 (210)
T TIGR01163 63 LMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQ 142 (210)
T ss_pred eeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcc
Confidence 44333445567777788888777421 000 0 00 11
Q ss_pred ---hhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 243 ---PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+..++.+.++++.++ .++|++++|||+ .+++.++++.|||.+.+||+++
T Consensus 143 ~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 143 KFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHh
Confidence 223344555554442 137999999996 6999999999999999999987
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.1e-07 Score=83.55 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.+.|++.|.+.+....... ....++.+.++++.+ ++||++.|||++.+|+.+++.+||++|++|++++.
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~-~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLL-EGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCc-CCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 47788999999999998653111111 235788889998877 79999999999999999998899999999999975
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-06 Score=77.71 Aligned_cols=88 Identities=20% Similarity=0.217 Sum_probs=68.0
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 018919 196 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 275 (349)
+...++..+++.+.. +.|++++..+.+.|+|+|.+.-.. . ....+.+..++..+ .++|+++.||| +.+++.
T Consensus 97 ~~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt~---~---~~G~~~l~~~~~~~-~~ipvvaiGGI-~~~n~~ 167 (187)
T PRK07455 97 LIEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPVQ---A---VGGADYIKSLQGPL-GHIPLIPTGGV-TLENAQ 167 (187)
T ss_pred HHHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcCC---c---ccCHHHHHHHHhhC-CCCcEEEeCCC-CHHHHH
Confidence 344455567787775 899999999999999999984220 1 11245666666665 26999999999 669999
Q ss_pred HHHHhCCCEEEEchHHH
Q 018919 276 KALALGASGIFIGRPVV 292 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l 292 (349)
..++.||++|.+++.++
T Consensus 168 ~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 168 AFIQAGAIAVGLSGQLF 184 (187)
T ss_pred HHHHCCCeEEEEehhcc
Confidence 99999999999999875
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-06 Score=78.59 Aligned_cols=116 Identities=24% Similarity=0.302 Sum_probs=88.6
Q ss_pred EEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CC
Q 018919 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KL 205 (349)
Q Consensus 127 ~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~ 205 (349)
+-+....+.+...+.++.+.+.|++.+++|+++|.. .+.++++++++ ++
T Consensus 11 iaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a------------------------------~~~i~~l~~~~~~~ 60 (204)
T TIGR01182 11 VPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVA------------------------------LDAIRLLRKEVPDA 60 (204)
T ss_pred EEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccH------------------------------HHHHHHHHHHCCCC
Confidence 444445678888899999999999999999976521 46688888877 57
Q ss_pred cEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 018919 206 PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 285 (349)
Q Consensus 206 pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V 285 (349)
.|.+..+.+.++++.+.++|+++|+ |.+- +.+.+... +. .++|++- |+.|+.++.+|+.+||+.|
T Consensus 61 ~vGAGTVl~~~~a~~a~~aGA~Fiv-sP~~---------~~~v~~~~-~~--~~i~~iP--G~~TptEi~~A~~~Ga~~v 125 (204)
T TIGR01182 61 LIGAGTVLNPEQLRQAVDAGAQFIV-SPGL---------TPELAKHA-QD--HGIPIIP--GVATPSEIMLALELGITAL 125 (204)
T ss_pred EEEEEeCCCHHHHHHHHHcCCCEEE-CCCC---------CHHHHHHH-HH--cCCcEEC--CCCCHHHHHHHHHCCCCEE
Confidence 7888889999999999999999994 3221 12233222 22 2677775 9999999999999999998
Q ss_pred EE
Q 018919 286 FI 287 (349)
Q Consensus 286 ~i 287 (349)
=+
T Consensus 126 Kl 127 (204)
T TIGR01182 126 KL 127 (204)
T ss_pred EE
Confidence 54
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.3e-06 Score=74.30 Aligned_cols=170 Identities=16% Similarity=0.143 Sum_probs=107.7
Q ss_pred ChhhHHHHHHHHHcCCeEE-ecC-C----CCCCHHHHHhhCCC-ceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCC
Q 018919 87 PEGEYATARAASAAGTIMT-LSS-W----STSSVEEVASTGPG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~-~~~-~----~~~~~e~i~~~~~~-~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~ 159 (349)
++.-..+++++ +.|+..+ +++ + +...++++++..++ ....-+.. -|++. ..++.+.++|++.+.++..+
T Consensus 11 ~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~-~d~~~--~~~~~~~~~Gad~i~vh~~~ 86 (206)
T TIGR03128 11 IEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKT-MDAGE--YEAEQAFAAGADIVTVLGVA 86 (206)
T ss_pred HHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEee-ccchH--HHHHHHHHcCCCEEEEeccC
Confidence 34445677877 6676643 331 1 12234556655552 23333322 14442 24778889999999877643
Q ss_pred CCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe--cC-HHHHHHHHHcCCCEEEEecCC
Q 018919 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV--LT-AEDARIAVQAGAAGIIVSNHG 235 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v--~~-~~~a~~a~~~G~d~I~v~~~g 235 (349)
+. .. .+.++++++ .++++++-.. .+ .+.++.+.+.|+|.|.+.. |
T Consensus 87 ~~-----------------------------~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p-g 135 (206)
T TIGR03128 87 DD-----------------------------ATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHT-G 135 (206)
T ss_pred CH-----------------------------HHHHHHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC-C
Confidence 20 01 245666665 6899887543 22 4788999999999998842 2
Q ss_pred CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 236 ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 236 g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
......++..++.+.++++.++ ..++.++||| +.+.+.+++..||+.+.+||+++.
T Consensus 136 ~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 136 LDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred cCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcC
Confidence 1111223445666777776653 4677779999 778999999999999999999763
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=78.62 Aligned_cols=111 Identities=21% Similarity=0.205 Sum_probs=76.8
Q ss_pred HHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC--CchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 196 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 196 i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
++.+|+.. +..|.+ .+.+.++++.+.+.|+|+|.++.-..+... ..+..++.+.++.+.+ ++||++.||| +++
T Consensus 86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~ 161 (201)
T PRK07695 86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE 161 (201)
T ss_pred HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 44555544 344554 467889999999999999977532222111 1223467777777766 7999999999 899
Q ss_pred HHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018919 273 DVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~ 316 (349)
++.+++.+||++|.+|+++... +........+++.++.
T Consensus 162 ~~~~~~~~Ga~gvav~s~i~~~------~~p~~~~~~~~~~~~~ 199 (201)
T PRK07695 162 NTRDVLAAGVSGIAVMSGIFSS------ANPYSKAKRYAESIKK 199 (201)
T ss_pred HHHHHHHcCCCEEEEEHHHhcC------CCHHHHHHHHHHHHhh
Confidence 9999999999999999999752 2233445555555543
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.2e-07 Score=82.10 Aligned_cols=125 Identities=18% Similarity=0.305 Sum_probs=83.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~ 217 (349)
.+.++..++.|+.+|-+-.|.+..... .+.|+.+++.+.+||..|.- .++..
T Consensus 69 ~~ia~~Ye~~GAa~iSVLTd~~~F~Gs---------------------------~e~L~~v~~~v~~PvL~KDFiiD~yQ 121 (254)
T COG0134 69 VEIAKAYEEGGAAAISVLTDPKYFQGS---------------------------FEDLRAVRAAVDLPVLRKDFIIDPYQ 121 (254)
T ss_pred HHHHHHHHHhCCeEEEEecCccccCCC---------------------------HHHHHHHHHhcCCCeeeccCCCCHHH
Confidence 346777788899999776554321111 35666666666777777763 45555
Q ss_pred HHHHHHcCCCEEEE-----------------------------------------------ecCCCCCCCCchhhHHHHH
Q 018919 218 ARIAVQAGAAGIIV-----------------------------------------------SNHGARQLDYVPATIMALE 250 (349)
Q Consensus 218 a~~a~~~G~d~I~v-----------------------------------------------~~~gg~~~~~~~~~~~~l~ 250 (349)
+..|..+|||+|-+ -|..-+ +-...++...
T Consensus 122 I~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~---tf~vdl~~t~ 198 (254)
T COG0134 122 IYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLT---TLEVDLETTE 198 (254)
T ss_pred HHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcc---hheecHHHHH
Confidence 55555555555443 222111 1122344455
Q ss_pred HHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 251 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 251 ~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
++...++.+..+|..+||++++|+.+....|||++.||+++|.
T Consensus 199 ~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~ 241 (254)
T COG0134 199 KLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMR 241 (254)
T ss_pred HHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhc
Confidence 6666666678999999999999999999999999999999996
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-06 Score=78.88 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHH
Q 018919 139 AQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~ 216 (349)
.+.++...+.|++.+ .+++|....| .+...+.++++.+.+ .|+.+.+ +.+.+
T Consensus 33 ~~~A~~~~~~ga~~lhivDLd~a~~g-------------------------~~~n~~~i~~i~~~~-~~v~vGGGIrs~e 86 (241)
T PRK14114 33 AELVEKLIEEGFTLIHVVDLSKAIEN-------------------------SVENLPVLEKLSEFA-EHIQIGGGIRSLD 86 (241)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcccC-------------------------CcchHHHHHHHHhhc-CcEEEecCCCCHH
Confidence 456777788999987 5566542111 111256778887766 6887765 57888
Q ss_pred HHHHHHHcCCCEEEEec--------------CCCC---------------------C-----------------------
Q 018919 217 DARIAVQAGAAGIIVSN--------------HGAR---------------------Q----------------------- 238 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~--------------~gg~---------------------~----------------------- 238 (349)
+++.+.++|++.|++.. +|.+ .
T Consensus 87 ~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI 166 (241)
T PRK14114 87 YAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEI 166 (241)
T ss_pred HHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEee
Confidence 88888888888877752 0110 0
Q ss_pred -CCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh-----C-CCEEEEchHHHH
Q 018919 239 -LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-ASGIFIGRPVVY 293 (349)
Q Consensus 239 -~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~-----G-A~~V~ig~~~l~ 293 (349)
.++ .-+.++.+.++++.. ++|||++|||++.+|+.++..+ | +++|.+|++++.
T Consensus 167 ~rdGt~~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~ 228 (241)
T PRK14114 167 EKDGTLQEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLE 228 (241)
T ss_pred chhhcCCCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHC
Confidence 001 123567777777665 7999999999999999999887 6 999999999975
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-05 Score=73.00 Aligned_cols=135 Identities=24% Similarity=0.249 Sum_probs=93.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh-cCCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI-TKLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~-~~~pv~vK 210 (349)
.|.....+.++++++.|++.+-+++=- ..| +| +-.| .+.++++|+. +++|+=+-
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmD-----------G~F-vp------------n~tfg~~~i~~i~~~~~~~~~dvH 64 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMD-----------NHY-VP------------NLTFGAPICKALRDYGITAPIDVH 64 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeccc-----------Ccc-cC------------ccccCHHHHHHHHHhCCCCCEEEE
Confidence 466677889999999999987655411 011 12 2234 6789999987 68887665
Q ss_pred E-ecCHH-HHHHHHHcCCCEEEEecC---------------CC---------CC----------CC-----------Cc-
Q 018919 211 G-VLTAE-DARIAVQAGAAGIIVSNH---------------GA---------RQ----------LD-----------YV- 242 (349)
Q Consensus 211 ~-v~~~~-~a~~a~~~G~d~I~v~~~---------------gg---------~~----------~~-----------~~- 242 (349)
. +.+|+ .++...++|+|.|+++-. |- +. .| +|
T Consensus 65 LMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq 144 (220)
T PRK08883 65 LMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQ 144 (220)
T ss_pred eccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCc
Confidence 5 35564 467888999999998621 11 00 01 22
Q ss_pred ---hhhHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 243 ---PATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+..++-+.++++.... ++||.++|||. .+.+.+..++|||.+.+||+++
T Consensus 145 ~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 145 SFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred eecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 2345666666665532 48999999999 7999999999999999999865
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-06 Score=74.73 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=87.4
Q ss_pred EEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CC
Q 018919 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KL 205 (349)
Q Consensus 127 ~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~ 205 (349)
+-+....+.+...+.++.+.+.|+..++||+++|.. .+.|+++++++ ++
T Consensus 7 v~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a------------------------------~~~I~~l~~~~~~~ 56 (201)
T PRK06015 7 IPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAA------------------------------LDAIRAVAAEVEEA 56 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccH------------------------------HHHHHHHHHHCCCC
Confidence 334445678888899999999999999999987521 36688888776 46
Q ss_pred cEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 018919 206 PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 285 (349)
Q Consensus 206 pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V 285 (349)
-|.+..+.+.++++.+.++|+++++--+. ..+.+... +.. ++|++ -|+.|+.++..|+.+||+.|
T Consensus 57 ~vGAGTVl~~e~a~~ai~aGA~FivSP~~----------~~~vi~~a-~~~--~i~~i--PG~~TptEi~~A~~~Ga~~v 121 (201)
T PRK06015 57 IVGAGTILNAKQFEDAAKAGSRFIVSPGT----------TQELLAAA-NDS--DVPLL--PGAATPSEVMALREEGYTVL 121 (201)
T ss_pred EEeeEeCcCHHHHHHHHHcCCCEEECCCC----------CHHHHHHH-HHc--CCCEe--CCCCCHHHHHHHHHCCCCEE
Confidence 67888899999999999999999954211 12233222 222 56655 89999999999999999998
Q ss_pred EE
Q 018919 286 FI 287 (349)
Q Consensus 286 ~i 287 (349)
=+
T Consensus 122 K~ 123 (201)
T PRK06015 122 KF 123 (201)
T ss_pred EE
Confidence 54
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.9e-06 Score=75.23 Aligned_cols=80 Identities=28% Similarity=0.342 Sum_probs=60.6
Q ss_pred ecCHHHHHHHHHcCCCEEEEecCC--CCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNHG--ARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~g--g~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+.+.+++..+.+.|+|.|.++.-. .+... ..+..++.+.++++.. .++||++.||| +.+++.+++++||++|.+|
T Consensus 111 ~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 111 THTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-GDIPIVAIGGI-TPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEe
Confidence 357889999999999999986321 11111 1112367788887766 24999999999 6899999999999999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
+.+..
T Consensus 189 s~i~~ 193 (212)
T PRK00043 189 SAITG 193 (212)
T ss_pred HHhhc
Confidence 98763
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.1e-06 Score=71.63 Aligned_cols=172 Identities=23% Similarity=0.125 Sum_probs=113.4
Q ss_pred ChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC---CceEEEEeecCC----hhHHHHHHHHHHHcCCCEEEEecCC
Q 018919 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYKD----RNVVAQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~---~~~~~Ql~~~~~----~~~~~~~~~~~~~~G~~~i~i~~d~ 159 (349)
.+.-..+++.+.+.|+..++-.. ..++.+.+..+ .+.++++..+ + .+...+.++++.+.|++++.+....
T Consensus 12 ~~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~-~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 12 LEDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFP-TGLTTTEVKVAEVEEAIDLGADEIDVVINI 88 (201)
T ss_pred HHHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCC-CCCCcHHHHHHHHHHHHHcCCCEEEEeccH
Confidence 34456788888889987765332 22344443322 2345555432 2 4567788899999999999875421
Q ss_pred CCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh--cCCcEEEEEec----CHHHH----HHHHHcCCCE
Q 018919 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI--TKLPILVKGVL----TAEDA----RIAVQAGAAG 228 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~--~~~pv~vK~v~----~~~~a----~~a~~~G~d~ 228 (349)
- + .|. .+.+. .+.++.+++. .++|++++.+. +++.. +.+.+.|+|+
T Consensus 89 ~------------~-~~~----------~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~ 145 (201)
T cd00945 89 G------------S-LKE----------GDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADF 145 (201)
T ss_pred H------------H-HhC----------CCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCE
Confidence 0 0 010 01222 5678888887 48999999873 44443 3457899999
Q ss_pred EEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 229 IIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 229 I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
|..+.... .+...+..+.++.+.++.++++++.||+.+.+++..++.+||+++.+|
T Consensus 146 iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 146 IKTSTGFG----GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred EEeCCCCC----CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 99864211 122345666777766644689999999999999999999999999875
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.7e-06 Score=75.67 Aligned_cols=168 Identities=18% Similarity=0.192 Sum_probs=100.4
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC--CceEEEE--eec--CChhHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQL--YVY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~--~~~~~Ql--~~~--~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~ 164 (349)
..+.+.|.++|+..+.- .+..++..++... +....-. |+. ...+.-...++.+.+.|++.+.+-++...
T Consensus 21 ~~lc~~A~~~~~~avcv--~p~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~--- 95 (211)
T TIGR00126 21 ITLCAQAKTYKFAAVCV--NPSYVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINIGA--- 95 (211)
T ss_pred HHHHHHHHhhCCcEEEe--CHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHh---
Confidence 46777788888665421 2222332222211 1111111 222 22333345667788899999987665321
Q ss_pred hhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-----cCHHH----HHHHHHcCCCEEEEecC
Q 018919 165 READIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 165 r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-----~~~~~----a~~a~~~G~d~I~v~~~ 234 (349)
+ . . .+.+. .++++++++..+ .+.+|.+ ++.++ ++.+.++|+|+|..|..
T Consensus 96 --------l--~------~----g~~~~v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTG 154 (211)
T TIGR00126 96 --------L--K------D----GNEEVVYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTG 154 (211)
T ss_pred --------h--h------C----CcHHHHHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 0 0 0 01222 567888888763 3333444 33333 56789999999999742
Q ss_pred CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 235 GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 235 gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
. ..+..+.+.+..+++.++++++|-++|||++.+|+++++++||+.++..
T Consensus 155 -f---~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 155 -F---GAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGAS 204 (211)
T ss_pred -C---CCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcc
Confidence 1 1233455666666666666899999999999999999999999876543
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-05 Score=71.40 Aligned_cols=168 Identities=20% Similarity=0.145 Sum_probs=105.8
Q ss_pred ChhhHHHHHHHHHcCCeEE-ec-----CCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCC
Q 018919 87 PEGEYATARAASAAGTIMT-LS-----SWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~-~~-----~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~ 159 (349)
++.-..+++++.+. +..+ ++ +++...++.+++..+ -+....+.. .+++ ...++.+.++|++.+.++...
T Consensus 12 ~~~~~~~~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v-~~~~--~~~~~~~~~aGad~i~~h~~~ 87 (202)
T cd04726 12 LEEALELAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKT-ADAG--ALEAEMAFKAGADIVTVLGAA 87 (202)
T ss_pred HHHHHHHHHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEe-cccc--HHHHHHHHhcCCCEEEEEeeC
Confidence 34445677777776 4433 22 111223445555444 234444443 2333 134577889999999876532
Q ss_pred CCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEE--EEecCHHHHHHHHHcCCCEEEEec-CC
Q 018919 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSN-HG 235 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~v--K~v~~~~~a~~a~~~G~d~I~v~~-~g 235 (349)
+ +.. .+.++.+++ .++++++ =+..+++++..+...|+|.+.+.- ..
T Consensus 88 ~-----------------------------~~~~~~~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~ 137 (202)
T cd04726 88 P-----------------------------LSTIKKAVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGID 137 (202)
T ss_pred C-----------------------------HHHHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccc
Confidence 1 111 244666664 5888775 345688888889999999988831 11
Q ss_pred CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 236 ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 236 g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+ +..+.+...+.+.++.+.. ++|++++|||+ .+++.+++..|||+|.+||+++
T Consensus 138 ~-~~~~~~~~~~~i~~~~~~~--~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 138 A-QAAGGWWPEDDLKKVKKLL--GVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred c-cccCCCCCHHHHHHHHhhc--CCCEEEECCcC-HHHHHHHHhcCCCEEEEeehhc
Confidence 1 1111244566677666543 79999999996 8999999999999999999975
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.5e-06 Score=73.21 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=106.5
Q ss_pred ChhhHHHHHHHHHcCCeEE-ecCCCCCC---HHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 87 PEGEYATARAASAAGTIMT-LSSWSTSS---VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~-~~~~~~~~---~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
++.-..+++++.+.|+..+ ++-.+... ++++++..|.. .+-.-. =.+.+.++.+.++|++.++ +|.
T Consensus 19 ~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~-~vGAGT----Vl~~~~a~~a~~aGA~Fiv----sP~- 88 (204)
T TIGR01182 19 VDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDA-LIGAGT----VLNPEQLRQAVDAGAQFIV----SPG- 88 (204)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCC-EEEEEe----CCCHHHHHHHHHcCCCEEE----CCC-
Confidence 3334589999999999866 33333333 34455444421 111111 1234568888999999874 221
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCc
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYV 242 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~ 242 (349)
.+ .+.++..+ +.++|++- ++.|+.++..|.++|+|.|.++-.+ .-+|
T Consensus 89 -------------------------~~---~~v~~~~~-~~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~---~~GG 135 (204)
T TIGR01182 89 -------------------------LT---PELAKHAQ-DHGIPIIP-GVATPSEIMLALELGITALKLFPAE---VSGG 135 (204)
T ss_pred -------------------------CC---HHHHHHHH-HcCCcEEC-CCCCHHHHHHHHHCCCCEEEECCch---hcCC
Confidence 01 23455544 56899876 7899999999999999999996432 1123
Q ss_pred hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 243 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 243 ~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+. .++.++.-+ .+++++.+|||.- +++.++|++||.+|.+|+.++.
T Consensus 136 ~~---yikal~~pl-p~i~~~ptGGV~~-~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 136 VK---MLKALAGPF-PQVRFCPTGGINL-ANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred HH---HHHHHhccC-CCCcEEecCCCCH-HHHHHHHhCCCEEEEEChhhcC
Confidence 43 344444444 3799999999987 8999999999999999998763
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.2e-06 Score=87.26 Aligned_cols=128 Identities=21% Similarity=0.284 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~~ 217 (349)
.+.++..++.|+.+|-+-.+....+ . -+++++.+|+.+++||+.|. +.++.+
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe~~~F~--------------------------G-s~~~l~~vr~~v~~PvLrKDFIid~~Q 125 (695)
T PRK13802 73 AALAREYEQGGASAISVLTEGRRFL--------------------------G-SLDDFDKVRAAVHIPVLRKDFIVTDYQ 125 (695)
T ss_pred HHHHHHHHHcCCcEEEEecCcCcCC--------------------------C-CHHHHHHHHHhCCCCEEeccccCCHHH
Confidence 4567778889999997655432110 0 04778888888888888888 467777
Q ss_pred HHHHHHcCCCEEEEecC--C--------------C----------------------------CCCCCchhhHHHHHHHH
Q 018919 218 ARIAVQAGAAGIIVSNH--G--------------A----------------------------RQLDYVPATIMALEEVV 253 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~--g--------------g----------------------------~~~~~~~~~~~~l~~i~ 253 (349)
+..+..+|||+|.+.-. + | |.+.+-...++...++.
T Consensus 126 I~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~ 205 (695)
T PRK13802 126 IWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELA 205 (695)
T ss_pred HHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHH
Confidence 88888888888876411 0 0 11111122344555666
Q ss_pred HHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 254 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 254 ~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
..++.++.+|+.+||++++|+..+..+|||+|.||++++.
T Consensus 206 ~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~ 245 (695)
T PRK13802 206 ADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVAT 245 (695)
T ss_pred hhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhC
Confidence 6666678899999999999999999999999999998875
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-05 Score=79.63 Aligned_cols=173 Identities=18% Similarity=0.174 Sum_probs=104.3
Q ss_pred CChhhHHHHHHHHHcCCeEE-ecCCC--C---CCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCC
Q 018919 86 HPEGEYATARAASAAGTIMT-LSSWS--T---SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 86 ~~~~~~~la~aa~~~G~~~~-~~~~~--~---~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~ 159 (349)
+++....+++.+-+.|+..+ ++.-. . ..++++.+..+...++.-....+. -...++.+.++|++++.++...
T Consensus 14 ~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~--g~~~v~~a~~aGAdgV~v~g~~ 91 (430)
T PRK07028 14 ELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDT--GAIEVEMAAKAGADIVCILGLA 91 (430)
T ss_pred CHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCCCCEEEEEeeeccc--hHHHHHHHHHcCCCEEEEecCC
Confidence 44455678888888887654 22100 1 122333433333333211111111 1236778889999997754211
Q ss_pred CCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe--cC-HHHHHHHHHcCCCEEEEecCCC
Q 018919 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV--LT-AEDARIAVQAGAAGIIVSNHGA 236 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v--~~-~~~a~~a~~~G~d~I~v~~~gg 236 (349)
+ +....+.++.+++ .++++++..+ .+ .+.++.+.+.|+|+|.+.. |.
T Consensus 92 ~----------------------------~~~~~~~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p-g~ 141 (430)
T PRK07028 92 D----------------------------DSTIEDAVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVHV-GI 141 (430)
T ss_pred C----------------------------hHHHHHHHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe-cc
Confidence 0 0001234566665 5888876422 23 4667888999999997752 22
Q ss_pred CCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 237 RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 237 ~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.....++..++.++++++.+ ++||++.||| +.+.+.++++.||++|.+||.++.
T Consensus 142 ~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 142 DQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred chhhcCCChHHHHHHHHhhC--CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcC
Confidence 11112233456777777665 5999999999 679999999999999999999864
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-05 Score=71.23 Aligned_cols=196 Identities=13% Similarity=0.155 Sum_probs=113.1
Q ss_pred ceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCC---C-C--CCHHHHHhhCC-CceEEEEee---
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW---S-T--SSVEEVASTGP-GIRFFQLYV--- 131 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~---~-~--~~~e~i~~~~~-~~~~~Ql~~--- 131 (349)
..++.|++|++.+++..=.+ .+ ...+.++....|+-.+.-.. . . ..-+.+.+..+ .. +.+.+
T Consensus 7 ~l~i~g~~f~SRL~lGTgky---~s---~~~~~~ai~aSg~evvTvalRR~~~~~~~~~~~~l~~i~~~~--~~~LPNTa 78 (267)
T CHL00162 7 KLKIGNKSFNSRLMLGTGKY---KS---LKDAIQSIEASGCEIVTVAIRRLNNNLLNDNSNLLNGLDWNK--LWLLPNTA 78 (267)
T ss_pred ceEECCEEeecceEEecCCC---CC---HHHHHHHHHHhCCcEEEEEEEEeccCcCCCcchHHHhhchhc--cEECCcCc
Confidence 57899999999999876322 12 23577778888877553111 1 0 01122222222 11 12222
Q ss_pred -cCChhHHHHHHHHHHHcC-------CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc
Q 018919 132 -YKDRNVVAQLVRRAERAG-------FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT 203 (349)
Q Consensus 132 -~~~~~~~~~~~~~~~~~G-------~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~ 203 (349)
..+.+.-...++.+++.+ -++|-+-+=.- ..+. -|+..+.++..+...
T Consensus 79 Gc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D----------~~~L--------------lPD~~etl~Aae~Lv 134 (267)
T CHL00162 79 GCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISD----------PKYL--------------LPDPIGTLKAAEFLV 134 (267)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCC----------Cccc--------------CCChHHHHHHHHHHH
Confidence 233343344444445543 45554333110 0011 122234444433332
Q ss_pred --CCcEEEEEecCHHHHHHHHHcCCCEEEEecCC-CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh
Q 018919 204 --KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 204 --~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~ 280 (349)
+.-|+.=...++-.|+++.++||..|.--+.. |+ .-|..+...|..+.+.. ++||+.++||.+++|+.+++++
T Consensus 135 ~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGS--g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmEl 210 (267)
T CHL00162 135 KKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGS--GQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMEL 210 (267)
T ss_pred HCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHc
Confidence 33343333467888999999999998753321 11 12344556666666654 7999999999999999999999
Q ss_pred CCCEEEEchHHHH
Q 018919 281 GASGIFIGRPVVY 293 (349)
Q Consensus 281 GA~~V~ig~~~l~ 293 (349)
|||+|++.|++..
T Consensus 211 GaDgVL~nSaIak 223 (267)
T CHL00162 211 GASGVLLNTAVAQ 223 (267)
T ss_pred CCCEEeecceeec
Confidence 9999999998874
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.4e-06 Score=81.43 Aligned_cols=128 Identities=20% Similarity=0.306 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHh-cCCcEEEEE-ecCHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTI-TKLPILVKG-VLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~pv~vK~-v~~~~ 216 (349)
.+.++..++.|+.+|-+-.|....+.. .++++.+|+. +++||+.|. +.++.
T Consensus 142 ~~iA~~Ye~~GA~aISVLTd~~~F~Gs---------------------------~e~L~~vr~~~v~lPvLrKDFIID~y 194 (338)
T PLN02460 142 VEIAQAYEKGGAACLSVLTDEKYFQGS---------------------------FENLEAIRNAGVKCPLLCKEFIVDAW 194 (338)
T ss_pred HHHHHHHHhCCCcEEEEecCcCcCCCC---------------------------HHHHHHHHHcCCCCCEeeccccCCHH
Confidence 466777788899998765543221100 4667777776 778888887 35666
Q ss_pred HHHHHHHcCCCEEEEecC-----------------C--------------------C--------CCCCCchhhHHHHHH
Q 018919 217 DARIAVQAGAAGIIVSNH-----------------G--------------------A--------RQLDYVPATIMALEE 251 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~-----------------g--------------------g--------~~~~~~~~~~~~l~~ 251 (349)
....+..+|||+|.+.-. | | |.+.+-...++...+
T Consensus 195 QI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~ 274 (338)
T PLN02460 195 QIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKK 274 (338)
T ss_pred HHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHH
Confidence 666666666666654310 0 0 111111112333334
Q ss_pred HHH-----Hh-cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 252 VVK-----AT-QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 252 i~~-----~~-~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.. .+ +.++.+++.+||++++|+..+..+|||+|.||..++.
T Consensus 275 L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr 322 (338)
T PLN02460 275 LLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVK 322 (338)
T ss_pred HhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 443 23 2356789999999999999999999999999999986
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.5e-05 Score=72.19 Aligned_cols=195 Identities=18% Similarity=0.220 Sum_probs=115.1
Q ss_pred ceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe---cCCC--CCCHHHHHhhCC-CceEEEEee----
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL---SSWS--TSSVEEVASTGP-GIRFFQLYV---- 131 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~---~~~~--~~~~e~i~~~~~-~~~~~Ql~~---- 131 (349)
...+.|++|++.+++..=-+ .+ ...+.++....|+-.+. .-.. ....+.+.+..+ .. +.+.+
T Consensus 74 ~~~i~~~~~~sRl~~Gtg~y---~s---~~~~~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~~--~~~lpNTag 145 (326)
T PRK11840 74 SWTVAGKTFSSRLLVGTGKY---KD---FEETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKK--YTYLPNTAG 145 (326)
T ss_pred CeEECCEEEecceeEecCCC---CC---HHHHHHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhcC--CEECccCCC
Confidence 57889999999999876222 12 23577788888877652 1111 111122222222 11 12222
Q ss_pred cCChhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEE
Q 018919 132 YKDRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPIL 208 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~ 208 (349)
..+.+.-...++.++++ |-++|-+-+=... .+ .-|+..+.++..+... +.-++
T Consensus 146 ~~ta~eAv~~a~lare~~~~~~iKlEvi~e~----------~~--------------llpd~~~~v~aa~~L~~~Gf~v~ 201 (326)
T PRK11840 146 CYTAEEAVRTLRLAREAGGWDLVKLEVLGDA----------KT--------------LYPDMVETLKATEILVKEGFQVM 201 (326)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEEcCCC----------CC--------------cccCHHHHHHHHHHHHHCCCEEE
Confidence 23444444555556665 6677655442110 01 1122234455554432 44443
Q ss_pred EEEecCHHHHHHHHHcCCCEEEE-ec-CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 209 VKGVLTAEDARIAVQAGAAGIIV-SN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 209 vK~v~~~~~a~~a~~~G~d~I~v-~~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
+=...++..++++.++|+-+|-- .. -|. .-|....+.+..+.+.. ++||+.++||.+++|+.+++++|||+|.
T Consensus 202 ~yc~~d~~~a~~l~~~g~~avmPl~~pIGs---g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGadgVL 276 (326)
T PRK11840 202 VYCSDDPIAAKRLEDAGAVAVMPLGAPIGS---GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGCDGVL 276 (326)
T ss_pred EEeCCCHHHHHHHHhcCCEEEeeccccccC---CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 33357899999999999954432 11 111 01233566777777764 7999999999999999999999999999
Q ss_pred EchHHHH
Q 018919 287 IGRPVVY 293 (349)
Q Consensus 287 ig~~~l~ 293 (349)
+.|++..
T Consensus 277 ~nSaIa~ 283 (326)
T PRK11840 277 MNTAIAE 283 (326)
T ss_pred Ecceecc
Confidence 9998863
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-06 Score=84.00 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecC--CC---------------------------------
Q 018919 193 DEDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--GA--------------------------------- 236 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~--gg--------------------------------- 236 (349)
+++++.+|+.+++||+.|.. .++.+...+..+|||+|.+.-. +.
T Consensus 99 ~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~ 178 (454)
T PRK09427 99 FDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIAL 178 (454)
T ss_pred HHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhC
Confidence 46677777777778877774 5666667777777777665310 00
Q ss_pred ---------CCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHH
Q 018919 237 ---------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVL 307 (349)
Q Consensus 237 ---------~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l 307 (349)
|.+.+-.-.+....++...++.++.+|+.+||++++|+.++ ..|||+|.||+.++.+ +...+.+
T Consensus 179 ~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~~------~d~~~~~ 251 (454)
T PRK09427 179 GAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSLMAE------DDLELAV 251 (454)
T ss_pred CCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcCC------CCHHHHH
Confidence 11111112334445556666667889999999999999875 5589999999999863 2222333
Q ss_pred HHHHHHHHHHHHHcCCCChhhhc
Q 018919 308 EMLREEFELAMALSGCRSLKEIT 330 (349)
Q Consensus 308 ~~l~~el~~~m~~~G~~~i~~l~ 330 (349)
..+.. ...+.||.++.+|+.
T Consensus 252 ~~L~~---~~vKICGit~~eda~ 271 (454)
T PRK09427 252 RKLIL---GENKVCGLTRPQDAK 271 (454)
T ss_pred HHHhc---cccccCCCCCHHHHH
Confidence 33322 345789999888775
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.8e-06 Score=75.10 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 244 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 244 ~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
+.++.+.++.+.+ ++||+++|||++.+|+.++..+||++|.+|++++.+
T Consensus 171 ~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 171 PNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 3567788887766 799999999999999999888999999999999753
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.1e-06 Score=83.38 Aligned_cols=95 Identities=21% Similarity=0.330 Sum_probs=71.6
Q ss_pred CCch-HHHHHHHHHhcCCcEEEEEecC----HHHHHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcE
Q 018919 189 LGKM-DEDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPV 262 (349)
Q Consensus 189 ~~~~-~~~i~~i~~~~~~pv~vK~v~~----~~~a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipv 262 (349)
++++ .+.++++++. . +.+|...+ .+.++.++++|+|.|++++.-..|.+ ++...+..+.++.+.+ ++||
T Consensus 117 ~p~l~~~ii~~vr~a-~--VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPV 191 (369)
T TIGR01304 117 KPELLGERIAEVRDS-G--VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPV 191 (369)
T ss_pred ChHHHHHHHHHHHhc-c--eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCE
Confidence 5666 6778999885 2 77888654 37789999999999999643211222 2223455677777766 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 263 FLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 263 ia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
|+ |+|.+.+|+.+++.+|||+|++|+
T Consensus 192 I~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 192 IA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred EE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 98 999999999999999999999885
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.5e-06 Score=72.76 Aligned_cols=115 Identities=27% Similarity=0.284 Sum_probs=82.4
Q ss_pred EeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcE
Q 018919 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPI 207 (349)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv 207 (349)
+....+.+...+.++.+.+.|...++||+++|. ..+.|+.+++++ ++-|
T Consensus 13 Vir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~------------------------------a~~~I~~l~~~~p~~~v 62 (196)
T PF01081_consen 13 VIRGDDPEDAVPIAEALIEGGIRAIEITLRTPN------------------------------ALEAIEALRKEFPDLLV 62 (196)
T ss_dssp EETTSSGGGHHHHHHHHHHTT--EEEEETTSTT------------------------------HHHHHHHHHHHHTTSEE
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEecCCcc------------------------------HHHHHHHHHHHCCCCee
Confidence 444567888889999999999999999997652 146688888877 5667
Q ss_pred EEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 208 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 208 ~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+..+.+.++++.+.++|+++++--+. +-+.+....+. ++|++ -|+.|+.++.+|+.+||+.|=+
T Consensus 63 GAGTV~~~e~a~~a~~aGA~FivSP~~----------~~~v~~~~~~~---~i~~i--PG~~TptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 63 GAGTVLTAEQAEAAIAAGAQFIVSPGF----------DPEVIEYAREY---GIPYI--PGVMTPTEIMQALEAGADIVKL 127 (196)
T ss_dssp EEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHHHH---TSEEE--EEESSHHHHHHHHHTT-SEEEE
T ss_pred EEEeccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHHc---CCccc--CCcCCHHHHHHHHHCCCCEEEE
Confidence 888889999999999999999965211 12333333322 57666 7899999999999999999976
Q ss_pred c
Q 018919 288 G 288 (349)
Q Consensus 288 g 288 (349)
=
T Consensus 128 F 128 (196)
T PF01081_consen 128 F 128 (196)
T ss_dssp T
T ss_pred e
Confidence 3
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.5e-05 Score=66.98 Aligned_cols=173 Identities=18% Similarity=0.131 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHcCCeEEecCCCC------CCH----HHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecC
Q 018919 89 GEYATARAASAAGTIMTLSSWST------SSV----EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (349)
Q Consensus 89 ~~~~la~aa~~~G~~~~~~~~~~------~~~----e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d 158 (349)
++..-.+.+.+.|..-.++|.-+ .+. +++.+..+++..+|++. .+.+.+.+.++++.+..- -+.+-+.
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~g~vs~qv~~-~~~~~mi~~a~~l~~~~~-~i~iKIP 85 (213)
T TIGR00875 8 ANVEEIKKAAELGILAGVTTNPSLIAKEGRSFWEVLKEIQEAVEGPVSAETIS-LDAEGMVEEAKELAKLAP-NIVVKIP 85 (213)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCHHHHHHHHHHhcCCcEEEEEee-CCHHHHHHHHHHHHHhCC-CeEEEeC
Confidence 35556666777776655555411 122 33444445678889975 577777777777777653 3555553
Q ss_pred CCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ 238 (349)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~ 238 (349)
+... | .+.++.+++. ++++.+-.+.+.+.|..|.++|++.|.. .=||-
T Consensus 86 ~T~~---------------G--------------l~A~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi 133 (213)
T TIGR00875 86 MTSE---------------G--------------LKAVKILKKE-GIKTNVTLVFSAAQALLAAKAGATYVSP--FVGRL 133 (213)
T ss_pred CCHH---------------H--------------HHHHHHHHHC-CCceeEEEecCHHHHHHHHHcCCCEEEe--ecchH
Confidence 3210 0 3557777654 8999998899999999999999998865 33443
Q ss_pred CCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 239 LDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 239 ~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.+.|...+..+.++.+.+ +.+..|++.+ +|+..++.+++.+|||.|-+.-.++..+.
T Consensus 134 ~d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~l~ 193 (213)
T TIGR00875 134 DDIGGDGMKLIEEVKTIFENHAPDTEVIAAS-VRHPRHVLEAALIGADIATMPLDVMQQLF 193 (213)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCCCEEEEec-cCCHHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence 333444566666666554 2356766655 99999999999999999999999988764
|
This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-05 Score=73.03 Aligned_cols=101 Identities=26% Similarity=0.295 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEecC--------------CC----------C-CCC-----C
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH--------------GA----------R-QLD-----Y 241 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~~--------------gg----------~-~~~-----~ 241 (349)
.+.++++.+..++||++.+ +.+.++++.+.+.|++.+++... |. . ..+ .
T Consensus 62 ~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~~ 141 (228)
T PRK04128 62 LDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEES 141 (228)
T ss_pred HHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEcC
Confidence 5778888888899998765 78999999999999999988521 11 0 000 1
Q ss_pred chhhHHHHHHH------------------------HHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 242 VPATIMALEEV------------------------VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 242 ~~~~~~~l~~i------------------------~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
+....+.+.++ .+.. .++|||++|||++.+|+.++..+|+++|.+|++|+++
T Consensus 142 ~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 142 SIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 11112222222 2221 2689999999999999999999999999999999863
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.9e-06 Score=72.94 Aligned_cols=122 Identities=26% Similarity=0.291 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcC-CcEEEEEe-
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITK-LPILVKGV- 212 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~-~pv~vK~v- 212 (349)
+.....++.+.+.|++.+.+.++... + .. .+.+. .+++.++++..+ +|+ |.+
T Consensus 69 ~~k~~eve~A~~~GAdevdvv~~~g~-----------~--~~----------~~~~~~~~ei~~v~~~~~g~~l--kvI~ 123 (203)
T cd00959 69 EVKVAEAREAIADGADEIDMVINIGA-----------L--KS----------GDYEAVYEEIAAVVEACGGAPL--KVIL 123 (203)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecHHH-----------H--hC----------CCHHHHHHHHHHHHHhcCCCeE--EEEE
Confidence 34445577888899999988776410 0 00 01122 567888888764 554 333
Q ss_pred ----cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCE
Q 018919 213 ----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 284 (349)
Q Consensus 213 ----~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~ 284 (349)
.+.+. ++.+.++|+|+|..+ +|.. ....+.+.+..+.+.++.++||-++|||++.+++++++.+||+.
T Consensus 124 e~~~l~~~~i~~a~ria~e~GaD~IKTs-TG~~---~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~r 199 (203)
T cd00959 124 ETGLLTDEEIIKACEIAIEAGADFIKTS-TGFG---PGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATR 199 (203)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCEEEcC-CCCC---CCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhh
Confidence 34333 677999999999997 2221 22344555555555554579999999999999999999999987
Q ss_pred EE
Q 018919 285 IF 286 (349)
Q Consensus 285 V~ 286 (349)
+.
T Consensus 200 iG 201 (203)
T cd00959 200 IG 201 (203)
T ss_pred cc
Confidence 64
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-05 Score=71.25 Aligned_cols=152 Identities=19% Similarity=0.206 Sum_probs=104.9
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcC---CCCcC--ccccc-----CC---CCCCchHHHHHH
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT---LPPFL--TLKNF-----QG---LDLGKMDEDVKW 198 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~---~p~~~--~~~~~-----~~---~~~~~~~~~i~~ 198 (349)
..+.+....+++.+.+.|.++|+||+++|....-.+.+++.+. +..|- +.... .| .++|.+-..+-+
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~~ 100 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVAK 100 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCCCCHHHHH
Confidence 3678888899999999999999999999987666666666553 00000 00000 01 456777344444
Q ss_pred HHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH
Q 018919 199 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 278 (349)
Q Consensus 199 i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal 278 (349)
.....++|++ -++.|+.++..|+++|++.+.++-... .+|+.- +..+.--+ .+++++..|||.. ..+..++
T Consensus 101 ~a~~~~ip~~-PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~~~---~ka~~gP~-~~v~~~pTGGVs~-~N~~~yl 171 (211)
T COG0800 101 AANRYGIPYI-PGVATPTEIMAALELGASALKFFPAEV---VGGPAM---LKALAGPF-PQVRFCPTGGVSL-DNAADYL 171 (211)
T ss_pred HHHhCCCccc-CCCCCHHHHHHHHHcChhheeecCccc---cCcHHH---HHHHcCCC-CCCeEeecCCCCH-HHHHHHH
Confidence 4455689987 478999999999999999999974321 123322 22111111 3699999999987 5999999
Q ss_pred HhCCCEEEEchHHH
Q 018919 279 ALGASGIFIGRPVV 292 (349)
Q Consensus 279 ~~GA~~V~ig~~~l 292 (349)
++|+.+|.+|+-+.
T Consensus 172 a~gv~avG~Gs~l~ 185 (211)
T COG0800 172 AAGVVAVGLGSWLV 185 (211)
T ss_pred hCCceEEecCcccc
Confidence 99999999998665
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-05 Score=70.55 Aligned_cols=117 Identities=20% Similarity=0.255 Sum_probs=89.1
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-C
Q 018919 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-K 204 (349)
Q Consensus 126 ~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~ 204 (349)
.+-+....+.+...+.++.+.+.|++.++++++.|.. .+.|+.+++++ +
T Consensus 17 ~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~------------------------------~~~I~~l~~~~p~ 66 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAA------------------------------LEAIRLIAKEVPE 66 (212)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccH------------------------------HHHHHHHHHHCCC
Confidence 3444555788888899999999999999999876421 35688888877 4
Q ss_pred CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCE
Q 018919 205 LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 284 (349)
Q Consensus 205 ~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~ 284 (349)
+-|.+..+.+.++++.+.++|+++++.-+. . .+.+....+ . .+|++ -|+.|+.++.+++.+||+.
T Consensus 67 ~~IGAGTVl~~~~a~~a~~aGA~FivsP~~-------~---~~vi~~a~~-~--~i~~i--PG~~TptEi~~a~~~Ga~~ 131 (212)
T PRK05718 67 ALIGAGTVLNPEQLAQAIEAGAQFIVSPGL-------T---PPLLKAAQE-G--PIPLI--PGVSTPSELMLGMELGLRT 131 (212)
T ss_pred CEEEEeeccCHHHHHHHHHcCCCEEECCCC-------C---HHHHHHHHH-c--CCCEe--CCCCCHHHHHHHHHCCCCE
Confidence 667888889999999999999999976321 1 133333332 1 45555 7899999999999999999
Q ss_pred EEE
Q 018919 285 IFI 287 (349)
Q Consensus 285 V~i 287 (349)
|-+
T Consensus 132 vKl 134 (212)
T PRK05718 132 FKF 134 (212)
T ss_pred EEE
Confidence 877
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.6e-05 Score=69.58 Aligned_cols=186 Identities=18% Similarity=0.187 Sum_probs=108.5
Q ss_pred HHHHHHHHcCCeEE-ecCC----CC---C---CHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCC-
Q 018919 92 ATARAASAAGTIMT-LSSW----ST---S---SVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT- 159 (349)
Q Consensus 92 ~la~aa~~~G~~~~-~~~~----~~---~---~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~- 159 (349)
...+.+.+.|+..+ +-.+ .+ . ..+.+++....+.-+.|.. .+++ +.++.+.+.|++.+.+|+..
T Consensus 24 ~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv-~~p~---d~~~~~~~~gad~v~vH~~q~ 99 (229)
T PLN02334 24 EEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMV-TNPE---DYVPDFAKAGASIFTFHIEQA 99 (229)
T ss_pred HHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEecc-CCHH---HHHHHHHHcCCCEEEEeeccc
Confidence 46677778887654 2211 11 1 1233333311222344443 3444 34566688899999888861
Q ss_pred CCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec-C-HHHHHHHHHcC-CCEEEEec-CC
Q 018919 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL-T-AEDARIAVQAG-AAGIIVSN-HG 235 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~-~-~~~a~~a~~~G-~d~I~v~~-~g 235 (349)
.. ....+.++++++. +.-+.+-... + .+.++...+.| +|.|.+.. +.
T Consensus 100 ~~----------------------------d~~~~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~p 150 (229)
T PLN02334 100 ST----------------------------IHLHRLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEP 150 (229)
T ss_pred cc----------------------------hhHHHHHHHHHHC-CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEec
Confidence 10 0013567777653 4433322221 3 44555555664 99996643 22
Q ss_pred CC-CCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 236 AR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 236 g~-~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
+. .....+..++.+.++++.. .++||.++||| +.+++.+.+++|||.+.+||+++. .+.....++.+++++
T Consensus 151 g~~~~~~~~~~~~~i~~~~~~~-~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~------~~d~~~~~~~l~~~~ 222 (229)
T PLN02334 151 GFGGQSFIPSMMDKVRALRKKY-PELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFG------APDYAEVISGLRASV 222 (229)
T ss_pred CCCccccCHHHHHHHHHHHHhC-CCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhC------CCCHHHHHHHHHHHH
Confidence 22 1123345567777776654 25799999999 689999999999999999999753 223445566666666
Q ss_pred HHHH
Q 018919 315 ELAM 318 (349)
Q Consensus 315 ~~~m 318 (349)
+..|
T Consensus 223 ~~~~ 226 (229)
T PLN02334 223 EKAA 226 (229)
T ss_pred HHhh
Confidence 6554
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.9e-05 Score=70.15 Aligned_cols=124 Identities=26% Similarity=0.378 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHH---HhcCCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQ---TITKLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~---~~~~~pv~vK 210 (349)
+.......++++.+.|++++.+.+..... . ....++.+++++ +.+++|+++=
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~--~-----------------------~~~~~~~i~~v~~~~~~~g~~~iie 128 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSE--E-----------------------EREMLEELARVAAEAHKYGLPLIAW 128 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCc--h-----------------------HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 33444556788889999998554432100 0 001133444444 4578999873
Q ss_pred Eec---------CHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCC--CCHHH--
Q 018919 211 GVL---------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV--RRGTD-- 273 (349)
Q Consensus 211 ~v~---------~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI--~~~~d-- 273 (349)
... +.+. ++.+.++|+|+|.++..+ .++.+.++.+.. .+||++.||| .+.+|
T Consensus 129 ~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l 197 (235)
T cd00958 129 MYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG---------DAESFKEVVEGC--PVPVVIAGGPKKDSEEEFL 197 (235)
T ss_pred EeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC--CCCEEEeCCCCCCCHHHHH
Confidence 322 2333 556889999999995322 356677777765 6899999998 66766
Q ss_pred --HHHHHHhCCCEEEEchHHHH
Q 018919 274 --VFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 274 --v~kal~~GA~~V~ig~~~l~ 293 (349)
+.+++.+||++|.+||.++.
T Consensus 198 ~~~~~~~~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 198 KMVYDAMEAGAAGVAVGRNIFQ 219 (235)
T ss_pred HHHHHHHHcCCcEEEechhhhc
Confidence 77788999999999999874
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.4e-06 Score=75.78 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.++|+|.+.+.+-.+ .....++.++.+.++++.+ ++||+++|||++.+|+.+++..||++|++|+.++.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 3678889999999998875432 1123455788888888877 69999999999999999999999999999998874
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-05 Score=71.78 Aligned_cols=99 Identities=18% Similarity=0.075 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEecC---------------CCC--------------C----
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GAR--------------Q---- 238 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~~---------------gg~--------------~---- 238 (349)
.+.++++.+.+.+|+.+.+ +.+.++++.+.+.|+|.|++... |.+ .
T Consensus 63 ~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~ 142 (243)
T TIGR01919 63 EMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNR 142 (243)
T ss_pred HHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECC
Confidence 5678888888889987765 78999999999999999988521 110 0
Q ss_pred -C-----------------------------CC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH---HhCCC
Q 018919 239 -L-----------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL---ALGAS 283 (349)
Q Consensus 239 -~-----------------------------~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal---~~GA~ 283 (349)
+ ++ .-+.++.+.++++.. ++|||++|||++.+|+.+.- ..|++
T Consensus 143 Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv~ 220 (243)
T TIGR01919 143 GWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGVS 220 (243)
T ss_pred CeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCee
Confidence 0 00 112445555655554 79999999999999998763 35999
Q ss_pred EEEEchHHHH
Q 018919 284 GIFIGRPVVY 293 (349)
Q Consensus 284 ~V~ig~~~l~ 293 (349)
+|.+|++++.
T Consensus 221 gvivg~Al~~ 230 (243)
T TIGR01919 221 VAIGGKLLYA 230 (243)
T ss_pred EEEEhHHHHc
Confidence 9999999875
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.4e-05 Score=72.16 Aligned_cols=120 Identities=26% Similarity=0.380 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHH---HHHHHHHhcCCcEEEEE---
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE---DVKWLQTITKLPILVKG--- 211 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~---~i~~i~~~~~~pv~vK~--- 211 (349)
....++++.+.|++++.+.+..-.. .+ ....+ .+.++.+.+++|+++-.
T Consensus 95 ~~~~ve~A~~~Gad~v~~~~~~g~~--~~-----------------------~~~~~~~~~v~~~~~~~g~pl~vi~~~~ 149 (267)
T PRK07226 95 LVGTVEEAIKLGADAVSVHVNVGSE--TE-----------------------AEMLEDLGEVAEECEEWGMPLLAMMYPR 149 (267)
T ss_pred eeecHHHHHHcCCCEEEEEEecCCh--hH-----------------------HHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 3456778889999998876643110 00 01123 34444555789987731
Q ss_pred ---e---cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCC--CHHHHHHHH-
Q 018919 212 ---V---LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR--RGTDVFKAL- 278 (349)
Q Consensus 212 ---v---~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~--~~~dv~kal- 278 (349)
+ .+.+. ++.+.++|+|+|..+-.| ..+.+.++.+.. ++||++.|||+ +.+++++.+
T Consensus 150 g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~---------~~~~l~~~~~~~--~ipV~a~GGi~~~~~~~~l~~v~ 218 (267)
T PRK07226 150 GPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG---------DPESFREVVEGC--PVPVVIAGGPKTDTDREFLEMVR 218 (267)
T ss_pred CCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC---------CHHHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHH
Confidence 1 23333 677889999999886221 245666666544 79999999999 777777665
Q ss_pred ---HhCCCEEEEchHHHH
Q 018919 279 ---ALGASGIFIGRPVVY 293 (349)
Q Consensus 279 ---~~GA~~V~ig~~~l~ 293 (349)
++||+++.+|+.++.
T Consensus 219 ~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 219 DAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred HHHHcCCcEEehhhhhhc
Confidence 899999999999874
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.7e-05 Score=76.63 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=87.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc--ccCC-CCCC-ch-HHHHHHHHHhcCC-cEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQG-LDLG-KM-DEDVKWLQTITKL-PILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~~~~-~~-~~~i~~i~~~~~~-pv~vK~v 212 (349)
.+.+++++++|+|+|+||... |+ +-++|..|. ...+ ...| +.++ .| .+.|+.+|+.++- .|.+|+.
T Consensus 168 ~~AA~rA~~AGFDGVEIH~Ah---GY----Ll~QFLSp~-tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS 239 (391)
T PLN02411 168 RQAALNAIRAGFDGIEIHGAH---GY----LIDQFLKDG-INDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVS 239 (391)
T ss_pred HHHHHHHHHcCCCEEEEcccc---ch----HHHHhCCCc-cCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 345667788999999998643 22 233443331 0111 0111 1122 34 6889999999842 4777775
Q ss_pred cC---------------HHHHHHHHHc------CCCEEEEecCCCC---CCC---Cchh--hHHHHHHHHHHhcCCCcEE
Q 018919 213 LT---------------AEDARIAVQA------GAAGIIVSNHGAR---QLD---YVPA--TIMALEEVVKATQGRIPVF 263 (349)
Q Consensus 213 ~~---------------~~~a~~a~~~------G~d~I~v~~~gg~---~~~---~~~~--~~~~l~~i~~~~~~~ipvi 263 (349)
.. .+.++.+.+. |+|+|.|+..... +.. .++. ......++++.+ ++|||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v--~~pvi 317 (391)
T PLN02411 240 PAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAY--QGTFM 317 (391)
T ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHc--CCCEE
Confidence 31 1123444432 5999999853110 000 1111 113345666666 68999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 264 LDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
+.||| +.+++.++|+.| ||.|.+||+++.
T Consensus 318 ~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 318 CSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred EECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 99999 578999999988 999999999985
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.6e-05 Score=67.60 Aligned_cols=121 Identities=34% Similarity=0.443 Sum_probs=83.8
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL 213 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~ 213 (349)
|.+.....++.++..|++.+.|-.|. +.++.+++.+++||.|-. .
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAadp----------------------------------~LV~~~~~~s~lPICVSa-V 69 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAADP----------------------------------ELVKLAKSLSNLPICVSA-V 69 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecCCH----------------------------------HHHHHHHHhCCCCeEeec-C
Confidence 56667777888888899988764431 456667777788887643 3
Q ss_pred CHHHHHHHHHcCCCEEEEecC------CCC--------------C----------------C------------------
Q 018919 214 TAEDARIAVQAGAAGIIVSNH------GAR--------------Q----------------L------------------ 239 (349)
Q Consensus 214 ~~~~a~~a~~~G~d~I~v~~~------gg~--------------~----------------~------------------ 239 (349)
.++....|.++|||.|-+.|. |.+ . +
T Consensus 70 ep~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiI 149 (242)
T PF04481_consen 70 EPELFVAAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADII 149 (242)
T ss_pred CHHHHHHHHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEE
Confidence 567777777788887777763 221 0 0
Q ss_pred --CC-----------------chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 240 --DY-----------------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 240 --~~-----------------~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+ .-|++....++.+++ ++||++..|+.. -.+=-|+++||++|+||+++-
T Consensus 150 QTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v--~iPVlcASGlS~-vT~PmAiaaGAsGVGVGSavn 218 (242)
T PF04481_consen 150 QTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV--SIPVLCASGLSA-VTAPMAIAAGASGVGVGSAVN 218 (242)
T ss_pred EcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc--CCceEeccCcch-hhHHHHHHcCCcccchhHHhh
Confidence 01 123455555666665 899999999987 455679999999999999874
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=74.76 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.+.|++.+.+.+....+ ...+..++.+.++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASS-EGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 377888999999999997643321 23466789999998877 79999999999999999999999999999998864
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.2e-05 Score=81.50 Aligned_cols=139 Identities=28% Similarity=0.258 Sum_probs=100.5
Q ss_pred HHHHHHHHHh----c-CCcEEEEEecCH---HHHHHHHHcCCCEEEEecC-CCCC---CC----CchhhHHH-HHHHHHH
Q 018919 193 DEDVKWLQTI----T-KLPILVKGVLTA---EDARIAVQAGAAGIIVSNH-GARQ---LD----YVPATIMA-LEEVVKA 255 (349)
Q Consensus 193 ~~~i~~i~~~----~-~~pv~vK~v~~~---~~a~~a~~~G~d~I~v~~~-gg~~---~~----~~~~~~~~-l~~i~~~ 255 (349)
.++++++.-- - ...|.||.+.-. -.|.-.++..||.|.||+| ||+. +. .|. +|+. |.|..+.
T Consensus 1082 IEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGl-PWELGlAEThQt 1160 (2142)
T KOG0399|consen 1082 IEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGL-PWELGLAETHQT 1160 (2142)
T ss_pred HHHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCC-ChhhcchhhhhH
Confidence 5666665422 2 356899998532 2245567788999999998 5542 11 111 1221 3333332
Q ss_pred -----hcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh--------------------------cC-HHHH
Q 018919 256 -----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA--------------------------EG-EKGV 303 (349)
Q Consensus 256 -----~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~--------------------------~G-~~gv 303 (349)
++.++-+-.||+++||.||+-|-.+||+-..+++.-+.+++| .| ++.|
T Consensus 1161 Lv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~Pehv 1240 (2142)
T KOG0399|consen 1161 LVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHV 1240 (2142)
T ss_pred HhhccccccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHHH
Confidence 355788999999999999999999999999999987777654 13 3568
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 304 RRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 304 ~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
.+++-.+.+|++..|..+|++++.|+-+.
T Consensus 1241 VNff~yvaEEvR~imakLGfrtldemvGr 1269 (2142)
T KOG0399|consen 1241 VNFFFYVAEEVRGIMAKLGFRTLDEMVGR 1269 (2142)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHHHHhcc
Confidence 89999999999999999999999999644
|
|
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.7e-05 Score=71.10 Aligned_cols=93 Identities=24% Similarity=0.300 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCcEEEEEe-----cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEE
Q 018919 193 DEDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 263 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-----~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 263 (349)
.++|+.+++..+-++.+|.+ ++.++ .+.+.++|+|+|..|... ..+..+.+.+.-+++.+++++-|=
T Consensus 112 ~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf----~~~gAT~edv~lM~~~vg~~vgvK 187 (228)
T COG0274 112 EREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGF----SAGGATVEDVKLMKETVGGRVGVK 187 (228)
T ss_pred HHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhccCceee
Confidence 57799999988766778886 23332 456889999999987531 244556777777777777789999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 264 LDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
++||||+.+|+.+++.+||.-++..+
T Consensus 188 aSGGIrt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 188 ASGGIRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred ccCCcCCHHHHHHHHHHhHHHhcccc
Confidence 99999999999999999976654443
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00018 Score=64.87 Aligned_cols=149 Identities=18% Similarity=0.162 Sum_probs=102.7
Q ss_pred HHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHH
Q 018919 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE 194 (349)
Q Consensus 115 e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~ 194 (349)
.++.+..+++..+|++. .|.+.+.+.++.+.+.+ +.+.+-+.+.. .-.+
T Consensus 44 ~~i~~~~~~~v~~qv~~-~~~e~~i~~a~~l~~~~-~~~~iKIP~T~-----------------------------~gl~ 92 (211)
T cd00956 44 KEICEIIDGPVSAQVVS-TDAEGMVAEARKLASLG-GNVVVKIPVTE-----------------------------DGLK 92 (211)
T ss_pred HHHHHhcCCCEEEEEEe-CCHHHHHHHHHHHHHhC-CCEEEEEcCcH-----------------------------hHHH
Confidence 34444445678889875 67777777777776652 23444442210 0046
Q ss_pred HHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC-C-CcEEEecCCCCHH
Q 018919 195 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-R-IPVFLDGGVRRGT 272 (349)
Q Consensus 195 ~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~-~-ipvia~GGI~~~~ 272 (349)
.++.+++. ++++.+..+.+.+.|..|.++|+++|.. +-||--+.|...+..+.++.+.+.. + -.-+...|++++.
T Consensus 93 ai~~L~~~-gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP--~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ 169 (211)
T cd00956 93 AIKKLSEE-GIKTNVTAIFSAAQALLAAKAGATYVSP--FVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQ 169 (211)
T ss_pred HHHHHHHc-CCceeeEEecCHHHHHHHHHcCCCEEEE--ecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHH
Confidence 67777765 8999999999999999999999999544 4454334444556666666665532 2 2234445699999
Q ss_pred HHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 273 DVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
++..++.+||+.|-+.-.++..+..
T Consensus 170 ei~~a~~~Gad~vTv~~~vl~~l~~ 194 (211)
T cd00956 170 HVIEAALAGADAITLPPDVLEQLLK 194 (211)
T ss_pred HHHHHHHcCCCEEEeCHHHHHHHhc
Confidence 9999999999999999998876643
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.5e-05 Score=74.03 Aligned_cols=77 Identities=25% Similarity=0.265 Sum_probs=64.3
Q ss_pred CH-HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 214 TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 214 ~~-~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
++ +.|+...+.|+|.+.+.+.-+- .......++.+.++++.+ ++||+++|||++.+|+.+++.+||+.|++|++++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 44 6788889999999999764321 124456788899998887 7999999999999999999999999999999886
Q ss_pred H
Q 018919 293 Y 293 (349)
Q Consensus 293 ~ 293 (349)
.
T Consensus 108 ~ 108 (254)
T TIGR00735 108 K 108 (254)
T ss_pred h
Confidence 4
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.2e-06 Score=79.83 Aligned_cols=97 Identities=19% Similarity=0.265 Sum_probs=69.9
Q ss_pred CCch-HHHHHHHHHhcCCcEEEEEe--cCHHHHHHHHHcCCCEEEEecCCCCCCCCchh-hHHHHHHHHHHhcCCCcEEE
Q 018919 189 LGKM-DEDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFL 264 (349)
Q Consensus 189 ~~~~-~~~i~~i~~~~~~pv~vK~v--~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia 264 (349)
++++ .+.++.+++. ++++.++.. ...+.++.+.++|+|.|+++++...+.+.+.. .+..+.++.+.. ++|||+
T Consensus 116 ~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa 192 (368)
T PRK08649 116 KPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV 192 (368)
T ss_pred CHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE
Confidence 5666 6778998885 555544442 23477899999999999995322122233322 345556666655 799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
|+|.+.+++.+++.+|||+|++|+
T Consensus 193 -G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 193 -GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred -eCCCCHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999999996
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.8e-05 Score=71.89 Aligned_cols=123 Identities=20% Similarity=0.268 Sum_probs=87.1
Q ss_pred HHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHH
Q 018919 139 AQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~ 217 (349)
.+.+++.++.|++.+ .|++|.. ++...+.++++++ +++||-+.+-...++
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdgg----------------------------~~~n~~~i~~i~~-~~~~vqvGGGIR~e~ 96 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGAD----------------------------DASLAAALEALRA-YPGGLQVGGGVNSEN 96 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCCC----------------------------CcccHHHHHHHHh-CCCCEEEeCCccHHH
Confidence 567888899999998 5566541 1111467888887 778887776433488
Q ss_pred HHHHHHcCCCEEEEec----C---------------C--------------C--C-------C-----------------
Q 018919 218 ARIAVQAGAAGIIVSN----H---------------G--------------A--R-------Q----------------- 238 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~----~---------------g--------------g--~-------~----------------- 238 (349)
++.+.++||+.|++.. . | | + .
T Consensus 97 i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g 176 (262)
T PLN02446 97 AMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAY 176 (262)
T ss_pred HHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhC
Confidence 8888888888888752 0 1 1 0 0
Q ss_pred ----------CCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh--CCCEEEEchHHH
Q 018919 239 ----------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL--GASGIFIGRPVV 292 (349)
Q Consensus 239 ----------~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~--GA~~V~ig~~~l 292 (349)
.|+ .-+.++.+.++.+.+ ++|||++|||++.+|+.+...+ |..+|.+|++++
T Consensus 177 ~~eii~TdI~rDGtl~G~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~ 242 (262)
T PLN02446 177 CDEFLVHGVDVEGKRLGIDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALD 242 (262)
T ss_pred CCEEEEEEEcCCCcccCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHH
Confidence 001 123456666666665 7999999999999999998887 578999999984
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.7e-05 Score=69.69 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCH
Q 018919 138 VAQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTA 215 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~ 215 (349)
..+.++...+.|++.+ .+++|... + .+...+.++++.+....|+.+.+ +.+.
T Consensus 32 P~~~a~~~~~~ga~~lhivDLd~a~-~-------------------------~~~n~~~i~~i~~~~~~~v~vGGGIrs~ 85 (232)
T PRK13586 32 PIEIASKLYNEGYTRIHVVDLDAAE-G-------------------------VGNNEMYIKEISKIGFDWIQVGGGIRDI 85 (232)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCcC-C-------------------------CcchHHHHHHHHhhCCCCEEEeCCcCCH
Confidence 3467777888999987 55665421 0 01114678888774445888765 6889
Q ss_pred HHHHHHHHcCCCEEEEecC---------------CC-C---CCC------------------------------------
Q 018919 216 EDARIAVQAGAAGIIVSNH---------------GA-R---QLD------------------------------------ 240 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~---------------gg-~---~~~------------------------------------ 240 (349)
++++.+.+.|++.|++... |+ + .+|
T Consensus 86 e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~ 165 (232)
T PRK13586 86 EKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIF 165 (232)
T ss_pred HHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEE
Confidence 9999999999999887521 11 0 000
Q ss_pred ------C--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 241 ------Y--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 241 ------~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+ .-+.++.+..+.+. ..|++++|||++.+|+.++..+|+++|.+|++++.
T Consensus 166 tdI~~dGt~~G~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 166 TYISNEGTTKGIDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred ecccccccCcCcCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 0 01233444444332 34699999999999999999999999999999874
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.5e-05 Score=66.29 Aligned_cols=157 Identities=17% Similarity=0.112 Sum_probs=103.6
Q ss_pred ChhhHHHHHHHHHcCCeEE-ecCCCCCCH---HHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 87 PEGEYATARAASAAGTIMT-LSSWSTSSV---EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~-~~~~~~~~~---e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
++.-..+++++.+.|+..+ ++-.++..+ +++++..|+ ..+-.-. =.+.+.++++.++|++.++ +|
T Consensus 15 ~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~-~~vGAGT----Vl~~e~a~~ai~aGA~Fiv----SP-- 83 (201)
T PRK06015 15 VEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEE-AIVGAGT----ILNAKQFEDAAKAGSRFIV----SP-- 83 (201)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCC-CEEeeEe----CcCHHHHHHHHHcCCCEEE----CC--
Confidence 3334589999999999866 333333333 344444442 1111111 1234567888999999875 22
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY 241 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~ 241 (349)
.+ -+.+++.+ +.++|++- ++.|+.++..|.++|++.|.++-.+ .-+
T Consensus 84 ----------------------------~~~~~vi~~a~-~~~i~~iP-G~~TptEi~~A~~~Ga~~vK~FPa~---~~G 130 (201)
T PRK06015 84 ----------------------------GTTQELLAAAN-DSDVPLLP-GAATPSEVMALREEGYTVLKFFPAE---QAG 130 (201)
T ss_pred ----------------------------CCCHHHHHHHH-HcCCCEeC-CCCCHHHHHHHHHCCCCEEEECCch---hhC
Confidence 12 24455544 56898874 7899999999999999999996421 112
Q ss_pred chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 242 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 242 ~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
|+ ..++.++.-+ .+++++.+|||.. +++.++|++|+.++..|+.+.
T Consensus 131 G~---~yikal~~pl-p~~~l~ptGGV~~-~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 131 GA---AFLKALSSPL-AGTFFCPTGGISL-KNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred CH---HHHHHHHhhC-CCCcEEecCCCCH-HHHHHHHhCCCeEEEEchhhC
Confidence 33 3444454545 3799999999977 799999999988777777654
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-05 Score=74.00 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc---CCCcEEEecC
Q 018919 193 DEDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGG 267 (349)
Q Consensus 193 ~~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GG 267 (349)
.+.++++|+..+ .+|.+ .+.+.|+++.++++|+|.|.+.|- +.+.+.++++..+ .++.+.++||
T Consensus 169 ~~~v~~~k~~~p~~~~I~V-Ev~tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~~ieAsGg 237 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEI-ECESLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHVLLEASGN 237 (273)
T ss_pred HHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECC
Confidence 356888888765 44554 678999999999999999988652 3455666666543 3677999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 268 VRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 268 I~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
| +++.+.++..+|+|.+.+|+++.
T Consensus 238 I-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 238 I-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhc
Confidence 9 99999999999999999999775
|
|
| >PRK01362 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00048 Score=62.14 Aligned_cols=146 Identities=18% Similarity=0.121 Sum_probs=103.3
Q ss_pred HHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHH
Q 018919 116 EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDED 195 (349)
Q Consensus 116 ~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (349)
++.+..+++..+|+.. .|.+.+.+.++++.+.+ +.+.+-+.+.. +| .+.
T Consensus 45 ~i~~~i~g~vs~qv~~-~d~~~m~~~a~~l~~~~-~~i~iKIP~T~---------------~G--------------~~a 93 (214)
T PRK01362 45 EICSIVDGPVSAEVIA-LDAEGMIKEGRELAKIA-PNVVVKIPMTP---------------EG--------------LKA 93 (214)
T ss_pred HHHHhcCCCEEEEEee-CCHHHHHHHHHHHHHhC-CCEEEEeCCCH---------------HH--------------HHH
Confidence 3444445678889874 67777777777777765 34555553321 00 355
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc---CCCcEEEecCCCCHH
Q 018919 196 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGT 272 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~ 272 (349)
++.+++. ++++-+-.+.+.+.+..|.++|+++|.. .=||--+.+...+..+.++.+.+. .+..|++ ..+|+..
T Consensus 94 ~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~~~ 169 (214)
T PRK01362 94 VKALSKE-GIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRHPM 169 (214)
T ss_pred HHHHHHC-CCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCCHH
Confidence 7777664 8999998899999999999999998876 334433445555666666666552 2454554 4599999
Q ss_pred HHHHHHHhCCCEEEEchHHHHHHh
Q 018919 273 DVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
++.+++.+|||.+-+.-.++..+.
T Consensus 170 ~v~~~~~~G~d~iTi~~~vl~~l~ 193 (214)
T PRK01362 170 HVLEAALAGADIATIPYKVIKQLF 193 (214)
T ss_pred HHHHHHHcCCCEEecCHHHHHHHH
Confidence 999999999999999998887765
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00014 Score=66.04 Aligned_cols=96 Identities=26% Similarity=0.333 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCC--CC--CCCC-chhhHHH-HHHHHHHhcCCCcEEEecCC
Q 018919 195 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--AR--QLDY-VPATIMA-LEEVVKATQGRIPVFLDGGV 268 (349)
Q Consensus 195 ~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~g--g~--~~~~-~~~~~~~-l~~i~~~~~~~ipvia~GGI 268 (349)
.++..++ .++.+++ .+.+.++++.+.+.|.|.|.+-+.+ |+ .... .+...+. +..+++. ..++||++.|||
T Consensus 106 ~v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~-~~~~pvi~GggI 182 (223)
T PRK04302 106 VVERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV-NPDVKVLCGAGI 182 (223)
T ss_pred HHHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc-cCCCEEEEECCC
Confidence 3555544 4765554 4567888888999999988764321 21 1111 1222222 2223322 236899999999
Q ss_pred CCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 269 RRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
++++++..+++.|||+|.+|++++.
T Consensus 183 ~~~e~~~~~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 183 STGEDVKAALELGADGVLLASGVVK 207 (223)
T ss_pred CCHHHHHHHHcCCCCEEEEehHHhC
Confidence 9999999999999999999999985
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00012 Score=65.48 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=36.2
Q ss_pred HHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 247 MALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 247 ~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.+.++++... .++|+++.|||+. +++.+++..|||+|.+||+++.
T Consensus 151 ~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 151 EKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 44445544431 1489999999996 9999999999999999999973
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0013 Score=61.97 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=73.6
Q ss_pred cCHHHHHHHH-HcCCCEEEEe--c-CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec--CCCCHHHHHHHHHhCCCEEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~--~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G--GI~~~~dv~kal~~GA~~V~ 286 (349)
.++++++.+. +.|+|++-++ + ||-. .+.-+-.++.|.++++.+ ++|+++-| ||.. +++.+++..|++.|-
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~-~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~~-e~~~~~i~~G~~kin 228 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMY-NGDPNLRFDRLQEINDVV--HIPLVLHGGSGISP-EDFKKCIQHGIRKIN 228 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCC-CCCCccCHHHHHHHHHhc--CCCEEEECCCCCCH-HHHHHHHHcCCcEEE
Confidence 4788898887 4699999994 3 4422 112223688999999887 79999999 8765 889999999999999
Q ss_pred EchHHHHHHhh-------cCH-----HHHHHHHHHHHHHHHHHHHHcCC
Q 018919 287 IGRPVVYSLAA-------EGE-----KGVRRVLEMLREEFELAMALSGC 323 (349)
Q Consensus 287 ig~~~l~~~~~-------~G~-----~gv~~~l~~l~~el~~~m~~~G~ 323 (349)
+.|.+..+... ... .-.....+.+++..+..|..+|.
T Consensus 229 v~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs 277 (281)
T PRK06806 229 VATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGS 277 (281)
T ss_pred EhHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99988754211 000 11223334555566666666664
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00053 Score=61.57 Aligned_cols=199 Identities=19% Similarity=0.197 Sum_probs=113.4
Q ss_pred CcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCC-----CCCHHHHHhhCCCceEEEEee---
Q 018919 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS-----TSSVEEVASTGPGIRFFQLYV--- 131 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~-----~~~~e~i~~~~~~~~~~Ql~~--- 131 (349)
|...+|.|++|.+-+++..= ...++ .-+.++.+..|.-.+.-... ...-+.+.+... +.-+.+-+
T Consensus 5 ~d~l~i~g~~f~SRLllGTg---ky~s~---~~~~~av~asg~~ivTvAlRR~~~~~~~~~~~l~~l~-~~~~~~LPNTa 77 (262)
T COG2022 5 DDMLTIAGKTFDSRLLLGTG---KYPSP---AVLAEAVRASGSEIVTVALRRVNATRPGGDGILDLLI-PLGVTLLPNTA 77 (262)
T ss_pred ccceeecCeeeeeeEEEecC---CCCCH---HHHHHHHHhcCCceEEEEEEeecccCCCcchHHHHhh-hcCcEeCCCcc
Confidence 34577889999999988652 22223 25777778888775431111 011122222111 11122222
Q ss_pred -cCChhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcE
Q 018919 132 -YKDRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPI 207 (349)
Q Consensus 132 -~~~~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv 207 (349)
.++.+.-...++.++++ +-++|-+.+=.. +.+- -|+..+.++...... +.-|
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d----------~~tL--------------lPD~~etl~Aae~Lv~eGF~V 133 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGD----------EKTL--------------LPDPIETLKAAEQLVKEGFVV 133 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecC----------Cccc--------------CCChHHHHHHHHHHHhCCCEE
Confidence 23344444445555554 566664433110 0111 122234444333222 3333
Q ss_pred EEEEecCHHHHHHHHHcCCCEEEEecCC-CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 208 LVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 208 ~vK~v~~~~~a~~a~~~G~d~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
..-...++-.|+++.++||.+|.=-+.. |+ .-|+-+...|.-+.+.. ++|||+|-||.+++|+..++++|+|+|+
T Consensus 134 lPY~~dD~v~arrLee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL 209 (262)
T COG2022 134 LPYTTDDPVLARRLEEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVL 209 (262)
T ss_pred eeccCCCHHHHHHHHhcCceEeccccccccC--CcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceee
Confidence 3222356788999999999888532110 11 12444566777777776 8999999999999999999999999999
Q ss_pred EchHHHH
Q 018919 287 IGRPVVY 293 (349)
Q Consensus 287 ig~~~l~ 293 (349)
+-+++-.
T Consensus 210 ~NTAiA~ 216 (262)
T COG2022 210 LNTAIAR 216 (262)
T ss_pred hhhHhhc
Confidence 9998754
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00028 Score=64.08 Aligned_cols=150 Identities=22% Similarity=0.262 Sum_probs=97.8
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh-cCCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI-TKLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~-~~~pv~vK 210 (349)
.|.....+.++++++.|++.+-+++=- ..| +| +-.| .+.++++|+. +++|+=+-
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDimD-----------G~F-VP------------N~tfg~~~i~~lr~~~~~~~~dvH 68 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVMD-----------NHY-VP------------NLTIGPMVCQALRKHGITAPIDVH 68 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeccc-----------Ccc-CC------------CcccCHHHHHHHHhhCCCCCEEEE
Confidence 466677889999999999987554411 011 12 2234 6789999988 58887665
Q ss_pred E-ecCHH-HHHHHHHcCCCEEEEecC---------------CC---------CC----------CC-----------Cc-
Q 018919 211 G-VLTAE-DARIAVQAGAAGIIVSNH---------------GA---------RQ----------LD-----------YV- 242 (349)
Q Consensus 211 ~-v~~~~-~a~~a~~~G~d~I~v~~~---------------gg---------~~----------~~-----------~~- 242 (349)
. +.+++ .+....++|+|.|+++-. |- +. .| +|
T Consensus 69 LMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ 148 (223)
T PRK08745 69 LMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQ 148 (223)
T ss_pred eccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCc
Confidence 5 34564 467888999999998621 11 00 01 22
Q ss_pred ---hhhHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHH
Q 018919 243 ---PATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~e 313 (349)
+..++-+.++++.... ++.|-+||||. .+.+.++.++|||.+.+||+++ . .+...+.++.+++.
T Consensus 149 ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF-~-----~~d~~~~~~~lr~~ 218 (223)
T PRK08745 149 AFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIF-N-----APDYAQVIAQMRAA 218 (223)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhh-C-----CCCHHHHHHHHHHH
Confidence 2344555555554321 47799999998 4788888899999999999854 2 22244455555544
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00026 Score=64.65 Aligned_cols=152 Identities=19% Similarity=0.181 Sum_probs=99.8
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK 210 (349)
.|+....+.++++++.|++.+-+++--. .| +| +-.+ .+.++++|+.+ ++|+-+|
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg-----------~f-vp------------n~~~G~~~v~~lr~~~~~~~lDvH 71 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDG-----------HF-VP------------NLSFGPPVVKSLRKHLPNTFLDCH 71 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccC-----------cc-CC------------CcCcCHHHHHHHHhcCCCCCEEEE
Confidence 4667778899999999999875544110 11 12 1123 57899999887 8999999
Q ss_pred Ee-cCHH-HHHHHHHcCCCEEEEecCCCCC--------------------------------C-----C-----------
Q 018919 211 GV-LTAE-DARIAVQAGAAGIIVSNHGARQ--------------------------------L-----D----------- 240 (349)
Q Consensus 211 ~v-~~~~-~a~~a~~~G~d~I~v~~~gg~~--------------------------------~-----~----------- 240 (349)
.- .+++ .++.+.++|+|.|++...++.. + |
T Consensus 72 Lm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~ 151 (228)
T PTZ00170 72 LMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGF 151 (228)
T ss_pred ECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCC
Confidence 86 5564 4678899999999986322210 0 0
Q ss_pred Cc----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018919 241 YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 241 ~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~ 316 (349)
.| +..++-+.++++.. ....|.++|||+. +.+.++..+|||.+.+||++.. .+...+.++.++++++.
T Consensus 152 ~gq~~~~~~~~ki~~~~~~~-~~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~------a~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 152 GGQSFMHDMMPKVRELRKRY-PHLNIQVDGGINL-ETIDIAADAGANVIVAGSSIFK------AKDRKQAIELLRESVQK 223 (228)
T ss_pred CCcEecHHHHHHHHHHHHhc-ccCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHhC------CCCHHHHHHHHHHHHHH
Confidence 01 11233444444433 2478999999987 6888889999999999999652 12234556666666554
|
|
| >PRK12653 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00064 Score=61.61 Aligned_cols=172 Identities=14% Similarity=0.107 Sum_probs=113.1
Q ss_pred hHHHHHHHHHcCCeEEecCCCC------C----CHHHHHhhCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEec
Q 018919 90 EYATARAASAAGTIMTLSSWST------S----SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~~------~----~~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~ 157 (349)
+..-.+.+.+.|..-.++|.-+ . .+.++++..+ ++..+|+.. .|.+.+.+.++++.+.+-. +.|-+
T Consensus 9 ~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~Qv~~-~d~e~mi~ea~~l~~~~~n-i~IKI 86 (220)
T PRK12653 9 DVVAVKALSRIFPLAGVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQVMA-TTAEGMVNDARKLRSIIAD-IVVKV 86 (220)
T ss_pred CHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCcEEEEEec-CCHHHHHHHHHHHHHhCCC-EEEEe
Confidence 4455566666666655655411 1 2344444443 467789875 6777777777777776543 55555
Q ss_pred CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC
Q 018919 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR 237 (349)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~ 237 (349)
.+... | .+.++.+++. ++++-+-.+.+.+.|..|..+||++|... =||
T Consensus 87 P~T~~---------------G--------------l~A~~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIspy--vgR 134 (220)
T PRK12653 87 PVTAE---------------G--------------LAAIKMLKAE-GIPTLGTAVYGAAQGLLSALAGAEYVAPY--VNR 134 (220)
T ss_pred CCCHH---------------H--------------HHHHHHHHHc-CCCeeEEEecCHHHHHHHHhcCCcEEEee--cCh
Confidence 33210 0 3557777664 89999989999999999999999998653 233
Q ss_pred CCCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 238 QLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 238 ~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
-.+.|...+..+.++.+.+ +.+..|++.+ +++..++.+++.+|||.+-+.-..+..+.
T Consensus 135 ~~~~g~dg~~~i~~i~~~~~~~~~~tkILaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~l~ 195 (220)
T PRK12653 135 IDAQGGSGIQTVTDLQQLLKMHAPQAKVLAAS-FKTPRQALDCLLAGCESITLPLDVAQQMI 195 (220)
T ss_pred HhhcCCChHHHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHcCCCEEECCHHHHHHHH
Confidence 2223333344455554443 2245555555 99999999999999999999999988764
|
|
| >PRK12655 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00061 Score=61.72 Aligned_cols=186 Identities=16% Similarity=0.104 Sum_probs=118.0
Q ss_pred hHHHHHHHHHcCCeEEecCCCC------C----CHHHHHhhCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEec
Q 018919 90 EYATARAASAAGTIMTLSSWST------S----SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~~------~----~~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~ 157 (349)
+..-.+.+.+.|..-.++|.-+ . .++++++..+ ++..+|++. .|.+.+.+.++++.+.+-. +.|-+
T Consensus 9 ~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~qv~~-~d~e~mi~eA~~l~~~~~n-v~IKI 86 (220)
T PRK12655 9 NVAEVERLARIFPIAGVTTNPSIIAASKESIWEVLPRLQKAIGGEGILFAQTMS-RDAQGMVEEAKRLRNAIPG-IVVKI 86 (220)
T ss_pred CHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCCEEEEEee-CCHHHHHHHHHHHHHhCCC-EEEEe
Confidence 4445555666665555554411 1 2344555443 567789875 5777777777777766533 55555
Q ss_pred CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC
Q 018919 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR 237 (349)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~ 237 (349)
.+... | .+.++.+++. ++++-+-.+.+.+.|..|..+|+++|.. .=||
T Consensus 87 P~T~~---------------G--------------l~Ai~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp--yvgR 134 (220)
T PRK12655 87 PVTAE---------------G--------------LAAIKKLKKE-GIPTLGTAVYSAAQGLLAALAGAKYVAP--YVNR 134 (220)
T ss_pred CCCHH---------------H--------------HHHHHHHHHC-CCceeEeEecCHHHHHHHHHcCCeEEEe--ecch
Confidence 33210 0 3567777664 8999998899999999999999998765 3233
Q ss_pred CCCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcC--HHHHHHHHHHH
Q 018919 238 QLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 310 (349)
Q Consensus 238 ~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G--~~gv~~~l~~l 310 (349)
--+.|......+.++.+.+ +.+..|++.+ +++..++.+++.+||+.+-+.-..+..+...- ..+++.+.+.|
T Consensus 135 ~~~~g~dg~~~i~~~~~~~~~~~~~tkILaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw 211 (220)
T PRK12655 135 VDAQGGDGIRMVQELQTLLEMHAPESMVLAAS-FKTPRQALDCLLAGCQSITLPLDVAQQMLNTPAVESAIEKFEQDW 211 (220)
T ss_pred HhHcCCCHHHHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 2223333345555555444 2245566555 99999999999999999999999887765321 24454444443
|
|
| >PRK12656 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00071 Score=61.35 Aligned_cols=172 Identities=16% Similarity=0.119 Sum_probs=112.5
Q ss_pred hHHHHHHHHHcCCeEEecCCC-------CCCH----HHHHhhCC--CceEEEEeecCChhHHHHHHHHHHH-cCCCEEEE
Q 018919 90 EYATARAASAAGTIMTLSSWS-------TSSV----EEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAER-AGFKAIAL 155 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~-------~~~~----e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~-~G~~~i~i 155 (349)
|..-.+.+.+.|..-.++|.- .... +++++..+ .+..+|++. .+.+.+.+.++++.+ .| +-+.+
T Consensus 9 d~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~~i~~~i~~~~~vs~ev~~-~~~~~mi~eA~~l~~~~~-~nv~V 86 (222)
T PRK12656 9 NLEAIKKWHEILPLAGVTSNPSIAKKEGDIDFFERIREVREIIGDEASIHVQVVA-QDYEGILKDAHEIRRQCG-DDVYI 86 (222)
T ss_pred CHHHHHHHHhcCCcceEeCCHHHHHhcCCCCHHHHHHHHHHHhCCCCcEEEEEEE-CCHHHHHHHHHHHHHHhC-CCEEE
Confidence 444555566666555555441 1122 33444443 468899875 677777777777653 45 33555
Q ss_pred ecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCC
Q 018919 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG 235 (349)
Q Consensus 156 ~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~g 235 (349)
-+.+... | .+.++.+++. ++++-+-.+.+++.+..|.++||++|.. .=
T Consensus 87 KIP~T~~---------------G--------------l~Ai~~L~~~-Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsP--yv 134 (222)
T PRK12656 87 KVPVTPA---------------G--------------LAAIKTLKAE-GYHITATAIYTVFQGLLAIEAGADYLAP--YY 134 (222)
T ss_pred EeCCCHH---------------H--------------HHHHHHHHHC-CCceEEeeeCCHHHHHHHHHCCCCEEec--cc
Confidence 5533210 0 3567777654 8999998899999999999999998765 33
Q ss_pred CCCCCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 236 ARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 236 g~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
||--+.|......+.++.+.+ +.+..|++.+ +|+..++.+++.+||+.+-+.-..+..+.
T Consensus 135 gRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r~~~~v~~a~~~G~d~vTvp~~vl~~l~ 197 (222)
T PRK12656 135 NRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FKNVAQVNKAFALGAQAVTAGPDVFEAAF 197 (222)
T ss_pred chhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cCCHHHHHHHHHcCCCEEecCHHHHHHHh
Confidence 442233333344555554443 3356667666 99999999999999999999998887654
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00021 Score=64.08 Aligned_cols=151 Identities=24% Similarity=0.284 Sum_probs=100.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
.|.....+.+++++++|++.+-+++=- ..| +| +-.+ -..++++|+.++.|+=+-.
T Consensus 13 aD~~~l~~el~~~~~agad~iH~DVMD-----------ghF-VP------------NiTfGp~~v~~l~~~t~~p~DvHL 68 (220)
T COG0036 13 ADFARLGEELKALEAAGADLIHIDVMD-----------GHF-VP------------NITFGPPVVKALRKITDLPLDVHL 68 (220)
T ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccC-----------CCc-CC------------CcccCHHHHHHHhhcCCCceEEEE
Confidence 566777889999999999987655411 111 12 2234 5789999998889987766
Q ss_pred -ecCHH-HHHHHHHcCCCEEEEecC---------------CC---------CC----------CC-----------Cc--
Q 018919 212 -VLTAE-DARIAVQAGAAGIIVSNH---------------GA---------RQ----------LD-----------YV-- 242 (349)
Q Consensus 212 -v~~~~-~a~~a~~~G~d~I~v~~~---------------gg---------~~----------~~-----------~~-- 242 (349)
+.+++ .+....++|||.|++.-. |- +. .| +|
T Consensus 69 MV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~ 148 (220)
T COG0036 69 MVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQK 148 (220)
T ss_pred ecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccc
Confidence 35554 478899999999999621 10 10 01 23
Q ss_pred --hhhHHHHHHHHHHhcC--CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 243 --PATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 243 --~~~~~~l~~i~~~~~~--~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
+..++-++++++.... ++-|-+||||.. +.+.++.++|||.+..||+++. .......++.++.++
T Consensus 149 Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~-~t~~~~~~AGad~~VaGSalF~------~~d~~~~i~~~~~~~ 217 (220)
T COG0036 149 FIPEVLEKIRELRAMIDERLDILIEVDGGINL-ETIKQLAAAGADVFVAGSALFG------ADDYKATIRELRGEL 217 (220)
T ss_pred cCHHHHHHHHHHHHHhcccCCeEEEEeCCcCH-HHHHHHHHcCCCEEEEEEEEeC------CccHHHHHHHHHHHh
Confidence 3455666666666542 578999999976 7777777899999999995432 222444555555543
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.6e-05 Score=67.23 Aligned_cols=158 Identities=21% Similarity=0.250 Sum_probs=99.3
Q ss_pred ChhhHHHHHHHHHcCCeEE-ecCCCCCCHH---HHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 87 PEGEYATARAASAAGTIMT-LSSWSTSSVE---EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~-~~~~~~~~~e---~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
++.-..+++++.+.|+..+ ++-.+...++ .+++..|+. .+-.- . =.+.+.++++.++|++.+. +|
T Consensus 19 ~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~-~vGAG---T-V~~~e~a~~a~~aGA~Fiv----SP-- 87 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDL-LVGAG---T-VLTAEQAEAAIAAGAQFIV----SP-- 87 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTS-EEEEE---S---SHHHHHHHHHHT-SEEE----ES--
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCC-eeEEE---e-ccCHHHHHHHHHcCCCEEE----CC--
Confidence 3334689999999998876 3333333333 334444532 12111 1 1234678889999999875 12
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY 241 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~ 241 (349)
.+ -+.++..+ ..++|++- ++.|+.++..|.++|++.|.+.-.+- -+
T Consensus 88 ----------------------------~~~~~v~~~~~-~~~i~~iP-G~~TptEi~~A~~~G~~~vK~FPA~~---~G 134 (196)
T PF01081_consen 88 ----------------------------GFDPEVIEYAR-EYGIPYIP-GVMTPTEIMQALEAGADIVKLFPAGA---LG 134 (196)
T ss_dssp ----------------------------S--HHHHHHHH-HHTSEEEE-EESSHHHHHHHHHTT-SEEEETTTTT---TT
T ss_pred ----------------------------CCCHHHHHHHH-HcCCcccC-CcCCHHHHHHHHHCCCCEEEEecchh---cC
Confidence 12 24455555 45898874 78999999999999999999964321 12
Q ss_pred chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 242 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 242 ~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
|+ ..++.++.-+ .+++++.+|||.. +++..++.+|+.+|++|+.+..
T Consensus 135 G~---~~ik~l~~p~-p~~~~~ptGGV~~-~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 135 GP---SYIKALRGPF-PDLPFMPTGGVNP-DNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp HH---HHHHHHHTTT-TT-EEEEBSS--T-TTHHHHHTSTTBSEEEESGGGS
T ss_pred cH---HHHHHHhccC-CCCeEEEcCCCCH-HHHHHHHhCCCEEEEECchhcC
Confidence 34 3444444444 3799999999987 7999999999999999997764
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.7e-05 Score=77.01 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCCEEEEchHHHH
Q 018919 246 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVY 293 (349)
Q Consensus 246 ~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~~V~ig~~~l~ 293 (349)
++.+..+.+.+ ++|||++||+.+.+|+.+++. .||+++..++.|.+
T Consensus 471 ~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~ 517 (538)
T PLN02617 471 IELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHR 517 (538)
T ss_pred HHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeecc
Confidence 44555555555 799999999999999999998 68999999998876
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.7e-05 Score=71.42 Aligned_cols=127 Identities=24% Similarity=0.311 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh---cCCcEEEEEecC
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI---TKLPILVKGVLT 214 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~---~~~pv~vK~v~~ 214 (349)
...++.+.+.|++.+.+.++.... . +. +.+. .+.++++++. +++|+++-....
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~-------~-----~~-----------~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGAL-------G-----SG-----------NEDEVIEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHH-------H-----TT-----------HHHHHHHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHHHcCCceeeeecccccc-------c-----cc-----------cHHHHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 466788889999999877753100 0 00 0111 3445555444 578888775544
Q ss_pred HHH-------------HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCc----EEEecCC------CCH
Q 018919 215 AED-------------ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP----VFLDGGV------RRG 271 (349)
Q Consensus 215 ~~~-------------a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip----via~GGI------~~~ 271 (349)
.+. ++.+.++|+|.|..+.. +. ........+.+.++.+.. .+| |.++||| ++.
T Consensus 136 ~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg-~~-~~~t~~~~~~~~~~~~~~--~~p~~~~Vk~sGGi~~~~~~~~l 211 (236)
T PF01791_consen 136 GEEVADEKKPDLIARAARIAAELGADFVKTSTG-KP-VGATPEDVELMRKAVEAA--PVPGKVGVKASGGIDAEDFLRTL 211 (236)
T ss_dssp HHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S-SS-SCSHHHHHHHHHHHHHTH--SSTTTSEEEEESSSSHHHHHHSH
T ss_pred chhhcccccHHHHHHHHHHHHHhCCCEEEecCC-cc-ccccHHHHHHHHHHHHhc--CCCcceEEEEeCCCChHHHHHHH
Confidence 333 57789999999999743 21 122233445555555544 566 9999999 999
Q ss_pred HHHHHHHHhCC--CEEEEchHHH
Q 018919 272 TDVFKALALGA--SGIFIGRPVV 292 (349)
Q Consensus 272 ~dv~kal~~GA--~~V~ig~~~l 292 (349)
+++.+++.+|| .++..||.+.
T Consensus 212 ~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 212 EDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp HHHHHHHHTTHSEEEEEEHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHH
Confidence 99999999999 8888888764
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00014 Score=67.56 Aligned_cols=118 Identities=23% Similarity=0.316 Sum_probs=78.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHH---HHHHHHhcCCcEEEEEe----
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDED---VKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~---i~~i~~~~~~pv~vK~v---- 212 (349)
..++.+.+.|++++.+....-..+ +.+..+. +.++.+.+++|+++...
T Consensus 94 ~~v~~al~~Ga~~v~~~~~~g~~~-------------------------~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gv 148 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVNVGSDT-------------------------EWEQIRDLGMIAEICDDWGVPLLAMMYPRGP 148 (258)
T ss_pred eeHHHHHHCCCCEEEEEEecCCch-------------------------HHHHHHHHHHHHHHHHHcCCCEEEEEeccCc
Confidence 457788899999988765421000 0111233 44444557899887432
Q ss_pred ----cCH---HH-HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCC--CHHHHH----HHH
Q 018919 213 ----LTA---ED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR--RGTDVF----KAL 278 (349)
Q Consensus 213 ----~~~---~~-a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~--~~~dv~----kal 278 (349)
.+. .. ++.+.++|+|+|.++.. ...+.+.++.+.. ++||++.|||+ +.+++. +++
T Consensus 149 h~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~ 217 (258)
T TIGR01949 149 HIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAM 217 (258)
T ss_pred ccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 122 22 57788999999998521 1356677776655 79999999999 655554 455
Q ss_pred HhCCCEEEEchHHHH
Q 018919 279 ALGASGIFIGRPVVY 293 (349)
Q Consensus 279 ~~GA~~V~ig~~~l~ 293 (349)
++||+++.+|+.++.
T Consensus 218 ~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 218 EAGAAGVAVGRNIFQ 232 (258)
T ss_pred HcCCcEEehhhHhhc
Confidence 899999999998874
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00013 Score=66.20 Aligned_cols=95 Identities=14% Similarity=0.080 Sum_probs=67.4
Q ss_pred HHHHHHhcCCcEEEEE--ecCHHHHHHHHHcCCCEEEEecCCCC-CCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 196 VKWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~--v~~~~~a~~a~~~G~d~I~v~~~gg~-~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+..+|+..+--.++.. ..+.+++..+.+.|+|+|.++.---+ ..+..+..++.+.++++.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 4555555432234443 24678888899999999998643111 1112223456676666665 7999999999 889
Q ss_pred HHHHHHHhCCCEEEEchHHHH
Q 018919 273 DVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~ 293 (349)
++.+++..||++|.+-+.++.
T Consensus 177 n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhC
Confidence 999999999999999999874
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.6e-05 Score=66.44 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=60.3
Q ss_pred cCHHHHHHHHHcCCCEEEEecCC--CC-CCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 LTAEDARIAVQAGAAGIIVSNHG--AR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~~~g--g~-~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+.++++.+.+.|+|.|.++... .. +....+..++.+.++++.. ++||++.|||. .+++.+++.+||++|.+|+
T Consensus 103 ~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 103 HSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEeh
Confidence 57889999999999999986431 11 1111344567777777654 79999999995 6999999999999999999
Q ss_pred HHHH
Q 018919 290 PVVY 293 (349)
Q Consensus 290 ~~l~ 293 (349)
.++.
T Consensus 180 ~i~~ 183 (196)
T cd00564 180 AITG 183 (196)
T ss_pred Hhhc
Confidence 9763
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.5e-05 Score=66.50 Aligned_cols=135 Identities=30% Similarity=0.391 Sum_probs=88.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~ 217 (349)
.+.++.++++|+-++.. +.- -+.|+|..-.+. -+-|| +.|+++.+...+||+.|.. -+..+
T Consensus 30 ~EQA~IAE~aGAvAVMa-Ler-----vPaDiR~aGGVa---------RMaDp---~~i~eim~aVsIPVMAKvRIGH~~E 91 (296)
T COG0214 30 AEQARIAEEAGAVAVMA-LER-----VPADIRAAGGVA---------RMADP---KMIEEIMDAVSIPVMAKVRIGHFVE 91 (296)
T ss_pred HHHHHHHHhcCceeEee-hhh-----CcHHHHhccCcc---------ccCCH---HHHHHHHHhcccceeeeeecchhHH
Confidence 45678889999988642 321 113444221100 02233 6788888999999999986 56788
Q ss_pred HHHHHHcCCCEEEEec---------C------------CCCCC---------------C-----Cc--------------
Q 018919 218 ARIAVQAGAAGIIVSN---------H------------GARQL---------------D-----YV-------------- 242 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~---------~------------gg~~~---------------~-----~~-------------- 242 (349)
|+.+...|+|.|.=|- | |.|.+ . +|
T Consensus 92 A~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~ 171 (296)
T COG0214 92 AQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKING 171 (296)
T ss_pred HHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 9999999999998551 1 21110 0 00
Q ss_pred --------------------hhhHHHHHHHHHHhcCCCcE--EEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 243 --------------------PATIMALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 243 --------------------~~~~~~l~~i~~~~~~~ipv--ia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
..+.+.+.++++. +++|| ++.|||.||.|++-++.+|||+|++|+-++.
T Consensus 172 eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~--grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 172 EIRRLQSMTEDELYVVAKELQAPYELVKEVAKL--GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred HHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh--CCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 0112333333332 35555 6899999999999999999999999997764
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0021 Score=60.62 Aligned_cols=108 Identities=25% Similarity=0.333 Sum_probs=77.3
Q ss_pred cCHHHHHHHHH-cCCCEEEEec---CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec--CCCCHHHHHHHHHhCCCEEE
Q 018919 213 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 213 ~~~~~a~~a~~-~G~d~I~v~~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G--GI~~~~dv~kal~~GA~~V~ 286 (349)
.++|+|+.+.+ .|+|.+.++. ||-.. ....-.++.|.++++.+ ++|+++=| ||.. +++.+++.+|++.|-
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~-~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~~-e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKYK-GEPGLDFERLKEIKELT--NIPLVLHGASGIPE-EQIKKAIKLGIAKIN 228 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccC-CCCccCHHHHHHHHHHh--CCCEEEECCCCCCH-HHHHHHHHcCCCEEE
Confidence 47899999997 9999999752 43221 11223578899998887 79999999 9875 889999999999999
Q ss_pred EchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 287 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 287 ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
++|.+..+... .. ..-+....+.+.+..+..|..+|..
T Consensus 229 v~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 229 IDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred ECcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977654321 00 1223344566777777788877753
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00042 Score=61.97 Aligned_cols=162 Identities=23% Similarity=0.272 Sum_probs=98.3
Q ss_pred HHHHHHHHcCCeEE-e--cCCCCC--CHHH---HHhhCCC-ceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 92 ATARAASAAGTIMT-L--SSWSTS--SVEE---VASTGPG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 92 ~la~aa~~~G~~~~-~--~~~~~~--~~e~---i~~~~~~-~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
.-++.|.+.|+-++ + -..+.. +.+. +.+..+. ...+-++.+.+.+ +..+.+.+.|++++.++-+-+
T Consensus 10 ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~---~i~~ia~~~~~d~Vqlhg~e~-- 84 (203)
T cd00405 10 EDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLE---EILEIAEELGLDVVQLHGDES-- 84 (203)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHH---HHHHHHHhcCCCEEEECCCCC--
Confidence 56777788886543 1 122222 2332 3333332 2345556544433 344556678899887653211
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHHH--HHHHHHcCCCEEEEecCCCCCC
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAED--ARIAVQAGAAGIIVSNHGARQL 239 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~~--a~~a~~~G~d~I~v~~~gg~~~ 239 (349)
.+.++.+++..+.+++-.. +.+..+ +..+...|+|++.+........
T Consensus 85 ------------------------------~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~ 134 (203)
T cd00405 85 ------------------------------PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGG 134 (203)
T ss_pred ------------------------------HHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCC
Confidence 2456777776677776222 233333 2355668999998865321110
Q ss_pred --CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 240 --DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 240 --~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
.+-+..++.+.++. . ++|+++.||| +++.+.+++..| +++|-+.|.+..
T Consensus 135 Gg~g~~~~~~~l~~~~--~--~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 135 GGTGKTFDWSLLRGLA--S--RKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred CCCcceEChHHhhccc--c--CCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccC
Confidence 12234577776654 2 7899999999 999999999999 999999998763
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.7e-05 Score=68.90 Aligned_cols=75 Identities=28% Similarity=0.356 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|+|.+.+..-.+. ..+.+..++.+.++++.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 34 ~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 34 AQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 5678888899999998754221 123456788888888876 79999999999999999999999999999998874
|
|
| >PRK12376 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0016 Score=59.54 Aligned_cols=175 Identities=16% Similarity=0.170 Sum_probs=114.2
Q ss_pred hHHHHHHHHHcCCeEEecCCC-------CCCHH----HHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEec
Q 018919 90 EYATARAASAAGTIMTLSSWS-------TSSVE----EVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~-------~~~~e----~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~ 157 (349)
+..-.+.+.+.|..-.++|.- ..+.+ ++.+..+ ++..+|++. .+.+.+.+.++++.+.+-. +.|.+
T Consensus 14 d~~eik~~~~~g~i~GVTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~~-~d~~~mv~eA~~l~~~~~n-v~VKI 91 (236)
T PRK12376 14 DLEEMLAAYKNPLVKGFTTNPSLMRKAGVTDYKAFAKEVLAEIPDAPISFEVFA-DDLETMEKEAEKIASLGEN-VYVKI 91 (236)
T ss_pred CHHHHHHHHhCCCeeEEECCHHHHHhcCCCCHHHHHHHHHHhcCCCcEEEEEec-CCHHHHHHHHHHHHHhCCC-eEEEE
Confidence 455666667777665565541 11233 3444444 567889864 6777777777777777544 55555
Q ss_pred CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHc----CCCEEEEe
Q 018919 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQA----GAAGIIVS 232 (349)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~----G~d~I~v~ 232 (349)
.+... +..- .+.++.+.+. ++++-+-.+.++..+..+.++ |+++|..
T Consensus 92 P~T~~--------------------------~G~~gl~Ai~~L~~~-GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yisp- 143 (236)
T PRK12376 92 PITNT--------------------------KGESTIPLIKKLSAD-GVKLNVTAIFTIEQVKEVVDALTPGVPAIVSV- 143 (236)
T ss_pred CCcCc--------------------------cchhHHHHHHHHHHC-CCeEEEeeecCHHHHHHHHHHhcCCCCeEEEE-
Confidence 43210 0001 4567777665 899999889999999765555 5888765
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHhc--CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 233 NHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 233 ~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.=||-.|.|......+.++.+.+. .+..|++.+ ||+..++.+++.+|||.|-+.-..+..+.
T Consensus 144 -fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-iR~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T PRK12376 144 -FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS-PREVYNIIQADQLGCDIITVTPDVLKKLP 207 (236)
T ss_pred -ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe-cCCHHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence 334433444444555656655442 256777766 99999999999999999999988887665
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00047 Score=67.61 Aligned_cols=182 Identities=16% Similarity=0.191 Sum_probs=108.0
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeE-EecC-----CCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHH
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-TLSS-----WSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVR 143 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~-~~~~-----~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~ 143 (349)
..|.++-++.... .+.-..+++.+...+..+ =+|+ ++...++++++..+ .+.+.-|-. .|++.+. ++
T Consensus 171 ~~p~L~vALD~~~---~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~-~Di~~~v--v~ 244 (391)
T PRK13307 171 DPPYLQVALDLPD---LEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKT-LDTGNLE--AR 244 (391)
T ss_pred ccceEEEecCCCC---HHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecc-cChhhHH--HH
Confidence 4577777765422 222234444444332222 1332 12233556666544 345555543 4555443 77
Q ss_pred HHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe--cCHHHHHH
Q 018919 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV--LTAEDARI 220 (349)
Q Consensus 144 ~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v--~~~~~a~~ 220 (349)
.+.++|++.+.+|..++ ... .+.++.+++ .++-+.+-.+ .++.+...
T Consensus 245 ~~a~aGAD~vTVH~ea~-----------------------------~~ti~~ai~~akk-~GikvgVD~lnp~tp~e~i~ 294 (391)
T PRK13307 245 MAADATADAVVISGLAP-----------------------------ISTIEKAIHEAQK-TGIYSILDMLNVEDPVKLLE 294 (391)
T ss_pred HHHhcCCCEEEEeccCC-----------------------------HHHHHHHHHHHHH-cCCEEEEEEcCCCCHHHHHH
Confidence 78899999998886432 111 234666665 4666555322 34443333
Q ss_pred HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 221 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 221 a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
....++|.|.+.. +....+..+.++.+.++++. ..+++|.++|||. .+++.+++.+|||.+.+||+++
T Consensus 295 ~l~~~vD~Vllht--~vdp~~~~~~~~kI~~ikk~-~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf 362 (391)
T PRK13307 295 SLKVKPDVVELHR--GIDEEGTEHAWGNIKEIKKA-GGKILVAVAGGVR-VENVEEALKAGADILVVGRAIT 362 (391)
T ss_pred HhhCCCCEEEEcc--ccCCCcccchHHHHHHHHHh-CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 3488999998842 21111224456677777665 3478999999999 7889899999999999999965
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00034 Score=64.48 Aligned_cols=121 Identities=19% Similarity=0.210 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCCEEE-EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHH
Q 018919 139 AQLVRRAERAGFKAIA-LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~-i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~ 217 (349)
.+.+++.++.|++.+- ++++. + ..+.++++.+.+++||.+.+-...++
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDLg~------------------------------~-n~~~i~~i~~~~~~~v~vGGGIr~e~ 89 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIMLGP------------------------------N-NDDAAKEALHAYPGGLQVGGGINDTN 89 (253)
T ss_pred HHHHHHHHHcCCCEEEEEECCC------------------------------C-cHHHHHHHHHhCCCCEEEeCCcCHHH
Confidence 4578888999999984 34411 1 14678888888889988877544588
Q ss_pred HHHHHHcCCCEEEEecC-------------------CC-C---C---C---C-------------Cch------------
Q 018919 218 ARIAVQAGAAGIIVSNH-------------------GA-R---Q---L---D-------------YVP------------ 243 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~-------------------gg-~---~---~---~-------------~~~------------ 243 (349)
++.+.++||+.+++++. |. + . . + .+.
T Consensus 90 v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~ 169 (253)
T TIGR02129 90 AQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSK 169 (253)
T ss_pred HHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHh
Confidence 99999999998888630 11 0 0 0 0 011
Q ss_pred ------------------hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh--CCCEEEEchHHH
Q 018919 244 ------------------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL--GASGIFIGRPVV 292 (349)
Q Consensus 244 ------------------~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~--GA~~V~ig~~~l 292 (349)
+.++.+.++.+.. ++|||++||+.+.+|+.++-.+ |...+.+|++++
T Consensus 170 ~~~~il~TdI~rDGtl~G~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf 236 (253)
T TIGR02129 170 YCDEFLIHAADVEGLCKGIDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALD 236 (253)
T ss_pred hCCEEEEeeecccCccccCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHH
Confidence 1223334444433 7999999999999999988555 666688898865
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00095 Score=60.06 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=89.6
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
.|.....+.+++++++|++.+-+++=- ..| +| +-.+ -+.++++|+.++.|+=+-.
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvMD-----------G~F-VP------------N~tfG~~~i~~l~~~t~~~~DvHL 65 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIED-----------TSF-IN------------NITFGMKTIQAVAQQTRHPLSFHL 65 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccC-----------CCc-CC------------ccccCHHHHHHHHhcCCCCeEEEe
Confidence 566777889999999999986554411 011 12 1233 5789999988888876665
Q ss_pred e-cCHHH-HHHHHHcCCCEEEEecC---------------CC---------CC----------CC-----------Cc--
Q 018919 212 V-LTAED-ARIAVQAGAAGIIVSNH---------------GA---------RQ----------LD-----------YV-- 242 (349)
Q Consensus 212 v-~~~~~-a~~a~~~G~d~I~v~~~---------------gg---------~~----------~~-----------~~-- 242 (349)
. .+|+. ++...++|+|.|++.-. |. +. .| +|
T Consensus 66 Mv~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~ 145 (210)
T PRK08005 66 MVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQ 145 (210)
T ss_pred ccCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccce
Confidence 3 45654 67888999999998521 11 00 01 12
Q ss_pred --hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 243 --PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 243 --~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+..++-+.++++... ...|-+||||+ .+.+.++.++|||.+.+||+++
T Consensus 146 f~~~~~~KI~~l~~~~~-~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 146 FIAAMCEKVSQSREHFP-AAECWADGGIT-LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred ecHHHHHHHHHHHHhcc-cCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 223445555544432 35799999998 4778788999999999999864
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.6e-05 Score=69.48 Aligned_cols=76 Identities=34% Similarity=0.436 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.|+.+.+.|+|.+.+....+. ..+.+..++.+.++.+.+ ++|+++.|||++.+|+.+++..|||.|++|+..+.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 37788888999999999743221 122445678888888877 79999999999999999999999999999998763
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0011 Score=60.32 Aligned_cols=153 Identities=16% Similarity=0.218 Sum_probs=95.9
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
.|.....+.++++++ |++.+-+++=- ..| +| +-.+ -+.++++|+.+++|+=+-.
T Consensus 12 ad~~~l~~el~~l~~-g~d~lH~DiMD-----------G~F-VP------------N~tfg~~~i~~ir~~t~~~~DvHL 66 (229)
T PRK09722 12 MDLLKFKEQIEFLNS-KADYFHIDIMD-----------GHF-VP------------NLTLSPFFVSQVKKLASKPLDVHL 66 (229)
T ss_pred cCHHHHHHHHHHHHh-CCCEEEEeccc-----------Ccc-CC------------CcccCHHHHHHHHhcCCCCeEEEE
Confidence 466667788888888 88886554411 011 12 1223 5789999988888876655
Q ss_pred -ecCHH-HHHHHHHcCCCEEEEecC----------------CCC---------C----------CC-----------Cc-
Q 018919 212 -VLTAE-DARIAVQAGAAGIIVSNH----------------GAR---------Q----------LD-----------YV- 242 (349)
Q Consensus 212 -v~~~~-~a~~a~~~G~d~I~v~~~----------------gg~---------~----------~~-----------~~- 242 (349)
+.+|+ .++...++|+|.|++.-. |-+ . .| +|
T Consensus 67 Mv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ 146 (229)
T PRK09722 67 MVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQ 146 (229)
T ss_pred EecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcch
Confidence 35664 467888999999998521 100 0 01 12
Q ss_pred ---hhhHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 243 ---PATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
+.+++-+.++++.... ++.|-+||||+. +.+.++.++|||.+.+||..+|+. .+...+.++.+++.++
T Consensus 147 ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~~i~~~~~aGad~~V~Gss~iF~~----~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 147 PFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQ-KTYEKLMEAGADVFIVGTSGLFNL----DEDIDEAWDIMTAQIE 220 (229)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEEChHHHcCC----CCCHHHHHHHHHHHHH
Confidence 2344455555554321 477999999984 688888999999999998766621 1223445566655443
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0041 Score=58.65 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=74.1
Q ss_pred cCHHHHHHHH-HcCCCEEEEecCCCCCCCCc--hhhHHHHHHHHHHhcCCCcEEEecC--CCCHHHHHHHHHhCCCEEEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvia~GG--I~~~~dv~kal~~GA~~V~i 287 (349)
.++++|++.. +.|+|.+.++...-+..+.+ ...++.|.++++.+ ++|+++-|| |. .+++.+++.+|++.|-+
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv 232 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKINF 232 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEEe
Confidence 3568888887 79999999853211112223 24688899998877 699999999 77 47899999999999999
Q ss_pred chHHHHHHhh-------cCH-------HHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 288 GRPVVYSLAA-------EGE-------KGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 288 g~~~l~~~~~-------~G~-------~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
+|.+..+... ... .-.....+.+++..+..|+.+|..
T Consensus 233 ~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 233 YTGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred hhHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9987654311 010 112333455666666777777643
|
|
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00024 Score=62.76 Aligned_cols=135 Identities=27% Similarity=0.372 Sum_probs=84.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~ 217 (349)
.+.++.++++|+.++..--..| .|+|..-.+- + +-|| ..|+++++...+|++.|.. -+.-+
T Consensus 31 ~eQA~iAE~aGACaVmalervP------adiR~~GgV~-----R----MsDP---~mIKei~~aVsiPVMAk~RiGHFVE 92 (296)
T KOG1606|consen 31 AEQARIAEEAGACAVMALERVP------ADIRAQGGVA-----R----MSDP---RMIKEIKNAVSIPVMAKVRIGHFVE 92 (296)
T ss_pred HHHHHHHHhcCcceEeeeccCC------HhHHhcCCee-----e----cCCH---HHHHHHHHhccchhhhhhhhhhhhH
Confidence 4567888999998875322222 2333211100 0 2233 6788888888999999975 45678
Q ss_pred HHHHHHcCCCEEEEe---------cC------------CCCC------------------CC--Cch-------------
Q 018919 218 ARIAVQAGAAGIIVS---------NH------------GARQ------------------LD--YVP------------- 243 (349)
Q Consensus 218 a~~a~~~G~d~I~v~---------~~------------gg~~------------------~~--~~~------------- 243 (349)
|+.+...|+|+|.=| +| |-+. .+ .|.
T Consensus 93 AQIlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~g 172 (296)
T KOG1606|consen 93 AQILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSING 172 (296)
T ss_pred HHHHHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHH
Confidence 889999999998744 11 1110 00 010
Q ss_pred ---------------------hhHHHHHHHHHHhcCCCcE--EEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 244 ---------------------ATIMALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 244 ---------------------~~~~~l~~i~~~~~~~ipv--ia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.+.+.+..+. +++|| ++.|||.++.|++-++.+|+|+|.+|+-++.
T Consensus 173 eir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~--GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 173 EIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQL--GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred HHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHc--CCCceEEecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 011122221111 46676 6899999999999999999999999996653
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00047 Score=62.18 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=99.1
Q ss_pred hhhHHHHHHHHHcCCeEE-ecCCCCC---CHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 88 EGEYATARAASAAGTIMT-LSSWSTS---SVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 88 ~~~~~la~aa~~~G~~~~-~~~~~~~---~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
+.-..+++++.+.|+..+ ++-.++. .++++++..|+. .+ - .+--.+.+.++.+.++|++.+. +|.
T Consensus 27 ~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~-~I--G--AGTVl~~~~a~~a~~aGA~Fiv----sP~-- 95 (212)
T PRK05718 27 EDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEA-LI--G--AGTVLNPEQLAQAIEAGAQFIV----SPG-- 95 (212)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCC-EE--E--EeeccCHHHHHHHHHcCCCEEE----CCC--
Confidence 334578999999998865 4422222 344555555532 11 1 1112234678888999999875 121
Q ss_pred chhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCch
Q 018919 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVP 243 (349)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~ 243 (349)
.+ -+.++..++ .++|++- ++.|+.++..+.++|++.|.+.-.+- . +|+
T Consensus 96 ------------------------~~---~~vi~~a~~-~~i~~iP-G~~TptEi~~a~~~Ga~~vKlFPa~~--~-gg~ 143 (212)
T PRK05718 96 ------------------------LT---PPLLKAAQE-GPIPLIP-GVSTPSELMLGMELGLRTFKFFPAEA--S-GGV 143 (212)
T ss_pred ------------------------CC---HHHHHHHHH-cCCCEeC-CCCCHHHHHHHHHCCCCEEEEccchh--c-cCH
Confidence 01 244555544 6888864 68899999999999999999953210 1 223
Q ss_pred hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 244 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 244 ~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
..++.++.-++ +++++..|||.. +++.+++.+|+..++.|+.+
T Consensus 144 ---~~lk~l~~p~p-~~~~~ptGGV~~-~ni~~~l~ag~v~~vggs~L 186 (212)
T PRK05718 144 ---KMLKALAGPFP-DVRFCPTGGISP-ANYRDYLALPNVLCIGGSWM 186 (212)
T ss_pred ---HHHHHHhccCC-CCeEEEeCCCCH-HHHHHHHhCCCEEEEEChHh
Confidence 34444444443 699999999987 89999999996555555444
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00047 Score=61.55 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=102.9
Q ss_pred CCHHHHHhhCCCceE-EEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC
Q 018919 112 SSVEEVASTGPGIRF-FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (349)
Q Consensus 112 ~~~e~i~~~~~~~~~-~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~ 190 (349)
..++.+++..|...+ .-+ +.-+.-.=.++.+.++|++++.+---.| .
T Consensus 45 ~aV~~lr~~~pd~~IvAD~---Kt~D~G~~e~~ma~~aGAd~~tV~g~A~-----------------------------~ 92 (217)
T COG0269 45 RAVRALRELFPDKIIVADL---KTADAGAIEARMAFEAGADWVTVLGAAD-----------------------------D 92 (217)
T ss_pred HHHHHHHHHCCCCeEEeee---eecchhHHHHHHHHHcCCCEEEEEecCC-----------------------------H
Confidence 456777888884333 222 2222223356788899999976422111 1
Q ss_pred chHH-HHHHHHHhcCCcEEEEEe--cCHHHHHH-HHHcCCCEEEEecCCCC--CCCCchhhHHHHHHHHHHhcCCCcEEE
Q 018919 191 KMDE-DVKWLQTITKLPILVKGV--LTAEDARI-AVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFL 264 (349)
Q Consensus 191 ~~~~-~i~~i~~~~~~pv~vK~v--~~~~~a~~-a~~~G~d~I~v~~~gg~--~~~~~~~~~~~l~~i~~~~~~~ipvia 264 (349)
...+ -++..+ ++++-+.+=++ .++++..+ +.++|+|.+.+ |-|+ |..+-.+.++.|.++++.......|-.
T Consensus 93 ~TI~~~i~~A~-~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAV 169 (217)
T COG0269 93 ATIKKAIKVAK-EYGKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAV 169 (217)
T ss_pred HHHHHHHHHHH-HcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--EecccHhhcCCCccHHHHHHHHHhhccCceEEE
Confidence 1122 344444 46777776665 45666554 44599999999 5554 222333346777777776643589999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
.|||. ++++-.+...|++.|.+||++. +..++.+..+.+++++.
T Consensus 170 aGGI~-~~~i~~~~~~~~~ivIvGraIt------~a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 170 AGGIT-PEDIPLFKGIGADIVIVGRAIT------GAKDPAEAARKFKEEID 213 (217)
T ss_pred ecCCC-HHHHHHHhcCCCCEEEECchhc------CCCCHHHHHHHHHHHHh
Confidence 99986 5999999999999999999886 34444556667777664
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00025 Score=62.91 Aligned_cols=81 Identities=22% Similarity=0.243 Sum_probs=61.0
Q ss_pred EecCHHHHHHHHHcCCCEEEEecCCCCCCCC---chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 211 GVLTAEDARIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 211 ~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~---~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+-+.+++.++.+.|+|+|.++.-..+..+. .+..++.+.++.+... ++||++.||| +.+++.+++.+||++|.+
T Consensus 102 s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 102 STHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred eCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 3567888889999999999986532221111 1224677777766542 5999999999 589999999999999999
Q ss_pred chHHHH
Q 018919 288 GRPVVY 293 (349)
Q Consensus 288 g~~~l~ 293 (349)
|+.++.
T Consensus 180 ~~~i~~ 185 (196)
T TIGR00693 180 VSAIMQ 185 (196)
T ss_pred hHHhhC
Confidence 999873
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.1e-05 Score=69.60 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=84.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecC-HHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLT-AED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~-~~~ 217 (349)
.+.++.++++|++.+.++..||.. .+.. .++-. +.+ .++|+.+++.+++||+.|.... ..+
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd------~~~~----gg~~R-----m~~---p~~I~aIk~~V~iPVigk~Righ~~E 88 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPAD------IRAA----GGVAR-----MAD---PKMIEEIMDAVSIPVMAKARIGHFVE 88 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCch------Hhhc----CCeee-----cCC---HHHHHHHHHhCCCCeEEeehhhHHHH
Confidence 457888999999999999999853 1110 01100 112 3778899999999999998644 789
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
|+.+.++|+|.|.-|.. - .|.-+.+..++..+ ++|++ -|++|-++++.++.+|||.|.
T Consensus 89 a~~L~~~GvDiID~Te~------l-rpad~~~~~~K~~f--~~~fm--ad~~~l~EAlrai~~GadmI~ 146 (293)
T PRK04180 89 AQILEALGVDYIDESEV------L-TPADEEYHIDKWDF--TVPFV--CGARNLGEALRRIAEGAAMIR 146 (293)
T ss_pred HHHHHHcCCCEEeccCC------C-CchHHHHHHHHHHc--CCCEE--ccCCCHHHHHHHHHCCCCeee
Confidence 99999999999953221 0 11234455555444 56666 579999999999999999875
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00014 Score=67.00 Aligned_cols=74 Identities=27% Similarity=0.239 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|+|.+.+..--+. .+.....+.+.++.+.+ .+||.++|||+|.+|+.+++.+||+.|.+|+..+.
T Consensus 36 ~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 36 DAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 6788888999998887542221 13345678899998887 79999999999999999999999999999998764
|
|
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00035 Score=67.51 Aligned_cols=95 Identities=21% Similarity=0.238 Sum_probs=68.5
Q ss_pred HHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCC--CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 196 VKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 196 i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+...|+..+ -.++--.+-+.+++..|.+.|+|+|.++.-..+.- ...+..++.+..+++.. ++||++-|||. .+
T Consensus 230 ~~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~ 306 (347)
T PRK02615 230 LAVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KS 306 (347)
T ss_pred HHHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HH
Confidence 344455443 23332234678999999999999999875433321 11234467777777655 79999999995 79
Q ss_pred HHHHHHHhCCCEEEEchHHHH
Q 018919 273 DVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~ 293 (349)
++.+.+++||++|.++++++.
T Consensus 307 ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 307 NIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred HHHHHHHcCCcEEEEeHHHhC
Confidence 999999999999999999873
|
|
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00021 Score=65.92 Aligned_cols=128 Identities=23% Similarity=0.209 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe--
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-- 212 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-- 212 (349)
+.-...++.+.+.|++-|.+-++... ++ . .+-+. .++|+++++..+-++.+|.+
T Consensus 83 ~~K~~Ea~~Ai~~GAdEiD~Vinig~-------lk------------~----g~~~~v~~ei~~v~~~~~~~~~lKVIlE 139 (257)
T PRK05283 83 DIALAETRAAIAYGADEVDVVFPYRA-------LM------------A----GNEQVGFELVKACKEACAANVLLKVIIE 139 (257)
T ss_pred HHHHHHHHHHHHcCCCEEeeeccHHH-------Hh------------C----CcHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence 34445666777889998766554310 00 0 01222 46788888876434677876
Q ss_pred ---cCHHH-----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHHHH
Q 018919 213 ---LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALA 279 (349)
Q Consensus 213 ---~~~~~-----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~kal~ 279 (349)
++.++ .+.+.++|||+|..|..-+ .+..+.+.+.-+++.+ ++++-|=++||||+.+++.+++.
T Consensus 140 t~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ 215 (257)
T PRK05283 140 TGELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLA 215 (257)
T ss_pred ccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHH
Confidence 33332 3568899999999874311 2234455554444444 34689999999999999999999
Q ss_pred hCCCEEEEchHHH
Q 018919 280 LGASGIFIGRPVV 292 (349)
Q Consensus 280 ~GA~~V~ig~~~l 292 (349)
+|.+. +|.-|+
T Consensus 216 ag~~~--lg~~~~ 226 (257)
T PRK05283 216 LADEI--LGADWA 226 (257)
T ss_pred HHHHH--hChhhc
Confidence 98764 355554
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.012 Score=55.65 Aligned_cols=79 Identities=23% Similarity=0.398 Sum_probs=62.8
Q ss_pred cCHHHHHHHHHcCCCEEEEe--c-CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecC--CCCHHHHHHHHHhCCCEEEE
Q 018919 213 LTAEDARIAVQAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~--~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG--I~~~~dv~kal~~GA~~V~i 287 (349)
.++++|+.+.+.|+|.+-++ + ||-.....-.-.++.|.++++.+. ++|+++=|| |.. +++.+++..|++.|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~~-e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIPD-DQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCCH-HHHHHHHHcCCCEEEE
Confidence 47899999999999999998 3 554321111346788999988872 499999999 876 8899999999999999
Q ss_pred chHHHH
Q 018919 288 GRPVVY 293 (349)
Q Consensus 288 g~~~l~ 293 (349)
+|.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998864
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00075 Score=60.83 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=94.4
Q ss_pred hHHHHHHHHHcCCeEE-ecC----CC---CCCHHH---HHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecC
Q 018919 90 EYATARAASAAGTIMT-LSS----WS---TSSVEE---VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~-~~~----~~---~~~~e~---i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d 158 (349)
-...++.+.++|+..+ +.. +. ...++. +++..+.+.-+.++.+ +.+ +.++.+.++|++++.++..
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~-d~~---~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE-NPD---RYVPDFAKAGADIITFHVE 93 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC-CHH---HHHHHHHHcCCCEEEEeec
Confidence 3467888889997654 311 11 112333 3322221222444442 333 3456667889999988764
Q ss_pred CCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecC--C
Q 018919 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--G 235 (349)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~--g 235 (349)
.+ ....+.++.+++. ++.+++-.. .+..+..+....++|+|.+... |
T Consensus 94 ~~-----------------------------~~~~~~~~~~~~~-~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g 143 (220)
T PRK05581 94 AS-----------------------------EHIHRLLQLIKSA-GIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPG 143 (220)
T ss_pred cc-----------------------------hhHHHHHHHHHHc-CCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCC
Confidence 21 0113446666653 555544221 2333333344456898876542 2
Q ss_pred CCCCCCchhhHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 236 ARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 236 g~~~~~~~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
++.....+...+.+.++++..+. ..+|.++|||+. +++.+++..|+|.|.+||+++.
T Consensus 144 ~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 144 FGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhC
Confidence 22111223334555555554422 144779999999 8999999999999999999873
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0015 Score=61.28 Aligned_cols=143 Identities=22% Similarity=0.208 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhh---hcCCCCcCcccccCCCCCCch-----HHHHHHHHHhc-CCcEE
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKM-----DEDVKWLQTIT-KLPIL 208 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~---~~~~p~~~~~~~~~~~~~~~~-----~~~i~~i~~~~-~~pv~ 208 (349)
+.++++.+++.+.+...++-.-..+|.|.-+... +-..|..+++...-=..|-.. .+.++.+|+.. ..+|.
T Consensus 107 T~~~v~~~~~~~~~~~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~vLikdnHi~~~~i~~av~~~r~~~~~~kIe 186 (278)
T PRK08385 107 TRKLVELVKAVNPKVRVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDAILIKDNHLALVPLEEAIRRAKEFSVYKVVE 186 (278)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCChhhhHHHHHHHHhcCCcccCCCCcccEEEccCHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 4455666666677776666665666777533221 111222221111000111111 24477777754 35555
Q ss_pred EEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHHHHhCCC
Q 018919 209 VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGAS 283 (349)
Q Consensus 209 vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~kal~~GA~ 283 (349)
| .+.+.++++.++++|+|.|.+.|- +.+.+.++++.+ +.++.+.++||| +.+.+.++.+.|+|
T Consensus 187 V-Ev~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD 254 (278)
T PRK08385 187 V-EVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVD 254 (278)
T ss_pred E-EeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCC
Confidence 5 568999999999999999988763 233444444433 246889999999 88999999999999
Q ss_pred EEEEchHHH
Q 018919 284 GIFIGRPVV 292 (349)
Q Consensus 284 ~V~ig~~~l 292 (349)
.+.+|.++.
T Consensus 255 ~Is~galt~ 263 (278)
T PRK08385 255 VISLGALTH 263 (278)
T ss_pred EEEeChhhc
Confidence 999998765
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00035 Score=65.84 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh---cCCCcEEEecC
Q 018919 193 DEDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGG 267 (349)
Q Consensus 193 ~~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GG 267 (349)
.+.++.+|+..+ .+|.+ .+.+.+++..+.++|+|.|.+.|- ++ +.+.++.+.+ ..++|+.++||
T Consensus 183 ~~av~~~r~~~~~~~~I~V-Ev~tleea~eA~~~GaD~I~LDn~-------~~---e~l~~av~~~~~~~~~i~leAsGG 251 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEV-ETETLEQVQEALEYGADIIMLDNM-------PV---DLMQQAVQLIRQQNPRVKIEASGN 251 (288)
T ss_pred HHHHHHHHHhCCCCCEEEE-ECCCHHHHHHHHHcCCCEEEECCC-------CH---HHHHHHHHHHHhcCCCeEEEEECC
Confidence 355888888764 33333 357899999999999999999753 23 3444444433 35799999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 268 VRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 268 I~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
| +.+.+.++.+.|+|.+.+|+++.
T Consensus 252 I-t~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 252 I-TLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred C-CHHHHHHHHHcCCCEEEEchhhh
Confidence 9 58999999999999999999775
|
|
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00032 Score=65.74 Aligned_cols=86 Identities=24% Similarity=0.312 Sum_probs=66.0
Q ss_pred HHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 018919 195 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 195 ~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 273 (349)
.++.+|+..+ .+|.+ .+-+.++++.+.++|+|+|.+.|- +.+.+.++++..+.++|+.++||| +.+.
T Consensus 179 av~~~r~~~~~~~I~V-Ev~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGI-t~~n 246 (277)
T PRK05742 179 AVAAAHRIAPGKPVEV-EVESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGI-NEST 246 (277)
T ss_pred HHHHHHHhCCCCeEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCC-CHHH
Confidence 3667776542 33433 357899999999999999988542 345566666655558999999999 5899
Q ss_pred HHHHHHhCCCEEEEchHHH
Q 018919 274 VFKALALGASGIFIGRPVV 292 (349)
Q Consensus 274 v~kal~~GA~~V~ig~~~l 292 (349)
+.++.+.|+|.+.+|....
T Consensus 247 i~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 247 LRVIAETGVDYISIGAMTK 265 (277)
T ss_pred HHHHHHcCCCEEEEChhhc
Confidence 9999999999999998764
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00094 Score=60.07 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=69.8
Q ss_pred HHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEecCCCCCCC--CchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 196 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+...++..+-..++.. +-+.|++..+.+.|+|+|.++.-..+... ..+..++.+.++.+.. .+|+++-|||.. +
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi~~-~ 170 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGINL-E 170 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCCCH-H
Confidence 4444444444444443 35789999999999999998654444322 2233467777777765 599999999865 8
Q ss_pred HHHHHHHhCCCEEEEchHHHH
Q 018919 273 DVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.+.++.||++|.+-|+++.
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred HHHHHHHhCCCeEEehhHhhc
Confidence 999999999999999999885
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0004 Score=64.79 Aligned_cols=86 Identities=27% Similarity=0.290 Sum_probs=66.6
Q ss_pred HHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 194 EDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 194 ~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
..++++|+..+ .+|.+ .+.+.++++.|.++|+|+|.+.+- ..+.+.++.+.++.++|+.++||| +.
T Consensus 166 ~av~~~r~~~~~~~~Igv-ev~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI-~~ 233 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEV-EVESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGI-TL 233 (265)
T ss_pred HHHHHHHHhCCCCCeEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCC-CH
Confidence 34888888764 33333 467899999999999999988652 235566666666446999999999 57
Q ss_pred HHHHHHHHhCCCEEEEchHH
Q 018919 272 TDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~ 291 (349)
+.+.+..+.|||++.+|..+
T Consensus 234 ~ni~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 234 DNLEEYAETGVDVISSGALT 253 (265)
T ss_pred HHHHHHHHcCCCEEEeCHHH
Confidence 99999999999999997654
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0008 Score=58.98 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCcEE--EEEe---------cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCc
Q 018919 193 DEDVKWLQTITKLPIL--VKGV---------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 261 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~--vK~v---------~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 261 (349)
.++|+.+|+.+++||| +|-. ++.++++.+.++|+|.|-+..+..... .+..+.+.++++. ...
T Consensus 21 ~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~---~~l 94 (192)
T PF04131_consen 21 VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEK---YQL 94 (192)
T ss_dssp HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHC---TSE
T ss_pred HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHh---CcE
Confidence 3789999999999985 3421 466999999999999999987543211 2334556666553 245
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 262 VFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 262 via~GGI~~~~dv~kal~~GA~~V~i 287 (349)
++ ..|.|-+|...+..+|+|.|.-
T Consensus 95 ~M--ADist~ee~~~A~~~G~D~I~T 118 (192)
T PF04131_consen 95 VM--ADISTLEEAINAAELGFDIIGT 118 (192)
T ss_dssp EE--EE-SSHHHHHHHHHTT-SEEE-
T ss_pred Ee--eecCCHHHHHHHHHcCCCEEEc
Confidence 55 5589999999999999999853
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >TIGR02134 transald_staph transaldolase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.014 Score=53.47 Aligned_cols=175 Identities=13% Similarity=0.111 Sum_probs=114.3
Q ss_pred hHHHHHHHHHcCCeEEecCCCC-------CCHHHHH----hhC-CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEec
Q 018919 90 EYATARAASAAGTIMTLSSWST-------SSVEEVA----STG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~~-------~~~e~i~----~~~-~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~ 157 (349)
+..-.+.+.+.|..-.++|.-+ .+.+++. ... +++..+|++. .|.+.+.+.++++.+.+-. +.|.+
T Consensus 14 d~~ei~~~~~~g~i~GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~~-~d~~~m~~eA~~l~~~~~n-v~VKI 91 (236)
T TIGR02134 14 NLEEMVKFSTHPYVKGFTTNPSLMRKAGIVDYEAFAHEALAQITDLPISFEVFA-DDLDEMEKEARYIASWGNN-VNVKI 91 (236)
T ss_pred CHHHHHHHHhCCCeeEEeCCHHHHHhcCCCCHHHHHHHHHHHccCCcEEEEEec-CCHHHHHHHHHHHHhcCCC-eEEEE
Confidence 4556666777776666655411 1233322 222 3678899875 6777777777787777644 56655
Q ss_pred CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHH---HcC-CCEEEEe
Q 018919 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAV---QAG-AAGIIVS 232 (349)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~---~~G-~d~I~v~ 232 (349)
.+... .... .+.++.+++. ++++-+-.+.++..+..+. .+| +++|..
T Consensus 92 P~T~~--------------------------~G~~~l~ai~~L~~~-GI~vn~T~vfs~~Qa~~aa~A~~aG~a~yisp- 143 (236)
T TIGR02134 92 PVTNT--------------------------KGESTGPLIQKLSAD-GITLNVTALTTIEQVEKVCQSFTDGVPGIVSV- 143 (236)
T ss_pred CCcCc--------------------------ccchHHHHHHHHHHC-CCcEEeehcCCHHHHHHHHHHHhCCCCeEEEE-
Confidence 43210 0111 4667777765 8999988899999988744 589 588766
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHhc--CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 233 NHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 233 ~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.-||--|.|......+.++.+.+. .+..|++.+ +|+..++.++..+||+.+-+.-.++..+.
T Consensus 144 -fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-~R~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T TIGR02134 144 -FAGRIADTGVDPEPHMREALEIVAQKPGVELLWAS-PRELFNIIQADRIGCDIITCAHDILAKLP 207 (236)
T ss_pred -ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc-cCCHHHHHHHHHcCCCEEECCHHHHHHHH
Confidence 334433444334445555554432 357788777 99999999999999999999988887664
|
This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway. |
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00076 Score=60.36 Aligned_cols=135 Identities=21% Similarity=0.275 Sum_probs=87.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
.|.....+.+++++++|++.+-+++--. .| +| +-.+ .+.++++|+.+++|+=+-.
T Consensus 9 ad~~~l~~~i~~l~~~g~d~lHiDiMDg-----------~f-vp------------n~~~g~~~i~~i~~~~~~~~DvHL 64 (201)
T PF00834_consen 9 ADFLNLEEEIKRLEEAGADWLHIDIMDG-----------HF-VP------------NLTFGPDIIKAIRKITDLPLDVHL 64 (201)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEEEEBS-----------SS-SS------------SB-B-HHHHHHHHTTSSSEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeccc-----------cc-CC------------cccCCHHHHHHHhhcCCCcEEEEe
Confidence 4666778899999999999876554110 01 12 1123 5789999998889987666
Q ss_pred e-cCH-HHHHHHHHcCCCEEEEecC---------------CC---------CC----------CC-----------Cc--
Q 018919 212 V-LTA-EDARIAVQAGAAGIIVSNH---------------GA---------RQ----------LD-----------YV-- 242 (349)
Q Consensus 212 v-~~~-~~a~~a~~~G~d~I~v~~~---------------gg---------~~----------~~-----------~~-- 242 (349)
. .+| .-++...++|+|.|.+.-. |. +. .| +|
T Consensus 65 Mv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~ 144 (201)
T PF00834_consen 65 MVENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQK 144 (201)
T ss_dssp ESSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB-
T ss_pred eeccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCccc
Confidence 3 455 4577889999999988621 11 10 11 22
Q ss_pred --hhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 243 --PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 243 --~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+..++-+.++++.. +.++.|.+||||+. +.+.++.++|||.+.+||+++
T Consensus 145 f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 145 FIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp -HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHHT--EEEESHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHcCCCEEEECHHHh
Confidence 23455555555543 23699999999988 578788899999999999765
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00038 Score=65.07 Aligned_cols=86 Identities=27% Similarity=0.291 Sum_probs=67.9
Q ss_pred HHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 195 DVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 195 ~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
.++.+|+..+ .+|.+ .+.+.++++.+.++|+|+|.+.+- ..+.+.++.+.++.++|+.+.||| +.+
T Consensus 171 ~v~~~r~~~~~~~~Igv-ev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI-~~~ 238 (268)
T cd01572 171 AVRRARAAAPFTLKIEV-EVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGI-TLE 238 (268)
T ss_pred HHHHHHHhCCCCCeEEE-EECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCC-CHH
Confidence 4778888764 33333 457899999999999999998653 246677777666446999999999 579
Q ss_pred HHHHHHHhCCCEEEEchHHH
Q 018919 273 DVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l 292 (349)
.+.++.+.|+|++.+|+++.
T Consensus 239 ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 239 NIRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHHcCCCEEEEEeeec
Confidence 99999999999999998664
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00048 Score=62.86 Aligned_cols=75 Identities=25% Similarity=0.310 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|++.+.+..-.+ ........++.+.++++.+ ++||+++|||++.+|+.+++..||+.|.+|+..+.
T Consensus 34 ~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 34 NAARIYNAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 667888889999998865432 1123345678888888876 79999999999999999999999999999998764
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00084 Score=62.42 Aligned_cols=177 Identities=18% Similarity=0.161 Sum_probs=101.9
Q ss_pred ecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeec------CChhHHHHH
Q 018919 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVY------KDRNVVAQL 141 (349)
Q Consensus 69 ~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~------~~~~~~~~~ 141 (349)
.+++-+...|+.+ +-++ +..+.+.+. |...++.+.+. ++....... .+.++++... .+.......
T Consensus 28 a~DHG~~~Gp~~g--l~~~--~~~~~~i~~--~~da~~~~~G~--~~~~~~~~~~~~lil~ls~~t~~~~~~~~~~l~~s 99 (264)
T PRK08227 28 AFDHGYFQGPTTG--LERI--DINIAPLFP--YADVLMCTRGI--LRSVVPPATNKPVVLRASGGNSILKELSNEAVAVD 99 (264)
T ss_pred ECCCccccCCCcc--ccCh--HHHHHHHhh--cCCEEEeChhH--HHhcccccCCCcEEEEEcCCCCCCCCCCcccceec
Confidence 3445566666644 2233 334555554 44444432211 111111111 3466666432 112223344
Q ss_pred HHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHH---HHHHHHhcCCcEEEEEe------
Q 018919 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDED---VKWLQTITKLPILVKGV------ 212 (349)
Q Consensus 142 ~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~---i~~i~~~~~~pv~vK~v------ 212 (349)
++.+.+.|++++.+++..-. ..+ .+.+++ +.+-.+.|++|+++ ..
T Consensus 100 VeeAvrlGAdAV~~~v~~Gs--~~E-----------------------~~~l~~l~~v~~ea~~~G~Plla-~~prG~~~ 153 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFIGS--EYE-----------------------HQSIKNIIQLVDAGLRYGMPVMA-VTAVGKDM 153 (264)
T ss_pred HHHHHHCCCCEEEEEEecCC--HHH-----------------------HHHHHHHHHHHHHHHHhCCcEEE-EecCCCCc
Confidence 67788899999998885411 000 111223 44445568999987 33
Q ss_pred cCH-----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH-HHHH----HHHHhCC
Q 018919 213 LTA-----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVF----KALALGA 282 (349)
Q Consensus 213 ~~~-----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~----kal~~GA 282 (349)
.+. .-++.+.+.|||.|.+. +.+ +.+.++.+.+ .+||++.||=... +|++ .++..||
T Consensus 154 ~~~~~~ia~aaRiaaELGADiVK~~-------y~~----~~f~~vv~a~--~vPVviaGG~k~~~~~~L~~v~~ai~aGa 220 (264)
T PRK08227 154 VRDARYFSLATRIAAEMGAQIIKTY-------YVE----EGFERITAGC--PVPIVIAGGKKLPERDALEMCYQAIDEGA 220 (264)
T ss_pred CchHHHHHHHHHHHHHHcCCEEecC-------CCH----HHHHHHHHcC--CCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 111 22788999999999883 111 5667777765 7999999999853 3343 5777999
Q ss_pred CEEEEchHHH
Q 018919 283 SGIFIGRPVV 292 (349)
Q Consensus 283 ~~V~ig~~~l 292 (349)
.+|.+||-+.
T Consensus 221 ~Gv~~GRNIf 230 (264)
T PRK08227 221 SGVDMGRNIF 230 (264)
T ss_pred ceeeechhhh
Confidence 9999999554
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00027 Score=64.86 Aligned_cols=75 Identities=28% Similarity=0.443 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+.++.+.+.|++.+.+-...+. .......+..+.++.+.. .+|++++|||++.+|+.+++.+||+.|.+|+..+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~-~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGA-FEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhh-hcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 37788899999999987543211 112244577888888766 7999999999999999999999999999999765
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00071 Score=63.39 Aligned_cols=142 Identities=21% Similarity=0.206 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhc---CCCCcCcccccCCCCC--------CchHHHHHHHHHhcC-C
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF---TLPPFLTLKNFQGLDL--------GKMDEDVKWLQTITK-L 205 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~---~~p~~~~~~~~~~~~~--------~~~~~~i~~i~~~~~-~ 205 (349)
+.+.++.+++.+.+...++.--..+|.|.-..+.-+ ..+..+++....=..| .+..+.++.+|+..+ .
T Consensus 105 t~~~v~~~~~~~~~~~i~~TRKt~Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdnH~~~~g~~~~~~av~~~R~~~~~~ 184 (272)
T cd01573 105 TAEMVAAARAVNPDIVVATTRKAFPGTRKLALKAILAGGAVPHRLGLSETILVFAEHRAFLGGPEPLKALARLRATAPEK 184 (272)
T ss_pred HHHHHHHHhhcCCCcEEEEeCCCCccchHHHHHHHHhcCccccccCCCcceEeehhHHHHhCCchHHHHHHHHHHhCCCC
Confidence 344555555566666666655556677653332211 1111111110000001 001234777776653 3
Q ss_pred cEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 206 PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 206 pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
+|.+ .+.+.+++..+.++|+|+|.+++- .+.. +.++.+.++ .++|++++||| +.+.+.++.+.|+
T Consensus 185 ~IgV-ev~t~eea~~A~~~gaD~I~ld~~-------~p~~---l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~~Gv 252 (272)
T cd01573 185 KIVV-EVDSLEEALAAAEAGADILQLDKF-------SPEE---LAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAAAGA 252 (272)
T ss_pred eEEE-EcCCHHHHHHHHHcCCCEEEECCC-------CHHH---HHHHHHHHhccCCCceEEEECCC-CHHHHHHHHHcCC
Confidence 3322 357899999999999999998652 1222 233333322 26999999999 8899999999999
Q ss_pred CEEEEchHH
Q 018919 283 SGIFIGRPV 291 (349)
Q Consensus 283 ~~V~ig~~~ 291 (349)
|++.+|..+
T Consensus 253 d~I~vsai~ 261 (272)
T cd01573 253 DILVTSAPY 261 (272)
T ss_pred cEEEEChhh
Confidence 999777653
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00067 Score=61.78 Aligned_cols=75 Identities=31% Similarity=0.438 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|++.+.+-.-.+. ..+....++.+.++.+.+ .+|+.+.|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 32 ~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 32 EAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 6678888999999988643331 123344678888888876 79999999999999999999999999999987763
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0007 Score=63.50 Aligned_cols=88 Identities=24% Similarity=0.170 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCcEEEE-EecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 194 EDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+.++.+|+..+-..++. -+.+.++++.+.+.|+|+|.+.+ . ..+.+.++++.++.++|+.+.||| +.+
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~-------~---~~e~l~~~~~~~~~~i~i~AiGGI-t~~ 244 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN-------R---TPDEIREFVKLVPSAIVTEASGGI-TLE 244 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC-------C---CHHHHHHHHHhcCCCceEEEECCC-CHH
Confidence 45888888765222222 35789999999999999998843 1 236667777666446889999999 779
Q ss_pred HHHHHHHhCCCEEEEchHHH
Q 018919 273 DVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l 292 (349)
.+.+..+.|+|.+.+|.+..
T Consensus 245 ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 245 NLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 99999999999999998765
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00026 Score=64.69 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=57.3
Q ss_pred CH-HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 214 TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 214 ~~-~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
++ +.|+...+. ++.+.+..--|. ..+.++.++.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|++.+
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga-~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGA-FEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcch-hcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 44 446666666 887776432221 123346788888888776 7999999999999999999999999999999765
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00047 Score=62.91 Aligned_cols=66 Identities=24% Similarity=0.331 Sum_probs=52.7
Q ss_pred HcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCC-cEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 223 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 223 ~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i-pvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
-.|...+.+...++ .+.+...+.+.++++.+ +. ||++.|||++.+++.+++..|||+|.+|+.+..
T Consensus 152 ~~g~~~vYle~gs~---~g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 152 YLGMPIVYLEYGGG---AGDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred HcCCCeEEEECCCC---CCCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 35777776653322 24455678888888876 56 999999999999999999999999999999874
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0033 Score=57.20 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=79.9
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec----CH
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL----TA 215 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~----~~ 215 (349)
+.++...++|++.|.+|..+.. ...+.++++|+. +.++-+.... ..
T Consensus 82 ~~i~~~~~aGad~It~H~Ea~~-----------------------------~~~~~l~~Ik~~-g~~~kaGlalnP~Tp~ 131 (228)
T PRK08091 82 EVAKACVAAGADIVTLQVEQTH-----------------------------DLALTIEWLAKQ-KTTVLIGLCLCPETPI 131 (228)
T ss_pred HHHHHHHHhCCCEEEEcccCcc-----------------------------cHHHHHHHHHHC-CCCceEEEEECCCCCH
Confidence 4677888999999999886421 113678888875 6644444442 34
Q ss_pred HHHHHHHHcCCCEEEEec-CCCC-CCCCchhhHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 216 EDARIAVQAGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~-~gg~-~~~~~~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
+..+..++. +|.|.+=. ..|. ....-+..++-+.++++.... ++.|-+||||+. +.+.++.++|||.+.+||+
T Consensus 132 ~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 132 SLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTL-ELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCCCCEEEEChh
Confidence 666666664 89887642 2221 112234455666666554422 577999999984 7888889999999999998
Q ss_pred HH
Q 018919 291 VV 292 (349)
Q Consensus 291 ~l 292 (349)
++
T Consensus 210 lF 211 (228)
T PRK08091 210 LF 211 (228)
T ss_pred hh
Confidence 54
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00042 Score=62.22 Aligned_cols=76 Identities=25% Similarity=0.285 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.|.|++..+.|||-+++-.-... .++....++.+.++++.+ -+|+...|||++.+|+.+.|.+|||-|.|.++.+.
T Consensus 33 VelA~~Y~e~GADElvFlDItAs-~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITAS-SEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred HHHHHHHHHcCCCeEEEEecccc-cccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 37799999999999986321110 112345678888888877 79999999999999999999999999999998764
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00035 Score=64.04 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=60.8
Q ss_pred CH-HHHHHHHH-cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 214 TA-EDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 214 ~~-~~a~~a~~-~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
++ +.|+...+ .|+|.+.+..-.+. ..+.+...+.+.++.+.+ .+||.+.|||+|.+|+.+++.+||+.|.+|+..
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a 108 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKG 108 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchH
Confidence 54 66777777 69999987643221 123456788899998876 799999999999999999999999999999976
Q ss_pred H
Q 018919 292 V 292 (349)
Q Consensus 292 l 292 (349)
+
T Consensus 109 ~ 109 (234)
T PRK13587 109 I 109 (234)
T ss_pred h
Confidence 5
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00099 Score=58.45 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=57.8
Q ss_pred ecCHHHHHHHHHcCCCEEEEecCCCCCC--CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+-+.++++.+.+.|+|++.++.-..+.- +..+..++.+.++.+.. ++||++-||| +++++.++..+||++|.+-+
T Consensus 102 ~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~ 178 (180)
T PF02581_consen 102 CHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVIS 178 (180)
T ss_dssp ESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEESH
T ss_pred cCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEe
Confidence 5688999999999999999975322221 12334577888888777 6999999999 67999999999999999987
Q ss_pred HH
Q 018919 290 PV 291 (349)
Q Consensus 290 ~~ 291 (349)
++
T Consensus 179 aI 180 (180)
T PF02581_consen 179 AI 180 (180)
T ss_dssp HH
T ss_pred eC
Confidence 64
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.001 Score=61.84 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=60.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|++.+.+..-.+. .....+.++.+.++.+.. .+||+++|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 34 ~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 34 NAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred HHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 6688899999999998753221 112345788888888875 79999999999999999999999999999997653
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00035 Score=64.37 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.|+.-.+.|++.+.+-.- |++..+.+.++.+.+ .+||...||||+ +++.+++.+||+.|.+|+..+.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 57899999999999987532 334788999998877 699999999998 9999999999999999997763
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00067 Score=61.97 Aligned_cols=75 Identities=25% Similarity=0.359 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|++.+.+..-.+. ..+.+...+.+.++++.+ .+||.++|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~a~~~~~~g~~~l~ivDLdaa-~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 33 EVAKAFNEQGADELHIVDLDAA-KEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHTT-SEEEEEEHHHH-CCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEccCc-ccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 6677788899999987532111 124456788899998887 69999999999999999999999999999998764
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0073 Score=55.71 Aligned_cols=210 Identities=17% Similarity=0.185 Sum_probs=105.2
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEecCC---------CCC----C--------H---HHHHhhCC-CceE
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW---------STS----S--------V---EEVASTGP-GIRF 126 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~---------~~~----~--------~---e~i~~~~~-~~~~ 126 (349)
.||+-+..+. + -.|+.+.+.|+.+++.-. ++. + . +|+....+ .|.+
T Consensus 15 ~pIig~gaGt-G--------lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPVi 85 (268)
T PF09370_consen 15 KPIIGAGAGT-G--------LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVI 85 (268)
T ss_dssp --EEEEEESS-H--------HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EE
T ss_pred CceEEEeecc-c--------hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEE
Confidence 5777777432 2 478999999999887311 110 0 1 23333333 4666
Q ss_pred EEEeecCChh-HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch---HHHHHHHHHh
Q 018919 127 FQLYVYKDRN-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM---DEDVKWLQTI 202 (349)
Q Consensus 127 ~Ql~~~~~~~-~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~---~~~i~~i~~~ 202 (349)
+-+.. .||- .+...++++++.|+.++. |. |..|.-.-.+|+... . ..-.+ .+.|+..++.
T Consensus 86 aGv~a-tDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LE-e-----------~Gmgy~~EVemi~~A~~~ 149 (268)
T PF09370_consen 86 AGVCA-TDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLE-E-----------TGMGYDREVEMIRKAHEK 149 (268)
T ss_dssp EEE-T-T-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHH-H-----------TT--HHHHHHHHHHHHHT
T ss_pred EEecC-cCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHH-h-----------cCCCHHHHHHHHHHHHHC
Confidence 66665 4554 466789999999999974 33 433322222222110 0 00112 2334444443
Q ss_pred cCCcEEEEEecCHHHHHHHHHcCCCEEEEec---CCCC-CCCCchh---hHHHHHHHHHH---hcCC-CcEEEecCCCCH
Q 018919 203 TKLPILVKGVLTAEDARIAVQAGAAGIIVSN---HGAR-QLDYVPA---TIMALEEVVKA---TQGR-IPVFLDGGVRRG 271 (349)
Q Consensus 203 ~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~---~gg~-~~~~~~~---~~~~l~~i~~~---~~~~-ipvia~GGI~~~ 271 (349)
++ +.+-.+.++++|+...++|+|.|+++- .||. ......+ ..+.+.++.++ ++.+ +.++-.|-|.++
T Consensus 150 -gl-~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p 227 (268)
T PF09370_consen 150 -GL-FTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATP 227 (268)
T ss_dssp -T--EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SH
T ss_pred -CC-eeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCH
Confidence 32 344456799999999999999999852 1332 1111221 22333444443 3334 556666779999
Q ss_pred HHHHHHHH--hCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 272 TDVFKALA--LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 272 ~dv~kal~--~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
+|+...+. -|+++..-|+.+=+ -.+++.+....++++
T Consensus 228 ~D~~~~l~~t~~~~Gf~G~Ss~ER-------lP~E~ai~~~~~~FK 266 (268)
T PF09370_consen 228 EDAQYVLRNTKGIHGFIGASSMER-------LPVERAITETVRAFK 266 (268)
T ss_dssp HHHHHHHHH-TTEEEEEESTTTTH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEecccchhh-------ccHHHHHHHHHHHhh
Confidence 99999998 36888887776522 234555555555554
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.075 Score=50.04 Aligned_cols=108 Identities=21% Similarity=0.301 Sum_probs=74.6
Q ss_pred CHHHHHHHHHc-CCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHhCCCEEE
Q 018919 214 TAEDARIAVQA-GAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIF 286 (349)
Q Consensus 214 ~~~~a~~a~~~-G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~kal~~GA~~V~ 286 (349)
++++|+...+. |+|.+.++. ||-.. .++.+ .++.|.++++.+ ++|+++=||+..+. ++.|++.+|..-|=
T Consensus 150 ~peea~~f~~~TgvD~LAvaiGt~HG~y~-~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiN 226 (283)
T PRK08185 150 DPEQAEDFVSRTGVDTLAVAIGTAHGIYP-KDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKIN 226 (283)
T ss_pred CHHHHHHHHHhhCCCEEEeccCcccCCcC-CCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEE
Confidence 68888888875 999999864 33321 11122 478899998887 79999999997765 55568899999999
Q ss_pred EchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 287 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 287 ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
++|.+..+... .. ..-.....+.+.+..+..|+.+|..
T Consensus 227 i~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 227 ISSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred eChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99976543211 01 1123334456677777788888754
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0014 Score=61.34 Aligned_cols=86 Identities=29% Similarity=0.277 Sum_probs=64.9
Q ss_pred HHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC--CCcEEEecCCCC
Q 018919 195 DVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRR 270 (349)
Q Consensus 195 ~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~--~ipvia~GGI~~ 270 (349)
.++++|+..+ .+|.+ .+.+.+++..+.++|+|.|.+.+- . .+.+.++.+.++. ++||.++|||.
T Consensus 170 ~v~~~r~~~~~~~~I~v-ev~t~eea~~A~~~gaD~I~ld~~-------~---~e~l~~~v~~i~~~~~i~i~asGGIt- 237 (269)
T cd01568 170 AVKRARAAAPFEKKIEV-EVETLEEAEEALEAGADIIMLDNM-------S---PEELKEAVKLLKGLPRVLLEASGGIT- 237 (269)
T ss_pred HHHHHHHhCCCCCeEEE-ecCCHHHHHHHHHcCCCEEEECCC-------C---HHHHHHHHHHhccCCCeEEEEECCCC-
Confidence 4788888764 33433 467899999999999999999652 1 2444555554433 78999999986
Q ss_pred HHHHHHHHHhCCCEEEEchHHH
Q 018919 271 GTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 271 ~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+.+.++.+.|||++.+|+.+.
T Consensus 238 ~~ni~~~a~~Gad~Isvgal~~ 259 (269)
T cd01568 238 LENIRAYAETGVDVISTGALTH 259 (269)
T ss_pred HHHHHHHHHcCCCEEEEcHHHc
Confidence 5899999999999999986553
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0043 Score=55.98 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=31.4
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 259 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 259 ~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
..++|..||||+++.+.+...+|||.+.+|+.+..
T Consensus 191 ~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee 225 (240)
T COG1646 191 DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEE 225 (240)
T ss_pred cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeec
Confidence 56999999999999998888899999999997753
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.018 Score=53.33 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=98.9
Q ss_pred HHHHHHcCCeEEe-cCCCCC------CHHH----------HHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEe
Q 018919 94 ARAASAAGTIMTL-SSWSTS------SVEE----------VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (349)
Q Consensus 94 a~aa~~~G~~~~~-~~~~~~------~~e~----------i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~ 156 (349)
+++..+.|+..++ ..+... .++. ++...+-|..+|+-. +|.. +.+..+...|++.|-++
T Consensus 34 a~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~-nd~~---aal~iA~a~ga~FIRv~ 109 (257)
T TIGR00259 34 AMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLR-NDAV---AALAIAMAVGAKFIRVN 109 (257)
T ss_pred HHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeec-CCCH---HHHHHHHHhCCCEEEEc
Confidence 4457788888775 333221 2222 222222357788755 3433 34556778899998654
Q ss_pred cCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEEEEe---------cCH-HHHHHHHHc
Q 018919 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILVKGV---------LTA-EDARIAVQA 224 (349)
Q Consensus 157 ~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~v---------~~~-~~a~~a~~~ 224 (349)
+=+- .+..++| +.++.. ..+-+.|+.. ++.|+.-.. .+. +.++.+...
T Consensus 110 ~~~g-----------~~~~d~G--------~~~~~a-~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~ 169 (257)
T TIGR00259 110 VLTG-----------VYASDQG--------IIEGNA-GELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVER 169 (257)
T ss_pred cEee-----------eEecccc--------cccccH-HHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHh
Confidence 3211 0111111 122222 2333444443 344432211 123 557777777
Q ss_pred C-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 225 G-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 225 G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
| +|+|++++.+- +.+.+++.+.++++.. .+.|++..||+. ++.+.+++.. ||+|.+||.|=
T Consensus 170 ~~aDavivtG~~T----G~~~d~~~l~~vr~~~-~~~PvllggGvt-~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 170 GLADAVILSGKTT----GTEVDLELLKLAKETV-KDTPVLAGSGVN-LENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred cCCCEEEECcCCC----CCCCCHHHHHHHHhcc-CCCeEEEECCCC-HHHHHHHHhh-CCEEEECCCcc
Confidence 7 99999987531 3456788888887655 368999999975 5899999887 99999999764
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00081 Score=61.58 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+.|+...+.|+|.+.+..-.+. .+.+...+.+.++.+.+ .+|+.+.|||++.+|+.+++.+||+.|.+|+..+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 36788888999999988643222 13456688888888876 6899999999999999999999999999999654
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0097 Score=54.95 Aligned_cols=130 Identities=12% Similarity=0.162 Sum_probs=82.2
Q ss_pred EEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCc
Q 018919 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLP 206 (349)
Q Consensus 127 ~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~p 206 (349)
+.|.. .+|+ +.++...++|++.|.+|..+.. ...+.++++|+. +.+
T Consensus 80 vHLMV-~~P~---~~i~~~~~aGad~It~H~Ea~~-----------------------------~~~~~l~~Ir~~-G~k 125 (254)
T PRK14057 80 VHLMV-ADQW---TAAQACVKAGAHCITLQAEGDI-----------------------------HLHHTLSWLGQQ-TVP 125 (254)
T ss_pred EEeee-CCHH---HHHHHHHHhCCCEEEEeecccc-----------------------------CHHHHHHHHHHc-CCC
Confidence 34443 3454 4677788899999999987421 113568888875 442
Q ss_pred -------EEEEEe----cCHHHHHHHHHcCCCEEEEec-CCCC-CCCCchhhHHHHHHHHHHhc---CCCcEEEecCCCC
Q 018919 207 -------ILVKGV----LTAEDARIAVQAGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRR 270 (349)
Q Consensus 207 -------v~vK~v----~~~~~a~~a~~~G~d~I~v~~-~gg~-~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~ 270 (349)
+-+... ...+..+..++. +|.|.+=. ..|. ....-+..++-+.++++..+ .++.|-+||||..
T Consensus 126 ~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~ 204 (254)
T PRK14057 126 VIGGEMPVIRGISLCPATPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ 204 (254)
T ss_pred cccccccceeEEEECCCCCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH
Confidence 222233 234666666665 88887642 2221 11123445555665555442 2578999999986
Q ss_pred HHHHHHHHHhCCCEEEEchHHH
Q 018919 271 GTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 271 ~~dv~kal~~GA~~V~ig~~~l 292 (349)
+.+.++.++|||.+.+||+++
T Consensus 205 -~ti~~l~~aGad~~V~GSalF 225 (254)
T PRK14057 205 -DQLPSLIAQGIDRVVSGSALF 225 (254)
T ss_pred -HHHHHHHHCCCCEEEEChHhh
Confidence 678888999999999999854
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00091 Score=60.47 Aligned_cols=69 Identities=22% Similarity=0.254 Sum_probs=54.7
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
|..+...|...|.+. ..|. ....+.+..+++.+. ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 141 A~aae~~g~~ivyLe-~SG~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 141 ALAAEYLGMPIVYLE-YSGA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHHHHHcCCeEEEeC-CCCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 566777888888786 2221 235677777777652 68999999999999999999999999999999874
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0036 Score=58.26 Aligned_cols=119 Identities=20% Similarity=0.204 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec-CHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL-TAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~-~~~~ 217 (349)
.+.++.++++|+-++..--..| .|+|..- ++. + +.+ .++|+++++.+++||+.|... ...+
T Consensus 20 ~eqa~iae~aga~avm~le~~p------~d~r~~g----gv~-R----~~~---p~~I~~I~~~V~iPVig~~kigh~~E 81 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVP------ADIRASG----GVA-R----MSD---PKMIKEIMDAVSIPVMAKVRIGHFVE 81 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCc------hhhHhcC----Cee-e----cCC---HHHHHHHHHhCCCCEEEEeeccHHHH
Confidence 4578889999998875311122 2333211 110 0 112 478999999999999988764 4789
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
|+.+.++|+|.|.-|.. - .|.-+.+..++..+ ++|++ .|++|-++++.++..|||.|.
T Consensus 82 a~~L~~~GvDiIDeTe~------l-rPade~~~~~K~~f--~vpfm--ad~~~l~EAlrai~~GadmI~ 139 (287)
T TIGR00343 82 AQILEALGVDYIDESEV------L-TPADWTFHIDKKKF--KVPFV--CGARDLGEALRRINEGAAMIR 139 (287)
T ss_pred HHHHHHcCCCEEEccCC------C-CcHHHHHHHHHHHc--CCCEE--ccCCCHHHHHHHHHCCCCEEe
Confidence 99999999999953321 1 12334455554443 56666 679999999999999999874
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.063 Score=50.53 Aligned_cols=107 Identities=14% Similarity=0.235 Sum_probs=74.9
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh-hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 286 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V~ 286 (349)
.+|++|++.. +.|+|.+-++. ||-+ .+|. .++.|.+|.+.+ ++|++.-||=..+ +++.+++.+|+.-|=
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y---~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLE---DIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCC---CCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEE
Confidence 4678876654 69999999874 5533 3332 478999998887 7999999988877 667779999999999
Q ss_pred EchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 287 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 287 ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
++|.+..+... .. ..-.....+.+++..+..|..+|..
T Consensus 228 i~Tel~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 228 IASDLRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred ECHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99976543210 00 0113334456777777888888754
|
|
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0025 Score=59.74 Aligned_cols=87 Identities=22% Similarity=0.198 Sum_probs=69.5
Q ss_pred HHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 194 EDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 194 ~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
+.++++|+..+ .+|.| .+.+.++++.++++|+|.|.+.|- +.+.+.++.+.++.+.++-++|||.-
T Consensus 182 ~ai~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI~~- 249 (281)
T PRK06106 182 EAIRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRITP- 249 (281)
T ss_pred HHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCCCH-
Confidence 55888887764 45655 578999999999999999999764 34666677776666789999999864
Q ss_pred HHHHHHHHhCCCEEEEchHHH
Q 018919 272 TDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~l 292 (349)
+.+.++.+.|+|.+.+|....
T Consensus 250 ~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 250 ETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHHhcCCCEEEeChhhc
Confidence 888888889999999998654
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0018 Score=58.84 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=45.5
Q ss_pred HcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 223 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 223 ~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
=.|...|.+--..|+ .++.+ ..+.++++.+ .++|+|..|||||++++.+++..|||.|.+|+.|..
T Consensus 151 ~~g~~~iYLEaGSGa---~~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGA---YGPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp HTT-SEEEEE--TTS---SS-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred HhCCCEEEEEeCCCC---CCCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 378888888542232 22322 3344455554 389999999999999999999999999999999875
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0026 Score=58.26 Aligned_cols=74 Identities=22% Similarity=0.173 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|+|.+.+-.-.+.. +.+...+.+.++.+.. -.|+...|||++.+|+.+++.+||+-|.+|+..+.
T Consensus 34 ~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 34 EIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred HHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 66888888999999886543321 3455678888887743 25999999999999999999999999999997653
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0016 Score=58.39 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=52.0
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+..+...|++.|.+....|. ..+.+.+.+.++++.+ ++|++..||||+.+++.+++..|||.|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45567789999988542232 1223467788888877 799999999999999999889999999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0025 Score=59.97 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=69.0
Q ss_pred HHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 194 EDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 194 ~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
+.++++|+..+ .+|.| .+.+.|+++.++++|+|.|.+.|- +.+.+.++.+.++.++.+-++|||. .
T Consensus 185 ~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI~-~ 252 (290)
T PRK06559 185 KAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNID-M 252 (290)
T ss_pred HHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCCC-H
Confidence 55888887764 45555 468999999999999999999763 3456666666666688999999986 4
Q ss_pred HHHHHHHHhCCCEEEEchHHH
Q 018919 272 TDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~l 292 (349)
+.+.++...|+|.+.+|.+..
T Consensus 253 ~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 253 TTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 888888889999999998664
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0072 Score=56.24 Aligned_cols=118 Identities=21% Similarity=0.177 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC-HH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT-AE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~-~~ 216 (349)
.+.++.++++|+-++.+--..|. |+|..- + .-+.. .++|+.+++.+++||+-+.-.. ..
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~------~~~~~~----~---------v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~~~ 78 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPA------DIRAAG----G---------VARMADPKMIKEIMDAVSIPVMAKVRIGHFV 78 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCch------hhhhcC----C---------eeecCCHHHHHHHHHhCCCCeEEeeehhHHH
Confidence 45678899999988764222221 222110 1 11111 5889999999999999776543 68
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 217 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
+++.+.++|+|.|.-+.. -.| .-+.+..++... ++|++ .|++|-+++..+..+|||.|.
T Consensus 79 Ea~~L~eaGvDiIDaT~r------~rP-~~~~~~~iK~~~--~~l~M--AD~stleEal~a~~~Gad~I~ 137 (283)
T cd04727 79 EAQILEALGVDMIDESEV------LTP-ADEEHHIDKHKF--KVPFV--CGARNLGEALRRISEGAAMIR 137 (283)
T ss_pred HHHHHHHcCCCEEeccCC------CCc-HHHHHHHHHHHc--CCcEE--ccCCCHHHHHHHHHCCCCEEE
Confidence 999999999999953211 111 334555555443 56666 569999999999999999875
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0026 Score=57.45 Aligned_cols=80 Identities=28% Similarity=0.316 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcC----CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCC
Q 018919 193 DEDVKWLQTITK----LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 268 (349)
Q Consensus 193 ~~~i~~i~~~~~----~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 268 (349)
.+.|+.++++++ +.|.+..+.+.++++.+.++|+++|+- .+ . ..+.+. .+... ++|++ -|+
T Consensus 52 ~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs-P~------~---~~~v~~-~~~~~--~i~~i--PG~ 116 (213)
T PRK06552 52 SEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS-PS------F---NRETAK-ICNLY--QIPYL--PGC 116 (213)
T ss_pred HHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC-CC------C---CHHHHH-HHHHc--CCCEE--CCc
Confidence 677999998873 567788889999999999999999963 11 0 112222 22222 67776 599
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q 018919 269 RRGTDVFKALALGASGIFI 287 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~i 287 (349)
.|++++.+++.+|||.|.+
T Consensus 117 ~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 117 MTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999998
|
|
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0034 Score=58.85 Aligned_cols=88 Identities=22% Similarity=0.216 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC
Q 018919 193 DEDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270 (349)
Q Consensus 193 ~~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 270 (349)
.+.++++|+..+ .+|.| .+.+.++++.++++|+|.|.+.|- +.+.+.++.+.++++..+-++|||.
T Consensus 180 ~~av~~~r~~~~~~~kIeV-Ev~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI~- 247 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVEV-EVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNVN- 247 (281)
T ss_pred HHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCCC-
Confidence 455778887764 45555 578999999999999999999764 3455666666666678899999986
Q ss_pred HHHHHHHHHhCCCEEEEchHHH
Q 018919 271 GTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 271 ~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+.+.++...|+|.+.+|....
T Consensus 248 ~~ni~~yA~tGVD~Is~galth 269 (281)
T PRK06543 248 LNTVGAIASTGVDVISVGALTH 269 (281)
T ss_pred HHHHHHHHhcCCCEEEeCcccc
Confidence 4888888889999999998654
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0064 Score=52.90 Aligned_cols=91 Identities=24% Similarity=0.269 Sum_probs=64.5
Q ss_pred HHHHHHHHhcC-Cc-EEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 194 EDVKWLQTITK-LP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 194 ~~i~~i~~~~~-~p-v~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
+.++.+++..+ .+ |.+ .+.+.++++.++++|+|.|.+.|- .|..+..+.+..+..+.++.|.++|||.-
T Consensus 68 ~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~lD~~-------~~~~~~~~v~~l~~~~~~v~ie~SGGI~~- 138 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADIIMLDNM-------SPEDLKEAVEELRELNPRVKIEASGGITL- 138 (169)
T ss_dssp HHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEEEEES--------CHHHHHHHHHHHHHHTTTSEEEEESSSST-
T ss_pred HHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEEEecCc-------CHHHHHHHHHHHhhcCCcEEEEEECCCCH-
Confidence 45778887763 33 555 567899999999999999999763 23333222222234555799999999865
Q ss_pred HHHHHHHHhCCCEEEEchHHHH
Q 018919 272 TDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.+.++...|+|.+.+|+....
T Consensus 139 ~ni~~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 139 ENIAEYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp TTHHHHHHTT-SEEEECHHHHS
T ss_pred HHHHHHHhcCCCEEEcChhhcC
Confidence 8888899999999999987653
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0059 Score=62.22 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=67.2
Q ss_pred HHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEecCCCCCC--CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 196 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+...|+..+-..++.. +-+.+++..+.+.|+|+|.++.-..+.. +.-+..++.+.++.+.. ++||++-|||. .+
T Consensus 380 ~~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~ 456 (502)
T PLN02898 380 VRLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-AS 456 (502)
T ss_pred HHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HH
Confidence 3555655433334433 4678999999999999999764222211 11122466777776654 79999999996 89
Q ss_pred HHHHHHHhCCC---EEEEchHHHH
Q 018919 273 DVFKALALGAS---GIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~GA~---~V~ig~~~l~ 293 (349)
++.+++++||+ +|.+++.++.
T Consensus 457 ~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 457 NAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHHHHcCCCcCceEEEEeHHhc
Confidence 99999999999 9999999873
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0024 Score=58.81 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=58.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+.|+...+.|+|.+.+-.--+. ..+.+...+.+.++.+.+ .||...||||+.+|+.+++.+||+-|.+||..+
T Consensus 34 ~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 34 ELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred HHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 6688888999999987542221 124456788888888875 699999999999999999999999999999654
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.016 Score=51.40 Aligned_cols=111 Identities=20% Similarity=0.204 Sum_probs=76.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEE--EEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPIL--VKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~--vK~ 211 (349)
+++.+..+++.+++.|+.+|-++ . .++|+.+++.+++||| +|-
T Consensus 31 ~~~iv~~mA~Aa~~gGAvgiR~~--g---------------------------------v~dIkai~~~v~vPIIGIiKr 75 (229)
T COG3010 31 SPEIVAAMALAAEQGGAVGIRIE--G---------------------------------VEDIKAIRAVVDVPIIGIIKR 75 (229)
T ss_pred chhHHHHHHHHHHhCCcceEeec--c---------------------------------hhhHHHHHhhCCCCeEEEEec
Confidence 45677778888888898876432 1 4789999999999985 332
Q ss_pred ---------ecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 212 ---------VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 212 ---------v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
..+.++...+.++|++.|.+..+-.... .+ +++ ++.+..+ .--.++.-.++|.+|.+.|..+|+
T Consensus 76 d~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP-~~--~~~---~~i~~~k-~~~~l~MAD~St~ee~l~a~~~G~ 148 (229)
T COG3010 76 DYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRP-DG--DLE---ELIARIK-YPGQLAMADCSTFEEGLNAHKLGF 148 (229)
T ss_pred CCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCC-cc--hHH---HHHHHhh-cCCcEEEeccCCHHHHHHHHHcCC
Confidence 1456899999999999999976533222 22 332 2222221 223455566899999999999999
Q ss_pred CEEE
Q 018919 283 SGIF 286 (349)
Q Consensus 283 ~~V~ 286 (349)
|.|.
T Consensus 149 D~IG 152 (229)
T COG3010 149 DIIG 152 (229)
T ss_pred cEEe
Confidence 9874
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.015 Score=53.81 Aligned_cols=168 Identities=19% Similarity=0.152 Sum_probs=98.2
Q ss_pred HHHHHHcCCeEEec-CCCC------CCHHHH----------HhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEe
Q 018919 94 ARAASAAGTIMTLS-SWST------SSVEEV----------ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (349)
Q Consensus 94 a~aa~~~G~~~~~~-~~~~------~~~e~i----------~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~ 156 (349)
++...+.|+..++= .+.. ..+|.+ ++...-+..+|+-.+ |.. +.+..+...|++.+-++
T Consensus 35 a~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~n-d~~---aalaiA~A~ga~FIRv~ 110 (254)
T PF03437_consen 35 AEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRN-DPK---AALAIAAATGADFIRVN 110 (254)
T ss_pred HHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecC-CCH---HHHHHHHHhCCCEEEec
Confidence 45577888887753 2221 123332 222223577887653 433 34556677899987654
Q ss_pred cCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCc--EEEEEe---------cCH-HHHHHH-HH
Q 018919 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLP--ILVKGV---------LTA-EDARIA-VQ 223 (349)
Q Consensus 157 ~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~p--v~vK~v---------~~~-~~a~~a-~~ 223 (349)
.=+- .+..++| +.++.. ..+-+.|+..+.. |+.-.- .+. +.++.+ ..
T Consensus 111 ~~~g-----------~~~~d~G--------~~~~~a-~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~ 170 (254)
T PF03437_consen 111 VFVG-----------AYVTDEG--------IIEGCA-GELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVER 170 (254)
T ss_pred CEEc-----------eecccCc--------cccccH-HHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHh
Confidence 3210 0001111 222222 3344555555433 332111 123 445555 56
Q ss_pred cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 224 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 224 ~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.++|+|+|++.. .+.+++.+.+.++++.+ .+||++.+|+. .+.+.+.|.. ||++.|||.|-.
T Consensus 171 ~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGvt-~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 171 GGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGVT-PENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred cCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCCC-HHHHHHHHHh-CCEEEEeeeeee
Confidence 889999997641 24467788899998887 39999999975 5888887765 999999998753
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0028 Score=57.43 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=51.9
Q ss_pred cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 224 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 224 ~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.|...|.+--.||. +.+...+.+..+++.++ ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 67787777533332 33445677888877663 69999999999999999999999999999998874
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.021 Score=53.55 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=65.1
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh---cCCCcEEEecCC
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGV 268 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI 268 (349)
.+.++.+|+.. ..+|.| .+.+.++++.+.++|+|.|.+.|- +.+.+.++.+.+ ..++.+-++|||
T Consensus 176 ~~av~~~r~~~~~~kIeV-Ev~tleea~ea~~~GaDiI~lDn~----------~~e~l~~~v~~l~~~~~~~~leasGGI 244 (277)
T TIGR01334 176 GGAIGRLKQTAPERKITV-EADTIEQALTVLQASPDILQLDKF----------TPQQLHHLHERLKFFDHIPTLAAAGGI 244 (277)
T ss_pred HHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHhccCCCEEEEEECCC
Confidence 45688888765 345554 467999999999999999999652 223344444443 347889999998
Q ss_pred CCHHHHHHHHHhCCCEEEEchHH
Q 018919 269 RRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
. .+.+.++...|+|.+.+|.++
T Consensus 245 ~-~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 245 N-PENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred C-HHHHHHHHhcCCCEEEeCcce
Confidence 6 588988888999999999874
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0059 Score=55.75 Aligned_cols=40 Identities=20% Similarity=0.412 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.|+.+++..++||++-+ +.+++++.++.+.|+|+|.+.
T Consensus 164 ~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 164 PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 5678888887889998876 689999999999999999884
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.013 Score=52.84 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=59.4
Q ss_pred ecCHHHHHHHHHcCCCEEEEecCCCCCCC---CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+-+.+++..+.+.|+|++.++.-..+... ..+..++.+.++.+.. .++||++-|||. .+++.+.++.||++|.+-
T Consensus 109 ~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvi 186 (211)
T PRK03512 109 THDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVV 186 (211)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEh
Confidence 35778899999999999999743222111 1223456666665542 269999999998 699999999999999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
+.++.
T Consensus 187 sai~~ 191 (211)
T PRK03512 187 SAITQ 191 (211)
T ss_pred hHhhC
Confidence 99873
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.13 Score=48.62 Aligned_cols=181 Identities=17% Similarity=0.165 Sum_probs=106.8
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe-----cCCCCCCHHHHHh-------hCC--CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-----~~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-..-.+.++-..+.+-+.+.|+-+++ |++...+.+|..+ ..+ .+.++++.. .+.+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 46777887544444555566788888888976654 3334566665322 222 345566543 35667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.+.++.+++.|++++.+.- |.. . + .+++ ..+..+.+.+.+++||++=..
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p--P~~-----------~-~-----------~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~ 139 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT--PYY-----------N-K-----------PTQEGLYQHFKAIAEATDLPIILYNVPGRT 139 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC--CcC-----------C-C-----------CCHHHHHHHHHHHHhcCCCCEEEEECcccc
Confidence 78889999999999988632 210 0 0 0111 256677777778999987653
Q ss_pred ---cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 ---LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 ---~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++..+++.+.+ +-++.-+ ..+...+.++.+..++++.|+ .| ....++..+.+|+++++.|
T Consensus 140 g~~l~~~~~~~L~~~p~v~giK~s----------~~d~~~~~~~~~~~~~~~~v~-~G---~d~~~~~~l~~G~~G~is~ 205 (292)
T PRK03170 140 GVDILPETVARLAEHPNIVGIKEA----------TGDLERVSELIELVPDDFAVY-SG---DDALALPFLALGGVGVISV 205 (292)
T ss_pred CCCCCHHHHHHHHcCCCEEEEEEC----------CCCHHHHHHHHHhCCCCeEEE-EC---ChHhHHHHHHcCCCEEEEh
Confidence 4567777775432 2222221 112344444544443345444 33 1244667888999999988
Q ss_pred hHHH
Q 018919 289 RPVV 292 (349)
Q Consensus 289 ~~~l 292 (349)
...+
T Consensus 206 ~~n~ 209 (292)
T PRK03170 206 AANV 209 (292)
T ss_pred HHhh
Confidence 7644
|
|
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.011 Score=56.02 Aligned_cols=169 Identities=18% Similarity=0.090 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeecC--------Chh-HHHHHHHHHHHcC------CCEEEE
Q 018919 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYK--------DRN-VVAQLVRRAERAG------FKAIAL 155 (349)
Q Consensus 92 ~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~~--------~~~-~~~~~~~~~~~~G------~~~i~i 155 (349)
.+.+.+.+.|+..++.+.+. ++......+ .+++++|.... ++. .....++.+.+.| ++++.+
T Consensus 63 ~~i~~~~~~g~dav~~~~G~--l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v 140 (304)
T PRK06852 63 HLFRIASKAKIGVFATQLGL--IARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGY 140 (304)
T ss_pred HHHHHHHhcCCCEEEeCHHH--HHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEE
Confidence 46677777777766543221 121111112 34566654311 221 2223466777777 789888
Q ss_pred ecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHH---HHHHhcCCcEEEEEe------c---CH----HHHH
Q 018919 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVK---WLQTITKLPILVKGV------L---TA----EDAR 219 (349)
Q Consensus 156 ~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~---~i~~~~~~pv~vK~v------~---~~----~~a~ 219 (349)
|+..-. .. +.+.++++. .-.+.|++|+++-.. . .+ .-++
T Consensus 141 ~v~~Gs--~~-----------------------E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaR 195 (304)
T PRK06852 141 TIYLGS--EY-----------------------ESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAG 195 (304)
T ss_pred EEecCC--HH-----------------------HHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHH
Confidence 875310 00 011133333 334558999986322 1 11 2368
Q ss_pred HHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH-HHHH----HHHH-hCCCEEEEchHHH
Q 018919 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVF----KALA-LGASGIFIGRPVV 292 (349)
Q Consensus 220 ~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~----kal~-~GA~~V~ig~~~l 292 (349)
.+.+.|||.|.+--.+- .+....+.+.++.+.+ +.+||++.||=... +|++ .++. .||.+|.+||-+.
T Consensus 196 iaaELGADIVKv~y~~~----~~~g~~e~f~~vv~~~-g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIf 269 (304)
T PRK06852 196 VAACLGADFVKVNYPKK----EGANPAELFKEAVLAA-GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIH 269 (304)
T ss_pred HHHHHcCCEEEecCCCc----CCCCCHHHHHHHHHhC-CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhh
Confidence 89999999999842210 0011245666677665 36899999998853 3444 4667 8999999999654
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.25 Score=46.27 Aligned_cols=180 Identities=19% Similarity=0.205 Sum_probs=109.5
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+.-.+-.+.++-..+.+-+.+.|+.+++ + ++...+.+|..+ ... .+.++++.. .+....
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~ 81 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREA 81 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHH
Confidence 5667777554444556667888888888876654 2 334456665322 222 344555533 344567
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+.- |.. . + .+.+ ..+..+.+.+.+++|+++-..
T Consensus 82 i~~a~~a~~~Gad~v~v~p--P~y-----------~-~-----------~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg 136 (281)
T cd00408 82 IELARHAEEAGADGVLVVP--PYY-----------N-K-----------PSQEGIVAHFKAVADASDLPVILYNIPGRTG 136 (281)
T ss_pred HHHHHHHHHcCCCEEEECC--CcC-----------C-C-----------CCHHHHHHHHHHHHhcCCCCEEEEECccccC
Confidence 7888999999999998632 211 0 0 0112 256678888888999998654
Q ss_pred --cCHHHHHHHHHc-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 --LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 --~~~~~a~~a~~~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+++..+++.+. .+-+|.-+. .....+.++.+..++++.|+. |. ...+...+.+|+++.+.|.
T Consensus 137 ~~l~~~~~~~L~~~~~v~giK~s~----------~d~~~~~~~~~~~~~~~~v~~-G~---d~~~~~~l~~G~~G~i~~~ 202 (281)
T cd00408 137 VDLSPETIARLAEHPNIVGIKDSS----------GDLDRLTRLIALLGPDFAVLS-GD---DDLLLPALALGADGAISGA 202 (281)
T ss_pred CCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-cc---hHHHHHHHHcCCCEEEehH
Confidence 457888877762 123333221 234455555555544555553 32 5677888999999999997
Q ss_pred HHH
Q 018919 290 PVV 292 (349)
Q Consensus 290 ~~l 292 (349)
..+
T Consensus 203 ~n~ 205 (281)
T cd00408 203 ANV 205 (281)
T ss_pred Hhh
Confidence 543
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.057 Score=49.83 Aligned_cols=201 Identities=21% Similarity=0.204 Sum_probs=104.8
Q ss_pred CcceeEcCeecCcceee-cccccccccCChhhHHHHHHHHHcCCeEEecCC-CCCCHHHHHhhCCCceEEEEeecCChhH
Q 018919 60 DMNTTVLGFKISMPIMI-APTAMQKMAHPEGEYATARAASAAGTIMTLSSW-STSSVEEVASTGPGIRFFQLYVYKDRNV 137 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~i-Apm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~-~~~~~e~i~~~~~~~~~~Ql~~~~~~~~ 137 (349)
++-..+.+.....+.++ .|.+.- +.+--..+|+.+++.|+.++.+.. .+ +. .+.-||=. ..+-
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~vE---s~e~~~~~a~~~~~~g~~~~r~g~~kp-------Rt--s~~sf~G~---G~~g 67 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSIE---SYDHIRLAASSAKKLGYNYFRGGAYKP-------RT--SAASFQGL---GLQG 67 (250)
T ss_pred cceEEecCccCCCCcEEeccCccC---CHHHHHHHHHHHHHcCCCEEEecccCC-------CC--CCcccCCC---CHHH
Confidence 34444555555545444 444322 223345889999999998876432 11 11 22333311 2233
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCC-CcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe--cC
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP-PFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV--LT 214 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p-~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v--~~ 214 (349)
...+.+..++.|...+. ++-.+ +.-+.-..+ .+ -++..++ -...+.++.+.+ ++.||++|.- .+
T Consensus 68 l~~L~~~~~~~Gl~~~T-ev~d~----~~v~~~~e~-vdilqIgs~~------~~n~~LL~~va~-tgkPVilk~G~~~t 134 (250)
T PRK13397 68 IRYLHEVCQEFGLLSVS-EIMSE----RQLEEAYDY-LDVIQVGARN------MQNFEFLKTLSH-IDKPILFKRGLMAT 134 (250)
T ss_pred HHHHHHHHHHcCCCEEE-eeCCH----HHHHHHHhc-CCEEEECccc------ccCHHHHHHHHc-cCCeEEEeCCCCCC
Confidence 34444555566776653 11111 111111111 00 0000011 111466777665 5999999975 46
Q ss_pred HHH----HHHHHHcCCCEEEEecCCCCCCCCc---hhhHHHHHHHHHHhcCCCcEEEecCCCCHH-------HHHHHHHh
Q 018919 215 AED----ARIAVQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPVFLDGGVRRGT-------DVFKALAL 280 (349)
Q Consensus 215 ~~~----a~~a~~~G~d~I~v~~~gg~~~~~~---~~~~~~l~~i~~~~~~~ipvia~GGI~~~~-------dv~kal~~ 280 (349)
+++ ++...+.|..-|++--.|-+....- ...+..++.+++.. ++||+++-. +++. -...|+++
T Consensus 135 ~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~S-Hs~G~r~~v~~~a~AAvA~ 211 (250)
T PRK13397 135 IEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVS-HSTGRRDLLLPAAKIAKAV 211 (250)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECCC-CCCcccchHHHHHHHHHHh
Confidence 665 4455668887666643233221111 33456677776655 699999844 4333 35568889
Q ss_pred CCCEEEEchHH
Q 018919 281 GASGIFIGRPV 291 (349)
Q Consensus 281 GA~~V~ig~~~ 291 (349)
|||+++|-+-+
T Consensus 212 GAdGl~IE~H~ 222 (250)
T PRK13397 212 GANGIMMEVHP 222 (250)
T ss_pred CCCEEEEEecC
Confidence 99999998854
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0053 Score=56.92 Aligned_cols=71 Identities=27% Similarity=0.219 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.|+.-.+.|++.+.|---+| +.+...+.+.++++ + .+||-..||||+ +++.++|.+||+-|.+||..+.
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 3778999999999988754322 23445788888887 5 599999999997 9999999999999999997764
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.01 Score=58.72 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=66.0
Q ss_pred HHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecCCCCC---CCCchhhHHHHHHHHHHhc-------CCCcEEEe
Q 018919 197 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQ---LDYVPATIMALEEVVKATQ-------GRIPVFLD 265 (349)
Q Consensus 197 ~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~gg~~---~~~~~~~~~~l~~i~~~~~-------~~ipvia~ 265 (349)
..+|+..+--.+++.. -+.+++.+|.+.|+|+|.++.--.+. ....+-.++.+.++++.+. .++||++-
T Consensus 291 ~~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI 370 (437)
T PRK12290 291 ANLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI 370 (437)
T ss_pred hhhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEE
Confidence 3444443322344333 46789999999999999986422221 1122234566666655542 26999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 266 GGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 266 GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
||| +.+++.+.++.||++|.+=|+++.
T Consensus 371 GGI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 371 GGI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 999 779999999999999999999874
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0052 Score=54.39 Aligned_cols=81 Identities=28% Similarity=0.286 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 193 DEDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 193 ~~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.+.++.+++.++ +.+....+.+.+.+..+.++|+|+|...+ . ..+ +.+.++.. +++++. |+.|.
T Consensus 43 ~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~---~-------~~~-~~~~~~~~--~~~~i~--gv~t~ 107 (190)
T cd00452 43 LEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG---L-------DPE-VVKAANRA--GIPLLP--GVATP 107 (190)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC---C-------CHH-HHHHHHHc--CCcEEC--CcCCH
Confidence 567999999885 77777778899999999999999996421 1 112 22333333 567765 88999
Q ss_pred HHHHHHHHhCCCEEEEc
Q 018919 272 TDVFKALALGASGIFIG 288 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig 288 (349)
+++.+++.+|||.|.+-
T Consensus 108 ~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 108 TEIMQALELGADIVKLF 124 (190)
T ss_pred HHHHHHHHCCCCEEEEc
Confidence 99999999999999983
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.005 Score=58.08 Aligned_cols=87 Identities=25% Similarity=0.280 Sum_probs=67.7
Q ss_pred HHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 194 EDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 194 ~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+.++++|+.. ..||.| .+.+.++++.++++|+|.|.+.|- +.+.+.++.+.++.++.+-++|||.- +
T Consensus 197 ~av~~~r~~~~~~kIeV-Ev~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI~~-~ 264 (296)
T PRK09016 197 QAVEKAFWLHPDVPVEV-EVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNVTL-E 264 (296)
T ss_pred HHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCCCH-H
Confidence 4577777665 356554 578899999999999999998763 23566666666666899999999864 8
Q ss_pred HHHHHHHhCCCEEEEchHHH
Q 018919 273 DVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l 292 (349)
.+.++-..|+|.+.+|.+..
T Consensus 265 ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 265 TLREFAETGVDFISVGALTK 284 (296)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 88888889999999998654
|
|
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0076 Score=58.21 Aligned_cols=131 Identities=21% Similarity=0.215 Sum_probs=73.2
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCc-ccccCCCCCCchHHHHHHHHHhcCCcEEEEEec------
Q 018919 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT-LKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL------ 213 (349)
Q Consensus 141 ~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~-~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~------ 213 (349)
-++++.+.|++++-+++..- |+... +.. ....+...+..-++.+++|+++-.+.
T Consensus 111 sve~a~~~GAdAVk~lv~~~---------------~d~~~~~~~----~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~ 171 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYR---------------PDEDDAIND----RKHAFVERVGAECRANDIPFFLEPLTYDGKGS 171 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeC---------------CCcchHHHH----HHHHHHHHHHHHHHHcCCceEEEEeccCCCcc
Confidence 36788999999987776421 10000 000 00001233334445579998884321
Q ss_pred ----------CH----HHHHHHHH--cCCCEEEEecCCCC----CCC------CchhhHHHHHHHHHHhcCCCcEEE-ec
Q 018919 214 ----------TA----EDARIAVQ--AGAAGIIVSNHGAR----QLD------YVPATIMALEEVVKATQGRIPVFL-DG 266 (349)
Q Consensus 214 ----------~~----~~a~~a~~--~G~d~I~v~~~gg~----~~~------~~~~~~~~l~~i~~~~~~~ipvia-~G 266 (349)
.+ +-++.+.+ +|+|.+.+--.+.- ..+ ......+...++.+.. .+|++. +|
T Consensus 172 ~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsg 249 (340)
T PRK12858 172 DKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSA 249 (340)
T ss_pred ccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECC
Confidence 11 23566774 99999998522110 001 1111234566666654 577666 77
Q ss_pred CCCCHHHHHH----HHHhCC--CEEEEchHHHH
Q 018919 267 GVRRGTDVFK----ALALGA--SGIFIGRPVVY 293 (349)
Q Consensus 267 GI~~~~dv~k----al~~GA--~~V~ig~~~l~ 293 (349)
|. +.++..+ ++..|| ++|.+||....
T Consensus 250 G~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq 281 (340)
T PRK12858 250 GV-SPELFRRTLEFACEAGADFSGVLCGRATWQ 281 (340)
T ss_pred CC-CHHHHHHHHHHHHHcCCCccchhhhHHHHh
Confidence 76 6666655 556899 99999998754
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.026 Score=50.99 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=78.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEE---
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILV--- 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v--- 209 (349)
.+.....+.++++.+.|+.++.+ ++ .+.++++++..++|++.
T Consensus 24 ~~~~~i~~~a~~~~~~G~~~~~~--~~---------------------------------~~~~~~i~~~~~iPil~~~~ 68 (219)
T cd04729 24 HSPEIMAAMALAAVQGGAVGIRA--NG---------------------------------VEDIRAIRARVDLPIIGLIK 68 (219)
T ss_pred CcHHHHHHHHHHHHHCCCeEEEc--CC---------------------------------HHHHHHHHHhCCCCEEEEEe
Confidence 35567788899999999987652 22 25678888778999863
Q ss_pred EEe--------cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC
Q 018919 210 KGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 210 K~v--------~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G 281 (349)
|.. .+.++++.+.++|+|.|.+.....+ ...+....+.+.++++.. +++++. ++.+.+++.++..+|
T Consensus 69 ~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~~iiv--~v~t~~ea~~a~~~G 143 (219)
T cd04729 69 RDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NCLLMA--DISTLEEALNAAKLG 143 (219)
T ss_pred cCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CCeEEE--ECCCHHHHHHHHHcC
Confidence 332 1346899999999998877432111 011112334455555442 577776 689999999999999
Q ss_pred CCEEEEc
Q 018919 282 ASGIFIG 288 (349)
Q Consensus 282 A~~V~ig 288 (349)
+|.+.+.
T Consensus 144 ~d~i~~~ 150 (219)
T cd04729 144 FDIIGTT 150 (219)
T ss_pred CCEEEcc
Confidence 9998664
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0091 Score=54.60 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.++.+++..++||++-+ +.+++++.++.+.|+|+|.+.
T Consensus 164 ~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 164 PYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4668888887789998865 689999999999999999984
|
|
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.026 Score=51.12 Aligned_cols=163 Identities=17% Similarity=0.089 Sum_probs=87.4
Q ss_pred HHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch
Q 018919 114 VEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (349)
Q Consensus 114 ~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (349)
++++++..+ .+.+.-|-. .|...+... .+.++|++.+.+|..+. ...
T Consensus 47 i~~lk~~~~~~~v~~DLK~-~Di~~~v~~--~~~~~Gad~vTvH~~a~-----------------------------~~~ 94 (216)
T PRK13306 47 VRVLRALYPDKIIVADTKI-ADAGKILAK--MAFEAGADWVTVICAAH-----------------------------IPT 94 (216)
T ss_pred HHHHHHHCCCCEEEEEEee-cCCcHHHHH--HHHHCCCCEEEEeCCCC-----------------------------HHH
Confidence 556666544 334444432 355543332 36788999998876331 111
Q ss_pred -HHHHHHHHHhcCCcEEEEEe--cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCC
Q 018919 193 -DEDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 269 (349)
Q Consensus 193 -~~~i~~i~~~~~~pv~vK~v--~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 269 (349)
.+.++.+++ .+.-+.+-.. .+.+.++...+.|.+-+++.-.---++++.......+..+++..+.+..+.++|||+
T Consensus 95 i~~~~~~~~~-~g~~~~V~llts~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~ 173 (216)
T PRK13306 95 IKAALKVAKE-FNGEIQIELYGNWTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLV 173 (216)
T ss_pred HHHHHHHHHH-cCCEEEEEECCCCCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCC
Confidence 123444343 3443333222 345667666777776665531111123333333344455555443355699999999
Q ss_pred CHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018919 270 RGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 270 ~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~ 316 (349)
-.. +.+....|||.+.+|||+.. .+...+.++.++++++.
T Consensus 174 ~~~-~~~~~~~~ad~~VvGr~I~~------a~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 174 VED-LKLFKGIPVKTFIAGRAIRG------AADPAAAARAFKDEIAK 213 (216)
T ss_pred Hhh-HHHHhcCCCCEEEECCcccC------CCCHHHHHHHHHHHHHh
Confidence 532 22234459999999999653 22244566777777644
|
|
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0089 Score=53.20 Aligned_cols=97 Identities=14% Similarity=0.201 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
.+.+-.+.+..+.--.| .+.+.++..++++.|+..|-+.|..-..+... +.....+.+..+.++-+++-+||.|++
T Consensus 175 lk~l~k~~K~L~me~LV-EVn~~eEm~raleiGakvvGvNNRnL~sFeVD---lstTskL~E~i~kDvilva~SGi~tpd 250 (289)
T KOG4201|consen 175 LKELYKISKDLGMEPLV-EVNDEEEMQRALEIGAKVVGVNNRNLHSFEVD---LSTTSKLLEGIPKDVILVALSGIFTPD 250 (289)
T ss_pred HHHHHHHHHHcCCccee-eeccHHHHHHHHHhCcEEEeecCCccceeeec---hhhHHHHHhhCccceEEEeccCCCCHH
Confidence 44555556656543222 46788999999999999988876543322222 222334444455688999999999999
Q ss_pred HHHHHHHhCCCEEEEchHHHH
Q 018919 273 DVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~ 293 (349)
|+.++-..|..+|.+|..++.
T Consensus 251 Dia~~q~~GV~avLVGEslmk 271 (289)
T KOG4201|consen 251 DIAKYQKAGVKAVLVGESLMK 271 (289)
T ss_pred HHHHHHHcCceEEEecHHHHh
Confidence 999999999999999999986
|
|
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0076 Score=56.77 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=65.9
Q ss_pred HHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHH---hcCCCcEEEecCCC
Q 018919 194 EDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVR 269 (349)
Q Consensus 194 ~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~---~~~~ipvia~GGI~ 269 (349)
+.++++|+.. ..||.| .+.+.+++..++++|+|.|.+.|- . .+.+.++.+. .+.++.+.++|||.
T Consensus 188 ~ai~~~r~~~~~~kIeV-Ev~tl~ea~eal~~gaDiI~LDnm-------~---~e~vk~av~~~~~~~~~v~ieaSGGI~ 256 (289)
T PRK07896 188 AALRAVRAAAPDLPCEV-EVDSLEQLDEVLAEGAELVLLDNF-------P---VWQTQEAVQRRDARAPTVLLESSGGLT 256 (289)
T ss_pred HHHHHHHHhCCCCCEEE-EcCCHHHHHHHHHcCCCEEEeCCC-------C---HHHHHHHHHHHhccCCCEEEEEECCCC
Confidence 4577887765 356655 568999999999999999999763 1 3334444433 34578999999986
Q ss_pred CHHHHHHHHHhCCCEEEEchHHH
Q 018919 270 RGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 270 ~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+.+.++..+|+|.+.+|.++.
T Consensus 257 -~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 257 -LDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred -HHHHHHHHhcCCCEEEeChhhc
Confidence 4888888889999999998765
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.029 Score=50.75 Aligned_cols=115 Identities=16% Similarity=0.084 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV- 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v- 212 (349)
+++...++++.+.++|+.++.+ +. .+.++.+++.+++|++....
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~--~~---------------------------------~~~i~~i~~~~~~Pil~~~~~ 65 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRA--NG---------------------------------VEDIKAIRAVVDVPIIGIIKR 65 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEc--CC---------------------------------HHHHHHHHHhCCCCEEEEEec
Confidence 4456778888888899877653 21 36788888888999873321
Q ss_pred ----------cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 213 ----------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 213 ----------~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
.+.++++.+.++|+|.|++...-.... .+....+.+.++++. ..++++. ++.+.+++.++..+|+
T Consensus 66 d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p-~~~~~~~~i~~~~~~--~~i~vi~--~v~t~ee~~~a~~~G~ 140 (221)
T PRK01130 66 DYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRP-DGETLAELVKRIKEY--PGQLLMA--DCSTLEEGLAAQKLGF 140 (221)
T ss_pred CCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCC-CCCCHHHHHHHHHhC--CCCeEEE--eCCCHHHHHHHHHcCC
Confidence 235789999999999888753211000 011123444444432 3677774 5789999999999999
Q ss_pred CEEEEc
Q 018919 283 SGIFIG 288 (349)
Q Consensus 283 ~~V~ig 288 (349)
|.+.++
T Consensus 141 d~i~~~ 146 (221)
T PRK01130 141 DFIGTT 146 (221)
T ss_pred CEEEcC
Confidence 999774
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0041 Score=57.35 Aligned_cols=73 Identities=29% Similarity=0.202 Sum_probs=57.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+.++...+.|++.+.+.---+. .+.+...+.+.++.+.+ .+|+.++|||||.+|+.+++.+||+-|.+||..+
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 4455667788888877532221 13455678899998877 6999999999999999999999999999999755
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0086 Score=57.49 Aligned_cols=175 Identities=20% Similarity=0.146 Sum_probs=99.2
Q ss_pred HHHHHHHHcCCeEEecCCCCCCHHHHHhhC--CCceEEEEeecC-------ChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 92 ATARAASAAGTIMTLSSWSTSSVEEVASTG--PGIRFFQLYVYK-------DRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 92 ~la~aa~~~G~~~~~~~~~~~~~e~i~~~~--~~~~~~Ql~~~~-------~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
.+.+.+.+.|+..++.+.+. ++...... ..++++++-... .......-++.+.+.|++++.+|+..-.
T Consensus 95 ~~i~~a~~~g~dAv~~~~G~--l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs- 171 (348)
T PRK09250 95 NIVKLAIEAGCNAVASTLGV--LEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGS- 171 (348)
T ss_pred HHHHHHHhcCCCEEEeCHHH--HHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCC-
Confidence 46677777787766543221 22211111 134666654321 1122234477888899999998885310
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH---HHhcCCcEEEEEe------cC-------H----HHHHHHH
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL---QTITKLPILVKGV------LT-------A----EDARIAV 222 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i---~~~~~~pv~vK~v------~~-------~----~~a~~a~ 222 (349)
.. +.+.++++.++ .+.|++|+++=.. .+ + .-++.+.
T Consensus 172 -~~-----------------------E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaa 227 (348)
T PRK09250 172 -EE-----------------------SRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAA 227 (348)
T ss_pred -HH-----------------------HHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHH
Confidence 00 01113333333 3457999887322 11 1 1268899
Q ss_pred HcCCCEEEEecCCC----------CC------CCCchhhHHHHHHHHHHh-cCCCcEEEecCCCCH-HHH----HHH---
Q 018919 223 QAGAAGIIVSNHGA----------RQ------LDYVPATIMALEEVVKAT-QGRIPVFLDGGVRRG-TDV----FKA--- 277 (349)
Q Consensus 223 ~~G~d~I~v~~~gg----------~~------~~~~~~~~~~l~~i~~~~-~~~ipvia~GGI~~~-~dv----~ka--- 277 (349)
+.|||.|.+--.+. +. ........+.++.+.+.+ .+++||+..||=... +|+ ..+
T Consensus 228 ELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~ 307 (348)
T PRK09250 228 TIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVIN 307 (348)
T ss_pred HHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999853221 00 001112345566666665 347999999999853 333 356
Q ss_pred HHhCCCEEEEchHHHH
Q 018919 278 LALGASGIFIGRPVVY 293 (349)
Q Consensus 278 l~~GA~~V~ig~~~l~ 293 (349)
+..||.+|.+||-...
T Consensus 308 i~aGa~Gv~iGRNIfQ 323 (348)
T PRK09250 308 KRAGGMGLIIGRKAFQ 323 (348)
T ss_pred hhcCCcchhhchhhhc
Confidence 7789999999996553
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.24 Score=46.99 Aligned_cols=181 Identities=16% Similarity=0.129 Sum_probs=108.5
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe-----cCCCCCCHHHHHh-------hCC--CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-----~~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+.+-..+.|+.+++ |++...+.+|..+ ... -+.+.+... .+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHH
Confidence 47788888654444555556778888888876543 2334566666322 122 234555543 35556
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhc-CCcEEEEEe---
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTIT-KLPILVKGV--- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~-~~pv~vK~v--- 212 (349)
..++++.+++.|++++.+.- |.. .+. +.+ ..+..+.+.+.+ ++||++=.+
T Consensus 84 ai~~a~~A~~~Gad~v~v~p--P~y------------~~~-----------~~~~l~~~f~~ia~a~~~lpv~iYn~P~~ 138 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIV--PYY------------NKP-----------NQEALYDHFAEVADAVPDFPIIIYNIPGR 138 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcC--ccC------------CCC-----------CHHHHHHHHHHHHHhccCCCEEEEeCchh
Confidence 77888999999999987632 210 010 111 256688888888 899987654
Q ss_pred ----cCHHHHHHHHH--cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 213 ----LTAEDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 213 ----~~~~~a~~a~~--~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
.+++...++.+ -.+-+|.-+. ..+..+.++.+..+.++.|+. |. ...++.++.+||++.+
T Consensus 139 tg~~l~~~~l~~L~~~~pnv~giK~ss----------~d~~~~~~~~~~~~~~~~v~~-G~---d~~~~~~l~~Ga~G~i 204 (294)
T TIGR02313 139 AAQEIAPKTMARLRKDCPNIVGAKESN----------KDFEHLNHLFLEAGRDFLLFC-GI---ELLCLPMLAIGAAGSI 204 (294)
T ss_pred cCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-cc---hHHHHHHHHCCCCEEE
Confidence 35677777764 2344444321 123444455554444554543 31 2556678889999999
Q ss_pred EchHHH
Q 018919 287 IGRPVV 292 (349)
Q Consensus 287 ig~~~l 292 (349)
.|..-+
T Consensus 205 s~~~n~ 210 (294)
T TIGR02313 205 AATANV 210 (294)
T ss_pred ecHHhh
Confidence 988543
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.34 Score=45.70 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=75.6
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+.-. +.|+|.+-++. ||-+ .+.| .++.|.+|.+.+ ++|++.=||=..+ +++.|++.+|..-|
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~Ki 230 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPY---KGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKI 230 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCc---CCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4688887765 58999999874 4432 3333 578899998887 7999999988777 67778999999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|.+..+... .. ..-.....+.+++..+..|..+|..
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 231 NVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976543211 00 1223344556677777778777754
|
|
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.037 Score=52.06 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc---CCCcEEEecCC
Q 018919 193 DEDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 268 (349)
Q Consensus 193 ~~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI 268 (349)
.+.++.+|+..+ .+|.| .+.+.++++.++++|+|.|.+.|- . .+.+.++.+.++ .++.+-++|||
T Consensus 177 ~~av~~~r~~~~~~kIeV-Ev~tleqa~ea~~agaDiI~LDn~-------~---~e~l~~av~~~~~~~~~~~leaSGGI 245 (284)
T PRK06096 177 SGAINQLRRHAPEKKIVV-EADTPKEAIAALRAQPDVLQLDKF-------S---PQQATEIAQIAPSLAPHCTLSLAGGI 245 (284)
T ss_pred HHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCCCEEEECCC-------C---HHHHHHHHHHhhccCCCeEEEEECCC
Confidence 345777877653 44544 567999999999999999999653 2 344444444432 47899999998
Q ss_pred CCHHHHHHHHHhCCCEEEEchH
Q 018919 269 RRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~ 290 (349)
. .+.+.++...|+|.+.+|.+
T Consensus 246 ~-~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 246 N-LNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred C-HHHHHHHHhcCCCEEEECcc
Confidence 6 58888888899999999876
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.28 Score=46.12 Aligned_cols=182 Identities=15% Similarity=0.108 Sum_probs=105.7
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+-+++ + ++...+.+|..+ . .. .+.++++.. .+.+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS-NATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-ccHHH
Confidence 35667777544334445556777777788876654 2 223456555322 1 22 345555532 35566
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.++++.+++.|++++.+.- |.. . + .+++- .+..+.+.+.+++||++=..
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p--P~y-----------~-~-----------~~~~~i~~~~~~i~~~~~~pi~lYn~P~~t 136 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT--PYY-----------N-K-----------PTQEGLYQHFKAIAEEVDLPIILYNVPSRT 136 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC--CcC-----------C-C-----------CCHHHHHHHHHHHHhcCCCCEEEEECcHHh
Confidence 78889999999999998643 211 0 0 01122 56677888888999987654
Q ss_pred ---cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 ---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 ---~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+++..+++.+.. ..+-+ .++. ..+..+.++.+..++++.|+... ..-.+..+.+||++.+.|.
T Consensus 137 g~~l~~~~l~~L~~~~-~v~gi-------K~s~-~d~~~~~~l~~~~~~~~~v~~G~----d~~~~~~~~~G~~G~i~~~ 203 (285)
T TIGR00674 137 GVSLYPETVKRLAEEP-NIVAI-------KEAT-GNLERISEIKAIAPDDFVVLSGD----DALTLPMMALGGKGVISVT 203 (285)
T ss_pred cCCCCHHHHHHHHcCC-CEEEE-------EeCC-CCHHHHHHHHHhcCCCeEEEECc----hHHHHHHHHcCCCEEEehH
Confidence 4567777777643 22212 0111 12344555555554455555332 2456678899999999887
Q ss_pred HHH
Q 018919 290 PVV 292 (349)
Q Consensus 290 ~~l 292 (349)
..+
T Consensus 204 ~~~ 206 (285)
T TIGR00674 204 ANV 206 (285)
T ss_pred HHh
Confidence 654
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.021 Score=51.43 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=77.4
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEE--EEec-----
Q 018919 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILV--KGVL----- 213 (349)
Q Consensus 141 ~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v--K~v~----- 213 (349)
.++.+.++|++.+.+|..+.. ......++.+++ .+.++.+ +...
T Consensus 72 ~~~~~~~~gad~vtvh~e~g~----------------------------~~l~~~i~~~~~-~g~~~~v~~~~~~~~~~~ 122 (215)
T PRK13813 72 ICEAVFEAGAWGIIVHGFTGR----------------------------DSLKAVVEAAAE-SGGKVFVVVEMSHPGALE 122 (215)
T ss_pred HHHHHHhCCCCEEEEcCcCCH----------------------------HHHHHHHHHHHh-cCCeEEEEEeCCCCCCCC
Confidence 346677899999888765310 001234555554 4666644 2110
Q ss_pred C-----HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHhCCCEEEE
Q 018919 214 T-----AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFI 287 (349)
Q Consensus 214 ~-----~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~kal~~GA~~V~i 287 (349)
. ...++.+.+.|+++..+..+ ..+-+.++++..+.++.+ .+|||+... ++.+++..|||.+.+
T Consensus 123 ~~~~~~~~v~~m~~e~G~~g~~~~~~----------~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~ 191 (215)
T PRK13813 123 FIQPHADKLAKLAQEAGAFGVVAPAT----------RPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIV 191 (215)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEECCC----------cchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEE
Confidence 0 02245677899998876321 234455555554333444 999999863 677888899999999
Q ss_pred chHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 288 GRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 288 g~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
||+++.+ ....+.++.++++++
T Consensus 192 Gr~I~~~------~d~~~~~~~l~~~~~ 213 (215)
T PRK13813 192 GRSIYNA------ADPREAAKAINEEIR 213 (215)
T ss_pred CcccCCC------CCHHHHHHHHHHHHh
Confidence 9986531 124456666666654
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.078 Score=52.17 Aligned_cols=210 Identities=18% Similarity=0.132 Sum_probs=105.7
Q ss_pred ceeEcCeecCcceeecccccccccCCh-----hhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCC--
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPE-----GEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKD-- 134 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~-----~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~-- 134 (349)
..+|.++++++-|+.|||+.....+++ ...++-+.-++.|+.+++++....+... .....+...|+-...+
T Consensus 4 P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~--~~~~~~~~~~~~~~~~~~ 81 (382)
T cd02931 4 PIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEI--EQFPMPSLPCPTYNPTAF 81 (382)
T ss_pred CeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcc--cccCCCCccccccCCHHH
Confidence 367888999999999999632222222 2345555566678888776543221110 0000011112211111
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhH-Hhh--hhcCCCCcCcccccCCCCCC-ch-HHHHHHHHHhcCCcEEE
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREA-DIK--NRFTLPPFLTLKNFQGLDLG-KM-DEDVKWLQTITKLPILV 209 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~-d~~--~~~~~p~~~~~~~~~~~~~~-~~-~~~i~~i~~~~~~pv~v 209 (349)
.+...++++.+.+.|+.++ +-+.+. .|.... ... .....|..+..+.. ....+ .+ .++|+++.+.+
T Consensus 82 i~~~k~l~davh~~G~~i~-~QL~H~-~Gr~~~~~~~~~~~~~~ps~~~~~~~-~~~~p~~mt~~eI~~ii~~f------ 152 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIF-LQLTAG-FGRVCIPGFLGEDKPVAPSPIPNRWL-PEITCRELTTEEVETFVGKF------ 152 (382)
T ss_pred hHHHHHHHHHHHHcCCEEE-EEccCc-CCCccCccccCCCCccCCCCCCCCcC-CCCCCCcCCHHHHHHHHHHH------
Confidence 2345677777788898764 344321 011110 000 00000111000000 00112 23 56677777654
Q ss_pred EEecCHHHHHHHHHcCCCEEEEec-C-CCC--C-----------CCCch------hhHHHHHHHHHHhcCCCcEEE----
Q 018919 210 KGVLTAEDARIAVQAGAAGIIVSN-H-GAR--Q-----------LDYVP------ATIMALEEVVKATQGRIPVFL---- 264 (349)
Q Consensus 210 K~v~~~~~a~~a~~~G~d~I~v~~-~-gg~--~-----------~~~~~------~~~~~l~~i~~~~~~~ipvia---- 264 (349)
.+-|++|.++|+|+|-+.. | |.- | -++|. -.++.+.+|++.++.+++|..
T Consensus 153 -----~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~ 227 (382)
T cd02931 153 -----GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSV 227 (382)
T ss_pred -----HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 3668999999999999975 4 431 1 11331 134666667766654555544
Q ss_pred ------------------ecCCCCHHH---HHHHHH-hCCCEEEEc
Q 018919 265 ------------------DGGVRRGTD---VFKALA-LGASGIFIG 288 (349)
Q Consensus 265 ------------------~GGI~~~~d---v~kal~-~GA~~V~ig 288 (349)
.||. +.+| +++.|+ .|+|.+-+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~g~-~~e~~~~~~~~l~~~gvD~l~vs 272 (382)
T cd02931 228 KSYIKDLRQGALPGEEFQEKGR-DLEEGLKAAKILEEAGYDALDVD 272 (382)
T ss_pred hhhccccccccccccccccCCC-CHHHHHHHHHHHHHhCCCEEEeC
Confidence 2232 3344 556665 799999875
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.35 Score=45.40 Aligned_cols=107 Identities=26% Similarity=0.366 Sum_probs=73.2
Q ss_pred cCHHHHHHHHH-cCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHhCCCEE
Q 018919 213 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~~-~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~kal~~GA~~V 285 (349)
.+|++|+...+ .|+|.+-++. ||... .+.+ .++.|.++.+.+ ++|++.=||=..+. ++.+++..|..-|
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~--~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 223 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYK--GGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKI 223 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 45888877664 7999999874 55432 1133 578999999988 79999999888875 4778999999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGC 323 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~ 323 (349)
=++|.+..+... .. ..-.....+.+.+.++..|..+|.
T Consensus 224 Ni~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 224 NINTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999987654321 00 011233344556666666666654
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.29 Score=46.18 Aligned_cols=107 Identities=19% Similarity=0.289 Sum_probs=71.6
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+.-. +.|+|.+-++. ||-+ .+.| .++.|.+|.+.+ ++|++.=||=..+ +++.|++.+|..-|
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK09195 155 TDPAQAREFVEATGIDSLAVAIGTAHGMY---KGEPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence 4678887765 58999999874 5543 2322 578899999887 6888877665444 56777999999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|.+..+... .. ..-.....+.+++..+..|+.+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 230 NVATELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543210 00 0113334455666667777777643
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0087 Score=66.84 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=88.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-----cCCCcEEE-ecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvia-~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
++|..|++.|+..|++|..+-.......|.+-++..+..++ +.++.||+ +|.+++.-|++..+..||++|--.-
T Consensus 601 ~~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYL 680 (1485)
T PRK11750 601 DEAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYL 680 (1485)
T ss_pred HHHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHH
Confidence 45788899999999998764321122345566666666554 34677888 8999999999999999999995444
Q ss_pred HHH--HHHhhcC------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 290 PVV--YSLAAEG------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 290 ~~l--~~~~~~G------~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
++- ..+...| .+.+.++++.+.++|.+.|..+|.++++.-++..+.
T Consensus 681 A~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiF 734 (1485)
T PRK11750 681 AYETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLF 734 (1485)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcccc
Confidence 432 1111223 356789999999999999999999999888776553
|
|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.17 Score=49.43 Aligned_cols=206 Identities=21% Similarity=0.207 Sum_probs=109.0
Q ss_pred CCCCcceeEcCeecC--cc-eeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecC
Q 018919 57 SKIDMNTTVLGFKIS--MP-IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYK 133 (349)
Q Consensus 57 ~~~d~s~~l~g~~~~--~P-i~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~ 133 (349)
..-++.+.+.+..+. .| ++++|-.. -+.+.-...|+.+.+.|+.+...... . -+. .+..||=.
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~iaGpc~i---E~~~~~~~~A~~lk~~g~~~~r~~~~-k-----pRt--sp~~f~g~--- 166 (360)
T PRK12595 101 KPEDTIVDVKGEVIGDGNQSFIFGPCSV---ESYEQVEAVAKALKAKGLKLLRGGAF-K-----PRT--SPYDFQGL--- 166 (360)
T ss_pred CCCCCEEEECCEEecCCCeeeEEecccc---cCHHHHHHHHHHHHHcCCcEEEcccc-C-----CCC--CCccccCC---
Confidence 344555556555442 34 44555322 12334457888889999887653210 0 011 23334321
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v 212 (349)
..+....+.+.+++.|...+. ++-. .+.-++-..+ ++- ++... +-..++.++.+.+ ++.||++|.-
T Consensus 167 ~~e~l~~L~~~~~~~Gl~~~t-~v~d----~~~~~~l~~~-vd~lkI~s~------~~~n~~LL~~~a~-~gkPVilk~G 233 (360)
T PRK12595 167 GVEGLKILKQVADEYGLAVIS-EIVN----PADVEVALDY-VDVIQIGAR------NMQNFELLKAAGR-VNKPVLLKRG 233 (360)
T ss_pred CHHHHHHHHHHHHHcCCCEEE-eeCC----HHHHHHHHHh-CCeEEECcc------cccCHHHHHHHHc-cCCcEEEeCC
Confidence 234444455556677877653 1111 1111111111 110 01111 1111466777765 6999999986
Q ss_pred c--CHHHHH----HHHHcCCCEEEEecCCCCCCC---CchhhHHHHHHHHHHhcCCCcEEEecCCCCH----H--HHHHH
Q 018919 213 L--TAEDAR----IAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVFLDGGVRRG----T--DVFKA 277 (349)
Q Consensus 213 ~--~~~~a~----~a~~~G~d~I~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~----~--dv~ka 277 (349)
+ ++++.. ...+.|.+-|++--+|-+... .....+..+..+++.. ++||+.|.+=..| . -...|
T Consensus 234 ~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~PV~~d~~Hs~G~r~~~~~~a~aA 311 (360)
T PRK12595 234 LSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HLPVMVDVTHSTGRRDLLLPTAKAA 311 (360)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CCCEEEeCCCCCcchhhHHHHHHHH
Confidence 4 776644 445678876766533433211 1123677888887765 6999996542232 1 33457
Q ss_pred HHhCCCEEEEchHH
Q 018919 278 LALGASGIFIGRPV 291 (349)
Q Consensus 278 l~~GA~~V~ig~~~ 291 (349)
+++|||+++|-+-+
T Consensus 312 va~GAdg~~iE~H~ 325 (360)
T PRK12595 312 LAIGADGVMAEVHP 325 (360)
T ss_pred HHcCCCeEEEEecC
Confidence 88999999999876
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0073 Score=54.82 Aligned_cols=80 Identities=18% Similarity=0.121 Sum_probs=56.9
Q ss_pred HHHHHHHHHhc-----CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecC
Q 018919 193 DEDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 267 (349)
Q Consensus 193 ~~~i~~i~~~~-----~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 267 (349)
.+.++.+++.+ ++-|.+..|.+.++++.+.++|+++++--+. +.+.+.... .. ++|++ -|
T Consensus 54 ~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~----------~~~v~~~~~-~~--~i~~i--PG 118 (222)
T PRK07114 54 HEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPLF----------NPDIAKVCN-RR--KVPYS--PG 118 (222)
T ss_pred HHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHH-Hc--CCCEe--CC
Confidence 45566665433 3567788889999999999999999964211 122232222 22 56666 89
Q ss_pred CCCHHHHHHHHHhCCCEEEE
Q 018919 268 VRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 268 I~~~~dv~kal~~GA~~V~i 287 (349)
+.|+.++..|+.+||+.|=+
T Consensus 119 ~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 119 CGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCHHHHHHHHHCCCCEEEE
Confidence 99999999999999998854
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0043 Score=59.12 Aligned_cols=77 Identities=22% Similarity=0.226 Sum_probs=58.6
Q ss_pred ecCHHHHHHHHHcCCCEEEEecCCCCCC--CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+-+.+++..|.+.|+|+|.++--..+.. +..+..++.+.++++.. ++||++-||| +.+++...+++||++|.+-+
T Consensus 233 ~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~ 309 (312)
T PRK08999 233 CHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIR 309 (312)
T ss_pred cCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEE
Confidence 3578889999999999999875332211 11122367777777665 7999999999 88999999999999998876
Q ss_pred HH
Q 018919 290 PV 291 (349)
Q Consensus 290 ~~ 291 (349)
.+
T Consensus 310 ~~ 311 (312)
T PRK08999 310 GL 311 (312)
T ss_pred Ee
Confidence 53
|
|
| >KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.06 Score=47.57 Aligned_cols=148 Identities=26% Similarity=0.306 Sum_probs=88.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc--ccCCCCC-Cc--h-HHHHHHHHHh-cCCc
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQGLDL-GK--M-DEDVKWLQTI-TKLP 206 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~~~~-~~--~-~~~i~~i~~~-~~~p 206 (349)
|.+.+...++-+...|.+.|++.+....+ +.++.++. +-..+.+ -. . ++.+++.|.+ ..+|
T Consensus 30 ~v~~T~kilkglq~gG~dIIELGvPfSDp------------~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~P 97 (268)
T KOG4175|consen 30 DVSTTAKILKGLQSGGSDIIELGVPFSDP------------LADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCP 97 (268)
T ss_pred cHHHHHHHHHHHhcCCcCeEEecCccCcc------------ccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccc
Confidence 45567788888888999999976632110 00111110 0000111 11 1 5678888777 5789
Q ss_pred EEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCCC---------C----------CC-----
Q 018919 207 ILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR---------Q----------LD----- 240 (349)
Q Consensus 207 v~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg~---------~----------~~----- 240 (349)
|++-+.-+| .....+.++|+.+.++-. ||-. . -|
T Consensus 98 IiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYv 177 (268)
T KOG4175|consen 98 IILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYV 177 (268)
T ss_pred eeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEE
Confidence 988776443 346778889998887641 1110 0 00
Q ss_pred ------Cc-hhh-----HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHH
Q 018919 241 ------YV-PAT-----IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 241 ------~~-~~~-----~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
.| ..+ -+.+.+++++. ++.|+...-||.+++++...=.- ||+|.+|+.++.-+
T Consensus 178 VSrmG~TG~~~svn~~l~~L~qrvrk~t-~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~l~ 242 (268)
T KOG4175|consen 178 VSRMGVTGTRESVNEKLQSLLQRVRKAT-GDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVKLL 242 (268)
T ss_pred EEeccccccHHHHHHHHHHHHHHHHHhc-CCCceeEeeccCCHHHHHhhhhh-ccceEecHHHHHHh
Confidence 11 111 13344444443 47999999999999998654444 99999999987643
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.036 Score=51.15 Aligned_cols=164 Identities=23% Similarity=0.206 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCeEEecCCCCCCHHHHHhh-C-CCceEEEEeec-----CC-hhHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 92 ATARAASAAGTIMTLSSWSTSSVEEVAST-G-PGIRFFQLYVY-----KD-RNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 92 ~la~aa~~~G~~~~~~~~~~~~~e~i~~~-~-~~~~~~Ql~~~-----~~-~~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
.+.+.+.+.|+..+..+.+. ..-+... . ..++++++-.. .+ .......++.+...|++++..|+..-..
T Consensus 47 ~~v~~v~~~g~dav~~~~G~--~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse- 123 (265)
T COG1830 47 NIVAKVAEAGADAVAMTPGI--ARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSE- 123 (265)
T ss_pred HHHHHHHhcCCCEEEecHhH--HhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCc-
Confidence 46667777787766544321 1111111 1 13455555321 11 1112234566778899999888853110
Q ss_pred chhHHhhhhcCCCCcCcccccCCCCCCchHH---HHHHHHHhcCCcEEEEEe-----------cCH----HHHHHHHHcC
Q 018919 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDE---DVKWLQTITKLPILVKGV-----------LTA----EDARIAVQAG 225 (349)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~---~i~~i~~~~~~pv~vK~v-----------~~~----~~a~~a~~~G 225 (349)
.+.+..+ .+..-...+++|+++-.. .++ .-++.+.+.|
T Consensus 124 ------------------------~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelG 179 (265)
T COG1830 124 ------------------------TEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELG 179 (265)
T ss_pred ------------------------chHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhc
Confidence 0111123 334444557999887321 112 2257899999
Q ss_pred CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC-HHH-H----HHHHHhCCCEEEEchHHHH
Q 018919 226 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTD-V----FKALALGASGIFIGRPVVY 293 (349)
Q Consensus 226 ~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~-~~d-v----~kal~~GA~~V~ig~~~l~ 293 (349)
||.|.+.=.| ..+...++.+.+ .+||+..||=.. .++ + ..++..||.++.+||=++.
T Consensus 180 ADIiK~~ytg---------~~e~F~~vv~~~--~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ 242 (265)
T COG1830 180 ADIIKTKYTG---------DPESFRRVVAAC--GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQ 242 (265)
T ss_pred CCeEeecCCC---------ChHHHHHHHHhC--CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhc
Confidence 9999883211 125666777777 499999999988 322 2 2466789999999996653
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0097 Score=55.04 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=75.6
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhh---C-C-CceEEEEeecCChhHHHHHHHHH
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST---G-P-GIRFFQLYVYKDRNVVAQLVRRA 145 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~---~-~-~~~~~Ql~~~~~~~~~~~~~~~~ 145 (349)
+.|++ =|++....-.-+...+.+.|+++|+.+++= --.++||..+. . . +.-.+++..+..++ +.++++
T Consensus 78 ~~p~i--lm~Y~N~i~~~G~~~F~~~~~~aGv~Gvii--pDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~---~ri~~i 150 (250)
T PLN02591 78 SCPIV--LFTYYNPILKRGIDKFMATIKEAGVHGLVV--PDLPLEETEALRAEAAKNGIELVLLTTPTTPT---ERMKAI 150 (250)
T ss_pred CCCEE--EEecccHHHHhHHHHHHHHHHHcCCCEEEe--CCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCH---HHHHHH
Confidence 34654 355443222235668899999999887751 22355554322 1 1 44455555443332 233333
Q ss_pred HHcCCCEEE-EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHH
Q 018919 146 ERAGFKAIA-LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG-VLTAEDARIAV 222 (349)
Q Consensus 146 ~~~G~~~i~-i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~ 222 (349)
.+..-..|. +.. ..+.|.|. ..+.. .+.++++|+.+++|+++.. +.++++++.+.
T Consensus 151 a~~~~gFIY~Vs~-~GvTG~~~---------------------~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~ 208 (250)
T PLN02591 151 AEASEGFVYLVSS-TGVTGARA---------------------SVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIA 208 (250)
T ss_pred HHhCCCcEEEeeC-CCCcCCCc---------------------CCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHH
Confidence 333222232 221 11111110 01222 4569999998999999865 57799999999
Q ss_pred HcCCCEEEEec
Q 018919 223 QAGAAGIIVSN 233 (349)
Q Consensus 223 ~~G~d~I~v~~ 233 (349)
+.|+|+++|..
T Consensus 209 ~~GADGvIVGS 219 (250)
T PLN02591 209 GWGADGVIVGS 219 (250)
T ss_pred hcCCCEEEECH
Confidence 99999999954
|
|
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.011 Score=55.61 Aligned_cols=87 Identities=24% Similarity=0.319 Sum_probs=66.4
Q ss_pred HHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 194 EDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 194 ~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+.++++|+... .+|.| .+.+.++++.++++|+|.|.+.|- +.+.+.++.+.++.++.+-++|||. .+
T Consensus 194 ~av~~~r~~~~~~kIeV-Evetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGIt-~~ 261 (294)
T PRK06978 194 AALDAAFALNAGVPVQI-EVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGVN-FD 261 (294)
T ss_pred HHHHHHHHhCCCCcEEE-EcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCCC-HH
Confidence 34667766432 44544 467999999999999999999764 3455666666666678999999986 58
Q ss_pred HHHHHHHhCCCEEEEchHHH
Q 018919 273 DVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l 292 (349)
.+.++...|+|.+.+|....
T Consensus 262 ni~~yA~tGVD~IS~galth 281 (294)
T PRK06978 262 TVRAFAETGVDRISIGALTK 281 (294)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 88888889999999998654
|
|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.09 Score=46.19 Aligned_cols=155 Identities=23% Similarity=0.184 Sum_probs=92.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCc--EEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLP--ILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~p--v~v 209 (349)
.|..-..+..+++.++|++++-+++=-. .| +| +-.+ --.++.+|+.++.| +=+
T Consensus 14 ~dfanL~~e~~~~l~~GadwlHlDVMDg-----------~F-Vp------------NiT~G~pvV~slR~~~~~~~ffD~ 69 (224)
T KOG3111|consen 14 SDFANLAAECKKMLDAGADWLHLDVMDG-----------HF-VP------------NITFGPPVVESLRKHTGADPFFDV 69 (224)
T ss_pred cchHHHHHHHHHHHHcCCCeEEEeeecc-----------cc-cC------------CcccchHHHHHHHhccCCCcceeE
Confidence 4555667788899999999986654110 11 11 1122 34677788776655 212
Q ss_pred E-EecCHHH-HHHHHHcCCCEEEEecC------------------------CCCC----------CC-----------Cc
Q 018919 210 K-GVLTAED-ARIAVQAGAAGIIVSNH------------------------GARQ----------LD-----------YV 242 (349)
Q Consensus 210 K-~v~~~~~-a~~a~~~G~d~I~v~~~------------------------gg~~----------~~-----------~~ 242 (349)
- .+.+|++ +....++||+.+++.-. .|++ +| +|
T Consensus 70 HmMV~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGG 149 (224)
T KOG3111|consen 70 HMMVENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGG 149 (224)
T ss_pred EEeecCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCch
Confidence 2 2456654 56677788887777410 1221 01 23
Q ss_pred hhhH-HHHHHHHHHh--cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 018919 243 PATI-MALEEVVKAT--QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 318 (349)
Q Consensus 243 ~~~~-~~l~~i~~~~--~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m 318 (349)
..-. +.++++.... ..+..|=.|||+.. +.+-++.++||+++..|++.+.+ ..-.+++..++++.....
T Consensus 150 QkFme~mm~KV~~lR~kyp~l~ievDGGv~~-~ti~~~a~AGAN~iVaGsavf~a------~d~~~vi~~lr~~v~~a~ 221 (224)
T KOG3111|consen 150 QKFMEDMMPKVEWLREKYPNLDIEVDGGVGP-STIDKAAEAGANMIVAGSAVFGA------ADPSDVISLLRNSVEKAA 221 (224)
T ss_pred hhhHHHHHHHHHHHHHhCCCceEEecCCcCc-chHHHHHHcCCCEEEecceeecC------CCHHHHHHHHHHHHhhhh
Confidence 3222 3344432211 12566669999865 88889999999999999998742 233467788887766543
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.5 Score=44.73 Aligned_cols=184 Identities=13% Similarity=0.065 Sum_probs=109.0
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+++-..+.|+.+++ + ++...+.+|..+ ... .+.++++- .+.+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 46777787544434555666888888889977654 3 234456665322 222 35667763 24666
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe----c
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV----L 213 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v----~ 213 (349)
..++++.+++.|++++.+.- |.. . +. .+....+..+.+.+.+++||++=.. .
T Consensus 88 ai~~a~~a~~~Gadav~~~p--P~y-----------~-~~----------s~~~i~~~f~~v~~a~~~pvilYn~~g~~l 143 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLP--PYL-----------I-NG----------EQEGLYAHVEAVCESTDLGVIVYQRDNAVL 143 (296)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCC-----------C-CC----------CHHHHHHHHHHHHhccCCCEEEEeCCCCCC
Confidence 77888899999999987622 210 0 10 0111255677777778999887542 4
Q ss_pred CHHHHHHHHH-c-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 214 TAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 214 ~~~~a~~a~~-~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
+++...++.+ . .+-+|.-+ ..++..+.++.+..++++.|+...+. ....+..++.+||++++.|..-
T Consensus 144 ~~~~~~~La~~~~nvvgiKds----------~~d~~~~~~~~~~~~~~~~v~~G~~~-~d~~~~~~~~~Ga~G~is~~~n 212 (296)
T TIGR03249 144 NADTLERLADRCPNLVGFKDG----------IGDMEQMIEITQRLGDRLGYLGGMPT-AEVTAPAYLPLGVTSYSSAIFN 212 (296)
T ss_pred CHHHHHHHHhhCCCEEEEEeC----------CCCHHHHHHHHHHcCCCeEEEeCCCc-chhhHHHHHhCCCCEEEecHHH
Confidence 6787777765 2 34444432 11344555555555445544432211 1234567788999999988754
Q ss_pred H
Q 018919 292 V 292 (349)
Q Consensus 292 l 292 (349)
+
T Consensus 213 ~ 213 (296)
T TIGR03249 213 F 213 (296)
T ss_pred h
Confidence 3
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.3 Score=45.81 Aligned_cols=181 Identities=18% Similarity=0.172 Sum_probs=106.6
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~ 137 (349)
.|..+.|+.-..-.+.++-..+.+-+.+.|+.+++ + ++...+.+|..+ ... .+.++++.. .+.+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHH
Confidence 36677777544444555666788888888976554 2 223456665322 222 245556543 35667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.++++.+++.|++++.+.- |.. . + .+.+ ..+..+.+.+.+++||++=..
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~--P~~-----------~-~-----------~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~ 138 (284)
T cd00950 84 AIELTKRAEKAGADAALVVT--PYY-----------N-K-----------PSQEGLYAHFKAIAEATDLPVILYNVPGRT 138 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcc--ccc-----------C-C-----------CCHHHHHHHHHHHHhcCCCCEEEEEChhHh
Confidence 78899999999999987632 210 0 1 0111 256677777778999987553
Q ss_pred ---cCHHHHHHHHHc-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 ---LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 ---~~~~~a~~a~~~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++..+++.+. .+-+|.-+. .+...+.++.+..++++.|+ +|. ...+..++.+|+++.+.|
T Consensus 139 g~~ls~~~~~~L~~~p~v~giK~s~----------~~~~~~~~~~~~~~~~~~v~-~G~---d~~~~~~~~~G~~G~~s~ 204 (284)
T cd00950 139 GVNIEPETVLRLAEHPNIVGIKEAT----------GDLDRVSELIALCPDDFAVL-SGD---DALTLPFLALGGVGVISV 204 (284)
T ss_pred CCCCCHHHHHHHhcCCCEEEEEECC----------CCHHHHHHHHHhCCCCeEEE-eCC---hHhHHHHHHCCCCEEEeh
Confidence 456777777654 122333211 12334445555554456554 331 245667888999999988
Q ss_pred hHHH
Q 018919 289 RPVV 292 (349)
Q Consensus 289 ~~~l 292 (349)
...+
T Consensus 205 ~~n~ 208 (284)
T cd00950 205 AANV 208 (284)
T ss_pred HHHh
Confidence 8643
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.014 Score=53.26 Aligned_cols=83 Identities=17% Similarity=0.001 Sum_probs=61.2
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQT 201 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~ 201 (349)
.|.++.+-...+...+.+.++.++++|+++|.|+...+ + .+.. |+.|+++++
T Consensus 135 ~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~-----------------g----------~~~a~~~~I~~i~~ 187 (231)
T TIGR00736 135 KPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYP-----------------G----------KPYADMDLLKILSE 187 (231)
T ss_pred CcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCC-----------------C----------CchhhHHHHHHHHH
Confidence 46677765543444567889999999999987642111 0 1113 899999999
Q ss_pred hcC-CcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 202 ITK-LPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 202 ~~~-~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
..+ +||+.-+ +.+.++|++.+++|||+|.+.
T Consensus 188 ~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 188 EFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred hcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 884 9987544 689999999999999999884
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.029 Score=52.31 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++++|+.++.|+.+.. +.++|+++.+.++|||++++..
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 5669999998999999875 5779999999999999999953
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.41 Score=45.06 Aligned_cols=180 Identities=21% Similarity=0.214 Sum_probs=104.4
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHH-------hh-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~-------~~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+.-..-.+.+.-..+++-..+.|+.+++ ++ +.+.+.+|.. +. .+ .+.++++-. .+.+.+
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGA-NSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES-SSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcc-hhHHHH
Confidence 5566676443333444445777778888887654 22 2345665532 22 22 346667543 466778
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+.- |.. . + .+.+ ..+..+.+.+.+++||++=..
T Consensus 86 i~~a~~a~~~Gad~v~v~~--P~~-----------~-~-----------~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg 140 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP--PYY-----------F-K-----------PSQEELIDYFRAIADATDLPIIIYNNPARTG 140 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE--STS-----------S-S-----------CCHHHHHHHHHHHHHHSSSEEEEEEBHHHHS
T ss_pred HHHHHHHhhcCceEEEEec--ccc-----------c-c-----------chhhHHHHHHHHHHhhcCCCEEEEECCCccc
Confidence 8899999999999998744 211 0 0 0111 256678888888999998664
Q ss_pred --cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 --LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 --~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+++...++.+.. +-++..++ .++..+.++.+...+++.|+ .| ....+..++.+|+++++.+.
T Consensus 141 ~~ls~~~l~~L~~~~nv~giK~s~----------~~~~~~~~~~~~~~~~~~v~-~G---~d~~~~~~l~~G~~G~is~~ 206 (289)
T PF00701_consen 141 NDLSPETLARLAKIPNVVGIKDSS----------GDLERLIQLLRAVGPDFSVF-CG---DDELLLPALAAGADGFISGL 206 (289)
T ss_dssp STSHHHHHHHHHTSTTEEEEEESS----------SBHHHHHHHHHHSSTTSEEE-ES---SGGGHHHHHHTTSSEEEESG
T ss_pred cCCCHHHHHHHhcCCcEEEEEcCc----------hhHHHHHHHhhhcccCeeee-cc---ccccccccccccCCEEEEcc
Confidence 2456677776622 22222211 12344555555555566555 44 44557889999999999998
Q ss_pred HHH
Q 018919 290 PVV 292 (349)
Q Consensus 290 ~~l 292 (349)
+.+
T Consensus 207 ~n~ 209 (289)
T PF00701_consen 207 ANV 209 (289)
T ss_dssp GGT
T ss_pred ccc
Confidence 643
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.016 Score=52.14 Aligned_cols=80 Identities=24% Similarity=0.220 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC
Q 018919 193 DEDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270 (349)
Q Consensus 193 ~~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 270 (349)
.+.|+.++++++ +.|.+..+.+.++++.+.++|+|+++..+. ..+.+ +.+... +++++. |+.|
T Consensus 49 ~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~----------~~~v~-~~~~~~--~~~~~~--G~~t 113 (206)
T PRK09140 49 FDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT----------DPEVI-RRAVAL--GMVVMP--GVAT 113 (206)
T ss_pred HHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC----------CHHHH-HHHHHC--CCcEEc--ccCC
Confidence 567999998885 456777789999999999999999966211 11222 222222 455553 3999
Q ss_pred HHHHHHHHHhCCCEEEE
Q 018919 271 GTDVFKALALGASGIFI 287 (349)
Q Consensus 271 ~~dv~kal~~GA~~V~i 287 (349)
++++.++..+|||.|.+
T Consensus 114 ~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 114 PTEAFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999987
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.02 Score=55.15 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+.++.++++|+|.|.++.+.|.. ....+.+.++++..+ ++||++ |.+.+.+++.+++.+|||+|.+|
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 366888999999999987543311 234567777777653 588887 99999999999999999999984
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd00439 Transaldolase Transaldolase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.17 Score=46.89 Aligned_cols=141 Identities=11% Similarity=0.005 Sum_probs=89.4
Q ss_pred CCceEEEEee--cCChhHHHHHHHHHHHcCC-CEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHH
Q 018919 122 PGIRFFQLYV--YKDRNVVAQLVRRAERAGF-KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKW 198 (349)
Q Consensus 122 ~~~~~~Ql~~--~~~~~~~~~~~~~~~~~G~-~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~ 198 (349)
++...+|+.+ ..|.+.+.+.++++.+..- +-+.|.+..... | .+.++.
T Consensus 84 ~G~Vs~ev~~~~~~d~~~mi~~A~~l~~~~~~~nv~IKIPaT~~---------------G--------------l~A~~~ 134 (252)
T cd00439 84 DGRVSVEVSARLADDTQGMVEAAKYLSKVVNRRNIYIKIPATAE---------------G--------------IPAIKD 134 (252)
T ss_pred CCeEEEEEeccccCCHHHHHHHHHHHHHhcCcccEEEEeCCCHH---------------H--------------HHHHHH
Confidence 3566778754 1455666666666665532 345555533210 0 356677
Q ss_pred HHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEec-----CCCCCC-----C-CchhhHHHHHHHHHHh---cCCCcEEE
Q 018919 199 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQL-----D-YVPATIMALEEVVKAT---QGRIPVFL 264 (349)
Q Consensus 199 i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~-----~gg~~~-----~-~~~~~~~~l~~i~~~~---~~~ipvia 264 (349)
+.+. ++++-+-.+.+.+.+..|.++|++.|...- +|..++ + .+.+.+..+.++.+.. +.+..|++
T Consensus 135 L~~~-GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tkiL~ 213 (252)
T cd00439 135 LIAA-GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRVLW 213 (252)
T ss_pred HHHC-CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCeEEE
Confidence 7654 899999899999999999999999987641 122110 0 0113445555555443 23556655
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHHHHH
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
.+ +++..++.+++ |++.|-+....+..+
T Consensus 214 AS-~r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 214 AS-FSDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred Ee-eCCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 55 89999997765 999999998887654
|
Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.023 Score=50.73 Aligned_cols=124 Identities=20% Similarity=0.325 Sum_probs=74.4
Q ss_pred eecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcE
Q 018919 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPI 207 (349)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv 207 (349)
|...+.+.+.+.++.+.+.|++++++..=.+ |... .+.++++.+.. +.|+
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~----------------------------dg~iD~~~~~~Li~~a~~~~~ 117 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTE----------------------------DGEIDEEALEELIEAAGGMPV 117 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BET----------------------------TSSB-HHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECC----------------------------CCCcCHHHHHHHHHhcCCCeE
Confidence 4434445677888889999999998654211 1112 45566665554 6777
Q ss_pred EEEEe----cCHHH-HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hC
Q 018919 208 LVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LG 281 (349)
Q Consensus 208 ~vK~v----~~~~~-a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~G 281 (349)
..--. .+++. .+.+.+.|++.|-.|+... .....++.|.++.+..++++.|++.|||+. +.+.+.++ .|
T Consensus 118 tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~----~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~-~nv~~l~~~tg 192 (201)
T PF03932_consen 118 TFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAP----TALEGIENLKELVEQAKGRIEIMPGGGVRA-ENVPELVEETG 192 (201)
T ss_dssp EE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSS----STTTCHHHHHHHHHHHTTSSEEEEESS--T-TTHHHHHHHHT
T ss_pred EEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCC----CHHHHHHHHHHHHHHcCCCcEEEecCCCCH-HHHHHHHHhhC
Confidence 76542 34444 4667899999997754321 122235667777666667899999999987 67777777 88
Q ss_pred CCEEE
Q 018919 282 ASGIF 286 (349)
Q Consensus 282 A~~V~ 286 (349)
+..+=
T Consensus 193 ~~~~H 197 (201)
T PF03932_consen 193 VREIH 197 (201)
T ss_dssp -SEEE
T ss_pred CeEEe
Confidence 87663
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.01 Score=60.80 Aligned_cols=76 Identities=24% Similarity=0.218 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCCEEEEecCCC-CC-CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH-----------HHHHHHHHhCC
Q 018919 216 EDARIAVQAGAAGIIVSNHGA-RQ-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGA 282 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg-~~-~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-----------~dv~kal~~GA 282 (349)
+.|+.-.+.|||-|.+-.--+ +. .....+.++.+.++++.+ .+|+.+.||||+- +++.++|.+||
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Ga 348 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGA 348 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcCC
Confidence 678999999999998765322 11 112234578888888877 7999999999998 55889999999
Q ss_pred CEEEEchHHHH
Q 018919 283 SGIFIGRPVVY 293 (349)
Q Consensus 283 ~~V~ig~~~l~ 293 (349)
|-|.||+..+.
T Consensus 349 dkV~i~s~Av~ 359 (538)
T PLN02617 349 DKISIGSDAVY 359 (538)
T ss_pred CEEEEChHHHh
Confidence 99999997765
|
|
| >COG0176 MipB Transaldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.34 Score=44.31 Aligned_cols=150 Identities=18% Similarity=0.168 Sum_probs=99.1
Q ss_pred HHHHhhCCC--ceEEEEeecCChhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc
Q 018919 115 EEVASTGPG--IRFFQLYVYKDRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (349)
Q Consensus 115 e~i~~~~~~--~~~~Ql~~~~~~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (349)
.|+.+..|+ +.+.|... .|.+.+.+.++++.+. +-..+.|-+..... |
T Consensus 54 ~ei~~~v~G~v~e~~~~ls-~d~e~mi~eA~~L~~~~~~~~i~IKIP~T~e---------------G------------- 104 (239)
T COG0176 54 KEILKIVPGRVTEVDEVLS-FDAEAMIEEARRLAKLIDNVGIVIKIPATWE---------------G------------- 104 (239)
T ss_pred HHHHhcCCCCCeEeeeeec-ccHHHHHHHHHHHHHhcCcCCeEEEeCCCHH---------------H-------------
Confidence 456655564 45566543 5777777777777765 33335665532210 0
Q ss_pred hHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHH---HHHhcCC-CcEEEecC
Q 018919 192 MDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV---VKATQGR-IPVFLDGG 267 (349)
Q Consensus 192 ~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i---~~~~~~~-ipvia~GG 267 (349)
.+.++.+++. ++++-+-.+.+...|..|.++|++.|.. .=||-.|++......+.++ .+..+.. ..+++.|
T Consensus 105 -l~Ai~~L~~e-GI~~NvTLiFS~~QAl~aa~aga~~iSp--FvgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~vas- 179 (239)
T COG0176 105 -LKAIKALEAE-GIKTNVTLIFSAAQALLAAEAGATYISP--FVGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLVAS- 179 (239)
T ss_pred -HHHHHHHHHC-CCeeeEEEEecHHHHHHHHHhCCeEEEe--ecchHHhhccCchHHHHHHHHHHHHhccccceEEEec-
Confidence 3556677665 7888888889999999999999988865 3345444444333344444 4433223 4566555
Q ss_pred CCCHHHHHHHHHhCCCEEEEchHHHHHHhhc
Q 018919 268 VRRGTDVFKALALGASGIFIGRPVVYSLAAE 298 (349)
Q Consensus 268 I~~~~dv~kal~~GA~~V~ig~~~l~~~~~~ 298 (349)
++.+.++..+..+|||.+-+.-..+..+...
T Consensus 180 ~~~~~~~~~~~l~G~d~~Tip~~~l~~l~~~ 210 (239)
T COG0176 180 ARFPNHVYIAALAGADVLTIPPDLLKQLLKH 210 (239)
T ss_pred CccHHHHHHHHHhCCCcccCCHHHHHHHHhc
Confidence 9999999999999999999999888776554
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.6 Score=44.04 Aligned_cols=107 Identities=20% Similarity=0.262 Sum_probs=71.7
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~kal~~GA~~V 285 (349)
.+|++|+... +.|+|.+-++. ||-. .+.| .++.|.+|.+.+ ++|++.=||=..++ ++.|++.+|..-|
T Consensus 155 T~peeA~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 155 TNPDAAAEFVERTGIDSLAVAIGTAHGLY---KGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHhCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 3678887755 59999999874 5543 3333 578899999887 78888877665554 5667899999999
Q ss_pred EEchHHHHHHhh--------c-C----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA--------E-G----EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~--------~-G----~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|.+..+... . + ..-.....+.+++..+..|..+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 230 NVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976543210 0 0 1112334455666667777777653
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.068 Score=47.34 Aligned_cols=125 Identities=22% Similarity=0.183 Sum_probs=81.7
Q ss_pred EEEEee-cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh-
Q 018919 126 FFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI- 202 (349)
Q Consensus 126 ~~Ql~~-~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~- 202 (349)
|+|+-. ..+.+...+.++.+.+. +++++++... . ..+ .+.++++++.
T Consensus 2 ~~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~----------~-------------------~~~g~~~i~~i~~~~ 51 (202)
T cd04726 2 LLQVALDLLDLEEALELAKKVPDG-VDIIEAGTPL----------I-------------------KSEGMEAVRALREAF 51 (202)
T ss_pred ceEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHH----------H-------------------HHhCHHHHHHHHHHC
Confidence 455533 13567777888888888 9998874321 0 011 4678888886
Q ss_pred cCCcEEEEE-ecCH--HHHHHHHHcCCCEEEEecCCCCCCCCchhhHH-HHHHHHHHhcCCCcEEEe-cCCCCHHHHHHH
Q 018919 203 TKLPILVKG-VLTA--EDARIAVQAGAAGIIVSNHGARQLDYVPATIM-ALEEVVKATQGRIPVFLD-GGVRRGTDVFKA 277 (349)
Q Consensus 203 ~~~pv~vK~-v~~~--~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipvia~-GGI~~~~dv~ka 277 (349)
.++|+++-. +.++ ..++.+.++|+|+|++.... .+...+ .+..++ .. +++++++ =+..|+.++.++
T Consensus 52 ~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~------~~~~~~~~i~~~~-~~--g~~~~v~~~~~~t~~e~~~~ 122 (202)
T cd04726 52 PDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAA------PLSTIKKAVKAAK-KY--GKEVQVDLIGVEDPEKRAKL 122 (202)
T ss_pred CCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeC------CHHHHHHHHHHHH-Hc--CCeEEEEEeCCCCHHHHHHH
Confidence 478887732 2233 45789999999999994321 111122 222222 22 5777775 789999999998
Q ss_pred HHhCCCEEEEch
Q 018919 278 LALGASGIFIGR 289 (349)
Q Consensus 278 l~~GA~~V~ig~ 289 (349)
+..|+|.|.++.
T Consensus 123 ~~~~~d~v~~~~ 134 (202)
T cd04726 123 LKLGVDIVILHR 134 (202)
T ss_pred HHCCCCEEEEcC
Confidence 889999999853
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.019 Score=54.38 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=68.2
Q ss_pred HHHHHHHHhcC-----CcEEEEEecCHHHHHHHHH------cCCCEEEEecC--CCCCCCCchhhHHHHHHHHHHhcCCC
Q 018919 194 EDVKWLQTITK-----LPILVKGVLTAEDARIAVQ------AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRI 260 (349)
Q Consensus 194 ~~i~~i~~~~~-----~pv~vK~v~~~~~a~~a~~------~G~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~i 260 (349)
+.++.+|+..+ .+|.| .+.+.++++.+++ +|+|.|.+.|- ..... ..+.+.+.+..+.++++.
T Consensus 188 ~av~~~r~~~~~~~~~~kIeV-Ev~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~---~~~~e~l~~av~~~~~~~ 263 (308)
T PLN02716 188 NAVQSADKYLEEKGLSMKIEV-ETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENG---DVDVSMLKEAVELINGRF 263 (308)
T ss_pred HHHHHHHHhhhhcCCCeeEEE-EECCHHHHHHHHHhcccccCCCCEEEeCCCccccccc---CCCHHHHHHHHHhhCCCc
Confidence 34677766221 34443 4679999999999 99999999874 11111 124566667766666678
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 261 PVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 261 pvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
++-++|||. .+.+.++...|+|.+.+|....
T Consensus 264 ~lEaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 264 ETEASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred eEEEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 999999986 4888888889999999998654
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.36 Score=45.74 Aligned_cols=179 Identities=16% Similarity=0.092 Sum_probs=96.8
Q ss_pred hHHHHHHHHHcCCeEEecCCC-------------CCCHHHHHh-------hCCCceEEEEe-ecCChhHHHHHHHHHHHc
Q 018919 90 EYATARAASAAGTIMTLSSWS-------------TSSVEEVAS-------TGPGIRFFQLY-VYKDRNVVAQLVRRAERA 148 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~-------------~~~~e~i~~-------~~~~~~~~Ql~-~~~~~~~~~~~~~~~~~~ 148 (349)
|..-|+.+.++|...+..+.+ ..+++|+.. ...-|..+-+- +..+...+.+.+++++++
T Consensus 25 Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~a 104 (294)
T TIGR02319 25 DALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERV 104 (294)
T ss_pred CHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHc
Confidence 346889999999887653221 124444332 22223333220 012333357789999999
Q ss_pred CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEe------cCHH----
Q 018919 149 GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGV------LTAE---- 216 (349)
Q Consensus 149 G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v------~~~~---- 216 (349)
|+.+|.|. |...+ +| .++.-. ..+.+.+. .+.|+..++.. +.++++--. ...+
T Consensus 105 Gaagi~IE-Dq~~p-K~-----cg~~~~--------k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~ 169 (294)
T TIGR02319 105 GIVGYHLE-DQVNP-KR-----CGHLEG--------KRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIR 169 (294)
T ss_pred CCeEEEEE-CCCCc-cc-----cCCCCC--------ccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHH
Confidence 99887652 32110 00 111000 00122322 45566666543 334443222 1123
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcE---EEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 217 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV---FLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv---ia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
-++...++|||.|.+. ++.+.+.+.++.+.++ .|+ +..||-.-...+.+.-++|.+.|..+...++
T Consensus 170 Ra~aY~eAGAD~ifi~---------~~~~~~ei~~~~~~~~--~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~ 238 (294)
T TIGR02319 170 RSREYVAAGADCIFLE---------AMLDVEEMKRVRDEID--APLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWM 238 (294)
T ss_pred HHHHHHHhCCCEEEec---------CCCCHHHHHHHHHhcC--CCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHH
Confidence 3566789999999882 2345677888888773 444 4444432223455566799999999988776
Q ss_pred H
Q 018919 294 S 294 (349)
Q Consensus 294 ~ 294 (349)
+
T Consensus 239 a 239 (294)
T TIGR02319 239 A 239 (294)
T ss_pred H
Confidence 5
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.67 Score=44.14 Aligned_cols=109 Identities=19% Similarity=0.196 Sum_probs=75.3
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCHH--------------
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-------------- 272 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~-------------- 272 (349)
.+|++|+.-. +.|+|.+-++. ||-.... +.| .++.|.+|++.+ ++|++.=||=..++
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~-~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~ 231 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFK-GEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLK 231 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCC-CCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhccccc
Confidence 4578887765 58999998874 4443211 333 578999998887 79999998877776
Q ss_pred --------HHHHHHHhCCCEEEEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 273 --------DVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 273 --------dv~kal~~GA~~V~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
++.|++.+|..-|=++|.+..+... .. ..-.....+.+++..+..|..+|..
T Consensus 232 ~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 232 GSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred cccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999999999977544321 00 1123334455666667777777753
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.46 Score=44.87 Aligned_cols=193 Identities=17% Similarity=0.076 Sum_probs=105.0
Q ss_pred eeecccccccccCChhhHHHHHHHHHc---------CCeEEecCCC------------CCCHHHHHhh-------CCCce
Q 018919 74 IMIAPTAMQKMAHPEGEYATARAASAA---------GTIMTLSSWS------------TSSVEEVAST-------GPGIR 125 (349)
Q Consensus 74 i~iApm~~~~l~~~~~~~~la~aa~~~---------G~~~~~~~~~------------~~~~e~i~~~-------~~~~~ 125 (349)
.++.|=.+ |..-|+.+.+. |...+..+.. ..+++|+... ..-|.
T Consensus 10 ~l~~p~~~--------D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv 81 (285)
T TIGR02320 10 LERLMEAH--------NGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPI 81 (285)
T ss_pred CEEEecCc--------CHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCE
Confidence 55666433 33677888888 8776543221 1244444322 12344
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh-c
Q 018919 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI-T 203 (349)
Q Consensus 126 ~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~-~ 203 (349)
.+-.-...++..+.+.+++++++|+.+|.|. |...+ +| .++. . ......+.+.+. .+.|+..++. .
T Consensus 82 ~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iE-Dq~~p-k~-----cg~~-~----~~~~~~l~s~ee~~~kI~Aa~~a~~ 149 (285)
T TIGR02320 82 ILDGDTGGNFEHFRRLVRKLERRGVSAVCIE-DKLGL-KK-----NSLF-G----NDVAQPQASVEEFCGKIRAGKDAQT 149 (285)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeEEEEe-ccCCC-cc-----cccc-C----CCCcccccCHHHHHHHHHHHHHhcc
Confidence 4433223566777888999999999987651 32110 00 0000 0 000000122222 4556666554 2
Q ss_pred --CCcEEEEE-----ecCH----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC---CCcEEEecCCC
Q 018919 204 --KLPILVKG-----VLTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVR 269 (349)
Q Consensus 204 --~~pv~vK~-----v~~~----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~---~ipvia~GGI~ 269 (349)
+++|++.. .... +-++...++|||+|.+. + ++.+.+.+.++.+.++. ++|+++..+-.
T Consensus 150 ~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~--~------~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~ 221 (285)
T TIGR02320 150 TEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH--S------RKKDPDEILEFARRFRNHYPRTPLVIVPTSY 221 (285)
T ss_pred CCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec--C------CCCCHHHHHHHHHHhhhhCCCCCEEEecCCC
Confidence 45666652 1123 34677899999999983 1 12345666666666643 56887755311
Q ss_pred CHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 270 RGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 270 ~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
-...+.+.-++|.+.|..|...+++
T Consensus 222 ~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 222 YTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred CCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 1123545567999999999877764
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.06 Score=51.78 Aligned_cols=186 Identities=18% Similarity=0.131 Sum_probs=102.2
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEE---ecCCCC------CCH----HH----HHhhCCCceEEEEeecC
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT---LSSWST------SSV----EE----VASTGPGIRFFQLYVYK 133 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~---~~~~~~------~~~----e~----i~~~~~~~~~~Ql~~~~ 133 (349)
..|++++=++ . +++.-..+++.+.++|+.++ ++.... ..+ .+ +++....|.++.+-+
T Consensus 99 ~~pvi~si~g-~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIASLNG-V---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEEeCC-C---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 4687776432 2 34444678888888886654 222100 011 12 222223567777643
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEE-EEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPIL-VKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~-vK~ 211 (349)
+.+...+.++.++++|+++|.++-..+.... |....-..+ +. ..++...... ++.++++++..++||+ +.+
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~i---d~~~~~~~~-~~---glSG~~~~~~al~~v~~v~~~~~ipIig~GG 245 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNRFYQPDI---DLETLEVVP-NL---LLSSPAEIRLPLRWIAILSGRVKASLAASGG 245 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcCcCCCCc---cccccceec-CC---CcCCccchhHHHHHHHHHHcccCCCEEEECC
Confidence 3335677888899999999987543321111 000000000 00 0111001112 6778888888899986 666
Q ss_pred ecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhH-HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~ 279 (349)
+.+.+||.+.+.+|||+|.+... -+..|+... +.+.++.+++ -.-|+.+-+|+.-.++
T Consensus 246 I~s~~Da~e~l~aGA~~Vqv~ta---~~~~gp~~~~~i~~~L~~~l-------~~~g~~~i~e~~G~~~ 304 (325)
T cd04739 246 VHDAEDVVKYLLAGADVVMTTSA---LLRHGPDYIGTLLAGLEAWM-------EEHGYESVQQLRGSMS 304 (325)
T ss_pred CCCHHHHHHHHHcCCCeeEEehh---hhhcCchHHHHHHHHHHHHH-------HHcCCCCHHHHhcccc
Confidence 89999999999999999998521 012233222 2333343333 2356778888765434
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.69 Score=43.67 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=107.3
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------hC-C-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TG-P-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~~-~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-..-.+.++-..+.+...+.|+.+++ + ++...+.||..+ .. . -+.+.++. . +...
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 35667777544334555556788888889976653 2 334456665322 22 2 34566663 3 5667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.++++.+++.|++++.+.- |.. . + .+.+ ..+..+.+.+.+++||++=..
T Consensus 83 ~i~~a~~a~~~Gad~v~~~p--P~y-----------~-~-----------~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~ 137 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLP--PYL-----------T-E-----------APQEGLYAHVEAVCKSTDLGVIVYNRANAV 137 (289)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCC-----------C-C-----------CCHHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 78899999999999997622 210 0 0 0112 156677888888999987643
Q ss_pred cCHHHHHHHHH-cC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH-HHHHHHhCCCEEEEch
Q 018919 213 LTAEDARIAVQ-AG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-VFKALALGASGIFIGR 289 (349)
Q Consensus 213 ~~~~~a~~a~~-~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d-v~kal~~GA~~V~ig~ 289 (349)
.+++...++.+ .. +-+|.-+ ...+..+.++.+..++++.|+ .|-.+.++ +..++.+||++.+.|.
T Consensus 138 l~~~~l~~L~~~~pnivgiKds----------~~d~~~~~~~~~~~~~~~~v~--~G~~~~d~~~~~~l~~Ga~G~is~~ 205 (289)
T cd00951 138 LTADSLARLAERCPNLVGFKDG----------VGDIELMRRIVAKLGDRLLYL--GGLPTAEVFALAYLAMGVPTYSSAV 205 (289)
T ss_pred CCHHHHHHHHhcCCCEEEEEeC----------CCCHHHHHHHHHhcCCCeEEE--eCCCcchHhHHHHHHCCCCEEEech
Confidence 46777777765 32 2333221 113444555555554444433 33332233 5678899999998887
Q ss_pred HHH
Q 018919 290 PVV 292 (349)
Q Consensus 290 ~~l 292 (349)
+-+
T Consensus 206 ~n~ 208 (289)
T cd00951 206 FNF 208 (289)
T ss_pred hhh
Confidence 554
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.047 Score=51.37 Aligned_cols=153 Identities=22% Similarity=0.221 Sum_probs=85.9
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCCCC---------CC---HHH----HHhhCCCceEEEEeecC
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWST---------SS---VEE----VASTGPGIRFFQLYVYK 133 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~~~---------~~---~e~----i~~~~~~~~~~Ql~~~~ 133 (349)
..|++++=+ +. +++.-...++.+.+.|+.++ +....+ .. +.+ +++....+.++.+-...
T Consensus 98 ~~pvi~si~-g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIASVG-GS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEEec-cC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 457666533 22 33334577888888887655 221111 01 122 22222345667765545
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc-ccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK-NFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~-~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
+.+.+.+.++.++++|++++.++-.... +..+... ..|...... ...+...... ++.++++++.. ++||+.
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~---~~~~~~~--~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia 248 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISG---RVVDLKT--VGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIG 248 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCc---cceeccc--CccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 5667888999999999999987532211 0000000 000000000 0000000112 67799999988 899865
Q ss_pred E-EecCHHHHHHHHHcCCCEEEEe
Q 018919 210 K-GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 210 K-~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
- ++.+++++.+++++|||+|.+.
T Consensus 249 ~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 249 VGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred ECCCCCHHHHHHHHHcCccHheEc
Confidence 4 4688999999999999999884
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.19 Score=47.97 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=88.0
Q ss_pred eEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc
Q 018919 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT 203 (349)
Q Consensus 125 ~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~ 203 (349)
..+++.. .+++...+.++++.+.|++++-++++.. ++. .+.++.+|+.+
T Consensus 126 ~~~~~~~-~~~~~~~~~~~~~~~~Gf~~iKik~g~~-----------------------------~~~d~~~v~~lr~~~ 175 (316)
T cd03319 126 TDYTISI-DTPEAMAAAAKKAAKRGFPLLKIKLGGD-----------------------------LEDDIERIRAIREAA 175 (316)
T ss_pred eEEEEeC-CCHHHHHHHHHHHHHcCCCEEEEEeCCC-----------------------------hhhHHHHHHHHHHhC
Confidence 3345543 5677777788888889999999887431 112 56788888877
Q ss_pred C-CcEEEEEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 018919 204 K-LPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 276 (349)
Q Consensus 204 ~-~pv~vK~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k 276 (349)
+ .++.++.- -+.++| +.+.+.|++.|-= ...+..++.+.++++.. ++||++++.+.+..|+.+
T Consensus 176 g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEe--------P~~~~d~~~~~~L~~~~--~ipIa~~E~~~~~~~~~~ 245 (316)
T cd03319 176 PDARLRVDANQGWTPEEAVELLRELAELGVELIEQ--------PVPAGDDDGLAYLRDKS--PLPIMADESCFSAADAAR 245 (316)
T ss_pred CCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC--------CCCCCCHHHHHHHHhcC--CCCEEEeCCCCCHHHHHH
Confidence 4 67777654 234443 4556677766621 01133567788887766 799999999999999999
Q ss_pred HHHh-CCCEEEEchHH
Q 018919 277 ALAL-GASGIFIGRPV 291 (349)
Q Consensus 277 al~~-GA~~V~ig~~~ 291 (349)
+++. ++|.|++-...
T Consensus 246 ~~~~~~~d~v~~~~~~ 261 (316)
T cd03319 246 LAGGGAYDGINIKLMK 261 (316)
T ss_pred HHhcCCCCEEEEeccc
Confidence 9995 68888886543
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.05 Score=49.72 Aligned_cols=79 Identities=24% Similarity=0.363 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH-----------HHHHHHHhCCCE
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-----------DVFKALALGASG 284 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~-----------dv~kal~~GA~~ 284 (349)
+.++.+.+.|+|+++.+.+ .+..+++..+ .-.+...+||+ +. ....++..|||.
T Consensus 139 ~~a~~a~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~ 203 (230)
T PRK00230 139 RLAKLAQEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDY 203 (230)
T ss_pred HHHHHHHHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCE
Confidence 3456778899999988521 1344444443 33457789998 33 467788899999
Q ss_pred EEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 285 IFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 285 V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
+.+||+++.+ +......+.+.+++.
T Consensus 204 iVvGR~I~~a------~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 204 IVVGRPITQA------ADPAAAYEAILAEIA 228 (230)
T ss_pred EEECCcccCC------CCHHHHHHHHHHHhh
Confidence 9999998742 222345566666553
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.018 Score=54.96 Aligned_cols=88 Identities=20% Similarity=0.307 Sum_probs=58.6
Q ss_pred CCceEEEEeecC--ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH
Q 018919 122 PGIRFFQLYVYK--DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL 199 (349)
Q Consensus 122 ~~~~~~Ql~~~~--~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i 199 (349)
+.+..+.+-... +.+.+.+.++.++++|+++|.||--++.. .+ ..+..|+.++++
T Consensus 122 ~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q---------~~--------------~~~a~w~~i~~i 178 (309)
T PF01207_consen 122 PIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ---------RY--------------KGPADWEAIAEI 178 (309)
T ss_dssp SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC---------CC--------------TS---HHHHHHC
T ss_pred ccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh---------cC--------------CcccchHHHHHH
Confidence 334455443322 36778999999999999999998765421 11 012239999999
Q ss_pred HHhcCCcEEEEE-ecCHHHHHHHHHc-CCCEEEEe
Q 018919 200 QTITKLPILVKG-VLTAEDARIAVQA-GAAGIIVS 232 (349)
Q Consensus 200 ~~~~~~pv~vK~-v~~~~~a~~a~~~-G~d~I~v~ 232 (349)
++..++||+.-| +.+.++++.+.+. |+|+|.+.
T Consensus 179 ~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 179 KEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp HHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred hhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 999999998876 6899999998876 99999884
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.031 Score=52.51 Aligned_cols=120 Identities=22% Similarity=0.259 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-----cCCCc-EEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIP-VFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ip-via~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
++|..|++.|+..|++|-.+...-....|.+-++..+..++ +.++- |+=+|-+|+.-|++..+..|||+|.=.-
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYl 225 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYL 225 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHC
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHH
Confidence 45788999999999998654321112234555666666654 23454 4557889999999999999999985332
Q ss_pred HHH--HHHhhcC-------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 290 PVV--YSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 290 ~~l--~~~~~~G-------~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
+|- ..+...| ++.+.++.+.+.++|.+.|..+|.+.++.-++..+.
T Consensus 226 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiF 280 (287)
T PF04898_consen 226 AYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIF 280 (287)
T ss_dssp CHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--E
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceee
Confidence 221 1122223 357889999999999999999999999887766543
|
In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.013 Score=52.38 Aligned_cols=79 Identities=30% Similarity=0.297 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 193 DEDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 193 ~~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.+.|+.+++..+ .-|....+.++++++.+.++|+++|+--|. +-+.+... . ..++|++ =|+.|+
T Consensus 52 ~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~----------~~ev~~~a-~--~~~ip~~--PG~~Tp 116 (211)
T COG0800 52 LEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPGL----------NPEVAKAA-N--RYGIPYI--PGVATP 116 (211)
T ss_pred HHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHH-H--hCCCccc--CCCCCH
Confidence 677999999885 556666789999999999999999954221 11222222 1 2267776 899999
Q ss_pred HHHHHHHHhCCCEEE
Q 018919 272 TDVFKALALGASGIF 286 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ 286 (349)
.++.+|+++|++.+=
T Consensus 117 tEi~~Ale~G~~~lK 131 (211)
T COG0800 117 TEIMAALELGASALK 131 (211)
T ss_pred HHHHHHHHcChhhee
Confidence 999999999998773
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.043 Score=52.63 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=67.8
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHh
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTI 202 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~ 202 (349)
.+....+-...|.+.+.+.++.++++|++.+.||--+ ++.+... ..+..|+.|+.+++.
T Consensus 142 ~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRt-------r~~kg~~--------------~~pad~~~i~~v~~~ 200 (358)
T KOG2335|consen 142 VPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRT-------REQKGLK--------------TGPADWEAIKAVREN 200 (358)
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEeccc-------HHhcCCC--------------CCCcCHHHHHHHHHh
Confidence 4455555556789999999999999999999887543 2222110 112239999999999
Q ss_pred cC-CcEEEEE-ecCHHHHHHHHH-cCCCEEEEe
Q 018919 203 TK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 232 (349)
Q Consensus 203 ~~-~pv~vK~-v~~~~~a~~a~~-~G~d~I~v~ 232 (349)
.. +||++-| |.+.+++.++.+ .|+|+|-+.
T Consensus 201 ~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 201 VPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred CcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 87 9999877 688999999998 999999774
|
|
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.31 Score=46.11 Aligned_cols=109 Identities=25% Similarity=0.325 Sum_probs=74.6
Q ss_pred CHHHHHHH-HHcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHhCCCEEE
Q 018919 214 TAEDARIA-VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIF 286 (349)
Q Consensus 214 ~~~~a~~a-~~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~kal~~GA~~V~ 286 (349)
+|++|+.. .+.|+|.+-++- ||..... ..| .++.|.+|.+.++ ++|++.=||=..++ ++.+++.+|..-|=
T Consensus 156 dP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~-~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiN 233 (287)
T PF01116_consen 156 DPEEAKEFVEETGVDALAVAIGTAHGMYKGG-KKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKIN 233 (287)
T ss_dssp SHHHHHHHHHHHTTSEEEE-SSSBSSSBSSS-SSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEecCccccccCCC-CCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEEE
Confidence 57887775 589999999874 5543211 133 4788999998874 69999988877766 78889999999999
Q ss_pred EchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 287 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 287 ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
++|.+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 234 i~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 234 IGTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp ESHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977654321 00 1223444566777777788887764
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.91 Score=43.16 Aligned_cols=182 Identities=20% Similarity=0.223 Sum_probs=111.5
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHhh--------CC-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAST--------GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~~--------~~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+++-..+.|+.+++ | ++.+.+.+|-.+. .. -+.+.+... .+-+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~-~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS-NSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC-CcHHH
Confidence 57778887653335556666788888888977654 2 2344667664321 12 335566543 45666
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v---- 212 (349)
..++++.+++.|++++.+-- |. |.-| +++- .+..+++.+.+++|+++=.+
T Consensus 88 ai~lak~a~~~Gad~il~v~--Py-----------Y~k~------------~~~gl~~hf~~ia~a~~lPvilYN~P~~t 142 (299)
T COG0329 88 AIELAKHAEKLGADGILVVP--PY-----------YNKP------------SQEGLYAHFKAIAEAVDLPVILYNIPSRT 142 (299)
T ss_pred HHHHHHHHHhcCCCEEEEeC--CC-----------CcCC------------ChHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 78899999999999987532 21 1101 1222 57788888889999998775
Q ss_pred ---cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 ---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 ---~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.++|...++.+. -..+-+=.. ..++..+.++....+++--++.+|+ -+.++-++.+|++++..+.
T Consensus 143 g~~l~~e~i~~la~~-~nivgiKd~--------~gd~~~~~~~~~~~~~~~f~v~~G~---d~~~~~~~~~G~~G~is~~ 210 (299)
T COG0329 143 GVDLSPETIARLAEH-PNIVGVKDS--------SGDLDRLEEIIAALGDRDFIVLSGD---DELALPALLLGADGVISVT 210 (299)
T ss_pred CCCCCHHHHHHHhcC-CCEEEEEeC--------CcCHHHHHHHHHhcCccCeeEEeCc---hHHHHHHHhCCCCeEEecc
Confidence 456888887772 222222111 1145666666665533111344442 3556777889999999988
Q ss_pred HH
Q 018919 290 PV 291 (349)
Q Consensus 290 ~~ 291 (349)
.-
T Consensus 211 ~N 212 (299)
T COG0329 211 AN 212 (299)
T ss_pred cc
Confidence 43
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.18 Score=47.56 Aligned_cols=151 Identities=23% Similarity=0.247 Sum_probs=83.6
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCCCC----------CCHH---H----HHhhCCCceEEEEeec
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWST----------SSVE---E----VASTGPGIRFFQLYVY 132 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~~~----------~~~e---~----i~~~~~~~~~~Ql~~~ 132 (349)
..|++++=++. +++.-...++.+.++|+.++ +.-.++ .+++ + +++....+.++.+-.
T Consensus 89 ~~p~ivsi~g~----~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~- 163 (296)
T cd04740 89 GTPVIASIAGS----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP- 163 (296)
T ss_pred CCcEEEEEecC----CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-
Confidence 45777655432 23434577888888887765 321111 1122 2 222223456777632
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccccCCCCCCch-HHHHHHHHHhcCCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK 210 (349)
+.+.+.+.++.++++|++++.+. ++.. +.. -|.+.. .|. +.......+...... ++.++++++.+++||+.-
T Consensus 164 -~~~~~~~~a~~~~~~G~d~i~~~-nt~~-g~~-~~~~~~--~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~ 237 (296)
T cd04740 164 -NVTDIVEIARAAEEAGADGLTLI-NTLK-GMA-IDIETR--KPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGV 237 (296)
T ss_pred -CchhHHHHHHHHHHcCCCEEEEE-CCCc-ccc-cccccC--ceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEE
Confidence 34456788889999999998652 2110 100 000000 000 000000001011123 688999999889998764
Q ss_pred -EecCHHHHHHHHHcCCCEEEEe
Q 018919 211 -GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 211 -~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.+++++.+++++|||+|.+.
T Consensus 238 GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 238 GGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEc
Confidence 4679999999999999999884
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.63 Score=42.86 Aligned_cols=178 Identities=21% Similarity=0.179 Sum_probs=100.0
Q ss_pred hHHHHHHHHHcCCeEEecCCC------------CCCHHHHHhh-------CCCceEEEE-eecCChhHHHHHHHHHHHcC
Q 018919 90 EYATARAASAAGTIMTLSSWS------------TSSVEEVAST-------GPGIRFFQL-YVYKDRNVVAQLVRRAERAG 149 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~~-------~~~~~~~Ql-~~~~~~~~~~~~~~~~~~~G 149 (349)
|...|+.+.+.|+..+..+.+ ..+++++... ...|...-+ ++..+.+...+.++++.++|
T Consensus 18 D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G 97 (243)
T cd00377 18 DALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAG 97 (243)
T ss_pred CHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 447899999999887653321 1345554332 112333222 11235566778888999999
Q ss_pred CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc----CCcEEEEE----e--cCH---
Q 018919 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT----KLPILVKG----V--LTA--- 215 (349)
Q Consensus 150 ~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~----~~pv~vK~----v--~~~--- 215 (349)
+.++.+. |...+ +| .+.. ....+.+.+. .+.|+..++.. +.+|++.. . ...
T Consensus 98 ~~gv~iE-D~~~~-k~-----~g~~--------~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~ea 162 (243)
T cd00377 98 AAGIHIE-DQVGP-KK-----CGHH--------GGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEA 162 (243)
T ss_pred CEEEEEe-cCCCC-cc-----ccCC--------CCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHH
Confidence 9988762 22110 00 0000 0000223333 45566666654 34566551 1 223
Q ss_pred -HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEe--cCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 216 -EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD--GGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 216 -~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~--GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+-++.+.++|||+|.+. + +.+.+.+.++.+.. +.||++. .+-. ....-..-++|.+.|.+|...+
T Consensus 163 i~Ra~ay~~AGAD~v~v~--~-------~~~~~~~~~~~~~~--~~Pl~~~~~~~~~-~~~~~~l~~lG~~~v~~~~~~~ 230 (243)
T cd00377 163 IERAKAYAEAGADGIFVE--G-------LKDPEEIRAFAEAP--DVPLNVNMTPGGN-LLTVAELAELGVRRVSYGLALL 230 (243)
T ss_pred HHHHHHHHHcCCCEEEeC--C-------CCCHHHHHHHHhcC--CCCEEEEecCCCC-CCCHHHHHHCCCeEEEEChHHH
Confidence 44677899999999983 2 22567777777775 5666664 2221 0233344568999999999777
Q ss_pred HH
Q 018919 293 YS 294 (349)
Q Consensus 293 ~~ 294 (349)
++
T Consensus 231 ~~ 232 (243)
T cd00377 231 RA 232 (243)
T ss_pred HH
Confidence 64
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.028 Score=51.27 Aligned_cols=73 Identities=30% Similarity=0.423 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCEEEEec-CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 215 AEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
.+.|+.-.+.||..+.+-- .|. ..+++-..+.+.++.+.+ ++||=..||||+-+++.+.|.+|++.|.+|+..
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA--~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGA--KAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeecccc--ccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 3778888889999887642 222 124455678999999887 799999999999999999999999999999944
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.033 Score=51.72 Aligned_cols=41 Identities=37% Similarity=0.550 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 192 MDEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 192 ~~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
..+.++++|+.++.||++.+ +.++++++.+.++|||++++.
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 36789999998899999877 567999999999999999984
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.96 Score=42.63 Aligned_cols=107 Identities=17% Similarity=0.280 Sum_probs=72.9
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+.-. +.|+|.+-++. ||-. .+.| .++.|.+|++.+ ++|++.=||=..+ +++.|++.+|..-|
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGt~HG~y---k~~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 227 (282)
T TIGR01858 153 TDPQEAKEFVEATGVDSLAVAIGTAHGLY---KKTPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKV 227 (282)
T ss_pred CCHHHHHHHHHHHCcCEEecccCccccCc---CCCCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence 4678887755 69999999874 5543 3333 578999999888 7888887776655 45667889999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|.+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 228 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 228 NVATELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543211 00 1223344556667777777777754
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.055 Score=46.62 Aligned_cols=109 Identities=22% Similarity=0.236 Sum_probs=73.0
Q ss_pred hHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHH
Q 018919 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d 168 (349)
|.++-=.+......+++||-+. -+..+.. +...+|=+.--|.......++.+++.+.|++++ +..-
T Consensus 65 e~~i~fi~~~~~pdGIISTk~~----~i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEv-LPGv-------- 131 (181)
T COG1954 65 EVAIEFIKEVIKPDGIISTKSN----VIKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEV-LPGV-------- 131 (181)
T ss_pred hHHHHHHHHhccCCeeEEccHH----HHHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEE-cCcc--------
Confidence 4444444555556666665432 2222222 333344322356667778888889999999986 2110
Q ss_pred hhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecC
Q 018919 169 IKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~ 234 (349)
+ -+.++++.++++.||+..|. .+.|++..|+++||-++..||.
T Consensus 132 ------~-----------------Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs~~ 175 (181)
T COG1954 132 ------M-----------------PKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTSNT 175 (181)
T ss_pred ------c-----------------HHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeecch
Confidence 1 26799999999999999884 7899999999999999987764
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.71 Score=43.59 Aligned_cols=178 Identities=17% Similarity=0.123 Sum_probs=98.9
Q ss_pred hHHHHHHHHHcCCeEEecCCC------------CCCHHHHHhh-------CCCceEEEEe-ecCChhHHHHHHHHHHHcC
Q 018919 90 EYATARAASAAGTIMTLSSWS------------TSSVEEVAST-------GPGIRFFQLY-VYKDRNVVAQLVRRAERAG 149 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~~-------~~~~~~~Ql~-~~~~~~~~~~~~~~~~~~G 149 (349)
|..-|+.+.++|...+..+.. ..+++|+.+. ..-|..+-+- +..++..+.+.+++++++|
T Consensus 22 Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG 101 (285)
T TIGR02317 22 NAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAG 101 (285)
T ss_pred CHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 336778888889886643221 1244444322 2223333221 1134666778899999999
Q ss_pred CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEec------CHHH----
Q 018919 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVL------TAED---- 217 (349)
Q Consensus 150 ~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~------~~~~---- 217 (349)
+.+|.|. |...+ +| .++. + ...+.+.+. .+.|+..++.. +.++++--.. ..++
T Consensus 102 ~agi~IE-Dq~~p-K~-----cgh~-~-------g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~R 166 (285)
T TIGR02317 102 AAAVHIE-DQVLP-KR-----CGHL-P-------GKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIER 166 (285)
T ss_pred CeEEEEe-cCCCc-cc-----cCCC-C-------CccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHH
Confidence 9887652 32110 00 1110 0 001223333 45566666654 3445442221 1233
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEE---EecCCCCH-HHHHHHHHhCCCEEEEchHHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRG-TDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi---a~GGI~~~-~dv~kal~~GA~~V~ig~~~l~ 293 (349)
++...++|||.|.+ +| +.+.+.+.++.+.+ +.|++ ..+|- ++ .++.+.-++|.+.|..|...++
T Consensus 167 a~ay~~AGAD~vfi--~g-------~~~~e~i~~~~~~i--~~Pl~~n~~~~~~-~p~~s~~eL~~lGv~~v~~~~~~~~ 234 (285)
T TIGR02317 167 AKAYVEAGADMIFP--EA-------LTSLEEFRQFAKAV--KVPLLANMTEFGK-TPLFTADELREAGYKMVIYPVTAFR 234 (285)
T ss_pred HHHHHHcCCCEEEe--CC-------CCCHHHHHHHHHhc--CCCEEEEeccCCC-CCCCCHHHHHHcCCcEEEEchHHHH
Confidence 56688999999988 22 33567777888777 46773 33442 22 2455566799999999987776
Q ss_pred H
Q 018919 294 S 294 (349)
Q Consensus 294 ~ 294 (349)
+
T Consensus 235 a 235 (285)
T TIGR02317 235 A 235 (285)
T ss_pred H
Confidence 4
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.7 Score=43.76 Aligned_cols=178 Identities=13% Similarity=0.093 Sum_probs=97.3
Q ss_pred HHHHHHHHHcCCeEEe-cCC--C----------CCCHHHHHh-------hCCCceEEEEe-ecCChhHHHHHHHHHHHcC
Q 018919 91 YATARAASAAGTIMTL-SSW--S----------TSSVEEVAS-------TGPGIRFFQLY-VYKDRNVVAQLVRRAERAG 149 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~-~~~--~----------~~~~e~i~~-------~~~~~~~~Ql~-~~~~~~~~~~~~~~~~~~G 149 (349)
..-|+.+.+.|...+. |+. + ..+++|+.. ..+-|..+-+- +..++..+.+.+++++++|
T Consensus 27 a~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aG 106 (292)
T PRK11320 27 AYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAG 106 (292)
T ss_pred HHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 3677888888887663 221 1 123444322 22223333221 1136777788899999999
Q ss_pred CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEec------CHHH----
Q 018919 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVL------TAED---- 217 (349)
Q Consensus 150 ~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~------~~~~---- 217 (349)
+.+|.|. |...+ +| .+.. ....+.+.+. .+.|+..++.- +.++++--.. ..++
T Consensus 107 aagi~IE-Dq~~p-K~-----cg~~--------~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~R 171 (292)
T PRK11320 107 AAAVHIE-DQVGA-KR-----CGHR--------PNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIER 171 (292)
T ss_pred CeEEEEe-cCCCc-cc-----cCCC--------CCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHH
Confidence 9887652 32110 11 0110 0001223332 45566665543 4455442221 1233
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEE---EecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi---a~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
++...++|||.|.+. ++.+.+.+.++.+.+ +.|++ ..+|-.-..++.+.-++|.+.|..|...+++
T Consensus 172 a~aY~eAGAD~ifi~---------~~~~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 172 AQAYVEAGADMIFPE---------AMTELEMYRRFADAV--KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred HHHHHHcCCCEEEec---------CCCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 567889999999882 234577788888777 56773 3344211123444556899999999877664
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.02 Score=58.28 Aligned_cols=233 Identities=22% Similarity=0.341 Sum_probs=134.2
Q ss_pred hhccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|... ...+++|++|.+- +..++.||+.|||...+ +..||.+.++.|..++++. ++++|+..
T Consensus 18 lt~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt------~~~ma~a~a~~GglGvi~~--~~~~e~~~ 89 (495)
T PTZ00314 18 LTYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVT------EHKMAIAMALMGGIGVIHN--NCSIEEQV 89 (495)
T ss_pred CCccceEecccccccccccccccccccCCcccCCceeecCccccc------cHHHHHHHHHCCCeEEecC--CCCHHHHH
Confidence 3599999999865 3557889998886 46788999999998765 6799999999999999953 46777654
Q ss_pred hh----CC-Cce-EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCC----CCC-chhHHhhhhcC--CC--CcCcc-c
Q 018919 119 ST----GP-GIR-FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP----RLG-RREADIKNRFT--LP--PFLTL-K 182 (349)
Q Consensus 119 ~~----~~-~~~-~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p----~~g-~r~~d~~~~~~--~p--~~~~~-~ 182 (349)
+. +. ... ......-.......+.++.+.+.+...+.+.-+.. ..| ...+|++..-. .+ +-++. .
T Consensus 90 ~~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~~~ 169 (495)
T PTZ00314 90 EEVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPRE 169 (495)
T ss_pred HHHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCCcC
Confidence 32 21 111 11111101112334556666777877776532210 001 11233321000 00 00000 0
Q ss_pred ccCCCCCCch--HHHHHHHHHhc--CCc---------------------------------EEEEEe--cC---HHHHHH
Q 018919 183 NFQGLDLGKM--DEDVKWLQTIT--KLP---------------------------------ILVKGV--LT---AEDARI 220 (349)
Q Consensus 183 ~~~~~~~~~~--~~~i~~i~~~~--~~p---------------------------------v~vK~v--~~---~~~a~~ 220 (349)
... ...+.. .+.++.+.+.- .+| +.|... .+ .+.++.
T Consensus 170 ~lv-tv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~ 248 (495)
T PTZ00314 170 KLV-VGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAA 248 (495)
T ss_pred Cce-EeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 000 000111 12222222110 122 222222 12 366888
Q ss_pred HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 221 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 221 a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+.++|+|.|.+...-|+ ....++.+.++++..+ +++|++ |.|.|.+++..++.+|||+|-+|
T Consensus 249 l~~ag~d~i~id~a~G~----s~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 249 LIEAGVDVLVVDSSQGN----SIYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHCCCCEEEEecCCCC----chHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 99999999999753232 1224678888887653 578777 89999999999999999999764
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.02 Score=52.52 Aligned_cols=39 Identities=23% Similarity=0.545 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCcEEEE-EecCHHHHHHHHHcCCCEEEEe
Q 018919 194 EDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
..|+.+++..++||++- ++.+++|+..+.+.|+|+|-+.
T Consensus 179 ~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~n 218 (267)
T CHL00162 179 LNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLN 218 (267)
T ss_pred HHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeec
Confidence 56888888889998775 4689999999999999999773
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.03 Score=50.74 Aligned_cols=68 Identities=25% Similarity=0.382 Sum_probs=45.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEE-EecCHHHHH
Q 018919 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVK-GVLTAEDAR 219 (349)
Q Consensus 141 ~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~v~~~~~a~ 219 (349)
..+++++.|+.++.- +.+|... +.+ +.+ ...|+.+++..++||++- ++-++.+|.
T Consensus 136 ~akrL~d~GcaavMP-lgsPIGS--------------g~G------i~n---~~~l~~i~~~~~vPvIvDAGiG~pSdaa 191 (247)
T PF05690_consen 136 LAKRLEDAGCAAVMP-LGSPIGS--------------GRG------IQN---PYNLRIIIERADVPVIVDAGIGTPSDAA 191 (247)
T ss_dssp HHHHHHHTT-SEBEE-BSSSTTT-----------------------SST---HHHHHHHHHHGSSSBEEES---SHHHHH
T ss_pred HHHHHHHCCCCEEEe-ccccccc--------------CcC------CCC---HHHHHHHHHhcCCcEEEeCCCCCHHHHH
Confidence 577888888888652 5554321 111 122 356888888889999875 367899999
Q ss_pred HHHHcCCCEEEEe
Q 018919 220 IAVQAGAAGIIVS 232 (349)
Q Consensus 220 ~a~~~G~d~I~v~ 232 (349)
.+.|.|+|+|-+-
T Consensus 192 ~AMElG~daVLvN 204 (247)
T PF05690_consen 192 QAMELGADAVLVN 204 (247)
T ss_dssp HHHHTT-SEEEES
T ss_pred HHHHcCCceeehh
Confidence 9999999999873
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.082 Score=48.64 Aligned_cols=125 Identities=17% Similarity=0.252 Sum_probs=78.6
Q ss_pred eecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcE
Q 018919 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPI 207 (349)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv 207 (349)
|...+.+.+.+-++.+.+.|++++++.+=.+ +... .+.++++.+.. +.|+
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~----------------------------dg~vD~~~~~~Li~~a~~~~v 118 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDV----------------------------DGHVDMPRMRKIMAAAGPLAV 118 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC----------------------------CCCcCHHHHHHHHHHhcCCce
Confidence 4333445677888888999999998754221 1112 45566666655 5777
Q ss_pred EEEEe----cCHHH-HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 208 LVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 208 ~vK~v----~~~~~-a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
..--. .++.. .+.+.+.|++.|-.|+ |.. .....++.|.++.+..++.+ |++.|||+. +.+.+....|+
T Consensus 119 TFHRAfD~~~d~~~al~~l~~lG~~rILTSG--g~~--~a~~g~~~L~~lv~~a~~~~-Im~GgGV~~-~Nv~~l~~tG~ 192 (248)
T PRK11572 119 TFHRAFDMCANPLNALKQLADLGVARILTSG--QQQ--DAEQGLSLIMELIAASDGPI-IMAGAGVRL-SNLHKFLDAGV 192 (248)
T ss_pred EEechhhccCCHHHHHHHHHHcCCCEEECCC--CCC--CHHHHHHHHHHHHHhcCCCE-EEeCCCCCH-HHHHHHHHcCC
Confidence 65432 34444 5668999999997653 311 12233556666666554444 899999875 67777667999
Q ss_pred CEEEEc
Q 018919 283 SGIFIG 288 (349)
Q Consensus 283 ~~V~ig 288 (349)
..+=..
T Consensus 193 ~~~H~s 198 (248)
T PRK11572 193 REVHSS 198 (248)
T ss_pred CEEeeC
Confidence 887543
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.31 E-value=1 Score=42.57 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=74.5
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+.-. +.|+|.+-++. ||-+ .+.| .++.|.+|.+.+ ++|++.=||=..+ +++.+++.+|..-|
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~Ki 230 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPY---KGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKI 230 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeecccccccc---CCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 4678887765 58999999874 4433 2333 578899998887 7999999988877 66777999999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|.+-.+... .. ..-.....+.+++..+..|..+|..
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 231 NVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred EeccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543211 00 1123334456666667777777654
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.076 Score=56.89 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=56.2
Q ss_pred cCHHHHHHHH----Hc---CCCEEEEecCCCCCCC-Cc--hhhHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHhC
Q 018919 213 LTAEDARIAV----QA---GAAGIIVSNHGARQLD-YV--PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 213 ~~~~~a~~a~----~~---G~d~I~v~~~gg~~~~-~~--~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~dv~kal~~G 281 (349)
-+.+++..+. .. |+|+|.++.-..+... .. +..++.+.++++.+.. .+||++-||| +.+++.++++.|
T Consensus 109 h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~G 187 (755)
T PRK09517 109 ETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATG 187 (755)
T ss_pred CCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcC
Confidence 4666665432 23 5999999753322211 11 2246777777776621 3999999999 779999999999
Q ss_pred CCEEEEchHHHH
Q 018919 282 ASGIFIGRPVVY 293 (349)
Q Consensus 282 A~~V~ig~~~l~ 293 (349)
|++|.+-++++.
T Consensus 188 a~giAvisai~~ 199 (755)
T PRK09517 188 IDGLCVVSAIMA 199 (755)
T ss_pred CCEEEEehHhhC
Confidence 999999999873
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.1 Score=42.69 Aligned_cols=182 Identities=17% Similarity=0.118 Sum_probs=107.7
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+.+-..+.|+.+++ + ++...+.||..+ ... .+.+.++. . +...
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Confidence 47778887544444555566788888888876653 2 334456665322 222 34556663 3 5667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.+.++.+++.|++++.+. .|.. . + .+.+- .+..+.+.+.+++||++=..
T Consensus 90 ~i~~~~~a~~~Gadav~~~--pP~y-----------~-~-----------~~~~~i~~~f~~va~~~~lpi~lYn~~g~~ 144 (303)
T PRK03620 90 AIEYAQAAERAGADGILLL--PPYL-----------T-E-----------APQEGLAAHVEAVCKSTDLGVIVYNRDNAV 144 (303)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCC-----------C-C-----------CCHHHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 7889999999999999762 2210 0 0 01121 56677888888999987542
Q ss_pred cCHHHHHHHH-Hc-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEEEEch
Q 018919 213 LTAEDARIAV-QA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 ~~~~~a~~a~-~~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V~ig~ 289 (349)
.+++...++. +. .+-+|.-+. .++..+.++.+..++++.|+ +| -.+. ..+..++.+||++...+.
T Consensus 145 l~~~~l~~L~~~~pni~giK~s~----------~d~~~~~~~~~~~~~~f~vl-~G-~d~~e~~~~~~~~~G~~G~is~~ 212 (303)
T PRK03620 145 LTADTLARLAERCPNLVGFKDGV----------GDIELMQRIVRALGDRLLYL-GG-LPTAEVFAAAYLALGVPTYSSAV 212 (303)
T ss_pred CCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEE-eC-CCcchhhHHHHHhCCCCEEEecH
Confidence 4677777776 53 233333321 13445555555554455544 33 2211 234456789999998887
Q ss_pred HHH
Q 018919 290 PVV 292 (349)
Q Consensus 290 ~~l 292 (349)
+-+
T Consensus 213 an~ 215 (303)
T PRK03620 213 FNF 215 (303)
T ss_pred Hhh
Confidence 544
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.019 Score=57.78 Aligned_cols=232 Identities=21% Similarity=0.307 Sum_probs=132.3
Q ss_pred hccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH-
Q 018919 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (349)
Q Consensus 42 ~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~- 118 (349)
+||++.|+|... ...+++|++|.+- +.+++.|++.|||...+ +..|+.+.++.|..+++.. ++++++..
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvT------e~ema~~ma~~gg~GvI~~--n~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVT------ESRMAIAMAREGGIGVIHR--NMSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCccC------HHHHHHHHHhcCCCceeec--CCCHHHHHH
Confidence 699999999865 3456899999986 68899999999997654 6788888888888877753 34554432
Q ss_pred ---hhCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCC----CCC-chhHHhhhhcC--CC--CcCccccc
Q 018919 119 ---STGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP----RLG-RREADIKNRFT--LP--PFLTLKNF 184 (349)
Q Consensus 119 ---~~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p----~~g-~r~~d~~~~~~--~p--~~~~~~~~ 184 (349)
+... .....++..-.......+.++.+.+.++..+.+.=+.. ..| ...+|+..... .+ .-+.....
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~~~ 154 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEV 154 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCCCC
Confidence 2221 11111111111122344566666777877765532210 001 11233221000 00 00000000
Q ss_pred CCCCCCch--HHHHHHHHHh-----------------------------------cCCcEEEEEe-----cCHHHHHHHH
Q 018919 185 QGLDLGKM--DEDVKWLQTI-----------------------------------TKLPILVKGV-----LTAEDARIAV 222 (349)
Q Consensus 185 ~~~~~~~~--~~~i~~i~~~-----------------------------------~~~pv~vK~v-----~~~~~a~~a~ 222 (349)
. ...+.. .+.++.+++. -+..+++... .+.+.++.+.
T Consensus 155 ~-~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~ 233 (450)
T TIGR01302 155 I-TVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALV 233 (450)
T ss_pred E-EECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHHH
Confidence 0 000000 1112222111 0112233322 1246788899
Q ss_pred HcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 223 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 223 ~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
++|+|.|.+...-|+ ....++.+.++++.+. ++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 234 ~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~~-~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 234 KAGVDVIVIDSSHGH----SIYVIDSIKEIKKTYP-DLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HhCCCEEEEECCCCc----HhHHHHHHHHHHHhCC-CCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 999999999763331 2345677888877653 688888 99999999999999999999766
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.1 Score=42.41 Aligned_cols=107 Identities=18% Similarity=0.285 Sum_probs=72.3
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+.-. +.|+|.+-++. ||-+ .+.| .++.|.+|++.+ ++|++.=||=..+ +++.|+..+|..-|
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~Ki 229 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLY---SKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKV 229 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCC---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4678887765 58999999874 5543 2322 578999999988 7888877765544 56677999999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|.+..+... .. ..-.....+.+++..+..|..+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 230 NVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977554321 00 1123334455666677777777754
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.021 Score=56.35 Aligned_cols=67 Identities=12% Similarity=0.248 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+.++.+.++|+|.|++....|. +....+.+.++++.++ +++ +..|+|.|.+++.+++.+|||+|.+|
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p-~~~-vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYP-NLD-LIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCC-CCc-EEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 6789999999999998754331 2334577778877653 455 45688999999999999999999877
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.14 Score=49.32 Aligned_cols=149 Identities=19% Similarity=0.146 Sum_probs=84.1
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEE-ec--C-CC-----CCC----H----HHHHhhCCCceEEEEeecC
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LS--S-WS-----TSS----V----EEVASTGPGIRFFQLYVYK 133 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~--~-~~-----~~~----~----e~i~~~~~~~~~~Ql~~~~ 133 (349)
..|++++=.+. +++.-..+++.+.++|+.++ +. . .. ... . +++++....|.++.+.+
T Consensus 101 ~~pvi~sI~g~----~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p-- 174 (334)
T PRK07565 101 DIPVIASLNGS----SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSP-- 174 (334)
T ss_pred CCcEEEEeccC----CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCC--
Confidence 46776555332 33444578888888886544 21 1 00 001 1 22333223566776643
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCC-CCCchHHHHHHHHHhcCCcEE-EEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-DLGKMDEDVKWLQTITKLPIL-VKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~pv~-vK~ 211 (349)
+.+...+.++.++++|+++|.++-..+... -|....-..+. .. .++. ..+..++.+.++++..++||+ +.+
T Consensus 175 ~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~---~d~~~~~~~~~-~g---lsg~~~~~~al~~v~~~~~~~~ipIig~GG 247 (334)
T PRK07565 175 YFSNLANMAKRLDAAGADGLVLFNRFYQPD---IDLETLEVVPG-LV---LSTPAELRLPLRWIAILSGRVGADLAATTG 247 (334)
T ss_pred CchhHHHHHHHHHHcCCCeEEEECCcCCCC---cChhhcccccC-CC---CCCchhhhHHHHHHHHHHhhcCCCEEEECC
Confidence 333456788889999999998753322110 01100000000 00 0010 111116778888888899986 556
Q ss_pred ecCHHHHHHHHHcCCCEEEEe
Q 018919 212 VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+.+.+||.+++.+|||+|.+.
T Consensus 248 I~s~~Da~e~l~aGA~~V~v~ 268 (334)
T PRK07565 248 VHDAEDVIKMLLAGADVVMIA 268 (334)
T ss_pred CCCHHHHHHHHHcCCCceeee
Confidence 899999999999999999985
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.19 Score=47.58 Aligned_cols=152 Identities=23% Similarity=0.198 Sum_probs=83.9
Q ss_pred cCcceeecccccccccCChhhHHHHHHHHHcC-CeEE-ecC------C-CC---CCH---HH----HHhhCCCceEEEEe
Q 018919 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMT-LSS------W-ST---SSV---EE----VASTGPGIRFFQLY 130 (349)
Q Consensus 70 ~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G-~~~~-~~~------~-~~---~~~---e~----i~~~~~~~~~~Ql~ 130 (349)
+..|++++=++. +++.-...++.++++| +.++ +.- . +. ... .+ +++....+.++.+-
T Consensus 90 ~~~p~i~si~g~----~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGS----TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccC----CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 356877665432 3444457788888888 6554 311 0 00 111 22 22222345666653
Q ss_pred ecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccccCC-CCCCchHHHHHHHHHhcCCcEE
Q 018919 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQG-LDLGKMDEDVKWLQTITKLPIL 208 (349)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~~~~-~~~~~~~~~i~~i~~~~~~pv~ 208 (349)
. +.+.+.+.++.++++|++++.+. ++. .+.+. +.+... |. +.......+ ...+..++.++++++.+++||+
T Consensus 166 ~--~~~~~~~~a~~l~~~G~d~i~~~-nt~-~g~~~-~~~~~~--~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi 238 (301)
T PRK07259 166 P--NVTDIVEIAKAAEEAGADGLSLI-NTL-KGMAI-DIKTRK--PILANVTGGLSGPAIKPIALRMVYQVYQAVDIPII 238 (301)
T ss_pred C--CchhHHHHHHHHHHcCCCEEEEE-ccc-ccccc-ccccCc--eeecCCcCccCCcCcccccHHHHHHHHHhCCCCEE
Confidence 2 44456778889999999998652 111 11110 000000 00 000000000 0112227889999998899986
Q ss_pred -EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 209 -VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 209 -vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+.++.+++++.+++.+|||.|.+.
T Consensus 239 ~~GGI~~~~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 239 GMGGISSAEDAIEFIMAGASAVQVG 263 (301)
T ss_pred EECCCCCHHHHHHHHHcCCCceeEc
Confidence 445689999999999999999883
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.046 Score=49.24 Aligned_cols=72 Identities=24% Similarity=0.269 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+.|+...+.||++|.+....+. ..+ ..+.+..+++.+ ++||+.-|+|++..++..++++|||+|.++.+.+
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~-~~g---~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKY-FQG---SLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccc-cCC---CHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 37789999999999987532211 112 235566666655 7999999999999999999999999999887543
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.11 Score=46.23 Aligned_cols=117 Identities=21% Similarity=0.109 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~ 211 (349)
+.+...+.++.+ +.|.+.++++... . ..+ .+.++.+|+.. +..+++-.
T Consensus 10 ~~~~a~~~~~~l-~~~v~~iev~~~l----------~-------------------~~~g~~~i~~l~~~~~~~~i~~d~ 59 (206)
T TIGR03128 10 DIEEALELAEKV-ADYVDIIEIGTPL----------I-------------------KNEGIEAVKEMKEAFPDRKVLADL 59 (206)
T ss_pred CHHHHHHHHHHc-ccCeeEEEeCCHH----------H-------------------HHhCHHHHHHHHHHCCCCEEEEEE
Confidence 556667777777 6788888874210 0 011 46788888875 44555432
Q ss_pred -ecCHH--HHHHHHHcCCCEEEEecCCCCCCCCchhh-HHHHHHHHHHhcCCCcEEEe-cCCCCH-HHHHHHHHhCCCEE
Q 018919 212 -VLTAE--DARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLD-GGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 212 -v~~~~--~a~~a~~~G~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvia~-GGI~~~-~dv~kal~~GA~~V 285 (349)
+.++. +++.+.++|+|.|+++. . ..+.. .+.+..+.+ . +++++.+ -+..+. +++..+..+|+|.|
T Consensus 60 k~~d~~~~~~~~~~~~Gad~i~vh~--~----~~~~~~~~~i~~~~~-~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v 130 (206)
T TIGR03128 60 KTMDAGEYEAEQAFAAGADIVTVLG--V----ADDATIKGAVKAAKK-H--GKEVQVDLINVKDKVKRAKELKELGADYI 130 (206)
T ss_pred eeccchHHHHHHHHHcCCCEEEEec--c----CCHHHHHHHHHHHHH-c--CCEEEEEecCCCChHHHHHHHHHcCCCEE
Confidence 23543 68999999999999842 2 11112 233333332 2 6777765 355554 67777888899999
Q ss_pred EEch
Q 018919 286 FIGR 289 (349)
Q Consensus 286 ~ig~ 289 (349)
.+..
T Consensus 131 ~~~p 134 (206)
T TIGR03128 131 GVHT 134 (206)
T ss_pred EEcC
Confidence 8864
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.18 Score=45.62 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCH
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTA 215 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~ 215 (349)
...+.++.+++.|++.+.++-... . .. + ..+..|+.++++++..++||++-+ +.++
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~~~-----~-----~~--~-----------~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~ 195 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGRTR-----E-----QR--Y-----------SGPADWDYIAEIKEAVSIPVIANGDIFSL 195 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCH-----H-----Hc--C-----------CCCCCHHHHHHHHhCCCCeEEEeCCCCCH
Confidence 667888899999999987653211 0 00 0 011127889999998899988755 5799
Q ss_pred HHHHHHHHc-CCCEEEEe
Q 018919 216 EDARIAVQA-GAAGIIVS 232 (349)
Q Consensus 216 ~~a~~a~~~-G~d~I~v~ 232 (349)
+++..+.+. |+|+|.+.
T Consensus 196 ~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 196 EDALRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHHHHHhcCCCEEEEc
Confidence 999999997 89999883
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.17 Score=48.05 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=61.9
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc----ccCCCCCCch-HHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK----NFQGLDLGKM-DEDVK 197 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~----~~~~~~~~~~-~~~i~ 197 (349)
.|.++.|-. +.+...+.++.++++|+++|.+. ++-. +...-|....-..+ .+..+ ...|--.... |+.|.
T Consensus 169 ~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~~-~~~~~~~~gg~sG~a~~p~~l~~v~ 243 (299)
T cd02940 169 IPVIAKLTP--NITDIREIARAAKEGGADGVSAI-NTVN-SLMGVDLDGTPPAP-GVEGKTTYGGYSGPAVKPIALRAVS 243 (299)
T ss_pred CCeEEECCC--CchhHHHHHHHHHHcCCCEEEEe-cccc-cccccccccCCccc-cccCCCCcCcccCCCcchHHHHHHH
Confidence 467777643 44456788899999999998752 1110 00000000000000 00000 0111111223 88999
Q ss_pred HHHHhc--CCcEE-EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 198 WLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 198 ~i~~~~--~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++++.+ ++||+ ..++.+.+++.+++.+|||+|.+.
T Consensus 244 ~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ 281 (299)
T cd02940 244 QIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVC 281 (299)
T ss_pred HHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEc
Confidence 999999 89975 445789999999999999999884
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.059 Score=52.19 Aligned_cols=68 Identities=22% Similarity=0.313 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+-+..+.++|+|.|++...-|+ .....+.+.++++..+ ++||| .|.|-|++-+...+..|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~-~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFP-DVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHST-TSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHHHHHhCC-CceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 47788899999999999753221 2334677888887764 78888 577999999988888999999998
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.3 Score=41.82 Aligned_cols=108 Identities=25% Similarity=0.328 Sum_probs=76.2
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+... +.|+|.+-++. ||.+. ..|. .++.|.+|.+.+ ++|++.=||=..+ +++.+++..|..-|
T Consensus 158 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~--~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 158 TDPEEAKEFVKLTGVDSLAAAIGNVHGVYK--GEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred CCHHHHHHHHhccCCcEEeeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 3678887766 48999999874 55432 2233 688999999988 7999999988888 57778999999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|.+..+... .. ..-.....+.+++..+..|..+|..
T Consensus 234 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 234 NIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred EcChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543211 00 1223344556677777777777754
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.3 Score=41.78 Aligned_cols=179 Identities=16% Similarity=0.112 Sum_probs=106.6
Q ss_pred cceeecccccccccCChhhHHHHHHHHH-cCCeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChh
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASA-AGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRN 136 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~-~G~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~ 136 (349)
.|.++.|+.-.+-.+.++-..+.+-..+ .|+.+++ + ++.+.+.+|..+ ... .+.++++.. .+.+
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~-~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS-VNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC-CCHH
Confidence 4777788765444555666678888888 8876553 2 334556666332 222 345666533 4556
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe---
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV--- 212 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v--- 212 (349)
...++++.+++.|++++.+.- |.. . +. +++- .+..+.+.+.+++||++=..
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~~--P~y-----------~-~~-----------~~~~l~~~f~~va~a~~lPv~iYn~P~~ 141 (293)
T PRK04147 87 EAQELAKYATELGYDAISAVT--PFY-----------Y-PF-----------SFEEICDYYREIIDSADNPMIVYNIPAL 141 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeC--CcC-----------C-CC-----------CHHHHHHHHHHHHHhCCCCEEEEeCchh
Confidence 677889999999999988642 311 0 10 1122 56678888888999988654
Q ss_pred ----cCHHHHHHHHHc-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 213 ----LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 213 ----~~~~~a~~a~~~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+++...++.+. .+-+|.-+. ..+..+.++.+..+ +..|+ +|. ..-+...+.+|+++++.
T Consensus 142 tg~~l~~~~l~~L~~~pnvvgiK~s~----------~d~~~~~~~~~~~~-~~~v~-~G~---d~~~~~~l~~G~~G~is 206 (293)
T PRK04147 142 TGVNLSLDQFNELFTLPKVIGVKQTA----------GDLYQLERIRKAFP-DKLIY-NGF---DEMFASGLLAGADGAIG 206 (293)
T ss_pred hccCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhCC-CCEEE-Eee---hHHHHHHHHcCCCEEEe
Confidence 356777777653 222332221 12344445555443 44443 342 24466788899999988
Q ss_pred chHH
Q 018919 288 GRPV 291 (349)
Q Consensus 288 g~~~ 291 (349)
+..-
T Consensus 207 ~~~n 210 (293)
T PRK04147 207 STYN 210 (293)
T ss_pred chhh
Confidence 7743
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.069 Score=48.23 Aligned_cols=39 Identities=23% Similarity=0.465 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCcEEEE-EecCHHHHHHHHHcCCCEEEEe
Q 018919 194 EDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
..|+-++++.++||+|- ++-++.+|-.+.|.|+|+|.+-
T Consensus 172 ~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 172 YNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred HHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 56888888889999875 3678999999999999999773
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.15 Score=47.49 Aligned_cols=40 Identities=35% Similarity=0.395 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++++|+.+++|+++.. +.++++++.+.+. ||+++|..
T Consensus 189 ~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 189 AELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 5679999998899999876 5799999999986 99999953
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.23 Score=47.53 Aligned_cols=72 Identities=21% Similarity=0.386 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCH
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTA 215 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~ 215 (349)
.+.+.++++++.|++.|.+|-..+. .++ ..+..|+.++++++.+++||+.-+ +.++
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~---------~~~--------------~~~~~~~~i~~i~~~~~ipvi~nGgI~~~ 204 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRA---------QGY--------------SGEANWDIIARVKQAVRIPVIGNGDIFSP 204 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEccccc---------ccC--------------CCchhHHHHHHHHHcCCCcEEEeCCCCCH
Confidence 3567888999999999987632210 011 012228889999999999987644 6899
Q ss_pred HHHHHHH-HcCCCEEEE
Q 018919 216 EDARIAV-QAGAAGIIV 231 (349)
Q Consensus 216 ~~a~~a~-~~G~d~I~v 231 (349)
+++..++ ..|+|+|.+
T Consensus 205 ~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 205 EDAKAMLETTGCDGVMI 221 (319)
T ss_pred HHHHHHHHhhCCCEEEE
Confidence 9999998 589999988
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.16 Score=48.59 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=52.5
Q ss_pred HHHHHHHHcC--CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 216 EDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 216 ~~a~~a~~~G--~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+.+..+.++| +|.|++...-|+ ....++.+.++++.. ..|.+..|.|-+++++..++.+|||+|.+|
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 4467788889 799999753221 234567788887766 568888999999999999999999999887
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.11 Score=50.38 Aligned_cols=99 Identities=22% Similarity=0.209 Sum_probs=64.1
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc-CCCCCC---ch-HHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF-QGLDLG---KM-DEDVK 197 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~-~~~~~~---~~-~~~i~ 197 (349)
.|.++.|-...+.+.+.+.++.++++|+++|.++-..... . ++. -+. ..+. .++-.+ .. |+.++
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~--~--~~~----~~~---~~~~~gg~SG~~~~~~~l~~v~ 280 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSR--D--GLK----GLP---NADEAGGLSGRPLFERSTEVIR 280 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcccc--c--ccc----ccc---cCCCCCCcccHHHHHHHHHHHH
Confidence 4677777644444457788899999999999875433210 0 000 000 0000 011111 12 77899
Q ss_pred HHHHhc--CCcEE-EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 198 WLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 198 ~i~~~~--~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++++.. ++||+ +.++.+.+++.+.+.+|||+|.+.
T Consensus 281 ~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 281 RLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred HHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 999988 78986 667899999999999999999774
|
|
| >PTZ00411 transaldolase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.63 Score=44.86 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC-------------CchhhHHHHHHHHHHhc--C
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKATQ--G 258 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~-------------~~~~~~~~l~~i~~~~~--~ 258 (349)
+.++.+.+. ++++-+-.+.+...|..|.++|++.|... =||-.+ .+.+....+.++.+..+ +
T Consensus 151 ~Aa~~L~~e-GI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g 227 (333)
T PTZ00411 151 QAAKALEKE-GIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHG 227 (333)
T ss_pred HHHHHHHHC-CCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHHHHHcC
Confidence 445666554 89998888999999999999999988764 122111 13344566666666542 2
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 259 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 259 ~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
--..|....+|+..++.+ .+|||.+-|.-.++..+..
T Consensus 228 ~~T~Im~ASfRn~~qi~~--laG~D~lTi~p~ll~~L~~ 264 (333)
T PTZ00411 228 YKTIVMGASFRNTGEILE--LAGCDKLTISPKLLEELAN 264 (333)
T ss_pred CCeEEEecccCCHHHHHH--HHCCCEEeCCHHHHHHHHh
Confidence 234566666999999987 4899999999888876643
|
|
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.62 Score=41.87 Aligned_cols=156 Identities=22% Similarity=0.291 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCeE---EecCCCC--CCHHHHH---hhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 92 ATARAASAAGTIM---TLSSWST--SSVEEVA---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 92 ~la~aa~~~G~~~---~~~~~~~--~~~e~i~---~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
.=+++|.++|+.+ ++...|+ .++++.+ ...|....+-+|.+.+.+. ..+.+++.+.+++.+|-+-+
T Consensus 13 eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~---i~~i~~~~~ld~VQlHG~e~--- 86 (208)
T COG0135 13 EDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEE---ILEIAEELGLDAVQLHGDED--- 86 (208)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHH---HHHHHHhcCCCEEEECCCCC---
Confidence 4456666666443 2222232 3455433 3333233556676655544 34455677899998875421
Q ss_pred chhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCH---HHHHHHHHcCCCEEEEecC-----C
Q 018919 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTA---EDARIAVQAGAAGIIVSNH-----G 235 (349)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~---~~a~~a~~~G~d~I~v~~~-----g 235 (349)
.+.++++++..++||+--..... .........-+|.+.+... |
T Consensus 87 -----------------------------~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~G 137 (208)
T COG0135 87 -----------------------------PEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPG 137 (208)
T ss_pred -----------------------------HHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCC
Confidence 46788888887888873333222 2344455566899999874 3
Q ss_pred CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC-CEEEEchH
Q 018919 236 ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA-SGIFIGRP 290 (349)
Q Consensus 236 g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA-~~V~ig~~ 290 (349)
|+ +-.-+|+.+... ....|++..||+ +++.|.+|++++. .+|=+.|-
T Consensus 138 Gt---G~~fDW~~l~~~----~~~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSG 185 (208)
T COG0135 138 GT---GQTFDWNLLPKL----RLSKPVMLAGGL-NPDNVAEAIALGPPYGVDVSSG 185 (208)
T ss_pred CC---CcEECHHHhccc----cccCCEEEECCC-CHHHHHHHHHhcCCceEEeccc
Confidence 32 223356666554 126789999997 5699999999987 88887764
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.6 Score=41.28 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=72.2
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+.-. +.|+|.+-++. ||.. .+.| .++.|.++++.+ ++|++.=||=..+ +++.|++.+|..-|
T Consensus 155 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPY---KGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKV 229 (284)
T ss_pred CCHHHHHHHHHHHCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 3678887765 68999999874 5543 3333 578899998887 7898887776655 45667899999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|-+..+... .. ..-.....+.+++..+..|..+|..
T Consensus 230 Ni~T~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 230 NIDTNIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976543210 00 1123344456666677777777653
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.043 Score=49.84 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH--hCCCEEEEchHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPVV 292 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~--~GA~~V~ig~~~l 292 (349)
.+.|+...+.|+|.+.+..--+. .+.+..++.+.++.+. +|+..+|||++.+|+.+++. .||+-|.+||..+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 36678888999999987543221 1445567888888774 58999999999999988865 2799999999754
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.14 Score=49.32 Aligned_cols=86 Identities=20% Similarity=0.299 Sum_probs=61.3
Q ss_pred ceEEEEeecCCh-h-HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHH
Q 018919 124 IRFFQLYVYKDR-N-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQT 201 (349)
Q Consensus 124 ~~~~Ql~~~~~~-~-~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~ 201 (349)
|..+.+-...|. + ...+.++.++++|++++.||..+.. ..+. .+..|+.|+++++
T Consensus 138 PVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~---------~~y~--------------~~ad~~~I~~vk~ 194 (323)
T COG0042 138 PVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRA---------QGYL--------------GPADWDYIKELKE 194 (323)
T ss_pred CeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHH---------hcCC--------------CccCHHHHHHHHH
Confidence 444444333333 3 3567888889999999999875531 1111 1222999999999
Q ss_pred hcC-CcEEEEE-ecCHHHHHHHHH-cCCCEEEEe
Q 018919 202 ITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 232 (349)
Q Consensus 202 ~~~-~pv~vK~-v~~~~~a~~a~~-~G~d~I~v~ 232 (349)
..+ +||+.-+ |.++++|+.+++ .|+|+|.+.
T Consensus 195 ~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 195 AVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred hCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 998 9999876 579999999887 679999884
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.13 Score=49.21 Aligned_cols=86 Identities=8% Similarity=0.197 Sum_probs=60.8
Q ss_pred ceEEEEeec-CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHH
Q 018919 124 IRFFQLYVY-KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQT 201 (349)
Q Consensus 124 ~~~~Ql~~~-~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~ 201 (349)
+..+.+-.. .+.+...+.++.++++|++.|.||-.+.. ++|. .+.. |+.++++++
T Consensus 135 pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---------~~y~--------------g~~~~~~~i~~ik~ 191 (312)
T PRK10550 135 PVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE---------DGYR--------------AEHINWQAIGEIRQ 191 (312)
T ss_pred ceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---------cCCC--------------CCcccHHHHHHHHh
Confidence 555654322 23344678999999999999988753321 1121 1222 889999999
Q ss_pred hcCCcEEEEE-ecCHHHHHHHH-HcCCCEEEEe
Q 018919 202 ITKLPILVKG-VLTAEDARIAV-QAGAAGIIVS 232 (349)
Q Consensus 202 ~~~~pv~vK~-v~~~~~a~~a~-~~G~d~I~v~ 232 (349)
..++||+.-| +.++++++.++ +.|||+|.+.
T Consensus 192 ~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 192 RLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred hcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 9999987654 68999999977 5889999883
|
|
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.52 Score=47.63 Aligned_cols=210 Identities=21% Similarity=0.283 Sum_probs=106.7
Q ss_pred ccccccCC-CCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHH-------HHHh
Q 018919 48 FRPRILID-VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE-------EVAS 119 (349)
Q Consensus 48 l~p~~l~~-~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e-------~i~~ 119 (349)
+-|+.... ...+.++|.|-.+.=-.|+++|.|.-.+ .+..+..|++++|--.=+...+-.+.| .+..
T Consensus 10 yaPklvk~~~Gr~~v~TkfsrLtGr~PillaGMTPtT-----Vdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~ql~~ 84 (717)
T COG4981 10 YAPKLVKLPDGRVKVSTKFSRLTGRSPILLAGMTPTT-----VDPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQLVS 84 (717)
T ss_pred hCcceEecCCCcEEEeechhhhcCCCCeeecCCCCCc-----CCHHHHHHHhcCCceeeecCCcccCHHHHHHHHHHHHh
Confidence 34665543 2345556665443334699999996544 245788888888866555433333322 2221
Q ss_pred h-CCCc-eEE-EEeecCChhH------HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC
Q 018919 120 T-GPGI-RFF-QLYVYKDRNV------VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (349)
Q Consensus 120 ~-~~~~-~~~-Ql~~~~~~~~------~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~ 190 (349)
. .|+. .-| -+|. |+-. -..+++.+++.|+..-.+++..- +|. .
T Consensus 85 ~lepG~t~qfN~ifl--dpylw~~qig~krLv~kara~G~~I~gvvIsAG--------------IP~------------l 136 (717)
T COG4981 85 LLEPGRTAQFNSIFL--DPYLWKLQIGGKRLVQKARASGAPIDGVVISAG--------------IPS------------L 136 (717)
T ss_pred ccCCCccceeeEEEe--chHHhhhcCChHHHHHHHHhcCCCcceEEEecC--------------CCc------------H
Confidence 1 1221 112 1232 3322 23577888888865544444321 111 0
Q ss_pred ch-HHHHHHHHHhcCCcEE-EEEecCHHHHHH----HHHcCCCEEEEecCCCCCC------CCchhhHHHHHHHHHHhcC
Q 018919 191 KM-DEDVKWLQTITKLPIL-VKGVLTAEDARI----AVQAGAAGIIVSNHGARQL------DYVPATIMALEEVVKATQG 258 (349)
Q Consensus 191 ~~-~~~i~~i~~~~~~pv~-vK~v~~~~~a~~----a~~~G~d~I~v~~~gg~~~------~~~~~~~~~l~~i~~~~~~ 258 (349)
+. .+.|+.+-. -++|-+ .| --+.|.++. |-+.----|++.-.|||.. |-..+-+....++++. +
T Consensus 137 e~A~ElI~~L~~-~G~~yv~fK-PGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~--~ 212 (717)
T COG4981 137 EEAVELIEELGD-DGFPYVAFK-PGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSR--D 212 (717)
T ss_pred HHHHHHHHHHhh-cCceeEEec-CCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhcC--C
Confidence 11 223333322 255532 23 223343322 2222222344443444420 1111222333444332 4
Q ss_pred CCcEEEecCCCCHHHHHHHHH------hC-----CCEEEEchHHHHH
Q 018919 259 RIPVFLDGGVRRGTDVFKALA------LG-----ASGIFIGRPVVYS 294 (349)
Q Consensus 259 ~ipvia~GGI~~~~dv~kal~------~G-----A~~V~ig~~~l~~ 294 (349)
++.+|+.|||.+++|...+|- .| .|++.+|++.+..
T Consensus 213 NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMat 259 (717)
T COG4981 213 NIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMAT 259 (717)
T ss_pred CEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhh
Confidence 799999999999999987762 23 6999999988753
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.11 Score=49.73 Aligned_cols=68 Identities=18% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHHHHHHHHcC--CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 215 AEDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 215 ~~~a~~a~~~G--~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+-++.+.++| +|.|++...-|+ ....++.+..+++..+ -+.+..|-|-+++++..++.+|||+|-+|
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p--~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFP--EHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCC--CCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 45678888885 999999764332 2335677888877663 35666677999999999999999999877
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK12309 transaldolase/EF-hand domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.88 Score=44.91 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC-------------CchhhHHHHHHHHHHhc---
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKATQ--- 257 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~-------------~~~~~~~~l~~i~~~~~--- 257 (349)
+.++.+.+. ++++-+-.+.+.+.|..|.++|++.|... =||-.+ ...|....+.++.+..+
T Consensus 145 ~A~~~L~~~-GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~ 221 (391)
T PRK12309 145 KAAEVLEKE-GIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFG 221 (391)
T ss_pred HHHHHHHHC-CCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcC
Confidence 445566543 89998888999999999999999988763 222111 11234556666666553
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.+..|++ ..+|+..++.+ .+|||.+-|.-.++..+.
T Consensus 222 ~~T~Im~-ASfRn~~~v~~--laG~d~~Ti~p~ll~~L~ 257 (391)
T PRK12309 222 YKTEVMG-ASFRNIGEIIE--LAGCDLLTISPKLLEQLR 257 (391)
T ss_pred CCcEEEe-cccCCHHHHHH--HHCCCeeeCCHHHHHHHH
Confidence 2344554 45999999987 589999999988876653
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.08 Score=49.80 Aligned_cols=92 Identities=18% Similarity=0.296 Sum_probs=60.4
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-... +..-..+.+..+++.+.+++||++.=|=.+-.|+++ |-++|||+|++-.|++
T Consensus 28 i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 28 VNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred HHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 45577899999999766442111 111123445555666667899997777666777765 3458999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. ..++++.++++.+.+
T Consensus 108 ~~---~~~~~i~~~f~~va~ 124 (280)
T PLN02417 108 GK---TSQEGLIKHFETVLD 124 (280)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 63 245666666655544
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.067 Score=49.65 Aligned_cols=39 Identities=36% Similarity=0.475 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.++++|+.+++|+.+.. +.++++++++.++ +|+|+|.
T Consensus 194 ~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 194 KELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred HHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 5679999999999999875 6899999999999 9999994
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.079 Score=50.22 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=61.7
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-... +..-..+.+..+++.+.+++||++.=|-.+-.|.++ |-++|||+|++..|++
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 45677899999999765442111 112234555666666677899997777677777654 4458999999999998
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~e 313 (349)
+.. .++++.+++..+.+.
T Consensus 107 ~~~---~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 107 NKP---NQEALYDHFAEVADA 124 (294)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 456666666665554
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.19 Score=46.32 Aligned_cols=98 Identities=22% Similarity=0.345 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCcEEEEEec---CH----HHHHHHHHcCCCEEEEec--------C-CCCCCCCchhhHHHHHHHHHHh
Q 018919 193 DEDVKWLQTITKLPILVKGVL---TA----EDARIAVQAGAAGIIVSN--------H-GARQLDYVPATIMALEEVVKAT 256 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~---~~----~~a~~a~~~G~d~I~v~~--------~-gg~~~~~~~~~~~~l~~i~~~~ 256 (349)
...++.+...+.+|+++-+-. +. +.++++.++|+++|.+-. | |+..+-.-....+.+..++++.
T Consensus 58 ~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~ 137 (243)
T cd00377 58 LAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDAR 137 (243)
T ss_pred HHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHH
Confidence 456788888889998875432 33 446778889999999932 1 1111111111233444445554
Q ss_pred cC--CCcEEEe--------cCCCCHHHHHH-HHHhCCCEEEEchH
Q 018919 257 QG--RIPVFLD--------GGVRRGTDVFK-ALALGASGIFIGRP 290 (349)
Q Consensus 257 ~~--~ipvia~--------GGI~~~~dv~k-al~~GA~~V~ig~~ 290 (349)
.+ +++|++- .|+...-.-.+ +.++|||+|++-.+
T Consensus 138 ~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 138 DDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred hccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 44 6888877 33333333333 44589999998754
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.6 Score=42.22 Aligned_cols=127 Identities=22% Similarity=0.316 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCCcEEEEEec--CHHHH----HHHHHcCCCEEEEecCCCCCCCC-ch--hhHHHHHHHHHHhcCCCcEE
Q 018919 193 DEDVKWLQTITKLPILVKGVL--TAEDA----RIAVQAGAAGIIVSNHGARQLDY-VP--ATIMALEEVVKATQGRIPVF 263 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~--~~~~a----~~a~~~G~d~I~v~~~gg~~~~~-~~--~~~~~l~~i~~~~~~~ipvi 263 (349)
.+.++++-+ ++.||++|.-+ +.++. +.....|-+-+++--.|.+.... .. ..+..++.+++.. ..|||
T Consensus 190 ~~LL~~va~-~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi 266 (335)
T PRK08673 190 FDLLKEVGK-TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVI 266 (335)
T ss_pred HHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEE
Confidence 455666654 69999999863 56653 44556788777775445544321 12 2456666666654 69999
Q ss_pred EecCCCCH------HHHHHHHHhCCCEEEEchHHHHHHh-hcCHHHH-HHHHHHHHHHHHHHHHHcC
Q 018919 264 LDGGVRRG------TDVFKALALGASGIFIGRPVVYSLA-AEGEKGV-RRVLEMLREEFELAMALSG 322 (349)
Q Consensus 264 a~GGI~~~------~dv~kal~~GA~~V~ig~~~l~~~~-~~G~~gv-~~~l~~l~~el~~~m~~~G 322 (349)
++..=.++ .-...|+++|||+++|-.-+--.-+ +.|...+ -+-++.+.++++..-..+|
T Consensus 267 ~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 267 VDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred EeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 87654444 3456788899999999875432111 2232211 1234556666666555555
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.16 Score=48.86 Aligned_cols=72 Identities=18% Similarity=0.369 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE-ecC
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG-VLT 214 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~-v~~ 214 (349)
...+.++.++++|+++|.+|-.+. +. ...... |+.++++++.+++||+.-+ +.+
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~---------------~~---------~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s 205 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTR---------------AC---------LFNGEAEYDSIRAVKQKVSIPVIANGDITD 205 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcc---------------cc---------ccCCCcChHHHHHHHHhcCCcEEEeCCCCC
Confidence 466888899999999998764220 00 011112 8999999999999987654 679
Q ss_pred HHHHHHHHH-cCCCEEEEe
Q 018919 215 AEDARIAVQ-AGAAGIIVS 232 (349)
Q Consensus 215 ~~~a~~a~~-~G~d~I~v~ 232 (349)
+++++.+.+ .|+|+|.++
T Consensus 206 ~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 206 PLKARAVLDYTGADALMIG 224 (321)
T ss_pred HHHHHHHHhccCCCEEEEC
Confidence 999999997 799999883
|
|
| >cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.91 Score=43.41 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCC-------------chhhHHHHHHHHHHhc---
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKATQ--- 257 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~~--- 257 (349)
+.++.+.+. ++++-+-.+.+.+.+..|.++|++.|... =||-.++ ..+....+.++.+..+
T Consensus 139 ~A~~~L~~~-GI~vn~TlvFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~ 215 (313)
T cd00957 139 QAAKQLEKE-GIHCNLTLLFSFAQAVACAEAGVTLISPF--VGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFG 215 (313)
T ss_pred HHHHHHHHC-CCceeeeeecCHHHHHHHHHcCCCEEEee--cchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcC
Confidence 445566554 89999888999999999999999988764 1221111 1234556666665542
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.+..|+ ...+|+..++.+ .+|+|.+-+.-.++..+.
T Consensus 216 ~~T~vm-aASfRn~~~v~~--laG~d~~Ti~p~ll~~L~ 251 (313)
T cd00957 216 YKTKVM-GASFRNIGQILA--LAGCDYLTISPALLEELK 251 (313)
T ss_pred CCcEEE-ecccCCHHHHHH--HhCCCeEEcCHHHHHHHH
Confidence 234444 556999999986 589999999998887764
|
The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.056 Score=55.12 Aligned_cols=235 Identities=19% Similarity=0.265 Sum_probs=130.0
Q ss_pred Hhhccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH
Q 018919 40 RNAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (349)
Q Consensus 40 ~~~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i 117 (349)
..+||++.|+|... ...+++|++|.+- ...+..||+.|||.+.+ +..||.+.++.|..++++. ..+.|+.
T Consensus 21 ~ltfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q 92 (505)
T PLN02274 21 SYTYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQ 92 (505)
T ss_pred CCCccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHH
Confidence 35799999999865 3456888887775 35677899999998765 6689999999998887764 3455554
Q ss_pred Hh----hCC-CceEE-EEeecCChhHHHHHHHHHHHcCCCEEEEecCC----CCCC-chhHHhhhh---------cCCCC
Q 018919 118 AS----TGP-GIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNR---------FTLPP 177 (349)
Q Consensus 118 ~~----~~~-~~~~~-Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~----p~~g-~r~~d~~~~---------~~~p~ 177 (349)
.. ... ...+. ....-.......+.++.+.+.++..+.|.=+. -..| ...+|++.. +..+.
T Consensus 93 ~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~eIMt~~ 172 (505)
T PLN02274 93 AAIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTSD 172 (505)
T ss_pred HHHHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHHHhccC
Confidence 32 211 10000 00010111233455666667777776653220 0001 112333210 00000
Q ss_pred --cCcccccC--------------C---CCCC--c----h-HHHHHHHHHhc---------CCcEEEEE-e----cCHHH
Q 018919 178 --FLTLKNFQ--------------G---LDLG--K----M-DEDVKWLQTIT---------KLPILVKG-V----LTAED 217 (349)
Q Consensus 178 --~~~~~~~~--------------~---~~~~--~----~-~~~i~~i~~~~---------~~pv~vK~-v----~~~~~ 217 (349)
-++..... . ..|. . . .+++.+..+.- ...+.+.- + ...|-
T Consensus 173 ~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r 252 (505)
T PLN02274 173 DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKER 252 (505)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHH
Confidence 00000000 0 0000 0 0 12222222110 11233332 1 12367
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
++.+.++|+|.|.+....|. ....++.+.++++..+ +.+| ..|+|.|.+++..++++|||+|.+|
T Consensus 253 ~~~l~~ag~d~i~iD~~~g~----~~~~~~~i~~ik~~~p-~~~v-i~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 253 LEHLVKAGVDVVVLDSSQGD----SIYQLEMIKYIKKTYP-ELDV-IGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHcCCCEEEEeCCCCC----cHHHHHHHHHHHHhCC-CCcE-EEecCCCHHHHHHHHHcCcCEEEEC
Confidence 88999999999999764332 2335678888887652 3444 4578999999999999999999775
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.2 Score=48.82 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHcCCeEEecCCCCC--------CHHHHHhhCC---CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEec
Q 018919 89 GEYATARAASAAGTIMTLSSWSTS--------SVEEVASTGP---GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (349)
Q Consensus 89 ~~~~la~aa~~~G~~~~~~~~~~~--------~~e~i~~~~~---~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~ 157 (349)
.-..+++.+.+.|+.. +.-+... +++.+++... +...+-+.+-.+.+...++++++.+.|+|-|++.
T Consensus 99 vVe~Fv~ka~~nGidv-fRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciK- 176 (472)
T COG5016 99 VVEKFVEKAAENGIDV-FRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIK- 176 (472)
T ss_pred HHHHHHHHHHhcCCcE-EEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEee-
Confidence 3458999999999884 3333221 1222222221 1112222223456778889999999999998862
Q ss_pred CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe----cCHHHHHHHHHcCCCEEEEe
Q 018919 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV----LTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v----~~~~~a~~a~~~G~d~I~v~ 232 (349)
|. +|+.+|.. .+.|+.+|+.+++||-+-.= .+.-...+|.++|+|.|...
T Consensus 177 Dm-------------------------aGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTA 231 (472)
T COG5016 177 DM-------------------------AGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDTA 231 (472)
T ss_pred cc-------------------------cccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhhhh
Confidence 21 12346666 78999999999999987653 23344577999999999864
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.31 Score=46.99 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
++.+.+.++..+++++. .+.+.+.+..+.+.|++.+.|... ....+..|..+++. +.|||.+-|..+-+
T Consensus 78 ~~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KIaS~-------~~~n~pLL~~~A~~---gkPvilStGmatl~ 146 (329)
T TIGR03569 78 HRELKEYCESKGIEFLS-TPFDLESADFLEDLGVPRFKIPSG-------EITNAPLLKKIARF---GKPVILSTGMATLE 146 (329)
T ss_pred HHHHHHHHHHhCCcEEE-EeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHhc---CCcEEEECCCCCHH
Confidence 34566666777898875 567889999999999999999532 12245667766653 78999999999999
Q ss_pred HHHHHHH
Q 018919 273 DVFKALA 279 (349)
Q Consensus 273 dv~kal~ 279 (349)
++..|+.
T Consensus 147 Ei~~Av~ 153 (329)
T TIGR03569 147 EIEAAVG 153 (329)
T ss_pred HHHHHHH
Confidence 9988775
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=95.60 E-value=2.1 Score=40.36 Aligned_cols=179 Identities=17% Similarity=0.120 Sum_probs=103.0
Q ss_pred ceeecccccccccCChhhHHHHHHHHHc-CCeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChhH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAA-GTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~-G~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~ 137 (349)
|..+.|+.-.+-.+.++-..+++-..+. |+.+++ + ++...+.+|..+ ... -+.++++-. .+.+.
T Consensus 6 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ 84 (288)
T cd00954 6 AALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS-LNLKE 84 (288)
T ss_pred eceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC-CCHHH
Confidence 5566676433334445556777777777 866553 2 334456665322 222 234555432 35566
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhc-CCcEEEEEe---
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTIT-KLPILVKGV--- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~-~~pv~vK~v--- 212 (349)
..++++.+++.|++++.+.- |.. .+ .+.+ ..+..+.+.+.+ ++||++=..
T Consensus 85 ai~~a~~a~~~Gad~v~~~~--P~y------------~~-----------~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~ 139 (288)
T cd00954 85 SQELAKHAEELGYDAISAIT--PFY------------YK-----------FSFEEIKDYYREIIAAAASLPMIIYHIPAL 139 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeC--CCC------------CC-----------CCHHHHHHHHHHHHHhcCCCCEEEEeCccc
Confidence 77888999999999987632 211 01 0112 256788888888 899987543
Q ss_pred ----cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 213 ----LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 213 ----~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+++...++.+.. +-+|.-+ .+ .+..+.++.+..++++.|+... ...+..++.+||++.+.
T Consensus 140 tg~~l~~~~~~~L~~~pnivgiK~s--------~~--d~~~~~~~~~~~~~~~~v~~G~----d~~~~~~~~~G~~G~i~ 205 (288)
T cd00954 140 TGVNLTLEQFLELFEIPNVIGVKFT--------AT--DLYDLERIRAASPEDKLVLNGF----DEMLLSALALGADGAIG 205 (288)
T ss_pred cCCCCCHHHHHHHhcCCCEEEEEeC--------CC--CHHHHHHHHHhCCCCcEEEEec----hHHHHHHHHcCCCEEEe
Confidence 3567777777632 1222221 11 2344455555544355555332 24566788899999988
Q ss_pred chHH
Q 018919 288 GRPV 291 (349)
Q Consensus 288 g~~~ 291 (349)
|...
T Consensus 206 ~~~n 209 (288)
T cd00954 206 STYN 209 (288)
T ss_pred Chhh
Confidence 8643
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.9 Score=42.01 Aligned_cols=209 Identities=18% Similarity=0.176 Sum_probs=104.0
Q ss_pred ceeEcC-eecCcceeecccccccccCChh-----hHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCCh
Q 018919 62 NTTVLG-FKISMPIMIAPTAMQKMAHPEG-----EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDR 135 (349)
Q Consensus 62 s~~l~g-~~~~~Pi~iApm~~~~l~~~~~-----~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~ 135 (349)
..+|.+ +++++-|+.|||+.. ..+.++ ...+-+.-++ |+.+++++....+.+ ....++ ..-+|.....
T Consensus 4 P~~ig~g~~lkNRiv~apm~~~-~~~~~G~~t~~~~~yy~~rA~-g~glIi~e~~~v~~~--~~~~~~--~~~~~~d~~i 77 (353)
T cd04735 4 PFTLKNGVTLKNRFVMAPMTTY-SSNPDGTITDDELAYYQRRAG-GVGMVITGATYVSPS--GIGFEG--GFSADDDSDI 77 (353)
T ss_pred CEEcCCCeEEeCcceecccccC-ccCCCCCCCHHHHHHHHHHhC-CCCEEEECceEECcc--cCcCCC--CceecChhhh
Confidence 367777 999999999999632 222221 2232222223 455566544322211 011121 1223333334
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhH-Hhhhh--cCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREA-DIKNR--FTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~-d~~~~--~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
+.+.++++.+.+.|+..+ +-+.++ |.... +...+ ...|..+.........-..+ .++|+++.+.+
T Consensus 78 ~~~~~l~~~vh~~G~~i~-~QL~h~--G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f-------- 146 (353)
T cd04735 78 PGLRKLAQAIKSKGAKAI-LQIFHA--GRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAF-------- 146 (353)
T ss_pred HHHHHHHHHHHhCCCeEE-EEecCC--CCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHH--------
Confidence 556778888888898764 445443 21100 00000 00011000000000011123 56677777653
Q ss_pred ecCHHHHHHHHHcCCCEEEEec-CCC------------CC-CCCchh------hHHHHHHHHHHhc----CCCcEEE---
Q 018919 212 VLTAEDARIAVQAGAAGIIVSN-HGA------------RQ-LDYVPA------TIMALEEVVKATQ----GRIPVFL--- 264 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~-~gg------------~~-~~~~~~------~~~~l~~i~~~~~----~~ipvia--- 264 (349)
.+-|++|.++|+|+|-+.. ||. |. .++|.. ..+.+..++++++ .+++|..
T Consensus 147 ---~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s 223 (353)
T cd04735 147 ---GEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS 223 (353)
T ss_pred ---HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC
Confidence 2668899999999999963 332 11 123321 3456666666665 3455443
Q ss_pred -----ecCCCC--HHHHHHHHH-hCCCEEEEchH
Q 018919 265 -----DGGVRR--GTDVFKALA-LGASGIFIGRP 290 (349)
Q Consensus 265 -----~GGI~~--~~dv~kal~-~GA~~V~ig~~ 290 (349)
.||+.. ..++++.|+ .|+|.+-|...
T Consensus 224 ~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 224 PEEPEEPGIRMEDTLALVDKLADKGLDYLHISLW 257 (353)
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEeccC
Confidence 456542 234556665 79999998653
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.09 Score=50.22 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=60.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH----HhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal----~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-... +-.-..+.+..+++.+++++|||+.=|=.+-.|+++.. .+|||+|++-.|++
T Consensus 35 v~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 35 VERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred HHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 45577899999999765442111 11112345555666677789999877766667776533 47999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~e 313 (349)
+.. .++++.++++.+.+.
T Consensus 115 ~~~---~~~~l~~yf~~va~a 132 (309)
T cd00952 115 LPL---DVDTAVQFYRDVAEA 132 (309)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 345665555555443
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.17 Score=48.32 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCeEEecCCCCCCHHHH------HhhCCCceEEEEee-------cCChhHHHHHHHHHHHcCCCEEEEecC
Q 018919 92 ATARAASAAGTIMTLSSWSTSSVEEV------ASTGPGIRFFQLYV-------YKDRNVVAQLVRRAERAGFKAIALTVD 158 (349)
Q Consensus 92 ~la~aa~~~G~~~~~~~~~~~~~e~i------~~~~~~~~~~Ql~~-------~~~~~~~~~~~~~~~~~G~~~i~i~~d 158 (349)
.+.......++...-.|....+-+|- ++...+..|+.|=. ..|...+.+..+.+.+.|+..+.+..|
T Consensus 127 ~~~~~~~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~ 206 (326)
T PRK11840 127 MLTDYIDPKKYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSD 206 (326)
T ss_pred hHHHhhhhcCCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34445555555443334333444432 11112445666532 123344445555555558888777777
Q ss_pred CCCCCchhHHhhhhcCCC--CcCcccccCCCCCCchHHHHHHHHHhcCCcEEEE-EecCHHHHHHHHHcCCCEEEEe
Q 018919 159 TPRLGRREADIKNRFTLP--PFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p--~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.|..+.+..++.-..-+| .-++ ...+..+ .+.|+.+++..++||++- ++.+++|+..+.+.|+|++-+.
T Consensus 207 d~~~a~~l~~~g~~avmPl~~pIG--sg~gv~~---p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 207 DPIAAKRLEDAGAVAVMPLGAPIG--SGLGIQN---PYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred CHHHHHHHHhcCCEEEeecccccc--CCCCCCC---HHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 776666655542211112 1111 1111223 356777777788998875 3689999999999999999773
|
|
| >PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=95.57 E-value=1.8 Score=39.54 Aligned_cols=123 Identities=21% Similarity=0.257 Sum_probs=81.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-h-HHHHHHHHHhcCCcEEEEEecCHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-M-DEDVKWLQTITKLPILVKGVLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~-~~~i~~i~~~~~~pv~vK~v~~~~ 216 (349)
.+.+..++.+|+++|.+|+-- |.. . .+++..+++..+.|+-+-+..+.|
T Consensus 25 v~aA~~a~~aGAdgITvHlRe-----------------------------DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e 75 (239)
T PF03740_consen 25 VEAARIAEEAGADGITVHLRE-----------------------------DRRHIQDRDVRRLRELVKTPLNLEMAPTEE 75 (239)
T ss_dssp HHHHHHHHHTT-SEEEEEB-T-----------------------------T-SSS-HHHHHHHHHH-SSEEEEEEESSHH
T ss_pred HHHHHHHHHcCCCEEEeccCC-----------------------------CcCcCCHHHHHHHHHHcccCEEeccCCCHH
Confidence 467778899999999998732 222 2 467999999889999888889999
Q ss_pred HHHHHHHcCCCEEEEecCCCCC--CCCc---hhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 217 DARIAVQAGAAGIIVSNHGARQ--LDYV---PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~--~~~~---~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
....+.+.-.|.+++-.-..-+ -++| ....+.|.++.+.++ -++.++.+-. .+++..|..+|||.|=+-
T Consensus 76 ~~~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~---~~qi~~A~~~Gad~VELh 152 (239)
T PF03740_consen 76 MVDIALKVKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPD---PEQIEAAKELGADRVELH 152 (239)
T ss_dssp HHHHHHHH--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S----HHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHhCCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCC---HHHHHHHHHcCCCEEEEe
Confidence 9999999999999986321111 1111 112345555554442 2577888875 788888999999999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
+--+.
T Consensus 153 TG~yA 157 (239)
T PF03740_consen 153 TGPYA 157 (239)
T ss_dssp THHHH
T ss_pred hhHhh
Confidence 96654
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D .... |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.1 Score=49.66 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=60.0
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH----HHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka----l~~GA~~V~ig~~~l 292 (349)
++.+.+.|+|+|.+.++.|-...-.. --.+.+..+++.+.+++|||+.-|- +-.+.++. -.+|||+|++-.|++
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 45677899999999665442111111 1235566666777778999987774 66666643 347999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~e 313 (349)
+. ..++++.+++..+.+.
T Consensus 113 ~~---~~~~~i~~~f~~va~~ 130 (303)
T PRK03620 113 TE---APQEGLAAHVEAVCKS 130 (303)
T ss_pred CC---CCHHHHHHHHHHHHHh
Confidence 63 2356666666665554
|
|
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.15 Score=47.56 Aligned_cols=86 Identities=28% Similarity=0.322 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCcEEEE---EecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHH--hcCCCcEEEecCC
Q 018919 194 EDVKWLQTITKLPILVK---GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGGV 268 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK---~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~--~~~~ipvia~GGI 268 (349)
+.++++|+.. |...| .+.+.+++++|+++|+|.|.+.|- +.+.+.++.+. ..+++-+=++|||
T Consensus 176 ~Av~~aR~~~--~~~~kIEVEvesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGgI 243 (280)
T COG0157 176 EAVRRARAAA--PFTKKIEVEVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGGI 243 (280)
T ss_pred HHHHHHHHhC--CCCceEEEEcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCCC
Confidence 3477877764 33223 368999999999999999999874 23555566655 4457888899998
Q ss_pred CCHHHHHHHHHhCCCEEEEchHHH
Q 018919 269 RRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
. .+.+..+...|.|.+.+|.+..
T Consensus 244 t-~~ni~~yA~tGVD~IS~galth 266 (280)
T COG0157 244 T-LENIREYAETGVDVISVGALTH 266 (280)
T ss_pred C-HHHHHHHhhcCCCEEEeCcccc
Confidence 6 4888888889999999997653
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.8 Score=41.77 Aligned_cols=233 Identities=15% Similarity=0.121 Sum_probs=118.4
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCCCCCCHHHHHhhC-CC-ceEE----------EEee--cCChhH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTSSVEEVASTG-PG-IRFF----------QLYV--YKDRNV 137 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~~~~~~e~i~~~~-~~-~~~~----------Ql~~--~~~~~~ 137 (349)
|++||=+|..--.+-+.-..|.++|+++|+..+ +-+ ...+++.... +. .++. .+|. .-+.+.
T Consensus 1 ~~iIAEig~NH~Gdl~~A~~lI~~A~~aGadaVKfQt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 77 (329)
T TIGR03569 1 TFIIAEAGVNHNGSLELAKKLVDAAAEAGADAVKFQT---FKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEED 77 (329)
T ss_pred CEEEEEeCCCccCcHHHHHHHHHHHHHhCCCEEEeee---CCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHH
Confidence 677888765321111222478889999998755 322 2344432211 11 1111 1111 012344
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCH
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTA 215 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~ 215 (349)
...+.+.+++.|...+.--.| .+.-|+-..+.+|- ++... +-..+..|+.+.+ ++.||+++.- .+.
T Consensus 78 ~~~L~~~~~~~Gi~~~stpfd-----~~svd~l~~~~v~~~KIaS~------~~~n~pLL~~~A~-~gkPvilStGmatl 145 (329)
T TIGR03569 78 HRELKEYCESKGIEFLSTPFD-----LESADFLEDLGVPRFKIPSG------EITNAPLLKKIAR-FGKPVILSTGMATL 145 (329)
T ss_pred HHHHHHHHHHhCCcEEEEeCC-----HHHHHHHHhcCCCEEEECcc------cccCHHHHHHHHh-cCCcEEEECCCCCH
Confidence 556667777888887642222 12223333332221 11111 1112677888876 6999999875 456
Q ss_pred HHHHH----HHHcCCC---EEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 216 EDARI----AVQAGAA---GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 216 ~~a~~----a~~~G~d---~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
++... +.+.|.+ .+.+..............+..+..+++.. ++||..++=-..-.=.+.|.++||+ +|=
T Consensus 146 ~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG~SdHt~G~~~~~aAvalGA~--iIE 221 (329)
T TIGR03569 146 EEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVGYSDHTLGIEAPIAAVALGAT--VIE 221 (329)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEEECCCCccHHHHHHHHHcCCC--EEE
Confidence 55433 4457875 44443221111111123466777777666 5899886532222333457789999 556
Q ss_pred hHHHHHHhhcCHHHH----HHHHHHHHHHHHHHHHHcCCC
Q 018919 289 RPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 289 ~~~l~~~~~~G~~gv----~~~l~~l~~el~~~m~~~G~~ 324 (349)
+-|--.-+..|.+.- -+-+..+.++++..-..+|..
T Consensus 222 kH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~ 261 (329)
T TIGR03569 222 KHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDG 261 (329)
T ss_pred eCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 655432233343221 123566777777777777753
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.045 Score=47.74 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=54.9
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHh
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTI 202 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~ 202 (349)
+..-+|=+.--|.......++.+++.+.|++++ + |. + .-+.++++++.
T Consensus 91 gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEi-l------------------Pg-~------------~p~vi~~i~~~ 138 (175)
T PF04309_consen 91 GLLTIQRIFLIDSSALETGIKQIEQSKPDAVEI-L------------------PG-V------------MPKVIKKIREE 138 (175)
T ss_dssp T-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEE-E------------------SC-C------------HHHHHCCCCCC
T ss_pred CCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEE-c------------------hH-H------------HHHHHHHHHHh
Confidence 444444333367777778888889999999987 2 10 0 02568888888
Q ss_pred cCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 203 TKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 203 ~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
++.|++..| +.+.|++..++++||++|..|+
T Consensus 139 ~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 139 TNIPIIAGGLIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp CSS-EEEESS--SHHHHHHHCCTTCEEEEE--
T ss_pred cCCCEEeecccCCHHHHHHHHHcCCEEEEcCC
Confidence 999999988 4789999999999999998875
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.13 Score=48.10 Aligned_cols=92 Identities=21% Similarity=0.387 Sum_probs=60.6
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-...-. ....+.+..+++.+++++||++.-|-.+-.+.++ +-.+|||+|++..|++
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 4567788999999976644221111 1224556666666666899988777767666664 3347999999999988
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. ..++++.+++..+.+
T Consensus 104 ~~---~~~~~~~~~~~~ia~ 120 (281)
T cd00408 104 NK---PSQEGIVAHFKAVAD 120 (281)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 64 245565555555544
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.094 Score=48.34 Aligned_cols=71 Identities=23% Similarity=0.256 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+.|+...+.||++|.|-..+.. + + .+++.+..+++.+ ++||+.-..|-++.++.++..+|||+|.+=-.++
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~~-F-~--Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQSY-F-G--GSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRIL 135 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCCc-C-C--CCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhC
Confidence 6688899999999988543221 1 1 2467777787776 7999999999999999999999999997665444
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.12 Score=48.81 Aligned_cols=91 Identities=20% Similarity=0.310 Sum_probs=59.6
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-...-. ..-.+.+..+++.+.+++|||+.-|- +-.+.++ +-++|||++++-.|++
T Consensus 27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 27 VEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 4567789999999976544211111 12234555666666678999998775 6677665 3348999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. ..++++.++++.+.+
T Consensus 106 ~~---~~~~~i~~~f~~v~~ 122 (289)
T cd00951 106 TE---APQEGLYAHVEAVCK 122 (289)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 53 245666666555544
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.084 Score=53.40 Aligned_cols=229 Identities=16% Similarity=0.204 Sum_probs=131.4
Q ss_pred hhcccccccccccC-CC-CCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l~-~~-~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|.... .. +++|++|.+ ..+++.||+.|||..++ |..||.+.++.|..+++.. ++++++..
T Consensus 12 ltfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~P~vsa~mdtvT------e~~MAi~~A~~GGigvIh~--n~~i~~qa 82 (475)
T TIGR01303 12 LTYNDVFMVPSRSEVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGIVILPQ--DLPIPAVK 82 (475)
T ss_pred CCccceEEccCccCccCCCceeecccc-cCccccceeeccchhhH------HHHHHHHHHHCCCEEEEeC--CCCHHHHH
Confidence 47999999998663 33 488999884 47899999999997654 8899999999999999864 45676654
Q ss_pred hhCC----Cce----EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCC-chhHHhhhhcC-CCC-cCcccccCCC
Q 018919 119 STGP----GIR----FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFT-LPP-FLTLKNFQGL 187 (349)
Q Consensus 119 ~~~~----~~~----~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g-~r~~d~~~~~~-~p~-~~~~~~~~~~ 187 (349)
+... ... .+.+. ......+.++.+.+.+...+.+.-+.-..| ...+|++..-. .+- .+-..... .
T Consensus 83 e~v~~VKv~eim~~~pvtv~---p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~~~~~~V~dIMt~~li-t 158 (475)
T TIGR01303 83 QTVAFVKSRDLVLDTPITLA---PHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGVDRFTQVRDIMSTDLV-T 158 (475)
T ss_pred HHHhhcchhhccccCCeEEC---CCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcCCCCCCHHHHccCCce-E
Confidence 3211 111 11111 112344566666666665554421100001 11233321000 000 00000000 0
Q ss_pred CCCch--HHHHHHHHHh-c-CCcEEE-----------------------------------EEe--cCHHHHHHHHHcCC
Q 018919 188 DLGKM--DEDVKWLQTI-T-KLPILV-----------------------------------KGV--LTAEDARIAVQAGA 226 (349)
Q Consensus 188 ~~~~~--~~~i~~i~~~-~-~~pv~v-----------------------------------K~v--~~~~~a~~a~~~G~ 226 (349)
.+++. .+.++.+.+. . .+||+= +++ ...+-++.+.++|+
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGV 238 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGV 238 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhCC
Confidence 11111 1222222221 0 123321 011 11356788999999
Q ss_pred CEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 227 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 227 d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
|.|++..+-|+. ....+.+.++++.. .++|||+ |-+.|.+++..++.+|||+|-||
T Consensus 239 d~i~~D~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 239 DVLVIDTAHGHQ----VKMISAIKAVRALD-LGVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred CEEEEeCCCCCc----HHHHHHHHHHHHHC-CCCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 999997643432 34567788887765 3699998 66999999999999999999865
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.33 Score=43.86 Aligned_cols=118 Identities=17% Similarity=0.274 Sum_probs=76.3
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~ 211 (349)
+.+.+.+-++.++++|++++++..-.+ |... .+.++++.+.. ++++..--
T Consensus 71 E~~iM~~DI~~~~~lG~~GVV~G~lt~----------------------------dg~iD~~~le~Li~aA~gL~vTFHr 122 (241)
T COG3142 71 ELEIMLEDIRLARELGVQGVVLGALTA----------------------------DGNIDMPRLEKLIEAAGGLGVTFHR 122 (241)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEeeecC----------------------------CCccCHHHHHHHHHHccCCceeeeh
Confidence 345677888999999999998755332 1122 35566666554 66776554
Q ss_pred e----cCHH-HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH-HHhCCCE
Q 018919 212 V----LTAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA-LALGASG 284 (349)
Q Consensus 212 v----~~~~-~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka-l~~GA~~ 284 (349)
. .++. ..+.+.+.|+.-|-. +||. ....-.++.|.++.+..++++.|++.|||+. +.+... ...|+.-
T Consensus 123 AFD~~~d~~~ale~li~~Gv~RILT--sGg~--~sa~eg~~~l~~li~~a~gri~Im~GaGV~~-~N~~~l~~~tg~~e 196 (241)
T COG3142 123 AFDECPDPLEALEQLIELGVERILT--SGGK--ASALEGLDLLKRLIEQAKGRIIIMAGAGVRA-ENIAELVLLTGVTE 196 (241)
T ss_pred hhhhcCCHHHHHHHHHHCCCcEEec--CCCc--CchhhhHHHHHHHHHHhcCCEEEEeCCCCCH-HHHHHHHHhcCchh
Confidence 2 4554 457899999999976 4443 2223345556666666667899999999876 566555 4467643
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=2.5 Score=39.71 Aligned_cols=180 Identities=18% Similarity=0.097 Sum_probs=97.1
Q ss_pred HHHHHHHHHcCCeEEecCCCC------------CCHHHHHhh-------CCCceEEEEe-ecCChhHHHHHHHHHHHcCC
Q 018919 91 YATARAASAAGTIMTLSSWST------------SSVEEVAST-------GPGIRFFQLY-VYKDRNVVAQLVRRAERAGF 150 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~------------~~~e~i~~~-------~~~~~~~Ql~-~~~~~~~~~~~~~~~~~~G~ 150 (349)
..-|+.+++.|.-.+..+... .+++++... ..-|..+-+- +..++.-..+.++.++++|+
T Consensus 28 ~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~ 107 (289)
T COG2513 28 AGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGA 107 (289)
T ss_pred HHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCc
Confidence 367889999998866543311 234444321 1122333321 11235566788889999998
Q ss_pred CEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEec----------CHHHH
Q 018919 151 KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVL----------TAEDA 218 (349)
Q Consensus 151 ~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~----------~~~~a 218 (349)
.++.|- |.-. |++-+-.....+.+.+. .+.|+.+++.. +.++++--.. ..+-+
T Consensus 108 agi~iE-Dq~~--------------pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra 172 (289)
T COG2513 108 AGIHIE-DQVG--------------PKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERA 172 (289)
T ss_pred ceeeee-eccc--------------chhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHH
Confidence 886541 2211 11101111111333333 55666666665 3444432221 12446
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcE--EEecCCCCHHHHHHHHHhCCCEEEEchHHHHHH
Q 018919 219 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 219 ~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv--ia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
+...++|||+|.. -+..+.+.+.+++++++-.+|+ .-.|+ .-.-++.+.-++|.+.|..|-..+++.
T Consensus 173 ~AY~eAGAD~if~---------~al~~~e~i~~f~~av~~pl~~N~t~~g~-tp~~~~~~L~~~Gv~~V~~~~~~~raa 241 (289)
T COG2513 173 QAYVEAGADAIFP---------EALTDLEEIRAFAEAVPVPLPANITEFGK-TPLLTVAELAELGVKRVSYGLTAFRAA 241 (289)
T ss_pred HHHHHcCCcEEcc---------ccCCCHHHHHHHHHhcCCCeeeEeeccCC-CCCcCHHHHHhcCceEEEECcHHHHHH
Confidence 7789999999976 2234577888888887412222 22233 112233344469999999998776653
|
|
| >cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.15 Score=48.61 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=62.4
Q ss_pred HHHHHHHHhcC--CcEEEEEecCHH----HHHHHHHc---CCCEEEEecCCCCCCCCchhhHHHHHHHHHHh---c-CCC
Q 018919 194 EDVKWLQTITK--LPILVKGVLTAE----DARIAVQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRI 260 (349)
Q Consensus 194 ~~i~~i~~~~~--~pv~vK~v~~~~----~a~~a~~~---G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~-~~i 260 (349)
+.++.+++..+ .|+++ .+.+.+ +|..+.++ ++|.|.+.|.+++ .+. ..+.+.++++++ + .++
T Consensus 172 ~A~~~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~--~G~--~~~~~~~~~~~l~~~g~~~~ 246 (302)
T cd01571 172 EAWKAFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR--RGV--FRYLIREVRWALDIRGYKHV 246 (302)
T ss_pred HHHHHHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC--CCC--HHHHHHHHHHHHHhCCCCCe
Confidence 34777777664 46655 444444 56666666 4899999886432 111 223344444443 2 468
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 261 PVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 261 pvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.|+++||| +.+.+.++...|+|.+.+|+...
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~ 277 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAIS 277 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccC
Confidence 89999999 78999888889999999999765
|
Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.13 Score=48.82 Aligned_cols=100 Identities=28% Similarity=0.322 Sum_probs=60.8
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc-CCCCCCc---h-HHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF-QGLDLGK---M-DEDVK 197 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~-~~~~~~~---~-~~~i~ 197 (349)
.+.++.+- .+.+...+.++.++++|+++|.++-... +... +.+.. .|. .... .++..+. . ++.++
T Consensus 158 ~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~--~~~~-~~~~~--~~~---~~~~~gg~sg~~~~~~~l~~v~ 227 (300)
T TIGR01037 158 VPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLR--GMKI-DIKTG--KPI---LANKTGGLSGPAIKPIALRMVY 227 (300)
T ss_pred CCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCC--cccc-ccccC--cee---eCCCCccccchhhhHHHHHHHH
Confidence 45566653 2445567888899999999998752211 1100 00000 000 0000 0111111 2 46788
Q ss_pred HHHHhcCCcEE-EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 198 WLQTITKLPIL-VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 198 ~i~~~~~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++++..++||+ ..++.++++|.+++++|||+|.+.
T Consensus 228 ~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 228 DVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred HHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 89988899987 456789999999999999999883
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.7 Score=42.49 Aligned_cols=88 Identities=11% Similarity=0.107 Sum_probs=55.5
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEE--E
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILV--K 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v--K 210 (349)
.+.+.+.+.++.+++. ++++++++.||.+-..-..++.... +. ....+++.++++|+.+++|+++ |
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~-------~a----~~~g~~~~v~~vr~~~~~Pl~lM~y 82 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHR-------KV----KGLDIWPLLEEVRKDVSVPIILMTY 82 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHH-------HH----HHcCcHHHHHHHhccCCCCEEEEEe
Confidence 4667788889888888 9999999988653100000000000 00 0000136899999888999853 3
Q ss_pred E---ecCHHH-HHHHHHcCCCEEEEe
Q 018919 211 G---VLTAED-ARIAVQAGAAGIIVS 232 (349)
Q Consensus 211 ~---v~~~~~-a~~a~~~G~d~I~v~ 232 (349)
. +.+++. ++.+.++|+|+|++.
T Consensus 83 ~n~~~~~~~~~i~~~~~~Gadgvii~ 108 (244)
T PRK13125 83 LEDYVDSLDNFLNMARDVGADGVLFP 108 (244)
T ss_pred cchhhhCHHHHHHHHHHcCCCEEEEC
Confidence 2 234544 888999999999994
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.2 Score=46.59 Aligned_cols=40 Identities=38% Similarity=0.499 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++.+|+.+++||.+.. +.++++++.+. .|+|+++|..
T Consensus 187 ~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS 227 (259)
T PF00290_consen 187 KEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGS 227 (259)
T ss_dssp HHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred HHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence 4679999999999999975 68999999998 9999999953
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=95.24 E-value=3.2 Score=40.25 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=77.2
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCch----hhHHHHHHHHHHhcCCCcEEEecCCCCH-------------
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 271 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~------------- 271 (349)
.+|++|+.-. +.|+|.+-++. ||-......| -.++.|.+|.+.+ .++|++.=||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v-~~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARL-PDTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccC-CCCCEEEeCCCCCchHhhHHHHhhccc
Confidence 4678887755 58999998874 5543211012 3578899998877 25999998886655
Q ss_pred ---------HHHHHHHHhCCCEEEEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 018919 272 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 325 (349)
Q Consensus 272 ---------~dv~kal~~GA~~V~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~~ 325 (349)
+++.+|+.+|..-|=++|-+..+... .. ..-.....+.+++..+..|..+|...
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ 325 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAG 325 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999976543211 11 12234445667777888888888653
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.21 E-value=3.2 Score=40.19 Aligned_cols=112 Identities=14% Similarity=0.229 Sum_probs=76.5
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCch----hhHHHHHHHHHHhcCCCcEEEecCCCC--------------
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRR-------------- 270 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~-------------- 270 (349)
.+|++|+.-. +.|+|.+-++. ||-......| -.++.|.+|++.++ ++|++.=||=..
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~~~~~~~g~~ 251 (347)
T PRK09196 173 TDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELLDIINEYGGD 251 (347)
T ss_pred CCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 4688887765 58999998874 5543211112 35788999988873 588888777544
Q ss_pred --------HHHHHHHHHhCCCEEEEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 018919 271 --------GTDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 325 (349)
Q Consensus 271 --------~~dv~kal~~GA~~V~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~~ 325 (349)
.+++.|++.+|..-|=++|.+..+... .. ..-.....+.+++.++..|..+|..+
T Consensus 252 ~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ 327 (347)
T PRK09196 252 MPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 377899999999999999977554321 00 12233445667778888888888653
|
|
| >PRK05269 transaldolase B; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.8 Score=41.45 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC-------------CchhhHHHHHHHHHHhc---
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKATQ--- 257 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~-------------~~~~~~~~l~~i~~~~~--- 257 (349)
+.++.+.+. ++++-+-.+.+.+.+..|.++|++.|... =||-.+ .+.+.+..+.++.+..+
T Consensus 141 ~A~~~L~~~-GI~vn~TlvFs~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~ 217 (318)
T PRK05269 141 RAAEQLEKE-GINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHG 217 (318)
T ss_pred HHHHHHHHc-CCceeEeEecCHHHHHHHHHcCCCEEEee--ccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcC
Confidence 445666554 89998888999999999999999988764 122111 13345556666665542
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.+..|++. .+|+..++.+ ..|+|.|-|.-.++..+.
T Consensus 218 ~~t~im~A-Sfrn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 218 YKTVVMGA-SFRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred CCceEEee-ccCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 24556664 6999999986 679999999988887765
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.31 Score=47.26 Aligned_cols=122 Identities=17% Similarity=0.161 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK 210 (349)
+++...+.++++.+.|++.+-+.++..... . ...+. .+.++.+|+.. +.++.+.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-~----------------------~~~~~d~~~v~~ir~~~g~~~~l~vD 195 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSG-G----------------------EDLREDLARVRAVREAVGPDVDLMVD 195 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-h----------------------HHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 466677788888889999999887542100 0 00122 56789999887 4677775
Q ss_pred Ee--cCHHHHHH----HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CC
Q 018919 211 GV--LTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-AS 283 (349)
Q Consensus 211 ~v--~~~~~a~~----a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~ 283 (349)
.- .+.++|.. +.+.|++.|-= ...+..++.+.++++.. ++||+++..+.+..|+.+++..| +|
T Consensus 196 aN~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~ipi~~dE~~~~~~~~~~~i~~~~~d 265 (357)
T cd03316 196 ANGRWDLAEAIRLARALEEYDLFWFEE--------PVPPDDLEGLARLRQAT--SVPIAAGENLYTRWEFRDLLEAGAVD 265 (357)
T ss_pred CCCCCCHHHHHHHHHHhCccCCCeEcC--------CCCccCHHHHHHHHHhC--CCCEEeccccccHHHHHHHHHhCCCC
Confidence 42 35566544 33445544310 01122466777777765 79999999999999999999865 78
Q ss_pred EEEEc
Q 018919 284 GIFIG 288 (349)
Q Consensus 284 ~V~ig 288 (349)
.|++-
T Consensus 266 ~v~~k 270 (357)
T cd03316 266 IIQPD 270 (357)
T ss_pred EEecC
Confidence 88764
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.18 Score=47.96 Aligned_cols=93 Identities=25% Similarity=0.394 Sum_probs=59.1
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++-++.|-...-. .-..+.+..+++.+++++|||+.-|=.+-+++++ |-.+|||++++-.|++
T Consensus 31 v~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY 110 (299)
T COG0329 31 VEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYY 110 (299)
T ss_pred HHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 4567889999999976544211111 1123455666667777899998666665566553 3448999999999998
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~e 313 (349)
+.. .++++.+.+..+.+.
T Consensus 111 ~k~---~~~gl~~hf~~ia~a 128 (299)
T COG0329 111 NKP---SQEGLYAHFKAIAEA 128 (299)
T ss_pred cCC---ChHHHHHHHHHHHHh
Confidence 742 345554444444433
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.89 Score=42.20 Aligned_cols=139 Identities=26% Similarity=0.321 Sum_probs=0.0
Q ss_pred eecccccccccCChhhHHHHHHHHHcCCeEEecCCC------------CCCHHH-------HHhhCCCc-eEEEE----e
Q 018919 75 MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS------------TSSVEE-------VASTGPGI-RFFQL----Y 130 (349)
Q Consensus 75 ~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~------------~~~~e~-------i~~~~~~~-~~~Ql----~ 130 (349)
++.|..+ +...|+.+.++|+..+++..+ ..++++ +.+..+.+ ...-+ |
T Consensus 14 l~~~~ay--------D~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y 85 (254)
T cd06557 14 IVMLTAY--------DYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSY 85 (254)
T ss_pred EEEEeCC--------CHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcc
Q ss_pred ecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEE
Q 018919 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILV 209 (349)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~v 209 (349)
.....+......+.++++|+.++-| -|... .+.|+.+++. ++||+.
T Consensus 86 ~~~~~~av~~a~r~~~~aGa~aVki--------------------------------Ed~~~~~~~I~al~~a-gipV~g 132 (254)
T cd06557 86 QTSPEQALRNAARLMKEAGADAVKL--------------------------------EGGAEVAETIRALVDA-GIPVMG 132 (254)
T ss_pred cCCHHHHHHHHHHHHHHhCCeEEEE--------------------------------cCcHHHHHHHHHHHHc-CCCeec
Q ss_pred EEecCH-----------------------HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 210 KGVLTA-----------------------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 210 K~v~~~-----------------------~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
-.-.++ ++++...++|||.|.+ -++++ +...++.+.+ ++|+|+-|
T Consensus 133 HiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~l---------E~v~~-~~~~~i~~~v--~iP~igiG 200 (254)
T cd06557 133 HIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVL---------ECVPA-ELAKEITEAL--SIPTIGIG 200 (254)
T ss_pred cccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEE---------cCCCH-HHHHHHHHhC--CCCEEEec
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.2 Score=40.85 Aligned_cols=154 Identities=15% Similarity=0.179 Sum_probs=85.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~v 212 (349)
+.+...+.++.+.++|++.|+++...+... .|. -.+.++.++.+++.. +.++.+ .+
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~-----------~p~-----------~~~~~~~i~~l~~~~~~~~~~~-l~ 73 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKA-----------VPQ-----------MEDDWEVLRAIRKLVPNVKLQA-LV 73 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccc-----------ccc-----------CCCHHHHHHHHHhccCCcEEEE-Ec
Confidence 556677888999999999999765443110 010 122277889988875 455543 33
Q ss_pred cC-HHHHHHHHHcCCCEEEEecCCCC-----CCCCch-hhHHHHHHHHHHhc-CCCcEEEec-CC----CCHHHHH----
Q 018919 213 LT-AEDARIAVQAGAAGIIVSNHGAR-----QLDYVP-ATIMALEEVVKATQ-GRIPVFLDG-GV----RRGTDVF---- 275 (349)
Q Consensus 213 ~~-~~~a~~a~~~G~d~I~v~~~gg~-----~~~~~~-~~~~~l~~i~~~~~-~~ipvia~G-GI----~~~~dv~---- 275 (349)
.+ .++++.+.++|++.|.++..+-. .+..+. ..++.+.+..+..+ ..+++..+- .+ .+.+++.
T Consensus 74 ~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~ 153 (265)
T cd03174 74 RNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAK 153 (265)
T ss_pred cCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHH
Confidence 34 88999999999999998754320 001111 12222222222221 134444333 23 3444433
Q ss_pred HHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 276 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
++.++|++.+.+.-..- ..-++.+.++++.+++.+
T Consensus 154 ~~~~~g~~~i~l~Dt~G----~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 154 ALEEAGADEISLKDTVG----LATPEEVAELVKALREAL 188 (265)
T ss_pred HHHHcCCCEEEechhcC----CcCHHHHHHHHHHHHHhC
Confidence 34558999998875421 112455555555555543
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >TIGR00874 talAB transaldolase | Back alignment and domain information |
|---|
Probab=95.11 E-value=2.3 Score=40.72 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC-------------CchhhHHHHHHHHHHhc---
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKATQ--- 257 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~-------------~~~~~~~~l~~i~~~~~--- 257 (349)
+.++.+.+. ++++-+-.+.+.+.+..|.++|++.|...- ||-.| ...+....+.++.+..+
T Consensus 139 ~A~~~L~~~-GI~vN~TliFS~~Qa~aaa~AGa~~ISPFV--gRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g 215 (317)
T TIGR00874 139 RAAEELEKE-GIHCNLTLLFSFVQAIACAEAKVTLISPFV--GRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHG 215 (317)
T ss_pred HHHHHHHHC-CCceeeeeecCHHHHHHHHHcCCCEEEeec--chHhHhhhhccCccccccccCchHHHHHHHHHHHHHcC
Confidence 445666554 899988889999999999999999887641 22111 11334556666665542
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
.+. .|....+|+..++.+ .+|||.+-|.-.++..+..
T Consensus 216 ~~T-~Im~ASfRn~~qv~~--laG~d~~Ti~p~ll~~L~~ 252 (317)
T TIGR00874 216 YPT-EVMGASFRNKEEILA--LAGCDRLTISPALLDELKE 252 (317)
T ss_pred CCc-EEEeeccCCHHHHHH--HHCCCeEeCCHHHHHHHHh
Confidence 234 444566999999986 5799999999888876643
|
This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.15 Score=49.06 Aligned_cols=99 Identities=24% Similarity=0.254 Sum_probs=63.3
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc-cCCCCCC---ch-HHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN-FQGLDLG---KM-DEDVK 197 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~-~~~~~~~---~~-~~~i~ 197 (349)
.+.++.+-...+.+...+.++.++++|+++|.++-..... .. ..-|. ... ..++..+ .. ++.++
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~--~~------~~~~~---~~~~~gG~sG~~~~~~~l~~v~ 271 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISR--PG------LLRSP---LANETGGLSGAPLKERSTEVLR 271 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccc--cc------ccccc---ccCCCCccCChhhhHHHHHHHH
Confidence 4677877543344466788899999999999875432110 00 00000 000 0011111 12 78899
Q ss_pred HHHHhc--CCcEE-EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 198 WLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 198 ~i~~~~--~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++++.. ++||+ +.++.+.+++.+.+.+|||.|.+.
T Consensus 272 ~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 272 ELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred HHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 999988 78976 566889999999999999999884
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.8 Score=39.84 Aligned_cols=134 Identities=22% Similarity=0.284 Sum_probs=80.9
Q ss_pred hHHHHHHHHHcCCeEEecCCC------------CCCHHHHHh-------hCC-CceEEEE-ee-cCChhHHHHHHHHHHH
Q 018919 90 EYATARAASAAGTIMTLSSWS------------TSSVEEVAS-------TGP-GIRFFQL-YV-YKDRNVVAQLVRRAER 147 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~-------~~~-~~~~~Ql-~~-~~~~~~~~~~~~~~~~ 147 (349)
+...|+.+.++|+..+..+.+ ..+++|+.. ..+ .+...-+ ++ ..+++...+.++++.+
T Consensus 21 D~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~ 100 (240)
T cd06556 21 DYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMR 100 (240)
T ss_pred CHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHH
Confidence 457999999999887753321 134555432 222 1333322 11 1244566677888888
Q ss_pred cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecC-------------
Q 018919 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLT------------- 214 (349)
Q Consensus 148 ~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~------------- 214 (349)
+|+.++-|- |. .+..+.|+.+++. .+||+...=.+
T Consensus 101 aGa~gv~iE-D~------------------------------~~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~ 148 (240)
T cd06556 101 AGAAGVKIE-GG------------------------------EWHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQ 148 (240)
T ss_pred cCCcEEEEc-Cc------------------------------HHHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceee
Confidence 888876541 11 0113456666654 57776554221
Q ss_pred ----------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecC
Q 018919 215 ----------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 267 (349)
Q Consensus 215 ----------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 267 (349)
.+.++...++|||.|.+- ++ +.+.+.++.+.+ ++|+++.|.
T Consensus 149 ~~~~~~~~~ai~Ra~ay~~AGAd~i~~e---------~~-~~e~~~~i~~~~--~~P~~~~ga 199 (240)
T cd06556 149 YRGDEAGEQLIADALAYAPAGADLIVME---------CV-PVELAKQITEAL--AIPLAGIGA 199 (240)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCEEEEc---------CC-CHHHHHHHHHhC--CCCEEEEec
Confidence 244777889999999983 22 567778888877 789987653
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=3 Score=38.97 Aligned_cols=97 Identities=23% Similarity=0.299 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCcEEEEEec--CHHHH----HHHHHcCCCEEEEecCCCCCCCC-ch--hhHHHHHHHHHHhcCCCcEE
Q 018919 193 DEDVKWLQTITKLPILVKGVL--TAEDA----RIAVQAGAAGIIVSNHGARQLDY-VP--ATIMALEEVVKATQGRIPVF 263 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~--~~~~a----~~a~~~G~d~I~v~~~gg~~~~~-~~--~~~~~l~~i~~~~~~~ipvi 263 (349)
.+.++++. .++.||++|.-. +.++. +.+...|-.-+.+--.|++.... .. ..+..+..+++.. ..||+
T Consensus 124 ~~LL~~~a-~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV~ 200 (266)
T PRK13398 124 FELLKEVG-KTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPII 200 (266)
T ss_pred HHHHHHHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCEE
Confidence 45677774 579999999862 56654 34455787666665455543321 11 2345555555544 68999
Q ss_pred EecCCCC------HHHHHHHHHhCCCEEEEchHHH
Q 018919 264 LDGGVRR------GTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 264 a~GGI~~------~~dv~kal~~GA~~V~ig~~~l 292 (349)
.|..=.. ...+..|+++||++++|-+-+-
T Consensus 201 ~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 201 VDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred EeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 9644333 4667788999999999998653
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.2 Score=47.34 Aligned_cols=93 Identities=11% Similarity=0.133 Sum_probs=58.0
Q ss_pred HHHHHHHcC-CCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchH
Q 018919 217 DARIAVQAG-AAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRP 290 (349)
Q Consensus 217 ~a~~a~~~G-~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~ 290 (349)
.++.+.+.| +++|.+.++.|-...-.. ...+.+..+++.+++++||++.=|=.+-.|+++ +-.+|||+|++..|
T Consensus 26 ~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P 105 (290)
T TIGR00683 26 IIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTP 105 (290)
T ss_pred HHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 345678899 999999766442111111 123445556666667899987755445565554 34489999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHH
Q 018919 291 VVYSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 291 ~l~~~~~~G~~gv~~~l~~l~~ 312 (349)
+++.. .++++.++++.+.+
T Consensus 106 ~y~~~---~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 106 FYYKF---SFPEIKHYYDTIIA 124 (290)
T ss_pred cCCCC---CHHHHHHHHHHHHh
Confidence 87642 34555555555543
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.12 Score=52.60 Aligned_cols=234 Identities=17% Similarity=0.224 Sum_probs=129.5
Q ss_pred hhccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|... ...+++|++|.+. +..+..||+.|||...+ +..|+.+.++.|..++++. .+++++..
T Consensus 9 ~t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT------~~ela~ava~~GglG~i~~--~~~~e~~~ 80 (486)
T PRK05567 9 LTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVT------EARMAIAMAREGGIGVIHK--NMSIEEQA 80 (486)
T ss_pred cCccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcC------HHHHHHHHHhCCCCCEecC--CCCHHHHH
Confidence 4699999999865 3456889998875 46778899999998754 6689999999998888863 34555432
Q ss_pred h----hCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCC-CCC-chhHHhhhh----------cC------
Q 018919 119 S----TGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP-RLG-RREADIKNR----------FT------ 174 (349)
Q Consensus 119 ~----~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p-~~g-~r~~d~~~~----------~~------ 174 (349)
+ ... ....-+...-.......+.++.+.+.+...+.|.=+.- ..| ...+|+... +.
T Consensus 81 ~~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~V~dim~~~~~v~ 160 (486)
T PRK05567 81 EEVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQPVSEVMTKERLVT 160 (486)
T ss_pred HHHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCcHHHHcCCCCCEE
Confidence 2 111 11101111111122344566666677776665421100 000 011222110 00
Q ss_pred CCCcCccccc------CC-----CCCC--c----h-HHH-HHHHHHh-----cCCcEEEEEec-----CHHHHHHHHHcC
Q 018919 175 LPPFLTLKNF------QG-----LDLG--K----M-DED-VKWLQTI-----TKLPILVKGVL-----TAEDARIAVQAG 225 (349)
Q Consensus 175 ~p~~~~~~~~------~~-----~~~~--~----~-~~~-i~~i~~~-----~~~pv~vK~v~-----~~~~a~~a~~~G 225 (349)
++...+.... .+ ..|. . . .++ ++.+... ....+.+.... +.+.++.+.++|
T Consensus 161 v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~ag 240 (486)
T PRK05567 161 VPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAG 240 (486)
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhC
Confidence 0000000000 00 0000 0 0 112 2221100 01234444432 247789999999
Q ss_pred CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 226 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 226 ~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+|.|++...-|+. ...++.+.++++.. .++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 241 vdvivvD~a~g~~----~~vl~~i~~i~~~~-p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 241 VDVLVVDTAHGHS----EGVLDRVREIKAKY-PDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred CCEEEEECCCCcc----hhHHHHHHHHHhhC-CCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 9999886422211 22456677776654 2688887 99999999999999999999875
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.8 Score=44.47 Aligned_cols=148 Identities=21% Similarity=0.284 Sum_probs=0.0
Q ss_pred cccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEe
Q 018919 77 APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (349)
Q Consensus 77 Apm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~ 156 (349)
+|-++.++. .++-.-+.+++.+.|++++..-+....++.+.+..+ ++|+-...-..
T Consensus 142 sp~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~d---~lqIga~~~~n-------------------- 197 (352)
T PRK13396 142 SPYAFQGHG-ESALELLAAAREATGLGIITEVMDAADLEKIAEVAD---VIQVGARNMQN-------------------- 197 (352)
T ss_pred CCcccCCch-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhCC---eEEECcccccC--------------------
Q ss_pred cCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe--cCHHH----HHHHHHcCCCEEE
Q 018919 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGII 230 (349)
Q Consensus 157 ~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v--~~~~~----a~~a~~~G~d~I~ 230 (349)
.+.++++.+ ++.||++|.- .+.++ ++...+.|-+-|+
T Consensus 198 ------------------------------------~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~vi 240 (352)
T PRK13396 198 ------------------------------------FSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVI 240 (352)
T ss_pred ------------------------------------HHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEE
Q ss_pred EecCCCCCCCCchh----hHHHHHHHHHHhcCCCcEEEe-----c-CCCCHHHHHHHHHhCCCEEEE
Q 018919 231 VSNHGARQLDYVPA----TIMALEEVVKATQGRIPVFLD-----G-GVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 231 v~~~gg~~~~~~~~----~~~~l~~i~~~~~~~ipvia~-----G-GI~~~~dv~kal~~GA~~V~i 287 (349)
+--.|-|.+..+.+ .+..++.+++.. ++|||+| | -=..+.-...|+++|||+++|
T Consensus 241 L~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliI 305 (352)
T PRK13396 241 LCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMI 305 (352)
T ss_pred EEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEE
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.1 Score=40.00 Aligned_cols=124 Identities=18% Similarity=0.076 Sum_probs=74.8
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEE--E
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPIL--V 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~--v 209 (349)
.|.....+.++++.+.|++.+.+.+--.. + .| +..+ .+.++++++.++.|+- +
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~d~~-----------~-~~------------~~~~~~~~~~~i~~~~~~~~~v~l 68 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVMDGH-----------F-VP------------NLTIGPPVVEAIRKVTKLPLDVHL 68 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCccCC-----------c-CC------------CcCcCHHHHHHHHhcCCCcEEEEe
Confidence 46667788999999999999887531100 0 01 1113 5778888876654542 3
Q ss_pred EEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 210 KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 210 K~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+.-...+....+.++|+|+|.+ |++.. ......+..+++ . ++.+..+=+-.+..+..+.+..++|.+.+++
T Consensus 69 ~v~d~~~~i~~~~~~g~d~v~v--h~~~~----~~~~~~~~~~~~-~--~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~ 139 (220)
T PRK05581 69 MVENPDRYVPDFAKAGADIITF--HVEAS----EHIHRLLQLIKS-A--GIKAGLVLNPATPLEPLEDVLDLLDLVLLMS 139 (220)
T ss_pred eeCCHHHHHHHHHHcCCCEEEE--eeccc----hhHHHHHHHHHH-c--CCEEEEEECCCCCHHHHHHHHhhCCEEEEEE
Confidence 2222334677788999999999 54410 111223333322 2 4444444355677788888887899988875
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.19 Score=47.62 Aligned_cols=92 Identities=18% Similarity=0.312 Sum_probs=58.9
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+|+|.+.++.|-...-.. .-.+.+..+++.+++++||++.=|- +-.++++ +-.+|||++++-.|++
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 45678899999999765442111111 1234455566666678999987663 5556554 3348999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~e 313 (349)
+. ..++++.++++.+.+.
T Consensus 111 ~~---~s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 111 IN---GEQEGLYAHVEAVCES 128 (296)
T ss_pred CC---CCHHHHHHHHHHHHhc
Confidence 63 2356666666555543
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=3.9 Score=39.68 Aligned_cols=112 Identities=14% Similarity=0.252 Sum_probs=76.5
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCch----hhHHHHHHHHHHhcCCCcEEEecCCCCH-------------
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 271 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~------------- 271 (349)
.+|++|+.-. +.|+|.+-++. ||-+.....| -.++.|.+|.+.++ ++|++.=||=..+
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp~~~~~~~~~~g~~ 251 (347)
T PRK13399 173 TDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVPQELQEIINAYGGK 251 (347)
T ss_pred CCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 4688887766 58999998874 5543211012 25788999988872 5999988886655
Q ss_pred ---------HHHHHHHHhCCCEEEEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 018919 272 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 325 (349)
Q Consensus 272 ---------~dv~kal~~GA~~V~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~~ 325 (349)
+++.||+.+|..-|=++|-+..+... .. ..-.....+.+++-++..|..+|..+
T Consensus 252 ~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ 327 (347)
T PRK13399 252 MKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999966543221 00 12233445567777788888888654
|
|
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.3 Score=41.17 Aligned_cols=118 Identities=25% Similarity=0.265 Sum_probs=80.9
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++...+.+++..+.|+..+-+.++. +++. .+.++.+|+.. +.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~G~~~~KiKvg~-----------------------------~~~~d~~~v~~vr~~~g~~~~l~v 134 (265)
T cd03315 84 GEPAEVAEEARRALEAGFRTFKLKVGR-----------------------------DPARDVAVVAALREAVGDDAELRV 134 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC-----------------------------CHHHHHHHHHHHHHhcCCCCEEEE
Confidence 456666777788888899998877642 1112 46788888877 456655
Q ss_pred EEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
..- -+.++| +.+.+.|++.|--- ..+..++.+.++++.. .+||++++.+.+..|+.+++..+ +
T Consensus 135 Dan~~~~~~~a~~~~~~l~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~ipia~dE~~~~~~~~~~~i~~~~~ 204 (265)
T cd03315 135 DANRGWTPKQAIRALRALEDLGLDYVEQP--------LPADDLEGRAALARAT--DTPIMADESAFTPHDAFRELALGAA 204 (265)
T ss_pred eCCCCcCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhhC--CCCEEECCCCCCHHHHHHHHHhCCC
Confidence 432 245554 55666777776321 1122466777777765 79999999999999999999865 7
Q ss_pred CEEEEch
Q 018919 283 SGIFIGR 289 (349)
Q Consensus 283 ~~V~ig~ 289 (349)
|.|++--
T Consensus 205 d~v~~k~ 211 (265)
T cd03315 205 DAVNIKT 211 (265)
T ss_pred CEEEEec
Confidence 8888753
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.6 Score=44.55 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-Cc-eEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHH
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGP-GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~-~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d 168 (349)
....+.+.+.|...+...... +.+-+..... +. .+.++ .+ .+.+++++++|+|.|.++---. |
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~-p~~~i~~lk~~g~~v~~~v---~s----~~~a~~a~~~GaD~Ivv~g~ea--g----- 141 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGN-PGKYIPRLKENGVKVIPVV---AS----VALAKRMEKAGADAVIAEGMES--G----- 141 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCC-cHHHHHHHHHcCCEEEEEc---CC----HHHHHHHHHcCCCEEEEECccc--C-----
Confidence 356677778898876543332 2222222211 22 23332 12 3457888899999998753210 0
Q ss_pred hhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 169 IKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
++. .+...+..++++++.+++||++-+ +.+.+++..+...|+|+|.+..
T Consensus 142 ---Gh~-------------g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 142 ---GHI-------------GELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred ---CCC-------------CCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecch
Confidence 000 011127889999998899987765 7899999999999999999853
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.31 Score=44.62 Aligned_cols=80 Identities=24% Similarity=0.111 Sum_probs=55.2
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHh
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTI 202 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~ 202 (349)
.+.++.+-...+ +.+.++++.++++|+++| |+++-.. + ....|+.|++++
T Consensus 140 ~pVsvKir~g~~-~~~~~la~~l~~aG~d~i--hv~~~~~---------------g----------~~ad~~~I~~i~-- 189 (233)
T cd02911 140 VPVSVKIRAGVD-VDDEELARLIEKAGADII--HVDAMDP---------------G----------NHADLKKIRDIS-- 189 (233)
T ss_pred CCEEEEEcCCcC-cCHHHHHHHHHHhCCCEE--EECcCCC---------------C----------CCCcHHHHHHhc--
Confidence 355665543333 456788889999999975 5543210 0 011177788877
Q ss_pred cCCcEEE-EEecCHHHHHHHHHcCCCEEEEe
Q 018919 203 TKLPILV-KGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 203 ~~~pv~v-K~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.++||+. .++.+.++++.+++.|+|+|.+.
T Consensus 190 ~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 190 TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 6899875 44789999999999999999884
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK12346 transaldolase A; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=2 Score=41.12 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC-------------CchhhHHHHHHHHHHhcC--
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKATQG-- 258 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~-------------~~~~~~~~l~~i~~~~~~-- 258 (349)
+.++.+.+. ++++-+-.+.+.+.+..|.++|++.|... =||-.+ .+.+....+.++.+..+.
T Consensus 140 ~A~~~L~~~-GI~~n~TliFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~ 216 (316)
T PRK12346 140 RAAEELEKE-GINCNLTLLFSFAQARACAEAGVFLISPF--VGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHR 216 (316)
T ss_pred HHHHHHHHC-CCceeEEEecCHHHHHHHHHcCCCEEEec--ccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcC
Confidence 445555543 89998888999999999999999988753 222111 133445566666655421
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 259 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 259 ~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
--+.|....+|+..++. ..+|+|.+-|.-.++..+..
T Consensus 217 ~~T~Vm~ASfRn~~qi~--alaG~d~lTi~p~ll~~L~~ 253 (316)
T PRK12346 217 YETIVMGASFRRTEQIL--ALAGCDRLTISPNLLKELQE 253 (316)
T ss_pred CCcEEEecccCCHHHHH--HHhCCCEEeCCHHHHHHHHh
Confidence 12444455599999997 34799999999888877643
|
|
| >cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.33 Score=45.54 Aligned_cols=94 Identities=20% Similarity=0.203 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCcEEEEE---ecCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHh----cCCCcEEEe
Q 018919 194 EDVKWLQTITKLPILVKG---VLTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLD 265 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~---v~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~----~~~ipvia~ 265 (349)
+.++.+++..+.|...|. ..+.+++..+.++| +|+|.+.+.+..+ ..+....+ +..+++ ..++.++++
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~i~~S 245 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEE---LDPAVLIL-KARAHLDGKGLPRVKIEAS 245 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHH---HHHHHHHH-HHHHhhhhcCCCceEEEEe
Confidence 457777776542344443 25688999999999 9999886542211 11111111 122211 136789999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 266 GGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 266 GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
|||. .+.+.+....|.|.+.+|+.+.
T Consensus 246 ggi~-~~~i~~~~~~gvd~~gvG~~~~ 271 (281)
T cd00516 246 GGLD-EENIRAYAETGVDVFGVGTLLH 271 (281)
T ss_pred CCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 9997 7888888789999999999765
|
QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.47 Score=41.21 Aligned_cols=108 Identities=15% Similarity=0.218 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHH---HhcCCcEEEEEe
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQ---TITKLPILVKGV 212 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~---~~~~~pv~vK~v 212 (349)
...+.++++.+.|++.+.+.+.... ... .+.+++++ +.+++++++.
T Consensus 13 ~~~~~l~~l~~~g~~~i~lr~~~~~----------------------------~~~~~~~~~~i~~~~~~~~~~l~~~-- 62 (196)
T cd00564 13 DLLEVVEAALKGGVTLVQLREKDLS----------------------------ARELLELARALRELCRKYGVPLIIN-- 62 (196)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCCC----------------------------HHHHHHHHHHHHHHHHHhCCeEEEe--
Confidence 3456788888889998876553210 001 23344443 3457777753
Q ss_pred cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 213 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
+..+.+.++|+|++.+... ......+. +.. +........+++.+++.++...|+|.|.++.-
T Consensus 63 ---~~~~~a~~~g~~~vh~~~~--------~~~~~~~~---~~~--~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~ 124 (196)
T cd00564 63 ---DRVDLALAVGADGVHLGQD--------DLPVAEAR---ALL--GPDLIIGVSTHSLEEALRAEELGADYVGFGPV 124 (196)
T ss_pred ---ChHHHHHHcCCCEEecCcc--------cCCHHHHH---HHc--CCCCEEEeeCCCHHHHHHHhhcCCCEEEECCc
Confidence 3466789999998866321 01112222 222 22333444468999999999999999999753
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.27 Score=46.32 Aligned_cols=92 Identities=20% Similarity=0.336 Sum_probs=58.7
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-...-.. .-.+.+..+++.+++++||++.=|-.+-+++++ |-.+|||+|++..|++
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYY 104 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcC
Confidence 45677899999998665442211111 123455556666667899997766666677654 3347999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+.. .++++.++++.+.+
T Consensus 105 ~~~---~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 105 NKP---TQEGLYQHFKAIAE 121 (285)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 632 34555555555444
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.63 Score=44.85 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=60.5
Q ss_pred CceEEEEeec---CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH
Q 018919 123 GIRFFQLYVY---KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL 199 (349)
Q Consensus 123 ~~~~~Ql~~~---~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i 199 (349)
.|..+|--.+ .|.+.+.+.+++++++|++.+-+++.. .+..+.+++|
T Consensus 26 ~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~------------------------------~~~a~al~~I 75 (360)
T PRK00366 26 APIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPD------------------------------MEAAAALPEI 75 (360)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCC------------------------------HHHHHhHHHH
Confidence 3455665332 355667888899999999998766532 1114669999
Q ss_pred HHhcCCcEEEEEecCHHHHHHHHHcCCCEEEE
Q 018919 200 QTITKLPILVKGVLTAEDARIAVQAGAAGIIV 231 (349)
Q Consensus 200 ~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v 231 (349)
++..++|+++=+=.++..|..++++|+|.|-+
T Consensus 76 ~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRI 107 (360)
T PRK00366 76 KKQLPVPLVADIHFDYRLALAAAEAGADALRI 107 (360)
T ss_pred HHcCCCCEEEecCCCHHHHHHHHHhCCCEEEE
Confidence 99999999986668999999999999999987
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.4 Score=45.98 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=60.4
Q ss_pred CceEEEEeecC-C---hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHH
Q 018919 123 GIRFFQLYVYK-D---RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKW 198 (349)
Q Consensus 123 ~~~~~Ql~~~~-~---~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~ 198 (349)
.+..+.+-... + .+...+.++.++++|+++|.||-.+.. .+++.-+. .+ ...+..|+.+.+
T Consensus 124 ~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~--------~qg~sg~~---~~----~~~~~~~~~i~~ 188 (318)
T TIGR00742 124 IPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAW--------LSGLSPKE---NR----EIPPLRYERVYQ 188 (318)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchh--------hcCCCccc---cc----cCCchhHHHHHH
Confidence 45556553321 1 145567889999999999998865421 01221000 00 011222888999
Q ss_pred HHHhc-CCcEEEE-EecCHHHHHHHHHcCCCEEEEe
Q 018919 199 LQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 199 i~~~~-~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+++.. ++||+.- ++.++++++.+.+ |||+|.++
T Consensus 189 vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig 223 (318)
T TIGR00742 189 LKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG 223 (318)
T ss_pred HHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 99887 8998654 4789999999886 99999883
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.22 Score=46.97 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=58.6
Q ss_pred HHHHHHc-CCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHH
Q 018919 218 ARIAVQA-GAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 291 (349)
Q Consensus 218 a~~a~~~-G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~ 291 (349)
++.+.+. |+++|.+.++.|-... +-....+.+..+++.+.+++|||+.=|-.+-.|+++ +-.+|||+|++-.|+
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4567778 9999999776442111 111123455556666667899998554445555553 345899999999998
Q ss_pred HHHHhhcCHHHHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l~~e 313 (349)
++. -.++++.++++.+.+.
T Consensus 107 y~~---~~~~~i~~~~~~v~~a 125 (288)
T cd00954 107 YYK---FSFEEIKDYYREIIAA 125 (288)
T ss_pred CCC---CCHHHHHHHHHHHHHh
Confidence 764 2355666666555543
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.14 Score=50.97 Aligned_cols=106 Identities=22% Similarity=0.213 Sum_probs=62.7
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc-cCCCCCC---ch-HHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN-FQGLDLG---KM-DEDVK 197 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~-~~~~~~~---~~-~~~i~ 197 (349)
.|.++.|-. +...+.+.++.++++|++++.+. ++-. +...-|+...-..| .+..+. ..++-.+ .. |+.|.
T Consensus 169 ~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~p-~~~~~~~~gg~SG~a~~p~~l~~v~ 243 (420)
T PRK08318 169 LPVIVKLTP--NITDIREPARAAKRGGADAVSLI-NTIN-SITGVDLDRMIPMP-IVNGKSSHGGYCGPAVKPIALNMVA 243 (420)
T ss_pred CcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe-cccC-ccccccccccCCCc-eecCCCCcccccchhhhHHHHHHHH
Confidence 567887753 33346788889999999998742 2211 00000000000001 000010 0111111 23 88899
Q ss_pred HHHHhc---CCcEE-EEEecCHHHHHHHHHcCCCEEEEec
Q 018919 198 WLQTIT---KLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 198 ~i~~~~---~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
++++.+ ++||+ +.++.+.+||...+.+|||+|.+..
T Consensus 244 ~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~t 283 (420)
T PRK08318 244 EIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCT 283 (420)
T ss_pred HHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeee
Confidence 999887 78976 6668999999999999999999853
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.18 Score=47.88 Aligned_cols=101 Identities=25% Similarity=0.228 Sum_probs=61.0
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHc--CCCEEEEecCCCCCC-----chhHHhhhhcCCCCcCcccccCCCCCCch---
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLG-----RREADIKNRFTLPPFLTLKNFQGLDLGKM--- 192 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~--G~~~i~i~~d~p~~g-----~r~~d~~~~~~~p~~~~~~~~~~~~~~~~--- 192 (349)
.|.++.|-...+.+.+.+.++.+.+. |++++.+. ++-..+ .|.+- ..+.+ ....++-.+..
T Consensus 158 iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~-Nt~~~~~~id~~~~~~-----~~~~~---~~~gG~SG~~i~~~ 228 (294)
T cd04741 158 IPVGVKTPPYTDPAQFDTLAEALNAFACPISFITAT-NTLGNGLVLDPERETV-----VLKPK---TGFGGLAGAYLHPL 228 (294)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE-ccCCccccccCCCCCc-----ccCCC---CCCCCcCchhhHHH
Confidence 57888886655555667788888888 89988742 221000 01000 00000 00111111111
Q ss_pred -HHHHHHHHHhcC--CcEE-EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 193 -DEDVKWLQTITK--LPIL-VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 -~~~i~~i~~~~~--~pv~-vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.++++++..+ +||+ +.++.+.+|+.+.+.+|||+|.+.
T Consensus 229 al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ 272 (294)
T cd04741 229 ALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVG 272 (294)
T ss_pred HHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEc
Confidence 466788888884 8975 455899999999999999999984
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.4 Score=40.32 Aligned_cols=123 Identities=18% Similarity=0.196 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-h-HHHHHHHHHhcCCcEEEEEecCHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-M-DEDVKWLQTITKLPILVKGVLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~-~~~i~~i~~~~~~pv~vK~v~~~~ 216 (349)
.+.+..++++|++.|.+|+-- |.. . .+++..+++..+.|+-+-+..+.|
T Consensus 27 v~aA~~a~~aGAdgITvHlRe-----------------------------DrRHI~d~Dv~~L~~~~~~~lNlE~a~~~e 77 (239)
T PRK05265 27 VRAALIAEQAGADGITVHLRE-----------------------------DRRHIRDRDVRLLRETLKTELNLEMAATEE 77 (239)
T ss_pred HHHHHHHHHcCCCEEEecCCC-----------------------------CcccCCHHHHHHHHHhcCCCEEeccCCCHH
Confidence 467778899999999988732 222 2 467999998888898888888999
Q ss_pred HHHHHHHcCCCEEEEecCCCCC--CCCc---hhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 217 DARIAVQAGAAGIIVSNHGARQ--LDYV---PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~--~~~~---~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
....+.+.-.+.+++-.-..-+ -++| ....+.|..+.+.++ -++.++.+ -+.+++..+..+|||.|=+-
T Consensus 78 m~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid---P~~~qi~~A~~~GAd~VELh 154 (239)
T PRK05265 78 MLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID---PDPEQIEAAAEVGADRIELH 154 (239)
T ss_pred HHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHhCcCEEEEe
Confidence 9999999999999986421111 1122 123455555555543 25778887 56889989999999999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
+--+.
T Consensus 155 TG~yA 159 (239)
T PRK05265 155 TGPYA 159 (239)
T ss_pred chhhh
Confidence 86553
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.8 Score=39.30 Aligned_cols=126 Identities=14% Similarity=0.069 Sum_probs=73.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v 212 (349)
|.....+.++++.+.|++.+.+.+--. .| .| +-.+ .+.++++++.++.|+-+...
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld~~d~-----------~f-~~------------~~~~g~~~~~~l~~~~~~~~~vhlm 73 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVDVMDG-----------HF-VP------------NLTIGPPVVKALRKHTDAPLDCHLM 73 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccC-----------Cc-CC------------ccccCHHHHHHHHhcCCCcEEEEec
Confidence 444566788899999999887644210 01 01 1112 37788888877777655554
Q ss_pred -cCH-HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC--CCEEEEc
Q 018919 213 -LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGIFIG 288 (349)
Q Consensus 213 -~~~-~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G--A~~V~ig 288 (349)
.++ +....+.++|+|+|++ |.+. +........+..+++. ++-+-.+-.-.|+.+.++.+..+ +|.|++|
T Consensus 74 v~~p~d~~~~~~~~gad~v~v--H~~q--~~~d~~~~~~~~i~~~---g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~ 146 (229)
T PLN02334 74 VTNPEDYVPDFAKAGASIFTF--HIEQ--ASTIHLHRLIQQIKSA---GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVM 146 (229)
T ss_pred cCCHHHHHHHHHHcCCCEEEE--eecc--ccchhHHHHHHHHHHC---CCeEEEEECCCCCHHHHHHHHhccCCCEEEEE
Confidence 344 4577889999999988 5441 0011123444444332 33233332223667777666544 9999998
Q ss_pred hH
Q 018919 289 RP 290 (349)
Q Consensus 289 ~~ 290 (349)
+-
T Consensus 147 ~v 148 (229)
T PLN02334 147 SV 148 (229)
T ss_pred EE
Confidence 63
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.44 Score=41.95 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch---HHHHHHHHHhcCCcEEEEEecC
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM---DEDVKWLQTITKLPILVKGVLT 214 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~---~~~i~~i~~~~~~pv~vK~v~~ 214 (349)
..+.++++.+.|++.+.+..... .+.++ ...+..+.+.++.|+++.
T Consensus 15 ~~~~~~~~~~~g~~~v~lR~~~~---------------------------~~~~~~~~~~~l~~~~~~~~~~l~i~---- 63 (196)
T TIGR00693 15 LLNRVEAALKGGVTLVQLRDKGS---------------------------NTRERLALAEKLQELCRRYGVPFIVN---- 63 (196)
T ss_pred HHHHHHHHHhcCCCEEEEecCCC---------------------------CHHHHHHHHHHHHHHHHHhCCeEEEE----
Confidence 44567777888999887643210 01111 234556666678898874
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
++.+.+.+.|+|+|.+... . . .. ..+++.++.. .+....+++.+++.++..+|||.|.+|.-|
T Consensus 64 -~~~~la~~~g~~GvHl~~~---~----~-~~---~~~r~~~~~~--~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~ 126 (196)
T TIGR00693 64 -DRVDLALALGADGVHLGQD---D----L-PA---SEARALLGPD--KIIGVSTHNLEELAEAEAEGADYIGFGPIF 126 (196)
T ss_pred -CHHHHHHHcCCCEEecCcc---c----C-CH---HHHHHhcCCC--CEEEEeCCCHHHHHHHhHcCCCEEEECCcc
Confidence 3567888999999987421 0 0 11 1222333212 344566999999999999999999998644
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.4 Score=41.09 Aligned_cols=139 Identities=22% Similarity=0.234 Sum_probs=0.0
Q ss_pred eecccccccccCChhhHHHHHHHHHcCCeEEecCCC------------CCCHHHHHhhCC------CceEEEEeec----
Q 018919 75 MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS------------TSSVEEVASTGP------GIRFFQLYVY---- 132 (349)
Q Consensus 75 ~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~~~~------~~~~~Ql~~~---- 132 (349)
++.|.++ +...|+.+.++|+..++...+ ..+++++..... ...++-.-.+
T Consensus 17 i~~~tay--------D~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y 88 (264)
T PRK00311 17 IVMLTAY--------DYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSY 88 (264)
T ss_pred EEEEeCC--------CHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCc
Q ss_pred -CChhHHHHHHHHHHH-cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEE-
Q 018919 133 -KDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPIL- 208 (349)
Q Consensus 133 -~~~~~~~~~~~~~~~-~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~- 208 (349)
.+++...+.+.++.+ +|++++-| -+... .+.|+.+++. ++||+
T Consensus 89 ~~~~~~av~~a~r~~~~aGa~aVki--------------------------------Edg~~~~~~I~al~~a-gIpV~g 135 (264)
T PRK00311 89 QASPEQALRNAGRLMKEAGAHAVKL--------------------------------EGGEEVAETIKRLVER-GIPVMG 135 (264)
T ss_pred cCCHHHHHHHHHHHHHHhCCeEEEE--------------------------------cCcHHHHHHHHHHHHC-CCCEee
Q ss_pred --------------EEEe--------cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 209 --------------VKGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 209 --------------vK~v--------~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
.|.. ...++++...++|||.|.+ -+.+. +...++.+.+ ++|+|+-|
T Consensus 136 HiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~l---------E~v~~-~~~~~i~~~l--~iP~igiG 203 (264)
T PRK00311 136 HLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVL---------ECVPA-ELAKEITEAL--SIPTIGIG 203 (264)
T ss_pred eecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEE---------cCCCH-HHHHHHHHhC--CCCEEEec
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.25 Score=46.73 Aligned_cols=92 Identities=16% Similarity=0.259 Sum_probs=59.4
Q ss_pred HHHHHH-cCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHH
Q 018919 218 ARIAVQ-AGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 291 (349)
Q Consensus 218 a~~a~~-~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~ 291 (349)
++.+.+ .|+++|.+.++.|-...-. ....+.+..+++.+++++|||+.=|-.+-.|+++ +-++|||+|++-.|+
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 456778 9999999977644211111 1123455566667777899998776666777754 345899999999998
Q ss_pred HHHHhhcCHHHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l~~ 312 (349)
++.. .++++.++++.+.+
T Consensus 110 y~~~---~~~~l~~~f~~va~ 127 (293)
T PRK04147 110 YYPF---SFEEICDYYREIID 127 (293)
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 7632 23455545444433
|
|
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=94.61 E-value=1 Score=43.41 Aligned_cols=83 Identities=10% Similarity=0.157 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 273 (349)
..+.+.++..+++++. .+.+.+.+..+.+.|++++.+... ....+..|..+.+. +.|||.+-|..+-++
T Consensus 80 ~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KI~S~-------~~~n~~LL~~va~~---gkPvilstG~~t~~E 148 (327)
T TIGR03586 80 KELFERAKELGLTIFS-SPFDETAVDFLESLDVPAYKIASF-------EITDLPLIRYVAKT---GKPIIMSTGIATLEE 148 (327)
T ss_pred HHHHHHHHHhCCcEEE-ccCCHHHHHHHHHcCCCEEEECCc-------cccCHHHHHHHHhc---CCcEEEECCCCCHHH
Confidence 4466667888999875 567888999999999999999532 12235667666653 789999999999999
Q ss_pred HHHHHH----hCCCEEEE
Q 018919 274 VFKALA----LGASGIFI 287 (349)
Q Consensus 274 v~kal~----~GA~~V~i 287 (349)
+..|+. .|..-|.+
T Consensus 149 i~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 149 IQEAVEACREAGCKDLVL 166 (327)
T ss_pred HHHHHHHHHHCCCCcEEE
Confidence 988775 47654555
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.31 Score=45.71 Aligned_cols=93 Identities=19% Similarity=0.348 Sum_probs=58.2
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHH
Q 018919 217 DARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 291 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~ 291 (349)
.++.+.+.|+++|.+.++-|-...-.. ...+.+..+++.+.+++||++.=|-.+..++++ +-.+|||+|++..|+
T Consensus 26 ~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~ 105 (284)
T cd00950 26 LIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPY 105 (284)
T ss_pred HHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 356678899999999765442111111 123445555666666788886655556666665 344899999999998
Q ss_pred HHHHhhcCHHHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l~~ 312 (349)
++. ..++++.++++.+.+
T Consensus 106 ~~~---~~~~~l~~~~~~ia~ 123 (284)
T cd00950 106 YNK---PSQEGLYAHFKAIAE 123 (284)
T ss_pred cCC---CCHHHHHHHHHHHHh
Confidence 763 234555555555544
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.41 Score=45.43 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=58.8
Q ss_pred HHHHhcCCcEEEEEec--CHH----HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 198 WLQTITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 198 ~i~~~~~~pv~vK~v~--~~~----~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.+++..+.|+++.... +++ .++.+.+.|+|+|.+.-. ....+....++.+.++++.+ ++||++- ++.+.
T Consensus 109 ~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~--~p~~~~~~~~~~i~~l~~~~--~~pvivK-~v~s~ 183 (299)
T cd02809 109 EVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVD--TPVLGRRLTWDDLAWLRSQW--KGPLILK-GILTP 183 (299)
T ss_pred HHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecC--CCCCCCCCCHHHHHHHHHhc--CCCEEEe-ecCCH
Confidence 3334344688777653 333 456677899999998421 10001113467788888776 5898876 58999
Q ss_pred HHHHHHHHhCCCEEEEc
Q 018919 272 TDVFKALALGASGIFIG 288 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig 288 (349)
+++.++..+|||+|.+.
T Consensus 184 ~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 184 EDALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHHHCCCCEEEEc
Confidence 99999999999999884
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=94.51 E-value=4.2 Score=38.12 Aligned_cols=176 Identities=18% Similarity=0.119 Sum_probs=101.2
Q ss_pred eeecccccccccCChhhHHHHHHHHHcCCeEEe-----cCCCCCCHHHHHhhC------CCceEEEEeecCChhHHHHHH
Q 018919 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVASTG------PGIRFFQLYVYKDRNVVAQLV 142 (349)
Q Consensus 74 i~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-----~~~~~~~~e~i~~~~------~~~~~~Ql~~~~~~~~~~~~~ 142 (349)
-++.|+.- +-.+.++-..+++-..+.|+-+++ |++...+.||..+.. .+..++++.. .+.....+++
T Consensus 7 a~~TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg~-~~~~~ai~~a 84 (279)
T cd00953 7 PVITPFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVGS-LNLEESIELA 84 (279)
T ss_pred ceecCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeCc-CCHHHHHHHH
Confidence 34566643 333455556777778888876654 233455666633211 1334556532 4566778899
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-------cC
Q 018919 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-------LT 214 (349)
Q Consensus 143 ~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-------~~ 214 (349)
+.+++.|++++.+.. |.. ..+ .+++- .+..+.+.+ ++|+++=.. .+
T Consensus 85 ~~a~~~Gad~v~v~~--P~y-----------~~~-----------~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~ 138 (279)
T cd00953 85 RAAKSFGIYAIASLP--PYY-----------FPG-----------IPEEWLIKYFTDISS--PYPTFIYNYPKATGYDIN 138 (279)
T ss_pred HHHHHcCCCEEEEeC--CcC-----------CCC-----------CCHHHHHHHHHHHHh--cCCEEEEeCccccCCCCC
Confidence 999999999998643 210 000 01111 345666666 789887553 46
Q ss_pred HHHHHHHHHc--CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 215 AEDARIAVQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 215 ~~~a~~a~~~--G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
++..+++.+. .+-+|.-++ ..+..+.++.+.. +++.|+ +| ..+.+..++.+||++.+.|...+
T Consensus 139 ~~~l~~L~~~~p~vvgiK~s~----------~d~~~~~~~~~~~-~~~~v~-~G---~d~~~~~~l~~Ga~G~i~~~~n~ 203 (279)
T cd00953 139 ARMAKEIKKAGGDIIGVKDTN----------EDISHMLEYKRLV-PDFKVY-SG---PDSLIFSALRSGLDGSVAAASNY 203 (279)
T ss_pred HHHHHHHHhcCCCEEEEEeCc----------cCHHHHHHHHHhC-CCeEEE-Ec---cHHHHHHHHHcCCCeEEechhhc
Confidence 7888888764 344444421 1233344443333 255554 33 23666788899999999998643
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.49 E-value=4.1 Score=37.84 Aligned_cols=183 Identities=22% Similarity=0.307 Sum_probs=99.2
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC--CceEEEEeecCChhHHHHHHHHH-HHcC
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRA-ERAG 149 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~~~-~~~G 149 (349)
-|+..|.+..+ .+--...|+..++.|.-+.-+.- .+| .|+-||=.. .+- ..+++++ .+.|
T Consensus 47 ~viAGPCsvEs---~E~i~~~A~~vk~~Ga~~lRGga----------fKPRTSPYsFQGlg---e~g-L~~l~~a~~~~G 109 (286)
T COG2876 47 RVIAGPCSVES---EEQVRETAESVKAAGAKALRGGA----------FKPRTSPYSFQGLG---EEG-LKLLKRAADETG 109 (286)
T ss_pred EEEecCcccCC---HHHHHHHHHHHHHcchhhccCCc----------CCCCCCcccccccC---HHH-HHHHHHHHHHcC
Confidence 35555665432 23335778888888888654321 123 456677433 222 3344444 4557
Q ss_pred CCEEEEecCCCCCCchhHHhhhh--cCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe--cCHHH----HHHH
Q 018919 150 FKAIALTVDTPRLGRREADIKNR--FTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV--LTAED----ARIA 221 (349)
Q Consensus 150 ~~~i~i~~d~p~~g~r~~d~~~~--~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v--~~~~~----a~~a 221 (349)
-..+.=-+|. +|+... +..--.++.+|. ++ ++.++++-+ .+.||++|-- .|.|+ |+-.
T Consensus 110 l~vvtEvm~~-------~~~e~~~~y~DilqvGARNM---QN---F~LLke~G~-~~kPvLLKRg~~aTieEwL~AAEYI 175 (286)
T COG2876 110 LPVVTEVMDV-------RDVEAAAEYADILQVGARNM---QN---FALLKEVGR-QNKPVLLKRGLSATIEEWLNAAEYI 175 (286)
T ss_pred CeeEEEecCH-------HHHHHHHhhhhHHHhcccch---hh---hHHHHHhcc-cCCCeEEecCccccHHHHHHHHHHH
Confidence 6554211221 111111 100000122221 11 355666543 5899999975 45555 5556
Q ss_pred HHcCCCEEEEecCCCCCCCCc-hh--hHHHHHHHHHHhcCCCcEEEecCCCCHHH------HHHHHHhCCCEEEEc
Q 018919 222 VQAGAAGIIVSNHGARQLDYV-PA--TIMALEEVVKATQGRIPVFLDGGVRRGTD------VFKALALGASGIFIG 288 (349)
Q Consensus 222 ~~~G~d~I~v~~~gg~~~~~~-~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~d------v~kal~~GA~~V~ig 288 (349)
+..|-..|++--.|=|..+.. +- ++.+++.+++.. ..|||+|=-=.+|.. +..|++.|||++|+-
T Consensus 176 ~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 176 LSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred HhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 678988888876676654432 11 356677776654 799999743333322 235778999999986
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.38 Score=46.83 Aligned_cols=42 Identities=26% Similarity=0.499 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 245 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 245 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+|+.|..+++.- ++|||+=| |.+++|+.+++.+|+|+|.|+.
T Consensus 211 tW~dl~wlr~~~--~~PvivKg-V~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 211 SWKDVQWLQTIT--KLPILVKG-VLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred CHHHHHHHHhcc--CCCEEeec-CCCHHHHHHHHhcCCCEEEECC
Confidence 567777777654 78988755 7899999999999999999875
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.23 Score=47.80 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=49.5
Q ss_pred HHHHHHHHcCC--CEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 216 EDARIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 216 ~~a~~a~~~G~--d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+.+..+.++|+ |.|.+...-| ......+.+.++++..+ ++||| .|.|.|.+++..++.+|||++.+|
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~g----h~~~~~e~I~~ir~~~p-~~~vi-~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHG----HSDSVINMIQHIKKHLP-ETFVI-AGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC----chHHHHHHHHHHHhhCC-CCeEE-EEecCCHHHHHHHHHcCcCEEEEC
Confidence 56788899965 9999965322 23445677888877652 35554 456889999999999999999877
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.21 Score=50.98 Aligned_cols=234 Identities=18% Similarity=0.165 Sum_probs=126.4
Q ss_pred hhcccccccccccC---CCCCCCcceeEc--------CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCC
Q 018919 41 NAFSRILFRPRILI---DVSKIDMNTTVL--------GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW 109 (349)
Q Consensus 41 ~~~~~~~l~p~~l~---~~~~~d~s~~l~--------g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~ 109 (349)
.+||++.|+|.... ..+++|++|.+- +.++..|+..|+|...+ +-+||.+..+.|...++..
T Consensus 10 ~tfddvll~P~~~~~~~~~~~v~~~t~~~~~~~~~~~~i~l~iP~~Satmdtvt------gdalAiala~~gG~g~Ih~- 82 (502)
T PRK07107 10 RTFSEYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVS------DDNMAIALAREGGLSFIFG- 82 (502)
T ss_pred ccccceEEccCCCCCCcCccceeccccccccccCcccccccCCChHHHHHHHHh------hHHHHHHHHHcCCCeEeeC-
Confidence 47999999998763 457889998875 46688899999997643 5689999888888877643
Q ss_pred CCCCHHHHHhh----CC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCC----CCCC-chhHHhhhhcCCCCc
Q 018919 110 STSSVEEVAST----GP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNRFTLPPF 178 (349)
Q Consensus 110 ~~~~~e~i~~~----~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~----p~~g-~r~~d~~~~~~~p~~ 178 (349)
++++|+.++. +. .......+.-.....+.+.++.+.+.+...+.|.=+. -..| ...+|++.....+..
T Consensus 83 -n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~ 161 (502)
T PRK07107 83 -SQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDT 161 (502)
T ss_pred -CCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCC
Confidence 2455553321 11 0000111111111234456666666676666542210 0000 112333311000000
Q ss_pred -----Ccc-cccCCCCCCch--HHHHHHHHHh--cCCcEE----------------------------------EEEec-
Q 018919 179 -----LTL-KNFQGLDLGKM--DEDVKWLQTI--TKLPIL----------------------------------VKGVL- 213 (349)
Q Consensus 179 -----~~~-~~~~~~~~~~~--~~~i~~i~~~--~~~pv~----------------------------------vK~v~- 213 (349)
++. +... ..+++. .+.++.+.+. ..+||+ ...+.
T Consensus 162 ~V~dIMt~~~~~i-tv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~ 240 (502)
T PRK07107 162 KVKDFMTPFEKLV-TANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGAGINT 240 (502)
T ss_pred CHHHHhCCCCCeE-EECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeeeccCh
Confidence 000 0000 001111 1112222211 012222 11121
Q ss_pred --CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 214 --TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 214 --~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
..+.++.+.++|+|.|++.+.-|. .....+.+.++++..+.++ .+..|-|-+++++..++.+|||++.+|
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd~a~g~----~~~~~~~i~~ir~~~~~~~-~V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCIDSSEGY----SEWQKRTLDWIREKYGDSV-KVGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeecCcccc----cHHHHHHHHHHHHhCCCCc-eEEeccccCHHHHHHHHHcCCCEEEEC
Confidence 125578899999999999643221 1223677888877664233 466788999999999999999999884
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.21 Score=47.04 Aligned_cols=93 Identities=18% Similarity=0.308 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH----HHhCCCEEEEchH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRP 290 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka----l~~GA~~V~ig~~ 290 (349)
+.++.+.+.|++++.+.++.|-...-.. -..+.+..+++.+++++||++.=|=.+-.++++. -.+|||+|++..|
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 3356678899999999766442111111 1234455556666678999887666666776653 3489999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHH
Q 018919 291 VVYSLAAEGEKGVRRVLEMLR 311 (349)
Q Consensus 291 ~l~~~~~~G~~gv~~~l~~l~ 311 (349)
+++. ..++++.++++.+.
T Consensus 106 ~~~~---~s~~~l~~y~~~ia 123 (289)
T PF00701_consen 106 YYFK---PSQEELIDYFRAIA 123 (289)
T ss_dssp TSSS---CCHHHHHHHHHHHH
T ss_pred cccc---chhhHHHHHHHHHH
Confidence 8753 23455555544443
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.44 Score=43.28 Aligned_cols=41 Identities=32% Similarity=0.416 Sum_probs=36.4
Q ss_pred HHHHHHHHHhc-CCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++.+++.+ ++|+++.+ +.+.++++.+.++|||.|++.+
T Consensus 167 ~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 167 PELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred HHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence 57899999988 89998876 6899999999999999999965
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.42 Score=42.89 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=54.1
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG- 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~- 211 (349)
.+++.....+..++..|++.+-+-- +. ++. .+...+.++++++.+++|+++.+
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~-~s-----------Ga~--------------~~v~~e~i~~Vk~~~~~Pv~vGGG 184 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEA-GS-----------GAS--------------YPVNPETISLVKKASGIPLIVGGG 184 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEc-CC-----------CCC--------------CCCCHHHHHHHHHhhCCCEEEeCC
Confidence 3566777777888888999876522 11 010 01114779999998899998877
Q ss_pred ecCHHHHHHHHHcCCCEEEE
Q 018919 212 VLTAEDARIAVQAGAAGIIV 231 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v 231 (349)
+.++|+++.+.++|+|+|++
T Consensus 185 Irs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 185 IRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CCCHHHHHHHHHcCCCEEEe
Confidence 68999999999999999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.35 Score=43.86 Aligned_cols=72 Identities=26% Similarity=0.343 Sum_probs=54.5
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcEEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPILVKG 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~ 211 (349)
.+++.....+..++..|...+.+. .+ |. + .+ .+.++.+++.+ +.|+++.+
T Consensus 132 ~~~e~~~ayA~aae~~g~~ivyLe-~S---G~-----------~-----------~~---~e~I~~v~~~~~~~pl~vGG 182 (219)
T cd02812 132 LKPEDAAAYALAAEYLGMPIVYLE-YS---GA-----------Y-----------GP---PEVVRAVKKVLGDTPLIVGG 182 (219)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeC-CC---CC-----------c-----------CC---HHHHHHHHHhcCCCCEEEeC
Confidence 466777778888888897766654 11 10 0 01 46799999988 99999877
Q ss_pred -ecCHHHHHHHHHcCCCEEEEec
Q 018919 212 -VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 212 -v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
+.++|+|+.+.++|||.|++.+
T Consensus 183 GIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 183 GIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CCCCHHHHHHHHHcCCCEEEECc
Confidence 6899999999999999999954
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.2 Score=38.29 Aligned_cols=128 Identities=20% Similarity=0.178 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec-
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL- 213 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~- 213 (349)
+...+.++.+.+.|++.+.+...... +.. .... ++.++.+++..++|+++....
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~--------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSD--------------PEE----------AETDDKEVLKEVAAETDLPLGVQLAIN 67 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEEC--------------ccc----------CCCccccHHHHHHhhcCCcEEEEEccC
Confidence 45677888888889998876432211 100 0011 245777777778999887752
Q ss_pred CHHH-----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 214 TAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 214 ~~~~-----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+... ++.+.++|+|+|.+....+. ...-..+.+.++++.+ .+++++..-......+...+...|++.+.+.
T Consensus 68 ~~~~~~~~~a~~~~~~g~d~v~l~~~~~~---~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~ 143 (200)
T cd04722 68 DAAAAVDIAAAAARAAGADGVEIHGAVGY---LAREDLELIRELREAV-PDVKVVVKLSPTGELAAAAAEEAGVDEVGLG 143 (200)
T ss_pred CchhhhhHHHHHHHHcCCCEEEEeccCCc---HHHHHHHHHHHHHHhc-CCceEEEEECCCCccchhhHHHcCCCEEEEc
Confidence 2222 46899999999999543211 0011345566666655 3577776654443333222467899999998
Q ss_pred hHH
Q 018919 289 RPV 291 (349)
Q Consensus 289 ~~~ 291 (349)
..+
T Consensus 144 ~~~ 146 (200)
T cd04722 144 NGG 146 (200)
T ss_pred CCc
Confidence 644
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=94.24 E-value=2 Score=39.16 Aligned_cols=123 Identities=21% Similarity=0.189 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-h-HHHHHHHHHhcCCcEEEEEecCHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-M-DEDVKWLQTITKLPILVKGVLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~-~~~i~~i~~~~~~pv~vK~v~~~~ 216 (349)
.+.+..++++|++.|.+|+-- |.. . .+++..+++..+.|+-+-+..+.+
T Consensus 24 v~aA~~a~~aGAdgITvHlRe-----------------------------DrRHI~d~Dv~~l~~~~~~~lNlE~a~~~e 74 (237)
T TIGR00559 24 LRAALIAEQAGADGITVHLRE-----------------------------DRRHIQDRDVYDLKEALTTPFNIEMAPTEE 74 (237)
T ss_pred HHHHHHHHHcCCCEEEecCCC-----------------------------CcCcCCHHHHHHHHHHcCCCEEeccCCCHH
Confidence 456778899999999988732 222 2 467999999888899888889999
Q ss_pred HHHHHHHcCCCEEEEecCCCCCC--CCc---hhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 217 DARIAVQAGAAGIIVSNHGARQL--DYV---PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~--~~~---~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
....+.+.-.+.+++-.--.-++ ++| ....+.|.++.+.++ -++.++.+-. .+++..+..+|||.|=+-
T Consensus 75 mi~ia~~vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~---~~qi~~A~~~GAd~VELh 151 (237)
T TIGR00559 75 MIRIAEEIKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD---KDQISAAAEVGADRIEIH 151 (237)
T ss_pred HHHHHHHcCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCcCEEEEe
Confidence 99999999999999864211111 122 123455555555543 2577887764 788888889999999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
+--+.
T Consensus 152 TG~YA 156 (237)
T TIGR00559 152 TGPYA 156 (237)
T ss_pred chhhh
Confidence 86553
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=94.24 E-value=5.1 Score=37.95 Aligned_cols=191 Identities=18% Similarity=0.115 Sum_probs=99.7
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCC------------CCCHHHHHh-------hCCCceEEEE---e
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS------------TSSVEEVAS-------TGPGIRFFQL---Y 130 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~-------~~~~~~~~Ql---~ 130 (349)
.++.+|-.+ |.--|+.+.+.|...+..+.. ..+++++.. ...-|..+-+ |
T Consensus 15 ~~~~~pg~~--------D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~Gy 86 (290)
T TIGR02321 15 RLFTAMAAH--------NPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGF 86 (290)
T ss_pred CCEEecccc--------CHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCC
Confidence 356677433 235778888888886643321 124444332 2222333322 3
Q ss_pred ecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEE
Q 018919 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPIL 208 (349)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~ 208 (349)
+ +...+.+.+++++++|+.+|.|- |...+ +| .++..+ ....+.+.+. .+.|+..++.- +.+++
T Consensus 87 G--~~~~v~~tV~~~~~aGvagi~IE-Dq~~p-k~-----cg~~~~------g~~~l~~~ee~~~kI~Aa~~a~~~~d~~ 151 (290)
T TIGR02321 87 G--NAVNVHYVVPQYEAAGASAIVME-DKTFP-KD-----TSLRTD------GRQELVRIEEFQGKIAAATAARADRDFV 151 (290)
T ss_pred C--CcHHHHHHHHHHHHcCCeEEEEe-CCCCC-cc-----cccccC------CCccccCHHHHHHHHHHHHHhCCCCCEE
Confidence 2 33346778899999999887652 32111 00 111000 0001123332 45566665543 44454
Q ss_pred EEEe-------cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 018919 209 VKGV-------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 277 (349)
Q Consensus 209 vK~v-------~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka 277 (349)
+--. ...++ ++...++|||.|.+ +|+ ..+.+.+.++.+.+...+|++...|-.-.-.+...
T Consensus 152 I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv--~~~------~~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l 223 (290)
T TIGR02321 152 VIARVEALIAGLGQQEAVRRGQAYEEAGADAILI--HSR------QKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADI 223 (290)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHcCCCEEEe--cCC------CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHH
Confidence 4222 11233 56688999999988 321 23467777888877555788654431111123345
Q ss_pred HHhC-CCEEEEchHHHHH
Q 018919 278 LALG-ASGIFIGRPVVYS 294 (349)
Q Consensus 278 l~~G-A~~V~ig~~~l~~ 294 (349)
-++| ...|..|...+++
T Consensus 224 ~~lg~~~~v~~g~~~~~a 241 (290)
T TIGR02321 224 AALSKVGIVIYGNHAIRA 241 (290)
T ss_pred HHhcCCcEEEEChHHHHH
Confidence 5688 7888888776654
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=2 Score=41.42 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEE-EEe
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILV-KGV 212 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~v-K~v 212 (349)
+...+.++.++++|++++.+|-... . ..++.-+. + ..-+.. |+.++++++.. ++||+. +++
T Consensus 151 ~~~~~~~~~l~~aG~d~i~vh~Rt~-------~-~~g~~~~~-----~---~~~~~~~~~~i~~v~~~~~~iPVI~nGgI 214 (333)
T PRK11815 151 EFLCDFVDTVAEAGCDTFIVHARKA-------W-LKGLSPKE-----N---REIPPLDYDRVYRLKRDFPHLTIEINGGI 214 (333)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCch-------h-hcCCCccc-----c---ccCCCcCHHHHHHHHHhCCCCeEEEECCc
Confidence 3456788899999999998873221 0 01111000 0 001223 88999999886 899876 447
Q ss_pred cCHHHHHHHHHcCCCEEEE
Q 018919 213 LTAEDARIAVQAGAAGIIV 231 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v 231 (349)
.++++++.+.+ |+|+|.+
T Consensus 215 ~s~eda~~~l~-~aDgVmI 232 (333)
T PRK11815 215 KTLEEAKEHLQ-HVDGVMI 232 (333)
T ss_pred CCHHHHHHHHh-cCCEEEE
Confidence 89999999987 7999988
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.47 Score=46.33 Aligned_cols=87 Identities=20% Similarity=0.352 Sum_probs=59.0
Q ss_pred HHHhcCCcEEEEEec------CHHHHHHHHHcCCCEEEEecC----CCCC--------------CC--------------
Q 018919 199 LQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNH----GARQ--------------LD-------------- 240 (349)
Q Consensus 199 i~~~~~~pv~vK~v~------~~~~a~~a~~~G~d~I~v~~~----gg~~--------------~~-------------- 240 (349)
+.+..+.|.+..... +.+..++|.++|+.+|+++-- |.|. ..
T Consensus 118 va~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~ 197 (364)
T PLN02535 118 VASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSG 197 (364)
T ss_pred HHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCcccccc
Confidence 333345677877763 235578888899998888521 1110 00
Q ss_pred ---------CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 241 ---------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 241 ---------~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
....+|+.+..+++.. ++||++ .||.+++|+.++..+|+|+|.+.
T Consensus 198 ~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 198 LEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred HHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 0123567777777755 689886 55999999999999999999885
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=94.07 E-value=3.5 Score=39.57 Aligned_cols=134 Identities=17% Similarity=0.194 Sum_probs=79.4
Q ss_pred hHHHHHHHHHcCCeEEecCCC------------CCCHHHHHh-------hCCCceEE-EE-ee-c-CChhHHHHHHHHH-
Q 018919 90 EYATARAASAAGTIMTLSSWS------------TSSVEEVAS-------TGPGIRFF-QL-YV-Y-KDRNVVAQLVRRA- 145 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~-------~~~~~~~~-Ql-~~-~-~~~~~~~~~~~~~- 145 (349)
|..+|+.+.++|+..++-.-+ +.+++++.. ..+.++.+ -+ |. . .+++...+.+.++
T Consensus 44 D~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~ 123 (332)
T PLN02424 44 DYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRML 123 (332)
T ss_pred CHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 568999999999998753211 246666532 22333322 11 11 1 3566555556666
Q ss_pred HHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-------------
Q 018919 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV------------- 212 (349)
Q Consensus 146 ~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v------------- 212 (349)
.+.|++++-| ..- .....+.|+.+. ..++||+--+-
T Consensus 124 ~eaGa~aVKl--EGg----------------------------~~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGyk 172 (332)
T PLN02424 124 KEGGMDAVKL--EGG----------------------------SPSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFR 172 (332)
T ss_pred HHhCCcEEEE--CCC----------------------------cHHHHHHHHHHH-HcCCCEEEeecccceeehhhcCcc
Confidence 6789988653 210 000135677776 35888872211
Q ss_pred ---cC-------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 213 ---LT-------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 213 ---~~-------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
.+ .++|+.+.++||++|++-+ .+. ....+|.+.+ .+|+|+-|
T Consensus 173 vqGr~~~~a~~li~dA~ale~AGAf~ivLE~---------Vp~-~la~~It~~l--~IPtIGIG 224 (332)
T PLN02424 173 PQGRTAESAVKVVETALALQEAGCFAVVLEC---------VPA-PVAAAITSAL--QIPTIGIG 224 (332)
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCcEEEEcC---------CcH-HHHHHHHHhC--CCCEEeec
Confidence 11 2578889999999999832 222 2667777777 79998654
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.74 Score=40.63 Aligned_cols=117 Identities=25% Similarity=0.261 Sum_probs=79.8
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCC
Q 018919 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKL 205 (349)
Q Consensus 126 ~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 205 (349)
.+-+....+.+...+.++.+.+.|++.++++...+. ..+.++.+++....
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~------------------------------~~e~~~~~~~~~~~ 63 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQ------------------------------PAELISQLREKLPE 63 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCC------------------------------HHHHHHHHHHhCCC
Confidence 344555578888889999999999999999875431 02345555554332
Q ss_pred -cEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCE
Q 018919 206 -PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 284 (349)
Q Consensus 206 -pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~ 284 (349)
-+-...+.+.++++.|.++|+|+|++. | .+++ +.++++.. +++.+ -| +.|++++.++...|||.
T Consensus 64 ~~~g~gtvl~~d~~~~A~~~gAdgv~~p-~------~~~~----~~~~~~~~--~~~~i-~G-~~t~~e~~~A~~~Gady 128 (187)
T PRK07455 64 CIIGTGTILTLEDLEEAIAAGAQFCFTP-H------VDPE----LIEAAVAQ--DIPII-PG-ALTPTEIVTAWQAGASC 128 (187)
T ss_pred cEEeEEEEEcHHHHHHHHHcCCCEEECC-C------CCHH----HHHHHHHc--CCCEE-cC-cCCHHHHHHHHHCCCCE
Confidence 233334567799999999999999652 2 1121 22233333 45544 34 99999999999999999
Q ss_pred EEE
Q 018919 285 IFI 287 (349)
Q Consensus 285 V~i 287 (349)
|.+
T Consensus 129 v~~ 131 (187)
T PRK07455 129 VKV 131 (187)
T ss_pred EEE
Confidence 987
|
|
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=5.9 Score=38.02 Aligned_cols=81 Identities=23% Similarity=0.264 Sum_probs=59.5
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCC-C--ch-hhHHHHHHHHHHhcCCCcEEEecCCCCH-------------
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLD-Y--VP-ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 271 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~-~--~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~------------- 271 (349)
.+|++|+... +.|+|.+-++. ||-.... + .| -.++.|.+|.+.+. ++|++.=||=..+
T Consensus 164 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 164 TQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 4688887766 47999999874 5543210 0 11 35789999998873 5899988875333
Q ss_pred ---------HHHHHHHHhCCCEEEEchHHHHH
Q 018919 272 ---------TDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 272 ---------~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
+|+.||+.+|..-|=++|-+..+
T Consensus 243 ~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~a 274 (321)
T PRK07084 243 LKDAIGIPEEQLRKAAKSAVCKINIDSDGRLA 274 (321)
T ss_pred cccCCCCCHHHHHHHHHcCCceeccchHHHHH
Confidence 88999999999999999976543
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.45 Score=46.04 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=55.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE-
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG- 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~- 211 (349)
+.+...+.++.+++.|+|.+.++...... +. . . ..+.+ |+..+++|+.+++||++-+
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-------------~~-~--~-----~~~~~~~~~~~~ik~~~~ipVi~~G~ 283 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVP-------------AR-I--D-----VYPGYQVPFAEHIREHANIATGAVGL 283 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------------CC-C--C-----CCccccHHHHHHHHhhcCCcEEEeCC
Confidence 45667788899999999999887654210 00 0 0 01222 6778899999999986544
Q ss_pred ecCHHHHHHHHHcC-CCEEEE
Q 018919 212 VLTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 212 v~~~~~a~~a~~~G-~d~I~v 231 (349)
+.++++++.+++.| +|.|.+
T Consensus 284 i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 284 ITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred CCCHHHHHHHHHcCCCChHHh
Confidence 57899999999987 999866
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.44 Score=44.94 Aligned_cols=92 Identities=20% Similarity=0.350 Sum_probs=57.4
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+++++||++.=|=.+-.++++ +-.+|||+|++-.|++
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 456788999999986554421111111 23445556666666789886555445566554 3347999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. ..++++.++++.+.+
T Consensus 108 ~~---~~~~~i~~~~~~ia~ 124 (292)
T PRK03170 108 NK---PTQEGLYQHFKAIAE 124 (292)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 63 235565555555544
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.52 Score=46.02 Aligned_cols=42 Identities=26% Similarity=0.499 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 245 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 245 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+|+.|..+++.- ++|||+=| |.+++|+.+++.+|+|+|.|..
T Consensus 212 tW~di~wlr~~~--~~PiivKg-V~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 212 SWKDVQWLQTIT--KLPILVKG-VLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CHHHHHHHHhcc--CCCEEeec-CCCHHHHHHHHHcCCCEEEECC
Confidence 566777777654 78988755 7899999999999999999874
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.39 Score=45.74 Aligned_cols=101 Identities=27% Similarity=0.288 Sum_probs=65.3
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc-CCCCCCc---h-HHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF-QGLDLGK---M-DEDVK 197 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~-~~~~~~~---~-~~~i~ 197 (349)
.|.++.|-+ +.+.+.+.++.+++.|+|++.+ +++...+.+. |.... ++...+. .|+-.+. . .+.|+
T Consensus 162 ~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~-~NT~~~~~~i-d~~~~-----~~~~~~~~GGLSG~~ikp~al~~v~ 232 (310)
T COG0167 162 VPVFVKLAP--NITDIDEIAKAAEEAGADGLIA-INTTKSGMKI-DLETK-----KPVLANETGGLSGPPLKPIALRVVA 232 (310)
T ss_pred CceEEEeCC--CHHHHHHHHHHHHHcCCcEEEE-Eeeccccccc-ccccc-----ccccCcCCCCcCcccchHHHHHHHH
Confidence 567787754 6777889999999999999865 3433211110 11100 1111111 1111111 2 57788
Q ss_pred HHHHhcC--CcE-EEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 198 WLQTITK--LPI-LVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 198 ~i~~~~~--~pv-~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++++.++ +|| .+.++.+.+||..-+.+||+.|.|.
T Consensus 233 ~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~ 270 (310)
T COG0167 233 ELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVG 270 (310)
T ss_pred HHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheee
Confidence 8888876 996 4667899999999999999999884
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.2 Score=40.45 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 273 (349)
+.++.+.+.+++|+++- +....|.+.|+|+|.+... + . .+.++++.++ .--+|+.+-.++-.+
T Consensus 61 ~~l~~l~~~~gv~liIN-----d~~dlA~~~~adGVHLg~~-----d--~----~~~~~r~~~~-~~~iiG~s~~~s~~~ 123 (221)
T PRK06512 61 EKLVPVIQEAGAAALIA-----GDSRIAGRVKADGLHIEGN-----L--A----ALAEAIEKHA-PKMIVGFGNLRDRHG 123 (221)
T ss_pred HHHHHHHHHhCCEEEEe-----CHHHHHHHhCCCEEEECcc-----c--c----CHHHHHHhcC-CCCEEEecCCCCHHH
Confidence 45666777778999874 3466788899999987421 1 0 1334444443 223565555678888
Q ss_pred HHHHHHhCCCEEEEchH
Q 018919 274 VFKALALGASGIFIGRP 290 (349)
Q Consensus 274 v~kal~~GA~~V~ig~~ 290 (349)
+.++.+.|||.|.+|.-
T Consensus 124 a~~A~~~gaDYv~~Gpv 140 (221)
T PRK06512 124 AMEIGELRPDYLFFGKL 140 (221)
T ss_pred HHHhhhcCCCEEEECCC
Confidence 98988999999999964
|
|
| >PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.39 Score=43.52 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=56.4
Q ss_pred cCHHHHHHHHHcCCCEEEEecCCCC-CCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 213 LTAEDARIAVQAGAAGIIVSNHGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~~~gg~-~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
.+.++++.+.+.|++-+++. .+.. +..+...+...+..+++.++.+.+++..||||-. ...+.-..+.|.+.+|||+
T Consensus 117 ~t~~~~~~l~~~g~~~~v~h-~a~~a~~~G~v~s~~e~~~ir~~~~~~~~i~VtpGIr~~-~~~~~dq~rvd~iVVGR~I 194 (218)
T PRK13305 117 WTLDDARDWHRIGVRQAIYH-RGRDAQASGQQWGEADLARMKALSDIGLELSITGGITPA-DLPLFKDIRVKAFIAGRAL 194 (218)
T ss_pred cCcchHHHHHHcCCHHHHHH-HHHHHHHhCCCCCHHHHHHHHHHhCCCCcEEEeCCcCcc-ccccccccCCCEEEECCcc
Confidence 45566666777887644331 1110 0011122234455666666556779999999953 2234456788999999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l~~el~~ 316 (349)
..+ +......+.+.++++.
T Consensus 195 t~A------~dP~~aa~~i~~~i~~ 213 (218)
T PRK13305 195 AGA------ANPAQVAADFHAQIDA 213 (218)
T ss_pred cCC------CCHHHHHHHHHHHHHH
Confidence 753 2223456677777654
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.85 Score=39.63 Aligned_cols=83 Identities=20% Similarity=0.163 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC-CCcEEEecCCCC--------HHHHHHHHHhCCCEEE
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRR--------GTDVFKALALGASGIF 286 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~-~ipvia~GGI~~--------~~dv~kal~~GA~~V~ 286 (349)
+.++.+.+.|+++|.+.+ +.+..+.+..++ ++||++.=|-.+ -+.+.++..+|||+++
T Consensus 17 ~~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~ 83 (201)
T cd00945 17 KLCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEID 83 (201)
T ss_pred HHHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 345678889999998842 556666666666 788876444333 2445567779999999
Q ss_pred EchHHHHHHhhcCHHHHHHHHHHHHH
Q 018919 287 IGRPVVYSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 287 ig~~~l~~~~~~G~~gv~~~l~~l~~ 312 (349)
+..++.+.... .++++.++++.+.+
T Consensus 84 v~~~~~~~~~~-~~~~~~~~~~~i~~ 108 (201)
T cd00945 84 VVINIGSLKEG-DWEEVLEEIAAVVE 108 (201)
T ss_pred EeccHHHHhCC-CHHHHHHHHHHHHH
Confidence 98887654210 13444444444433
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.4 Score=44.13 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
|..|.+..+..++.++. .+.+.+.+..+.+.|++++.|... ....+..|..+++ .+.|||.+-|..+-+
T Consensus 58 ~~~L~~~~~~~gi~f~s-tpfd~~s~d~l~~~~~~~~KIaS~-------dl~n~~lL~~~A~---tgkPvIlSTG~stl~ 126 (241)
T PF03102_consen 58 HKELFEYCKELGIDFFS-TPFDEESVDFLEELGVPAYKIASG-------DLTNLPLLEYIAK---TGKPVILSTGMSTLE 126 (241)
T ss_dssp HHHHHHHHHHTT-EEEE-EE-SHHHHHHHHHHT-SEEEE-GG-------GTT-HHHHHHHHT---T-S-EEEE-TT--HH
T ss_pred HHHHHHHHHHcCCEEEE-CCCCHHHHHHHHHcCCCEEEeccc-------cccCHHHHHHHHH---hCCcEEEECCCCCHH
Confidence 55666666667887765 456889999999999999999532 2234566666655 379999999999999
Q ss_pred HHHHHHH-h---CCCEEE
Q 018919 273 DVFKALA-L---GASGIF 286 (349)
Q Consensus 273 dv~kal~-~---GA~~V~ 286 (349)
++.+|+. + |..-+.
T Consensus 127 EI~~Av~~~~~~~~~~l~ 144 (241)
T PF03102_consen 127 EIERAVEVLREAGNEDLV 144 (241)
T ss_dssp HHHHHHHHHHHHCT--EE
T ss_pred HHHHHHHHHHhcCCCCEE
Confidence 9988776 4 554443
|
It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.7 Score=42.17 Aligned_cols=83 Identities=25% Similarity=0.335 Sum_probs=58.9
Q ss_pred CCcEEEEEec------CHHHHHHHHHcCCCEEEEecC----CCC--------CC-------------------------C
Q 018919 204 KLPILVKGVL------TAEDARIAVQAGAAGIIVSNH----GAR--------QL-------------------------D 240 (349)
Q Consensus 204 ~~pv~vK~v~------~~~~a~~a~~~G~d~I~v~~~----gg~--------~~-------------------------~ 240 (349)
+.|+++-... +.+..+++.++|+++|+++-. |.| +. .
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI 196 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence 3677765432 246678899999999998731 111 00 0
Q ss_pred CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 241 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 241 ~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+..+++.+.++++.. ++||++- ||.+.+|+.++...|+|+|.+..
T Consensus 197 ~~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 197 DPTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 0124567788887766 7899987 68999999999999999999864
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=93.79 E-value=6.1 Score=37.28 Aligned_cols=179 Identities=13% Similarity=0.063 Sum_probs=103.0
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcC-CeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChh
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRN 136 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G-~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~ 136 (349)
.|.++.|+.-..-.+.++-..+.+-..+.| +.+++ + ++...+.||..+ ... -+.++++.. .+.+
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~~t~ 83 (290)
T TIGR00683 5 FSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLK 83 (290)
T ss_pred EeeeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHH
Confidence 366777875444344455567777778888 55443 2 334567766432 122 245566543 3556
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhc-CCcEEEEEe--
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTIT-KLPILVKGV-- 212 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~-~~pv~vK~v-- 212 (349)
.+.++++.+++.|++++.+.- |. |. +. +.+ ..+..+.+.+.+ ++|+++=.+
T Consensus 84 ~~i~la~~a~~~Gad~v~v~~--P~-----------y~-~~-----------~~~~i~~yf~~v~~~~~~lpv~lYn~P~ 138 (290)
T TIGR00683 84 EAVELGKYATELGYDCLSAVT--PF-----------YY-KF-----------SFPEIKHYYDTIIAETGGLNMIVYSIPF 138 (290)
T ss_pred HHHHHHHHHHHhCCCEEEEeC--Cc-----------CC-CC-----------CHHHHHHHHHHHHhhCCCCCEEEEeCcc
Confidence 778899999999999998632 21 00 10 111 245577776666 799986553
Q ss_pred -----cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 213 -----LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 213 -----~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
.+++..+++.+.. +-+|.-+ . ..+..+.++.+..+ +..|+ +|. .+..+..+.+||++.+
T Consensus 139 ~tg~~l~~~~i~~L~~~pnv~giK~s--------~--~d~~~~~~~~~~~~-~~~v~-~G~---d~~~~~~l~~G~~G~i 203 (290)
T TIGR00683 139 LTGVNMGIEQFGELYKNPKVLGVKFT--------A--GDFYLLERLKKAYP-NHLIW-AGF---DEMMLPAASLGVDGAI 203 (290)
T ss_pred ccccCcCHHHHHHHhcCCCEEEEEeC--------C--CCHHHHHHHHHhCC-CCEEE-ECc---hHHHHHHHHCCCCEEE
Confidence 4567777777642 1222221 1 12344455554443 45443 442 3556778899999998
Q ss_pred EchHH
Q 018919 287 IGRPV 291 (349)
Q Consensus 287 ig~~~ 291 (349)
.+..-
T Consensus 204 ~~~~n 208 (290)
T TIGR00683 204 GSTFN 208 (290)
T ss_pred ecHHH
Confidence 87754
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=93.78 E-value=4.6 Score=37.65 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
++|+.+.++||++|++- +.+ .+...+|.+.+ .+|+|+-|
T Consensus 164 ~~A~a~e~AGA~~ivlE---------~vp-~~~a~~It~~l--~iP~iGIG 202 (263)
T TIGR00222 164 EDALALEEAGAQLLVLE---------CVP-VELAAKITEAL--AIPVIGIG 202 (263)
T ss_pred HHHHHHHHcCCCEEEEc---------CCc-HHHHHHHHHhC--CCCEEeec
Confidence 56888999999999983 233 37777888877 79998654
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.73 E-value=2.8 Score=37.81 Aligned_cols=114 Identities=16% Similarity=0.197 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCeEEecCC----------------CCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEE
Q 018919 92 ATARAASAAGTIMTLSSW----------------STSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155 (349)
Q Consensus 92 ~la~aa~~~G~~~~~~~~----------------~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i 155 (349)
.+...|.++|+++++... ...++.+.++..+...++-+.. . ..+.++++++.|+|.+.+
T Consensus 56 ~~~~lc~~~~v~liINd~~dlA~~~~AdGVHlGq~D~~~~~ar~~~~~~~iIG~S~-h----~~eea~~A~~~g~DYv~~ 130 (211)
T COG0352 56 KLRALCQKYGVPLIINDRVDLALAVGADGVHLGQDDMPLAEARELLGPGLIIGLST-H----DLEEALEAEELGADYVGL 130 (211)
T ss_pred HHHHHHHHhCCeEEecCcHHHHHhCCCCEEEcCCcccchHHHHHhcCCCCEEEeec-C----CHHHHHHHHhcCCCEEEE
Confidence 455566777777666432 1123444444433222332211 1 245677888889999875
Q ss_pred ecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 156 ~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
. |. |..+.+ +. .+.. ++.++++++...+|+++=+-.+++.+..+.++|+++|.+.
T Consensus 131 G---pi-----------fpT~tK---~~-----~~~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 131 G---PI-----------FPTSTK---PD-----APPLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred C---Cc-----------CCCCCC---CC-----CCccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 2 21 111111 00 1223 8889999998889998877789999999999999999885
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.36 Score=48.92 Aligned_cols=232 Identities=16% Similarity=0.195 Sum_probs=130.4
Q ss_pred hhcccccccccccC-CC-CCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l~-~~-~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|.... .. +++|++|++ ++.+..||+.|||...+ +..||.+.++.|..+++.. +.+.++..
T Consensus 13 ltfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~Pi~sa~Mdtvt------~~~MAiaLAr~GGiGvih~--nl~~~~q~ 83 (479)
T PRK07807 13 LTYDDVFLVPSRSDVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGLVVLPQ--DIPIDVVA 83 (479)
T ss_pred cCccceEecccccCccCCCceecccCC-CCccccceeecCCcchh------HHHHHHHHHHCCCceEeeC--CCCHHHHH
Confidence 47999999998763 34 488999974 78899999999997754 7799999999998888763 34454433
Q ss_pred hhCC----CceEE-EEeecCChhHHHHHHHHHHHcCCCEEEEecCCC-CCC-chhHHhhhhc-CCCC-cCcccccCCCCC
Q 018919 119 STGP----GIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP-RLG-RREADIKNRF-TLPP-FLTLKNFQGLDL 189 (349)
Q Consensus 119 ~~~~----~~~~~-Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p-~~g-~r~~d~~~~~-~~p~-~~~~~~~~~~~~ 189 (349)
+... ...+. +...-.......+.++.+.+.+...+.+.-+.- ..| ...+|++..- ..|- .+-.... -...
T Consensus 84 ~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~~~~~V~diMt~~~-itV~ 162 (479)
T PRK07807 84 EVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRFTQVRDVMSTDL-VTLP 162 (479)
T ss_pred HHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCccCCCHHHhccCCc-eEEC
Confidence 2211 11110 000001112345566666777776665521110 001 1123332100 0000 0000000 0011
Q ss_pred Cch--HHHHHHHHHh-c-CCcEEEE-----E------------------------------e--cCHHHHHHHHHcCCCE
Q 018919 190 GKM--DEDVKWLQTI-T-KLPILVK-----G------------------------------V--LTAEDARIAVQAGAAG 228 (349)
Q Consensus 190 ~~~--~~~i~~i~~~-~-~~pv~vK-----~------------------------------v--~~~~~a~~a~~~G~d~ 228 (349)
++. .+.++.+.+. . .+||+=. + + ...+.++.+.++|+|.
T Consensus 163 ~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGvd~ 242 (479)
T PRK07807 163 AGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGVDV 242 (479)
T ss_pred CCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHhCCCE
Confidence 111 2223333221 0 1232210 0 0 1125578889999999
Q ss_pred EEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 229 IIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 229 I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
|++....|. +...++.+.++++..+ +++|| .|.|.|.+.+..++.+|||+|-+|
T Consensus 243 i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~-agnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 243 LVVDTAHGH----QEKMLEALRAVRALDP-GVPIV-AGNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred EEEeccCCc----cHHHHHHHHHHHHHCC-CCeEE-eeccCCHHHHHHHHHcCCCEEEEC
Confidence 999754332 4456788888888763 56655 578999999999999999998744
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.91 Score=45.70 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=74.3
Q ss_pred ChhHHHHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCC---cCcccccCCCCCCch-HHHHHHHHHhcC--Cc
Q 018919 134 DRNVVAQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPP---FLTLKNFQGLDLGKM-DEDVKWLQTITK--LP 206 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~---~~~~~~~~~~~~~~~-~~~i~~i~~~~~--~p 206 (349)
+++...++++.+.+.|.+++ ++|= +.++........ +++.++. .+.+. .+...++....+ ..
T Consensus 144 ~~~~l~~l~~~a~~lGl~~lvEvh~--------~~El~~al~~~a~iiGiNnRdL---~t~~vd~~~~~~l~~~ip~~~~ 212 (454)
T PRK09427 144 DDEQYRQLAAVAHSLNMGVLTEVSN--------EEELERAIALGAKVIGINNRNL---RDLSIDLNRTRELAPLIPADVI 212 (454)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECC--------HHHHHHHHhCCCCEEEEeCCCC---ccceECHHHHHHHHhhCCCCcE
Confidence 34567788889999999987 4431 111221111111 2222332 11222 344455555442 22
Q ss_pred -EEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 018919 207 -ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 285 (349)
Q Consensus 207 -v~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V 285 (349)
|.--|+.++++++.+.. |+|++.|... +-..+.....+.++.. ..+.| -||++.+|+..+..+|||++
T Consensus 213 ~vseSGI~t~~d~~~~~~-~~davLiG~~----lm~~~d~~~~~~~L~~---~~vKI---CGit~~eda~~a~~~GaD~l 281 (454)
T PRK09427 213 VISESGIYTHAQVRELSP-FANGFLIGSS----LMAEDDLELAVRKLIL---GENKV---CGLTRPQDAKAAYDAGAVYG 281 (454)
T ss_pred EEEeCCCCCHHHHHHHHh-cCCEEEECHH----HcCCCCHHHHHHHHhc---ccccc---CCCCCHHHHHHHHhCCCCEE
Confidence 33345689999999765 7999988422 1112222333443322 23333 47999999999999999999
Q ss_pred EE
Q 018919 286 FI 287 (349)
Q Consensus 286 ~i 287 (349)
++
T Consensus 282 Gf 283 (454)
T PRK09427 282 GL 283 (454)
T ss_pred ee
Confidence 87
|
|
| >COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.67 E-value=3 Score=38.56 Aligned_cols=100 Identities=21% Similarity=0.256 Sum_probs=61.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc-CCCc-EEEecCCCC---HHHHHHHHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIP-VFLDGGVRR---GTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~-~~ip-via~GGI~~---~~dv~kal~~GA~~V~ig~~~l 292 (349)
++...+.|+|.+.|---+. . .| .+-+++....+.-. .++| |+.+.|+.. ...+.-|++.||++|..||+.-
T Consensus 192 ~k~fsd~GadvlKvevPvy--v-eG-e~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~GRAtW 267 (306)
T COG3684 192 MKEFSDSGADVLKVEVPVY--V-EG-EQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAGRATW 267 (306)
T ss_pred HHHhccCCCceEEeeccee--c-cC-ccHHHHHHHHHhhcCCCCCeEEEecCccHHHhHHHHHHHHHcCCceeEechhhh
Confidence 4556678999988743210 0 11 23333333322211 1566 677888876 3456668889999999999865
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 293 YSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
.+....|. ...+.++.-.|+.+|.+|++.
T Consensus 268 a~~v~~g~-----------d~~re~Lrt~g~~ni~eL~~v 296 (306)
T COG3684 268 AGVVEQGE-----------DAAREWLRTVGFPNLDELNKV 296 (306)
T ss_pred hcccccCc-----------HHHHHHHHhhccccHHHHHHH
Confidence 43333344 345667778888898888753
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.66 E-value=2.2 Score=38.39 Aligned_cols=112 Identities=18% Similarity=0.144 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCeEEe-cCCCCCCHHHHHhh------CCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 018919 92 ATARAASAAGTIMTL-SSWSTSSVEEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (349)
Q Consensus 92 ~la~aa~~~G~~~~~-~~~~~~~~e~i~~~------~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~ 164 (349)
-.++.|.++|.-.+. +.. .+.+.+.++ ......+-+|...|++ +..+.+++.|.+.+.+|.+--
T Consensus 71 ~e~~ma~~aGAd~~tV~g~--A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~---~~~~~l~~~gvd~~~~H~g~D---- 141 (217)
T COG0269 71 IEARMAFEAGADWVTVLGA--ADDATIKKAIKVAKEYGKEVQIDLIGVWDPE---QRAKWLKELGVDQVILHRGRD---- 141 (217)
T ss_pred HHHHHHHHcCCCEEEEEec--CCHHHHHHHHHHHHHcCCeEEEEeecCCCHH---HHHHHHHHhCCCEEEEEeccc----
Confidence 567888888877542 222 233333222 1223344556555554 455566679999999987532
Q ss_pred hhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 165 READIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 165 r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+. ...+. |+++..+++..+ .++.|-|-.+++++..+.+.|++.+++.
T Consensus 142 ----~q~----------------~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvG 192 (217)
T COG0269 142 ----AQA----------------AGKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADIVIVG 192 (217)
T ss_pred ----Hhh----------------cCCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCEEEEC
Confidence 110 01223 577888877764 6888888899999999999999999983
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=93.65 E-value=1 Score=43.64 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=54.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v 212 (349)
+.+...+.++.+++.|++.+.++..... +. ...+ ++..+++|+.+++||++-+-
T Consensus 239 ~~ee~~~~~~~l~~~g~d~i~vs~g~~~--------------~~-----------~~~~~~~~~~~ik~~~~ipvi~~G~ 293 (338)
T cd02933 239 PEATFSYLAKELNKRGLAYLHLVEPRVA--------------GN-----------PEDQPPDFLDFLRKAFKGPLIAAGG 293 (338)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCC--------------Cc-----------ccccchHHHHHHHHHcCCCEEEECC
Confidence 3455678888999999998877543211 00 0123 78899999999999988776
Q ss_pred cCHHHHHHHHHcC-CCEEEE
Q 018919 213 LTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 213 ~~~~~a~~a~~~G-~d~I~v 231 (349)
.++++++.+++.| +|.|.+
T Consensus 294 i~~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 294 YDAESAEAALADGKADLVAF 313 (338)
T ss_pred CCHHHHHHHHHcCCCCEEEe
Confidence 6799999999876 999977
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.3 Score=39.09 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCcEE-EEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHH
Q 018919 194 EDVKWLQTITKLPIL-VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 255 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~ 255 (349)
..++|+|+++..+.+ +-+-.+++.+.++.++||+.|+.... ..+....-+.+..+++.
T Consensus 158 ~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaGsa----vf~a~d~~~vi~~lr~~ 216 (224)
T KOG3111|consen 158 PKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAGSA----VFGAADPSDVISLLRNS 216 (224)
T ss_pred HHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEecce----eecCCCHHHHHHHHHHH
Confidence 469999998865544 66678899999999999999976321 11222334555555544
|
|
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=93.62 E-value=1.4 Score=42.26 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=60.2
Q ss_pred CceEEEEeec---CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH
Q 018919 123 GIRFFQLYVY---KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL 199 (349)
Q Consensus 123 ~~~~~Ql~~~---~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i 199 (349)
.|..+|--.+ .|.+.+.+.+++++++|++.+-+++.. .+..+.+++|
T Consensus 18 ~PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp~------------------------------~~~A~al~~I 67 (346)
T TIGR00612 18 APIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVPD------------------------------RESAAAFEAI 67 (346)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCC------------------------------HHHHHhHHHH
Confidence 3455665433 355677888999999999998766532 1114568999
Q ss_pred HHhcCCcEEEEEecCHHHHHHHHHcCCCEEEE
Q 018919 200 QTITKLPILVKGVLTAEDARIAVQAGAAGIIV 231 (349)
Q Consensus 200 ~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v 231 (349)
++.+++|++.=+=.++..|..+.+.|+|.|-+
T Consensus 68 ~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRI 99 (346)
T TIGR00612 68 KEGTNVPLVADIHFDYRLAALAMAKGVAKVRI 99 (346)
T ss_pred HhCCCCCEEEeeCCCcHHHHHHHHhccCeEEE
Confidence 99999999986557888999999999999998
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.60 E-value=1.6 Score=42.04 Aligned_cols=186 Identities=15% Similarity=0.128 Sum_probs=108.2
Q ss_pred CChhhHHHHHHHHHcC-CeEEecCCCC---CCHHHHHhhCC---CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecC
Q 018919 86 HPEGEYATARAASAAG-TIMTLSSWST---SSVEEVASTGP---GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (349)
Q Consensus 86 ~~~~~~~la~aa~~~G-~~~~~~~~~~---~~~e~i~~~~~---~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d 158 (349)
.++.-...|+.|.+.| ..+++.+.+- ..++++.+... ......++..-. ..+.+.++++.++|++...-|++
T Consensus 85 ~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG-~l~~eq~~~L~~aGvd~ynhNLe 163 (335)
T COG0502 85 EVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLG-MLTEEQAEKLADAGVDRYNHNLE 163 (335)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccC-CCCHHHHHHHHHcChhheecccc
Confidence 4444568999999999 7777654432 34454433211 011122222111 34467888999999999998888
Q ss_pred CCCCCchhHHhhhhcCCCCcCcccccCCCCCCch---HHHHHHHHHhcCCcEEEEEe----cCH----HHHHHHHHcC-C
Q 018919 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM---DEDVKWLQTITKLPILVKGV----LTA----EDARIAVQAG-A 226 (349)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~---~~~i~~i~~~~~~pv~vK~v----~~~----~~a~~a~~~G-~ 226 (349)
+.. +-|. . + .....+ ++.++.+|+ .++.+...++ -+. +.+..+.+.. +
T Consensus 164 Ts~---------~~y~--~-I-------~tt~t~edR~~tl~~vk~-~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~p 223 (335)
T COG0502 164 TSP---------EFYE--N-I-------ITTRTYEDRLNTLENVRE-AGIEVCSGGIVGLGETVEDRAELLLELANLPTP 223 (335)
T ss_pred cCH---------HHHc--c-c-------CCCCCHHHHHHHHHHHHH-cCCccccceEecCCCCHHHHHHHHHHHHhCCCC
Confidence 721 1111 0 0 001112 455777776 4777666665 344 4467778888 9
Q ss_pred CEEEEec---CCCCCCCC--chhhHHHHHHHHHH--hcCCCcEEEecCCCCHHH--HHHHHHhCCCEEEEchHHH
Q 018919 227 AGIIVSN---HGARQLDY--VPATIMALEEVVKA--TQGRIPVFLDGGVRRGTD--VFKALALGASGIFIGRPVV 292 (349)
Q Consensus 227 d~I~v~~---~gg~~~~~--~~~~~~~l~~i~~~--~~~~ipvia~GGI~~~~d--v~kal~~GA~~V~ig~~~l 292 (349)
|.|-+-. +-|+.+.. ..+.++.++-|+-+ .-.+.-|.++||.-+-.+ ...++.+||+.+++|--++
T Consensus 224 dsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~l 298 (335)
T COG0502 224 DSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYL 298 (335)
T ss_pred CeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccceeeecceEe
Confidence 9888742 35554432 23456666655432 223566777777654433 4567778999999997333
|
|
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.53 E-value=1.4 Score=42.08 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=61.4
Q ss_pred CceEEEEeec---CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH
Q 018919 123 GIRFFQLYVY---KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL 199 (349)
Q Consensus 123 ~~~~~Ql~~~---~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i 199 (349)
.|..+|--.+ .|.+.+.+.+++++++|++.+-++++.. +-.+.+++|
T Consensus 20 aPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~------------------------------e~A~A~~~I 69 (361)
T COG0821 20 APIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDM------------------------------EAAEALKEI 69 (361)
T ss_pred CceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCH------------------------------HHHHHHHHH
Confidence 3456675443 3566788899999999999987776421 114669999
Q ss_pred HHhcCCcEEEEEecCHHHHHHHHHcCCCEEEE
Q 018919 200 QTITKLPILVKGVLTAEDARIAVQAGAAGIIV 231 (349)
Q Consensus 200 ~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v 231 (349)
+++.++|++.-.=.++..|..+.+.|+|.+-+
T Consensus 70 k~~~~vPLVaDiHf~~rla~~~~~~g~~k~RI 101 (361)
T COG0821 70 KQRLNVPLVADIHFDYRLALEAAECGVDKVRI 101 (361)
T ss_pred HHhCCCCEEEEeeccHHHHHHhhhcCcceEEE
Confidence 99999999986657789999999999999988
|
|
| >COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.49 E-value=6 Score=37.86 Aligned_cols=242 Identities=18% Similarity=0.200 Sum_probs=124.3
Q ss_pred eeEcCeec---CcceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCCCCCCHHHHHhh-C--C--------CceEE
Q 018919 63 TTVLGFKI---SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTSSVEEVAST-G--P--------GIRFF 127 (349)
Q Consensus 63 ~~l~g~~~---~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~~~~~~e~i~~~-~--~--------~~~~~ 127 (349)
.+++|+.+ ..|++||=+|...-.+-+.-.+|.++|+++|+..+ +-++. +.+.+... . + +...+
T Consensus 2 ~~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADavKfQt~~--~~d~~t~~~~~~~~~i~~~~~~~sly 79 (347)
T COG2089 2 IKIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADAVKFQTFY--TPDIMTLESKNVPFKIKTLWDKVSLY 79 (347)
T ss_pred eeeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcceeeeeccc--ccccccccccCCccccccccccccHH
Confidence 35666655 46999999876332122223478899999999876 32221 11222111 1 1 11123
Q ss_pred EEee--cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch--HHHHHHHHHhc
Q 018919 128 QLYV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM--DEDVKWLQTIT 203 (349)
Q Consensus 128 Ql~~--~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~--~~~i~~i~~~~ 203 (349)
|+|- .-+.++..++.+.+++.|.-. +.+|. ..+..|+-+.+..|. . + .-+.+. ...|+.+.+.
T Consensus 80 el~e~~~~p~e~~~~Lke~a~~~Gi~~----~SSPf-d~~svd~l~~~~~~a-y--K----IaS~E~~~~plik~iA~~- 146 (347)
T COG2089 80 ELYEEAETPLEWHAQLKEYARKRGIIF----FSSPF-DLTAVDLLESLNPPA-Y--K----IASGEINDLPLIKYIAKK- 146 (347)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCeEE----EecCC-CHHHHHHHHhcCCCe-E--E----ecCccccChHHHHHHHhc-
Confidence 3333 124566667777888877433 34553 344445555554331 0 0 012222 4667777764
Q ss_pred CCcEEEEEe-cCHHHH----HHHHHcCCC-EEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 018919 204 KLPILVKGV-LTAEDA----RIAVQAGAA-GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 277 (349)
Q Consensus 204 ~~pv~vK~v-~~~~~a----~~a~~~G~d-~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka 277 (349)
+.|+++-.- .+.++. ..+.+.|.. .+.++....+.-......+..++.+++.+ +++|=.+.-=..-.-.+.|
T Consensus 147 ~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F--n~~vGlSDHT~g~~a~l~A 224 (347)
T COG2089 147 GKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF--NAIVGLSDHTLGILAPLAA 224 (347)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh--CCccccccCccchhHHHHH
Confidence 779887543 444443 446678876 44443322211111123456677777776 5555544422222333467
Q ss_pred HHhCCCEEEEchHHHHHHhhcCHHHH----HHHHHHHHHHHHHHHHHcCC
Q 018919 278 LALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGC 323 (349)
Q Consensus 278 l~~GA~~V~ig~~~l~~~~~~G~~gv----~~~l~~l~~el~~~m~~~G~ 323 (349)
.++||.. |-+-|.-.....|++.. -+-++.+.+.++..-..+|.
T Consensus 225 vALGA~v--iEKHFtldk~~~GpD~~fSldP~efk~mv~~ir~~~~alG~ 272 (347)
T COG2089 225 VALGASV--IEKHFTLDKSREGPDHAFSLDPDEFKEMVDAIRQVEKALGD 272 (347)
T ss_pred HHhcccc--eeeeeeecCCCCCCCcceecCHHHHHHHHHHHHHHHHHhCC
Confidence 8899864 45666533333444221 12245666666666666664
|
|
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=93.46 E-value=6 Score=36.10 Aligned_cols=123 Identities=17% Similarity=0.230 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-h-HHHHHHHHHhcCCcEEEEEecCHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-M-DEDVKWLQTITKLPILVKGVLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~-~~~i~~i~~~~~~pv~vK~v~~~~ 216 (349)
.+.+..++++|+++|.+|+-- |.. . .+++..+++..+.|+-+-+..+.|
T Consensus 24 v~aA~~a~~aGAdgITvHlRe-----------------------------DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e 74 (234)
T cd00003 24 VEAALLAEKAGADGITVHLRE-----------------------------DRRHIQDRDVRLLRELVRTELNLEMAPTEE 74 (234)
T ss_pred HHHHHHHHHcCCCEEEecCCC-----------------------------CcCcCCHHHHHHHHHHcCCCEEeccCCCHH
Confidence 467788899999999988732 222 2 467999998888899888888999
Q ss_pred HHHHHHHcCCCEEEEecCCCCCC--CCc---hhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 217 DARIAVQAGAAGIIVSNHGARQL--DYV---PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~--~~~---~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
....+.+.-.+.+++-.-..-++ ++| ....+.|.++.+.++ -++.++.+-. .+++..+...||+.|=+-
T Consensus 75 m~~ia~~~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd---~~qi~~A~~~GAd~VELh 151 (234)
T cd00003 75 MLEIALEVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD---PEQIEAAKEVGADRVELH 151 (234)
T ss_pred HHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCcCEEEEe
Confidence 99999999999999864221111 122 123455555555443 2577888764 788888889999999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
+--+.
T Consensus 152 TG~Ya 156 (234)
T cd00003 152 TGPYA 156 (234)
T ss_pred chhhh
Confidence 86553
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=2.3 Score=44.28 Aligned_cols=188 Identities=16% Similarity=0.114 Sum_probs=103.8
Q ss_pred CChHHHHHHHHHhCCccccccc-cCCCcchHHHHH-HHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccc
Q 018919 5 TNVMEYEAIAKEKLPKMVFDYY-ASGAEDQWTLQE-NRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (349)
Q Consensus 5 ~~~~d~~~~a~~~l~~~~~~y~-~~g~~~~~t~~~-n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~ 82 (349)
++.+|+...|..-=....|..= .||+.=...++- +-+.|++++..-+.++ +..+++=+-|..+ | |+.
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~p---nt~lqmL~Rg~N~--v------Gy~ 91 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALP---NTQLSMLLRGQNL--L------GYR 91 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCC---CCceEEEeccccc--c------ccc
Confidence 3456666665543332233222 334433333222 3455666665544443 2333333334432 1 221
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCCCC--------CHHHHHhhCCCceEEEE---ee---cCChhHHHHHHHHHHHc
Q 018919 83 KMAHPEGEYATARAASAAGTIMTLSSWSTS--------SVEEVASTGPGIRFFQL---YV---YKDRNVVAQLVRRAERA 148 (349)
Q Consensus 83 ~l~~~~~~~~la~aa~~~G~~~~~~~~~~~--------~~e~i~~~~~~~~~~Ql---~~---~~~~~~~~~~~~~~~~~ 148 (349)
. +..+.-..+.+.+.+.|+..+ ..+.++ +++.+++... .+|. |. ..+.+...+.++++.++
T Consensus 92 ~-~~d~vv~~~v~~a~~~Gidv~-Rifd~lnd~~n~~~~i~~~k~~G~---~~~~~i~yt~sp~~t~e~~~~~ak~l~~~ 166 (596)
T PRK14042 92 N-YADDVVRAFVKLAVNNGVDVF-RVFDALNDARNLKVAIDAIKSHKK---HAQGAICYTTSPVHTLDNFLELGKKLAEM 166 (596)
T ss_pred c-CChHHHHHHHHHHHHcCCCEE-EEcccCcchHHHHHHHHHHHHcCC---EEEEEEEecCCCCCCHHHHHHHHHHHHHc
Confidence 1 222344568899999998854 323221 2233333321 1221 22 24667788899999999
Q ss_pred CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec----CHHHHHHHHH
Q 018919 149 GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL----TAEDARIAVQ 223 (349)
Q Consensus 149 G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~----~~~~a~~a~~ 223 (349)
|++.|.| -|+. |...|.. .+.++.+++.+++||-+-.=. .......|++
T Consensus 167 Gad~I~I-kDta-------------------------G~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAie 220 (596)
T PRK14042 167 GCDSIAI-KDMA-------------------------GLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVL 220 (596)
T ss_pred CCCEEEe-CCcc-------------------------cCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHH
Confidence 9998775 2332 1234555 677999999889888766532 3455688999
Q ss_pred cCCCEEEEecC
Q 018919 224 AGAAGIIVSNH 234 (349)
Q Consensus 224 ~G~d~I~v~~~ 234 (349)
+|||.|..+-.
T Consensus 221 aGad~iD~ai~ 231 (596)
T PRK14042 221 AGCNHIDTAIS 231 (596)
T ss_pred hCCCEEEeccc
Confidence 99999998744
|
|
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.37 E-value=2.9 Score=38.09 Aligned_cols=95 Identities=20% Similarity=0.171 Sum_probs=55.3
Q ss_pred HHHHHHHHhc--CCcEEEEEe---cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc---CCCc
Q 018919 194 EDVKWLQTIT--KLPILVKGV---LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIP 261 (349)
Q Consensus 194 ~~i~~i~~~~--~~pv~vK~v---~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ip 261 (349)
..|+++++.. ..|+....- ..+.. +..+...|+|+|.+.-+|... .....+.+..+.++++ .+..
T Consensus 40 ~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~---~~~a~e~l~~v~~av~~~~~~~~ 116 (235)
T PF04476_consen 40 WVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGCKD---YDEAIEALEAVVRAVKDFDPDKK 116 (235)
T ss_pred HHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCCCC---HHHHHHHHHHHHHHHhhhCCCcE
Confidence 4455666555 378876542 22322 344567899999997654422 1223455555544442 2445
Q ss_pred EEEecCC-------CCHHHHHHHHH-hCCCEEEEchHH
Q 018919 262 VFLDGGV-------RRGTDVFKALA-LGASGIFIGRPV 291 (349)
Q Consensus 262 via~GGI-------~~~~dv~kal~-~GA~~V~ig~~~ 291 (349)
+++.+=- -++.++.+..+ +|+++||+-|+.
T Consensus 117 vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~ 154 (235)
T PF04476_consen 117 VVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTAD 154 (235)
T ss_pred EEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 5555422 24567776654 899999998854
|
|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.042 Score=47.91 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=68.9
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCC-CCchh---HHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPR-LGRRE---ADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILV 209 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~-~g~r~---~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v 209 (349)
+.....+.++++.++|= .+.+|+|.-. .+..+ +-+.+.+ -|+|+-.. ....++..++ .++.-+-
T Consensus 29 ~I~~l~~~v~~~~~~gK-~vfVHiDli~Gl~~D~~~i~~L~~~~-~~dGIIST---------k~~~i~~Ak~-~gl~tIq 96 (175)
T PF04309_consen 29 DIGNLKDIVKRLKAAGK-KVFVHIDLIEGLSRDEAGIEYLKEYG-KPDGIIST---------KSNLIKRAKK-LGLLTIQ 96 (175)
T ss_dssp ECCCHHHHHHHHHHTT--EEEEECCGEETB-SSHHHHHHHHHTT---SEEEES---------SHHHHHHHHH-TT-EEEE
T ss_pred cHHHHHHHHHHHHHcCC-EEEEEehhcCCCCCCHHHHHHHHHcC-CCcEEEeC---------CHHHHHHHHH-cCCEEEE
Confidence 44556778888888874 4467887421 00000 1111100 01111000 0234555554 3555444
Q ss_pred EEe----cCHHH-HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCE
Q 018919 210 KGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 284 (349)
Q Consensus 210 K~v----~~~~~-a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~ 284 (349)
+.. .+.+. .+.+.+..+|+|-+- .+- ....+.++.+.+ ++|||+.|=|++.+|+.++|+.||++
T Consensus 97 RiFliDS~al~~~~~~i~~~~PD~vEil-------Pg~--~p~vi~~i~~~~--~~PiIAGGLI~~~e~v~~al~aGa~a 165 (175)
T PF04309_consen 97 RIFLIDSSALETGIKQIEQSKPDAVEIL-------PGV--MPKVIKKIREET--NIPIIAGGLIRTKEDVEEALKAGADA 165 (175)
T ss_dssp EEE-SSHHHHHHHHHHHHHHT-SEEEEE-------SCC--HHHHHCCCCCCC--SS-EEEESS--SHHHHHHHCCTTCEE
T ss_pred EeeeecHHHHHHHHHHHhhcCCCEEEEc-------hHH--HHHHHHHHHHhc--CCCEEeecccCCHHHHHHHHHcCCEE
Confidence 442 22333 344556778887762 111 112333333333 69999999999999999999999999
Q ss_pred EEEchHHHH
Q 018919 285 IFIGRPVVY 293 (349)
Q Consensus 285 V~ig~~~l~ 293 (349)
|.-..+-+|
T Consensus 166 VSTS~~~LW 174 (175)
T PF04309_consen 166 VSTSNKELW 174 (175)
T ss_dssp EEE--HHHC
T ss_pred EEcCChHhc
Confidence 998877665
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.7 Score=41.90 Aligned_cols=84 Identities=23% Similarity=0.256 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCC-Cch-HHHHHHHHHhcCCcEEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL-GKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~-~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
+.+...+.++.+++.|++.+.++...... |....... ..... +.+ ++..+++|+.+++||++-+
T Consensus 234 ~~eea~~ia~~Le~~Gvd~iev~~g~~~~-------------~~~~~~~~-~~~~~~~~~~~~~~~~ik~~v~iPVi~~G 299 (338)
T cd04733 234 TEEDALEVVEALEEAGVDLVELSGGTYES-------------PAMAGAKK-ESTIAREAYFLEFAEKIRKVTKTPLMVTG 299 (338)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCC-------------cccccccc-CCccccchhhHHHHHHHHHHcCCCEEEeC
Confidence 55667788899999999999887653210 00000000 00011 223 5778899999999998766
Q ss_pred e-cCHHHHHHHHHcC-CCEEEE
Q 018919 212 V-LTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 212 v-~~~~~a~~a~~~G-~d~I~v 231 (349)
. .++++++.+++.| +|.|-+
T Consensus 300 ~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 300 GFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred CCCCHHHHHHHHHcCCCCeeee
Confidence 4 5899999999887 898876
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=93.28 E-value=1.7 Score=42.05 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHcC-CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE-
Q 018919 135 RNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG- 211 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G-~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~- 211 (349)
.+...++++.++++| ++.+.|+...... .+ ......+. . ...+.+ |+.++++++.+++||++-+
T Consensus 227 ~~e~~~~~~~l~~~G~vd~i~vs~g~~~~-~~----~~~~~~~~-----~---~~~~~~~~~~~~~ik~~~~ipvi~~G~ 293 (343)
T cd04734 227 PDEALEIAARLAAEGLIDYVNVSAGSYYT-LL----GLAHVVPS-----M---GMPPGPFLPLAARIKQAVDLPVFHAGR 293 (343)
T ss_pred HHHHHHHHHHHHhcCCCCEEEeCCCCCCc-cc----ccccccCC-----C---CCCcchhHHHHHHHHHHcCCCEEeeCC
Confidence 456678889999998 8998876543210 00 00000010 0 012233 7888999999999988766
Q ss_pred ecCHHHHHHHHHcC-CCEEEE
Q 018919 212 VLTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 212 v~~~~~a~~a~~~G-~d~I~v 231 (349)
+.++++++.+++.| +|+|.+
T Consensus 294 i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 294 IRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred CCCHHHHHHHHHcCCCCeeee
Confidence 57899999999866 999977
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.25 E-value=1.2 Score=42.78 Aligned_cols=99 Identities=18% Similarity=0.156 Sum_probs=62.6
Q ss_pred CCchHHHHHHHHHhcC-CcEEEEEe--c----CHHHHHHHHH-cCCCEEEEecCCCC--CCCCchhhH----HHHHHHHH
Q 018919 189 LGKMDEDVKWLQTITK-LPILVKGV--L----TAEDARIAVQ-AGAAGIIVSNHGAR--QLDYVPATI----MALEEVVK 254 (349)
Q Consensus 189 ~~~~~~~i~~i~~~~~-~pv~vK~v--~----~~~~a~~a~~-~G~d~I~v~~~gg~--~~~~~~~~~----~~l~~i~~ 254 (349)
+++.++.++.+|+..+ .|+++-.- . +++++..+.+ .++|++-+.-.... ....+...+ +.+..+++
T Consensus 96 ~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~ 175 (326)
T cd02811 96 DPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVK 175 (326)
T ss_pred ChhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 4555677888888775 88776442 1 5666665554 88999988421110 011122233 55666666
Q ss_pred HhcCCCcEEEe--cCCCCHHHHHHHHHhCCCEEEEch
Q 018919 255 ATQGRIPVFLD--GGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 255 ~~~~~ipvia~--GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+ ++||++= |--.+.+++.++...|+|++.++.
T Consensus 176 ~~--~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 176 AL--SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred hc--CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 65 7899983 333677778777779999999864
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=3.7 Score=37.87 Aligned_cols=68 Identities=16% Similarity=0.079 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecC-----
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLT----- 214 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~----- 214 (349)
+-+..+++.|++-|++.-+-... | ..|. ...++.+++..++||.+-+.+.
T Consensus 12 ~~a~~A~~~GAdRiELc~~L~~G---------------G---------lTPS-~g~i~~~~~~~~ipv~vMIRPR~gdF~ 66 (248)
T PRK11572 12 ECALTAQQAGADRIELCAAPKEG---------------G---------LTPS-LGVLKSVRERVTIPVHPIIRPRGGDFC 66 (248)
T ss_pred HHHHHHHHcCCCEEEEccCcCCC---------------C---------cCCC-HHHHHHHHHhcCCCeEEEEecCCCCCC
Confidence 34667889999999985443211 1 1222 3567777888899998876532
Q ss_pred ---------HHHHHHHHHcCCCEEEEe
Q 018919 215 ---------AEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 215 ---------~~~a~~a~~~G~d~I~v~ 232 (349)
.++++.+.++|+|+|++.
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G 93 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTG 93 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 256888999999999984
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=93.19 E-value=7.7 Score=38.35 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=46.6
Q ss_pred ceeEcCeecCcceeeccccccccc--CC-hhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHH
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMA--HP-EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVV 138 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~--~~-~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~ 138 (349)
..+|.++++++-|+.|||+...-. .| +.....-+.-++.| .+++++....+.+ ....+ ....+|.....+.+
T Consensus 15 P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~--g~~~~--~~~gi~~d~~i~~~ 89 (391)
T PLN02411 15 PYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPT--APGFP--HVPGIYSDEQVEAW 89 (391)
T ss_pred CeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcc--cCcCC--CCCccCCHHHHHHH
Confidence 577888999999999999643211 11 12234333333445 6666554322211 01111 11123322222345
Q ss_pred HHHHHHHHHcCCCEEEEecCC
Q 018919 139 AQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~ 159 (349)
.++++.+.+.|++.+ +-+.+
T Consensus 90 ~~l~~avH~~G~~i~-~QL~H 109 (391)
T PLN02411 90 KKVVDAVHAKGSIIF-CQLWH 109 (391)
T ss_pred HHHHHHHHhcCCEEE-EeccC
Confidence 667777778888763 33433
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.99 E-value=1.2 Score=43.78 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 245 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 245 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+|+.+.++++.. ++||++- ||.+.+|+.+++.+|+|+|.|..
T Consensus 241 tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 241 TWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred CHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEcC
Confidence 567787787766 6898876 68999999999999999999863
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.1 Score=43.00 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=49.4
Q ss_pred HHHHHHHH--cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 216 EDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 216 ~~a~~a~~--~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+-+..+.+ +|+|.|++...-|+ ....++.+.++++.++ +++| ..|.|-|++-+...+.+|||+|=||
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P-~~~v-IaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGY----SEHFVQFVAKAREAWP-DKTI-CAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHHhCC-CCcE-EEecccCHHHHHHHHHcCCCEEEEc
Confidence 55677777 59999999753231 2335678888888764 5664 4688999999988888999998654
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=4.3 Score=41.00 Aligned_cols=187 Identities=18% Similarity=0.169 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHhCCcccccccc--CCCcchHHHH-HHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccc
Q 018919 5 TNVMEYEAIAKEKLPKMVFDYYA--SGAEDQWTLQ-ENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (349)
Q Consensus 5 ~~~~d~~~~a~~~l~~~~~~y~~--~g~~~~~t~~-~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~ 81 (349)
.+.+|+...|..- .+.-|..+. |||.=...++ .+-+.|++++..-+.+.+ ..+++=+.|..+ .+.
T Consensus 32 ~~t~d~l~ia~~l-d~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~n---t~lqmLlRG~n~--------vgy 99 (468)
T PRK12581 32 LSIEDMLPVLTIL-DKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPN---TRLQMLLRGQNL--------LGY 99 (468)
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCC---Cceeeeeccccc--------cCc
Confidence 4556666655432 222333332 3443222222 345567777665555432 222222223221 111
Q ss_pred ccccCChhhHHHHHHHHHcCCeEEecCCCCC-CHH-------HHHhhCCCceEEEE---ee---cCChhHHHHHHHHHHH
Q 018919 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTS-SVE-------EVASTGPGIRFFQL---YV---YKDRNVVAQLVRRAER 147 (349)
Q Consensus 82 ~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~-~~e-------~i~~~~~~~~~~Ql---~~---~~~~~~~~~~~~~~~~ 147 (349)
. -+..+....+.+.|.+.|+..+ ..+... .++ .+++... .+|+ |. ..+.+...+.++++++
T Consensus 100 ~-~ypddvv~~fv~~a~~~Gidi~-Rifd~lnd~~n~~~ai~~ak~~G~---~~~~~i~yt~sp~~t~~y~~~~a~~l~~ 174 (468)
T PRK12581 100 R-HYADDIVDKFISLSAQNGIDVF-RIFDALNDPRNIQQALRAVKKTGK---EAQLCIAYTTSPVHTLNYYLSLVKELVE 174 (468)
T ss_pred c-CCcchHHHHHHHHHHHCCCCEE-EEcccCCCHHHHHHHHHHHHHcCC---EEEEEEEEEeCCcCcHHHHHHHHHHHHH
Confidence 1 1122445678999999998864 222222 122 2222211 1222 21 2245667888999999
Q ss_pred cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec----CHHHHHHHH
Q 018919 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL----TAEDARIAV 222 (349)
Q Consensus 148 ~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~----~~~~a~~a~ 222 (349)
+|++.|.| .|+. |...|.. .+.++.+++..++||.+-.=. .......|+
T Consensus 175 ~Gad~I~I-kDta-------------------------G~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAi 228 (468)
T PRK12581 175 MGADSICI-KDMA-------------------------GILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAV 228 (468)
T ss_pred cCCCEEEE-CCCC-------------------------CCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHH
Confidence 99998876 3432 1234554 577999988778888766532 346678899
Q ss_pred HcCCCEEEEecC
Q 018919 223 QAGAAGIIVSNH 234 (349)
Q Consensus 223 ~~G~d~I~v~~~ 234 (349)
++|||.|..+-.
T Consensus 229 eAGad~vD~ai~ 240 (468)
T PRK12581 229 EAGADRIDTALS 240 (468)
T ss_pred HcCCCEEEeecc
Confidence 999999998754
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=92.93 E-value=3.1 Score=36.84 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.++++++..+ +||++=+-.+.+++..+.++|+|+|.+.
T Consensus 148 ~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 148 LEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVV 188 (212)
T ss_pred HHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 688999988876 9998877678999999999999999985
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=92.92 E-value=7.4 Score=35.72 Aligned_cols=172 Identities=22% Similarity=0.207 Sum_probs=95.8
Q ss_pred hHHHHHHHHHcCCeEEecCC------------CCCCHHHHHhh-------CCCceEEEE---eecCChhHHHHHHHHHHH
Q 018919 90 EYATARAASAAGTIMTLSSW------------STSSVEEVAST-------GPGIRFFQL---YVYKDRNVVAQLVRRAER 147 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~------------~~~~~e~i~~~-------~~~~~~~Ql---~~~~~~~~~~~~~~~~~~ 147 (349)
|...|+.+.+.|...+..+. ...+++|+... ..-|..+-+ |+ .++..+.+.++++++
T Consensus 18 D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG-~~~~~v~~tv~~~~~ 96 (238)
T PF13714_consen 18 DALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYG-NDPENVARTVRELER 96 (238)
T ss_dssp SHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSS-SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccC-chhHHHHHHHHHHHH
Confidence 34788999999988765322 11345554322 222333332 32 237778899999999
Q ss_pred cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc---CCcEEEEEe-cC-----HH-
Q 018919 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT---KLPILVKGV-LT-----AE- 216 (349)
Q Consensus 148 ~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~---~~pv~vK~v-~~-----~~- 216 (349)
+|+.++.|. |. ..+ ..-+ .+.+.+. .+.|+..++.. +.-|+...= .. .+
T Consensus 97 aG~agi~IE-Dq-~~~---------~~~~---------~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~de 156 (238)
T PF13714_consen 97 AGAAGINIE-DQ-RCG---------HGGK---------QLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDE 156 (238)
T ss_dssp CT-SEEEEE-SB-STT---------TSTT----------B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHH
T ss_pred cCCcEEEee-cc-ccC---------CCCC---------ceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHH
Confidence 999998663 32 000 0000 0122222 45566665543 322333321 11 12
Q ss_pred ---HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 217 ---DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 217 ---~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
-++...++|||.|.+- ++.+.+.+.++.+.+ +.|+.+.-+ ...-++.+.-.+|.+.|..|..++.
T Consensus 157 aI~R~~aY~eAGAD~ifi~---------~~~~~~~i~~~~~~~--~~Pl~v~~~-~~~~~~~eL~~lGv~~v~~~~~~~~ 224 (238)
T PF13714_consen 157 AIERAKAYAEAGADMIFIP---------GLQSEEEIERIVKAV--DGPLNVNPG-PGTLSAEELAELGVKRVSYGNSLLR 224 (238)
T ss_dssp HHHHHHHHHHTT-SEEEET---------TSSSHHHHHHHHHHH--SSEEEEETT-SSSS-HHHHHHTTESEEEETSHHHH
T ss_pred HHHHHHHHHHcCCCEEEeC---------CCCCHHHHHHHHHhc--CCCEEEEcC-CCCCCHHHHHHCCCcEEEEcHHHHH
Confidence 2566789999999882 233456688888888 577776664 2225666666799999999998876
Q ss_pred H
Q 018919 294 S 294 (349)
Q Consensus 294 ~ 294 (349)
+
T Consensus 225 a 225 (238)
T PF13714_consen 225 A 225 (238)
T ss_dssp H
T ss_pred H
Confidence 4
|
... |
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=92.92 E-value=6.9 Score=36.40 Aligned_cols=133 Identities=23% Similarity=0.295 Sum_probs=73.3
Q ss_pred hHHHHHHHHHcCCeEEe-cCC-----------CCCCHHHHH-------hhCCCceE-EEE-eec--CChhHHHHHHHHH-
Q 018919 90 EYATARAASAAGTIMTL-SSW-----------STSSVEEVA-------STGPGIRF-FQL-YVY--KDRNVVAQLVRRA- 145 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~-~~~-----------~~~~~e~i~-------~~~~~~~~-~Ql-~~~--~~~~~~~~~~~~~- 145 (349)
|..+|+.+.++|+..++ +.. .+.+++++. +..+..+. .-+ |.. .+++...+.+.++
T Consensus 25 D~~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~nA~rl~ 104 (261)
T PF02548_consen 25 DYPSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRNAGRLM 104 (261)
T ss_dssp SHHHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHHHHHHH
Confidence 56899999999999875 311 124566643 33343322 222 111 3445444444444
Q ss_pred HHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec------------
Q 018919 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL------------ 213 (349)
Q Consensus 146 ~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~------------ 213 (349)
+++|++++-+--.. +..+.|+.|.+. ++||+--+-.
T Consensus 105 ke~GadaVKlEGg~-------------------------------~~~~~i~~l~~~-GIPV~gHiGLtPQ~~~~~GGyr 152 (261)
T PF02548_consen 105 KEAGADAVKLEGGA-------------------------------EIAETIKALVDA-GIPVMGHIGLTPQSVHQLGGYR 152 (261)
T ss_dssp HTTT-SEEEEEBSG-------------------------------GGHHHHHHHHHT-T--EEEEEES-GGGHHHHTSS-
T ss_pred HhcCCCEEEeccch-------------------------------hHHHHHHHHHHC-CCcEEEEecCchhheeccCCce
Confidence 55999997653210 114668888764 8999865521
Q ss_pred ----C-------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 214 ----T-------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 214 ----~-------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
+ .++|+.+.++||-+|++-.- +.+.-..|.+.+ ++|+|.-|
T Consensus 153 ~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~v----------p~~la~~It~~l--~IPtIGIG 204 (261)
T PF02548_consen 153 VQGKTAEEAEKLLEDAKALEEAGAFAIVLECV----------PAELAKAITEAL--SIPTIGIG 204 (261)
T ss_dssp -CSTSHHHHHHHHHHHHHHHHHT-SEEEEESB----------BHHHHHHHHHHS--SS-EEEES
T ss_pred EEecCHHHHHHHHHHHHHHHHcCccEEeeecC----------HHHHHHHHHHhC--CCCEEecC
Confidence 1 25688899999999998432 234455666777 89999666
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.86 Score=41.88 Aligned_cols=39 Identities=36% Similarity=0.424 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.++++|+..+.||.+.+ +.+.++++.+.++ ||++++.
T Consensus 176 ~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 176 KELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVG 215 (242)
T ss_pred HHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEEC
Confidence 5779999988899999877 5668899999999 9999995
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.3 Score=44.40 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=52.9
Q ss_pred HHH-HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 218 ARI-AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~-a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
++. ....++|+|+++++ -.+.++..+.|..++++. +.||++.+|+. .+.+.+.|.. ||++.+|+.+=
T Consensus 169 v~dtver~~aDaVI~tG~----~TG~~~d~~el~~a~~~~--~~pvlvGSGv~-~eN~~~~l~~-adG~IvgT~lK 236 (263)
T COG0434 169 VKDTVERGLADAVIVTGS----RTGSPPDLEELKLAKEAV--DTPVLVGSGVN-PENIEELLKI-ADGVIVGTSLK 236 (263)
T ss_pred HHHHHHccCCCEEEEecc----cCCCCCCHHHHHHHHhcc--CCCEEEecCCC-HHHHHHHHHH-cCceEEEEEEc
Confidence 444 44577999999864 235677889998888887 59999999975 5788788887 99999999764
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=92.81 E-value=3.1 Score=37.55 Aligned_cols=116 Identities=19% Similarity=0.151 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHcCCeEEe-cCCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchh
Q 018919 89 GEYATARAASAAGTIMTL-SSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (349)
Q Consensus 89 ~~~~la~aa~~~G~~~~~-~~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~ 166 (349)
.....++.+.++|..++. +.. .+.+.+..... +..++ ....+ .+.++++.+.|++.+.++-..+ +
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~--~~~~~~~~~~~~~i~~i--~~v~~----~~~~~~~~~~gad~i~~~~~~~--~--- 134 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFG--PPAEVVERLKAAGIKVI--PTVTS----VEEARKAEAAGADALVAQGAEA--G--- 134 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCC--CCHHHHHHHHHcCCEEE--EeCCC----HHHHHHHHHcCCCEEEEeCcCC--C---
Confidence 355788899999988764 433 23222222221 21111 11112 2445667778999886532110 0
Q ss_pred HHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 167 ADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 167 ~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
+...+ .+...++.++++++.+++||++-+ +.+++++..+.+.|+|+|.++.
T Consensus 135 -----G~~~~-----------~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS 186 (236)
T cd04730 135 -----GHRGT-----------FDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGT 186 (236)
T ss_pred -----CCCCc-----------cccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEch
Confidence 00000 011226789999988899987665 4567999999999999999953
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.74 E-value=3 Score=38.07 Aligned_cols=87 Identities=21% Similarity=0.310 Sum_probs=50.8
Q ss_pred cCHHHHHHHHHcCCCEEEEe------------------cCCCCCCCCch---hhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 213 LTAEDARIAVQAGAAGIIVS------------------NHGARQLDYVP---ATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~------------------~~gg~~~~~~~---~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
..+..++++++.|+..+.+- .+|-|.+.... +.+..+.+-.+..++++.+++-=-=+.+
T Consensus 77 g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~g 156 (255)
T COG3836 77 GDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAG 156 (255)
T ss_pred CCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHH
Confidence 45677888888888887763 11333222111 1122233322333346666666555777
Q ss_pred HHHHHHHH--hCCCEEEEchHHHH-HHhhcC
Q 018919 272 TDVFKALA--LGASGIFIGRPVVY-SLAAEG 299 (349)
Q Consensus 272 ~dv~kal~--~GA~~V~ig~~~l~-~~~~~G 299 (349)
-|.+.+++ -|.|+|++|-+=+. .++.-|
T Consensus 157 l~nLDaIaaveGVDgvFiGPaDLaas~G~~g 187 (255)
T COG3836 157 LDNLDAIAAVEGVDGVFIGPADLAASLGHLG 187 (255)
T ss_pred HHHHHHHHccCCCCeEEECHHHHHHHcCCCC
Confidence 88888888 49999999987543 344333
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.51 Score=45.64 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=62.8
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc---h-HHHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK---M-DEDVKW 198 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~---~-~~~i~~ 198 (349)
.|.++.|.+.-+.+.+.+.++.++++|++++.+ +++-. . + +. +..|. .. ....++-.+. . .+.+++
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l-~NT~~-~-~--~~---~~~~~-~~-~~~GGlSG~~i~p~al~~v~~ 280 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIA-TNTTV-S-R--SL---VQGPK-NS-DETGGLSGKPLQDKSTEIIRR 280 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEE-ECCCC-c-c--cc---ccCcc-cc-CCCCcccCHHHHHHHHHHHHH
Confidence 467888876545456788899999999999876 33321 0 0 00 00010 00 0011111121 1 456777
Q ss_pred HHHhc--CCcEE-EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 199 LQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 199 i~~~~--~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+++.. ++||+ +.++.+.+||...+.+||+.|.+.
T Consensus 281 ~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ 317 (335)
T TIGR01036 281 LYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIY 317 (335)
T ss_pred HHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhh
Confidence 77766 58876 677899999999999999999874
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.61 E-value=4.7 Score=38.57 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=48.2
Q ss_pred CCc-EEEecCCCCHHHHH----HHHHhCCC--EEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 018919 259 RIP-VFLDGGVRRGTDVF----KALALGAS--GIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 331 (349)
Q Consensus 259 ~ip-via~GGI~~~~dv~----kal~~GA~--~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~ 331 (349)
++| |+.++|+.. +... -|...||+ +|.+||+.-+ +++..++..=.+..+.+|...|..+|++|+.
T Consensus 242 ~~P~i~LSaGV~~-~~F~~~l~~A~~aGa~fnGvL~GRAtW~-------~~v~~~~~~g~~a~~~wL~t~g~~ni~~Ln~ 313 (329)
T PRK04161 242 HLPYIYLSAGVSA-KLFQETLVFAAEAGAQFNGVLCGRATWA-------GSVPVYITEGEEAARKWLCTEGFQNIDELNR 313 (329)
T ss_pred CCCEEEEcCCCCH-HHHHHHHHHHHhcCCCcccEEeehhhhh-------hhhhhhhcCCHHHHHHHHHHHhHHHHHHHHH
Confidence 566 667888775 3333 34458998 9999998644 2333333444567788888899999999986
Q ss_pred cceecccC
Q 018919 332 DHIVTEWD 339 (349)
Q Consensus 332 ~~l~~~~~ 339 (349)
..-.+..+
T Consensus 314 vl~~ta~~ 321 (329)
T PRK04161 314 VLEETASP 321 (329)
T ss_pred HHHccCCc
Confidence 54444333
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=92.56 E-value=5.1 Score=38.77 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=85.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~v 212 (349)
+.+...+.++.+.++|++.|+++-.....| ..|. .+.+. .+ .++.++.+++.. +.++.+-.+
T Consensus 23 ~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~-------~s~~----~g~~~----~~--~~e~i~~~~~~~~~~~~~~ll~ 85 (337)
T PRK08195 23 TLEQVRAIARALDAAGVPVIEVTHGDGLGG-------SSFN----YGFGA----HT--DEEYIEAAAEVVKQAKIAALLL 85 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCC-------cccc----CCCCC----CC--HHHHHHHHHHhCCCCEEEEEec
Confidence 456777889999999999999864221000 0000 00000 01 167787776554 344443222
Q ss_pred ---cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCC-cEEEecCCCCHHHHHH----HHHhCCCE
Q 018919 213 ---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFK----ALALGASG 284 (349)
Q Consensus 213 ---~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i-pvia~GGI~~~~dv~k----al~~GA~~ 284 (349)
.+.++.+.+.+.|+|.|.+..|-.. .....+.+..+++ .+..+ --+.+.+..+++.+++ +..+||+.
T Consensus 86 pg~~~~~dl~~a~~~gvd~iri~~~~~e----~~~~~~~i~~ak~-~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~ 160 (337)
T PRK08195 86 PGIGTVDDLKMAYDAGVRVVRVATHCTE----ADVSEQHIGLARE-LGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQC 160 (337)
T ss_pred cCcccHHHHHHHHHcCCCEEEEEEecch----HHHHHHHHHHHHH-CCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCE
Confidence 3789999999999999988754211 1112233333322 22121 1233445667766654 33479999
Q ss_pred EEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 285 IFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 285 V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
|.+.-.+ +.--++.+.+++..+++++
T Consensus 161 i~i~DT~----G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 161 VYVVDSA----GALLPEDVRDRVRALRAAL 186 (337)
T ss_pred EEeCCCC----CCCCHHHHHHHHHHHHHhc
Confidence 8876532 1112455666666666655
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.8 Score=42.15 Aligned_cols=84 Identities=17% Similarity=0.099 Sum_probs=56.2
Q ss_pred CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC----CCCCchhhHHHH----HHHHHHhcCCCcEEEecCCCCH---H
Q 018919 204 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMAL----EEVVKATQGRIPVFLDGGVRRG---T 272 (349)
Q Consensus 204 ~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~----~~~~~~~~~~~l----~~i~~~~~~~ipvia~GGI~~~---~ 272 (349)
+-|+.+-++-+.-.|+.+.++|+|+|.+++.+.. ..|.+.-+++.+ +.+.+.. ...||++|.---++ +
T Consensus 11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~-~~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA-PLALIVADLPFGAYGAPT 89 (240)
T ss_pred CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC-CCCCEEEeCCCCCCcCHH
Confidence 5688877777888899999999999999875331 123333344333 3333333 24799998755544 4
Q ss_pred H----HHHHHHhCCCEEEEc
Q 018919 273 D----VFKALALGASGIFIG 288 (349)
Q Consensus 273 d----v~kal~~GA~~V~ig 288 (349)
+ +.+++.+||++|-|-
T Consensus 90 ~~~~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEc
Confidence 5 445677999999994
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.91 Score=43.82 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH-HHh-cCCcEEEEEecC
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL-QTI-TKLPILVKGVLT 214 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i-~~~-~~~pv~vK~v~~ 214 (349)
.....++.+.+.|++++.++.+. ++.. +.. -++|+++|.-.+
T Consensus 92 dp~~~i~~a~~~g~dAv~~~~G~------------------------------------l~~~~~~~~~~iplIlkln~~ 135 (348)
T PRK09250 92 DPENIVKLAIEAGCNAVASTLGV------------------------------------LEAVARKYAHKIPFILKLNHN 135 (348)
T ss_pred CHHHHHHHHHhcCCCEEEeCHHH------------------------------------HHhccccccCCCCEEEEeCCC
Confidence 34567888889999999876532 1110 011 146777775310
Q ss_pred -------H------HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc-CCCcEEE-----ecCCCCHH---
Q 018919 215 -------A------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFL-----DGGVRRGT--- 272 (349)
Q Consensus 215 -------~------~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~-~~ipvia-----~GGI~~~~--- 272 (349)
+ ..++.|++.|||+|.++-.-|. +.....++.+.++.+.+. -.+|+++ .+.|.+..
T Consensus 136 t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs--~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~ 213 (348)
T PRK09250 136 ELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGS--EESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYH 213 (348)
T ss_pred CCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCC--HHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCccccc
Confidence 0 2367799999999998754331 111234555555555443 2688887 22333333
Q ss_pred ---HHH-----HHHHhCCCEEEEch
Q 018919 273 ---DVF-----KALALGASGIFIGR 289 (349)
Q Consensus 273 ---dv~-----kal~~GA~~V~ig~ 289 (349)
|++ -+.++|||.|=+--
T Consensus 214 ~~~d~Ia~AaRiaaELGADIVKv~y 238 (348)
T PRK09250 214 TAADLTGQANHLAATIGADIIKQKL 238 (348)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEecC
Confidence 233 34568999987654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 349 | ||||
| 1gox_A | 370 | Refined Structure Of Spinach Glycolate Oxidase At 2 | 1e-166 | ||
| 1gyl_A | 369 | Involvement Of Tyr24 And Trp108 In Substrate Bindin | 1e-166 | ||
| 1al7_A | 359 | Three-Dimensional Structures Of Glycolate Oxidase W | 1e-164 | ||
| 2cdh_0 | 226 | Architecture Of The Thermomyces Lanuginosus Fungal | 4e-98 | ||
| 2rdt_A | 387 | Crystal Structure Of Human Glycolate Oxidase (Go) I | 1e-96 | ||
| 2nzl_A | 392 | Crystal Structure Of Human Hydroxyacid Oxidase 1 Le | 2e-96 | ||
| 2w0u_A | 370 | Crystal Structure Of Human Glycolate Oxidase In Com | 2e-96 | ||
| 1tb3_A | 352 | Crystal Structure Analysis Of Recombinant Rat Kidne | 1e-74 | ||
| 3sgz_A | 352 | High Resolution Crystal Structure Of Rat Long Chain | 1e-72 | ||
| 2a7n_A | 380 | Crystal Structure Of The G81a Mutant Of The Active | 8e-67 | ||
| 1huv_A | 380 | Crystal Structure Of A Soluble Mutant Of The Membra | 2e-66 | ||
| 1kbj_A | 412 | Crystallographic Study Of The Recombinant Flavin-Bi | 9e-63 | ||
| 1fcb_A | 511 | Molecular Structure Of Flavocytochrome B2 At 2.4 An | 2e-62 | ||
| 1ltd_A | 506 | The 2.6 Angstroms Refined Structure Of The Escheric | 2e-62 | ||
| 1qcw_A | 410 | Flavocytochrome B2, Arg289lys Mutant Length = 410 | 2e-62 | ||
| 1ldc_A | 511 | X-Ray Structure Of Two Complexes Of The Y143f Flavo | 5e-62 | ||
| 1sze_A | 511 | L230a Mutant Flavocytochrome B2 With Benzoylformate | 7e-62 | ||
| 2oz0_A | 511 | Mechanistic And Structural Studies Of H373q Flavocy | 1e-61 | ||
| 1szf_A | 511 | A198g:l230a Mutant Flavocytochrome B2 With Pyruvate | 2e-61 | ||
| 2j6x_A | 374 | The Crystal Structure Of Lactate Oxidase Length = 3 | 2e-48 | ||
| 2du2_A | 374 | Crystal Structure Analysis Of The L-Lactate Oxidase | 4e-48 | ||
| 2nli_A | 368 | Crystal Structure Of The Complex Between L-Lactate | 5e-48 | ||
| 1p0k_A | 349 | Ipp:dmapp Isomerase Type Ii Apo Structure Length = | 6e-04 | ||
| 3ffs_A | 400 | The Crystal Structure Of Cryptosporidium Parvum Ino | 8e-04 |
| >pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370 | Back alignment and structure |
|
| >pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369 | Back alignment and structure |
|
| >pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359 | Back alignment and structure |
|
| >pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226 | Back alignment and structure |
|
| >pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387 | Back alignment and structure |
|
| >pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392 | Back alignment and structure |
|
| >pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370 | Back alignment and structure |
|
| >pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352 | Back alignment and structure |
|
| >pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352 | Back alignment and structure |
|
| >pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380 | Back alignment and structure |
|
| >pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380 | Back alignment and structure |
|
| >pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412 | Back alignment and structure |
|
| >pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511 | Back alignment and structure |
|
| >pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506 | Back alignment and structure |
|
| >pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410 | Back alignment and structure |
|
| >pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511 | Back alignment and structure |
|
| >pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511 | Back alignment and structure |
|
| >pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511 | Back alignment and structure |
|
| >pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511 | Back alignment and structure |
|
| >pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374 | Back alignment and structure |
|
| >pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374 | Back alignment and structure |
|
| >pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368 | Back alignment and structure |
|
| >pdb|1P0K|A Chain A, Ipp:dmapp Isomerase Type Ii Apo Structure Length = 349 | Back alignment and structure |
|
| >pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum Inosine-5'- Monophosphate Dehydrogenase Length = 400 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370 | Back alignment and structure |
|---|
Score = 606 bits (1565), Expect = 0.0
Identities = 307/368 (83%), Positives = 327/368 (88%), Gaps = 21/368 (5%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 63 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182
Query: 183 NFQGLDLGKMD---------------------EDVKWLQTITKLPILVKGVLTAEDARIA 221
NF+G+DLGKMD +DV WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 243 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 302
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 341
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 303 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 362
Query: 342 LPRPVPRL 349
R V RL
Sbjct: 363 SSRAVARL 370
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392 | Back alignment and structure |
|---|
Score = 571 bits (1473), Expect = 0.0
Identities = 191/374 (51%), Positives = 255/374 (68%), Gaps = 30/374 (8%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ + + +YE AK LPK ++DYY SGA D+ TL +N AFSR PR+L +V++ D
Sbjct: 24 LPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETD 83
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
++T+VLG ++SMPI + TAMQ+MAH +GE AT RA + GT M LSSW+TSS+EEVA
Sbjct: 84 LSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEA 143
Query: 121 GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179
GP +R+ QLY+YKDR V +LVR+AE+ G+KAI +TVDTP LG R D++NRF LPP L
Sbjct: 144 GPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQL 203
Query: 180 TLKNFQGLDLGKMD------------------------EDVKWLQTITKLPILVKGVLTA 215
+KNF+ L ED+KWL+ +T LPI+ KG+L
Sbjct: 204 RMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRG 263
Query: 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275
+DAR AV+ G GI+VSNHGARQLD VPATI L E+V+A +G++ VFLDGGVR+GTDV
Sbjct: 264 DDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVL 323
Query: 276 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335
KALALGA +F+GRP+V+ LA +GEKGV+ VLE+L+EEF LAMALSGC+++K I + +
Sbjct: 324 KALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 383
Query: 336 TEWDASLPRPVPRL 349
P V ++
Sbjct: 384 KN-----PLAVSKI 392
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352 | Back alignment and structure |
|---|
Score = 564 bits (1457), Expect = 0.0
Identities = 156/349 (44%), Positives = 221/349 (63%), Gaps = 15/349 (4%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP- 122
T+ G +IS PI I+PTA +A P+GE +TARAA A +SS+++ S+E++ + P
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G R+FQLY+ D + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L +
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKA 181
Query: 183 NFQGLDLGK---------MD-----EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAG 228
+ L K D+ LQ+IT+LPI++KG+LT EDA +A++ G
Sbjct: 182 ALRALKEEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQG 241
Query: 229 IIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288
I+VSNHG RQLD V A+I AL EVV A +G+I V++DGGVR GTDV KALALGA IF+G
Sbjct: 242 IVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLG 301
Query: 289 RPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 337
RP+++ LA +GE GV+ VL++L E M LSGC+S+ EI+ D I
Sbjct: 302 RPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQFS 350
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368 | Back alignment and structure |
|---|
Score = 560 bits (1445), Expect = 0.0
Identities = 117/351 (33%), Positives = 186/351 (52%), Gaps = 16/351 (4%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
++ N + E A + +P F+Y A + D+WT + N A+ L PR+ DV D +
Sbjct: 12 DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTS 71
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T +LG KI P ++AP A +AH E TARA S GTIM++S++S ++ EE++
Sbjct: 72 TEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLN 131
Query: 123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 181
G R+FQ+Y+ KD ++ A+ G AI LT D+ G R+ D+KN+F P + +
Sbjct: 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPI 191
Query: 182 KNFQGLDLGK----------MD-----EDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 226
+ D++ + + LP+ VKG+ EDA +A++ GA
Sbjct: 192 VQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRGA 251
Query: 227 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286
+GI VSNHGARQL P + L + + R+P+ D GVRRG V KALA GA +
Sbjct: 252 SGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVA 311
Query: 287 IGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 337
+GRPV++ LA G +G VL+ +++ M L+G ++++++ +
Sbjct: 312 LGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDN 362
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380 | Back alignment and structure |
|---|
Score = 551 bits (1423), Expect = 0.0
Identities = 144/367 (39%), Positives = 213/367 (58%), Gaps = 27/367 (7%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+ NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ +
Sbjct: 4 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQ 63
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
VLG + SMP++I PT + P+G+ A ARAA+ AG LS+ S S+E++A
Sbjct: 64 AEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCD 123
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G +FQLYV R + +V +A G+ + LT D G RE D+ NRF +PPFLTLK
Sbjct: 124 GDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLK 182
Query: 183 NFQGLDLGKMD---------------------EDVKWLQTITKLPILVKGVLTAEDARIA 221
NF+G+DLGKMD E ++WL+ + +LVKG+L+AEDA
Sbjct: 183 NFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 242
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
+ GA G+I+SNHG RQLD + + L + V PV +D G RRG+D+ KALALG
Sbjct: 243 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAK--TGKPVLIDSGFRRGSDIVKALALG 300
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 341
A + +GR +Y LAA GE GV VL +L+ + + +A GC + ++ D++ E
Sbjct: 301 AEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE---G 357
Query: 342 LPRPVPR 348
+ P
Sbjct: 358 VTNTAPV 364
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 | Back alignment and structure |
|---|
Score = 539 bits (1390), Expect = 0.0
Identities = 133/374 (35%), Positives = 212/374 (56%), Gaps = 26/374 (6%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP---EGEYATARAASAAGTIMTLSSWSTSSVEEV 117
++T +LG + +P ++ TA+ K+ +P E + A +S+ ++ S EE+
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 118 ASTGPG---IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
P I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 175 LPPFLT-LKNFQGLDLGK---------MD-----EDVKWLQTITKLPILVKGVLTAEDAR 219
++ + +D +D++ L+ TKLPI++KGV ED
Sbjct: 299 NTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVI 358
Query: 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-----GRIPVFLDGGVRRGTDV 274
A + G +G+++SNHG RQLD+ A I L E + + ++ VF+DGGVRRGTDV
Sbjct: 359 KAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDV 418
Query: 275 FKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334
KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E+ D +
Sbjct: 419 LKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 478
Query: 335 VTEWDASLPRPVPR 348
+ VP
Sbjct: 479 DLSTLKARTVGVPN 492
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365 | Back alignment and structure |
|---|
Score = 297 bits (763), Expect = 1e-99
Identities = 56/358 (15%), Positives = 118/358 (32%), Gaps = 50/358 (13%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDM 61
+ ++ + + + + D+ A D + N+F I L D+++ID+
Sbjct: 21 MASMTGGQQMGRGSMTNRKDDHI-KYALDY---RSPYNSFDDIELIHHSLPDYDLAEIDL 76
Query: 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG 121
+T G P I E A+ A G + S
Sbjct: 77 STHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGS------------- 123
Query: 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA-DIKNRFTLPPFLT 180
K+ + + V+++ A + +D P +A L +
Sbjct: 124 ------YSTALKNPDDTSYQVKKSRPHLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHIN 177
Query: 181 LKNFQGLDLGKMD-----EDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVS 232
L + G+ + + + +LP ++K V + + + A+ G + +S
Sbjct: 178 LMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDIS 237
Query: 233 NHGARQLDYVPA---------------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 277
G Y+ T L + ++ + GG+R D+ KA
Sbjct: 238 GRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNA-QPLMDKVEILASGGIRHPLDIIKA 296
Query: 278 LALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335
L LGA + + R ++ + V ++ +E+ L M C+++ E+ +
Sbjct: 297 LVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLIMCALNCQTIAELRNVDYL 354
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 | Back alignment and structure |
|---|
Score = 262 bits (672), Expect = 5e-86
Identities = 62/333 (18%), Positives = 125/333 (37%), Gaps = 46/333 (13%)
Query: 35 TLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEY 91
Q+ I F L + + ++D++T + S PI I T E
Sbjct: 17 IGQKRETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINK 76
Query: 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK 151
+ ARAAS AG + + S ++ + ++VR+ G
Sbjct: 77 SLARAASQAGIPLAVGSQMSALKDPSERLS-----------------YEIVRKENPNGLI 119
Query: 152 AIALTVDTPRLGRREA-DIKNRFTLP-----PFLTLKNFQGLDLGKMDEDVKWLQTITKL 205
L + +EA ++ L + + ++ + + +
Sbjct: 120 FANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSV 179
Query: 206 PILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLDYVP----------------ATI 246
P++VK V ++ A +AGAA + + +G + +T
Sbjct: 180 PVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTA 239
Query: 247 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 306
+L E+ + GG++ DV KA+ALGAS + + +L GE+G+
Sbjct: 240 ASLAEIRSE-FPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEE 298
Query: 307 LEMLREEFELAMALSGCRSLKEITRDHIVTEWD 339
++++ EE +L M + G R++ ++ + +V + +
Sbjct: 299 IQLILEELKLIMTVLGARTIADLQKAPLVIKGE 331
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 4e-72
Identities = 61/342 (17%), Positives = 118/342 (34%), Gaps = 39/342 (11%)
Query: 24 DYYASGAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TA 80
++ A + + + ++ + I S+I+ T +IS+P+M+ T
Sbjct: 10 EHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTG 69
Query: 81 MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE-EVASTGPGIRFFQLYVYKDRNVVA 139
+ A A G M + S + + E + +R + N+
Sbjct: 70 GRNELG-RINKIIAEVAEKFGIPMGVGSQRVAIEKAEARESFAIVRKVAPTIPIIANLGM 128
Query: 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL 199
+ + G K + + + +Q L E ++ +
Sbjct: 129 --PQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYAL----EKLRDI 182
Query: 200 QTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHG--------------------- 235
+PI+VK ++ E A++ G S G
Sbjct: 183 SKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAE 242
Query: 236 --ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293
LD+ T ++ EV + + GG+R G D KA+ALGA + PV+
Sbjct: 243 SAKNFLDWGVPTAASIMEVRYSVPD-SFLVGSGGIRSGLDAAKAIALGADIAGMALPVLK 301
Query: 294 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335
S A EG++ + + + E + AM L+G + + + + IV
Sbjct: 302 S-AIEGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIV 342
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 5e-58
Identities = 75/335 (22%), Positives = 114/335 (34%), Gaps = 53/335 (15%)
Query: 29 GAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86
E + Q+ R + L + +S++D+ T LG + P +I +
Sbjct: 14 CLEGEVAYQKTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENG 73
Query: 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIR--------FFQLYVYKDRNV- 137
A A AA A G M L S A +R L + + R
Sbjct: 74 ERINLALAEAAEALGVGMMLGSGRILLERPEALRSFRVRKVAPKALLIANLGLAQLRRYG 133
Query: 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVK 197
L+R E A+A V+ + + +F+GL +
Sbjct: 134 RDDLLRLVEMLEADALAFHVNPLQEAVQR-------------GDTDFRGL------VERL 174
Query: 198 WLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA---------- 244
P++VK V L+ E A A + V+ G V
Sbjct: 175 AELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHP 234
Query: 245 --------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296
T A+ EV + +P+ GGV GTD KALALGA + + RP++ A
Sbjct: 235 ELCEIGIPTARAILEV-REVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLR-PA 292
Query: 297 AEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 331
EG + V + EE A+ G R+ KE
Sbjct: 293 LEGAERVAAWIGDYLEELRTALFAIGARNPKEARG 327
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Length = 393 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 4e-07
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 196 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIV-----SNHGARQLDYVPAT-IM-- 247
+K +P++ GV A ++ GA GIIV +N A ++ AT I
Sbjct: 203 LKEFIGSLDVPVIAGGVNDYTTALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADV 262
Query: 248 --ALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRP 290
A + + T GR + + DG + DV KA+A GA + +G P
Sbjct: 263 AAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSP 308
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 8e-07
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 21/109 (19%)
Query: 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLD 240
+K +++ + ++V V+T E + ++ GA GI IV+ G Q
Sbjct: 174 RTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ-- 231
Query: 241 YVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 288
I A+E+ IP+ DGG+R D+ KALA+GAS + IG
Sbjct: 232 -----ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Length = 361 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 21/109 (19%)
Query: 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLD 240
+K +++ + ++V V+T E + ++ GA GI IV+ G Q
Sbjct: 135 RTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ-- 192
Query: 241 YVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 288
I A+E+ IP+ DGG+R D+ KALA+GAS + IG
Sbjct: 193 -----ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 3e-06
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 211 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270
+ +D + GA I + G D + L + + V +G
Sbjct: 135 DCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA--GCRVIAEGRYNS 192
Query: 271 GTDVFKALALGASGIFIG 288
+A+ GA + +G
Sbjct: 193 PALAAEAIRYGAWAVTVG 210
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Length = 234 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-05
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV 253
++ ++ +L+ + T ++ +A QAG + + G + +
Sbjct: 122 SFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYS-RQEAGPDVALIE 180
Query: 254 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288
+ I V +G + + K LG +GI +G
Sbjct: 181 ALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVG 215
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 22/110 (20%)
Query: 194 EDVKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQL 239
E +K + L ++ ++T E A + GA + IV+ G Q
Sbjct: 183 ELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQ- 241
Query: 240 DYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 288
I A+ +V +A I + DGG+R DV KA+A GA + IG
Sbjct: 242 ------ITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Length = 311 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 33/176 (18%), Positives = 53/176 (30%), Gaps = 41/176 (23%)
Query: 186 GLDLGKMDEDVKWLQTITKLPILVKGVLT--------AEDARIAVQAGAAGIIVSNHGA- 236
D ++ +K + T P+ VK L A I Q + N
Sbjct: 140 AYDFEATEKLLKEVFTFFTKPLGVK--LPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGN 197
Query: 237 --------RQLDYVPATIM-----------ALE---EVVKATQGRIPVFLDGGVRRGTDV 274
+ P AL + I + GG+ G D
Sbjct: 198 GLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDA 257
Query: 275 FKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 330
F+ L GA+ + IG + EG R++ +E E M G +S+ +
Sbjct: 258 FEHLLCGATMLQIGTALHK----EGPAIFDRII----KELEEIMNQKGYQSIADFH 305
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A Length = 366 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 22/110 (20%)
Query: 194 EDVKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQL 239
+ ++ L I+ V TAE AR ++AG + + IV+ G Q
Sbjct: 138 QRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQ- 196
Query: 240 DYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 288
I A+ + IPV DGG+R D+ KA+A GAS + +G
Sbjct: 197 ------ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 3e-05
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 192 MDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-----ARQLDYVPATI 246
+DE V +++T ++ + T E+A+ A + G I + HG QL Y
Sbjct: 106 LDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQND-F 164
Query: 247 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288
L++V+++ V +G V + + LG +G
Sbjct: 165 QFLKDVLQSVD--AKVIAEGNVITPDMYKRVMDLGVHCSVVG 204
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 22/108 (20%)
Query: 196 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 241
V ++ Q L ++ V+TA A+ + AG G+ V G Q
Sbjct: 287 VHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQ--- 343
Query: 242 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 288
A+ +V + + +P+ DGG++ V KALALGAS + +G
Sbjct: 344 ----GTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMG 387
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 4e-05
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 22/110 (20%)
Query: 194 EDVKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQL 239
E ++ + LP++ V T E ++AGA + +V+ G Q
Sbjct: 267 ETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQ- 325
Query: 240 DYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 288
+ A+ E + + +P+ DGG+R D+ KALA GA + +G
Sbjct: 326 ------LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVG 369
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 23/110 (20%)
Query: 194 EDVKWL-QTITKLPILVKGVLTAEDARIAVQAGA----AGI---------IVSNHGARQL 239
++ + + + + ++ V T E R AGA GI I + G
Sbjct: 138 NMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFG---- 193
Query: 240 DYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288
+ AL KA P+ DGG+R DV K++ GA+ + IG
Sbjct: 194 --TGGWQLAALRWCAKAA--SKPIIADGGIRTNGDVAKSIRFGATMVMIG 239
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 4e-05
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 22/110 (20%)
Query: 194 EDVKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQL 239
+ VK + L I+ V TAE + ++AGA + +V+ G Q
Sbjct: 286 DKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQ- 344
Query: 240 DYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 288
+ A+ + + IPV DGG++ D+ KALA GA + +G
Sbjct: 345 ------LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 6e-05
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 22/110 (20%)
Query: 194 EDVKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQL 239
+ + ++ + TAE AR AG + +V+ G Q
Sbjct: 263 RKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQ- 321
Query: 240 DYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 288
+ A+ + + + DGG++ D+ KALA G + + +G
Sbjct: 322 ------VTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLG 365
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 204 KLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYVPATIMALE 250
K+ + ++ E R AGA I G Q V +
Sbjct: 284 KVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERN 343
Query: 251 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289
+ + T IPV DGG+ + ALA+GA I +GR
Sbjct: 344 KYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGR 382
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 6e-05
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 22/110 (20%)
Query: 194 EDVKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQL 239
+ ++ L I+ V TAE AR ++AG + + IV+ G Q
Sbjct: 261 QRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQ- 319
Query: 240 DYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 288
I A+ + IPV DGG+R D+ KA+A GAS + +G
Sbjct: 320 ------ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Length = 369 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 212 VLTAEDARIAVQAGAAGIIVSNHGA----------RQLDYVPATIMAL-EEVVKATQGRI 260
T E+AR AGA +I A + D +++L +V +A I
Sbjct: 152 ATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV--DI 209
Query: 261 PVFLDGGVRRGTDVFKALALGASGIFIG 288
PV GG+ RG + LA GA +G
Sbjct: 210 PVVAAGGIMRGGQIAAVLAAGADAAQLG 237
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Length = 218 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 7e-05
Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 204 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 263
++ I + G T +DA+ V G I +L + T L+++ + + I +
Sbjct: 111 EIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSALGIELS 170
Query: 264 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 312
+ GG+ ++ + GR + AEG++ + E +
Sbjct: 171 ITGGIVPED-IYLFEGIKTKTFIAGRALA---GAEGQQTAAALREQIDR 215
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Length = 229 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 1e-04
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 207 ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266
+ + T + Q G I + G +A+ + V +G
Sbjct: 131 LAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHAG--CRVIAEG 188
Query: 267 GVRRGTDVFKALALGASGIFIG 288
A+ GA + +G
Sbjct: 189 RYNTPALAANAIEHGAWAVTVG 210
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 19/107 (17%)
Query: 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAA--GI---------IVSNHGARQLDYV 242
+ +K ++ +V + + A A GI IV+ G Q
Sbjct: 258 KSMKEMRQKVDADFIVGNIANPKAVDDLTFADAVKVGIGPGSICTTRIVAGVGVPQ---- 313
Query: 243 PATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 288
I A+ V Q + V DGG+R D+ KA+A GA + +G
Sbjct: 314 ---ITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLG 357
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Length = 328 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 212 VLTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 268
A A + G + + G D +P ++ L R+P+ GG
Sbjct: 125 CTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVL-LPAAANRL--RVPIIASGGF 181
Query: 269 RRGTDVFKALALGASGIFIG 288
G + ALALGA I +G
Sbjct: 182 ADGRGLVAALALGADAINMG 201
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Length = 332 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 212 VLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270
V + A+ + GA +I + + + + +V A IPV GG+
Sbjct: 117 VPSVALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTL-VRQVATAI--SIPVIAAGGIAD 173
Query: 271 GTDVFKALALGASGIFIG 288
G LGA + +G
Sbjct: 174 GEGAAAGFMLGAEAVQVG 191
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Length = 326 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 212 VLTAEDARIAVQAGAAGIIVSN-----HGARQLDYVPATIMAL-EEVVKATQGRIPVFLD 265
V + AR+ +AGA +I H T L +V ++ IPV
Sbjct: 131 VASDSLARMVERAGADAVIAEGMESGGHIG------EVTTFVLVNKVSRSV--NIPVIAA 182
Query: 266 GGVRRGTDVFKALALGASGIFIG 288
GG+ G + A ALGA + +G
Sbjct: 183 GGIADGRGMAAAFALGAEAVQMG 205
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} Length = 345 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 6e-04
Identities = 54/343 (15%), Positives = 98/343 (28%), Gaps = 73/343 (21%)
Query: 40 RNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASA 99
R + + + + S + +TT+ F +M A E A S
Sbjct: 17 RGSHMASMTGGQQMGRGSMVSTHTTIGSFDFDNCLMNAAGVYCM----TREELAAIDHSE 72
Query: 100 AGTIMTLSSWSTSSVEE--------VAST-----------GPGIRFF------QLYVYKD 134
AG+ +T T ++EE A T GI ++
Sbjct: 73 AGSFVTX----TGTLEERAGNPQPRYADTKLGSINSMGLPNLGINYYLDYVTELQKQPDS 128
Query: 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE 194
+N LV + + + + G E ++ + P D D+
Sbjct: 129 KNHFLSLVGMSPEETHTILXMVEASKYQGLVELNL----SCPNVPGXPQI-AYDFETTDQ 183
Query: 195 DVKWLQTITKLPILVK---GVLTAEDARIAVQAGAAGIIVSN------------------ 233
+ + T P+ +K + A + N
Sbjct: 184 ILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVI 243
Query: 234 ---HGARQLDYVPATIMALE---EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287
+G + AL K I + GGV G D F+ + GAS + I
Sbjct: 244 XPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQI 303
Query: 288 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 330
G + +G + + +E + M G +L++
Sbjct: 304 GTALHQ-------EGPQIFKRITKELXAI-MTEKGYETLEDFR 338
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Length = 361 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 7e-04
Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 24/109 (22%)
Query: 194 EDVKWL-QTITKLPILVKGVLTAEDARIAVQAGA----AGI---------IVSNHGARQL 239
+ +K L Q + I+ V T A GA AGI I + G L
Sbjct: 130 KTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPML 189
Query: 240 DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288
+++ +A + DGG++ D+ KALA GA + IG
Sbjct: 190 T-------CIQDCSRAD---RSIVADGGIKTSGDIVKALAFGADFVMIG 228
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 100.0 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 100.0 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 100.0 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 100.0 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 100.0 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 100.0 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 100.0 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 100.0 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 100.0 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 100.0 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 100.0 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 100.0 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 100.0 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 100.0 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 100.0 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.95 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.95 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.95 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.94 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.94 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.94 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.93 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 99.93 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.93 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.92 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 99.92 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.92 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.92 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.91 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.91 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.91 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 99.91 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.9 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.9 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 99.9 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.89 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.88 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.88 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 99.87 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.87 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.87 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 99.84 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.81 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.8 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.79 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.75 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 99.69 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 99.58 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 99.58 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 99.57 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 99.57 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 99.56 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.53 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 99.52 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 99.51 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.51 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 99.5 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 99.46 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.45 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.42 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 99.4 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 99.39 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.39 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.37 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 99.33 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 99.32 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 99.32 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 99.26 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 99.24 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 99.23 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.23 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 99.21 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 99.19 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 99.17 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 99.15 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 99.12 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 99.08 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 99.08 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 99.06 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.05 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.05 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.05 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 99.01 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 99.01 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 99.0 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 98.98 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 98.93 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 98.92 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.91 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.87 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.86 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 98.86 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.85 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 98.85 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.84 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.83 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 98.82 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 98.8 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 98.79 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.79 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 98.78 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.77 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 98.77 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.77 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.76 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 98.76 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.76 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 98.73 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.73 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 98.69 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.67 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 98.66 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.66 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 98.66 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 98.65 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 98.62 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 98.62 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 98.6 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 98.59 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 98.59 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 98.57 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 98.57 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 98.57 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 98.56 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 98.55 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 98.53 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 98.49 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 98.47 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 98.47 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 98.46 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.45 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 98.41 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.4 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 98.38 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 98.37 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 98.36 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 98.3 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 98.29 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.28 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 98.28 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 98.26 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 98.21 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 98.19 | |
| 3s1x_A | 223 | Probable transaldolase; alpha-beta barrel, conform | 98.17 | |
| 3r8r_A | 212 | Transaldolase; pentose phosphate pathway, schiff b | 98.15 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.13 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 98.09 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 98.08 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 98.08 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.05 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 98.05 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.03 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 98.02 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 98.0 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 97.97 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 97.95 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 97.91 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 97.88 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.87 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 97.86 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 97.86 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 97.83 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 97.83 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 97.81 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 97.8 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 97.79 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 97.79 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 97.76 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 97.75 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 97.75 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 97.74 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 97.74 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 97.72 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 97.71 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 97.71 | |
| 1vpx_A | 230 | Protein (transaldolase (EC 2.2.1.2)); TM0295, stru | 97.7 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 97.68 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 97.65 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 97.59 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 97.58 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 97.57 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 97.57 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 97.52 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 97.51 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 97.48 | |
| 1l6w_A | 220 | Fructose-6-phosphate aldolase 1; alpha-beta barrel | 97.46 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 97.45 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 97.44 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.43 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 97.43 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 97.43 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 97.41 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 97.39 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 97.39 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 97.39 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 97.37 | |
| 1wx0_A | 223 | Transaldolase; structural genomics, riken structur | 97.32 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 97.3 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 97.27 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.23 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.2 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 97.18 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 97.17 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 97.16 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 97.15 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 97.14 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 97.12 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 97.08 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.07 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 97.01 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 97.0 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 96.98 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 96.95 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 96.94 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 96.94 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 96.92 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 96.91 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 96.9 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 96.89 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 96.89 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 96.89 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 96.88 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 96.88 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 96.87 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 96.87 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 96.86 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 96.86 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 96.86 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 96.82 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 96.82 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 96.81 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 96.8 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 96.77 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 96.77 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 96.73 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 96.73 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 96.72 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 96.72 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 96.71 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 96.71 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 96.7 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 96.68 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 96.65 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 96.64 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 96.61 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 96.6 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 96.57 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 96.57 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 96.51 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 96.49 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 96.48 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 96.47 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 96.47 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 96.43 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 96.42 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 96.42 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 96.4 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 96.4 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 96.4 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 96.38 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 96.36 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 96.35 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 96.35 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 96.32 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 96.31 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 96.31 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 96.31 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 96.26 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 96.25 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 96.22 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 96.22 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 96.21 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 96.2 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 96.19 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 96.19 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 96.18 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 96.17 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 96.16 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 96.16 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 96.14 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 96.12 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 96.12 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 96.11 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 96.09 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 96.07 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 96.07 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 96.05 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 96.04 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 96.04 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 96.03 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 96.01 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 95.98 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.97 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 95.93 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 95.92 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 95.9 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.87 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 95.86 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 95.86 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 95.85 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 95.84 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 95.81 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 95.8 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 95.69 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 95.65 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 95.64 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 95.64 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 95.61 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 95.57 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 95.52 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 95.51 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 95.5 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 95.5 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 95.49 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 95.45 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 95.45 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 95.43 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 95.42 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 95.37 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 95.37 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 95.3 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 95.29 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 95.29 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 95.28 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 95.28 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 95.27 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 95.27 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 95.25 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 95.23 | |
| 3tr2_A | 239 | Orotidine 5'-phosphate decarboxylase; purines, pyr | 95.23 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 95.23 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 95.23 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 95.22 | |
| 3ldv_A | 255 | Orotidine 5'-phosphate decarboxylase; structural g | 95.22 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 95.22 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 95.21 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 95.2 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 95.2 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 95.19 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 95.17 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 95.17 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 95.16 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 95.14 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 95.13 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 95.12 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 95.12 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 95.12 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 95.11 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 95.11 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 95.1 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 95.1 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 95.08 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 95.08 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 95.05 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 95.05 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 95.03 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 95.02 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 94.99 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 94.99 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 94.98 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 94.97 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 94.97 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 94.96 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 94.96 | |
| 3hjz_A | 334 | Transaldolase B; parachlorococcus, marine, cyanoba | 94.94 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 94.93 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 94.9 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 94.9 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 94.9 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 94.9 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 94.9 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 94.87 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 94.87 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 94.82 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 94.81 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 94.77 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 94.75 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 94.74 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 94.74 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 94.73 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 94.72 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 94.72 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 94.72 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 94.67 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 94.65 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 94.63 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 94.58 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 94.57 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 94.51 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 94.5 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 94.49 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 94.47 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 94.47 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 94.46 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 94.46 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 94.42 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 94.4 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 94.37 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 94.36 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 94.32 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 94.3 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 94.3 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 94.29 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 94.28 | |
| 3m16_A | 329 | Transaldolase; dimer, molecular replac swiss-model | 94.28 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 94.26 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 94.24 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 94.21 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 94.19 | |
| 3tkf_A | 345 | Transaldolase; structural genomics, center for str | 94.16 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 94.15 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 94.07 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 94.05 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 94.04 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 94.03 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 94.01 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 94.0 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 94.0 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 93.99 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 93.99 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 93.97 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 93.92 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 93.9 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 93.83 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 93.8 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 93.79 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 93.78 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 93.78 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 93.77 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 93.76 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 93.76 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 93.75 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 93.73 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 93.71 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 93.71 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 93.68 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 93.66 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 93.65 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 93.62 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 93.6 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 93.59 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 93.52 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 93.47 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 93.44 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 93.43 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 93.4 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 93.27 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 93.26 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 93.23 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 93.21 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 93.14 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 93.14 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 93.01 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 93.01 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 92.99 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 92.93 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 92.86 | |
| 1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 92.84 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 92.8 | |
| 3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 92.77 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 92.76 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 92.67 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 92.59 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 92.44 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 92.43 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 92.4 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 92.23 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 92.22 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 92.21 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 92.08 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 91.99 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 91.92 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 91.9 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 91.83 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 91.82 | |
| 3cq0_A | 339 | Putative transaldolase YGR043C; alpha/beta barrel, | 91.79 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 91.75 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 91.74 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 91.66 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 91.64 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 91.5 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 91.44 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 91.43 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 91.41 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 91.37 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 91.33 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 91.25 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 91.25 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 91.23 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 91.1 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 90.95 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 90.95 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 90.93 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 90.93 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 90.84 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 90.82 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 90.79 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 90.74 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 90.73 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 90.71 |
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-77 Score=569.15 Aligned_cols=333 Identities=46% Similarity=0.748 Sum_probs=317.7
Q ss_pred CCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccccc
Q 018919 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (349)
Q Consensus 4 ~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~ 83 (349)
++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|.|+||+|++++++||+|++||++++.||++||+++++
T Consensus 2 ~~~~~d~~~~A~~~lp~~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~ 81 (352)
T 3sgz_A 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS 81 (352)
T ss_dssp CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 84 l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
+.||++|.++|++|+++|+++++|+++++++|||.+..+ ++.|||||.++|++.+.+++++++++|+++|++|+|+|+.
T Consensus 82 l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~ 161 (352)
T 3sgz_A 82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL 161 (352)
T ss_dssp GTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred hcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 999999999999999999999999999999999999887 7899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCcCcccccC-------------CCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCE
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQ-------------GLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAG 228 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~-------------~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~ 228 (349)
|+|++|+|++|..|++++.+++. ...|+.+ |++|+++|+.+++||++|++.+.++|+.+.++|+|+
T Consensus 162 g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~GaD~ 241 (352)
T 3sgz_A 162 GNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQG 241 (352)
T ss_dssp CCCHHHHHHHHHSCHHHHTTCC---------------CCCTTCCHHHHHHHHHHCCSCEEEEEECSHHHHHHHHHTTCSE
T ss_pred CcchhhhhcCCCCCcccchhhhcccccccccchhhhhccCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHcCCCE
Confidence 99999999999888655444321 2457888 999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHH
Q 018919 229 IIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLE 308 (349)
Q Consensus 229 I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~ 308 (349)
|+++||||+++++++++++.|+++++.+++++|||++|||+++.|++|+|++||++|+|||+|+|++++.|++|+.++++
T Consensus 242 I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~l~~~G~~gv~~~l~ 321 (352)
T 3sgz_A 242 IVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLD 321 (352)
T ss_dssp EEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCcHHHHHHHH
Confidence 99999999999999999999999999987789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhhhcccceec
Q 018919 309 MLREEFELAMALSGCRSLKEITRDHIVT 336 (349)
Q Consensus 309 ~l~~el~~~m~~~G~~~i~~l~~~~l~~ 336 (349)
.+++||+.+|.++|+++++|++++.++.
T Consensus 322 ~l~~el~~~m~~~G~~~i~el~~~~~~y 349 (352)
T 3sgz_A 322 ILTAELHRCMTLSGCQSVAEISPDLIQF 349 (352)
T ss_dssp HHHHHHHHHHHHHTCSBGGGCCGGGBSS
T ss_pred HHHHHHHHHHHHhCCCcHHHHhhhcchh
Confidence 9999999999999999999999998864
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-70 Score=532.62 Aligned_cols=336 Identities=56% Similarity=0.902 Sum_probs=312.4
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccc
Q 018919 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (349)
Q Consensus 3 ~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~ 82 (349)
.++|++|||+.||++||+.+|+|+.||+++|.|+++|+.+|++|.|+||+|++++++||+|+|+|++++.||++|||+++
T Consensus 26 ~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPmg~~ 105 (392)
T 2nzl_A 26 RLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQ 105 (392)
T ss_dssp CCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHHHHHSCBCCCCSSCCTTCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHhhCCHHHHhhcCCCCCccHHHHHHHHhhheEEeehhhccCCcCCCcceEECCEecCCceEecccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCC
Q 018919 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (349)
Q Consensus 83 ~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~ 161 (349)
.+.||++|.+++++|+++|+++++|++++.++|++.+..+ ++.|||||.++|++.+.+.+++++++|++++.+|+|||+
T Consensus 106 ~l~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~ 185 (392)
T 2nzl_A 106 RMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPY 185 (392)
T ss_dssp GGTSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHCTTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSS
T ss_pred ccccchHHHHHHHHHHHcCCCeeccchHHHHHHHHHHhcCCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 9999999999999999999999999999899999987755 789999999999999999999999999999999999999
Q ss_pred CCchhHHhhhhcCCCCcCcccccC--------------C---------CCCCch-HHHHHHHHHhcCCcEEEEEecCHHH
Q 018919 162 LGRREADIKNRFTLPPFLTLKNFQ--------------G---------LDLGKM-DEDVKWLQTITKLPILVKGVLTAED 217 (349)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~--------------~---------~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~ 217 (349)
.|+|++|+++++.+|.+++.++.. + ..++++ |++|+++++.+++||++|++.++++
T Consensus 186 ~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~e~ 265 (392)
T 2nzl_A 186 LGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDD 265 (392)
T ss_dssp CCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEECCHHH
T ss_pred ccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEecCCHHH
Confidence 999999999999888766433311 1 127777 9999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
|+.+.++|+|+|+|+||||++.++++++++.+.++++++++++|||++|||+++.|++|+|++|||+|++||||++++++
T Consensus 266 A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~~~~ 345 (392)
T 2nzl_A 266 AREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAF 345 (392)
T ss_dssp HHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHHHHHh
Confidence 99999999999999999999999999999999999999876899999999999999999999999999999999999998
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeccc
Q 018919 298 EGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 338 (349)
Q Consensus 298 ~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 338 (349)
.|+++++++++.+.+||+.+|.++|+.+++|+++..+....
T Consensus 346 ~g~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~l~~~~ 386 (392)
T 2nzl_A 346 QGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKNP 386 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBC---
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhCc
Confidence 89999999999999999999999999999999999886543
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-70 Score=527.14 Aligned_cols=335 Identities=35% Similarity=0.577 Sum_probs=302.6
Q ss_pred CCCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccc
Q 018919 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (349)
Q Consensus 2 ~~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~ 81 (349)
..++|++|||+.||++||+.+|+|+.||++||.|+++|+.+|++|.|+||+|++++++||+|+|+|++++.||++|||++
T Consensus 11 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPma~ 90 (368)
T 2nli_A 11 IDVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAA 90 (368)
T ss_dssp CCCSCSHHHHHHHHTTSCHHHHHHHHCCSBTSHHHHHHHHGGGGEEECCCCCCCCSCCCCCEEETTEEESSSEEECCCSC
T ss_pred ccCCCHHHHHHHHHHhCCHHHHhhcccCCCccHHHHHHHHHHhheeeeccccCCCccCCcceEECCEecCCceeecchhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCC
Q 018919 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (349)
Q Consensus 82 ~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p 160 (349)
+++.||++|.+++++|+++|+++++|++++.++|++.+..+ ++.|||||.++|++.+.+.+++++++|++++.||+|||
T Consensus 91 ~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p 170 (368)
T 2nli_A 91 HGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADST 170 (368)
T ss_dssp GGGTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHHTTCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC
T ss_pred ccCCCcHHHHHHHHHHHHcCCCEEeechHhHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 88999999999999999999999999999889999977644 78999999999999999999999999999999999999
Q ss_pred CCCchhHHhhhhcCCCCcCcccc----------cCC------CCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHH
Q 018919 161 RLGRREADIKNRFTLPPFLTLKN----------FQG------LDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQ 223 (349)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~----------~~~------~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~ 223 (349)
..|+|++|+++++.+| ++.++ ..+ ..++.+ |++|+++|+.+++||++|++.++++|+.+.+
T Consensus 171 ~~g~r~~d~~~~~~~p--~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~ 248 (368)
T 2nli_A 171 VSGNRDRDVKNKFVYP--FGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDADMAIK 248 (368)
T ss_dssp ---CBC--------CC--SCCHHHHHHHTTSGGGC-----CTTBCSBCCHHHHHHHHHHSSSCEEEEEECSHHHHHHHHH
T ss_pred cccchhHHHhhcccCc--chhhhhhcccccCCCCchHHhhhhccCchhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHH
Confidence 9999999999998777 11010 111 236778 9999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHH
Q 018919 224 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 303 (349)
Q Consensus 224 ~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv 303 (349)
+|+|+|+|+||||+++++++++++.+.++++++++++|||++|||+++.|++|+|++|||+|+|||||++++++.|++|+
T Consensus 249 ~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~~~~~~G~~gv 328 (368)
T 2nli_A 249 RGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGA 328 (368)
T ss_dssp TTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHH
Confidence 99999999999999999999999999999999876899999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhcccceeccc
Q 018919 304 RRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 338 (349)
Q Consensus 304 ~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 338 (349)
.++++.+++||+.+|.++|+++++|+++..++...
T Consensus 329 ~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 363 (368)
T 2nli_A 329 YSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDNP 363 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSHHHHHTCCEEECT
T ss_pred HHHHHHHHHHHHHHHHHhCCcCHHHhccccEeecc
Confidence 99999999999999999999999999999887654
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-68 Score=516.32 Aligned_cols=347 Identities=87% Similarity=1.286 Sum_probs=317.5
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccc
Q 018919 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (349)
Q Consensus 3 ~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~ 82 (349)
+++|++|||+.||++||+.+|+|++||+++|.|+++|+.+|++|.|+||+|++++++||+|+|+|++++.||++|||+++
T Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~~d~~t~i~G~~~~~Pi~iAPmg~~ 82 (370)
T 1gox_A 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQ 82 (370)
T ss_dssp CCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHHhCCHHHHhhhCCCCCccHHHHHHHHHHhhheeeccccCCCCCCCCceEECCcccCCceeEcccchh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 83 ~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
.+.||++|.+++++|+++|+++++|++++.++|++.+..+++.|||||.++|++.+.+.++++++.|+++++||+|+|..
T Consensus 83 ~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~ieev~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~ 162 (370)
T 1gox_A 83 KMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
T ss_dssp GGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred hhccchHHHHHHHHHHHcCCCeeccCCCCCCHHHHHhhcCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcc
Confidence 89899999999999999999999999999999999887678899999998999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCcCcccccCC--------------------CCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHH
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQG--------------------LDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIA 221 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~--------------------~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a 221 (349)
|+|++|+++++..|..++..++.. ..++.+ |+.++++++.+++||++|++.++++++.+
T Consensus 163 g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~~~~e~a~~a 242 (370)
T 1gox_A 163 GRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242 (370)
T ss_dssp CCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHH
T ss_pred cccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEEEEecCCHHHHHHH
Confidence 999999999998776653322211 346777 99999999999999999999999999999
Q ss_pred HHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHH
Q 018919 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 301 (349)
Q Consensus 222 ~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~ 301 (349)
.++|+|+|+|+||||+++++++++++.+.++++.+++++|||++|||++++|+.|++++|||+|+|||+|++++++.|++
T Consensus 243 ~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~~~~~G~~ 322 (370)
T 1gox_A 243 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEA 322 (370)
T ss_dssp HHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHH
T ss_pred HHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHHHhhccHH
Confidence 99999999999999999999999999999999988768999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceecccCCCCCCCCCCC
Q 018919 302 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLPRPVPRL 349 (349)
Q Consensus 302 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~~~~~~~~~ 349 (349)
|+.++++.+.+||+.+|.++|+.+++|++++.+..+.+.+.++.|-+|
T Consensus 323 gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~l~~~~~~~~~~~~~~~ 370 (370)
T 1gox_A 323 GVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGPSSRAVARL 370 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhhhcceeccccccccchhhcC
Confidence 999999999999999999999999999999999888887777777654
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-66 Score=521.73 Aligned_cols=339 Identities=39% Similarity=0.660 Sum_probs=312.7
Q ss_pred CCCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccc
Q 018919 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (349)
Q Consensus 2 ~~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~ 81 (349)
.+++|++|||+.||++||+.+|+|+.||+++|.|+++|+.+|++|.|+||+|++++++||+|+|+|++++.||++|||++
T Consensus 120 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~i~l~pr~L~dv~~~d~st~i~G~~l~~Pi~iAPma~ 199 (511)
T 1kbi_A 120 DNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATAL 199 (511)
T ss_dssp GGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSC
T ss_pred cccCCHHHHHHHHHhhCCHHHhhhccCCCCchhHHHHHHHHhhhhccccccccCcccccCccccCCccCCCCeEeccchh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC-hhhHHHHHHHHH--cCCeEEecCCCCCCHHHHHhhC--C-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEE
Q 018919 82 QKMAHP-EGEYATARAASA--AGTIMTLSSWSTSSVEEVASTG--P-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155 (349)
Q Consensus 82 ~~l~~~-~~~~~la~aa~~--~G~~~~~~~~~~~~~e~i~~~~--~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i 155 (349)
+++.|| +++.+++++|++ +|+++++|++++.++|++.+.. + ++.|||||.+.|++.+.+++++++++|+++|+|
T Consensus 200 ~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~~~~~~~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~i 279 (511)
T 1kbi_A 200 CKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFV 279 (511)
T ss_dssp GGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEE
T ss_pred ccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHhhcCCCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 999999 999999999999 9999999999888999998765 2 789999998899999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhhcCCCCc-Ccc------ccc-------CCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHH
Q 018919 156 TVDTPRLGRREADIKNRFTLPPF-LTL------KNF-------QGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARI 220 (349)
Q Consensus 156 ~~d~p~~g~r~~d~~~~~~~p~~-~~~------~~~-------~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~ 220 (349)
|+|+|+.|+|+++++++|..|.. +.. ... ....++.+ |+.|+++|+.+++||++|++.++++|+.
T Consensus 280 tvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~e~A~~ 359 (511)
T 1kbi_A 280 TVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIK 359 (511)
T ss_dssp ECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEECSHHHHHH
T ss_pred eCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHhHHHHHHHHHHHhCCcEEEEeCCCHHHHHH
Confidence 99999999999999999876631 110 001 11257788 9999999999999999999999999999
Q ss_pred HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHH
Q 018919 221 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 221 a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
+.++|+|+|+|+||||++++.++++++.++++++++ .+++|||++|||+++.|++|+|++|||+|+|||+|++++
T Consensus 360 a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~~l~~~ 439 (511)
T 1kbi_A 360 AAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYAN 439 (511)
T ss_dssp HHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred HHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 999999999999999999999999999999999988 347999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceecccCC
Q 018919 296 AAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 340 (349)
Q Consensus 296 ~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~ 340 (349)
++.|++|+.++++.+++||+.+|.++|+.+++|++++.+..+...
T Consensus 440 ~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~l~~~~~~ 484 (511)
T 1kbi_A 440 SCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTLK 484 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTTTT
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhHHHhhhhhhh
Confidence 888999999999999999999999999999999999988766554
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-65 Score=493.95 Aligned_cols=335 Identities=41% Similarity=0.700 Sum_probs=309.0
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccc
Q 018919 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (349)
Q Consensus 3 ~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~ 82 (349)
+++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|.|+||+|++++++||+|+|+|++++.||++|||+++
T Consensus 4 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pv~iap~~~~ 83 (380)
T 1p4c_A 4 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLN 83 (380)
T ss_dssp CCSSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHHhCCHHHHHHhCCCCCccHHHHHHHHHHhheeeeccccCCCccCcceeEECCeecCCceEecCcccc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 83 ~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
++.||++|.+++++|+++|+++++|+.+++++|++.....++.|||+|.++ ++...+.+++++++|+++++||+|.|..
T Consensus 84 ~~~~~~~~~~~a~aa~~~G~~~~vss~s~~~le~i~~~~~~~~~fQly~~~-~~~~~~~i~~a~~aG~~al~vTvd~p~~ 162 (380)
T 1p4c_A 84 GALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVN 162 (380)
T ss_dssp GGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCSCEEEEECCSS-HHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred ccCCCcHHHHHHHHHHHcCCCeecCccccCCHHHHHhccCCCeEEEEEech-HHHHHHHHHHHHHcCCCEEEEeecCccc
Confidence 899999999999999999999999999888999988764578999999987 8889999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCcCcccc--------c------------CCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHH
Q 018919 163 GRREADIKNRFTLPPFLTLKN--------F------------QGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIA 221 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~--------~------------~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a 221 (349)
|+|++|+++++..|..+...+ . ....+|.+ |+.|+++++.+++||++|++.++++|+.+
T Consensus 163 g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~~~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a 242 (380)
T 1p4c_A 163 GYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 242 (380)
T ss_dssp CCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHH
T ss_pred cchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCccccHHHHHHHHHhcCCCEEEEecCcHHHHHHH
Confidence 999999999997664322211 0 11347888 99999999999999999999999999999
Q ss_pred HHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHH
Q 018919 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 301 (349)
Q Consensus 222 ~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~ 301 (349)
.++|+|+|+++||||++.++++++++.+.++++.+ ++|||++|||++++|+.|+|++||++|++||++++++.+.|++
T Consensus 243 ~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~--~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~~~~~g~~ 320 (380)
T 1p4c_A 243 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT--GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGET 320 (380)
T ss_dssp HHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH--CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHc--CCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999988 5699999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceecccCC
Q 018919 302 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 340 (349)
Q Consensus 302 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~ 340 (349)
++.++++.+.+||+.+|.++|+.+++|++++.++..+..
T Consensus 321 ~v~~~~~~l~~el~~~m~~~G~~~i~el~~~~l~~~g~~ 359 (380)
T 1p4c_A 321 GVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNEGVT 359 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEEEC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhccCeEEecccc
Confidence 999999999999999999999999999999998765544
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=339.96 Aligned_cols=272 Identities=18% Similarity=0.280 Sum_probs=213.9
Q ss_pred hhccccccccccc--CCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHH--
Q 018919 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-- 116 (349)
Q Consensus 41 ~~~~~~~l~p~~l--~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~-- 116 (349)
..||+|+|+|+.| .+.+++||+|+|+|++++.||++|||++++..+++.|.++|++|+++|+++++|+++.. +|+
T Consensus 54 ~~fd~i~l~~~~lP~~~~~~vd~st~i~g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~-le~~~ 132 (365)
T 3sr7_A 54 NSFDDIELIHHSLPDYDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTA-LKNPD 132 (365)
T ss_dssp CGGGGEEECCCSSCCSCGGGCCCCEEETTEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC------------
T ss_pred CCcceEEEECCCCCcCCcccccceEEECCEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeeccccccc-ccCcc
Confidence 5899999999999 57789999999999999999999999999988889999999999999999999988642 222
Q ss_pred -----HHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC
Q 018919 117 -----VASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (349)
Q Consensus 117 -----i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~ 190 (349)
+.+..| .+.+..|-..... .+..+.++..|++++.+|++.. ++ ...|.+ ++
T Consensus 133 ~~~~~v~r~~P~~~~ianig~~~~~---e~~~~~ve~~~adal~ihln~~---------qe-~~~p~G----------d~ 189 (365)
T 3sr7_A 133 DTSYQVKKSRPHLLLATNIGLDKPY---QAGLQAVRDLQPLFLQVHINLM---------QE-LLMPEG----------ER 189 (365)
T ss_dssp ------------CCEEEEEETTSCH---HHHHHHHHHHCCSCEEEEECHH---------HH-HTSSSS----------CC
T ss_pred ccceEehhhCCCCcEEEEeCCCCCH---HHHHHHHHhcCCCEEEEecccc---------cc-ccCCCC----------CC
Confidence 222234 3444444332222 2455666778999999999852 11 122331 34
Q ss_pred ch--H-HHHHHHHHhcCCcEEEEEe---cCHHHHHHHHHcCCCEEEEecCCCCCC---------------CCchhhHHHH
Q 018919 191 KM--D-EDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQL---------------DYVPATIMAL 249 (349)
Q Consensus 191 ~~--~-~~i~~i~~~~~~pv~vK~v---~~~~~a~~a~~~G~d~I~v~~~gg~~~---------------~~~~~~~~~l 249 (349)
++ | +.|+++++.+++||++|++ .++++|+.+.++|+|+|+|+||||+++ ++|.++...|
T Consensus 190 ~~~~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L 269 (365)
T 3sr7_A 190 EFRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVL 269 (365)
T ss_dssp CCHHHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHH
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHH
Confidence 44 5 6799999999999999998 799999999999999999999999864 5788888888
Q ss_pred HHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhh
Q 018919 250 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 329 (349)
Q Consensus 250 ~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l 329 (349)
.++. .+.+++|||++|||+++.|++|+|++|||+|++||+|++++.+.|++++.++++.+.+||+.+|.++|+++++||
T Consensus 270 ~~v~-~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l~a~~~~G~~~v~~~l~~l~~eL~~~m~~~G~~si~eL 348 (365)
T 3sr7_A 270 LNAQ-PLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLIMCALNCQTIAEL 348 (365)
T ss_dssp HHHG-GGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTCSSTGGG
T ss_pred HHHH-HhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCcCHHHh
Confidence 8764 444579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceecc
Q 018919 330 TRDHIVTE 337 (349)
Q Consensus 330 ~~~~l~~~ 337 (349)
++..+...
T Consensus 349 ~~~~~~~~ 356 (365)
T 3sr7_A 349 RNVDYLLY 356 (365)
T ss_dssp GGCCEEEC
T ss_pred ccCCEEEc
Confidence 99887754
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=328.51 Aligned_cols=282 Identities=26% Similarity=0.279 Sum_probs=213.6
Q ss_pred cccccCCCcchHHHHHHHhhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChh---hHHHHHHH
Q 018919 23 FDYYASGAEDQWTLQENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEG---EYATARAA 97 (349)
Q Consensus 23 ~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~---~~~la~aa 97 (349)
.+|+....+++.|+++|+.+|++|.|+|++|+ +++++||+|+|+|++++.||++|||+++ ++.+ +.+++++|
T Consensus 8 ~~hi~~~~~~~~~~~~~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~l~~P~~iapm~g~---~~~~~~~~~~la~~a 84 (332)
T 1vcf_A 8 RKHLEACLEGEVAYQKTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGG---EENGERINLALAEAA 84 (332)
T ss_dssp ---------------CCCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccccchhhhhhcEEehhhCCCCCCCCCCcceEECCcccCCceEEeccccC---CcchhHHHHHHHHHH
Confidence 48899999999999999999999999999998 7789999999999999999999999874 4444 47999999
Q ss_pred HHcCCeEEecCCCCCCHHHH--------HhhCC-CceE-----EEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 98 SAAGTIMTLSSWSTSSVEEV--------ASTGP-GIRF-----FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 98 ~~~G~~~~~~~~~~~~~e~i--------~~~~~-~~~~-----~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
+++|+++++|++++. +++. ....+ .+.+ .|++. .+++...+. ++..+++++.++++..
T Consensus 85 ~~~G~~~~~~~~~~~-le~~~~~~~~ql~~~~~d~pv~~~~~~~q~~~-~~~~~~~~a---~~~~~~~a~~i~~n~~--- 156 (332)
T 1vcf_A 85 EALGVGMMLGSGRIL-LERPEALRSFRVRKVAPKALLIANLGLAQLRR-YGRDDLLRL---VEMLEADALAFHVNPL--- 156 (332)
T ss_dssp HHHTCEEEEEECHHH-HHCTTTHHHHCCTTTCSSSCEEEEEEGGGGGT-CCHHHHHHH---HHHHTCSEEEEECCHH---
T ss_pred HHcCCCEEeCCchhc-ccCCCccceEEeeccCCCceeecccChhhhhc-cChHHHHHH---HhhcCCCceeeccchH---
Confidence 999999999988653 4431 11111 2222 23322 233333333 3445889999988642
Q ss_pred chhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe---cCHHHHHHHHHcCCCEEEEecCCC---
Q 018919 164 RREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA--- 236 (349)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---~~~~~a~~a~~~G~d~I~v~~~gg--- 236 (349)
+..+. .. ..+.. .|+.++++|+ +++||++|++ .++++|+.+.++|+|+|+++||||
T Consensus 157 ------~~~~~-~~---------~~~~~~~~~~i~~vr~-~~~Pv~vK~v~~g~~~e~a~~~~~~G~d~I~vs~~ggt~~ 219 (332)
T 1vcf_A 157 ------QEAVQ-RG---------DTDFRGLVERLAELLP-LPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSW 219 (332)
T ss_dssp ------HHHHT-TS---------CCCCTTHHHHHHHHCS-CSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCH
T ss_pred ------HHHhc-CC---------CccHHHHHHHHHHHHc-CCCCEEEEecCCCCCHHHHHHHHHcCCCEEEeCCCCCCcc
Confidence 11111 00 01111 3789999999 9999999988 899999999999999999999987
Q ss_pred ------CC---------CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHH
Q 018919 237 ------RQ---------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 301 (349)
Q Consensus 237 ------~~---------~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~ 301 (349)
++ .++++++++.+.++++.++ ++|||++|||+++.|++|+|++|||+|++||+|++++ +.|++
T Consensus 220 ~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~-~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l~~~-~~G~~ 297 (332)
T 1vcf_A 220 ARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLP-HLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPA-LEGAE 297 (332)
T ss_dssp HHHHHTC--------CCTTCSCBHHHHHHHHHHHCS-SSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHH-TTCHH
T ss_pred hhHHHhhccccchhhhHhhccccHHHHHHHHHHhcC-CCeEEEECCCCCHHHHHHHHHhCCChHhhhHHHHHHH-hccHH
Confidence 54 6788899999999998874 6999999999999999999999999999999999988 78999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 302 GVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 302 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
++.++++.+.+||+.+|.++|+++++|++++.-
T Consensus 298 gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~~ 330 (332)
T 1vcf_A 298 RVAAWIGDYLEELRTALFAIGARNPKEARGRVE 330 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSGGGGTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHhhhhc
Confidence 999999999999999999999999999987643
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=317.64 Aligned_cols=273 Identities=23% Similarity=0.322 Sum_probs=222.2
Q ss_pred HhhcccccccccccC--CCCCCCcceeEcCeecCcceeeccccccc-ccCChhhHHHHHHHHHcCCeEEecCCCCCCHHH
Q 018919 40 RNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQK-MAHPEGEYATARAASAAGTIMTLSSWSTSSVEE 116 (349)
Q Consensus 40 ~~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~-l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~ 116 (349)
..+|++|.|+|++|+ +++++|++|+|+|.++++||++|||++.. ..+++++.+++++|.++|++++++++++. +++
T Consensus 22 ~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~-l~~ 100 (349)
T 1p0k_A 22 ETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA-LKD 100 (349)
T ss_dssp CCSGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT-TTC
T ss_pred cCccceEEEEccccCCCCcccCCceeEECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc-ccC
Confidence 568999999999998 77899999999999999999999996644 34456688999999999999999988653 322
Q ss_pred ---------HHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCC
Q 018919 117 ---------VASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (349)
Q Consensus 117 ---------i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (349)
+....+ .+.+.|+....+.+.. .+.+++.|+++|++|++||... ..|.
T Consensus 101 ~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~~~---~~~~~~~gad~i~i~~~~~~~~----------~~~~--------- 158 (349)
T 1p0k_A 101 PSERLSYEIVRKENPNGLIFANLGSEATAAQA---KEAVEMIGANALQIHLNVIQEI----------VMPE--------- 158 (349)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEEEETTCCHHHH---HHHHHHTTCSEEEEEECTTTTC-----------------------
T ss_pred cccccceehhhhhCCCceeEEeecCCCCHHHH---HHHHHhcCCCeEEecccchhhh----------cCCC---------
Confidence 232333 5678888743455433 3445678999999999997421 1111
Q ss_pred CCCCc---hHHHHHHHHHhcCCcEEEEEe---cCHHHHHHHHHcCCCEEEEecCCC---------CC-------CCCchh
Q 018919 187 LDLGK---MDEDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA---------RQ-------LDYVPA 244 (349)
Q Consensus 187 ~~~~~---~~~~i~~i~~~~~~pv~vK~v---~~~~~a~~a~~~G~d~I~v~~~gg---------~~-------~~~~~~ 244 (349)
.++. .++.++++|+.+++||++|++ .++++++.+.++|+|+|+++|||| ++ .+++++
T Consensus 159 -~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~ 237 (349)
T 1p0k_A 159 -GDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGIS 237 (349)
T ss_dssp -----CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCC
T ss_pred -CCcchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCcc
Confidence 1232 267899999999999999997 789999999999999999999988 43 467888
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 245 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 245 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
+++.|.++++.+ .++|||++|||++++|+.|++++|||+|+|||+|++.+.+.|++++.++++.+.+||+.+|.++|+.
T Consensus 238 ~~~~l~~v~~~~-~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~~~~~g~~~~~~~~~~~~~~l~~~m~~~G~~ 316 (349)
T 1p0k_A 238 TAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGAR 316 (349)
T ss_dssp HHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999998876 4799999999999999999999999999999999998877788999999999999999999999999
Q ss_pred Chhhhcccceecc
Q 018919 325 SLKEITRDHIVTE 337 (349)
Q Consensus 325 ~i~~l~~~~l~~~ 337 (349)
+++|++++.+...
T Consensus 317 ~i~el~~~~~~~~ 329 (349)
T 1p0k_A 317 TIADLQKAPLVIK 329 (349)
T ss_dssp BHHHHTTCCEEEC
T ss_pred CHHHHhhCCeecc
Confidence 9999999987753
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=314.57 Aligned_cols=274 Identities=22% Similarity=0.248 Sum_probs=219.7
Q ss_pred hhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC------
Q 018919 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------ 112 (349)
Q Consensus 41 ~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~------ 112 (349)
..||+|+|+|+.|+ +.+++||+|+|+|++++.||++|||+|++....+.+..++++|+++|+++++|+++..
T Consensus 27 ~~~~~v~l~~~~lp~~~~~~vd~st~~~g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~ 106 (368)
T 3vkj_A 27 TFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEA 106 (368)
T ss_dssp CSGGGEEECCCSSCBSBGGGCBCCEEETTEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGG
T ss_pred CCcceEEEEcCCCCccCcccccceeEECCEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHH
Confidence 47999999999998 7889999999999999999999999987754456677899999999999999998421
Q ss_pred --CHHHHHhhCC-CceEEEEeec-----CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc
Q 018919 113 --SVEEVASTGP-GIRFFQLYVY-----KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (349)
Q Consensus 113 --~~e~i~~~~~-~~~~~Ql~~~-----~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (349)
+.+-+++..| .+.+-++... .+.+... +.++..+++++.||++. .+..++ |.+
T Consensus 107 ~~s~~~vr~~ap~~~~~anlg~~ql~~~~~~~~~~---~av~~~~a~al~Ihln~---------~~~~~~-p~g------ 167 (368)
T 3vkj_A 107 RESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQ---DAIQMIEADAIAVHLNP---------AQEVFQ-PEG------ 167 (368)
T ss_dssp SHHHHHHHHHCSSSCEEEEEEGGGGGTTCCHHHHH---HHHHHTTCSEEEEECCH---------HHHHHS-SSC------
T ss_pred HhhHHHHHHhCcCcceecCcCeeecCCCCCHHHHH---HHHHHhcCCCeEEEecc---------hhhhhC-CCC------
Confidence 1112444566 4444444431 2333322 22344588999999863 122221 321
Q ss_pred CCCCCCc--hHHHHHHHHHhcCCcEEEEEe---cCHHHHHHHHHcCCCEEEEecCCC---------CC------------
Q 018919 185 QGLDLGK--MDEDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA---------RQ------------ 238 (349)
Q Consensus 185 ~~~~~~~--~~~~i~~i~~~~~~pv~vK~v---~~~~~a~~a~~~G~d~I~v~~~gg---------~~------------ 238 (349)
..+-. .++.|+++++.+++||++|++ .++++|+.+.++|+|+|+|+|||| |+
T Consensus 168 --~~~~~~~~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~ 245 (368)
T 3vkj_A 168 --EPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAK 245 (368)
T ss_dssp --CCBCBTHHHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHH
T ss_pred --CchhhHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhcc
Confidence 01122 378899999999999999987 799999999999999999999999 43
Q ss_pred --CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018919 239 --LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 239 --~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~ 316 (349)
.++|.|+...|.+++++++ ++|||++|||+++.|++|+|++|||+|++||||++++. .|++++.++++.+.+||+.
T Consensus 246 ~~~~~g~pt~~~l~~v~~~~~-~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~~~~-~G~~~v~~~l~~l~~eL~~ 323 (368)
T 3vkj_A 246 NFLDWGVPTAASIMEVRYSVP-DSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAI-EGKESLEQFFRKIIFELKA 323 (368)
T ss_dssp HTTTCSCBHHHHHHHHHHHST-TCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHH-HCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHh-cChHHHHHHHHHHHHHHHH
Confidence 2347788889999998874 69999999999999999999999999999999999876 6899999999999999999
Q ss_pred HHHHcCCCChhhhcccceecc
Q 018919 317 AMALSGCRSLKEITRDHIVTE 337 (349)
Q Consensus 317 ~m~~~G~~~i~~l~~~~l~~~ 337 (349)
+|.++|+++++|+++..+...
T Consensus 324 ~m~~~G~~~i~el~~~~l~~~ 344 (368)
T 3vkj_A 324 AMMLTGSKDVDALKKTSIVIL 344 (368)
T ss_dssp HHHHTTCCBHHHHHTCCEEEC
T ss_pred HHHHhCCCCHHHhccCCEEec
Confidence 999999999999998887754
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-42 Score=334.37 Aligned_cols=308 Identities=18% Similarity=0.241 Sum_probs=232.5
Q ss_pred HHhCCccccccccCCCcchHHHHHHHhhccccccccc-ccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHH
Q 018919 15 KEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (349)
Q Consensus 15 ~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~-~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~l 93 (349)
..+||++.|+|+.+|++++ ++|..+||+|.|+|+ .+.+++++|++|+|+|++++.||++|||++. .++ ++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~fd~v~l~p~~~~~~~~~vdlst~l~g~~l~~Pii~Apm~g~--~~~----~~ 83 (393)
T 2qr6_A 13 ENLYFQGMRDHVEIGIGRE---ARRTYSLDDISVVSSRRTRSSKDVDTTWHIDAYKFDLPFMNHPSDAL--ASP----EF 83 (393)
T ss_dssp -CHHHHHHHHEEEEETTEE---EECCCCGGGEEECCCSCCCCGGGCBCCEEETTEEESSSEEECCCTTT--CCH----HH
T ss_pred ccccccchHHHHhcccccc---cccCCChhhEEEccCCCCCChhHCCceeEEcccccCCCeEeCCCCCc--ccH----HH
Confidence 4678999999999999999 468999999999998 7889999999999999999999999999853 344 79
Q ss_pred HHHHHHcCCeEEecCC--------CCCCHHHHHhhCC-------CceEEEEeecC-ChhHHHHHHHHHHHcCCCEEEEec
Q 018919 94 ARAASAAGTIMTLSSW--------STSSVEEVASTGP-------GIRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTV 157 (349)
Q Consensus 94 a~aa~~~G~~~~~~~~--------~~~~~e~i~~~~~-------~~~~~Ql~~~~-~~~~~~~~~~~~~~~G~~~i~i~~ 157 (349)
+++++++|+++++++. ...+++++++..+ .+.|+|+|... +++...+.+++++++|+.++. .+
T Consensus 84 a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~~~~~i~~~~~~g~~v~~-~v 162 (393)
T 2qr6_A 84 VIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAV-RV 162 (393)
T ss_dssp HHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCCEE-EE
T ss_pred HHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHHHHHHHHHHhhcCCeEEE-Ee
Confidence 9999999999999862 2234566654422 34688988644 888888999999998887754 23
Q ss_pred CCCCCCchhHHhhhhcC-C-CCcCcc--cc-cCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEE
Q 018919 158 DTPRLGRREADIKNRFT-L-PPFLTL--KN-FQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIV 231 (349)
Q Consensus 158 d~p~~g~r~~d~~~~~~-~-p~~~~~--~~-~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v 231 (349)
.. .+..+....+. . .+.+.. .. ......+.. |+.++++++.+++||++|++.++++|+.+.++|+|+|++
T Consensus 163 ~~----~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~ggi~t~e~a~~~~~~Gad~i~v 238 (393)
T 2qr6_A 163 SP----QNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIAGGVNDYTTALHMMRTGAVGIIV 238 (393)
T ss_dssp CT----TTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHCSSCEEEECCCSHHHHHHHHTTTCSEEEE
T ss_pred CC----ccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhcCCCEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 21 23322222220 0 000000 00 011234544 888999999999999999999999999999999999999
Q ss_pred ec--CCCCCCC-CchhhHHHHHHHHHH-------hcCC-CcEEEecCCCCHHHHHHHHHhCCCEEEEchHH---------
Q 018919 232 SN--HGARQLD-YVPATIMALEEVVKA-------TQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPV--------- 291 (349)
Q Consensus 232 ~~--~gg~~~~-~~~~~~~~l~~i~~~-------~~~~-ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~--------- 291 (349)
++ |++++++ .++++++.+.+++++ ++++ +|||++|||+++.|++|+|++||++|++||+|
T Consensus 239 g~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~V~iG~~~l~~~es~~~ 318 (393)
T 2qr6_A 239 GGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSPLARAEEAAGK 318 (393)
T ss_dssp SCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSEEEECGGGGGSTTCTTT
T ss_pred CCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCCCCCCc
Confidence 77 5555544 468899999998887 5333 99999999999999999999999999999996
Q ss_pred --HHHHhhcCH---HHH--------------HHHH----------HHHHHHHHHHHHHcCCCChhhhcccceec
Q 018919 292 --VYSLAAEGE---KGV--------------RRVL----------EMLREEFELAMALSGCRSLKEITRDHIVT 336 (349)
Q Consensus 292 --l~~~~~~G~---~gv--------------~~~l----------~~l~~el~~~m~~~G~~~i~~l~~~~l~~ 336 (349)
+|++++.|. +|+ .+++ +.+.+||+..|.++|+++++||++..+..
T Consensus 319 ~~~~g~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~el~~~m~~~G~~~i~el~~~~~~~ 392 (393)
T 2qr6_A 319 GYFWPAVAAHPRFPRGVVTESVDLDEAAPSLEQILHGPSTMPWGVENFEGGLKRALAKCGYTDLKSFQKVSLHV 392 (393)
T ss_dssp TEECCGGGGCSSSCCCCCEECC----CCCCHHHHHHCCCSCTTSSSCHHHHHHHHHHHHTCSBHHHHTTCCEEE
T ss_pred eEEEecccCcccCCCccccccccccccchhHHHHhccchhHHHHHHHHHHHHHHHHHHhCCCCHHHHhhccEec
Confidence 455544332 232 3333 36689999999999999999999887753
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=295.28 Aligned_cols=264 Identities=18% Similarity=0.224 Sum_probs=197.2
Q ss_pred HHHHHHhhcccccccccc--cCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC
Q 018919 35 TLQENRNAFSRILFRPRI--LIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS 112 (349)
Q Consensus 35 t~~~n~~~~~~~~l~p~~--l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~ 112 (349)
-.-.|..+||+|.|+|++ +.+++++|++|+|+|++++.||++|||++.+ +..+++++.+.|...++......
T Consensus 8 ~~~~~~~~fd~v~l~p~~~~~~~~~~vdl~t~i~g~~l~~Pi~~a~mag~s------~~~la~a~~~~gg~g~~~~~~~~ 81 (336)
T 1ypf_A 8 HHMGNVFDYEDIQLIPAKCIVNSRSECDTTVTLGKHKFKLPVVPANMQTII------DERIATYLAENNYFYIMHRFQPE 81 (336)
T ss_dssp ----CCCCGGGEEECCCCCCCSSGGGCBCCEEETTEEESSSEEECSSTTTC------CHHHHHHHHHTTCCCCCCCSSGG
T ss_pred ccccccCCcceEEEecccCCCCCcccCcceEEECCEEecCcEEECCCCCCC------hHHHHHHHHhCCCEEEecCCCCH
Confidence 345689999999999999 5788999999999999999999999999764 35777765666554443322211
Q ss_pred CHHH-HHhhC-CC-ceEEEEeecCChhHHHHHHHHHHHcC--CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCC
Q 018919 113 SVEE-VASTG-PG-IRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (349)
Q Consensus 113 ~~e~-i~~~~-~~-~~~~Ql~~~~~~~~~~~~~~~~~~~G--~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (349)
..++ +.+.. .+ +..+|+ . .+++ ..+.++.+.+.| ++++.+|+..
T Consensus 82 ~~~~~i~~~~~~g~~v~v~~-g-~~~~-~~~~a~~~~~~g~~~~~i~i~~~~---------------------------- 130 (336)
T 1ypf_A 82 KRISFIRDMQSRGLIASISV-G-VKED-EYEFVQQLAAEHLTPEYITIDIAH---------------------------- 130 (336)
T ss_dssp GHHHHHHHHHHTTCCCEEEE-C-CSHH-HHHHHHHHHHTTCCCSEEEEECSS----------------------------
T ss_pred HHHHHHHHHHhcCCeEEEeC-C-CCHH-HHHHHHHHHhcCCCCCEEEEECCC----------------------------
Confidence 2222 22221 12 456663 2 2333 345677888888 8888876521
Q ss_pred CCCch-HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEecCCCCCCC------Cchh--hHHHHHHHHHHhc
Q 018919 188 DLGKM-DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLD------YVPA--TIMALEEVVKATQ 257 (349)
Q Consensus 188 ~~~~~-~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~~gg~~~~------~~~~--~~~~l~~i~~~~~ 257 (349)
.++.. |+.|+++++.++.|+++|+ +.++++|+.+.++|||+|+++||||++.+ ++.+ +++.+.++++++
T Consensus 131 G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~- 209 (336)
T 1ypf_A 131 GHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA- 209 (336)
T ss_dssp CCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTC-
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHc-
Confidence 02344 8899999999976766777 89999999999999999999999998754 2334 789999999887
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhhcCHHHHH-------------
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAEGEKGVR------------- 304 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~~G~~gv~------------- 304 (349)
++|||++|||+++.|++|+|++|||+|++||+|+ |++++.|++++.
T Consensus 210 -~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~t~Es~~~~~~~~g~~~k~~~g~~~~~~~g~~~~~~g~~~~~~~~ 288 (336)
T 1ypf_A 210 -SKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYKEYFGSASEFQKGEKKNVEGKKMFVEHK 288 (336)
T ss_dssp -SSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTTCTTSSSCCC-----------------------CTTSCCSSSSCC
T ss_pred -CCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhccccCCCceeeeCCeEeeeeecccchhhccCccccccceeeeccc
Confidence 8999999999999999999999999999999999 888887777665
Q ss_pred ----HHHHHHHHHHHHHHHHcCCCChhhhcccceecc
Q 018919 305 ----RVLEMLREEFELAMALSGCRSLKEITRDHIVTE 337 (349)
Q Consensus 305 ----~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~ 337 (349)
++++.+++||+..|.++|+++++||++..+...
T Consensus 289 g~~~~~~~~l~~el~~~m~~~G~~~i~el~~~~~~~~ 325 (336)
T 1ypf_A 289 GSLEDTLIEMEQDLQSSISYAGGTKLDSIRTVDYVVV 325 (336)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSSBGGGGGGCCEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHhCcccHHHhCcCCEEEE
Confidence 899999999999999999999999998876654
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=291.67 Aligned_cols=261 Identities=20% Similarity=0.217 Sum_probs=205.2
Q ss_pred HHHHHhhcccccccccccC-CC-CCCCcceeEc-----CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecC
Q 018919 36 LQENRNAFSRILFRPRILI-DV-SKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS 108 (349)
Q Consensus 36 ~~~n~~~~~~~~l~p~~l~-~~-~~~d~s~~l~-----g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~ 108 (349)
+++|..+||+|.|+|+.+. +. +++||+|+|+ +++++.||++|||++.+ +.++|++++++|..++++.
T Consensus 15 ~~~~~~~fddv~l~p~~~~~~~~~~vdl~t~l~~~~~~~~~l~~PIi~ApM~~~~------~~~lA~Ava~~Gglg~i~~ 88 (351)
T 2c6q_A 15 VPRGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVG------TFEMAKVLCKFSLFTAVHK 88 (351)
T ss_dssp ----CCCGGGEEECCCCBCCCCGGGCBCCEEEECTTTCCEEEECCEEECSSTTTS------CHHHHHHHHHTTCEEECCT
T ss_pred cccCCCCcceEEEECCCCCCCccccceeEEEeccccCcCccccCCEEECCCCCCC------cHHHHHHHHHCCCEEEEcC
Confidence 5778999999999999986 67 7999999999 99999999999998643 6789999999999988864
Q ss_pred CCCCCHHHHHhh---CCC---ceEEEEeecCChhHHHHHHHHHHHc--CCCEEEEecCCCCCCchhHHhhhhcCCCCcCc
Q 018919 109 WSTSSVEEVAST---GPG---IRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180 (349)
Q Consensus 109 ~~~~~~e~i~~~---~~~---~~~~Ql~~~~~~~~~~~~~~~~~~~--G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~ 180 (349)
+.+++++.+. .|. .....+ ..+.+. .+.++.+.+. |++++.+++..
T Consensus 89 --~~s~e~~~~~i~~~p~~l~~v~~~~--g~~~~~-~~~~~~l~~~~~g~~~i~i~~~~--------------------- 142 (351)
T 2c6q_A 89 --HYSLVQWQEFAGQNPDCLEHLAASS--GTGSSD-FEQLEQILEAIPQVKYICLDVAN--------------------- 142 (351)
T ss_dssp --TCCHHHHHHHHHHCGGGCTTEEEEE--CSSHHH-HHHHHHHHHHCTTCCEEEEECSC---------------------
T ss_pred --CCCHHHHHHHHhhCchhhheeEeec--CCChHH-HHHHHHHHhccCCCCEEEEEecC---------------------
Confidence 4567765443 231 122222 122332 3445555555 89998876532
Q ss_pred ccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC-----CCC-CchhhHHHHHHH
Q 018919 181 LKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLD-YVPATIMALEEV 252 (349)
Q Consensus 181 ~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~-----~~~-~~~~~~~~l~~i 252 (349)
.++.. |+.++++|+.+ ++||++|.+.++++|+.+.++|+|+|++++++|. +++ ++.+++..+.++
T Consensus 143 -------g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v 215 (351)
T 2c6q_A 143 -------GYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMEC 215 (351)
T ss_dssp -------TTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHH
T ss_pred -------CCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHH
Confidence 02233 88999999999 8999999999999999999999999999987763 222 356788888888
Q ss_pred HHHhcC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhhcC------------
Q 018919 253 VKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAEG------------ 299 (349)
Q Consensus 253 ~~~~~~-~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~~G------------ 299 (349)
.+.++. ++|||++|||+++.|++|||++||++|++||+|+ |++++.|
T Consensus 216 ~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~~~Es~~~~~~~~g~~~k~~~g~~~~~a~~~~~g~~~~~ 295 (351)
T 2c6q_A 216 ADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEY 295 (351)
T ss_dssp HHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSCSCEEEETTEEEEEEECTTBHHHHHHHSSSCCTT
T ss_pred HHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhcCccCcchhhhhcCeeeeeccccccHhhhhccccccccc
Confidence 776532 7999999999999999999999999999999997 6665433
Q ss_pred --HHH----------HHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 300 --EKG----------VRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 300 --~~g----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
++| +.++++.|..||+..|.++|+++++||++....
T Consensus 296 ~~~~g~~~~~~~~g~v~~~~~~l~~~l~~~m~~~G~~~i~~l~~~~~~ 343 (351)
T 2c6q_A 296 RASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTF 343 (351)
T ss_dssp CCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBGGGHHHHCCE
T ss_pred ccccceEEEeeccCcHHHHHHHHHHHHHHHHHHcCCCCHHHHhhCCcE
Confidence 366 999999999999999999999999999876543
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=281.39 Aligned_cols=253 Identities=19% Similarity=0.240 Sum_probs=207.0
Q ss_pred hhcccccccccccCCCC--CCCc--ceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHH
Q 018919 41 NAFSRILFRPRILIDVS--KIDM--NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE 116 (349)
Q Consensus 41 ~~~~~~~l~p~~l~~~~--~~d~--s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~ 116 (349)
.+||+|.|+|+.+.+.. ++|+ +|+|+|++++.||++|||. +.+|.+||++++++|++++++++ .++|+
T Consensus 8 ~~fddv~l~P~~~~~~~r~~vd~~~~t~l~g~~l~~Pii~ApM~------~vte~~lA~A~a~~Gg~gvi~~~--~s~ee 79 (361)
T 3r2g_A 8 ITFDDVLLVPSYNHHESRRVVETTSTDRLGKLTLNLPVISANMD------TITESNMANFMHSKGAMGALHRF--MTIEE 79 (361)
T ss_dssp CCGGGEEECCCCCCSCTTCCCCCCEECTTSSCEESSCEEECCST------TTCSHHHHHHHHHTTCEEBCCSC--SCHHH
T ss_pred cccceEEEECCCCCCCccccccceeeEEECCEEcCCCEEECCCC------CchHHHHHHHHHHcCCCEEEeCC--CCHHH
Confidence 47999999999998765 7654 5599999999999999994 34588999999999999999864 68898
Q ss_pred HHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHH
Q 018919 117 VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DED 195 (349)
Q Consensus 117 i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~ 195 (349)
+.+..+...|+|.|...+++...+.++++.++|++.|+++.... .+.. |+.
T Consensus 80 ~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI~id~a~G----------------------------~~~~~~e~ 131 (361)
T 3r2g_A 80 NIQEFKKCKGPVFVSVGCTENELQRAEALRDAGADFFCVDVAHA----------------------------HAKYVGKT 131 (361)
T ss_dssp HHHHHHTCCSCCBEEECSSHHHHHHHHHHHHTTCCEEEEECSCC----------------------------SSHHHHHH
T ss_pred HHHHHhhcceEEEEEcCCCHHHHHHHHHHHHcCCCEEEEeCCCC----------------------------CcHhHHHH
Confidence 87654444567777766777788899999999999877654321 1223 789
Q ss_pred HHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC------CchhhHHHHHHHHHHhcCCCcEEEecCC
Q 018919 196 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD------YVPATIMALEEVVKATQGRIPVFLDGGV 268 (349)
Q Consensus 196 i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~------~~~~~~~~l~~i~~~~~~~ipvia~GGI 268 (349)
|+++|+.+ ++||++|.+.++++|+.+.++|||+|+|++++|++.+ .+.+++..+.++++.+ . |||++|||
T Consensus 132 I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~--~-PVIAdGGI 208 (361)
T 3r2g_A 132 LKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRAD--R-SIVADGGI 208 (361)
T ss_dssp HHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSS--S-EEEEESCC
T ss_pred HHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHHHHHHHHhC--C-CEEEECCC
Confidence 99999988 7999999999999999999999999999988886532 2456778887776654 2 99999999
Q ss_pred CCHHHHHHHHHhCCCEEEEchHHHHHHh---------------------h-----------------cCH-------HHH
Q 018919 269 RRGTDVFKALALGASGIFIGRPVVYSLA---------------------A-----------------EGE-------KGV 303 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~l~~~~---------------------~-----------------~G~-------~gv 303 (349)
+++.|+.|+|++|||+|++||+|+.... + .|. -.+
T Consensus 209 ~~~~di~kALa~GAd~V~iGr~f~~t~Espg~~~~~~~g~~~k~y~Gm~s~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~ 288 (361)
T 3r2g_A 209 KTSGDIVKALAFGADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASREAQEAFLGQMHEWKTAEGVATEVPFKENP 288 (361)
T ss_dssp CSHHHHHHHHHTTCSEEEESGGGTTBTTSSSCEEECTTSCEEEEESCCHHHHHHHHHTTCCSTTCCSCCCCEEEECBCCH
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhCCccCCceeEEecCCeEEEEEecCCCcchhhhhhccccccccCCcceeecCCCCCH
Confidence 9999999999999999999999863211 0 010 137
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 304 RRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 304 ~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
.+++..+...|+..|.++|+.+|+||+..
T Consensus 289 ~~~~~~~~~glr~~m~y~G~~~i~~l~~~ 317 (361)
T 3r2g_A 289 DGIIADIIGGLRSGLTYAGADSISELQRK 317 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhcCcccHHHHHhC
Confidence 88999999999999999999999999644
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=266.26 Aligned_cols=258 Identities=20% Similarity=0.238 Sum_probs=194.4
Q ss_pred hhcccccccccccC-CCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l~-~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||+|.|+|+.+. +++++|++|+|+ |++++.||++|||++++ +..++.+++++|..++++ ++.++|++.
T Consensus 10 ~~fd~v~l~p~~~~~~~~~vdlst~l~~g~~l~~Pii~Apm~~~~------~~ela~a~a~aGglg~i~--~~~s~e~~~ 81 (404)
T 1eep_A 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIH--KNMSIEAQR 81 (404)
T ss_dssp CCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTC------SHHHHHHHHHHTSEEEEC--SSSCHHHHH
T ss_pred CCcccEEEccCCCCcCccccccceeccCCcccCCCEEeCCCCCCC------CHHHHHHHHHCCCEEEEC--CCCCHHHHH
Confidence 57999999999987 789999999999 99999999999998743 456777788889888886 345676653
Q ss_pred hhCC-----C----------------------------------------c-----------eEEEEeecCChhHHHHHH
Q 018919 119 STGP-----G----------------------------------------I-----------RFFQLYVYKDRNVVAQLV 142 (349)
Q Consensus 119 ~~~~-----~----------------------------------------~-----------~~~Ql~~~~~~~~~~~~~ 142 (349)
+..+ . + ....+. .+. ...+.+
T Consensus 82 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~--~~~-~~~~~a 158 (404)
T 1eep_A 82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVS--IDI-DTIERV 158 (404)
T ss_dssp HHHHHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEEC--SCT-THHHHH
T ss_pred HHHHHHHhhccCCCceeccccccccccccccCCCCCHHHHHHHHHHhhhcchhhhhcccCceEEEEeC--CCh-hHHHHH
Confidence 3211 0 0 011111 011 234566
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHH
Q 018919 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARI 220 (349)
Q Consensus 143 ~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~ 220 (349)
+.+.++|+++++++..+ .++.. |+.++++|+.+ ++||+++.+.+.++|+.
T Consensus 159 ~~~~~~G~d~i~i~~~~----------------------------g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~ 210 (404)
T 1eep_A 159 EELVKAHVDILVIDSAH----------------------------GHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALD 210 (404)
T ss_dssp HHHHHTTCSEEEECCSC----------------------------CSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHH
T ss_pred HHHHHCCCCEEEEeCCC----------------------------CChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHH
Confidence 67777888888764321 13455 88999999999 89999999999999999
Q ss_pred HHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH-
Q 018919 221 AVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV- 292 (349)
Q Consensus 221 a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~-~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l- 292 (349)
+.++|+|+|+++.++|.. ...+.+.++.+.++.+.++ .++|||++|||++++|+.|++++|||+|++||+|+
T Consensus 211 a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~ 290 (404)
T 1eep_A 211 LISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAG 290 (404)
T ss_dssp HHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHT
T ss_pred HHhcCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhc
Confidence 999999999996544431 1234557788888887654 37999999999999999999999999999999994
Q ss_pred -------------------HHHhh-------------------------cCHHH-------HHHHHHHHHHHHHHHHHHc
Q 018919 293 -------------------YSLAA-------------------------EGEKG-------VRRVLEMLREEFELAMALS 321 (349)
Q Consensus 293 -------------------~~~~~-------------------------~G~~g-------v~~~l~~l~~el~~~m~~~ 321 (349)
++++. .|.++ |.++++.+.+||+..|.++
T Consensus 291 ~~e~~~~~~~~~g~~~k~~~g~~~~g~~~~g~~~~~~~g~~~~~~~l~~~g~~~~v~~~~~v~~~~~~l~~el~~~m~~~ 370 (404)
T 1eep_A 291 TKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYL 370 (404)
T ss_dssp BTTSSSCEEEETTEEEEC------------------------------------CEECCBCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchhhhCCeEEeecCCCCCHHHHhhccccchhcccccccccccCceeEEeccCCccHHHHHHHHHHHHHHHHHHh
Confidence 44432 22333 8899999999999999999
Q ss_pred CCCChhhhcccceecc
Q 018919 322 GCRSLKEITRDHIVTE 337 (349)
Q Consensus 322 G~~~i~~l~~~~l~~~ 337 (349)
|+++++||++..+..+
T Consensus 371 G~~~i~~l~~~~~~~~ 386 (404)
T 1eep_A 371 GAATISDLKINSKFVK 386 (404)
T ss_dssp TCSSHHHHHHSCCEEE
T ss_pred CCCCHHHHhhcCcEEE
Confidence 9999999998766543
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=224.48 Aligned_cols=251 Identities=20% Similarity=0.261 Sum_probs=189.6
Q ss_pred hhccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|+.- ...+++|++|+|. ++.+..||++|||++.+ +..||.++++.|...++.. ..+++++.
T Consensus 13 ~~fddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Pii~apM~~vt------~~~lA~avA~~GGlgii~~--~~s~e~~~ 84 (361)
T 3khj_A 13 LTFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTVT------EHLMAVGMARLGGIGIIHK--NMDMESQV 84 (361)
T ss_dssp CCGGGEEECCCCBCCCGGGCCCCEESSSSCEESSSEEECSSTTTC------SHHHHHHHHHTTCEEEECS--SSCHHHHH
T ss_pred CCcceEEEECCCCCCCHHHccCceecccccccCCCEEeecCCCCC------cHHHHHHHHHcCCCeEEec--CCCHHHHH
Confidence 4799999999832 2456899999997 78999999999998764 5589998787777767753 34555432
Q ss_pred ----hh--CC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc
Q 018919 119 ----ST--GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (349)
Q Consensus 119 ----~~--~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (349)
+. .+ .+..+++... + .+.++.+.++|++.|.|+... .++.
T Consensus 85 ~~I~~vk~~~~~pvga~ig~~-~----~e~a~~l~eaGad~I~ld~a~----------------------------G~~~ 131 (361)
T 3khj_A 85 NEVLKVKNSGGLRVGAAIGVN-E----IERAKLLVEAGVDVIVLDSAH----------------------------GHSL 131 (361)
T ss_dssp HHHHHHHHTTCCCCEEEECTT-C----HHHHHHHHHTTCSEEEECCSC----------------------------CSBH
T ss_pred HHHHHHHhccCceEEEEeCCC-H----HHHHHHHHHcCcCeEEEeCCC----------------------------CCcH
Confidence 22 12 3456666542 2 567888899999988765421 1233
Q ss_pred h-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhcC-CCcEE
Q 018919 192 M-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 263 (349)
Q Consensus 192 ~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~~-~ipvi 263 (349)
. .+.++++++.+++||+++.+.+++.++.+.++|+|+|+++.++|.. ...+.+++..+.++++.++. ++|||
T Consensus 132 ~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVI 211 (361)
T 3khj_A 132 NIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPII 211 (361)
T ss_dssp HHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEE
Confidence 3 5779999998899999999999999999999999999996544421 12356778888888665422 79999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhhc--------------C-------HH-
Q 018919 264 LDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAE--------------G-------EK- 301 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~~--------------G-------~~- 301 (349)
++|||++++|+.|++++|||+|++||+|+ |++++. + ++
T Consensus 212 A~GGI~~~~di~kala~GAd~V~vGs~~~~t~Esp~~~~~~~g~~~k~y~gm~s~~a~~~~~~~~y~~~~~~~~~~~~eg 291 (361)
T 3khj_A 212 ADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYFQEKRPENKMVPEG 291 (361)
T ss_dssp EESCCCSHHHHHHHHHHTCSEEEESTTTTTBTTSSCEEEEETTEEEEEC-------------------------------
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEChhhhcCCcCCcchhhcCCeEEEEeeccchHHHHhccchhhhhcccccccccCCCc
Confidence 99999999999999999999999999884 333210 1 12
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 302 ---------GVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 302 ---------gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
.+++++..+...|+..|.++|+.+|+||+..
T Consensus 292 ~~~~v~~~g~~~~~~~~~~~gl~~~~~~~g~~~~~~~~~~ 331 (361)
T 3khj_A 292 IEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKK 331 (361)
T ss_dssp --CEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred cEEeCCCCCCHHHHHHHHHHHHHHhhhhcCCccHHHHHhC
Confidence 2678899999999999999999999999754
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-26 Score=222.37 Aligned_cols=256 Identities=20% Similarity=0.277 Sum_probs=185.2
Q ss_pred hhccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|... ...+++|++|.|. .+.+..||+.|||++.+ . ..||.+.+++|..++++. ..++|+++
T Consensus 10 ~t~ddvll~P~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~M~~Vs--~----~~lA~Ava~aGGlGvi~~--~~~~e~~~ 81 (400)
T 3ffs_A 10 LTFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTVT--E----HLMAVGMARLGGIGIIHK--NMDMESQV 81 (400)
T ss_dssp CCGGGEEECCCCBCSCGGGCCCCEESSSSCEESSSEEECSCTTTC--S----SHHHHHHHTTTCEEEECS--SSCHHHHH
T ss_pred CCceeEEEecCCCccCHHHccCccchhcccCCCCCEEeCCCCCcC--c----HHHHHHHHHCCCEEEeCC--CCCHHHHH
Confidence 3699999999754 3457899999996 57889999999998654 3 489999999999999975 45666543
Q ss_pred hh----C---C----CceE--EEEe------------------ecC--Chh-----------HHHHHHHHHHHcCCCEEE
Q 018919 119 ST----G---P----GIRF--FQLY------------------VYK--DRN-----------VVAQLVRRAERAGFKAIA 154 (349)
Q Consensus 119 ~~----~---~----~~~~--~Ql~------------------~~~--~~~-----------~~~~~~~~~~~~G~~~i~ 154 (349)
+. . . .|+- .+|+ +.. |.. ...+.++.+.++|++.|+
T Consensus 82 ~~i~~vk~~~~g~~~~P~~~~~nL~~~~~~~~~~~~~~~~~~~p~~~~d~~g~l~v~~~v~~~~~e~~~~lveaGvdvIv 161 (400)
T 3ffs_A 82 NEVLKVKNWISNLEKNESTPDQNLDKESTDGKDTKSNNNIDAYSNENLDNKGRLRVGAAIGVNEIERAKLLVEAGVDVIV 161 (400)
T ss_dssp HHHHHHHCCC-------------------------------CCTTCCBCTTSSBCCEEEECCC-CHHHHHHHHHTCSEEE
T ss_pred HHHHHHHhhccCcccCCCCccccccCCCCCHHHHHHHHHhhhCcchhhccccceeEEeecCCCHHHHHHHHHHcCCCEEE
Confidence 21 1 1 1111 1221 100 000 004667777888988887
Q ss_pred EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEec
Q 018919 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 155 i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
++... .++.. .+.++++++.+++||+++.+.+.++|+.+.++|+|+|++++
T Consensus 162 ldta~----------------------------G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aGAD~I~vG~ 213 (400)
T 3ffs_A 162 LDSAH----------------------------GHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGI 213 (400)
T ss_dssp ECCSC----------------------------CSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTTCSEEEECC
T ss_pred EeCCC----------------------------CCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHcCCCEEEEeC
Confidence 64321 12323 57899999988999999999999999999999999999954
Q ss_pred CCCC-----CC-CCchhhHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------
Q 018919 234 HGAR-----QL-DYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV-------------- 292 (349)
Q Consensus 234 ~gg~-----~~-~~~~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l-------------- 292 (349)
.+|. .. ..+.+++..+.++++.++. ++|||++|||+++.|+.|+|++||++||+|++|+
T Consensus 214 g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t~Es~~~~~~~~g 293 (400)
T 3ffs_A 214 GPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGD 293 (400)
T ss_dssp ---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTBTTSSCCEEESSS
T ss_pred CCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcCCCCCchhhhcCC
Confidence 3331 11 2356788999999887643 7999999999999999999999999999999884
Q ss_pred ------HHHhhc--------------C-------HHH----------HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 293 ------YSLAAE--------------G-------EKG----------VRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 293 ------~~~~~~--------------G-------~~g----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
|++++. + ++| +.+++..+...|+..|.++|+.+|+||+..
T Consensus 294 ~~~k~y~Gm~s~~am~~~~~~ry~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~i~el~~~ 370 (400)
T 3ffs_A 294 TVYKYYRGMGSVGAMKSGSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKK 370 (400)
T ss_dssp SEEEC-----------------------------------CEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred eeeeeecCcchHHHHhccccchhhcccccccccCCCCcEEecCCCCCHHHHHHHHHHHHHHhhhhcCcccHHHHHhC
Confidence 444310 0 122 678899999999999999999999999754
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=221.74 Aligned_cols=255 Identities=20% Similarity=0.252 Sum_probs=190.7
Q ss_pred hhccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|..- .+.+++|++|+|. .+.+..||+.|||++.+ +..||.++++.|...++.. +.++++..
T Consensus 14 ~~fddv~lvp~~~~~~~~~vdl~t~lt~~~~l~~Pii~apM~~vs------~~~lA~avA~aGGlg~i~~--~~s~e~~~ 85 (366)
T 4fo4_A 14 LTFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVT------EARLAIALAQEGGIGFIHK--NMSIEQQA 85 (366)
T ss_dssp CCGGGEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHTTCEEEECS--SSCHHHHH
T ss_pred CCcceEEEECCCCCCChhhcccceecccccccCCCEEeCCCCCCC------hHHHHHHHHHcCCceEeec--CCCHHHHH
Confidence 3699999999733 2456899999997 68899999999998754 5689999888888888763 34565532
Q ss_pred h----hCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-
Q 018919 119 S----TGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM- 192 (349)
Q Consensus 119 ~----~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~- 192 (349)
+ ... +++.+.+-...++ ...+.++.+.++|++.|+|+... .++..
T Consensus 86 ~~i~~vk~~~~l~vga~vg~~~-~~~~~~~~lieaGvd~I~idta~----------------------------G~~~~~ 136 (366)
T 4fo4_A 86 AQVHQVKISGGLRVGAAVGAAP-GNEERVKALVEAGVDVLLIDSSH----------------------------GHSEGV 136 (366)
T ss_dssp HHHHHHHTTTSCCCEEECCSCT-TCHHHHHHHHHTTCSEEEEECSC----------------------------TTSHHH
T ss_pred HHHHHHHhcCceeEEEEeccCh-hHHHHHHHHHhCCCCEEEEeCCC----------------------------CCCHHH
Confidence 2 111 2222333221222 24567888899999998875421 01223
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhc-CCCcEEE
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GRIPVFL 264 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~-~~ipvia 264 (349)
.+.++++++.+ ++||+++.+.++++|+.+.++|+|+|+++..+|.. ...+.+++..+.++++.++ .++|||+
T Consensus 137 ~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA 216 (366)
T 4fo4_A 137 LQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIA 216 (366)
T ss_dssp HHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEE
T ss_pred HHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEE
Confidence 56799999988 89999999999999999999999999995333321 1245678888888887643 2799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHHH--------------------HHhh-----c---------C-------HH--
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-----E---------G-------EK-- 301 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l~--------------------~~~~-----~---------G-------~~-- 301 (349)
+|||+++.|+.|+|++||++|++|++|+. ++++ + + ++
T Consensus 217 ~GGI~~~~di~kala~GAd~V~vGs~f~~t~Esp~~~~~~~g~~~k~y~gm~s~~am~~~~~~ry~~~~~~~~~~~~eg~ 296 (366)
T 4fo4_A 217 DGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAADKLVPEGI 296 (366)
T ss_dssp ESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHCC---------------CCCSBC
T ss_pred eCCCCCHHHHHHHHHcCCCEEEEChHhhcCCCCCchhhhhCCceeEEeeccccHHHHhcccccchhccccccccccCCCc
Confidence 99999999999999999999999998852 2210 0 0 01
Q ss_pred --------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 302 --------GVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 302 --------gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
.+++++..+...|+..|.++|+.+|+||++.
T Consensus 297 ~~~v~~~g~~~~~~~~~~~glr~~~~y~g~~~~~~~~~~ 335 (366)
T 4fo4_A 297 EGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTK 335 (366)
T ss_dssp EEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHHhhhccCcccHHHHHhC
Confidence 2778999999999999999999999999854
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=211.43 Aligned_cols=241 Identities=18% Similarity=0.180 Sum_probs=183.6
Q ss_pred CCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCC-C--------------------------C
Q 018919 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW-S--------------------------T 111 (349)
Q Consensus 59 ~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~-~--------------------------~ 111 (349)
+|++++++|+++++||++|++.. +. +..+.+.+.+.|+.+++..+ + +
T Consensus 2 ~dl~~~i~g~~l~nPi~~Aag~~----~~--~~~~~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~ 75 (314)
T 2e6f_A 2 MCLKLNLLDHVFANPFMNAAGVL----CS--TEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPN 75 (314)
T ss_dssp CCCCEEETTEEESSSEEECTTSS----CS--SHHHHHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCB
T ss_pred CCcceEECCEecCCCcEECCCCC----CC--CHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCC
Confidence 58999999999999999998542 12 33556778999988765422 1 1
Q ss_pred CCHH----HHHhh-C-C-CceEEEEeecCChhHHHHHHHHHHHcCCC---EEEEecCCCCCCchhHHhhhhcCCCCcCcc
Q 018919 112 SSVE----EVAST-G-P-GIRFFQLYVYKDRNVVAQLVRRAERAGFK---AIALTVDTPRLGRREADIKNRFTLPPFLTL 181 (349)
Q Consensus 112 ~~~e----~i~~~-~-~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~---~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~ 181 (349)
...+ ++... . + .+.++|+.. .+.+...+.+++++++|++ ++++|+.||.. .+.+
T Consensus 76 ~g~~~~~~~~~~~~~~~~~p~~~~i~g-~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~-~g~~-------------- 139 (314)
T 2e6f_A 76 LGFDFYLKYASDLHDYSKKPLFLSISG-LSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV-PGKP-------------- 139 (314)
T ss_dssp SCHHHHHHHHHHTCCTTTCCEEEEECC-SSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS-TTCC--------------
T ss_pred cCHHHHHHHHHHHhhcCCCcEEEEeCC-CCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC-CCch--------------
Confidence 1122 23322 2 2 578889875 5778888999999999999 99999999864 1110
Q ss_pred cccCCCCCCch-HHHHHHHHHhcCCcEEEEEec--CHHH----HHHHHHcC-CCEEEEecCCCC--CCC-----------
Q 018919 182 KNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL--TAED----ARIAVQAG-AAGIIVSNHGAR--QLD----------- 240 (349)
Q Consensus 182 ~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~--~~~~----a~~a~~~G-~d~I~v~~~gg~--~~~----------- 240 (349)
.+ ..+++. ++.++++|+.+++||++|... +.++ ++.+.++| +|+|+++|+.++ ..+
T Consensus 140 -~~--g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~ 216 (314)
T 2e6f_A 140 -QV--AYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPK 216 (314)
T ss_dssp -CG--GGSHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGG
T ss_pred -hh--cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccC
Confidence 00 124555 788999999999999999874 4444 78889999 999999886521 000
Q ss_pred ------Cc----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHH
Q 018919 241 ------YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 310 (349)
Q Consensus 241 ------~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l 310 (349)
.| +..++.+.++++.+ .++|||++|||++++|+.++|++|||+|++||++++ +|+ .+++.+
T Consensus 217 ~~~gG~sg~~~~p~~~~~i~~v~~~~-~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~----~~p----~~~~~i 287 (314)
T 2e6f_A 217 QGFGGLGGKYILPTALANVNAFYRRC-PDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQE----EGP----GIFTRL 287 (314)
T ss_dssp GGEEEEESGGGHHHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHH----HCT----THHHHH
T ss_pred cCCCccCcccccHHHHHHHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHh----cCc----HHHHHH
Confidence 12 23468888888887 579999999999999999999999999999999996 245 378899
Q ss_pred HHHHHHHHHHcCCCChhhhcccc
Q 018919 311 REEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 311 ~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
.++++.+|...|+++++|+++..
T Consensus 288 ~~~l~~~~~~~g~~~i~~~~g~~ 310 (314)
T 2e6f_A 288 EDELLEIMARKGYRTLEEFRGRV 310 (314)
T ss_dssp HHHHHHHHHHHTCCSSTTTTTCC
T ss_pred HHHHHHHHHHcCCCCHHHHhchH
Confidence 99999999999999999998764
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=211.18 Aligned_cols=250 Identities=16% Similarity=0.101 Sum_probs=180.9
Q ss_pred ccccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCCC-----------------
Q 018919 50 PRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST----------------- 111 (349)
Q Consensus 50 p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~~----------------- 111 (349)
|+.-..+++.|++++++|++|++||++|+= ..+ .+....+.+...|..+++ .+.+.
T Consensus 26 ~~~~~~~~~~~L~~~~~Gl~~~NPv~lAAG-~~~-----~~~e~~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~~~ 99 (354)
T 4ef8_A 26 GGQQMGRGSMSLQVNLLNNTFANPFMNAAG-VMC-----TTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLG 99 (354)
T ss_dssp --------CCCCCEEETTEEESSSEEECTT-SSC-----SSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTE
T ss_pred chhhcCCCCCCcceEECCEECCCCCEeccC-CCC-----CCHHHHHHHHHcCCCeEEeCcccCcccCCCCCCcEEecchh
Confidence 444456788999999999999999999982 211 245677888888877654 22110
Q ss_pred ---------CCHH----HHHhhC--C-CceEEEEeecCChhHHHHHHHHHH---HcCCCEEEEecCCCCCCchhHHhhhh
Q 018919 112 ---------SSVE----EVASTG--P-GIRFFQLYVYKDRNVVAQLVRRAE---RAGFKAIALTVDTPRLGRREADIKNR 172 (349)
Q Consensus 112 ---------~~~e----~i~~~~--~-~~~~~Ql~~~~~~~~~~~~~~~~~---~~G~~~i~i~~d~p~~g~r~~d~~~~ 172 (349)
..++ ++.+.. + .+.++||+. .+++...+.+++++ +.|+++|+||+.||..
T Consensus 100 ~iN~~G~~n~G~~~~~~~l~~~~~~~~~pvivsI~G-~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~---------- 168 (354)
T 4ef8_A 100 SINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMSG-LSMRENVEMCKRLAAVATEKGVILELNLSCPNV---------- 168 (354)
T ss_dssp EEECCCCCBCCHHHHHHHHHHTCCTTTCCEEEEECC-SSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCS----------
T ss_pred hhccCCCCCcCHHHHHHHHHHHhhcCCCcEEEEecc-CCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCC----------
Confidence 1222 333322 2 578899976 57888888888888 5799999999999963
Q ss_pred cCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC--HHH----HHHHHHcC-CCEEEEecCC---------
Q 018919 173 FTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT--AED----ARIAVQAG-AAGIIVSNHG--------- 235 (349)
Q Consensus 173 ~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~--~~~----a~~a~~~G-~d~I~v~~~g--------- 235 (349)
| + .+.+ ..+++. .+.++++++.+++||++|+... .++ ++.+.++| +|+|+++|+.
T Consensus 169 ---~-g--g~~l--~~~~e~~~~il~av~~~~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~ 240 (354)
T 4ef8_A 169 ---P-G--KPQV--AYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAE 240 (354)
T ss_dssp ---T-T--SCCG--GGSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETT
T ss_pred ---C-C--chhh--ccCHHHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeecc
Confidence 1 1 0111 135566 7889999999999999999854 222 34455887 9999987753
Q ss_pred -CC------CCCC---c----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHH
Q 018919 236 -AR------QLDY---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 301 (349)
Q Consensus 236 -g~------~~~~---~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~ 301 (349)
.+ +..+ | +.+++.+.++++.. .++|||++|||++++|+.+++++|||+||+||++++ +|+
T Consensus 241 ~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~-~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~----~GP- 314 (354)
T 4ef8_A 241 TESVVIKPKQGFGGLGGRYVLPTALANINAFYRRC-PGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQE----EGP- 314 (354)
T ss_dssp TTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHC-TTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHH----HCT-
T ss_pred CCccccccccccCCCCCCCCchHHHHHHHHHHHhC-CCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHH----hCH-
Confidence 11 0111 2 34678899988873 479999999999999999999999999999999987 355
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 302 GVRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 302 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
.+++.+.++|+.+|...|+.+++|+++..
T Consensus 315 ---~~~~~i~~~l~~~m~~~G~~si~el~G~~ 343 (354)
T 4ef8_A 315 ---SIFERLTSELLGVMAKKRYQTLDEFRGKV 343 (354)
T ss_dssp ---THHHHHHHHHHHHHHHHTCCSGGGTTTCC
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 36788999999999999999999999764
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=209.24 Aligned_cols=240 Identities=19% Similarity=0.182 Sum_probs=182.0
Q ss_pred cceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCC-CC------C--------------------
Q 018919 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS-TS------S-------------------- 113 (349)
Q Consensus 61 ~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~-~~------~-------------------- 113 (349)
++++++|+++++||++|+... +. +..+.+.+.+.|+.+++..+. .. .
T Consensus 2 l~~~i~g~~l~npv~~Aag~~----~~--~~~~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g 75 (311)
T 1jub_A 2 LNTTFANAKFANPFMNASGVH----CM--TIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG 75 (311)
T ss_dssp CCEEETTEEESSSEEECTTSS----CS--SHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred CceEECCEEcCCCcEECCCCC----CC--CHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcc
Confidence 689999999999999997321 22 457778899999888764331 11 0
Q ss_pred HH----HHHh---hC--CCceEEEEeecCChhHHHHHHHHHHHcCCC-EEEEecCCCCCCchhHHhhhhcCCCCcCcccc
Q 018919 114 VE----EVAS---TG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFK-AIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (349)
Q Consensus 114 ~e----~i~~---~~--~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~-~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (349)
.+ ++.. .. ..+.++|+.. .+.+...+.+++++++|++ +|++|++||.. .+.+ .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~p~~~~i~g-~~~~~~~~~a~~~~~~g~d~~iein~~~P~~-~g~~---------------~ 138 (311)
T 1jub_A 76 FDYYLDYVLKNQKENAQEGPIFFSIAG-MSAAENIAMLKKIQESDFSGITELNLSCPNV-PGEP---------------Q 138 (311)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCEEEECC-SSHHHHHHHHHHHHHSCCCSEEEEESCCCCS-SSCC---------------C
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcCC-CCHHHHHHHHHHHHhcCCCeEEEEeccCCCC-CCcc---------------c
Confidence 22 2222 22 3567889875 5778888999999999999 99999999864 1110 0
Q ss_pred cCCCCCCch-HHHHHHHHHhcCCcEEEEEecC--HH----HHHHHHHcCCCEEEEecCCC--CCCC--------------
Q 018919 184 FQGLDLGKM-DEDVKWLQTITKLPILVKGVLT--AE----DARIAVQAGAAGIIVSNHGA--RQLD-------------- 240 (349)
Q Consensus 184 ~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~--~~----~a~~a~~~G~d~I~v~~~gg--~~~~-------------- 240 (349)
+ ..+++. ++.++++|+.+++||++|...+ .+ .|+.+.++|+|+|+++|+.+ .+.+
T Consensus 139 ~--g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~ 216 (311)
T 1jub_A 139 L--AYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGF 216 (311)
T ss_dssp G--GGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGE
T ss_pred c--cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCC
Confidence 0 124555 7889999998899999998753 32 27888999999999988641 1111
Q ss_pred ---Cch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHH
Q 018919 241 ---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 241 ---~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~e 313 (349)
.|+ .+++.+.++++.+++++|||++|||++++|+.+++++|||+|++||++++ .|+ .+++.+.++
T Consensus 217 gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~----~~p----~~~~~i~~~ 288 (311)
T 1jub_A 217 GGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK----EGP----AIFDRIIKE 288 (311)
T ss_dssp EEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH----HCT----HHHHHHHHH
T ss_pred CccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHh----cCc----HHHHHHHHH
Confidence 122 24678888887776589999999999999999999999999999999996 245 478899999
Q ss_pred HHHHHHHcCCCChhhhcccc
Q 018919 314 FELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 314 l~~~m~~~G~~~i~~l~~~~ 333 (349)
++.+|...|+++++|+++..
T Consensus 289 l~~~l~~~g~~si~e~~g~~ 308 (311)
T 1jub_A 289 LEEIMNQKGYQSIADFHGKL 308 (311)
T ss_dssp HHHHHHHHTCCSGGGTTTCC
T ss_pred HHHHHHHcCCCCHHHHhChh
Confidence 99999999999999998764
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-25 Score=215.26 Aligned_cols=140 Identities=23% Similarity=0.351 Sum_probs=117.8
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhcC-CCcEEE
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFL 264 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~~-~ipvia 264 (349)
.+.++++|+.+ ++||++..+.+.+.++.++++|||+|.|.-.+|.- ...|.|++.++.+++++.++ .+|||+
T Consensus 310 ~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIA 389 (556)
T 4af0_A 310 IEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIA 389 (556)
T ss_dssp HHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEE
T ss_pred HHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEe
Confidence 78899999988 79999999999999999999999999997655531 23477899999999887643 699999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh-----c---------------------
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA-----E--------------------- 298 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~-----~--------------------- 298 (349)
||||+++.|++|||++|||+||+|+.|- |++++ +
T Consensus 390 DGGI~~sGDi~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~YrGMgS~~Am~~~~~~~~~~~~~~~~~~~~s~d 469 (556)
T 4af0_A 390 DGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKRVKVYRGMGSIEAMEHTQRGSASGKRSILGLDNAATA 469 (556)
T ss_dssp ESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHTTC------------CCSCSSEE
T ss_pred cCCcCcchHHHHHhhcCCCEEEEchhhccccCCCCcEEEECCEEEEeecccccHHHHHhcccCCcccccccccccccchh
Confidence 9999999999999999999999999772 22211 0
Q ss_pred -------------CH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 299 -------------GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 299 -------------G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
|. -.+.+++..+...|+..|.++|+.+|+||+..
T Consensus 470 Ryfq~~~~~~v~EGveg~VpykG~v~~~i~~l~gGlrs~m~y~Ga~~i~el~~~ 523 (556)
T 4af0_A 470 RYFSEADAVKVAQGVSGDVADKGSINKFVPYLFTGLQHSLQDAAIKSVSELHSC 523 (556)
T ss_dssp ECCCBSSSSCBCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred hhcccccccccCCccEEeccCCCcHHHHHHHHHHHHHHhhhccCCCcHHHHHHh
Confidence 00 02788999999999999999999999999864
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-25 Score=238.12 Aligned_cols=279 Identities=19% Similarity=0.149 Sum_probs=198.7
Q ss_pred HHhhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHH
Q 018919 39 NRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE 116 (349)
Q Consensus 39 n~~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~ 116 (349)
...+|+++.+.+..+. +++++++++ ++..||+++||+++.+ +++.+.+||++|++.|+.+.+++.+ .+.++
T Consensus 821 ~~~~~~dl~~~~~~l~~i~~~ev~~~~-----~I~~Pf~isaMS~Gal-S~ea~~aLA~Aa~~aGg~~~tGeGg-~~pe~ 893 (1479)
T 1ea0_A 821 PPMQLRDLLELRSTKAPVPVDEVESIT-----AIRKRFITPGMSMGAL-SPEAHGTLNVAMNRIGAKSDSGEGG-EDPAR 893 (1479)
T ss_dssp CCCSGGGGEEECCSSCCCCGGGSCCHH-----HHHTTEEEEECCBTTB-CHHHHHHHHHHHHHTTCEEECCTTC-CCGGG
T ss_pred CCCchhhhhhccCCCCCCCcccccccc-----cccCCeEecCcccccc-CHHHHHHHHHHHHHcCCeeEcCCCc-cCHHH
Confidence 3456888888877664 345677666 5688999999998755 5678889999999999998888754 34444
Q ss_pred HHhh--C--CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC--------Cchh-HHhhhhcCCCCcCcccc
Q 018919 117 VAST--G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL--------GRRE-ADIKNRFTLPPFLTLKN 183 (349)
Q Consensus 117 i~~~--~--~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~--------g~r~-~d~~~~~~~p~~~~~~~ 183 (349)
.... . ....+.|+.. .........+ ..++.+++.+..-.. +.+. ..+......+.++..-.
T Consensus 894 ~~~~~~g~~~~~~IrQ~as-g~FGVn~~~l-----~~a~~ieIKigQGAKpG~GG~Lp~~kv~~~IA~~R~~~~Gv~lis 967 (1479)
T 1ea0_A 894 FRPDKNGDNWNSAIKQVAS-GRFGVTAEYL-----NQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLIS 967 (1479)
T ss_dssp SSBCTTSCBCCCSEEEECS-SCTTCCHHHH-----TSCSEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCCEEC
T ss_pred hhhccccchhhhhhhhhcC-CCCCcChHHc-----cccchHHHHHhccCCCCcCCCCCHHHHHHHHHHHcCCCCCCCccC
Confidence 3211 1 1224677753 2222222222 467889988843111 1111 11111112233322111
Q ss_pred cC---CCCCCch-HHHHHHHHHhc-CCcEEEEEecC---HHHHHHHHHcCCCEEEEecCC-CCC-------CCCchhhHH
Q 018919 184 FQ---GLDLGKM-DEDVKWLQTIT-KLPILVKGVLT---AEDARIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIM 247 (349)
Q Consensus 184 ~~---~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~---~~~a~~a~~~G~d~I~v~~~g-g~~-------~~~~~~~~~ 247 (349)
.. .+.+++. .+.|+++|+.+ ++||++|++.+ .++|+.+.++|||+|+++|++ |+. .++|.|+..
T Consensus 968 P~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~ 1047 (1479)
T 1ea0_A 968 PPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEM 1047 (1479)
T ss_dssp CSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHH
T ss_pred CCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHH
Confidence 00 1112222 45699999988 89999999863 678999999999999999984 431 235678889
Q ss_pred HHHHHHHHh-----cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh-------------------------
Q 018919 248 ALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA------------------------- 297 (349)
Q Consensus 248 ~l~~i~~~~-----~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~------------------------- 297 (349)
.|+++.+.+ ++++|||++|||+++.|++|+|++||++|++||+|+++++|
T Consensus 1048 aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~a~gc~~~r~Ch~~~CP~Gvatqdp~l~~~ 1127 (1479)
T 1ea0_A 1048 GLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQK 1127 (1479)
T ss_dssp HHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGS
T ss_pred HHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHHHHHHHHHHhhccCCCCCceeEEeCHHHHhh
Confidence 999998875 34799999999999999999999999999999999998753
Q ss_pred --cCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhc
Q 018919 298 --EGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 330 (349)
Q Consensus 298 --~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~ 330 (349)
.|+++|.++++.+.+||+.+|..+|+++++||.
T Consensus 1128 ~~gg~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~ 1162 (1479)
T 1ea0_A 1128 FVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVI 1162 (1479)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHTCSCSGGGT
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHh
Confidence 367899999999999999999999999999994
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=235.35 Aligned_cols=249 Identities=21% Similarity=0.279 Sum_probs=190.9
Q ss_pred CCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCC-------CC-------------
Q 018919 54 IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWS-------TS------------- 112 (349)
Q Consensus 54 ~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~-------~~------------- 112 (349)
..++++|++++++|+++++||++|||++.. +.++++.+.+.|..+++ .+.+ +.
T Consensus 526 ~ev~~v~ls~~~~G~~~~nPv~lAa~~~~~------~~~~~~~~~~~g~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~ 599 (1025)
T 1gte_A 526 TPVDLVDISVEMAGLKFINPFGLASAAPTT------SSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPM 599 (1025)
T ss_dssp CGGGGCCCCEEETTEEESSSEEECSSGGGS------SHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSC
T ss_pred cccccccceeeeccccccCcccccCCCCCC------CHHHHHHHHHCCcCeEEeceecccccccCCCCccEEeccccccc
Confidence 456889999999999999999999997643 55778888888888776 1111 00
Q ss_pred -----------------C-------HHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhH
Q 018919 113 -----------------S-------VEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (349)
Q Consensus 113 -----------------~-------~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~ 167 (349)
. ++++++..| .+.++|++...+.+...+.+++++++|+++|+||++||.. .+.+
T Consensus 600 ~~~~~~~~~n~e~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~-~~~~ 678 (1025)
T 1gte_A 600 YGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG-MGER 678 (1025)
T ss_dssp CSSCCSCEEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC-CC--
T ss_pred cCCchhheeeeccccchhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCC
Confidence 1 123344454 6788888766788888999999999999999999999863 2211
Q ss_pred HhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC----HHHHHHHHHcCCCEEEEecC--------
Q 018919 168 DIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNH-------- 234 (349)
Q Consensus 168 d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~----~~~a~~a~~~G~d~I~v~~~-------- 234 (349)
.. +... ..++++ ++.++++++.+++||++|+..+ .+.|+.+.++|+|+|+++|+
T Consensus 679 ~~----------G~~~---~~~~~~~~~iv~~v~~~~~~Pv~vK~~~~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~ 745 (1025)
T 1gte_A 679 GM----------GLAC---GQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLK 745 (1025)
T ss_dssp -------------SBG---GGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBC
T ss_pred Cc----------cccc---ccCHHHHHHHHHHHHHhhCCceEEEeCCChHHHHHHHHHHHHcCCCEEEEecccccccccc
Confidence 10 0000 135666 7889999999999999999864 35689999999999999873
Q ss_pred ------------CCCCCC--Cchhh----HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 235 ------------GARQLD--YVPAT----IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 235 ------------gg~~~~--~~~~~----~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
|++... .+++. ++.+.++++.+ .++|||++|||++++|+.++|++|||+|+|||++++
T Consensus 746 ~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~-~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~--- 821 (1025)
T 1gte_A 746 ADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARAL-PGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQN--- 821 (1025)
T ss_dssp TTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHS-TTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT---
T ss_pred ccccccccccccccccCCCCCcccchhHHHHHHHHHHHHc-CCCCEEEecCcCCHHHHHHHHHcCCCEEEEeecccc---
Confidence 222111 13332 47888888877 469999999999999999999999999999999985
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 018919 297 AEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 331 (349)
Q Consensus 297 ~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~ 331 (349)
.+. .+++.+.+||+.+|...|+.+++++..
T Consensus 822 -~~~----~~~~~~~~~l~~~l~~~G~~~i~~l~g 851 (1025)
T 1gte_A 822 -QDF----TVIQDYCTGLKALLYLKSIEELQGWDG 851 (1025)
T ss_dssp -SCT----THHHHHHHHHHHHHHHTTCGGGTTSBT
T ss_pred -CCc----cHHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 244 467889999999999999999999986
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.1e-24 Score=205.14 Aligned_cols=244 Identities=19% Similarity=0.202 Sum_probs=173.3
Q ss_pred CCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCCCCC----------------------
Q 018919 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTS---------------------- 112 (349)
Q Consensus 56 ~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~~~~---------------------- 112 (349)
.+.+.++++++|+++++||++|+ |.. ..+ .......+.|..++ +++.+..
T Consensus 79 ~~~~~l~v~~~Gl~f~NPvglAA-G~d----k~~--~~~~~l~~lGfG~vevgtvT~~pq~GNp~PRlfrl~e~~aiiN~ 151 (415)
T 3i65_A 79 NDSIYACTNIKHLDFINPFGVAA-GFD----KNG--VCIDSILKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINS 151 (415)
T ss_dssp CCCGGGCEEETTEEESSSEEECT-TSS----TTC--SSHHHHHTTTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEEC
T ss_pred cccccccEEECCEECCCCCEECC-CCC----CCH--HHHHHHHHcCCCeEEeCcccCCcCCCCCCCeEEeccCCCceeec
Confidence 34566899999999999999998 332 222 33466678887655 3322210
Q ss_pred ------CH----HHHHhh---C-------CCceEEEEeecCC----hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHH
Q 018919 113 ------SV----EEVAST---G-------PGIRFFQLYVYKD----RNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (349)
Q Consensus 113 ------~~----e~i~~~---~-------~~~~~~Ql~~~~~----~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d 168 (349)
.+ +++.+. . ..+..+||..+++ .+...+.++++.+. +++|+||++||...
T Consensus 152 ~GfnN~G~d~~~~~l~~~~~~~~~~~~~~~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~-ad~ieiNiScPNt~----- 225 (415)
T 3i65_A 152 CGFNNMGCDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRY-ADYIAINVSSPNTP----- 225 (415)
T ss_dssp CCSCBCCHHHHHHHHHHHHHHHTTCGGGTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCCC-------
T ss_pred CCCCchhHHHHHHHHHHHHhhccccccccCceEEEEeccccCccccHHHHHHHHHHHHhh-CCEEEEECCCCCCC-----
Confidence 12 222211 0 1346789876542 34445555565555 89999999999631
Q ss_pred hhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh--------------------cCCc-EEEEEecCH------HHHHH
Q 018919 169 IKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI--------------------TKLP-ILVKGVLTA------EDARI 220 (349)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~--------------------~~~p-v~vK~v~~~------~~a~~ 220 (349)
+ .+. +.+++. .+.++++++. .++| |++|+..+. +.|+.
T Consensus 226 ---------G--l~~---lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~ 291 (415)
T 3i65_A 226 ---------G--LRD---NQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADV 291 (415)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHH
T ss_pred ---------C--ccc---ccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCCCCHHHHHHHHHH
Confidence 1 111 246666 5667777765 2689 999998532 45888
Q ss_pred HHHcCCCEEEEecCCCCCCC--------C---c----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 018919 221 AVQAGAAGIIVSNHGARQLD--------Y---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 285 (349)
Q Consensus 221 a~~~G~d~I~v~~~gg~~~~--------~---~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V 285 (349)
+.++|+|+|+++|+...+.+ + | +.+++.+.++++.+++++|||++|||+|++|+.+++++|||+|
T Consensus 292 a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~V 371 (415)
T 3i65_A 292 LLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVC 371 (415)
T ss_dssp HHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEE
T ss_pred HHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 99999999999998654322 2 3 2356889999998877899999999999999999999999999
Q ss_pred EEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 286 FIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 286 ~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
+|||++++. |+. +++.+.++|+.+|...|+++++|+++...
T Consensus 372 qIgra~l~~----GP~----~~~~i~~~L~~~l~~~G~~si~e~~G~~~ 412 (415)
T 3i65_A 372 QLYSCLVFN----GMK----SAVQIKRELNHLLYQRGYYNLKEAIGRKH 412 (415)
T ss_dssp EESHHHHHH----GGG----HHHHHHHHHHHHHHHTTCSSSTTTTTTTC
T ss_pred EEcHHHHhc----CHH----HHHHHHHHHHHHHHHcCCCCHHHHhChhc
Confidence 999999973 553 67889999999999999999999987643
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-24 Score=230.10 Aligned_cols=282 Identities=18% Similarity=0.126 Sum_probs=196.3
Q ss_pred HhhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH
Q 018919 40 RNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (349)
Q Consensus 40 ~~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i 117 (349)
.-.|+++.+.+..+. ++++++.++ .+..||+++||+++.+ .++.+.+||.+|+++|+.+.+++.+. +.+..
T Consensus 839 ~~~~r~l~~~~~~~~~i~~~ev~~~~-----~I~~Pfii~aMS~Gsl-S~ea~~aLA~Aas~aGg~~~tGeGg~-~pe~~ 911 (1520)
T 1ofd_A 839 VTALRDLLDFNADQPAISLEEVESVE-----SIVKRFCTGGMSLGAL-SREAHETLAIAMNRLGAKSNSGEGGE-DVVRY 911 (1520)
T ss_dssp SCSGGGGEEECCSSCCCCGGGSCCHH-----HHHTTEECCCBCTTTS-CHHHHHHHHHHHHHHTCBCEECTTCC-CGGGG
T ss_pred CcchhhhccccCCCCCCCchhhcccc-----cccCceEecCcCcccc-cHHHHHHHHHHHHHcCCceEeCCCCC-CHHHH
Confidence 446788887776554 345666655 5678999999998764 45678899999999999999987643 44443
Q ss_pred H-----------hhCC-----------CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC--------CchhH
Q 018919 118 A-----------STGP-----------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL--------GRREA 167 (349)
Q Consensus 118 ~-----------~~~~-----------~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~--------g~r~~ 167 (349)
. ...| ...+.|+-. .......+... .++.+++.+..-.. +.+..
T Consensus 912 ~~eir~~~~~~~~~~p~~~~~~nG~~~~~~I~Ql~s-g~FGVn~~~l~-----~ad~IeIKi~QGAKpG~GG~Lp~~kV~ 985 (1520)
T 1ofd_A 912 LTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIAS-GRFGVTPEYLM-----SGKQLEIKMAQGAKPGEGGQLPGKKVS 985 (1520)
T ss_dssp SCCCCCCTTSCCTTSTTCCSCCTTCCCCCSEEEECT-TCTTCCHHHHH-----HCSEEEEECCCTTSTTSCCEECGGGCC
T ss_pred HhhhccccccccccccccccccCcchHHHHHHHhcC-CCCccChhhcc-----chHHHHHHHhccCCCCCCCCCCHHHHH
Confidence 2 0111 125678722 11122222221 27888888743211 11110
Q ss_pred -HhhhhcCCCCcCcccccC---CCCCCch-HHHHHHHHHhc-CCcEEEEEecC---HHHHHHHHHcCCCEEEEecCCC-C
Q 018919 168 -DIKNRFTLPPFLTLKNFQ---GLDLGKM-DEDVKWLQTIT-KLPILVKGVLT---AEDARIAVQAGAAGIIVSNHGA-R 237 (349)
Q Consensus 168 -d~~~~~~~p~~~~~~~~~---~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~---~~~a~~a~~~G~d~I~v~~~gg-~ 237 (349)
.+......++++..-... .+.+++. .+.|+++|+.+ ++||++|++.+ .++|+.+.++|||+|+++|++| +
T Consensus 986 ~~iA~~R~~~~Gv~lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~kAGAD~IvVsG~eGGT 1065 (1520)
T 1ofd_A 986 EYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGT 1065 (1520)
T ss_dssp HHHHHHHTSCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCC
T ss_pred HHHHHHcCCCCCCCeeCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHHHcCCCEEEEeCCCCcc
Confidence 111111223332221110 1122222 45699999988 89999999963 5789999999999999999954 3
Q ss_pred C-------CCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh--------
Q 018919 238 Q-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA-------- 297 (349)
Q Consensus 238 ~-------~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~-------- 297 (349)
. .++|.|+...|+++.+++ ++++|||++|||+++.|++|||++||++|++||+|+++++|
T Consensus 1066 gasp~~~~~~~GlPt~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~algc~~~r~Ch~ 1145 (1520)
T 1ofd_A 1066 GASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHT 1145 (1520)
T ss_dssp SSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGG
T ss_pred CCCcchhhcCCchhHHHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHHHHHHHHHHHhccC
Confidence 1 235677888999998875 34799999999999999999999999999999999998754
Q ss_pred -------------------cCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhc-ccce
Q 018919 298 -------------------EGEKGVRRVLEMLREEFELAMALSGCRSLKEIT-RDHI 334 (349)
Q Consensus 298 -------------------~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~-~~~l 334 (349)
.|+++|.++++.+.+||+.+|..+|+++++||. +..+
T Consensus 1146 ~~CP~Gvatqdp~L~~~~~gg~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~gr~dl 1202 (1520)
T 1ofd_A 1146 NNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDL 1202 (1520)
T ss_dssp TCCTTSSSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTTCGGG
T ss_pred CCCCceeEeeCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhCcceE
Confidence 267899999999999999999999999999994 4443
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-23 Score=199.95 Aligned_cols=251 Identities=19% Similarity=0.205 Sum_probs=172.0
Q ss_pred ccccccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCCC---------------
Q 018919 48 FRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------- 111 (349)
Q Consensus 48 l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~~--------------- 111 (349)
+.|+. ...++.+++++++|+++++||++|+ |.. ..+ ...+...+.|..++. ++.+.
T Consensus 38 ~~~~~-~~~~~~~L~~~~~Gl~~~NPvglAa-G~~----~~~--~~~~~~~~~g~G~v~~ktvt~~pq~GNp~PR~~~~~ 109 (367)
T 3zwt_A 38 LLPRA-RFQDSDMLEVRVLGHKFRNPVGIAA-GFD----KHG--EAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLP 109 (367)
T ss_dssp CC----CCCCCGGGCEEETTEEESSSEEECT-TSS----TTS--SSHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEEG
T ss_pred ccccc-ccCCCCCCcEEECCEEcCCCCEeCC-CcC----CCH--HHHHHHHhcCcCeEEeCCccCCCCCCCCCCeEEEec
Confidence 44542 2356789999999999999999996 322 222 223444456776653 22211
Q ss_pred -------------CCH----HHHHhh---------CCCceEEEEeecCC-hhHHHHHHHHHHHc--CCCEEEEecCCCCC
Q 018919 112 -------------SSV----EEVAST---------GPGIRFFQLYVYKD-RNVVAQLVRRAERA--GFKAIALTVDTPRL 162 (349)
Q Consensus 112 -------------~~~----e~i~~~---------~~~~~~~Ql~~~~~-~~~~~~~~~~~~~~--G~~~i~i~~d~p~~ 162 (349)
..+ +++.+. ...+.++||..+.+ .+...+.++.++.. ++++|+||++||..
T Consensus 110 ~~~~~iN~~G~~N~G~~~~~~~l~~~~~~~~~~~~~~~pv~vniggn~~t~~~~~dy~~~~~~~~~~ad~ielNisCPn~ 189 (367)
T 3zwt_A 110 EDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNT 189 (367)
T ss_dssp GGTEEEECCCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTS
T ss_pred CccceeeccCCCCccHHHHHHHHHHHhhhccccccCCceEEEEEecCCCCCcCHHHHHHHHHHHhhhCCEEEEECCCCCC
Confidence 011 222221 12468899976432 12334444444333 58999999999964
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh-------cCCcEEEEEecCH------HHHHHHHHcCCCE
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI-------TKLPILVKGVLTA------EDARIAVQAGAAG 228 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~-------~~~pv~vK~v~~~------~~a~~a~~~G~d~ 228 (349)
. + .+. +.+++. .+.++.+++. +++||++|+..+. +.|+.+.++|+|+
T Consensus 190 ~--------------G--~~~---l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadg 250 (367)
T 3zwt_A 190 A--------------G--LRS---LQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDG 250 (367)
T ss_dssp T--------------T--GGG---GGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCE
T ss_pred C--------------C--ccc---cCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCE
Confidence 1 1 111 234444 4556766653 6899999998532 4578899999999
Q ss_pred EEEecCC-CCC---------CCC---ch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 229 IIVSNHG-ARQ---------LDY---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 229 I~v~~~g-g~~---------~~~---~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
|+++|+. ++. ..+ |+ .+++.+.++++.+++++|||++|||+|++|+.+++++|||+||+||++
T Consensus 251 i~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~ 330 (367)
T 3zwt_A 251 LIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTAL 330 (367)
T ss_dssp EEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred EEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 9999874 221 112 22 256889999998877899999999999999999999999999999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 292 VYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
++. |+ .++..+.++|+.+|...|+++++|+.+..
T Consensus 331 l~~----gP----~~~~~i~~~l~~~m~~~G~~~i~e~~G~~ 364 (367)
T 3zwt_A 331 TFW----GP----PVVGKVKRELEALLKEQGFGGVTDAIGAD 364 (367)
T ss_dssp HHH----CT----HHHHHHHHHHHHHHHHTTCSSHHHHTTGG
T ss_pred Hhc----Cc----HHHHHHHHHHHHHHHHcCCCCHHHhhCcc
Confidence 873 55 36788999999999999999999998764
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-23 Score=197.99 Aligned_cols=242 Identities=15% Similarity=0.153 Sum_probs=179.7
Q ss_pred CCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCCC------------------------
Q 018919 58 KIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS------------------------ 112 (349)
Q Consensus 58 ~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~~------------------------ 112 (349)
..|++++++|+++++||++|+ +..+ .+....+.+...|..+++. +.+..
T Consensus 35 m~~L~~~~~Gl~~~NPv~lAa-G~~~-----~~~e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~ 108 (345)
T 3oix_A 35 MVSTHTTIGSFDFDNCLMNAA-GVYC-----MTREELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLP 108 (345)
T ss_dssp -CCCCEEETTEEESCSEEECT-TSSC-----SSHHHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCC
T ss_pred cCCcCeEECCEECCCCCEEcC-CCCC-----CCHHHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecccchhccCCCC
Confidence 468999999999999999996 2211 1346778888999877653 22110
Q ss_pred --CH----HHHHhh---C-CCceEEEEeecCChhHHHHHHHHHHHcCCC-EEEEecCCCCCCchhHHhhhhcCCCCcCcc
Q 018919 113 --SV----EEVAST---G-PGIRFFQLYVYKDRNVVAQLVRRAERAGFK-AIALTVDTPRLGRREADIKNRFTLPPFLTL 181 (349)
Q Consensus 113 --~~----e~i~~~---~-~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~-~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~ 181 (349)
.+ +++.+. . ..+.++||.. .+++...+.+++++++|++ +|+||+.||.. | + .
T Consensus 109 n~G~~~~~~~l~~~~~~~~~~pvivsI~g-~~~~d~~~~a~~l~~~g~~d~ielNisCPn~-------------~-G--~ 171 (345)
T 3oix_A 109 NLGINYYLDYVTELQKQPDSKNHFLSLVG-MSPEETHTILXMVEASKYQGLVELNLSCPNV-------------P-G--X 171 (345)
T ss_dssp BSCHHHHHHHHHHHHHSTTCCCCEEEECC-SSHHHHHHHHHHHHHSSCCSEEEEECSCCCS-------------T-T--C
T ss_pred ChhHHHHHHHHHHHhhccCCCCEEEEecC-CCHHHHHHHHHHHhccCCCcEEEEecCCCCc-------------C-C--c
Confidence 12 233331 2 2678899986 6788888999999989988 99999999963 1 1 1
Q ss_pred cccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC---HHHHHHHHHcCCCEEEEecC-----------CCC-CC------
Q 018919 182 KNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT---AEDARIAVQAGAAGIIVSNH-----------GAR-QL------ 239 (349)
Q Consensus 182 ~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~---~~~a~~a~~~G~d~I~v~~~-----------gg~-~~------ 239 (349)
..+ ..+++. .+.++++++.+++||++|+..+ .+.++.+.++|+++|.+.|. ..+ .+
T Consensus 172 ~~l--~~~~e~l~~il~av~~~~~~PV~vKi~p~~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~ 249 (345)
T 3oix_A 172 PQI--AYDFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGF 249 (345)
T ss_dssp CCG--GGCHHHHHHHHHHHTTTCCSCEEEEECCCCCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGE
T ss_pred hhh--cCCHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHhCCCceEEEEeecccccceeeccCcccccccccc
Confidence 111 135566 6779999999999999999853 35577888888877754321 111 11
Q ss_pred --CCchh----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHH
Q 018919 240 --DYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 240 --~~~~~----~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~e 313 (349)
.+|++ +++.+.++++.+++++|||++|||++++|+.+++++|||+|||||+|++. |+ .+++.+.++
T Consensus 250 gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~----gP----~~~~~i~~~ 321 (345)
T 3oix_A 250 GGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQE----GP----QIFKRITKE 321 (345)
T ss_dssp EEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHH----CT----HHHHHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhc----Ch----HHHHHHHHH
Confidence 12333 36788888888766899999999999999999999999999999997763 56 367889999
Q ss_pred HHHHHHHcCCCChhhhccc
Q 018919 314 FELAMALSGCRSLKEITRD 332 (349)
Q Consensus 314 l~~~m~~~G~~~i~~l~~~ 332 (349)
|+.+|...|+++++|+++.
T Consensus 322 L~~~l~~~G~~si~e~~G~ 340 (345)
T 3oix_A 322 LXAIMTEKGYETLEDFRGK 340 (345)
T ss_dssp HHHHHHHHTCCSGGGTTTC
T ss_pred HHHHHHHcCCCCHHHHHhH
Confidence 9999999999999999875
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-23 Score=205.88 Aligned_cols=140 Identities=24% Similarity=0.332 Sum_probs=113.8
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhcC-CCcEEE
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFL 264 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~~-~ipvia 264 (349)
++.++++++.+ ++||++|.+.+.+.|+.+.++|+|+|+++.++|.- ...+.+++..+.++++.++. ++|||+
T Consensus 285 ~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa 364 (511)
T 3usb_A 285 IDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIA 364 (511)
T ss_dssp HHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEE
T ss_pred hhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEE
Confidence 67899999998 48999999999999999999999999996555431 13457788888888776643 699999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHH--------------------HHHHhhc----------------------CHHH
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPV--------------------VYSLAAE----------------------GEKG 302 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~--------------------l~~~~~~----------------------G~~g 302 (349)
+|||+++.|+.|+|++||++|++||+| +|++++. |.++
T Consensus 365 ~GGI~~~~di~kala~GA~~V~vGs~~~~~~es~g~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~~eG~~~ 444 (511)
T 3usb_A 365 DGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKGSKDRYFQEGNKKLVPEGIEG 444 (511)
T ss_dssp ESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCEEECSSSEEEC---------------------------------
T ss_pred eCCCCCHHHHHHHHHhCchhheecHHHhcCccCchhhhhccCeeeeeeeccccHHHHhcccccchhccccccccCCCcEE
Confidence 999999999999999999999999997 3444331 2222
Q ss_pred -------HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 303 -------VRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 303 -------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
+.++++.+..+|+..|.++|+.+++||+..
T Consensus 445 ~~~~~~~~~~~~~~~~~~lr~~m~~~G~~~i~~l~~~ 481 (511)
T 3usb_A 445 RVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLREN 481 (511)
T ss_dssp -CBCCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhC
Confidence 678899999999999999999999999864
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=197.25 Aligned_cols=241 Identities=17% Similarity=0.167 Sum_probs=174.0
Q ss_pred CCCCcceeEcCeecCcceeecc-cccccccCChhhHHHHHHHHHcCCeEEe-------------------------cCC-
Q 018919 57 SKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEYATARAASAAGTIMTL-------------------------SSW- 109 (349)
Q Consensus 57 ~~~d~s~~l~g~~~~~Pi~iAp-m~~~~l~~~~~~~~la~aa~~~G~~~~~-------------------------~~~- 109 (349)
+++|++++++|+++++||++|| |.+.+ . .+.+.+.+.|..+++ +..
T Consensus 3 ~~~~l~~~~~g~~l~npi~~aag~~~~~--~-----~~~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~g 75 (311)
T 1ep3_A 3 ENNRLSVKLPGLDLKNPIIPASGCFGFG--E-----EYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIG 75 (311)
T ss_dssp CCTTTCEEETTEEESSSEEECTTSSTTS--T-----TGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCC
T ss_pred CCCccceEECCEECCCCcEECCCCCCCC--H-----HHHHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCcccccccC
Confidence 6889999999999999999999 64432 1 123443333433332 111
Q ss_pred -CCCCHHHH--------HhhC-CCceEEEEeecCChhHHHHHHHHHHH-cCCCEEEEecCCCCCCchhHHhhhhcCCCCc
Q 018919 110 -STSSVEEV--------ASTG-PGIRFFQLYVYKDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (349)
Q Consensus 110 -~~~~~e~i--------~~~~-~~~~~~Ql~~~~~~~~~~~~~~~~~~-~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~ 178 (349)
.+...++. .+.. ..+.++|++. .+.+...+.++++++ +|+++|+||+.||....+ +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~-~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g------~------ 142 (311)
T 1ep3_A 76 LQNPGLEVIMTEKLPWLNENFPELPIIANVAG-SEEADYVAVCAKIGDAANVKAIELNISCPNVKHG------G------ 142 (311)
T ss_dssp CCBCCHHHHHHTHHHHHHHHCTTSCEEEEECC-SSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGT------T------
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCCcEEEEEcC-CCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCc------h------
Confidence 12233332 2213 3678899986 467777888888888 999999999999852100 0
Q ss_pred CcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec---C-HHHHHHHHHcCCCEEEEec-------CCCCCC-------
Q 018919 179 LTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL---T-AEDARIAVQAGAAGIIVSN-------HGARQL------- 239 (349)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~---~-~~~a~~a~~~G~d~I~v~~-------~gg~~~------- 239 (349)
... ..++++ .+.++++++.+++||++|... + .+.++.+.++|+|+|+++| |+.+..
T Consensus 143 --~~~---g~~~~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~ 217 (311)
T 1ep3_A 143 --QAF---GTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANIT 217 (311)
T ss_dssp --EEG---GGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSC
T ss_pred --hhh---cCCHHHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCC
Confidence 000 124555 788999999889999999863 3 4568999999999999987 221110
Q ss_pred --CCchh----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHH
Q 018919 240 --DYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 240 --~~~~~----~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~e 313 (349)
..++. .++.+.++++.+ ++|||++|||++++|+.+++++|||+|++||+++. +++ .++.+.++
T Consensus 218 ~g~~g~~~~~~~~~~i~~i~~~~--~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~-----~p~----~~~~i~~~ 286 (311)
T 1ep3_A 218 GGLSGPAIKPVALKLIHQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA-----DPF----VCPKIIDK 286 (311)
T ss_dssp EEEESGGGHHHHHHHHHHHHTTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH-----CTT----HHHHHHHH
T ss_pred CcccCccchHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHc-----CcH----HHHHHHHH
Confidence 12232 246677777665 79999999999999999999999999999999986 443 67788999
Q ss_pred HHHHHHHcCCCChhhhcccc
Q 018919 314 FELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 314 l~~~m~~~G~~~i~~l~~~~ 333 (349)
++.+|...|+.+++|+++..
T Consensus 287 l~~~~~~~g~~~~~~~~g~~ 306 (311)
T 1ep3_A 287 LPELMDQYRIESLESLIQEV 306 (311)
T ss_dssp HHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHhChh
Confidence 99999999999999998754
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=202.81 Aligned_cols=140 Identities=23% Similarity=0.390 Sum_probs=115.6
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhcC-CCcEEE
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFL 264 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~~-~ipvia 264 (349)
++.++++++.+ ++||+++.+.+.+.|+.+.++|||+|+++..+|.. ...+.+++..+.+++++++. ++|||+
T Consensus 258 ~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa 337 (490)
T 4avf_A 258 IERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIA 337 (490)
T ss_dssp HHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEE
T ss_pred HHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEE
Confidence 68899999998 78999999999999999999999999996544431 23467889999999987743 799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhhcC------------------------H
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAEG------------------------E 300 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~~G------------------------~ 300 (349)
+|||++++|+.|++++||++||+|++|+ |++++.| +
T Consensus 338 ~GGI~~~~di~kal~~GAd~V~vGs~~~~~~Esp~~~~~~~g~~~k~~~gm~s~~a~~~~~~~~~r~~~~~~~~~~~~~~ 417 (490)
T 4avf_A 338 DGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGEIELFQGRSYKSYRGMGSLGAMSGSQGSSDRYFQDASAGAEKLVP 417 (490)
T ss_dssp ESCCCSHHHHHHHHHHTCSEEEECTTTTTBTTSSSCEEEETTEEEEC---------------------------------
T ss_pred eCCCCCHHHHHHHHHcCCCeeeecHHHhcCCCCCCceEeECCeEeeeecCcccHHHHhhcccccchhhcccccccccccC
Confidence 9999999999999999999999999883 4433200 1
Q ss_pred H----------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 301 K----------GVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 301 ~----------gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
+ .+.+++..+..+|+..|.++|+.+|+||+..
T Consensus 418 eg~~~~v~~~g~~~~~~~~~~~~lr~~~~~~g~~~i~~l~~~ 459 (490)
T 4avf_A 418 EGIEGRVPYKGALSAIVHQLMGGLRAAMGYTGSADIQQMRTQ 459 (490)
T ss_dssp ------CBCCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHS
T ss_pred CCcEEcCCcCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhC
Confidence 2 3568999999999999999999999999865
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-24 Score=205.09 Aligned_cols=241 Identities=20% Similarity=0.211 Sum_probs=178.7
Q ss_pred ecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC------CHHHHHh-hC--CCceEEEEeecCChhHHH
Q 018919 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------SVEEVAS-TG--PGIRFFQLYVYKDRNVVA 139 (349)
Q Consensus 69 ~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~------~~e~i~~-~~--~~~~~~Ql~~~~~~~~~~ 139 (349)
++++||++|||++.+ +.+++..+++.|..++++++.+. ..+.... .. ..+.++||+. ++++...
T Consensus 2 ~l~nri~~APM~~~t------~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~QL~g-~~~~~~~ 74 (318)
T 1vhn_A 2 SLEVKVGLAPMAGYT------DSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIFG-SEPNELS 74 (318)
T ss_dssp ---CEEEECCCTTTC------SHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHSCCTTCTTEEEEEEC-SCHHHHH
T ss_pred ccCCCEEECCCCCCC------cHHHHHHHHHHCcCEEEeCCEEEcccccCCHhHHHhhhCcCCCeEEEEeCC-CCHHHHH
Confidence 567899999998643 46899999999998888877431 1111111 12 2679999994 6888899
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec-----
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL----- 213 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~----- 213 (349)
+.+++++++ +++|+||++||....|. .++. -.+ ..++++ ++.++++++.+++||++|...
T Consensus 75 ~aa~~a~~~-~d~Iein~gcP~~~~r~----~~~G----~~l-----~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~ 140 (318)
T 1vhn_A 75 EAARILSEK-YKWIDLNAGCPVRKVVK----EGAG----GAL-----LKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKN 140 (318)
T ss_dssp HHHHHHTTT-CSEEEEEECCCCHHHHH----TTCG----GGG-----GSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSC
T ss_pred HHHHHHHHh-CCEEEEECCCCcHhcCC----CCcc----cch-----hhCHHHHHHHHHHHHHhhCCCEEEEecCCCChH
Confidence 999999999 99999999999642221 1110 000 235677 899999999999999999652
Q ss_pred -CHHHHHHHHHcCCCEEEEecCCCCCC--CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCCEEEEch
Q 018919 214 -TAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGR 289 (349)
Q Consensus 214 -~~~~a~~a~~~G~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~~V~ig~ 289 (349)
..+.++.+.++|+|+|+|+ |++.. ..+++.++.+.++++ ++|||++|||++++|+.++++ .|||+|++||
T Consensus 141 ~~~~~a~~l~~~G~d~i~v~--g~~~~~~~~~~~~~~~i~~i~~----~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR 214 (318)
T 1vhn_A 141 EVEEIYRILVEEGVDEVFIH--TRTVVQSFTGRAEWKALSVLEK----RIPTFVSGDIFTPEDAKRALEESGCDGLLVAR 214 (318)
T ss_dssp CHHHHHHHHHHTTCCEEEEE--SSCTTTTTSSCCCGGGGGGSCC----SSCEEEESSCCSHHHHHHHHHHHCCSEEEESG
T ss_pred HHHHHHHHHHHhCCCEEEEc--CCCccccCCCCcCHHHHHHHHc----CCeEEEECCcCCHHHHHHHHHcCCCCEEEECH
Confidence 1378999999999999994 44432 235556666655543 799999999999999999999 7999999999
Q ss_pred HHH-----HHHhhc----CH---HHHHHHHHHHHHHHHHHHHHcCCC-Chhhhcccceec
Q 018919 290 PVV-----YSLAAE----GE---KGVRRVLEMLREEFELAMALSGCR-SLKEITRDHIVT 336 (349)
Q Consensus 290 ~~l-----~~~~~~----G~---~gv~~~l~~l~~el~~~m~~~G~~-~i~~l~~~~l~~ 336 (349)
+++ +..... |. .++.++++.+.++++..|.+.|.. .+.+++++..+.
T Consensus 215 ~~l~~P~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 274 (318)
T 1vhn_A 215 GAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGY 274 (318)
T ss_dssp GGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred HHHhCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 764 333222 43 467889999999999999999975 788888876554
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=202.54 Aligned_cols=166 Identities=21% Similarity=0.311 Sum_probs=132.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEecCHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~ 216 (349)
.+.++.+.++|++.++++..++ +... ++.++++++.+ ++||+++.+.+.+
T Consensus 233 ~~~a~~l~~aG~d~I~id~a~g----------------------------~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e 284 (496)
T 4fxs_A 233 EERVKALVEAGVDVLLIDSSHG----------------------------HSEGVLQRIRETRAAYPHLEIIGGNVATAE 284 (496)
T ss_dssp HHHHHHHHHTTCSEEEEECSCT----------------------------TSHHHHHHHHHHHHHCTTCCEEEEEECSHH
T ss_pred HHHHHHHHhccCceEEeccccc----------------------------cchHHHHHHHHHHHHCCCceEEEcccCcHH
Confidence 4566667777888877766543 1223 67899999998 8999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 217 DARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.|+.+.++|||+|++++.+|.. ...+.+++..+.+++++++. ++|||++|||++++|+.|++++|||+||+||
T Consensus 285 ~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iGs 364 (496)
T 4fxs_A 285 GARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGS 364 (496)
T ss_dssp HHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred HHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEecH
Confidence 9999999999999997544421 12356788999999887642 6999999999999999999999999999999
Q ss_pred HHHH--------------------HHhh-----cC-------------------H-------HHHHHHHHHHHHHHHHHH
Q 018919 290 PVVY--------------------SLAA-----EG-------------------E-------KGVRRVLEMLREEFELAM 318 (349)
Q Consensus 290 ~~l~--------------------~~~~-----~G-------------------~-------~gv~~~l~~l~~el~~~m 318 (349)
+|+. ++++ +| . ..+.+++..+..+|+..|
T Consensus 365 ~f~~t~Espg~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~~l~~~~ 444 (496)
T 4fxs_A 365 MFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGLRSCM 444 (496)
T ss_dssp TTTTBTTSSSCCEESSSCEEEEEECTTSHHHHHSSSCCSTTTC---CCCCCCSBCEEEEECCBCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCcceeeeCCeEeeeecccchHHHHhccccccccccccccccccCCccEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 8853 2211 00 0 136789999999999999
Q ss_pred HHcCCCChhhhccc
Q 018919 319 ALSGCRSLKEITRD 332 (349)
Q Consensus 319 ~~~G~~~i~~l~~~ 332 (349)
.++|+.+|+||+..
T Consensus 445 ~~~g~~~i~~l~~~ 458 (496)
T 4fxs_A 445 GLTGSATVEDLRTK 458 (496)
T ss_dssp HHHTCSBHHHHHHH
T ss_pred HhcCcCcHHHHHhC
Confidence 99999999999854
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-22 Score=195.41 Aligned_cols=253 Identities=19% Similarity=0.180 Sum_probs=171.2
Q ss_pred ccccccccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCC-------------
Q 018919 46 ILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST------------- 111 (349)
Q Consensus 46 ~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~------------- 111 (349)
+.+.|... ..+++.++++++|+++.+||++|+... ..+ ...+...+.|..+++. +.+.
T Consensus 68 ~~~~~~~~-~~~~~~l~~~i~Gl~~~NPvglAAG~d-----k~~--~~~~~l~~~GfG~v~~gtvT~~pq~GNp~PR~~r 139 (443)
T 1tv5_A 68 YNILPYDT-SNDSIYACTNIKHLDFINPFGVAAGFD-----KNG--VCIDSILKLGFSFIEIGTITPRGQTGNAKPRIFR 139 (443)
T ss_dssp TTCSCCCC-SCCCGGGCEEETTEEESSSEEECTTTT-----TTC--SSHHHHHTTTCSEEEEEEECSSCBCCSCSCCEEE
T ss_pred ccCCcccc-cCCCccCCeEECCEEeCCCcEECCccc-----Ccc--HHHHHHHhcCCCEEEEeeeecCCCCCCCCccEEe
Confidence 34555422 234567799999999999999998431 111 2233467788666542 1111
Q ss_pred ---------------CCHHH----HHh---h-------CCCceEEEEeecCC-hhHHHHHHHHHHHc--CCCEEEEecCC
Q 018919 112 ---------------SSVEE----VAS---T-------GPGIRFFQLYVYKD-RNVVAQLVRRAERA--GFKAIALTVDT 159 (349)
Q Consensus 112 ---------------~~~e~----i~~---~-------~~~~~~~Ql~~~~~-~~~~~~~~~~~~~~--G~~~i~i~~d~ 159 (349)
..++. +.+ . .+.+..+|+..+++ ++...+.++.++.. ++++|+||+.|
T Consensus 140 l~e~~~iiN~~GfnN~G~~~~~~~l~~~~~~~~~~~~~~~~~vgvni~~~~~~~~~~~dy~~~a~~l~~~aD~ieiNisc 219 (443)
T 1tv5_A 140 DVESRSIINSCGFNNMGCDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSS 219 (443)
T ss_dssp ETTTTEEEECCCSCBSCHHHHHHHHHHHHHHHHHCSTTTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCC
T ss_pred ccccceeeeccccCChhHHHHHHHHHHHhhhcccccccCCceEEEEecCcccchHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 01111 111 1 02457789987542 22344444444433 69999999999
Q ss_pred CCCC-chhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh-----------------------------------
Q 018919 160 PRLG-RREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI----------------------------------- 202 (349)
Q Consensus 160 p~~g-~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~----------------------------------- 202 (349)
|... .| ++ .+++. .+.++.+++.
T Consensus 220 Pnt~Glr--~l------------------q~~~~l~~il~~v~~~~~~~~~~~~~~~g~~~~~~~~vv~~~~~~~~~~~~ 279 (443)
T 1tv5_A 220 PNTPGLR--DN------------------QEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSH 279 (443)
T ss_dssp TTSTTGG--GG------------------GSHHHHHHHHHHHHHHHHHHC------------------------------
T ss_pred CCCcccc--cc------------------cCHHHHHHHHHHHHHHHhhhcccCccccccCHHHHHHHHHHhhcccccchh
Confidence 9641 11 11 12233 3344444432
Q ss_pred ---------------cCCc-EEEEEecC--H----HHHHHHHHcCCCEEEEecCCCCCCC--------C---chh----h
Q 018919 203 ---------------TKLP-ILVKGVLT--A----EDARIAVQAGAAGIIVSNHGARQLD--------Y---VPA----T 245 (349)
Q Consensus 203 ---------------~~~p-v~vK~v~~--~----~~a~~a~~~G~d~I~v~~~gg~~~~--------~---~~~----~ 245 (349)
.++| |++|+..+ . +.|+.+.++|+|+|+++|+...+.+ + |++ +
T Consensus 280 ~~~~~~~~~~~~~~~~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~s 359 (443)
T 1tv5_A 280 MMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDIS 359 (443)
T ss_dssp --------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHH
T ss_pred hhhhhhhcchhcccCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHH
Confidence 3689 99999754 2 3388999999999999997653221 1 222 4
Q ss_pred HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 018919 246 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRS 325 (349)
Q Consensus 246 ~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~ 325 (349)
++.+.++++.+++++|||++|||++++|+.++|++|||+||+||++++. |+ .+++.++++++.+|...|+++
T Consensus 360 l~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~~----gP----~l~~~i~~~l~~~l~~~G~~s 431 (443)
T 1tv5_A 360 TKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFN----GM----KSAVQIKRELNHLLYQRGYYN 431 (443)
T ss_dssp HHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHH----GG----GHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhc----Ch----HHHHHHHHHHHHHHHHhCCCC
Confidence 6788999988866899999999999999999999999999999999973 44 367888999999999999999
Q ss_pred hhhhcccce
Q 018919 326 LKEITRDHI 334 (349)
Q Consensus 326 i~~l~~~~l 334 (349)
++|+++...
T Consensus 432 i~e~~G~~~ 440 (443)
T 1tv5_A 432 LKEAIGRKH 440 (443)
T ss_dssp SGGGTTTTC
T ss_pred HHHHhhhhc
Confidence 999998753
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=202.72 Aligned_cols=139 Identities=20% Similarity=0.286 Sum_probs=118.1
Q ss_pred HHHHHHHHHhc-C-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC-----CC-CCchhhHHHHHHHHHHhcC------
Q 018919 193 DEDVKWLQTIT-K-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QL-DYVPATIMALEEVVKATQG------ 258 (349)
Q Consensus 193 ~~~i~~i~~~~-~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~-----~~-~~~~~~~~~l~~i~~~~~~------ 258 (349)
++.++++++.+ + +|++++.+.+.++++.+.++|+|+|+++.+||. .. .+|.|++.++.++.++++.
T Consensus 271 ~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~ 350 (503)
T 1me8_A 271 KITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETG 350 (503)
T ss_dssp HHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhCCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcC
Confidence 77899999987 5 899999999999999999999999999655542 22 3477889999999876532
Q ss_pred -CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhhcCH-----------------
Q 018919 259 -RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAEGE----------------- 300 (349)
Q Consensus 259 -~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~~G~----------------- 300 (349)
++|||++|||+++.|++|||++||++|++|++|+ |++++.|+
T Consensus 351 ~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~~~~E~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~ 430 (503)
T 1me8_A 351 IYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQKLSFE 430 (503)
T ss_dssp EECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSHHHHCC--------------
T ss_pred CCceEEEeCCCCCHHHHHHHHHcCCCEEEECchhhccccCCCceEEECCeEEEeecCccchhHhhccccccccccceecc
Confidence 5999999999999999999999999999999995 33332211
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 018919 301 ----------KGVRRVLEMLREEFELAMALSGCRSLKEITR 331 (349)
Q Consensus 301 ----------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~ 331 (349)
.++.++++.|..||+..|.++|+.+++||++
T Consensus 431 eg~~~~~~~~~~v~~~~~~~~~~l~~~m~~~G~~~i~~l~~ 471 (503)
T 1me8_A 431 EGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQS 471 (503)
T ss_dssp CCCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred cceeEecCCCCcHHHHHHHHHHHHHHHHHhcCcchHHHHHh
Confidence 2578999999999999999999999999986
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-22 Score=188.28 Aligned_cols=209 Identities=18% Similarity=0.203 Sum_probs=150.7
Q ss_pred CCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCCC------------------------
Q 018919 58 KIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS------------------------ 112 (349)
Q Consensus 58 ~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~~------------------------ 112 (349)
.+|++++++|+++++||++|++ . ++++ .+++++++.|+.+++. +.+..
T Consensus 42 ~~~l~~~i~g~~l~npi~~aag-~----~~~~--~~~~~~a~~G~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g 114 (336)
T 1f76_A 42 VPAKPVNCMGLTFKNPLGLAAG-L----DKDG--ECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMG 114 (336)
T ss_dssp CCCCCEEETTEEESSSEEECTT-S----STTC--CCHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCC
T ss_pred CCCCCeEECCEEcCCCcEeCcc-c----CCcH--HHHHHHHHcCccEEEeCCCCCCCCCCCCCcceeeccccceeeecCC
Confidence 4899999999999999999963 2 3333 3788899999887643 21110
Q ss_pred ----CHHH----HHhhCC-CceEEEEeecCC------hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC
Q 018919 113 ----SVEE----VASTGP-GIRFFQLYVYKD------RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (349)
Q Consensus 113 ----~~e~----i~~~~~-~~~~~Ql~~~~~------~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~ 177 (349)
..+. +.+... .+.++|+..+.+ .+...+.++++.+ |+|++++|+.||.... .+
T Consensus 115 ~~~~g~~~~~~~~~~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~-g~d~iein~~sP~~~g-~~---------- 182 (336)
T 1f76_A 115 FNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYA-YAGYIAINISSPNTPG-LR---------- 182 (336)
T ss_dssp CCBCCHHHHHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGG-GCSEEEEECCCSSSTT-GG----------
T ss_pred CCCcCHHHHHHHHHhcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhc-cCCEEEEEccCCCCCC-cc----------
Confidence 1122 222222 467889876431 3444555556554 8999999999986310 00
Q ss_pred cCcccccCCCCCCch-HHHHHHHHHhc---------CCcEEEEEecC------HHHHHHHHHcCCCEEEEecCC-CCC--
Q 018919 178 FLTLKNFQGLDLGKM-DEDVKWLQTIT---------KLPILVKGVLT------AEDARIAVQAGAAGIIVSNHG-ARQ-- 238 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~i~~i~~~~---------~~pv~vK~v~~------~~~a~~a~~~G~d~I~v~~~g-g~~-- 238 (349)
. ..++++ ++.++++|+.+ ++||++|.... .+.|+.+.++|+|+|+++|++ +++
T Consensus 183 -----~---~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~ 254 (336)
T 1f76_A 183 -----T---LQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLV 254 (336)
T ss_dssp -----G---GGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTS
T ss_pred -----c---ccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCccccccc
Confidence 0 124556 88999999988 89999998743 344789999999999999874 222
Q ss_pred -------CC---Cch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 239 -------LD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 239 -------~~---~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.. .|+ .+++.+.++++.+++++|||++|||++++|+.++|++|||+|++||++++
T Consensus 255 ~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 255 QGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp TTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred ccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHh
Confidence 01 122 24578888888886689999999999999999999999999999999997
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-21 Score=192.03 Aligned_cols=144 Identities=24% Similarity=0.413 Sum_probs=119.1
Q ss_pred Cch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC-----C-CCchhhHHHHHHHHHHhcC-CC
Q 018919 190 GKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-----L-DYVPATIMALEEVVKATQG-RI 260 (349)
Q Consensus 190 ~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~-----~-~~~~~~~~~l~~i~~~~~~-~i 260 (349)
+.. |+.++++++.+ ++||+++.+.+.++++.+.++|+|+|+++++||.. . ..+.++...+.++.+.++. ++
T Consensus 262 ~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~i 341 (494)
T 1vrd_A 262 SRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDV 341 (494)
T ss_dssp SHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCC
Confidence 444 88999999998 79999999999999999999999999998887631 1 2356778888888877543 79
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH--------------------HHhh-----cC--------------HH
Q 018919 261 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-----EG--------------EK 301 (349)
Q Consensus 261 pvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~--------------------~~~~-----~G--------------~~ 301 (349)
|||++|||+++.|+.|+|++|||+|++||+|+. ++++ .| ++
T Consensus 342 pvia~GGI~~~~di~kala~GAd~V~iGr~~l~~~e~~~~~~~~~~~~~k~~~g~~~~~a~~~g~~~~~~~~~~~~~~~~ 421 (494)
T 1vrd_A 342 PIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKFVPE 421 (494)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC------------------------
T ss_pred CEEEECCcCCHHHHHHHHHcCCCEEEECHHHhcCCcCCcceEEECCEEEEEEeccchHHHHhhccccchhhcccccccCC
Confidence 999999999999999999999999999999962 2211 00 23
Q ss_pred H----------HHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 302 G----------VRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 302 g----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
| +.++++.+..+|+..|.++|+.++++|++..
T Consensus 422 g~~~~~~~~~~v~~~~~~l~~~l~~~~~~~G~~~~~~l~~~~ 463 (494)
T 1vrd_A 422 GIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKA 463 (494)
T ss_dssp -CBCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHC
T ss_pred cceEccCcCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHhhC
Confidence 3 6799999999999999999999999998653
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=181.50 Aligned_cols=243 Identities=18% Similarity=0.181 Sum_probs=173.8
Q ss_pred cCcceeecccccccccCChhhHHHHHHHHHcCC-eEEecCCCCC------CHHHHHhhCC--CceEEEEeecCChhHHHH
Q 018919 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVAQ 140 (349)
Q Consensus 70 ~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~-~~~~~~~~~~------~~e~i~~~~~--~~~~~Ql~~~~~~~~~~~ 140 (349)
+++||++|||.+.+ +..++..+++.|. .++++++.+. ..+++.+..+ .+.++||+. .+++...+
T Consensus 2 l~nriv~APM~g~t------d~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~p~~~~~ 74 (350)
T 3b0p_A 2 LDPRLSVAPMVDRT------DRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIALQLAG-SDPKSLAE 74 (350)
T ss_dssp CCCSEEECCCTTTS------SHHHHHHHHHHCSSSBEECCCEEHHHHHHSCHHHHHCCCGGGCSEEEEEEC-SCHHHHHH
T ss_pred CCCCEEECCCCCCC------HHHHHHHHHHcCCCCEEEeCCEEechhhcCCHHHHhccCCCCCeEEEEeCC-CCHHHHHH
Confidence 57899999998643 6678888888886 5667776431 1123333333 678999986 68888899
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC-----
Q 018919 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT----- 214 (349)
Q Consensus 141 ~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~----- 214 (349)
.+++++++|++.|+||++||..-.|. .++. -.+ ..++++ .+.++.+++.+++||++|....
T Consensus 75 aA~~a~~~G~D~IeIn~gcP~~~~~~----d~~G----~~l-----~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~ 141 (350)
T 3b0p_A 75 AARIGEAFGYDEINLNLGCPSEKAQE----GGYG----ACL-----LLDLARVREILKAMGEAVRVPVTVKMRLGLEGKE 141 (350)
T ss_dssp HHHHHHHTTCSEEEEEECCCSHHHHH----TTCG----GGG-----GGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCC
T ss_pred HHHHHHHcCCCEEEECCcCCCCcCcC----CCcc----hhH-----HhCHHHHHHHHHHHHHHhCCceEEEEecCcCccc
Confidence 99999999999999999999642221 1111 000 135666 7889999998999999998631
Q ss_pred -----HHHHHHHHHcCCCEEEEecCCCCCCCC-------chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 215 -----AEDARIAVQAGAAGIIVSNHGARQLDY-------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 215 -----~~~a~~a~~~G~d~I~v~~~gg~~~~~-------~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
.+.++.+.++|+|+|++++....+... .+..++.+.++++.++ ++|||++|||++++|+.++++ ||
T Consensus 142 ~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~-~iPVianGgI~s~eda~~~l~-Ga 219 (350)
T 3b0p_A 142 TYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFP-QLTFVTNGGIRSLEEALFHLK-RV 219 (350)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHT-TS
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCC-CCeEEEECCcCCHHHHHHHHh-CC
Confidence 356789999999999996421101011 1236888888888763 699999999999999999998 99
Q ss_pred CEEEEchHHHHHHh--------hcC---HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceec
Q 018919 283 SGIFIGRPVVYSLA--------AEG---EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 336 (349)
Q Consensus 283 ~~V~ig~~~l~~~~--------~~G---~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~ 336 (349)
|+||+||+++..-. ..| .....++++.+.+.++..+.. |. .+.+++++.++.
T Consensus 220 D~V~iGRa~l~~P~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~kh~~~~ 282 (350)
T 3b0p_A 220 DGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVLK-GT-PPWAVLRHMLNL 282 (350)
T ss_dssp SEEEECHHHHHCGGGGTTHHHHTTCCSCCCCHHHHHHHHHHHHHHHHHH-TC-CHHHHHTTSTTT
T ss_pred CEEEECHHHHhCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-cHHHHHHHHHHH
Confidence 99999998864210 112 113456677788888877774 65 688888887654
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9e-21 Score=182.50 Aligned_cols=245 Identities=16% Similarity=0.093 Sum_probs=160.9
Q ss_pred CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCCC----------------------
Q 018919 55 DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST---------------------- 111 (349)
Q Consensus 55 ~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~~---------------------- 111 (349)
...+.|++|+++|++|++||++|+-.+ ++ +....+++.+.|..++. ++.+.
T Consensus 31 g~~~~~L~v~~~Gl~f~NPvglAaG~~----~~--~~e~~~~l~~~G~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~ 104 (354)
T 3tjx_A 31 GRGSMSLQVNLLNNTFANPFMNAAGVM----CT--TTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSM 104 (354)
T ss_dssp --CCCCCCEEETTEEESSSEEECTTSS----CS--SHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECC
T ss_pred CCCCCceeEEECCEEcCCCcEEccCCC----CC--CHHHHHHHHHcCCCEEEeCCcCcccccCCCCCeEEEccccccccc
Confidence 356889999999999999999997212 23 45677788888877653 22211
Q ss_pred ----CCHH----HHHhhCC---CceEEEEeecCChhHHHHHHHHHHH---cCCCEEEEecCCCCCCchhHHhhhhcCCCC
Q 018919 112 ----SSVE----EVASTGP---GIRFFQLYVYKDRNVVAQLVRRAER---AGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (349)
Q Consensus 112 ----~~~e----~i~~~~~---~~~~~Ql~~~~~~~~~~~~~~~~~~---~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~ 177 (349)
..++ ++.+... .+.++++.. .+.+...+..+++.+ .++++++||+.||.. |.
T Consensus 105 G~~n~G~~~~~~~~~~~~~~~~~pvivsi~g-~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~-------------~g 170 (354)
T 3tjx_A 105 GLPNNGFDFYLAYAAEQHDYGKKPLFLSMSG-LSMRENVEMCKRLAAVATEKGVILELNLSCPNV-------------PG 170 (354)
T ss_dssp CCCBCCHHHHHHHHHHTCCTTTCCEEEEECC-SSHHHHHHHHHHHHHHHHHHCCEEEEECC-------------------
T ss_pred ccCCHHHHHHHHHHHHhhccCCceEEEEEec-CChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCC-------------cc
Confidence 1122 2222221 457788866 455555555555543 489999999999853 10
Q ss_pred cCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH------HHHHHHHHcC-CCEEEEecCCC-------------
Q 018919 178 FLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA------EDARIAVQAG-AAGIIVSNHGA------------- 236 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~------~~a~~a~~~G-~d~I~v~~~gg------------- 236 (349)
.+.+ ..+++. .+.++++++.++.|+.+|..... ..+..+.+.+ ++.+...|+-.
T Consensus 171 ---~~~l--~~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~~~~~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~ 245 (354)
T 3tjx_A 171 ---KPQV--AYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAAFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVV 245 (354)
T ss_dssp ------C--TTSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEES
T ss_pred ---hhhh--ccCHHHHHHHHHHHHHHhhcccccccCCCCCchhHHHHHHHHHhhcccchhheeccccccccccccccccc
Confidence 0110 124444 56789999999999999997532 1233344443 44444333210
Q ss_pred ------CCCCCchhhH----HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHH
Q 018919 237 ------RQLDYVPATI----MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 306 (349)
Q Consensus 237 ------~~~~~~~~~~----~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~ 306 (349)
.+..+|++.+ +.+.++++.+ .++|||++|||+|++|++++|.+|||+|||||+++|. |+. +
T Consensus 246 ~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~-~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~----GP~----~ 316 (354)
T 3tjx_A 246 IKPKQGFGGLGGRYVLPTALANINAFYRRC-PGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEE----GPS----I 316 (354)
T ss_dssp CSGGGGEEEEEGGGGHHHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHH----CTT----H
T ss_pred ccCcccccccCchhhHHHHHHHHHHHHHhc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhc----Cch----H
Confidence 0112344433 4455555554 3789999999999999999999999999999999873 663 6
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 307 LEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 307 l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
++.+.+||+.+|+..|+++++|+++..
T Consensus 317 ~~~I~~~L~~~L~~~G~~si~e~~G~~ 343 (354)
T 3tjx_A 317 FERLTSELLGVMAKKRYQTLDEFRGKV 343 (354)
T ss_dssp HHHHHHHHHHHHHHHTCCSGGGTTTCC
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHhChh
Confidence 788999999999999999999999875
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=190.10 Aligned_cols=142 Identities=23% Similarity=0.325 Sum_probs=112.4
Q ss_pred CCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCc---hhhHHHHHHHHHHhc
Q 018919 189 LGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYV---PATIMALEEVVKATQ 257 (349)
Q Consensus 189 ~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~---~~~~~~l~~i~~~~~ 257 (349)
++.+ ++.++++++.+ ++||++|.+.+.++|+.+.++|+|+|++++++|.. .+.| ...+..+.++++.+
T Consensus 279 ~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~- 357 (514)
T 1jcn_A 279 NSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF- 357 (514)
T ss_dssp CSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG-
T ss_pred cchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC-
Confidence 3455 78899999998 89999999999999999999999999997664421 1134 23455566666555
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH--------------------HHhh--------------------
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-------------------- 297 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~--------------------~~~~-------------------- 297 (349)
++|||++|||+++.|+.|++++|||+|++||+|+. +++.
T Consensus 358 -~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~ 436 (514)
T 1jcn_A 358 -GVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQKRYFSEGDK 436 (514)
T ss_dssp -TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTSTTSSCC-------------------------------------
T ss_pred -CCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcCCcCCcceEeECCEEEEEecCcCCHHHHhhccccchhhcccccc
Confidence 79999999999999999999999999999998853 2210
Q ss_pred -cCHHHH----------HHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 298 -EGEKGV----------RRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 298 -~G~~gv----------~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
.+++|+ .++++.|..||+..|.++|+++++||++.
T Consensus 437 ~~~~~gv~~~~~~~g~~~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 482 (514)
T 1jcn_A 437 VKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSM 482 (514)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred ceecccceecCCCcccHHHHHHHHHHHHHHHHHhhCcccHHHHHhh
Confidence 023454 89999999999999999999999999975
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=189.33 Aligned_cols=146 Identities=16% Similarity=0.226 Sum_probs=120.1
Q ss_pred Cch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhc-CCC
Q 018919 190 GKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GRI 260 (349)
Q Consensus 190 ~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~-~~i 260 (349)
... |+.++++++.+ ++|++.+++.+.+.++.+.++|+|+|.+++.+|.. ...+.++++.+.++...++ .++
T Consensus 258 ~~~~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~i 337 (491)
T 1zfj_A 258 SAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGK 337 (491)
T ss_dssp CHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcCCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCC
Confidence 344 78899999999 89999999999999999999999999998665532 1235667888888877543 379
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH--------------------HHhhcC---------------------
Q 018919 261 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAAEG--------------------- 299 (349)
Q Consensus 261 pvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~--------------------~~~~~G--------------------- 299 (349)
|||++|||+++.|+.|++++||++|++|++|+. ++++.+
T Consensus 338 pvia~GGi~~~~di~kal~~GA~~v~vG~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~~~~~g~~~~~~~~ 417 (491)
T 1zfj_A 338 TIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANKL 417 (491)
T ss_dssp EEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CCC
T ss_pred CEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhCCCcCcceEEEECCEEEEEEecccCHHHHhcccccccccccccccccc
Confidence 999999999999999999999999999999972 111100
Q ss_pred -HHH----------HHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 300 -EKG----------VRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 300 -~~g----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
.+| +.++++.+..||+..|.++|+.++.+|+.....
T Consensus 418 ~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~G~~~~~~l~~~~~~ 464 (491)
T 1zfj_A 418 VPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHENAQF 464 (491)
T ss_dssp CCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHCCE
T ss_pred CcCcceEecCcCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhcCcE
Confidence 223 889999999999999999999999999865443
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-20 Score=183.19 Aligned_cols=139 Identities=22% Similarity=0.303 Sum_probs=110.3
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC-------CCCchhhHHHHHHHHHHhc-CCCcEEE
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-------LDYVPATIMALEEVVKATQ-GRIPVFL 264 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~-------~~~~~~~~~~l~~i~~~~~-~~ipvia 264 (349)
++.++++++.+++|+++|++.++++++.+. |+|+|.+ +.|+.. ...|.++...+.++.+... .++|||+
T Consensus 257 L~~I~~l~~~~~vpvi~k~v~~~~~a~~l~--G~d~v~v-g~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~~~~vpVia 333 (486)
T 2cu0_A 257 IKSMKEMRQKVDADFIVGNIANPKAVDDLT--FADAVKV-GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIA 333 (486)
T ss_dssp HHHHHHHHHTCCSEEEEEEECCHHHHTTCT--TSSEEEE-CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEE
T ss_pred hhHHHHHHHHhCCccccCCcCCHHHHHHhh--CCCeEEE-eeeeccceeeeEEeecCcchHHHHHHHHHHHHHcCCcEEe
Confidence 677999999999999999999999998888 9999999 444322 2234555555555544332 1799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHHH--------------------HHhhcC----------------------HHH
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAAEG----------------------EKG 302 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l~--------------------~~~~~G----------------------~~g 302 (349)
+|||+++.|++|||++|||+|++|++|+. ++++.| ++|
T Consensus 334 ~GGi~~~~di~kalalGA~~v~~g~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~r~~~g~~~~~~~~~~~g 413 (486)
T 2cu0_A 334 DGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVPEG 413 (486)
T ss_dssp ESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCCSCSSCCB
T ss_pred cCCCCCHHHHHHHHHcCCCceeeChhhhcCccCchhheeeCCcEEEEeecCCCHHHHhcccccccccccccccccccccc
Confidence 99999999999999999999999999983 221111 233
Q ss_pred ----------HHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 303 ----------VRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 303 ----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
+.++++.+..+|+..|.++|+.++.+|+....
T Consensus 414 ~~~~~~~~~~~~~~~~~l~~~lr~~m~~~G~~~~~~l~~~~~ 455 (486)
T 2cu0_A 414 VEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEKGE 455 (486)
T ss_dssp CEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCC
T ss_pred eEEeecccCCHHHHHHHHHHHHHHhcccCCcCCHHHHHhhCC
Confidence 88999999999999999999999999985533
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-18 Score=161.64 Aligned_cols=195 Identities=19% Similarity=0.233 Sum_probs=143.7
Q ss_pred eeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH-------HhhCCCceEEEEeecC--
Q 018919 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYK-- 133 (349)
Q Consensus 63 ~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i-------~~~~~~~~~~Ql~~~~-- 133 (349)
+++++. +.||++|||++.+ +..++.++.++|..+++...+..+.+++ ++....++.++++...
T Consensus 9 ~~~l~~--~~Pii~apM~gvs------~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~ 80 (328)
T 2gjl_A 9 TETFGV--EHPIMQGGMQWVG------RAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQ 80 (328)
T ss_dssp HHHHTC--SSSEEECCCTTTC------SHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCS
T ss_pred HHHhCC--CCCEEECCCCCCC------cHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 345554 5799999997643 4579999999998777754332234443 2222346778888741
Q ss_pred -ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe
Q 018919 134 -DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV 212 (349)
Q Consensus 134 -~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v 212 (349)
+++ ..+.++.+.+.|++.+.++.++| ++.++++++. ++|++.+ +
T Consensus 81 ~~~~-~~~~~~~~~~~g~d~V~~~~g~p--------------------------------~~~~~~l~~~-gi~vi~~-v 125 (328)
T 2gjl_A 81 KPVP-YAEYRAAIIEAGIRVVETAGNDP--------------------------------GEHIAEFRRH-GVKVIHK-C 125 (328)
T ss_dssp SCCC-HHHHHHHHHHTTCCEEEEEESCC--------------------------------HHHHHHHHHT-TCEEEEE-E
T ss_pred cCcc-HHHHHHHHHhcCCCEEEEcCCCc--------------------------------HHHHHHHHHc-CCCEEee-C
Confidence 222 45678888999999999887653 3567777765 8898864 7
Q ss_pred cCHHHHHHHHHcCCCEEEEecC--CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 213 LTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
.+.++++.+.+.|+|+|++++. ||+......++++.++++++.+ ++||+++|||++++|+.+++++|||+|++||+
T Consensus 126 ~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~--~iPviaaGGI~~~~~v~~al~~GAdgV~vGs~ 203 (328)
T 2gjl_A 126 TAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL--RVPIIASGGFADGRGLVAALALGADAINMGTR 203 (328)
T ss_dssp SSHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEESHH
T ss_pred CCHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence 8899999999999999999763 4332111346788898888766 79999999999999999999999999999999
Q ss_pred HHHHHhhcCHHH
Q 018919 291 VVYSLAAEGEKG 302 (349)
Q Consensus 291 ~l~~~~~~G~~g 302 (349)
|+....+.+.+.
T Consensus 204 ~~~~~e~~~~~~ 215 (328)
T 2gjl_A 204 FLATRECPIHPA 215 (328)
T ss_dssp HHTSSSSCSCHH
T ss_pred HHcCccccccHH
Confidence 987654444433
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-18 Score=160.05 Aligned_cols=186 Identities=20% Similarity=0.274 Sum_probs=139.9
Q ss_pred ecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH----hh---CCCceEEEEeecCChhHHHHH
Q 018919 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA----ST---GPGIRFFQLYVYKDRNVVAQL 141 (349)
Q Consensus 69 ~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~----~~---~~~~~~~Ql~~~~~~~~~~~~ 141 (349)
.++.||++|||++.+ +..++.++.++|..+++... ..+.+++. +. ...++.++++.. +++ ..+.
T Consensus 24 ~~~~Pii~apM~gvs------~~~la~av~~aGglG~i~~~-~~~~~~l~~~i~~i~~~~~~p~gVnl~~~-~~~-~~~~ 94 (326)
T 3bo9_A 24 EIEHPILMGGMAWAG------TPTLAAAVSEAGGLGIIGSG-AMKPDDLRKAISELRQKTDKPFGVNIILV-SPW-ADDL 94 (326)
T ss_dssp TCSSSEEECCCTTTS------CHHHHHHHHHTTSBEEEECT-TCCHHHHHHHHHHHHTTCSSCEEEEEETT-STT-HHHH
T ss_pred CCCCCEEECCCCCCC------CHHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEEecc-CCC-HHHH
Confidence 456899999998643 45799999999987777532 23444432 21 224677887752 332 3567
Q ss_pred HHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHH
Q 018919 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIA 221 (349)
Q Consensus 142 ~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a 221 (349)
++.+.+.|++.+.++.++| .+.++++++ .++|+++ .+.+.++++.+
T Consensus 95 ~~~~~~~g~d~V~l~~g~p--------------------------------~~~~~~l~~-~g~~v~~-~v~s~~~a~~a 140 (326)
T 3bo9_A 95 VKVCIEEKVPVVTFGAGNP--------------------------------TKYIRELKE-NGTKVIP-VVASDSLARMV 140 (326)
T ss_dssp HHHHHHTTCSEEEEESSCC--------------------------------HHHHHHHHH-TTCEEEE-EESSHHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCc--------------------------------HHHHHHHHH-cCCcEEE-EcCCHHHHHHH
Confidence 7888899999999877653 245666765 4888876 46889999999
Q ss_pred HHcCCCEEEEec--CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcC
Q 018919 222 VQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 299 (349)
Q Consensus 222 ~~~G~d~I~v~~--~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G 299 (349)
.++|+|+|++++ +||+. +..++++.++++++.+ ++|||++|||++++|+.+++++||++|++||+|+....+.+
T Consensus 141 ~~~GaD~i~v~g~~~GG~~--G~~~~~~ll~~i~~~~--~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~~e~~~ 216 (326)
T 3bo9_A 141 ERAGADAVIAEGMESGGHI--GEVTTFVLVNKVSRSV--NIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVESDV 216 (326)
T ss_dssp HHTTCSCEEEECTTSSEEC--CSSCHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBSSCCS
T ss_pred HHcCCCEEEEECCCCCccC--CCccHHHHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcCccccc
Confidence 999999999987 45532 2356889999998877 79999999999999999999999999999999987554433
Q ss_pred HH
Q 018919 300 EK 301 (349)
Q Consensus 300 ~~ 301 (349)
.+
T Consensus 217 ~~ 218 (326)
T 3bo9_A 217 HP 218 (326)
T ss_dssp CH
T ss_pred cH
Confidence 33
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-18 Score=161.33 Aligned_cols=183 Identities=21% Similarity=0.251 Sum_probs=138.2
Q ss_pred eEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH-------HhhCCCceEEEEeecCChh
Q 018919 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRN 136 (349)
Q Consensus 64 ~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i-------~~~~~~~~~~Ql~~~~~~~ 136 (349)
+++| ++.||+.|||++.+ +..++.++.++|...++.... .+.+++ ++....++.+|++.. +++
T Consensus 7 ~~l~--~~~Pii~apM~g~s------~~~la~av~~aG~lG~i~~~~-~~~~~~~~~i~~i~~~~~~p~gvnl~~~-~~~ 76 (332)
T 2z6i_A 7 ELLK--IDYPIFQGGMAWVA------DGDLAGAVSKAGGLGIIGGGN-APKEVVKANIDKIKSLTDKPFGVNIMLL-SPF 76 (332)
T ss_dssp HHHT--CSSSEEECCCTTTC------CHHHHHHHHHHTSBEEEECTT-CCHHHHHHHHHHHHHHCCSCEEEEECTT-STT
T ss_pred HHhC--CCCCEEeCCCCCCC------cHHHHHHHHhCCCcEEeCCCC-CCHHHHHHHHHHHHHhcCCCEEEEecCC-CCC
Confidence 3455 56799999998532 347899999999866664322 244432 222235788998763 333
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHH
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAE 216 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~ 216 (349)
..+.++.+.+.|++++.++.++|. +.++++++ .++|+++| +.+.+
T Consensus 77 -~~~~~~~a~~~g~d~V~~~~g~p~--------------------------------~~i~~l~~-~g~~v~~~-v~~~~ 121 (332)
T 2z6i_A 77 -VEDIVDLVIEEGVKVVTTGAGNPS--------------------------------KYMERFHE-AGIIVIPV-VPSVA 121 (332)
T ss_dssp -HHHHHHHHHHTTCSEEEECSSCGG--------------------------------GTHHHHHH-TTCEEEEE-ESSHH
T ss_pred -HHHHHHHHHHCCCCEEEECCCChH--------------------------------HHHHHHHH-cCCeEEEE-eCCHH
Confidence 456788889999999998876541 34666665 48999987 57899
Q ss_pred HHHHHHHcCCCEEEEecC--CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 217 DARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
+++.+.+.|+|+|++++. ||+. +..++++.++++++.+ ++|||++|||++++++.+++++|||+|++||+|+..
T Consensus 122 ~a~~~~~~GaD~i~v~g~~~GG~~--g~~~~~~ll~~i~~~~--~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~ 197 (332)
T 2z6i_A 122 LAKRMEKIGADAVIAEGMEAGGHI--GKLTTMTLVRQVATAI--SIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVA 197 (332)
T ss_dssp HHHHHHHTTCSCEEEECTTSSEEC--CSSCHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTB
T ss_pred HHHHHHHcCCCEEEEECCCCCCCC--CCccHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcC
Confidence 999999999999999764 4431 2356788899998887 799999999999999999999999999999999865
Q ss_pred H
Q 018919 295 L 295 (349)
Q Consensus 295 ~ 295 (349)
.
T Consensus 198 ~ 198 (332)
T 2z6i_A 198 K 198 (332)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-16 Score=153.57 Aligned_cols=183 Identities=22% Similarity=0.258 Sum_probs=132.3
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH-------HhhCCCceEEEEeecCCh----h---
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDR----N--- 136 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i-------~~~~~~~~~~Ql~~~~~~----~--- 136 (349)
..||+.|||++ ++. +..++.++.++|..++++.. ..+.+++ .+..++++.+|++..... +
T Consensus 10 ~~Pii~apMag-gvs----~~~la~av~~aGglG~i~~~-~~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~ 83 (369)
T 3bw2_A 10 PLPIVQAPMAG-GVS----VPQLAAAVCEAGGLGFLAAG-YKTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVE 83 (369)
T ss_dssp SSSEEECCCTT-TTS----CHHHHHHHHHTTSBEEEECT-TSCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHH
T ss_pred cCCEEeCCCCC-CCC----cHHHHHHHHHCCCEEEcCCC-CCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHH
Confidence 78999999985 122 45899999999998888643 2344443 222335678888764331 0
Q ss_pred --------------------------HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC
Q 018919 137 --------------------------VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (349)
Q Consensus 137 --------------------------~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~ 190 (349)
...+.++.+.+.|++.+.++.++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~----------------------------- 134 (369)
T 3bw2_A 84 VYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPD----------------------------- 134 (369)
T ss_dssp HHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCC-----------------------------
T ss_pred HHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCc-----------------------------
Confidence 1244556666677777776665431
Q ss_pred chHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecC--CCC---CCCCc------hhhHHHHHHHHHHhcCC
Q 018919 191 KMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GAR---QLDYV------PATIMALEEVVKATQGR 259 (349)
Q Consensus 191 ~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~--gg~---~~~~~------~~~~~~l~~i~~~~~~~ 259 (349)
++.++++++ .++|++++ +.+.++++.+.++|+|+|++++. ||+ ..... ...++.++++++.+ +
T Consensus 135 --~~~i~~~~~-~g~~v~~~-v~t~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~--~ 208 (369)
T 3bw2_A 135 --REVIARLRR-AGTLTLVT-ATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV--D 208 (369)
T ss_dssp --HHHHHHHHH-TTCEEEEE-ESSHHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC--S
T ss_pred --HHHHHHHHH-CCCeEEEE-CCCHHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc--C
Confidence 466788876 48888764 67899999999999999999763 332 11111 23488888888876 7
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 260 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 260 ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
+|||++|||++++++.+++++|||+|++||+|+..
T Consensus 209 iPViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~ 243 (369)
T 3bw2_A 209 IPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLAT 243 (369)
T ss_dssp SCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred ceEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 99999999999999999999999999999999864
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-15 Score=143.59 Aligned_cols=221 Identities=18% Similarity=0.167 Sum_probs=144.1
Q ss_pred ceeEcCeecCcceeeccccccccc----CC-hhhHH-HHHHHHHcCCeEEecCCCCC--------------C------HH
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMA----HP-EGEYA-TARAASAAGTIMTLSSWSTS--------------S------VE 115 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~----~~-~~~~~-la~aa~~~G~~~~~~~~~~~--------------~------~e 115 (349)
..+|.+.+++++|++|||+...-. .| +-... +.+.| +.|+.++++++... + .+
T Consensus 8 p~~ig~~~l~NRiv~aPm~~~~~~~~~g~~~~~~~~~y~~rA-~gG~gliite~~~v~~~g~~~~~~~~i~~d~~~~~~~ 86 (338)
T 1z41_A 8 PITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRA-IGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFA 86 (338)
T ss_dssp CEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHH-HTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHH
T ss_pred CeeECCEEEcCccEECCcCCCcCCCCCCCCCHHHHHHHHHHH-cCCCCEEEeCCeeccccccCCCCCcccCCHHHHHHHH
Confidence 477889999999999999865421 12 11122 33333 56777777654211 1 11
Q ss_pred HHHh---hCCCceEEEEeec----------------------CCh------------hHHHHHHHHHHHcCCCEEEEecC
Q 018919 116 EVAS---TGPGIRFFQLYVY----------------------KDR------------NVVAQLVRRAERAGFKAIALTVD 158 (349)
Q Consensus 116 ~i~~---~~~~~~~~Ql~~~----------------------~~~------------~~~~~~~~~~~~~G~~~i~i~~d 158 (349)
.+.+ ....+.++||+.. ..+ +...+.+++++++|+|+|+||..
T Consensus 87 ~~~~~vh~~g~~i~~QL~h~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~aGfDgVeih~~ 166 (338)
T 1z41_A 87 KLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAA 166 (338)
T ss_dssp HHHHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHHHHHhcCCEEEEEecCCCcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 2221 1235678999742 112 23456677888999999999997
Q ss_pred CCCCCchhHHhhhhcCCCCcCccc--ccCC-C-CCCch-HHHHHHHHHhcCCcEEEEEec--------CH----HHHHHH
Q 018919 159 TPRLGRREADIKNRFTLPPFLTLK--NFQG-L-DLGKM-DEDVKWLQTITKLPILVKGVL--------TA----EDARIA 221 (349)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~-~~~~~-~~~i~~i~~~~~~pv~vK~v~--------~~----~~a~~a 221 (349)
|.. +-+.|..|.. ..+ ...+ + ....+ .+.++.+|+.++.||.+|+.. +. +.++.+
T Consensus 167 ~gy-------Ll~qFlsp~~-n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l 238 (338)
T 1z41_A 167 HGY-------LIHEFLSPLS-NHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWM 238 (338)
T ss_dssp TTS-------HHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHH
T ss_pred cch-------HHHHccCCCc-CCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHH
Confidence 621 1112222210 000 0001 0 12345 678999999999999999864 23 457888
Q ss_pred HHcCCCEEEEecCCCC-C-CCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 222 VQAGAAGIIVSNHGAR-Q-LDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 222 ~~~G~d~I~v~~~gg~-~-~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
.++|+|+|.+++.... + ...++ ..++.+.++++.+ ++||++.|||++++++.++|+.| ||+|++||+++.
T Consensus 239 ~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~ 312 (338)
T 1z41_A 239 KEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA--DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLR 312 (338)
T ss_dssp HHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH--CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred HHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHh
Confidence 9999999999764211 1 11223 2467788888887 79999999999999999999998 999999999985
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-13 Score=128.66 Aligned_cols=223 Identities=18% Similarity=0.192 Sum_probs=141.1
Q ss_pred cceeEcCeecCcceeeccccccccc----CC-hhhHHHHHHHHHcCCeEEecCCCCC--------------C---H---H
Q 018919 61 MNTTVLGFKISMPIMIAPTAMQKMA----HP-EGEYATARAASAAGTIMTLSSWSTS--------------S---V---E 115 (349)
Q Consensus 61 ~s~~l~g~~~~~Pi~iApm~~~~l~----~~-~~~~~la~aa~~~G~~~~~~~~~~~--------------~---~---e 115 (349)
...+|.++++++-|+.|||+...-. .| +.....-..-++.|+.+++++.... + + .
T Consensus 7 ~p~~ig~~~l~NRiv~apm~~~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~~~~ 86 (340)
T 3gr7_A 7 SPYTIRGLTLKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATGVTPQGRISERDLGIWSDDHIAGLR 86 (340)
T ss_dssp SCEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSEECSSTTHHHHHH
T ss_pred CCEeECCEEEcCceEECCcCCCcccCCCCCCCHHHHHHHHHHhcCCceEEEEcceEecccccCCCCCcccCCHHHHHHHH
Confidence 3578889999999999999743211 12 1123333344446666666432110 1 1 1
Q ss_pred HHHh---hCCCceEEEEeecC----------------------Ch------------hHHHHHHHHHHHcCCCEEEEecC
Q 018919 116 EVAS---TGPGIRFFQLYVYK----------------------DR------------NVVAQLVRRAERAGFKAIALTVD 158 (349)
Q Consensus 116 ~i~~---~~~~~~~~Ql~~~~----------------------~~------------~~~~~~~~~~~~~G~~~i~i~~d 158 (349)
.+.+ ......++||.-.. .+ +...+.+++++++|+|+|+||..
T Consensus 87 ~~~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a 166 (340)
T 3gr7_A 87 ELVGLVKEHGAAIGIQLAHAGRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAA 166 (340)
T ss_dssp HHHHHHHHTTCEEEEEEECCGGGCCSSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred HHHHHHHhCCCeEEEEeccCCCccCCCCCccCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 1222 12345688884310 00 12345567778899999999997
Q ss_pred CCCCCchhHHhhhhcCCCCcCccc--ccCC-C-CCCch-HHHHHHHHHhcCCcEEEEEecC------------HHHHHHH
Q 018919 159 TPRLGRREADIKNRFTLPPFLTLK--NFQG-L-DLGKM-DEDVKWLQTITKLPILVKGVLT------------AEDARIA 221 (349)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~-~~~~~-~~~i~~i~~~~~~pv~vK~v~~------------~~~a~~a 221 (349)
+- + +-++|..|.. ..+ ...+ + ....+ .+.++.+|+.++.||.+|+... .+.++.+
T Consensus 167 ~G---y----Ll~qFlsp~~-N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L 238 (340)
T 3gr7_A 167 HG---Y----LINEFLSPLS-NRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRM 238 (340)
T ss_dssp TT---C----HHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHH
T ss_pred cc---h----HHHHcCCCcc-CcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHH
Confidence 51 1 1122222210 000 0011 1 11235 6789999999999999999742 3568889
Q ss_pred HHcCCCEEEEecCCCCC--CCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 222 VQAGAAGIIVSNHGARQ--LDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 222 ~~~G~d~I~v~~~gg~~--~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
.++|+|+|.+++.+... ...++ ..++.+.++++.+ ++||++.|||++++++.++|+.| ||+|++||+++.
T Consensus 239 ~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~--~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~la 312 (340)
T 3gr7_A 239 KEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREA--DIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLR 312 (340)
T ss_dssp HHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHT--TCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred HHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHc--CCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHh
Confidence 99999999998532111 11122 2567788888887 79999999999999999999998 999999999985
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.9e-14 Score=134.84 Aligned_cols=218 Identities=18% Similarity=0.154 Sum_probs=142.0
Q ss_pred ceeEcCeecCcceeecccccccccCCh---hhHHHHHHHHHcCCeEEecCCCCC--------------CHH------HHH
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPE---GEYATARAASAAGTIMTLSSWSTS--------------SVE------EVA 118 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~---~~~~la~aa~~~G~~~~~~~~~~~--------------~~e------~i~ 118 (349)
..+|.+.+++++|++|||+...-.+++ .+..+..-++++++.++++++... +.+ .+.
T Consensus 8 P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rA~~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~ 87 (365)
T 2gou_A 8 PITLGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRASAGLIVSEGTQISPTAKGYAWTPGIYTPEQIAGWRIVT 87 (365)
T ss_dssp CEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCSTTCCBSSSHHHHHHHHHHH
T ss_pred CeeECCEEEcCceEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEECceeecccccCCCCCCccCCHHHHHHHHHHH
Confidence 467889999999999999865321122 255666667777777777654211 122 122
Q ss_pred hh---CCCceEEEEeec-----------------------------------------CCh------------hHHHHHH
Q 018919 119 ST---GPGIRFFQLYVY-----------------------------------------KDR------------NVVAQLV 142 (349)
Q Consensus 119 ~~---~~~~~~~Ql~~~-----------------------------------------~~~------------~~~~~~~ 142 (349)
+. .....++||+-. ..+ +...+.+
T Consensus 88 ~~vh~~g~~i~~QL~H~Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA 167 (365)
T 2gou_A 88 EAVHAKGCAIFAQLWHVGRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVIADYRQAA 167 (365)
T ss_dssp HHHHHHSCEEEEEEECCTTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEeecCCCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 11 125678999630 112 3445667
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc--ccCC-C-CCCch-HHHHHHHHHhcCC-cEEEEEecC--
Q 018919 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQG-L-DLGKM-DEDVKWLQTITKL-PILVKGVLT-- 214 (349)
Q Consensus 143 ~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~-~~~~~-~~~i~~i~~~~~~-pv~vK~v~~-- 214 (349)
+++.++|+|+|+||..|.. +-+.|..|.. ..+ ...+ + ....+ .+.++.+|+.++- ||.+|+...
T Consensus 168 ~~a~~aGfDgVeih~a~gY-------Ll~qFlsp~~-N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~ 239 (365)
T 2gou_A 168 LNAMEAGFDGIELHAANGY-------LINQFIDSEA-NNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTT 239 (365)
T ss_dssp HHHHHTTCSEEEEECCTTS-------HHHHHHSGGG-CCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCC
T ss_pred HHHHHcCCCEEEEecccch-------hHhhccCCCc-cCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccc
Confidence 7788999999999987621 1111211210 000 0001 0 12345 6789999998843 999998752
Q ss_pred ---------HHH----HHHHHHcCCCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh
Q 018919 215 ---------AED----ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 215 ---------~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~ 280 (349)
.++ ++.+.++|+|+|.+++... ...+ ..++.+.++++.+ ++|||+.||| +++++.++|+.
T Consensus 240 ~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~---~~~~~~~~~~~~~i~~~~--~iPvi~~Ggi-~~~~a~~~l~~ 313 (365)
T 2gou_A 240 LNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDW---DDAPDTPVSFKRALREAY--QGVLIYAGRY-NAEKAEQAIND 313 (365)
T ss_dssp TTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBT---TBCCCCCHHHHHHHHHHC--CSEEEEESSC-CHHHHHHHHHT
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc---CCCCCccHHHHHHHHHHC--CCcEEEeCCC-CHHHHHHHHHC
Confidence 233 7889999999999976321 1111 1356777888877 7999999999 99999999999
Q ss_pred C-CCEEEEchHHHH
Q 018919 281 G-ASGIFIGRPVVY 293 (349)
Q Consensus 281 G-A~~V~ig~~~l~ 293 (349)
| ||+|++||+++.
T Consensus 314 g~aD~V~igR~~i~ 327 (365)
T 2gou_A 314 GLADMIGFGRPFIA 327 (365)
T ss_dssp TSCSEEECCHHHHH
T ss_pred CCcceehhcHHHHh
Confidence 8 999999999985
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-13 Score=132.25 Aligned_cols=219 Identities=15% Similarity=0.101 Sum_probs=143.2
Q ss_pred ceeEcCeecCcceeecccccccccCCh---hhHHHHHHHHHcCCeEEecCCCCC--------------CHH------HHH
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPE---GEYATARAASAAGTIMTLSSWSTS--------------SVE------EVA 118 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~---~~~~la~aa~~~G~~~~~~~~~~~--------------~~e------~i~ 118 (349)
..+|.+.+++++|++|||+...-.+++ .+..+..-++++|+.++++++... +.+ .+.
T Consensus 8 P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rAg~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~ 87 (364)
T 1vyr_A 8 PLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKIT 87 (364)
T ss_dssp CEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHHHHHH
T ss_pred CeeECCEEECCccEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEEccccccccccCCCCCcccCCHHHHHHHHHHH
Confidence 477889999999999999865310222 355666667777888777654210 122 222
Q ss_pred h---hCCCceEEEEeec-----------------------------------------CCh------------hHHHHHH
Q 018919 119 S---TGPGIRFFQLYVY-----------------------------------------KDR------------NVVAQLV 142 (349)
Q Consensus 119 ~---~~~~~~~~Ql~~~-----------------------------------------~~~------------~~~~~~~ 142 (349)
+ ......++||+-. ..+ +...+.+
T Consensus 88 ~~vh~~g~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA 167 (364)
T 1vyr_A 88 AGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAV 167 (364)
T ss_dssp HHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEeccCCcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 1 1235678999720 112 2445677
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc--ccCC--CCCCch-HHHHHHHHHhcC-CcEEEEEecC--
Q 018919 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQG--LDLGKM-DEDVKWLQTITK-LPILVKGVLT-- 214 (349)
Q Consensus 143 ~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~--~~~~~~-~~~i~~i~~~~~-~pv~vK~v~~-- 214 (349)
++++++|+|+|+||..|. + +-++|..|. ...+ ...+ .....+ .+.++.+|+.++ -||.+|+...
T Consensus 168 ~~a~~aGfDgVeih~a~G---y----Ll~qFlsp~-~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~ 239 (364)
T 1vyr_A 168 ANAREAGFDLVELHSAHG---Y----LLHQFLSPS-SNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGT 239 (364)
T ss_dssp HHHHHTTCSEEEEEECTT---S----HHHHHHCTT-TCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSC
T ss_pred HHHHHcCCCEEEEcCccc---h----HHHhccCCc-ccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccc
Confidence 788899999999999762 1 111221121 0000 0001 012345 678999999984 3999998642
Q ss_pred ----------HH----HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh
Q 018919 215 ----------AE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 215 ----------~~----~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~ 280 (349)
.+ .++.+.++|+|+|.+++.+..+... ..++.+.++++.+ ++|||+.||| +++++.++|+.
T Consensus 240 ~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~--~~~~~~~~v~~~~--~iPvi~~Ggi-t~~~a~~~l~~ 314 (364)
T 1vyr_A 240 FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKP--YSEAFRQKVRERF--HGVIIGAGAY-TAEKAEDLIGK 314 (364)
T ss_dssp BTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCC--CCHHHHHHHHHHC--CSEEEEESSC-CHHHHHHHHHT
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCc--ccHHHHHHHHHHC--CCCEEEECCc-CHHHHHHHHHC
Confidence 22 3788899999999997632111111 1356777888877 7999999999 89999999999
Q ss_pred C-CCEEEEchHHHH
Q 018919 281 G-ASGIFIGRPVVY 293 (349)
Q Consensus 281 G-A~~V~ig~~~l~ 293 (349)
| ||+|++||+++.
T Consensus 315 g~aD~V~~gR~~l~ 328 (364)
T 1vyr_A 315 GLIDAVAFGRDYIA 328 (364)
T ss_dssp TSCSEEEESHHHHH
T ss_pred CCccEEEECHHHHh
Confidence 8 999999999985
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-14 Score=136.10 Aligned_cols=218 Identities=15% Similarity=0.138 Sum_probs=140.3
Q ss_pred ceeEcCeecCcceeecccccccccCCh---hhHHHHHHHHHcCCeEEecCCCCC--------------CHH------HHH
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPE---GEYATARAASAAGTIMTLSSWSTS--------------SVE------EVA 118 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~---~~~~la~aa~~~G~~~~~~~~~~~--------------~~e------~i~ 118 (349)
..+|.+.+++++|++|||+...- ++ .+..+..-++++|+.++++++... +.+ .+.
T Consensus 14 P~~ig~~~l~NRiv~aPm~~~~a--~~g~pt~~~~~~y~~rA~~GLiitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~ 91 (377)
T 2r14_A 14 PLQLGSLSLPNRVIMAPLTRSRT--PDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVV 91 (377)
T ss_dssp CEEETTEEESCSEEECCCCCCCC--TTSCCCHHHHHHHHHTTTSSCEEEEEEESSGGGCCBTTCCBSSSHHHHHHHHHHH
T ss_pred CeeECCEEecCCeEECCCcCCcC--CCCCCCHHHHHHHHHHhcCCEEEEcceeeccccccCCCCcccCCHHHHHHHHHHH
Confidence 47888999999999999986421 22 355666667777777666544211 122 222
Q ss_pred h---hCCCceEEEEeec------------------------------------------CCh------------hHHHHH
Q 018919 119 S---TGPGIRFFQLYVY------------------------------------------KDR------------NVVAQL 141 (349)
Q Consensus 119 ~---~~~~~~~~Ql~~~------------------------------------------~~~------------~~~~~~ 141 (349)
+ ......++||+.. ..+ +...+.
T Consensus 92 ~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~a 171 (377)
T 2r14_A 92 EAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQA 171 (377)
T ss_dssp HHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHH
T ss_pred HHHhhcCCeEEEEccCCccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCCHHHHHHHHHHHHHH
Confidence 1 1235678999641 112 244567
Q ss_pred HHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc--ccCC-C-CCCch-HHHHHHHHHhcCC-cEEEEEecC-
Q 018919 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQG-L-DLGKM-DEDVKWLQTITKL-PILVKGVLT- 214 (349)
Q Consensus 142 ~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~-~~~~~-~~~i~~i~~~~~~-pv~vK~v~~- 214 (349)
+++++++|+|+|+||..|. + +-++|..|.. ..+ ...+ + ....+ .+.++.+|+.++- ||.+|+...
T Consensus 172 A~~a~~aGfDgVEIh~a~G---Y----Ll~QFlsp~~-N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~ 243 (377)
T 2r14_A 172 AQRAKRAGFDMVEVHAANA---C----LPNQFLATGT-NRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFL 243 (377)
T ss_dssp HHHHHHHTCSEEEEEECTT---C----HHHHHHSTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred HHHHHHcCCCEEEEcCccc---c----hHHhccCCcc-ccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEecccc
Confidence 7788899999999998762 1 1122221210 000 0001 0 12234 6789999999853 999998532
Q ss_pred ----------H----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh
Q 018919 215 ----------A----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 215 ----------~----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~ 280 (349)
. +.++.+.++|+|+|.+++....+...+ ..++.+.++++.+ ++|||+.||| +++++.++|+.
T Consensus 244 ~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~-~~~~~~~~ik~~~--~iPvi~~Ggi-~~~~a~~~l~~ 319 (377)
T 2r14_A 244 ELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDIT-YPEGFREQMRQRF--KGGLIYCGNY-DAGRAQARLDD 319 (377)
T ss_dssp CCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------C-CCTTHHHHHHHHC--CSEEEEESSC-CHHHHHHHHHT
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCc-chHHHHHHHHHHC--CCCEEEECCC-CHHHHHHHHHC
Confidence 2 347888999999999975321111111 1356677888877 7999999999 69999999998
Q ss_pred C-CCEEEEchHHHH
Q 018919 281 G-ASGIFIGRPVVY 293 (349)
Q Consensus 281 G-A~~V~ig~~~l~ 293 (349)
| ||+|++||+++.
T Consensus 320 g~aD~V~igR~~l~ 333 (377)
T 2r14_A 320 NTADAVAFGRPFIA 333 (377)
T ss_dssp TSCSEEEESHHHHH
T ss_pred CCceEEeecHHHHh
Confidence 8 999999999985
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=162.17 Aligned_cols=210 Identities=16% Similarity=0.193 Sum_probs=142.8
Q ss_pred ccccccCC-CCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH-------Hh
Q 018919 48 FRPRILID-VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------AS 119 (349)
Q Consensus 48 l~p~~l~~-~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i-------~~ 119 (349)
|.||..+. -.+++++|.|...--..||+.|||++.. .+..|+.+++++|..++++.....+.+++ ++
T Consensus 558 f~prlv~~~~~~~~l~t~~t~~lg~~PIi~a~M~~~v-----s~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~vk~ 632 (2060)
T 2uva_G 558 HGPRLVKTSVGQTFVDTKMSRLLGVPPVMVAGMTPTT-----VPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISKIEK 632 (2060)
T ss_dssp HCCEEEECTTCCEEEECHHHHHHTSCSEEECCCTTTT-----CSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHHHGG
T ss_pred cCCcceecCCCceecchhhhhccccceEEecCCCCcc-----ccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHHHHh
Confidence 56776642 2344556554321115899999998421 14589999999999999943334455443 22
Q ss_pred hC-C-CceEEEEeecCChh---HHHHHHHHHHHcCCCE--EEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch
Q 018919 120 TG-P-GIRFFQLYVYKDRN---VVAQLVRRAERAGFKA--IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (349)
Q Consensus 120 ~~-~-~~~~~Ql~~~~~~~---~~~~~~~~~~~~G~~~--i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (349)
.. | .++.+++... ++. ...+.++.+.+.|++. +.+..+.| ..
T Consensus 633 ~~~~~~p~gvN~~~~-~p~~~~~~~~~~~~~~~~gv~i~gv~~~~G~p------------------------------~~ 681 (2060)
T 2uva_G 633 AIPPGRGITVNLIYV-NPRAMGWQIPLLGRLRADGVPIEGLTIGAGVP------------------------------SI 681 (2060)
T ss_dssp GSCTTCCEEEEEETT-CTTHHHHHHHHHHHHHTTTCCEEEEEEESSCC------------------------------CH
T ss_pred hcccCCCeEeccccc-CcccchhHHHHHHHHHHcCCCcceEeecCCCC------------------------------CH
Confidence 23 2 5667776542 333 2457788888999998 55544322 11
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHH----HHcCCCEEE---Eec--CCCC-C-CCCchhhHHHHHHHHHHhcCCCc
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIA----VQAGAAGII---VSN--HGAR-Q-LDYVPATIMALEEVVKATQGRIP 261 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a----~~~G~d~I~---v~~--~gg~-~-~~~~~~~~~~l~~i~~~~~~~ip 261 (349)
.+.++.+++ .+++++ +.+.+..+++.+ .++|+|+|+ +.+ .||+ . .+...+.+..++++++.+ ++|
T Consensus 682 e~~~~~l~~-~gi~~i-~~v~~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~--~ip 757 (2060)
T 2uva_G 682 EVANEYIQT-LGIRHI-SFKPGSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCS--NIV 757 (2060)
T ss_dssp HHHHHHHHH-SCCSEE-EECCCSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTST--TEE
T ss_pred HHHHHHHHH-cCCeEE-EecCCHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHc--CCC
Confidence 123444444 589987 567777777766 999999999 654 2332 1 233466788899998876 799
Q ss_pred EEEecCCCCHHHHHHHH-----------HhCCCEEEEchHHHHHHhh
Q 018919 262 VFLDGGVRRGTDVFKAL-----------ALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 262 via~GGI~~~~dv~kal-----------~~GA~~V~ig~~~l~~~~~ 297 (349)
||++|||.+++|++++| ++|||+|++||.|+....+
T Consensus 758 viaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t~Ea 804 (2060)
T 2uva_G 758 LVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTAKEA 804 (2060)
T ss_dssp EEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGBTTS
T ss_pred EEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcCcCC
Confidence 99999999999999999 9999999999999865444
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-13 Score=123.23 Aligned_cols=178 Identities=17% Similarity=0.082 Sum_probs=119.9
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceE---EEEeecCCh--hHHHHHHHHHHHcCCCEEEEec
Q 018919 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF---FQLYVYKDR--NVVAQLVRRAERAGFKAIALTV 157 (349)
Q Consensus 83 ~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~---~Ql~~~~~~--~~~~~~~~~~~~~G~~~i~i~~ 157 (349)
.|.++..-..+|+++.+.|+..+- ..+...++++++....|.+ .+.|...+. ..+.+.++.+.++|++.+.+..
T Consensus 31 pl~~~~~~~~~A~a~~~~Ga~~i~-~~~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~ 109 (229)
T 3q58_A 31 PMDKPEIVAAMAQAAASAGAVAVR-IEGIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDA 109 (229)
T ss_dssp TTCSHHHHHHHHHHHHHTTCSEEE-EESHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEEC
T ss_pred CCCCcchHHHHHHHHHHCCCcEEE-ECCHHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECc
Confidence 344555556899999999999753 2222223334433333322 122211100 0123457778899999987543
Q ss_pred CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCC
Q 018919 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA 236 (349)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg 236 (349)
.. ..+|+. .+.++.+++. ++++++ .+.+.++++++.++|+|.|.+.++|.
T Consensus 110 ~~---------------------------~~~p~~l~~~i~~~~~~-g~~v~~-~v~t~eea~~a~~~Gad~Ig~~~~g~ 160 (229)
T 3q58_A 110 SF---------------------------RSRPVDIDSLLTRIRLH-GLLAMA-DCSTVNEGISCHQKGIEFIGTTLSGY 160 (229)
T ss_dssp CS---------------------------SCCSSCHHHHHHHHHHT-TCEEEE-ECSSHHHHHHHHHTTCSEEECTTTTS
T ss_pred cc---------------------------cCChHHHHHHHHHHHHC-CCEEEE-ecCCHHHHHHHHhCCCCEEEecCccC
Confidence 21 012333 4668888764 787776 57899999999999999997766654
Q ss_pred CCC-CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 237 RQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 237 ~~~-~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.. ....++++.+.++++. ++|||+.|||++++|+.+++++||++|++|++++.
T Consensus 161 t~~~~~~~~~~~li~~l~~~---~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~ 215 (229)
T 3q58_A 161 TGPITPVEPDLAMVTQLSHA---GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITR 215 (229)
T ss_dssp SSSCCCSSCCHHHHHHHHTT---TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred CCCCcCCCCCHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcC
Confidence 321 1234578888887763 79999999999999999999999999999999874
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-13 Score=128.75 Aligned_cols=146 Identities=15% Similarity=0.083 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc--ccCC-C-CCCch-HHHHHHHHHhcC-CcEEEE
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQG-L-DLGKM-DEDVKWLQTITK-LPILVK 210 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~-~~~~~-~~~i~~i~~~~~-~pv~vK 210 (349)
...+.+++++++|+|+|+||..+- + +-++|..|. ...+ ...+ + ....+ .+.++.+|+.++ .||.+|
T Consensus 172 ~f~~AA~~a~~AGfDgVEIh~ahG---Y----Ll~QFLsp~-~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vR 243 (402)
T 2hsa_B 172 DYRRSALNAIEAGFDGIEIHGAHG---Y----LIDQFLKDG-INDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVR 243 (402)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTT---S----HHHHHHCTT-TCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCccc---h----HHHhccCCc-cCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 455777888899999999998761 1 112222221 0000 0111 1 12345 678999999985 499999
Q ss_pred EecC---------------HHHHHHHHHcC------CCEEEEecCCCCCCCC--------chhhHHHHHHHHHHhcCCCc
Q 018919 211 GVLT---------------AEDARIAVQAG------AAGIIVSNHGARQLDY--------VPATIMALEEVVKATQGRIP 261 (349)
Q Consensus 211 ~v~~---------------~~~a~~a~~~G------~d~I~v~~~gg~~~~~--------~~~~~~~l~~i~~~~~~~ip 261 (349)
+... .+.++.+.++| +|+|.+++....+... +...++.+.++++.+ ++|
T Consensus 244 ls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~--~iP 321 (402)
T 2hsa_B 244 VSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAY--QGT 321 (402)
T ss_dssp ECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHC--SSC
T ss_pred eccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHC--CCC
Confidence 7632 24478888999 9999997532111011 112456677788877 799
Q ss_pred EEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 262 VFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 262 via~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
||++||| +++++.++|+.| ||+|++||+++.
T Consensus 322 vi~~G~i-~~~~a~~~l~~g~aD~V~igR~~l~ 353 (402)
T 2hsa_B 322 FICSGGY-TRELGIEAVAQGDADLVSYGRLFIS 353 (402)
T ss_dssp EEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred EEEeCCC-CHHHHHHHHHCCCCceeeecHHHHh
Confidence 9999999 999999999987 999999999985
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-12 Score=122.29 Aligned_cols=145 Identities=22% Similarity=0.282 Sum_probs=101.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc--ccCC-CC-CCch-HHHHHHHHHhc--CCcEEEEE
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQG-LD-LGKM-DEDVKWLQTIT--KLPILVKG 211 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~~-~~~~-~~~i~~i~~~~--~~pv~vK~ 211 (349)
.+.+++++++|+|+|+||..|- + +-++|..|.. ..+ ...+ +. ...+ .+.++.+|+.+ +.||.+|.
T Consensus 155 ~~aA~~a~~aGfDgVEih~a~G---y----Ll~qFlsp~~-N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRl 226 (349)
T 3hgj_A 155 VEGARRALRAGFQVIELHMAHG---Y----LLSSFLSPLS-NQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRV 226 (349)
T ss_dssp HHHHHHHHHTTCCEEEEEECTT---S----HHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEE
T ss_pred HHHHHHHHHcCCCEEEECCccc---h----HHHHhcCCcc-cccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 3556777889999999999872 1 1122222210 000 0011 11 1235 67899999998 68999998
Q ss_pred ec--------CHHH----HHHHHHcCCCEEEEecCCCCC---CCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 018919 212 VL--------TAED----ARIAVQAGAAGIIVSNHGARQ---LDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 212 v~--------~~~~----a~~a~~~G~d~I~v~~~gg~~---~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 275 (349)
.. +.++ ++.+.++|+|+|.+++.+-.. ...++ ..++.+.++++.+ ++||++.|||++++++.
T Consensus 227 s~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~t~e~a~ 304 (349)
T 3hgj_A 227 SATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRV--GLRTGAVGLITTPEQAE 304 (349)
T ss_dssp ESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHH--CCEEEECSSCCCHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHc--CceEEEECCCCCHHHHH
Confidence 74 3444 788889999999998532111 11122 3567788888877 79999999999999999
Q ss_pred HHHHhC-CCEEEEchHHHH
Q 018919 276 KALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 276 kal~~G-A~~V~ig~~~l~ 293 (349)
++|+.| ||+|++||+++.
T Consensus 305 ~~l~~G~aD~V~iGR~~la 323 (349)
T 3hgj_A 305 TLLQAGSADLVLLGRVLLR 323 (349)
T ss_dssp HHHHTTSCSEEEESTHHHH
T ss_pred HHHHCCCceEEEecHHHHh
Confidence 999999 999999999985
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.7e-13 Score=119.71 Aligned_cols=178 Identities=15% Similarity=0.063 Sum_probs=119.2
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEE---eecCCh--hHHHHHHHHHHHcCCCEEEEec
Q 018919 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQL---YVYKDR--NVVAQLVRRAERAGFKAIALTV 157 (349)
Q Consensus 83 ~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql---~~~~~~--~~~~~~~~~~~~~G~~~i~i~~ 157 (349)
.|.++..-..+|+++.+.|+..+. ..+...++++++....|.+-+. |...+. ....+.++.+.++|++.+.+..
T Consensus 31 pl~~~~~~~~~A~a~~~~Ga~~i~-~~~~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~ 109 (232)
T 3igs_A 31 PLDKPEIVAAMALAAEQAGAVAVR-IEGIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDG 109 (232)
T ss_dssp TTCSHHHHHHHHHHHHHTTCSEEE-EESHHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEEC
T ss_pred CCCCcchHHHHHHHHHHCCCeEEE-ECCHHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECc
Confidence 344455556899999999999653 2222223334433333322111 111000 0123457778899999987543
Q ss_pred CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCC
Q 018919 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA 236 (349)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg 236 (349)
.. ..+|.. .+.++.+++. ++++++ .+.+.++++++.++|+|.|.+.++|.
T Consensus 110 ~~---------------------------~~~p~~l~~~i~~~~~~-g~~v~~-~v~t~eea~~a~~~Gad~Ig~~~~g~ 160 (232)
T 3igs_A 110 TA---------------------------RQRPVAVEALLARIHHH-HLLTMA-DCSSVDDGLACQRLGADIIGTTMSGY 160 (232)
T ss_dssp CS---------------------------SCCSSCHHHHHHHHHHT-TCEEEE-ECCSHHHHHHHHHTTCSEEECTTTTS
T ss_pred cc---------------------------cCCHHHHHHHHHHHHHC-CCEEEE-eCCCHHHHHHHHhCCCCEEEEcCccC
Confidence 21 012333 4567777764 787776 57899999999999999997766654
Q ss_pred CCC-CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 237 RQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 237 ~~~-~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.. ....++++.+.++++. ++|||+.|||++++|+.+++++||++|+||++++.
T Consensus 161 t~~~~~~~~~~~~i~~l~~~---~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~ 215 (232)
T 3igs_A 161 TTPDTPEEPDLPLVKALHDA---GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITR 215 (232)
T ss_dssp SSSSCCSSCCHHHHHHHHHT---TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcC
Confidence 321 1234578888888764 79999999999999999999999999999999873
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.1e-13 Score=128.63 Aligned_cols=146 Identities=16% Similarity=0.064 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc--ccCC-C-CCCch-HHHHHHHHHhcCC-cEEEE
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQG-L-DLGKM-DEDVKWLQTITKL-PILVK 210 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~-~~~~~-~~~i~~i~~~~~~-pv~vK 210 (349)
...+.+++++++|+|+|+||..|. + +-++|..|. ...+ ...+ + ....+ .+.++.+|+.++- ||.+|
T Consensus 168 ~f~~AA~~a~~aGfDgVEih~a~G---y----Ll~qFlsp~-~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vr 239 (376)
T 1icp_A 168 EFRVAARNAIEAGFDGVEIHGAHG---Y----LIDQFMKDQ-VNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIR 239 (376)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTT---S----HHHHHHCTT-TCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccc---h----hhhhccCCc-ccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEE
Confidence 445677788899999999999762 1 111222121 0000 0011 0 12234 6789999999853 99999
Q ss_pred EecC---------------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 018919 211 GVLT---------------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 211 ~v~~---------------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 275 (349)
.... .+.++.+.++|+|+|.+++....+...+...++.+.++++.+ ++|||+.||| +++++.
T Consensus 240 ls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~--~iPvi~~G~i-~~~~a~ 316 (376)
T 1icp_A 240 ISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAY--KGTFIVAGGY-DREDGN 316 (376)
T ss_dssp ECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHC--CSCEEEESSC-CHHHHH
T ss_pred eccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHc--CCCEEEeCCC-CHHHHH
Confidence 8631 245788889999999997532111101111234456677777 7999999999 899999
Q ss_pred HHHHhC-CCEEEEchHHHH
Q 018919 276 KALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 276 kal~~G-A~~V~ig~~~l~ 293 (349)
++|+.| ||+|++||+++.
T Consensus 317 ~~l~~g~aD~V~~gR~~l~ 335 (376)
T 1icp_A 317 RALIEDRADLVAYGRLFIS 335 (376)
T ss_dssp HHHHTTSCSEEEESHHHHH
T ss_pred HHHHCCCCcEEeecHHHHh
Confidence 999987 999999999985
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.5e-12 Score=119.45 Aligned_cols=213 Identities=16% Similarity=0.164 Sum_probs=135.3
Q ss_pred ceeEcCeecCcceeecccccccccC----C-hhhHHHHHHHHHcCCeEEecCCCC--------------CCHHH------
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAH----P-EGEYATARAASAAGTIMTLSSWST--------------SSVEE------ 116 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~----~-~~~~~la~aa~~~G~~~~~~~~~~--------------~~~e~------ 116 (349)
..+|.++++++-|+.|||.... .. | +.....-..-++.|+.+++++... .+.+.
T Consensus 7 P~~ig~~~l~NRiv~apm~~~~-~~~~g~~t~~~~~yy~~rA~gG~Gliite~~~V~~~g~~~~~~~gi~~d~~i~~~~~ 85 (343)
T 3kru_A 7 PLKIKDITIKNRIMMSPMCMYS-ASTDGMPNDWHIVHYATRAIGGVGLIMQEATAVESRGRITDHDLGIWNDEQVKELKK 85 (343)
T ss_dssp CEEETTEEESSSEEECCCCCCC-SCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSHHHHHHHHH
T ss_pred cceeeeeeeeeeecccchhhee-cccCCCCCceeeeeeehhhccceeeeeehhhhhhhcCccccccccccCHHHHHHHHH
Confidence 4778899999999999997432 22 2 112233333444566666643211 11121
Q ss_pred HHh---hCCCceEEEEeecC-----------------------Ch------------hHHHHHHHHHHHcCCCEEEEec-
Q 018919 117 VAS---TGPGIRFFQLYVYK-----------------------DR------------NVVAQLVRRAERAGFKAIALTV- 157 (349)
Q Consensus 117 i~~---~~~~~~~~Ql~~~~-----------------------~~------------~~~~~~~~~~~~~G~~~i~i~~- 157 (349)
+.+ ......++||.-.. .+ +...+.+++++++|+|+|+||.
T Consensus 86 ~~~~vh~~G~~i~~QL~H~Gr~~~~~g~~~~apS~i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVEih~a 165 (343)
T 3kru_A 86 IVDICKANGAVMGIQLAHAGRKCNISYEDVVGPSPIKAGDRYKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAA 165 (343)
T ss_dssp HHHHHHHTTCEEEEEEECCGGGCCCTTSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred HHHHHhcCCceEeeehhhccCccCcchhhccCCCcCCCCccccCchhcCHHHHHHHHHHHHHHHhhccccCCceEEEecc
Confidence 221 12345678884310 00 1133556777889999999994
Q ss_pred --------CCCCCCchhHHhhhhcCCCCcCcccccCCC-CCCch-HHHHHHHHHhc--CCcEEEEEecC--------H--
Q 018919 158 --------DTPRLGRREADIKNRFTLPPFLTLKNFQGL-DLGKM-DEDVKWLQTIT--KLPILVKGVLT--------A-- 215 (349)
Q Consensus 158 --------d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~-~~~~~-~~~i~~i~~~~--~~pv~vK~v~~--------~-- 215 (349)
-||....|.. .-+.++ ....+ .+.++.+|+.+ +.||.+|+..+ .
T Consensus 166 hGYLl~qFlsp~~N~R~D--------------~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~ 231 (343)
T 3kru_A 166 HGYLIHEFLSPLSNKRKD--------------EYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDM 231 (343)
T ss_dssp TTSHHHHHHCTTTCCCCS--------------TTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHH
T ss_pred cchhHHHhhcccccccch--------------hhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHH
Confidence 3443211110 000001 12345 78899999998 68999999752 3
Q ss_pred --HHHHHHHHcCCCEEEEecCCCCCC---CCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q 018919 216 --EDARIAVQAGAAGIIVSNHGARQL---DYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIG 288 (349)
Q Consensus 216 --~~a~~a~~~G~d~I~v~~~gg~~~---~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig 288 (349)
+.++.+.++ +|+|.++. |+... ...+ ..++.+.++++.+ ++|||++|||++++++.++|+.| ||+|++|
T Consensus 232 ~~~~a~~l~~~-vd~i~vs~-g~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iG 307 (343)
T 3kru_A 232 MVEYINMIKDK-VDLIDVSS-GGLLNVDINLYPGYQVKYAETIKKRC--NIKTSAVGLITTQELAEEILSNERADLVALG 307 (343)
T ss_dssp HHHHHHHHTTT-CSEEEEEC-CCSSCCCCCCCTTTTHHHHHHHHHHH--TCEEEEESSCCCHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHHhhcc-ccEEeccC-CceEeeeecccCceeehHHHHHHHhc--CcccceeeeeeHHHHHHHHHhchhhHHHHHH
Confidence 346778888 99999973 22210 1112 2467778888887 79999999999999999999998 9999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
|+++.
T Consensus 308 R~~la 312 (343)
T 3kru_A 308 RELLR 312 (343)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99985
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-12 Score=112.94 Aligned_cols=173 Identities=17% Similarity=0.156 Sum_probs=119.1
Q ss_pred hhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecC--Ch----hHHHHHHHHHHHcCCCEEEEecCCCC
Q 018919 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYK--DR----NVVAQLVRRAERAGFKAIALTVDTPR 161 (349)
Q Consensus 88 ~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~--~~----~~~~~~~~~~~~~G~~~i~i~~d~p~ 161 (349)
+....+++++.+.|+.++.. .+...++++++....+. +.+.... +. ....+.++.+.++|++.+.++...-
T Consensus 23 ~~~~~~a~~~~~~Ga~~i~~-~~~~~i~~i~~~~~~pv-~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~- 99 (223)
T 1y0e_A 23 FIMSKMALAAYEGGAVGIRA-NTKEDILAIKETVDLPV-IGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQ- 99 (223)
T ss_dssp HHHHHHHHHHHHHTCSEEEE-ESHHHHHHHHHHCCSCE-EEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCS-
T ss_pred ccHHHHHHHHHHCCCeeecc-CCHHHHHHHHHhcCCCE-EeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEeeecc-
Confidence 34568999999999886532 22222344554433232 2111100 00 0123456777889999988765321
Q ss_pred CCchhHHhhhhcCCCCcCcccccCCCCCC-ch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 162 LGRREADIKNRFTLPPFLTLKNFQGLDLG-KM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ 238 (349)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~-~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~ 238 (349)
.+| .. .+.++++++.+ +.++++ .+.++++++.+.++|+|.|.++++|.+.
T Consensus 100 --------------------------~~p~~~~~~~i~~~~~~~~~~~v~~-~~~t~~e~~~~~~~G~d~i~~~~~g~t~ 152 (223)
T 1y0e_A 100 --------------------------QRPKETLDELVSYIRTHAPNVEIMA-DIATVEEAKNAARLGFDYIGTTLHGYTS 152 (223)
T ss_dssp --------------------------CCSSSCHHHHHHHHHHHCTTSEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSST
T ss_pred --------------------------cCcccCHHHHHHHHHHhCCCceEEe-cCCCHHHHHHHHHcCCCEEEeCCCcCcC
Confidence 012 12 56789999877 566654 6788999999999999999887765542
Q ss_pred --CCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 239 --LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 239 --~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+. ..+.++.+.++++.+ ++||+++|||++++|+.+++++|||+|++|++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~--~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~ 208 (223)
T 1y0e_A 153 YTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAIT 208 (223)
T ss_dssp TSTTCCTTHHHHHHHHHHHHHC--CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred CCCCCCCCcccHHHHHHHHhhC--CCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHc
Confidence 122 345678888888877 7999999999999999999999999999999975
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-12 Score=130.53 Aligned_cols=222 Identities=14% Similarity=0.110 Sum_probs=139.4
Q ss_pred ceeEcCeecCcceeecccccccccCChh-h--HHHHHHHHHcCCeEEecCCCCC--------------C---H---HHHH
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG-E--YATARAASAAGTIMTLSSWSTS--------------S---V---EEVA 118 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~~-~--~~la~aa~~~G~~~~~~~~~~~--------------~---~---e~i~ 118 (349)
..+|.+.+++++|++|||+...-..+.. + ...-+.-++.|+.++++++... + + ..+.
T Consensus 8 p~~ig~~~l~nRi~~apm~~~~~~~~~~~~~~~~~y~~ra~gg~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (671)
T 1ps9_A 8 PLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTIT 87 (671)
T ss_dssp CEECSSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHH
T ss_pred CeeECCEEEcCceEECCccCCcCCCCCCcHHHHHHHHHHhcCCCCEEEecccccCccccCCCCCCccCCHHHHHHHHHHH
Confidence 4678899999999999998532111211 1 2222233366777777644210 1 1 1122
Q ss_pred h---hCCCceEEEEeecC---------------------Ch------------hHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 119 S---TGPGIRFFQLYVYK---------------------DR------------NVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 119 ~---~~~~~~~~Ql~~~~---------------------~~------------~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
+ ....+.++||+... .+ +...+.+++++++|+|+|+||..+..
T Consensus 88 ~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aGfd~veih~~~gy- 166 (671)
T 1ps9_A 88 EAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGY- 166 (671)
T ss_dssp HHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTS-
T ss_pred HHHHhcCCEEEEEeccCCcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccch-
Confidence 1 12356889997520 12 34556778888999999999987621
Q ss_pred CchhHHhhhhcCCCCcCccc--ccCC-C-CCCch-HHHHHHHHHhc--CCcEEEEEec--------CH----HHHHHHHH
Q 018919 163 GRREADIKNRFTLPPFLTLK--NFQG-L-DLGKM-DEDVKWLQTIT--KLPILVKGVL--------TA----EDARIAVQ 223 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~--~~~~-~-~~~~~-~~~i~~i~~~~--~~pv~vK~v~--------~~----~~a~~a~~ 223 (349)
+-++|..|.. ..+ ...+ + ....+ .+.++.+|+.+ +.||.+|+.. +. +.++.+.+
T Consensus 167 ------l~~qFlsp~~-n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~ 239 (671)
T 1ps9_A 167 ------LINEFLTLRT-NQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEA 239 (671)
T ss_dssp ------HHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHH
T ss_pred ------HHHHhCCCcc-CCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHHHHHHh
Confidence 1122222210 000 0011 0 12345 67899999998 7899999863 23 44778889
Q ss_pred cCCCEEEEecCCCCC------CCCchh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 224 AGAAGIIVSNHGARQ------LDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 224 ~G~d~I~v~~~gg~~------~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
+|+|+|.+++....+ ....+. .++.+.++++.+ ++||++.|||.+++++.++|+.| ||+|++||+++.
T Consensus 240 ~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~ 315 (671)
T 1ps9_A 240 AGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV--SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLA 315 (671)
T ss_dssp HTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSC--SSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred cCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHh
Confidence 999999997521100 111111 246666666655 79999999999999999999998 999999999985
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.7e-12 Score=121.69 Aligned_cols=146 Identities=15% Similarity=0.188 Sum_probs=99.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc--ccCC-C-CC-Cch-HHHHHHHHHhc------CCc
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQG-L-DL-GKM-DEDVKWLQTIT------KLP 206 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~-~~-~~~-~~~i~~i~~~~------~~p 206 (349)
.+.+++++++|+|+|+||..+- + +-++|..|.. ..+ ...| + .+ ..| .+.++.+|+.+ +.|
T Consensus 173 ~~AA~rA~~AGfDgVEIH~ahG---Y----Ll~QFlSp~~-N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~ 244 (419)
T 3l5a_A 173 RDATLRAIKAGFDGVEISIAQR---L----LIQTFFSTFS-NRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFI 244 (419)
T ss_dssp HHHHHHHHHTTCSEEEEECCTT---S----HHHHHHCTTT-CCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCE
T ss_pred HHHHHHHHHcCCCEEEECCccc---h----HHHHccCCcc-cccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCee
Confidence 4566778889999999998761 1 1222322310 001 1111 1 11 245 68899999887 579
Q ss_pred EEEEEec----------CH----HHHHHHHH-cCCCEEEEecCCC-----CCCCCch-hhHHHHHHHHHHhcCCCcEEEe
Q 018919 207 ILVKGVL----------TA----EDARIAVQ-AGAAGIIVSNHGA-----RQLDYVP-ATIMALEEVVKATQGRIPVFLD 265 (349)
Q Consensus 207 v~vK~v~----------~~----~~a~~a~~-~G~d~I~v~~~gg-----~~~~~~~-~~~~~l~~i~~~~~~~ipvia~ 265 (349)
|.+|+.. +. +.++.+.+ +|+|+|.|++.+. .+...++ ..+..+..+++.+++++|||+.
T Consensus 245 v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~ 324 (419)
T 3l5a_A 245 LGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIAS 324 (419)
T ss_dssp EEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEEC
T ss_pred EEEecccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEE
Confidence 9999753 23 34777888 9999999986432 1111122 1335566777777557999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 266 GGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 266 GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
|||++++++.++|+. ||+|++||+++.
T Consensus 325 GgI~t~e~Ae~~L~~-aDlVaiGR~~Ia 351 (419)
T 3l5a_A 325 GGINSPESALDALQH-ADMVGMSSPFVT 351 (419)
T ss_dssp SSCCSHHHHHHHGGG-CSEEEESTHHHH
T ss_pred CCCCCHHHHHHHHHh-CCcHHHHHHHHH
Confidence 999999999999999 999999999974
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-11 Score=115.73 Aligned_cols=145 Identities=21% Similarity=0.189 Sum_probs=99.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc--ccCC-CCC-Cch-HHHHHHHHHhc--CCcEEEEE
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQG-LDL-GKM-DEDVKWLQTIT--KLPILVKG 211 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~~~-~~~-~~~i~~i~~~~--~~pv~vK~ 211 (349)
.+.+++++++|+|+|+||..+ |+- -+.|..|.. ..+ ...+ +.+ ..+ .+.++.+|+.+ +.||.+|+
T Consensus 161 ~~aA~~a~~aGfDgVEih~a~---GyL----l~qFlsp~~-N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRi 232 (363)
T 3l5l_A 161 VDAARRARDAGFEWIELHFAH---GYL----GQSFFSEHS-NKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARF 232 (363)
T ss_dssp HHHHHHHHHHTCSEEEEEECT---TSH----HHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEcccc---chH----HHHccCCCc-CCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 355677788999999999864 111 122222210 000 0011 111 234 67899999988 57999998
Q ss_pred ecC---------H----HHHHHHHHcCCCEEEEecCCCCC---CCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 018919 212 VLT---------A----EDARIAVQAGAAGIIVSNHGARQ---LDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDV 274 (349)
Q Consensus 212 v~~---------~----~~a~~a~~~G~d~I~v~~~gg~~---~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv 274 (349)
..+ . +.++.+.++|+|+|.+++.+... ...++ ..++.+.++++.+ ++||++.|||++++++
T Consensus 233 s~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~GgI~s~e~a 310 (363)
T 3l5l_A 233 GVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREA--KLPVTSAWGFGTPQLA 310 (363)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH--TCCEEECSSTTSHHHH
T ss_pred cchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHc--CCcEEEeCCCCCHHHH
Confidence 632 2 33788899999999998632111 11222 2467778888877 7999999999999999
Q ss_pred HHHHHhC-CCEEEEchHHHH
Q 018919 275 FKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 275 ~kal~~G-A~~V~ig~~~l~ 293 (349)
.++|+.| ||+|++||+++.
T Consensus 311 ~~~l~~G~aD~V~iGR~~la 330 (363)
T 3l5l_A 311 EAALQANQLDLVSVGRAHLA 330 (363)
T ss_dssp HHHHHTTSCSEEECCHHHHH
T ss_pred HHHHHCCCccEEEecHHHHh
Confidence 9999998 999999999985
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=129.71 Aligned_cols=221 Identities=13% Similarity=0.102 Sum_probs=136.8
Q ss_pred ceeEcCeecCcceeecccccccc-cCChhhHHHHHHHHHcCCeEEecCCCC---------C------CHH------HHHh
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKM-AHPEGEYATARAASAAGTIMTLSSWST---------S------SVE------EVAS 119 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l-~~~~~~~~la~aa~~~G~~~~~~~~~~---------~------~~e------~i~~ 119 (349)
..+|.+++++++|++|||+...- ..|.....+-+.-++.|+.++++++.. . +.+ .+.+
T Consensus 12 p~~ig~~~l~NRiv~apm~~~~~~~~~~~~~~~y~~ra~gG~Gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (729)
T 1o94_A 12 PIQIGPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTD 91 (729)
T ss_dssp CEEETTEEESSSEEECCCCCSCTTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHHH
T ss_pred CeeECCEEECCccEECCCcCCcCCCCcHHHHHHHHHHhcCCCCEEEEcceEecCcccCCCCCCCccCChHHhHHHHHHHH
Confidence 47788999999999999975321 122211222223336677777653310 0 111 1211
Q ss_pred -h--CCCceEEEEeecC--------------------------C------------hhHHHHHHHHHHHcCCCEEEEecC
Q 018919 120 -T--GPGIRFFQLYVYK--------------------------D------------RNVVAQLVRRAERAGFKAIALTVD 158 (349)
Q Consensus 120 -~--~~~~~~~Ql~~~~--------------------------~------------~~~~~~~~~~~~~~G~~~i~i~~d 158 (349)
. ...+.++||+... . .+...+.+++++++|+|+|+||..
T Consensus 92 ~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~p~~~t~~eI~~~i~~f~~aA~~a~~aGfDgVEih~a 171 (729)
T 1o94_A 92 EVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGA 171 (729)
T ss_dssp HHHTTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHhCCCeEEEEecCCCccccccccCCCCcCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 1 2256789997620 0 134456778888999999999987
Q ss_pred CCCCCchhHHhhhhcCCCCcCccc--ccCC-C-CCCch-HHHHHHHHHhc--CCcEEEEEec---------C-H----HH
Q 018919 159 TPRLGRREADIKNRFTLPPFLTLK--NFQG-L-DLGKM-DEDVKWLQTIT--KLPILVKGVL---------T-A----ED 217 (349)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~-~~~~~-~~~i~~i~~~~--~~pv~vK~v~---------~-~----~~ 217 (349)
+. + +-++|..|. ...+ ...| + ....| .+.++.+|+.+ +.||.+|+.. + . +.
T Consensus 172 ~g---y----Ll~qFlsp~-~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~~~~~~~~ 243 (729)
T 1o94_A 172 HS---Y----LPLQFLNPY-YNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKF 243 (729)
T ss_dssp TT---C----HHHHHHCTT-TCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHH
T ss_pred cc---h----HHHHhcCCc-cCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCchHHHHHH
Confidence 72 1 122232221 0000 0111 1 12456 78899999998 7899999963 1 2 23
Q ss_pred HHHHHHcCCCEEEEecCCC-----C---CCCCchh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEE
Q 018919 218 ARIAVQAGAAGIIVSNHGA-----R---QLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFI 287 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg-----~---~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~i 287 (349)
++.+.+ |+|.+.+++.+. . +....+. .+..+.++++.+ ++|||+.|||.+++++.++|+.| ||+|++
T Consensus 244 ~~~l~~-~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~ 320 (729)
T 1o94_A 244 VEMADS-LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS--KKPVLGVGRYTDPEKMIEIVTKGYADIIGC 320 (729)
T ss_dssp HHHHGG-GCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC--SSCEECCSCCCCHHHHHHHHHTTSCSBEEE
T ss_pred HHHHHh-hcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHC--CCEEEEeCCCCCHHHHHHHHHCCCCCEEEe
Confidence 444444 899999875321 0 1111111 356677777766 79999999999999999999987 999999
Q ss_pred chHHHH
Q 018919 288 GRPVVY 293 (349)
Q Consensus 288 g~~~l~ 293 (349)
||+++.
T Consensus 321 gR~~l~ 326 (729)
T 1o94_A 321 ARPSIA 326 (729)
T ss_dssp SHHHHH
T ss_pred Cchhhc
Confidence 999974
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-11 Score=126.33 Aligned_cols=221 Identities=13% Similarity=0.042 Sum_probs=137.0
Q ss_pred ceeEcCeecCcceeecccccccccCChhh--HHHHHHHHHcCCeEEecCCCCC---------------C---HH---HHH
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGE--YATARAASAAGTIMTLSSWSTS---------------S---VE---EVA 118 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~~~--~~la~aa~~~G~~~~~~~~~~~---------------~---~e---~i~ 118 (349)
..+|.+++++++|++|||+... ..+..+ ..+.+..++.|+.++++++... + ++ ++.
T Consensus 17 p~~ig~~~l~NRiv~apm~~~~-~~~~~~~~~~~~~~~a~gG~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (690)
T 3k30_A 17 PVQIGPFTTKNRFYQVPHCNGM-GYRDPSAQASMRKIKAEGGWSAVCTEQVEIHATSDIAPFIELRIWDDQDLPALKRIA 95 (690)
T ss_dssp CCEETTEECSSSEEECCCCCSC-SSSCHHHHHHHHHHHHHTTCSEEEEEEEECSGGGCCTTSCCEECSSGGGHHHHHHHH
T ss_pred CeeECCEEECCCeEeCCCcCCC-CCCChHHHHHHHHHHhccCCEEEEecceEeccccccCCCcCCccCCHHHHHHHHHHH
Confidence 4788899999999999997532 222211 2344456677877777643210 0 11 121
Q ss_pred h---hCCCceEEEEeecC-------------------------C---------------hhHHHHHHHHHHHcCCCEEEE
Q 018919 119 S---TGPGIRFFQLYVYK-------------------------D---------------RNVVAQLVRRAERAGFKAIAL 155 (349)
Q Consensus 119 ~---~~~~~~~~Ql~~~~-------------------------~---------------~~~~~~~~~~~~~~G~~~i~i 155 (349)
+ ......++||+-.. + .+...+.+++++++|+|+|+|
T Consensus 96 ~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~~t~~ei~~~i~~f~~aA~~a~~aGfDgVei 175 (690)
T 3k30_A 96 DAIHEGGGLAGIELAHNGMNAPNQLSRETPLGPGHLPVAPDTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIVYV 175 (690)
T ss_dssp HHHHHTTCEEEEEEECCGGGCCCTTTCCCCEESSSCBSCSSCCCSCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHhcCCEEEEEccCCcccccccccCCCccCCCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 1 12356789997310 0 133456778888999999999
Q ss_pred ecCCCCCCchhHHhhhhcCCCCcCccc--ccCC-C-CCCch-HHHHHHHHHhc--CCcEEEEEecC--------HH----
Q 018919 156 TVDTPRLGRREADIKNRFTLPPFLTLK--NFQG-L-DLGKM-DEDVKWLQTIT--KLPILVKGVLT--------AE---- 216 (349)
Q Consensus 156 ~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~-~~~~~-~~~i~~i~~~~--~~pv~vK~v~~--------~~---- 216 (349)
|..+... +-+.|..|. ...+ ...| + ....| .+.++.+|+.+ +.||.+|...+ .+
T Consensus 176 h~a~gy~------L~~qFlsp~-~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~~~~~ 248 (690)
T 3k30_A 176 YGAHGYS------GVHHFLSKR-YNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEEIDGGITREDIEG 248 (690)
T ss_dssp EECTTCS------HHHHHHCTT-TCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHHHHHH
T ss_pred cccccch------HHHHhCCCc-cCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHHHHHH
Confidence 9876420 122333331 0000 0111 1 12345 68899999998 57899998532 33
Q ss_pred HHHHHHHcCCCEEEEecCCC----C-CCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEch
Q 018919 217 DARIAVQAGAAGIIVSNHGA----R-QLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGR 289 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg----~-~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~ 289 (349)
.++.+.+ |+|.+.++..+. . .....+ ..++.+.++++.+ ++|||+.|||++++++.++|+.| ||+|++||
T Consensus 249 ~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR 325 (690)
T 3k30_A 249 VLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLT--TKPVVGVGRFTSPDAMVRQIKAGILDLIGAAR 325 (690)
T ss_dssp HHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGC--SSCEEECSCCCCHHHHHHHHHTTSCSEEEESH
T ss_pred HHHHHHh-hcCEEEEecccccccCCCCccCCccccHHHHHHHHHHc--CCeEEEeCCCCCHHHHHHHHHCCCcceEEEcH
Confidence 3555555 899999974210 0 011111 1245555666665 79999999999999999999987 99999999
Q ss_pred HHHH
Q 018919 290 PVVY 293 (349)
Q Consensus 290 ~~l~ 293 (349)
+++.
T Consensus 326 ~~~~ 329 (690)
T 3k30_A 326 PSIA 329 (690)
T ss_dssp HHHH
T ss_pred HhHh
Confidence 9874
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=99.33 E-value=9e-11 Score=112.65 Aligned_cols=136 Identities=15% Similarity=0.110 Sum_probs=95.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc--ccCC-C-CCCch-HHHHHHHHHhcCC-cEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQG-L-DLGKM-DEDVKWLQTITKL-PILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~-~~~~~-~~~i~~i~~~~~~-pv~vK~v 212 (349)
.+.+++++++|+|+|+||..+ |+ +-++|..|. ...+ ...| + ....+ .+.++.+|+.++- ||.+|+.
T Consensus 164 ~~AA~~A~~aGfDgVEih~a~---GY----Ll~QFLsp~-~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls 235 (361)
T 3gka_A 164 RRGAENARAAGFDGVEVHGAN---GY----LLDQFLQDS-ANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLA 235 (361)
T ss_dssp HHHHHHHHHTTCSEEEEECCT---TS----HHHHHHSTT-TCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECCcC---cc----HHHhccCcc-cccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecc
Confidence 356677788999999999876 11 112222221 0000 0111 1 12345 7889999999843 9999987
Q ss_pred cC-----------H----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 018919 213 LT-----------A----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 277 (349)
Q Consensus 213 ~~-----------~----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka 277 (349)
.. . +.++.+.++|+|+|.+++.. .++ +.+.++++.+ ++|||+.||| +++++.++
T Consensus 236 ~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-----~~~---~~~~~ik~~~--~iPvi~~Ggi-t~e~a~~~ 304 (361)
T 3gka_A 236 PRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESF-----GGD---AIGQQLKAAF--GGPFIVNENF-TLDSAQAA 304 (361)
T ss_dssp TTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC-----STT---CCHHHHHHHH--CSCEEEESSC-CHHHHHHH
T ss_pred cccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCC-----CCH---HHHHHHHHHc--CCCEEEeCCC-CHHHHHHH
Confidence 42 2 34788889999999997532 122 3456677777 6899999999 99999999
Q ss_pred HHhC-CCEEEEchHHHH
Q 018919 278 LALG-ASGIFIGRPVVY 293 (349)
Q Consensus 278 l~~G-A~~V~ig~~~l~ 293 (349)
|+.| ||+|++||+++.
T Consensus 305 l~~G~aD~V~iGR~~la 321 (361)
T 3gka_A 305 LDAGQADAVAWGKLFIA 321 (361)
T ss_dssp HHTTSCSEEEESHHHHH
T ss_pred HHcCCccEEEECHHhHh
Confidence 9987 999999999985
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.6e-11 Score=112.49 Aligned_cols=136 Identities=18% Similarity=0.128 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc--ccCC-CC-CCch-HHHHHHHHHhcCC-cEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQG-LD-LGKM-DEDVKWLQTITKL-PILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~~-~~~~-~~~i~~i~~~~~~-pv~vK~v 212 (349)
.+.+++++++|+|+|+||..|- + +-++|..|. ...+ ...| +. ...+ .+.++.+|+.++- ||.+|+.
T Consensus 156 ~~AA~~a~~aGfDgVEih~a~G---Y----Ll~QFLSp~-~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls 227 (362)
T 4ab4_A 156 RSGAENAKAAGFDGVEIHGANG---Y----LLDQFLQSS-TNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLA 227 (362)
T ss_dssp HHHHHHHHHTTCSEEEEECCTT---S----HHHHHHSTT-TCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECCcCc---c----HHHhhcCCc-cccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 3556777889999999999761 1 112222221 0000 0111 11 1235 6789999999843 9999986
Q ss_pred cC-----------H----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 018919 213 LT-----------A----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 277 (349)
Q Consensus 213 ~~-----------~----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka 277 (349)
.. . +.++.+.++|+|+|.+++.. .++ +.+.++++.+ ++|||+.||| +++++.++
T Consensus 228 ~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-----~~~---~~~~~ik~~~--~iPvi~~Ggi-t~e~a~~~ 296 (362)
T 4ab4_A 228 PRADAHDMGDADRAETFTYVARELGKRGIAFICSRERE-----ADD---SIGPLIKEAF--GGPYIVNERF-DKASANAA 296 (362)
T ss_dssp TTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC-----CTT---CCHHHHHHHH--CSCEEEESSC-CHHHHHHH
T ss_pred ccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC-----CCH---HHHHHHHHHC--CCCEEEeCCC-CHHHHHHH
Confidence 42 2 33778889999999997532 122 2456677777 7899999999 99999999
Q ss_pred HHhC-CCEEEEchHHHH
Q 018919 278 LALG-ASGIFIGRPVVY 293 (349)
Q Consensus 278 l~~G-A~~V~ig~~~l~ 293 (349)
|+.| ||+|++||+++.
T Consensus 297 l~~g~aD~V~iGR~~la 313 (362)
T 4ab4_A 297 LASGKADAVAFGVPFIA 313 (362)
T ss_dssp HHTTSCSEEEESHHHHH
T ss_pred HHcCCccEEEECHHhHh
Confidence 9987 999999999985
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=99.32 E-value=6e-10 Score=102.61 Aligned_cols=198 Identities=15% Similarity=0.107 Sum_probs=118.1
Q ss_pred ceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEE-ecC-CC---CCCHHHHHhhCC---CceEEEEeecC
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSS-WS---TSSVEEVASTGP---GIRFFQLYVYK 133 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~-~~---~~~~e~i~~~~~---~~~~~Ql~~~~ 133 (349)
.++|.|++|++|++++.-++ |+.+ .+.++..+.|+..+ ++- .+ ..+++++.+..+ .+.+.+.....
T Consensus 3 ~~~i~~~~~~~~~~~~t~g~-----p~~~-~~~~~l~~~Gad~ielg~pr~~~~g~~~~~~~~~l~~~~~~~~pn~~~~~ 76 (264)
T 1xm3_A 3 MLTIGGKSFQSRLLLGTGKY-----PSFD-IQKEAVAVSESDILTFAVRRMNIFEASQPNFLEQLDLSKYTLLPNTAGAS 76 (264)
T ss_dssp CEEETTEEESCCEEEECSCS-----SCHH-HHHHHHHHHTCSEEEEETTSSTTC-------CTTCCGGGSEEEEECTTCS
T ss_pred CeEECCEEecCCCEEEecCC-----CCHH-HHHHHHHHcCCeEEEEcccccccCCCCHHHHHHHHHhcCCeEcCCccccC
Confidence 47899999999999998543 3333 33467777787655 231 11 122344433322 12223333224
Q ss_pred ChhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK 210 (349)
+.+.....++.+.++ |.+.+.+++ ... .|. . -++..+.++..++.+ ++.++.-
T Consensus 77 ~~~~~~~f~~~a~~agg~~~i~l~i--~~d------------~~~--~--------~~e~~~~~~~a~~~~~~g~~vi~~ 132 (264)
T 1xm3_A 77 TAEEAVRIARLAKASGLCDMIKVEV--IGC------------SRS--L--------LPDPVETLKASEQLLEEGFIVLPY 132 (264)
T ss_dssp SHHHHHHHHHHHHHTTCCSSEEECC--BCC------------TTT--C--------CBCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCeEEEee--cCC------------Ccc--c--------ccchHHHHHHHHHHHCCCeEEEEE
Confidence 445444566777776 455554433 100 010 0 011124456665543 5666543
Q ss_pred EecCHHHHHHHHHcCCCEEEEecC-CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 211 GVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 211 ~v~~~~~a~~a~~~G~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
...+.+.++++.+.|+|+|...+. -|.. .+....+.+..+++.. ++||++.|||++++|+.+++++|||+|.||+
T Consensus 133 ~~~~~~~a~~~~~~gad~v~~~~~~~Gt~--~~~~~~~~l~~i~~~~--~iPviv~gGI~t~eda~~~~~~GAdgViVGS 208 (264)
T 1xm3_A 133 TSDDVVLARKLEELGVHAIMPGASPIGSG--QGILNPLNLSFIIEQA--KVPVIVDAGIGSPKDAAYAMELGADGVLLNT 208 (264)
T ss_dssp ECSCHHHHHHHHHHTCSCBEECSSSTTCC--CCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred cCCCHHHHHHHHHhCCCEEEECCcccCCC--CCCCCHHHHHHHHhcC--CCCEEEEeCCCCHHHHHHHHHcCCCEEEEcH
Confidence 456789999999999999943221 1111 1222356777777754 7999999999999999999999999999999
Q ss_pred HHHH
Q 018919 290 PVVY 293 (349)
Q Consensus 290 ~~l~ 293 (349)
+++.
T Consensus 209 Ai~~ 212 (264)
T 1xm3_A 209 AVSG 212 (264)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9874
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-10 Score=104.45 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=110.0
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc-----cCCCCCCch-HHHHHHHHHh-cCC
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN-----FQGLDLGKM-DEDVKWLQTI-TKL 205 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~-----~~~~~~~~~-~~~i~~i~~~-~~~ 205 (349)
.+.+.+.+.++.+++.|+|.|++.+....+- -+|..+.. ...-.+.+. ++.++++|+. .++
T Consensus 31 P~~~~~~~~~~~l~~~GaD~iElGiPfSDP~------------aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~ 98 (271)
T 3nav_A 31 PNPEQSLAIMQTLIDAGADALELGMPFSDPL------------ADGPTIQGANLRALAAKTTPDICFELIAQIRARNPET 98 (271)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEECCCCCGG------------GCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCC------------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 3567889999999999999999877431110 01111100 000012223 6889999988 689
Q ss_pred cEEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCCC--------------------------
Q 018919 206 PILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR-------------------------- 237 (349)
Q Consensus 206 pv~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg~-------------------------- 237 (349)
|+++.+..++ +.++.|.++|+|++++.. ||-.
T Consensus 99 Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY 178 (271)
T 3nav_A 99 PIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTY 178 (271)
T ss_dssp CEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEE
T ss_pred CEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEE
Confidence 9998775432 458999999999988851 1100
Q ss_pred --CCC--Cch------hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhc--CHHHHHH
Q 018919 238 --QLD--YVP------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE--GEKGVRR 305 (349)
Q Consensus 238 --~~~--~~~------~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~--G~~gv~~ 305 (349)
... +|. ...+.+.++++.. ++||++.+||++++++.+++..|||+|.||++++..+... ..+...+
T Consensus 179 ~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv~~i~~~~~~~~~~~~ 256 (271)
T 3nav_A 179 LLSRAGVTGAETKANMPVHALLERLQQFD--APPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIETHLDNPAKQLT 256 (271)
T ss_dssp ECCCC--------CCHHHHHHHHHHHHTT--CCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHTTTCHHHHHH
T ss_pred EEeccCCCCcccCCchhHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhhccchHHHHH
Confidence 000 111 1235566666655 7999999999999999889999999999999999876532 2222223
Q ss_pred HHHHHHHHHHH
Q 018919 306 VLEMLREEFEL 316 (349)
Q Consensus 306 ~l~~l~~el~~ 316 (349)
.+..+.++|+.
T Consensus 257 ~~~~~~~~l~~ 267 (271)
T 3nav_A 257 ELANFTQAMKK 267 (271)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555553
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-10 Score=105.64 Aligned_cols=169 Identities=16% Similarity=0.150 Sum_probs=108.8
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc-----CCCCCCch-HHHHHHHHHh-cCCc
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF-----QGLDLGKM-DEDVKWLQTI-TKLP 206 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~-----~~~~~~~~-~~~i~~i~~~-~~~p 206 (349)
+.+.+.+.++.++++|+|.|++.+....+ +-+|...... ..-.+.+. ++.++++|+. .++|
T Consensus 30 ~~~~~~~~~~~l~~~GaD~iElgiPfSDP------------~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~P 97 (267)
T 3vnd_A 30 SPELSLKIIQTLVDNGADALELGFPFSDP------------LADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMP 97 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCC------------TTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCC------------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 44788999999999999999987643111 0011111000 00012223 6889999988 7999
Q ss_pred EEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCC---------CC-----------------
Q 018919 207 ILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ----------------- 238 (349)
Q Consensus 207 v~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg---------~~----------------- 238 (349)
+++.+..++ ..++.+.++|+|++++.. +|- +.
T Consensus 98 ivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY~ 177 (267)
T 3vnd_A 98 IGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYL 177 (267)
T ss_dssp EEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEE
T ss_pred EEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 988766443 458999999999998851 110 00
Q ss_pred --CC--Cc-h-----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhc--CHHHHHHH
Q 018919 239 --LD--YV-P-----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE--GEKGVRRV 306 (349)
Q Consensus 239 --~~--~~-~-----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~--G~~gv~~~ 306 (349)
.. .| . ...+.+.++++.. ++||++.|||++++++.+++..|||+|.+|++++..+... ..+...+.
T Consensus 178 vS~~GvTG~~~~~~~~~~~~v~~vr~~~--~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv~~i~~~~~~~~~~~~~ 255 (267)
T 3vnd_A 178 LSRAGVTGTESKAGEPIENILTQLAEFN--APPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVKIIEAHQHDEATLLAK 255 (267)
T ss_dssp SCCCCCC--------CHHHHHHHHHTTT--CCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHTSSCHHHHHHH
T ss_pred EecCCCCCCccCCcHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHHHHHHhccChHHHHHH
Confidence 00 11 1 1235566665554 7999999999999999889999999999999998876532 12222334
Q ss_pred HHHHHHHHHH
Q 018919 307 LEMLREEFEL 316 (349)
Q Consensus 307 l~~l~~el~~ 316 (349)
+..+.++|+.
T Consensus 256 ~~~~~~~l~~ 265 (267)
T 3vnd_A 256 LAEFTTAMKA 265 (267)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4555555553
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.2e-11 Score=105.87 Aligned_cols=124 Identities=21% Similarity=0.237 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v----- 212 (349)
...++++.+.|++.+.+.++... ++. .+.+. .+.++.+++..+ |+++|.+
T Consensus 73 ~~~~~~A~~~Gad~Id~viN~g~-------~~~----------------~~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~ 128 (225)
T 1mzh_A 73 VKEAVEAVRDGAQELDIVWNLSA-------FKS----------------EKYDFVVEELKEIFRETP-SAVHKVIVETPY 128 (225)
T ss_dssp HHHHHHHHHTTCSEEEEECCHHH-------HHT----------------TCHHHHHHHHHHHHHTCT-TSEEEEECCGGG
T ss_pred HHHHHHHHHcCCCEEEEEecHHH-------Hhc----------------CChHHHHHHHHHHHHHhc-CceEEEEEeCCC
Confidence 35567888899999986554311 010 02223 567999999888 9999994
Q ss_pred cCH----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 ~~~----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+. +.++.+.++|+|+|.+ ++|. ..+..+++.+..+++.+++++||+++|||++++|+.+++++||+.|+++
T Consensus 129 l~~~~~~~~a~~a~eaGad~I~t-stg~---~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s 204 (225)
T 1mzh_A 129 LNEEEIKKAVEICIEAGADFIKT-STGF---APRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTS 204 (225)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEC-CCSC---SSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCHHHHHHHHHHHHHhCCCEEEE-CCCC---CCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHHHHc
Confidence 243 3478889999999954 3432 2234578888888888866899999999999999999999999988877
Q ss_pred hH
Q 018919 289 RP 290 (349)
Q Consensus 289 ~~ 290 (349)
+.
T Consensus 205 ~~ 206 (225)
T 1mzh_A 205 SG 206 (225)
T ss_dssp CH
T ss_pred cH
Confidence 64
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.23 E-value=7.3e-10 Score=99.87 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=114.9
Q ss_pred cCCh--hhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecC--Ch----hHHHHHHHHHHHcCCCEEEEe
Q 018919 85 AHPE--GEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYK--DR----NVVAQLVRRAERAGFKAIALT 156 (349)
Q Consensus 85 ~~~~--~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~--~~----~~~~~~~~~~~~~G~~~i~i~ 156 (349)
.+++ .-..+++++.+.|+..+.- .+...++.+++....+ ++.+.... +. +...+.++.+.++|++.+.++
T Consensus 31 ~~~~~~~~~~~a~~~~~~G~~~i~~-~~~~~i~~i~~~~~~p-~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~ 108 (234)
T 1yxy_A 31 YSETGGIMPLMAKAAQEAGAVGIRA-NSVRDIKEIQAITDLP-IIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMD 108 (234)
T ss_dssp CCTTCCSHHHHHHHHHHHTCSEEEE-ESHHHHHHHHTTCCSC-EEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEE
T ss_pred cCCccchHHHHHHHHHHCCCcEeec-CCHHHHHHHHHhCCCC-EEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEc
Confidence 3444 3468999999999886531 1222234444433323 22221100 00 113456788889999998876
Q ss_pred cCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEE--EEec
Q 018919 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGI--IVSN 233 (349)
Q Consensus 157 ~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I--~v~~ 233 (349)
...-. -|. +....+.++.+++.+ +.++++ .+.++++++.+.++|+|.| .+.+
T Consensus 109 ~~~~~-------------~~~-----------~~~~~~~i~~i~~~~~~~~v~~-~~~t~~ea~~a~~~Gad~i~~~v~g 163 (234)
T 1yxy_A 109 CTKRD-------------RHD-----------GLDIASFIRQVKEKYPNQLLMA-DISTFDEGLVAHQAGIDFVGTTLSG 163 (234)
T ss_dssp CCSSC-------------CTT-----------CCCHHHHHHHHHHHCTTCEEEE-ECSSHHHHHHHHHTTCSEEECTTTT
T ss_pred ccccC-------------CCC-----------CccHHHHHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEeeeccc
Confidence 54210 010 011256789998877 666665 5678999999999999999 4543
Q ss_pred CC-CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 234 HG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 234 ~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.. +.+ ....+.++.+.++++. ++||+++|||++.+|+.+++++|||+|++||+++
T Consensus 164 ~~~~~~-~~~~~~~~~i~~~~~~---~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~ 219 (234)
T 1yxy_A 164 YTPYSR-QEAGPDVALIEALCKA---GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT 219 (234)
T ss_dssp SSTTSC-CSSSCCHHHHHHHHHT---TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH
T ss_pred cCCCCc-CCCCCCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHh
Confidence 21 211 1123457777777664 6999999999999999999999999999999876
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-10 Score=132.06 Aligned_cols=206 Identities=13% Similarity=0.185 Sum_probs=133.4
Q ss_pred ccccccCCCCC---CCcc-eeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH----h
Q 018919 48 FRPRILIDVSK---IDMN-TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA----S 119 (349)
Q Consensus 48 l~p~~l~~~~~---~d~s-~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~----~ 119 (349)
|.|+..+..+. .+|. |+++|+ .||+.+||+... .+..|+.|++++|..+.+...+..+.++++ +
T Consensus 565 f~PrLv~~~~g~~~~~t~~t~llg~---~PIi~~gM~~~~-----~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~ 636 (2051)
T 2uv8_G 565 YHPKLIKNKSGKIFVETKFSKLIGR---PPLLVPGMTPCT-----VSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDS 636 (2051)
T ss_dssp TCCEEEECSSCCEEEECHHHHHHSS---CSEEECCCHHHH-----TCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHH
T ss_pred cCCccccCCCCchhHHHHHHHhhCc---cceecCCCcccc-----ccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHH
Confidence 56766542221 2333 556783 699999997321 145899999999999999544434454432 2
Q ss_pred h----C-CCceEEEEeecCChh---HHHHHHHHHHHcCCCE--EEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCC
Q 018919 120 T----G-PGIRFFQLYVYKDRN---VVAQLVRRAERAGFKA--IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL 189 (349)
Q Consensus 120 ~----~-~~~~~~Ql~~~~~~~---~~~~~~~~~~~~G~~~--i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~ 189 (349)
. . +.++.+++... ++. .-.++++.+.+.|++. +.+..+.|
T Consensus 637 ~~~~t~~~~~~gvN~~~~-~~~~~~~~~~~~~~~~~~gv~i~~v~~~ag~p----------------------------- 686 (2051)
T 2uv8_G 637 VVSQIEKGSTFGINLIYV-NPFMLQWGIPLIKELRSKGYPIQFLTIGAGVP----------------------------- 686 (2051)
T ss_dssp HHHHSCTTCCEEEEEETT-CTTHHHHHHHHHHHHHHTTCSEEEEEEESSCC-----------------------------
T ss_pred HHHhcCCCCceEEEEeec-ChhhhhhhHHHHHHHHHcCCCcceEEecCCCC-----------------------------
Confidence 1 1 25677776432 332 1237788888999998 44433222
Q ss_pred CchHHHHHHHHHhcCCcEEEEEecC---HHHHHHHHHcCCCEE-E--EecC--CCCC--CCCchhhHHHHHHHHHHhcCC
Q 018919 190 GKMDEDVKWLQTITKLPILVKGVLT---AEDARIAVQAGAAGI-I--VSNH--GARQ--LDYVPATIMALEEVVKATQGR 259 (349)
Q Consensus 190 ~~~~~~i~~i~~~~~~pv~vK~v~~---~~~a~~a~~~G~d~I-~--v~~~--gg~~--~~~~~~~~~~l~~i~~~~~~~ 259 (349)
..-..++.+. .++++++.....+ ...++.+.++|+|++ + +.|. ||+. .+.....+..++++++.+ +
T Consensus 687 -~~~~~~~~i~-~lG~~vi~~~~~~~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~~--~ 762 (2051)
T 2uv8_G 687 -SLEVASEYIE-TLGLKYLGLKPGSIDAISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHP--N 762 (2051)
T ss_dssp -CHHHHHHHHH-HSCCSCEEECCCSHHHHHHHHHHHHHSTTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTCT--T
T ss_pred -chhhHHHHHH-HcCCEEEEecCchHHHHHHHHHHHHhCCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhcC--C
Confidence 1112233333 3488887644433 345677888999993 3 3332 4431 123355667788888877 8
Q ss_pred CcEEEecCCCCHHHHHHHH-----------HhCCCEEEEchHHHHHH
Q 018919 260 IPVFLDGGVRRGTDVFKAL-----------ALGASGIFIGRPVVYSL 295 (349)
Q Consensus 260 ipvia~GGI~~~~dv~kal-----------~~GA~~V~ig~~~l~~~ 295 (349)
+|||+.|||.++.+++.+| ++|||+|+|||.|+.+.
T Consensus 763 ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~ 809 (2051)
T 2uv8_G 763 IMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAK 809 (2051)
T ss_dssp BCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTST
T ss_pred ceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhCc
Confidence 9999999999999999999 89999999999998643
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-09 Score=98.84 Aligned_cols=173 Identities=20% Similarity=0.187 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL 213 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~ 213 (349)
.+.+.+.++.+++.|++.|++.+....+-..-..++... .+....-.+.+. .+.++++|+.+++|+++....
T Consensus 31 ~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~-------~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~~ 103 (262)
T 1rd5_A 31 LATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASV-------ARALASGTTMDAVLEMLREVTPELSCPVVLLSYY 103 (262)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHH-------HHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCS
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHH-------HHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 367788899999999999998764321000000000000 000000012333 677999998889998875433
Q ss_pred CHH---HHHHHHHcCCCEEEEecCC---------------C---------CC-------------------CC--Cc---
Q 018919 214 TAE---DARIAVQAGAAGIIVSNHG---------------A---------RQ-------------------LD--YV--- 242 (349)
Q Consensus 214 ~~~---~a~~a~~~G~d~I~v~~~g---------------g---------~~-------------------~~--~~--- 242 (349)
++. ..+.+.++|+|+|++.... - +. .. +|
T Consensus 104 ~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~~~s~~G~tG~~~ 183 (262)
T 1rd5_A 104 KPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRA 183 (262)
T ss_dssp HHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBCTTS
T ss_pred cHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHhcCCCeEEEecCCCCCCCCc
Confidence 332 1344889999998875311 0 00 00 11
Q ss_pred ---hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh-cCHHHHHHHHHHHHHHHHH
Q 018919 243 ---PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA-EGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~-~G~~gv~~~l~~l~~el~~ 316 (349)
+...+.+.++++.. ++||++.|||++++++.+++++|||+|.+||+++..... .......+.+..+.++|+.
T Consensus 184 ~~~~~~~~~i~~v~~~~--~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (262)
T 1rd5_A 184 NVNPRVESLIQEVKKVT--NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKN 259 (262)
T ss_dssp CBCTHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhhc--CCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhHHHhccChhHHHHHHHHHHHHHHH
Confidence 12345677777765 799999999999999999999999999999999876532 2222223345556666554
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-09 Score=99.01 Aligned_cols=168 Identities=15% Similarity=0.121 Sum_probs=107.7
Q ss_pred cCCh--hHHHHHHHHHHHcCCCEEEEecCCCC---CCchh-----HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHH
Q 018919 132 YKDR--NVVAQLVRRAERAGFKAIALTVDTPR---LGRRE-----ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQ 200 (349)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~G~~~i~i~~d~p~---~g~r~-----~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~ 200 (349)
..++ +.+.+.++.+++.|+|+|++.+.... .|.-. +-+.++ ..... .+.++++|
T Consensus 25 ~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G---------------~~~~~~~~~v~~ir 89 (268)
T 1qop_A 25 LGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAG---------------VTPAQCFEMLAIIR 89 (268)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTT---------------CCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcC---------------CCHHHHHHHHHHHH
Confidence 3444 77888999999999999998663210 01000 000100 11122 57799999
Q ss_pred Hh-cCCcEEEEEecC-------HHHHHHHHHcCCCEEEEec---------------CCC---------CC----------
Q 018919 201 TI-TKLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGA---------RQ---------- 238 (349)
Q Consensus 201 ~~-~~~pv~vK~v~~-------~~~a~~a~~~G~d~I~v~~---------------~gg---------~~---------- 238 (349)
+. .++|+++-...+ .+.++.+.++|+|++++.. ||- +.
T Consensus 90 ~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~ 169 (268)
T 1qop_A 90 EKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASY 169 (268)
T ss_dssp HHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHH
T ss_pred hcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhh
Confidence 98 799987633223 3678889999999998852 110 00
Q ss_pred ---------C--CCc------hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhc--C
Q 018919 239 ---------L--DYV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE--G 299 (349)
Q Consensus 239 ---------~--~~~------~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~--G 299 (349)
. .+| +...+.+.++++.. ++||+++|||++++++.+++..|||+|.+||+++...... .
T Consensus 170 ~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~--~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~~~~~~~~ 247 (268)
T 1qop_A 170 GRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNLAS 247 (268)
T ss_dssp CCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHTTTC
T ss_pred CCCcEEEEecCCcCCCccCCCchHHHHHHHHHhcc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhhHhhcccC
Confidence 0 011 11256777777665 7999999999999999999999999999999998765321 2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018919 300 EKGVRRVLEMLREEFEL 316 (349)
Q Consensus 300 ~~gv~~~l~~l~~el~~ 316 (349)
.+...+.+..+.++++.
T Consensus 248 ~~~~~~~~~~~~~~l~~ 264 (268)
T 1qop_A 248 PKQMLAELRSFVSAMKA 264 (268)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 12212334555555543
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=9.1e-09 Score=92.95 Aligned_cols=197 Identities=15% Similarity=0.185 Sum_probs=120.7
Q ss_pred ceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCC------HHHHHhhCCCceEEEEee----
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS------VEEVASTGPGIRFFQLYV---- 131 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~------~e~i~~~~~~~~~~Ql~~---- 131 (349)
..+|.|++|.+.+++..=-+ .+ ...+.++....|+-.+.-...... .+.+.+..+.. -+.+.+
T Consensus 10 ~l~i~~~~f~SRl~~Gtgky---~~---~~~~~~a~~asg~e~vtva~rR~~~~~~~~~~~~~~~i~~~-~~~~lpNTag 82 (265)
T 1wv2_A 10 PFVIAGRTYGSRLLVGTGKY---KD---LDETRRAIEASGAEIVTVAVRRTNIGQNPDEPNLLDVIPPD-RYTILPNTAG 82 (265)
T ss_dssp CEEETTEEESCCEEECCSCS---SS---HHHHHHHHHHSCCSEEEEEGGGCCC-------------CTT-TSEEEEECTT
T ss_pred CeEECCEEeecceEEecCCC---CC---HHHHHHHHHHhCCCeEEEEEEeeccccCCCcchHHhhhhhc-CCEECCcCCC
Confidence 48899999999999876222 11 235777778888876542221111 12333322210 112222
Q ss_pred cCChhHHHHHHHHHHH-c-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHh--cCCcE
Q 018919 132 YKDRNVVAQLVRRAER-A-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTI--TKLPI 207 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~-~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~--~~~pv 207 (349)
..+.+.-...++.+++ + |-++|-+-+-.-. .+. -|+..+.++..+.. -+..+
T Consensus 83 ~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~----------~~l--------------lpD~~~tv~aa~~L~~~Gf~V 138 (265)
T 1wv2_A 83 CYDAVEAVRTCRLARELLDGHNLVKLEVLADQ----------KTL--------------FPNVVETLKAAEQLVKDGFDV 138 (265)
T ss_dssp CCSHHHHHHHHHHHHTTTTSCCEEEECCBSCT----------TTC--------------CBCHHHHHHHHHHHHTTTCEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCeEEEEeecCc----------ccc--------------CcCHHHHHHHHHHHHHCCCEE
Confidence 2344444555566666 4 6777765442110 011 12223334333332 26666
Q ss_pred EEEEecCHHHHHHHHHcCCCEEEEecC-CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 208 LVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 208 ~vK~v~~~~~a~~a~~~G~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
+.-...++..++++.++|+++|..-+. -|+ ..|..+++.|..+++.. ++|||++|||.+++|+.+++++|||+|+
T Consensus 139 lpy~~dd~~~akrl~~~G~~aVmPlg~pIGs--G~Gi~~~~lI~~I~e~~--~vPVI~eGGI~TPsDAa~AmeLGAdgVl 214 (265)
T 1wv2_A 139 MVYTSDDPIIARQLAEIGCIAVMPLAGLIGS--GLGICNPYNLRIILEEA--KVPVLVDAGVGTASDAAIAMELGCEAVL 214 (265)
T ss_dssp EEEECSCHHHHHHHHHSCCSEEEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred EEEeCCCHHHHHHHHHhCCCEEEeCCccCCC--CCCcCCHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 644568999999999999999976332 111 12445678888888865 8999999999999999999999999999
Q ss_pred EchHHHH
Q 018919 287 IGRPVVY 293 (349)
Q Consensus 287 ig~~~l~ 293 (349)
+|+++..
T Consensus 215 VgSAI~~ 221 (265)
T 1wv2_A 215 MNTAIAH 221 (265)
T ss_dssp ESHHHHT
T ss_pred EChHHhC
Confidence 9999874
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-09 Score=95.01 Aligned_cols=129 Identities=21% Similarity=0.166 Sum_probs=90.0
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEE
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~v 209 (349)
..+.+...+.++.+.+.|++.+++++.+|.. .+.++.+|+.+ +.+|.+
T Consensus 18 ~~~~~~~~~~~~~~~~~G~~~iev~~~~~~~------------------------------~~~i~~ir~~~~~~~~ig~ 67 (205)
T 1wa3_A 18 ANSVEEAKEKALAVFEGGVHLIEITFTVPDA------------------------------DTVIKELSFLKEKGAIIGA 67 (205)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEETTSTTH------------------------------HHHHHHTHHHHHTTCEEEE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCChhH------------------------------HHHHHHHHHHCCCCcEEEe
Confidence 3577788888999999999999998875420 24477777765 344544
Q ss_pred EEecCHHHHHHHHHcCCCEEEEecCCC-------------------CC---------------CCC-chhhHHHHHHHHH
Q 018919 210 KGVLTAEDARIAVQAGAAGIIVSNHGA-------------------RQ---------------LDY-VPATIMALEEVVK 254 (349)
Q Consensus 210 K~v~~~~~a~~a~~~G~d~I~v~~~gg-------------------~~---------------~~~-~~~~~~~l~~i~~ 254 (349)
..+.++++++.+.++|+|+| ++.... +. ... .....+.+.++++
T Consensus 68 ~~v~~~~~~~~a~~~Gad~i-v~~~~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~~~l~~ 146 (205)
T 1wa3_A 68 GTVTSVEQCRKAVESGAEFI-VSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKG 146 (205)
T ss_dssp ESCCSHHHHHHHHHHTCSEE-ECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHcCCCEE-EcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHH
Confidence 44568888888888888888 542211 00 000 0112344555554
Q ss_pred HhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 255 ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 255 ~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.++ ++||+++|||. .+++.+++.+||++|.+||.++.
T Consensus 147 ~~~-~~pvia~GGI~-~~~~~~~~~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 147 PFP-NVKFVPTGGVN-LDNVCEWFKAGVLAVGVGSALVK 183 (205)
T ss_dssp TCT-TCEEEEBSSCC-TTTHHHHHHHTCSCEEECHHHHC
T ss_pred hCC-CCcEEEcCCCC-HHHHHHHHHCCCCEEEECccccC
Confidence 443 79999999996 78999999999999999999874
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4e-10 Score=105.10 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=79.6
Q ss_pred cCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCC-----------------------CC-------chhhHHHHHHH
Q 018919 203 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-----------------------DY-------VPATIMALEEV 252 (349)
Q Consensus 203 ~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~-----------------------~~-------~~~~~~~l~~i 252 (349)
.+.++++ .+.+.++++++.++|+|.|.+.|.+|+.. +. ...+++.++++
T Consensus 124 ~g~~vvv-~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i 202 (297)
T 4adt_A 124 FKTPFVC-GCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLT 202 (297)
T ss_dssp CSSCEEE-EESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHH
T ss_pred CCCeEEE-EeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHH
Confidence 4788887 68899999999999999999987655321 01 13457788888
Q ss_pred HHHhcCCCcEE--EecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 018919 253 VKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 318 (349)
Q Consensus 253 ~~~~~~~ipvi--a~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m 318 (349)
.+.+ ++||+ +.|||++++|+.+++++|||+|++|++++.+ +.....++.+.+.++.++
T Consensus 203 ~~~~--~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a------~dp~~~~~~l~~ai~~~~ 262 (297)
T 4adt_A 203 RKLK--RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFES------ENPQKMASSIVMAVSNFN 262 (297)
T ss_dssp HHHT--SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTS------SCHHHHHHHHHHHHHTTT
T ss_pred HHhc--CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcC------CCHHHHHHHHHHHHHhhC
Confidence 8776 56776 9999999999999999999999999999852 122234455555554433
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4.6e-09 Score=95.38 Aligned_cols=163 Identities=21% Similarity=0.214 Sum_probs=107.3
Q ss_pred CCh--hHHHHHHHHHHHcCCCEEEEecC--CCCC-Cchh-----HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHH
Q 018919 133 KDR--NVVAQLVRRAERAGFKAIALTVD--TPRL-GRRE-----ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQT 201 (349)
Q Consensus 133 ~~~--~~~~~~~~~~~~~G~~~i~i~~d--~p~~-g~r~-----~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~ 201 (349)
.|+ +.+.+.++.+++. ++.|++++. .|.. |... +-++++ .+... .+.++++|+
T Consensus 14 ~~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g---------------~~~~~~~~~i~~i~~ 77 (248)
T 1geq_A 14 GDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNG---------------FKLREAFWIVKEFRR 77 (248)
T ss_dssp TSSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTT---------------CCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCC---------------CCHHHHHHHHHHHHh
Confidence 455 5778889999888 999987732 1110 1000 000010 12233 678999999
Q ss_pred hcCCcEEEEEecC-------HHHHHHHHHcCCCEEEEecC---------------CC---------CC----------CC
Q 018919 202 ITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSNH---------------GA---------RQ----------LD 240 (349)
Q Consensus 202 ~~~~pv~vK~v~~-------~~~a~~a~~~G~d~I~v~~~---------------gg---------~~----------~~ 240 (349)
.+++||.+.+..+ .+.++.+.++|+|+|++..- |- +. .+
T Consensus 78 ~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d 157 (248)
T 1geq_A 78 HSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTT 157 (248)
T ss_dssp TCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCS
T ss_pred hCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCC
Confidence 8899999877544 37899999999999998631 10 00 01
Q ss_pred -----------Cc------hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHH
Q 018919 241 -----------YV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 303 (349)
Q Consensus 241 -----------~~------~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv 303 (349)
.| +..++.+.++++.+ ++||+++|||++++++.+++.+|||+|.+|++++.....+. +.+
T Consensus 158 ~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~--~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~~~~~~-~~~ 234 (248)
T 1geq_A 158 GFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKG-REA 234 (248)
T ss_dssp SEEEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHG-GGC
T ss_pred CeEEEEECCccCCCCCCCChhHHHHHHHHHhhc--CCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHhhHhhCh-HHH
Confidence 01 22356777777766 79999999999999999999999999999999987532111 334
Q ss_pred HHHHHHHHHHH
Q 018919 304 RRVLEMLREEF 314 (349)
Q Consensus 304 ~~~l~~l~~el 314 (349)
.++++.+++.+
T Consensus 235 ~~~~~~~~~~~ 245 (248)
T 1geq_A 235 TEFLKKKVEEL 245 (248)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444443
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.2e-10 Score=106.09 Aligned_cols=198 Identities=16% Similarity=0.140 Sum_probs=124.5
Q ss_pred HHHHHHHHHcCCeEEec-C--------C----CCCCHHHHH---hhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEE
Q 018919 91 YATARAASAAGTIMTLS-S--------W----STSSVEEVA---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~-~--------~----~~~~~e~i~---~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~ 154 (349)
..+++++.+.|+..+.- + . ....++.+. +....|...... ..+ .+.++.+.++|++.+.
T Consensus 31 ~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~-~~~----~~~~~~~~~aGad~v~ 105 (297)
T 2zbt_A 31 PEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVR-IGH----FVEAMILEAIGVDFID 105 (297)
T ss_dssp HHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEE-TTC----HHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEec-cCC----HHHHHHHHHCCCCEEe
Confidence 37889999999876621 1 0 112333333 322233333221 122 5678888899999984
Q ss_pred EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHH-hcCCcEEEEEecCHHHHHHHHHcCCCEEEEec
Q 018919 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQT-ITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 155 i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~-~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.+.+ .+ +.++.+++ ..++++++. +.+++++..+.++|+|.|.+.+
T Consensus 106 ~~~~~~--------------~~-----------------~~~~~~~~~~~~i~l~~~-v~~~~~~~~a~~~Gad~I~v~G 153 (297)
T 2zbt_A 106 ESEVLT--------------PA-----------------DEEHHIDKWKFKVPFVCG-ARNLGEALRRIAEGAAMIRTKG 153 (297)
T ss_dssp EETTSC--------------CS-----------------CSSCCCCGGGCSSCEEEE-ESSHHHHHHHHHTTCSEEEECC
T ss_pred eeCCCC--------------hH-----------------HHHHHHHHhCCCceEEee-cCCHHHHHHHHHcCCCEEEEcc
Confidence 332110 01 01111222 137788764 6789999999999999998852
Q ss_pred CCCCC---------------------CCC---------chhhHHHHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHhC
Q 018919 234 HGARQ---------------------LDY---------VPATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALG 281 (349)
Q Consensus 234 ~gg~~---------------------~~~---------~~~~~~~l~~i~~~~~~~ipvi--a~GGI~~~~dv~kal~~G 281 (349)
..+.. ... .+..++.+.++++.. ++|++ ++|||++++|+.+++++|
T Consensus 154 ~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~--~~pvi~~a~GGI~~~e~i~~~~~aG 231 (297)
T 2zbt_A 154 EAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHG--RLPVVNFAAGGIATPADAALMMHLG 231 (297)
T ss_dssp CSSSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHS--SCSSCEEBCSSCCSHHHHHHHHHTT
T ss_pred cccCcchHHHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhc--CCCcEEEeeCCCCCHHHHHHHHHcC
Confidence 10100 000 123456777777765 68888 999999999999999999
Q ss_pred CCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 282 A~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
||+|++||+++.+ . .....++.+++.++.++...++.+++|+.+..
T Consensus 232 adgvvvGsai~~~---~---dp~~~~~~l~~~i~~~~~~~~~~~~~~~~g~~ 277 (297)
T 2zbt_A 232 MDGVFVGSGIFKS---G---DPRKRARAIVRAVAHYNDPEVLAEVSEDLGEP 277 (297)
T ss_dssp CSEEEECGGGGGS---S---CHHHHHHHHHHHHHTTTCHHHHHHHHTTCCCC
T ss_pred CCEEEEchHHhCC---C---CHHHHHHHHHHHHHHHhchHhhhHHHHhcCce
Confidence 9999999998741 1 13456677777777777666677777777655
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-08 Score=94.33 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=111.3
Q ss_pred HHHHHHHHHcCCeEE--ecCCC--CCCHHHHH---hhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 91 YATARAASAAGTIMT--LSSWS--TSSVEEVA---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 91 ~~la~aa~~~G~~~~--~~~~~--~~~~e~i~---~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
..+|+...+.|+..+ ++... .-+++++. +...-|...+=|. .|+. .+..+.++|++++.+....
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi-~d~~----qi~ea~~~GAD~VlLi~a~---- 152 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQACSLPALRKDFL-FDPY----QVYEARSWGADCILIIMAS---- 152 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTSSSCEEEESCC-CSTH----HHHHHHHTTCSEEEEETTT----
T ss_pred HHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhcCCCEEECCcc-CCHH----HHHHHHHcCCCEEEEcccc----
Confidence 379999999997643 22211 12455543 3333333333232 3433 4667788999998865421
Q ss_pred chhHHhhhhcCCCCcCcccccCCCCCCchHHH-HHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCc
Q 018919 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDED-VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYV 242 (349)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~ 242 (349)
.+....+. ++..+ ..++-+++ .+.+.++++++.++|+|.|-+.|...+.+
T Consensus 153 ------------------------L~~~~l~~l~~~a~-~lGl~~lv-evh~~eEl~~A~~~ga~iIGinnr~l~t~--- 203 (272)
T 3tsm_A 153 ------------------------VDDDLAKELEDTAF-ALGMDALI-EVHDEAEMERALKLSSRLLGVNNRNLRSF--- 203 (272)
T ss_dssp ------------------------SCHHHHHHHHHHHH-HTTCEEEE-EECSHHHHHHHTTSCCSEEEEECBCTTTC---
T ss_pred ------------------------cCHHHHHHHHHHHH-HcCCeEEE-EeCCHHHHHHHHhcCCCEEEECCCCCccC---
Confidence 11111223 33333 35777665 46899999999999999998876644322
Q ss_pred hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 243 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 243 ~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
...++...++.+.++.++|+|+.|||++++|+.++..+||++|.||++++.
T Consensus 204 ~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr 254 (272)
T 3tsm_A 204 EVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMR 254 (272)
T ss_dssp CBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHT
T ss_pred CCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcC
Confidence 234556667777776679999999999999999999999999999999986
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.8e-09 Score=98.46 Aligned_cols=165 Identities=18% Similarity=0.176 Sum_probs=107.8
Q ss_pred HHHHHHHHHcCCeEE--ecCC-----CCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 91 YATARAASAAGTIMT--LSSW-----STSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 91 ~~la~aa~~~G~~~~--~~~~-----~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
..+|++..+.|+..+ ++.. +...++++++...-|.... |.-.....++.+.+.|++++.+....
T Consensus 75 ~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v~lPvl~k-----dfiid~~qv~~A~~~GAD~VlLi~a~---- 145 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRK-----DFVVQPYQIHEARAHGADMLLLIVAA---- 145 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHCSSCEEEE-----SCCCSHHHHHHHHHTTCSEEEEEGGG----
T ss_pred HHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhCCCCEEEC-----ccccCHHHHHHHHHcCCCEEEEeccc----
Confidence 378999999997754 1111 1112333444333233222 22122224677788999998774321
Q ss_pred chhHHhhhhcCCCCcCcccccCCCCCCchHHH-HHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCc
Q 018919 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDED-VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYV 242 (349)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~ 242 (349)
.++..... ++..+ .+++.+++ .+.+.++++++.++|+|.|.+.|...+ .-
T Consensus 146 ------------------------l~~~~l~~l~~~a~-~lGl~~lv-ev~t~ee~~~A~~~Gad~IGv~~r~l~---~~ 196 (272)
T 3qja_A 146 ------------------------LEQSVLVSMLDRTE-SLGMTALV-EVHTEQEADRALKAGAKVIGVNARDLM---TL 196 (272)
T ss_dssp ------------------------SCHHHHHHHHHHHH-HTTCEEEE-EESSHHHHHHHHHHTCSEEEEESBCTT---TC
T ss_pred ------------------------CCHHHHHHHHHHHH-HCCCcEEE-EcCCHHHHHHHHHCCCCEEEECCCccc---cc
Confidence 01111222 33333 46888776 568899999999999999999754322 22
Q ss_pred hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 243 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 243 ~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
...++.+.++.+.++.++|+++.|||++++|+.+++.+||++|.||++++.
T Consensus 197 ~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~ 247 (272)
T 3qja_A 197 DVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVT 247 (272)
T ss_dssp CBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHT
T ss_pred ccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhC
Confidence 234455667766665579999999999999999999999999999999985
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.3e-10 Score=132.10 Aligned_cols=210 Identities=17% Similarity=0.206 Sum_probs=134.2
Q ss_pred cccccccCCC-CC--CCcc-eeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH-----
Q 018919 47 LFRPRILIDV-SK--IDMN-TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV----- 117 (349)
Q Consensus 47 ~l~p~~l~~~-~~--~d~s-~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i----- 117 (349)
.|.|+..... .. .++. ++++| ..||+.+||++.. + ...|+.++.++|..+.++..+..+++.+
T Consensus 402 ~f~P~l~~~~~g~~~~~t~~~~~lg---~~PIi~a~M~~~~-s----~~~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~ 473 (3089)
T 3zen_D 402 SYAPTVVKLPDGSVKLETKFTRLTG---RSPILLAGMTPTT-V----DAKIVAAAANAGHWAELAGGGQVTEQIFNDRIA 473 (3089)
T ss_dssp GGCCEEEECTTCCEEEECHHHHHHS---SCSEEECCCHHHH-T----SHHHHHHHHHTTCEEEECSTTCCSHHHHHHHHH
T ss_pred ccCCcccccCCCcccccchhhhhcC---CCCEEeCCCcCCc-C----CHHHHHHHHhCCCceeecCCCCCCHHHHHHHHH
Confidence 4667665422 12 2222 44566 5799999998542 2 3479999999999999965544344433
Q ss_pred --HhhC--CCceEEEEeecCChhH------HHHHHHHHHHcC--CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccC
Q 018919 118 --ASTG--PGIRFFQLYVYKDRNV------VAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (349)
Q Consensus 118 --~~~~--~~~~~~Ql~~~~~~~~------~~~~~~~~~~~G--~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~ 185 (349)
++.. +.++.+++.. .++.. ..+.++.+.+.| ++++.++.+.|.
T Consensus 474 ~~r~~~~~~~p~~vNl~~-~~p~~~~~~~g~~~~~~~~~~~g~~vdgv~~~aG~P~------------------------ 528 (3089)
T 3zen_D 474 ELETLLEPGRAIQFNTLF-LDPYLWKLQVGGKRLVQRARQSGAPIDGLVVSAGIPD------------------------ 528 (3089)
T ss_dssp HHHHHSCTTCCCEEEEEC-SCHHHHHHHHHHHHHHHHHHHTTCSCCEEEEESSCCC------------------------
T ss_pred HHHHhcCCCCceeechhh-cChhhhhhccCHHHHHHHHHHcCCCceEEEEeCCCCc------------------------
Confidence 2223 2345455432 23432 146788888999 667877665541
Q ss_pred CCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCC------EEEEecC--CCCCCCCchhhHHHHHHHHHHh
Q 018919 186 GLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAA------GIIVSNH--GARQLDYVPATIMALEEVVKAT 256 (349)
Q Consensus 186 ~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d------~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~ 256 (349)
.+. .+.++.+++ .++.++.=.+.+.++++++.+.|+| +|++.+. ||+.. .......+.+....+
T Consensus 529 ----~ee~~~~i~~l~~-~Gi~~i~~~~~t~~~a~~~~~i~~d~~~~~y~vv~~G~eaGGH~g--~~~~~~ll~~~~~~i 601 (3089)
T 3zen_D 529 ----LEEAVDIIDELNE-VGISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIEGGRAGGHHS--WEDLDDLLLATYSEL 601 (3089)
T ss_dssp ----HHHHHHHHTSTTH-HHHCSEEECCCSHHHHHHHHHHHTTSTTSCEEEEECCSSSSEECC--SCCHHHHHHHHHHHH
T ss_pred ----hhHhHHHHHHHHH-cCCEEEEEeCCCHHHHHHHHHhhhhcCCCcEEEEEeCCCcCCCCC--cccHHHHHHHHHHHH
Confidence 011 133555554 3555554236788999999999999 7888653 33321 123344453333332
Q ss_pred c--CCCcEEEecCCCCHHHHHHHH-----------HhCCCEEEEchHHHHHHh
Q 018919 257 Q--GRIPVFLDGGVRRGTDVFKAL-----------ALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 257 ~--~~ipvia~GGI~~~~dv~kal-----------~~GA~~V~ig~~~l~~~~ 296 (349)
+ .++||++.|||.+++++..+| ++|||+|++||.|+....
T Consensus 602 r~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t~E 654 (3089)
T 3zen_D 602 RSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMATLE 654 (3089)
T ss_dssp TTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTCTT
T ss_pred hhcCCCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhCcc
Confidence 2 279999999999999999999 999999999999986543
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.4e-10 Score=105.62 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcC
Q 018919 245 TIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 322 (349)
Q Consensus 245 ~~~~l~~i~~~~~~~ipvi--a~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G 322 (349)
.++.+.++++.. ++||+ +.|||++++|+.+++.+||++|++||+++.. +. ....++.+.+.+..++...+
T Consensus 195 ~~~~i~~i~~~~--~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~----~~--p~~~~~~l~~~~~~~~~~~~ 266 (305)
T 2nv1_A 195 PYELLLQIKKDG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS----DN--PAKFAKAIVEATTHFTDYKL 266 (305)
T ss_dssp CHHHHHHHHHHT--SCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGS----SC--HHHHHHHHHHHHHTTTCHHH
T ss_pred cHHHHHHHHHhc--CCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcC----CC--HHHHHHHHHHHHHHhcChhh
Confidence 356666766654 78998 9999999999999999999999999998742 11 12345555565555544444
Q ss_pred CCChhhhc
Q 018919 323 CRSLKEIT 330 (349)
Q Consensus 323 ~~~i~~l~ 330 (349)
..++.++.
T Consensus 267 ~~~~~~~~ 274 (305)
T 2nv1_A 267 IAELSKEL 274 (305)
T ss_dssp HHHHTSCC
T ss_pred HHHHHHHh
Confidence 43444443
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-08 Score=92.64 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=96.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCC---CCchh-----HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPR---LGRRE-----ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT- 203 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~---~g~r~-----~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~- 203 (349)
+.+.+.+.++.+.+.|+|+|++.+.... .|.-. +-+.++ .+.+. .+.++++|+..
T Consensus 29 ~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G---------------~~~~~~~~~v~~ir~~~~ 93 (262)
T 2ekc_A 29 DYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNG---------------IRFEDVLELSETLRKEFP 93 (262)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTT---------------CCHHHHHHHHHHHHHHCT
T ss_pred ChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcC---------------CCHHHHHHHHHHHHhhcC
Confidence 4567788899999999999998663211 01000 001111 11122 57799999988
Q ss_pred CCcEEEEEecC-------HHHHHHHHHcCCCEEEEec---------------CCCC-----CC-----------------
Q 018919 204 KLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGAR-----QL----------------- 239 (349)
Q Consensus 204 ~~pv~vK~v~~-------~~~a~~a~~~G~d~I~v~~---------------~gg~-----~~----------------- 239 (349)
++|+++-+..+ .+.++.+.++|+|++++.. ||-. ..
T Consensus 94 ~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gf 173 (262)
T 2ekc_A 94 DIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEM 173 (262)
T ss_dssp TSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSC
T ss_pred CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCC
Confidence 89998743333 3567889999999998752 1100 00
Q ss_pred ------C--Cc-------hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 240 ------D--YV-------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 240 ------~--~~-------~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
. .| ....+.+.++++.. ++||++.+||++++++.+ +..|||+|.+||+++....
T Consensus 174 iy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~--~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~~~ 242 (262)
T 2ekc_A 174 TYFVSVTGTTGAREKLPYERIKKKVEEYRELC--DKPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKLAG 242 (262)
T ss_dssp EEEESSCC---------CHHHHHHHHHHHHHC--CSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHHHH
T ss_pred EEEEecCCccCCCCCcCcccHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhhhh
Confidence 0 01 11225566666654 799999999999999988 8899999999999998653
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-08 Score=92.79 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=107.8
Q ss_pred hHHHHHHHHHcCCeEEecCCC-------------CCCHHHHHhhCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEE
Q 018919 90 EYATARAASAAGTIMTLSSWS-------------TSSVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~-------------~~~~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~ 154 (349)
+...|+.+.++|...+.--.. ...++.|.+... ....+-+..-.. ...++.++++|+|.|.
T Consensus 20 ~~eqa~iae~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~aVsIPVm~k~righ----~~EAqilea~GaD~ID 95 (291)
T 3o07_A 20 TPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVSIPVMAKVRIGH----FVEAQIIEALEVDYID 95 (291)
T ss_dssp SHHHHHHHHHHTCSEEEECSSCHHHHHTTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTC----HHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHhCchhhhhccCCCchhhhcCCccccCCHHHHHHHHHhCCCCeEEEEecCc----HHHHHHHHHcCCCEEe
Confidence 457899999999876542110 123444443322 222333332111 3456778889999884
Q ss_pred EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHH-HhcCCcEEEEEecCHHHHHHHHHcCCCEEEEec
Q 018919 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQ-TITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 155 i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~-~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
-+ +. ..|. . .+..+. ..+++|+++ ++.+.++|.++++.|+|.|-..+
T Consensus 96 es-ev--------------ltpa-----d-----------~~~~I~k~~f~vpfv~-~~~~l~EAlrri~eGA~mIrTtg 143 (291)
T 3o07_A 96 ES-EV--------------LTPA-----D-----------WTHHIEKDKFKVPFVC-GAKDLGEALRRINEGAAMIRTKG 143 (291)
T ss_dssp EE-TT--------------SCCS-----C-----------SSCCCCGGGCSSCEEE-EESSHHHHHHHHHHTCSEEEECC
T ss_pred cc-cC--------------CCHH-----H-----------HHHHhhhhcCCCcEEe-eCCCHHHHHHHHHCCCCEEEecC
Confidence 32 10 0011 0 111111 245889987 68899999999999999999865
Q ss_pred CCCCC---------------------C-CC---------chhhHHHHHHHHHHhcCCCcE--EEecCCCCHHHHHHHHHh
Q 018919 234 HGARQ---------------------L-DY---------VPATIMALEEVVKATQGRIPV--FLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 234 ~gg~~---------------------~-~~---------~~~~~~~l~~i~~~~~~~ipv--ia~GGI~~~~dv~kal~~ 280 (349)
..|+. + +. -.++++.+.++++.. ++|| |++|||.|++|+.+++.+
T Consensus 144 e~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~~--~IPVV~IAnGGI~TpedA~~~le~ 221 (291)
T 3o07_A 144 EAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKG--KLPVVNFAAGGVATPADAALLMQL 221 (291)
T ss_dssp CTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHT--SCSSCEEBCSSCCSHHHHHHHHHT
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHcc--CCCEEEecCCCCCCHHHHHHHHHh
Confidence 43321 2 10 134678899988876 6888 569999999999999999
Q ss_pred CCCEEEEchHHHH
Q 018919 281 GASGIFIGRPVVY 293 (349)
Q Consensus 281 GA~~V~ig~~~l~ 293 (349)
|||+|+|||+++.
T Consensus 222 GaDGVmVGrAI~~ 234 (291)
T 3o07_A 222 GCDGVFVGSGIFK 234 (291)
T ss_dssp TCSCEEECGGGGG
T ss_pred CCCEEEEchHHhC
Confidence 9999999998764
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.8e-09 Score=102.06 Aligned_cols=139 Identities=8% Similarity=-0.023 Sum_probs=93.6
Q ss_pred HHHHHHH-HcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc---ccCC--C-CCCch-HHHHHHHHHhcC-CcEEEE
Q 018919 140 QLVRRAE-RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK---NFQG--L-DLGKM-DEDVKWLQTITK-LPILVK 210 (349)
Q Consensus 140 ~~~~~~~-~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~---~~~~--~-~~~~~-~~~i~~i~~~~~-~pv~vK 210 (349)
+.++++. ++|+|+|+||..|.. +-++|..|.. ..+ ...+ + ....+ .+.++.+|+.++ -||.+|
T Consensus 178 ~AA~~a~~~aGfDgVEih~a~GY-------Ll~QFlsp~~-N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vR 249 (379)
T 3aty_A 178 EGAKNAIFKAGFDGVEIHGANGY-------LLDAFFRESS-NKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLR 249 (379)
T ss_dssp HHHHHHHHTSCCSEEEEEECTTS-------HHHHHHSTTT-CCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCcCch-------HHhhccCCCC-CccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4556778 899999999987621 1122222210 001 0001 0 01234 677999999885 489999
Q ss_pred EecC---------------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 018919 211 GVLT---------------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 211 ~v~~---------------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 275 (349)
+... .+.++.+.++|+|+|.+++.+... ...+ .+ +.++++.+ ++|||+.||| +++++.
T Consensus 250 is~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~--~~~~-~~-~~~ir~~~--~iPvi~~G~i-t~~~a~ 322 (379)
T 3aty_A 250 ISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVN--QQIG-DV-VAWVRGSY--SGVKISNLRY-DFEEAD 322 (379)
T ss_dssp ECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTS--CCCC-CH-HHHHHTTC--CSCEEEESSC-CHHHHH
T ss_pred ECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCC--CCcc-HH-HHHHHHHC--CCcEEEECCC-CHHHHH
Confidence 7642 234677889999999997632111 0111 14 66677666 7999999999 999999
Q ss_pred HHHHhC-CCEEEEchHHHH
Q 018919 276 KALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 276 kal~~G-A~~V~ig~~~l~ 293 (349)
++|+.| ||+|++||+++.
T Consensus 323 ~~l~~g~aD~V~igR~~l~ 341 (379)
T 3aty_A 323 QQIREGKVDAVAFGAKFIA 341 (379)
T ss_dssp HHHHTTSCSEEEESHHHHH
T ss_pred HHHHcCCCeEEEecHHHHh
Confidence 999988 999999999985
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=98.93 E-value=8.5e-09 Score=94.99 Aligned_cols=180 Identities=18% Similarity=0.174 Sum_probs=114.4
Q ss_pred ecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhC-C-CceEEEEeecCC----h--hHHHH
Q 018919 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-P-GIRFFQLYVYKD----R--NVVAQ 140 (349)
Q Consensus 69 ~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~-~-~~~~~Ql~~~~~----~--~~~~~ 140 (349)
.+..|+.++||.... + -..+++++.+.|+..++.+.. .++.+.+.. . .+..+|+....+ . +...+
T Consensus 31 ~id~~~~l~p~~~~~--~---~~~~~~~~~~~g~~~i~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~~~ 103 (273)
T 2qjg_A 31 PMDHGVSNGPIKGLI--D---IRKTVNDVAEGGANAVLLHKG--IVRHGHRGYGKDVGLIIHLSGGTAISPNPLKKVIVT 103 (273)
T ss_dssp ECCHHHHHCSCTTSS--S---HHHHHHHHHHHTCSEEEECHH--HHHSCCCSSSCCCEEEEECEECCTTSSSTTCCEECS
T ss_pred EcccccccCCCcchh--h---HHHHHHHHHhcCCCEEEeCHH--HHHHHHHhhcCCCCEEEEEcCCCcCCCCcccchHHH
Confidence 456677888885432 1 237889999999988764220 011111111 1 245567654321 1 11245
Q ss_pred HHHHHHHcCCCEE--EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchH---HHHHHHHHhcCCcEEEEEe---
Q 018919 141 LVRRAERAGFKAI--ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD---EDVKWLQTITKLPILVKGV--- 212 (349)
Q Consensus 141 ~~~~~~~~G~~~i--~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~pv~vK~v--- 212 (349)
.++++.+.|++.+ .++..++. ...+. +.+.++.+.+++|+++...
T Consensus 104 ~v~~a~~~Ga~~v~~~l~~~~~~---------------------------~~~~~~~~~~v~~~~~~~g~~viv~~~~~G 156 (273)
T 2qjg_A 104 TVEEAIRMGADAVSIHVNVGSDE---------------------------DWEAYRDLGMIAETCEYWGMPLIAMMYPRG 156 (273)
T ss_dssp CHHHHHHTTCSEEEEEEEETSTT---------------------------HHHHHHHHHHHHHHHHHHTCCEEEEEEECS
T ss_pred HHHHHHHcCCCEEEEEEecCCCC---------------------------HHHHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 6778889999999 44443320 00112 2344444456999998752
Q ss_pred ------cCH---HHH-HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC--HHH----HHH
Q 018919 213 ------LTA---EDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR--GTD----VFK 276 (349)
Q Consensus 213 ------~~~---~~a-~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~--~~d----v~k 276 (349)
.+. +++ +.+.++|+|+|.++.. ..++.+.++++.+ ++||++.|||++ .+| +.+
T Consensus 157 ~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~---------~~~~~l~~i~~~~--~ipvva~GGi~~~~~~~~~~~~~~ 225 (273)
T 2qjg_A 157 KHIQNERDPELVAHAARLGAELGADIVKTSYT---------GDIDSFRDVVKGC--PAPVVVAGGPKTNTDEEFLQMIKD 225 (273)
T ss_dssp TTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC---------SSHHHHHHHHHHC--SSCEEEECCSCCSSHHHHHHHHHH
T ss_pred cccCCCCCHhHHHHHHHHHHHcCCCEEEECCC---------CCHHHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHHH
Confidence 233 344 8899999999998631 2467788888776 799999999995 778 555
Q ss_pred HHHhCCCEEEEchHHHH
Q 018919 277 ALALGASGIFIGRPVVY 293 (349)
Q Consensus 277 al~~GA~~V~ig~~~l~ 293 (349)
++.+||++|.+||.++.
T Consensus 226 ~~~~Ga~gv~vg~~i~~ 242 (273)
T 2qjg_A 226 AMEAGAAGVAVGRNIFQ 242 (273)
T ss_dssp HHHHTCSEEECCHHHHT
T ss_pred HHHcCCcEEEeeHHhhC
Confidence 66899999999999874
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.9e-08 Score=88.56 Aligned_cols=172 Identities=16% Similarity=0.156 Sum_probs=107.0
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC--CceEEEE--eec--CChhHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQL--YVY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~--~~~~~Ql--~~~--~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~ 164 (349)
..+.+.|.+.|+..+.- .+.-+....+... +....-+ |+. ...+.-...++.+.+.|++.|.+.+|...
T Consensus 77 ~~lc~eA~~~g~aaVCV--~P~~V~~a~~~L~~s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmVINig~--- 151 (288)
T 3oa3_A 77 DVLCAEAKEYGFATVCV--RPDYVSRAVQYLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQNGASELDMVMNYPW--- 151 (288)
T ss_dssp HHHHHHHHHHTCSEEEE--CGGGHHHHHHHTTTSSCEEEEEESTTTSCSCHHHHHHHHHHHHHTTCSEEEEECCHHH---
T ss_pred HHHHHHHHhcCCcEEEE--CHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeehhh---
Confidence 36788888888775431 1222333333322 2221111 221 23344455677888899999987776310
Q ss_pred hhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-----cCHHH----HHHHHHcCCCEEEEecC
Q 018919 165 READIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 165 r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-----~~~~~----a~~a~~~G~d~I~v~~~ 234 (349)
+. . .+-+. .++|+.+++..+-| .+|.+ ++.++ ++.+.++|+|+|..|.
T Consensus 152 ----lk------------~----g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTST- 209 (288)
T 3oa3_A 152 ----LS------------E----KRYTDVFQDIRAVRLAAKDA-ILKVILETSQLTADEIIAGCVLSSLAGADYVKTST- 209 (288)
T ss_dssp ----HH------------T----TCHHHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCC-
T ss_pred ----hc------------C----CcHHHHHHHHHHHHHHhcCC-CceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcCC-
Confidence 00 0 01223 57799999887767 47876 35555 6778899999999983
Q ss_pred CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 235 GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 235 gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
|.......+.....+.++.+..+.+++|.++|||++.+|+++++++||+.++..+
T Consensus 210 Gf~~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~RiGtS~ 264 (288)
T 3oa3_A 210 GFNGPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERLGASA 264 (288)
T ss_dssp SSSSCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 3211111233455555555444568999999999999999999999999665544
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-08 Score=88.29 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=81.0
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 273 (349)
+.++. ++..+.++++. +.++++++.+.+.|+|.|.+... .+..++.+.++++.++.++||+++|||. .++
T Consensus 92 ~~~~~-~~~~g~~~~~g-~~t~~e~~~a~~~G~d~v~v~~t-------~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~ 161 (212)
T 2v82_A 92 EVIRR-AVGYGMTVCPG-CATATEAFTALEAGAQALKIFPS-------SAFGPQYIKALKAVLPSDIAVFAVGGVT-PEN 161 (212)
T ss_dssp HHHHH-HHHTTCEEECE-ECSHHHHHHHHHTTCSEEEETTH-------HHHCHHHHHHHHTTSCTTCEEEEESSCC-TTT
T ss_pred HHHHH-HHHcCCCEEee-cCCHHHHHHHHHCCCCEEEEecC-------CCCCHHHHHHHHHhccCCCeEEEeCCCC-HHH
Confidence 44444 44467787765 78999999999999999987321 1234566777766553259999999997 899
Q ss_pred HHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 018919 274 VFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMAL 320 (349)
Q Consensus 274 v~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~ 320 (349)
+.+++++||++|.+|++++.+. +..+...+.++.+++.++...++
T Consensus 162 i~~~~~~Ga~gv~vGsai~~~~--~~~~d~~~~~~~l~~~~~~~~~~ 206 (212)
T 2v82_A 162 LAQWIDAGCAGAGLGSDLYRAG--QSVERTAQQAAAFVKAYREAVQL 206 (212)
T ss_dssp HHHHHHHTCSEEEECTTTCCTT--CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEEChHHhCCC--CCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999986420 01234555566666655555443
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=6e-08 Score=86.51 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC-CCC-chhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-LDY-VPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~-~~~-~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
+.+++++. +..+.+ .+.++++++.+.+.|+|+|.+++..+++ ..+ .+..++.+.++++.+ ++||++.||| ++
T Consensus 102 ~~~~~~~~--~~~ig~-sv~t~~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~--~~pvia~GGI-~~ 175 (221)
T 1yad_A 102 KQIRARFP--HLHIGR-SVHSLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI--SIPVIAIGGM-TP 175 (221)
T ss_dssp HHHHHHCT--TCEEEE-EECSHHHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHC--CSCEEEESSC-CG
T ss_pred HHHHHHCC--CCEEEE-EcCCHHHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CH
Confidence 34444432 444444 3568999999999999999986532222 111 133577788877766 7999999999 99
Q ss_pred HHHHHHHHhCCCEEEEchHHHH
Q 018919 272 TDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+++.+++++||++|.+|+.++.
T Consensus 176 ~nv~~~~~~Ga~gv~vgs~i~~ 197 (221)
T 1yad_A 176 DRLRDVKQAGADGIAVMSGIFS 197 (221)
T ss_dssp GGHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHcCCCEEEEhHHhhC
Confidence 9999999999999999999874
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-07 Score=83.95 Aligned_cols=197 Identities=14% Similarity=0.058 Sum_probs=113.2
Q ss_pred eeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCH-----HHHHhhCCCceEEEE--eecCCh
Q 018919 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV-----EEVASTGPGIRFFQL--YVYKDR 135 (349)
Q Consensus 63 ~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~-----e~i~~~~~~~~~~Ql--~~~~~~ 135 (349)
.+|.|++|.+.+++..=-+ .+ ...+.++....|+-.+.-......+ +.+.+..+ .++... .+.++.
T Consensus 4 l~i~~~~~~srl~~Gtgky---~~---~~~~~~ai~asg~eivtva~rR~~~~~~~~~~~~~~i~-~~~~lpntaG~~ta 76 (268)
T 2htm_A 4 WKVGPVELKSRLILGSGKY---ED---FGVMREAIAAAKAEVVTVSVRRVELKAPGHVGLLEALE-GVRLLPNTAGARTA 76 (268)
T ss_dssp EEETTEEECCSEEEECSSC---SC---HHHHHHHHHHTTCSEEEEEEEECC-------CHHHHTT-TSEEEEBCTTCCSH
T ss_pred eEECCEEeecceEEecCCC---CC---HHHHHHHHHHhCCCEEEEEccccCCCCCCcccHHHHHh-hhhccCcccCCCCH
Confidence 6789999999999876222 12 2357778888888755311111111 22333223 112211 112333
Q ss_pred hHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEEEEe
Q 018919 136 NVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILVKGV 212 (349)
Q Consensus 136 ~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~v 212 (349)
+.....++.+.+. |-+.+-+.+=.- + + ...++..+.++..+... +..++-...
T Consensus 77 eeAv~~a~lare~~gt~~iKlEvi~d---------------~-~--------~l~pD~~~tv~aa~~L~k~Gf~Vlpy~~ 132 (268)
T 2htm_A 77 EEAVRLARLGRLLTGERWVKLEVIPD---------------P-T--------YLLPDPLETLKAAERLIEEDFLVLPYMG 132 (268)
T ss_dssp HHHHHHHHHHHHHHCCSEEBCCCCSC---------------T-T--------TTCCCHHHHHHHHHHHHHTTCEECCEEC
T ss_pred HHHHHHHHhhhHhcCcceeeeeeccC---------------c-c--------ccCcCHHHHHHHHHHHHHCCCEEeeccC
Confidence 4333333334433 555543222100 0 0 11233334444444322 444432335
Q ss_pred cCHHHHHHHHHcCCCEEEEecC-CCCCCCCchhhHHHHHHHHHHhcCC-CcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 213 LTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~-ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
.+++.++++.++|+++|.--+. -|+ ..|..+.+.+..+++.. .+ +|||++|||.+++|+.+++++|||+|++|++
T Consensus 133 ~D~~~ak~l~~~G~~aVmPlg~pIGs--G~Gi~~~~~L~~i~~~~-~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSA 209 (268)
T 2htm_A 133 PDLVLAKRLAALGTATVMPLAAPIGS--GWGVRTRALLELFAREK-ASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTA 209 (268)
T ss_dssp SCHHHHHHHHHHTCSCBEEBSSSTTT--CCCSTTHHHHHHHHHTT-TTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHH
T ss_pred CCHHHHHHHHhcCCCEEEecCccCcC--CcccCCHHHHHHHHHhc-CCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 7899999999999999965222 121 12344566677777622 26 9999999999999999999999999999999
Q ss_pred HHH
Q 018919 291 VVY 293 (349)
Q Consensus 291 ~l~ 293 (349)
+..
T Consensus 210 I~~ 212 (268)
T 2htm_A 210 IAE 212 (268)
T ss_dssp HHT
T ss_pred HhC
Confidence 874
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.86 E-value=9e-09 Score=93.61 Aligned_cols=152 Identities=13% Similarity=0.125 Sum_probs=96.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc-----cCCCCCCch-HHHHHHHHHhcCCc
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN-----FQGLDLGKM-DEDVKWLQTITKLP 206 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~-----~~~~~~~~~-~~~i~~i~~~~~~p 206 (349)
.+.+.+.+.++.+.++|+|.|+|.+....+ +-+|..+.. ...-.+.+. ++.++++|+. +|
T Consensus 25 P~~~~t~~~~~~l~~~GaD~iElGiPfSDP------------~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~--~P 90 (252)
T 3tha_A 25 PNLQTSEAFLQRLDQSPIDILELGVAYSDP------------IADGEIIADAAKIALDQGVDIHSVFELLARIKTK--KA 90 (252)
T ss_dssp SCHHHHHHHHHTGGGSSCSEEEEECCCSCC------------CSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCS--SE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCC------------CCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcC--CC
Confidence 466788999999999999999988743211 001111100 000012233 6777777754 79
Q ss_pred EEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCCC----------------------C----
Q 018919 207 ILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR----------------------Q---- 238 (349)
Q Consensus 207 v~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg~----------------------~---- 238 (349)
+++-+..|+ ..++.|.++|+|++++-. ||-. .
T Consensus 91 ivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~ 170 (252)
T 3tha_A 91 LVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYL 170 (252)
T ss_dssp EEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEE
T ss_pred EEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEE
Confidence 988765443 457889999999998741 1110 0
Q ss_pred --C--CCchh-h-----HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHH
Q 018919 239 --L--DYVPA-T-----IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 301 (349)
Q Consensus 239 --~--~~~~~-~-----~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~ 301 (349)
. -.|.. . .+.+.++++.. ++||++.+||++++++.++.. +||+|.||++++..+...+.+
T Consensus 171 Vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk~i~~~~~~ 240 (252)
T 3tha_A 171 LASIGITGTKSVEEAILQDKVKEIRSFT--NLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVKCFKQGNLD 240 (252)
T ss_dssp ECCSCSSSCSHHHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHHHTTSSCHH
T ss_pred EecCCCCCcccCCCHHHHHHHHHHHHhc--CCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHHHHHhcCHH
Confidence 0 01211 1 23444444443 699999999999999976654 799999999999876554443
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.85 E-value=5.4e-08 Score=88.40 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.+.|++.|.+++........+ ..++.+.++++.+ ++||+++|||++++|+.+++++||++|++|++++.
T Consensus 154 ~e~~~~~~~~G~~~i~~~~~~~~g~~~g-~~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~ 229 (253)
T 1thf_D 154 RDWVVEVEKRGAGEILLTSIDRDGTKSG-YDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 229 (253)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTSCSC-CCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHCCCCEEEEEeccCCCCCCC-CCHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHc
Confidence 4668999999999998864221111122 3578888887765 79999999999999999999999999999999985
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4.9e-08 Score=95.90 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=126.3
Q ss_pred HHHHHHHHHcCCeEEecC--------CCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 91 YATARAASAAGTIMTLSS--------WSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~--------~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
..+|++..+. +. ++|- .+...+.++++...-|.+.+=|. .++- .+..+..+|++++.+....
T Consensus 71 ~~iA~~y~~~-A~-~IsvLTd~~~F~gs~~dL~~vr~~v~lPvLrKDFI-~d~~----Qi~ea~~~GAD~ILLi~a~--- 140 (452)
T 1pii_A 71 ARIAAIYKHY-AS-AISVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFI-IDPY----QIYLARYYQADACLLMLSV--- 140 (452)
T ss_dssp HHHHHHHTTT-CS-EEEEECCSTTTCCCTTHHHHHHHHCCSCEEEESCC-CSHH----HHHHHHHTTCSEEEEETTT---
T ss_pred HHHHHHHHhh-Cc-EEEEEecccccCCCHHHHHHHHHhcCCCeEEEecc-CCHH----HHHHHHHcCCCEEEEEccc---
Confidence 4677777665 43 4442 22233445555444344444343 2322 3455889999999876532
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY 241 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~ 241 (349)
.+... .+.++..++ .++.+++ .+.+.+++++|.++|+|.|-+.|.+-+.
T Consensus 141 -------------------------l~~~~l~~l~~~a~~-lgm~~Lv-Evh~~eE~~~A~~lga~iIGinnr~L~t--- 190 (452)
T 1pii_A 141 -------------------------LDDDQYRQLAAVAHS-LEMGVLT-EVSNEEEQERAIALGAKVVGINNRDLRD--- 190 (452)
T ss_dssp -------------------------CCHHHHHHHHHHHHH-TTCEEEE-EECSHHHHHHHHHTTCSEEEEESEETTT---
T ss_pred -------------------------CCHHHHHHHHHHHHH-cCCeEEE-EeCCHHHHHHHHHCCCCEEEEeCCCCCC---
Confidence 01111 234555554 5887776 6789999999999999999988765432
Q ss_pred chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHc
Q 018919 242 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 321 (349)
Q Consensus 242 ~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~ 321 (349)
-...++...++.+.++.++++|+.|||++++|+.++..+ |++|.||++++.. +.....++.+.. ...+.|
T Consensus 191 ~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~------~d~~~~~~~l~~---~~~KIC 260 (452)
T 1pii_A 191 LSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSALMAH------DDLHAAVRRVLL---GENKVC 260 (452)
T ss_dssp TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTC------SCHHHHHHHHHH---CSCEEC
T ss_pred CCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCC------cCHHHHHHHHHH---Hhcccc
Confidence 233466666777777667999999999999999999999 9999999999862 222334444432 245688
Q ss_pred CCCChhhhc
Q 018919 322 GCRSLKEIT 330 (349)
Q Consensus 322 G~~~i~~l~ 330 (349)
|.++.+|+.
T Consensus 261 Git~~eda~ 269 (452)
T 1pii_A 261 GLTRGQDAK 269 (452)
T ss_dssp CCCSHHHHH
T ss_pred CCCcHHHHH
Confidence 999888775
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-08 Score=90.72 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=88.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHH
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAE 216 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~ 216 (349)
..+.++..++.|+++|-+ ++-+. .| .. ..++++.+++.+++||..|.. .+..
T Consensus 67 p~~~A~~~~~~GA~~isv-lt~~~----------~f---------------~G-~~~~l~~i~~~v~lPvl~kdfI~d~~ 119 (254)
T 1vc4_A 67 PVEAALAYARGGARAVSV-LTEPH----------RF---------------GG-SLLDLKRVREAVDLPLLRKDFVVDPF 119 (254)
T ss_dssp HHHHHHHHHHTTCSEEEE-ECCCS----------SS---------------CC-CHHHHHHHHHHCCSCEEEESCCCSHH
T ss_pred HHHHHHHHHHcCCCEEEE-ecchh----------hh---------------cc-CHHHHHHHHHhcCCCEEECCcCCCHH
Confidence 457788889999999865 22110 00 00 146788888888889888874 5666
Q ss_pred HHHHHHHcCCCEEEEecC----------------CCC---------------------------CCCCchhhHHHHHHHH
Q 018919 217 DARIAVQAGAAGIIVSNH----------------GAR---------------------------QLDYVPATIMALEEVV 253 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~----------------gg~---------------------------~~~~~~~~~~~l~~i~ 253 (349)
++..+.++|||+|.+... |-. .+..-...++.+.++.
T Consensus 120 qi~~a~~~GAD~VlL~~~~l~~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~gad~IGvn~~~l~~~~~dl~~~~~L~ 199 (254)
T 1vc4_A 120 MLEEARAFGASAALLIVALLGELTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLG 199 (254)
T ss_dssp HHHHHHHTTCSEEEEEHHHHGGGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHH
T ss_pred HHHHHHHcCCCEEEECccchHHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCCEEEEccccCcCCCCCHHHHHHHH
Confidence 788888888888887521 000 0001122334455555
Q ss_pred HHhcC---CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 254 KATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 254 ~~~~~---~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.++. ++|+++.|||++++|+.++.. ||++|.||++++.
T Consensus 200 ~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~ 241 (254)
T 1vc4_A 200 RLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMR 241 (254)
T ss_dssp HHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHT
T ss_pred HhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcC
Confidence 55543 689999999999999999999 9999999999985
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-07 Score=86.64 Aligned_cols=162 Identities=13% Similarity=0.060 Sum_probs=107.5
Q ss_pred HHHHHHHHHcCCeEEecC---C--CCCCHHHHHh---hCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 91 YATARAASAAGTIMTLSS---W--STSSVEEVAS---TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~---~--~~~~~e~i~~---~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
..+|+++.+. .. ++|- . -..+++++.+ ...-|.+.|=|. .++- .+..+..+|++++.+....
T Consensus 64 ~~iA~~y~~~-A~-~IsVlTd~~~F~gs~~dL~~ir~~v~lPvLrKDfi-~~~~----qi~ea~~~GAD~ilLi~a~--- 133 (251)
T 1i4n_A 64 EDFIRMYDEL-AD-AISILTEKHYFKGDPAFVRAARNLTCRPILAKDFY-IDTV----QVKLASSVGADAILIIARI--- 133 (251)
T ss_dssp HHHHHHHHHH-CS-EEEEECCCSSSCCCTHHHHHHHTTCCSCEEEECCC-CSTH----HHHHHHHTTCSEEEEEGGG---
T ss_pred HHHHHHHHHh-CC-ceEEEecccccCCCHHHHHHHHHhCCCCEEEeeCC-CCHH----HHHHHHHcCCCEEEEeccc---
Confidence 4688887776 43 3432 1 1124555543 333344444444 2322 2445889999999876532
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHc-CCCEEEEecCCCCCCC
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQA-GAAGIIVSNHGARQLD 240 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~-G~d~I~v~~~gg~~~~ 240 (349)
.+... .+.++..++ .++.+++ .+.+.++++++.++ |+|.|-+.|.+-+..
T Consensus 134 -------------------------l~~~~l~~l~~~a~~-lGl~~lv-Ev~~~eE~~~A~~l~g~~iIGinnr~l~t~- 185 (251)
T 1i4n_A 134 -------------------------LTAEQIKEIYEAAEE-LGMDSLV-EVHSREDLEKVFSVIRPKIIGINTRDLDTF- 185 (251)
T ss_dssp -------------------------SCHHHHHHHHHHHHT-TTCEEEE-EECSHHHHHHHHTTCCCSEEEEECBCTTTC-
T ss_pred -------------------------CCHHHHHHHHHHHHH-cCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCcccccC-
Confidence 01111 233444444 5877776 57899999999999 999999987653322
Q ss_pred CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 241 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 241 ~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
...++...++.+.++.++++|+.|||++++|+.++..+ |++|.||++++.
T Consensus 186 --~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVG~aimr 235 (251)
T 1i4n_A 186 --EIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK-VNAVLVGTSIMK 235 (251)
T ss_dssp --CBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-CSEEEECHHHHH
T ss_pred --CCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEcHHHcC
Confidence 22344555666666667899999999999999999999 999999999986
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=98.80 E-value=8.5e-08 Score=86.18 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=102.7
Q ss_pred EeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc-------------cC-CCCCCch-H
Q 018919 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN-------------FQ-GLDLGKM-D 193 (349)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~-------------~~-~~~~~~~-~ 193 (349)
+....+++...+.++.+.+.|++.+++++.+|..-.-.+.++..+... .++.-. +. ....|.+ .
T Consensus 39 Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~-~iGaGTVlt~~~a~~Ai~AGA~fIvsP~~~~ 117 (232)
T 4e38_A 39 VIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEM-LIGAGTILNGEQALAAKEAGATFVVSPGFNP 117 (232)
T ss_dssp EECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTC-EEEEECCCSHHHHHHHHHHTCSEEECSSCCH
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCC-EEeECCcCCHHHHHHHHHcCCCEEEeCCCCH
Confidence 344456777777788888888888888887764322234444444100 000000 00 0334555 5
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 273 (349)
+.++..++ .++|++. ++.|+.++.+|.++|+|.|.++..+ ..+| .+.|+.++..+ .++|+++.|||. .+.
T Consensus 118 ~vi~~~~~-~gi~~ip-Gv~TptEi~~A~~~Gad~vK~FPa~---~~gG---~~~lkal~~p~-p~ip~~ptGGI~-~~n 187 (232)
T 4e38_A 118 NTVRACQE-IGIDIVP-GVNNPSTVEAALEMGLTTLKFFPAE---ASGG---ISMVKSLVGPY-GDIRLMPTGGIT-PSN 187 (232)
T ss_dssp HHHHHHHH-HTCEEEC-EECSHHHHHHHHHTTCCEEEECSTT---TTTH---HHHHHHHHTTC-TTCEEEEBSSCC-TTT
T ss_pred HHHHHHHH-cCCCEEc-CCCCHHHHHHHHHcCCCEEEECcCc---cccC---HHHHHHHHHHh-cCCCeeeEcCCC-HHH
Confidence 56666555 5999887 6889999999999999999995431 1122 35666666555 379999999995 799
Q ss_pred HHHHHHhCCCEEEEchHHH
Q 018919 274 VFKALALGASGIFIGRPVV 292 (349)
Q Consensus 274 v~kal~~GA~~V~ig~~~l 292 (349)
+.+++++||.++.+|+.+.
T Consensus 188 ~~~~l~aGa~~~vgGs~l~ 206 (232)
T 4e38_A 188 IDNYLAIPQVLACGGTWMV 206 (232)
T ss_dssp HHHHHTSTTBCCEEECGGG
T ss_pred HHHHHHCCCeEEEECchhc
Confidence 9999999999999998765
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-07 Score=89.02 Aligned_cols=45 Identities=38% Similarity=0.626 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCCcE--EEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 247 MALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 247 ~~l~~i~~~~~~~ipv--ia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.+.++.+.. ++|| ++.|||.+++|+.+++++|||+|+||++++.
T Consensus 230 ell~~i~~~~--~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~ 276 (330)
T 2yzr_A 230 EVLLEVKKLG--RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFK 276 (330)
T ss_dssp HHHHHHHHHT--SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHT
T ss_pred HHHHHHHHhC--CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhc
Confidence 5666666654 7888 6999999999999999999999999999984
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3e-08 Score=89.57 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh---CCCEEEEchHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPV 291 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~---GA~~V~ig~~~ 291 (349)
.+.++.+.++|++.|.+++....+...+ ..++.+.++++.+ ++||+++|||++++|+.+++++ ||++|++||++
T Consensus 152 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g-~~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 152 WDVLERLDSEGCSRFVVTDITKDGTLGG-PNLDLLAGVADRT--DAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTTTTTSC-CCHHHHHHHHTTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHhCCCCEEEEEecCCccccCC-CCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 5778999999999999865321111123 3678888887765 7999999999999999999998 99999999998
Q ss_pred HH
Q 018919 292 VY 293 (349)
Q Consensus 292 l~ 293 (349)
+.
T Consensus 229 ~~ 230 (244)
T 2y88_A 229 YA 230 (244)
T ss_dssp HT
T ss_pred HC
Confidence 75
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-07 Score=87.95 Aligned_cols=145 Identities=15% Similarity=0.138 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc--cCC-CCC-Cch-HHHHHHHHHhcC-CcEEEEE
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--FQG-LDL-GKM-DEDVKWLQTITK-LPILVKG 211 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~--~~~-~~~-~~~-~~~i~~i~~~~~-~pv~vK~ 211 (349)
..+.+++++++|+|+|+||... |+ +-++|..|. ...+. ..| +.+ ..| .+.++.+|+.++ -+|.+|.
T Consensus 154 F~~AA~rA~~AGFDgVEIH~ah---GY----Ll~QFLSp~-tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRl 225 (358)
T 4a3u_A 154 YEKAARHALKAGFDGVQIHAAN---GY----LIDEFIRDS-TNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRL 225 (358)
T ss_dssp HHHHHHHHHHTTCSEEEEEECT---TS----HHHHHHSTT-TCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred HHHHHHHHHHcCCCeEeecccC---CC----cHHhceecc-cCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEe
Confidence 3466778889999999999854 22 223333331 01110 111 111 134 678999999883 4688887
Q ss_pred ecC-----------H----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 018919 212 VLT-----------A----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 276 (349)
Q Consensus 212 v~~-----------~----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k 276 (349)
..+ . +.++.+.+.|++.+.++..................++++.. ..||+ .||+.+++++.+
T Consensus 226 s~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik~~~--~~~v~-~~g~~~~~~ae~ 302 (358)
T 4a3u_A 226 SPNGEIQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIRKVF--KPPLV-LNQDYTFETAQA 302 (358)
T ss_dssp CCSSCBTTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCSSSBCSSCCCHHHHHHHC--CSCEE-EESSCCHHHHHH
T ss_pred ccCcccCCCcccchHHHHHHHHHhhhccCccccccccccccCcccccccHHHHHHHHHhc--CCcEE-EeCCCCHHHHHH
Confidence 521 1 23566788999999987532111111000112234455554 45555 678899999999
Q ss_pred HHHhC-CCEEEEchHHHH
Q 018919 277 ALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 277 al~~G-A~~V~ig~~~l~ 293 (349)
+|+.| ||+|.+||+++.
T Consensus 303 ~l~~G~aD~V~~gR~~la 320 (358)
T 4a3u_A 303 ALDSGVADAISFGRPFIG 320 (358)
T ss_dssp HHHHTSCSEEEESHHHHH
T ss_pred HHHcCCceEeHhhHHHHh
Confidence 99998 999999999985
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-07 Score=82.36 Aligned_cols=185 Identities=12% Similarity=0.098 Sum_probs=111.5
Q ss_pred hhhHHHHHHHHHcCCeE-EecC-----CCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCC
Q 018919 88 EGEYATARAASAAGTIM-TLSS-----WSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (349)
Q Consensus 88 ~~~~~la~aa~~~G~~~-~~~~-----~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p 160 (349)
+....+++.+. .|+.. -++. .+...++++++..+ .+....+.. .+.. ...++.+.++|++.+.++...+
T Consensus 13 ~~~~~~~~~~~-~~~diie~G~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~-~~~~--~~~~~~~~~~Gad~v~v~~~~~ 88 (211)
T 3f4w_A 13 PEAMVFMDKVV-DDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKI-MDGG--HFESQLLFDAGADYVTVLGVTD 88 (211)
T ss_dssp HHHHHHHHHHG-GGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEE-CSCH--HHHHHHHHHTTCSEEEEETTSC
T ss_pred HHHHHHHHHhh-cCccEEEeCcHHHHhccHHHHHHHHHhCCCCEEEEEEEe-ccch--HHHHHHHHhcCCCEEEEeCCCC
Confidence 34456666664 46554 2341 12223455665544 333333322 2222 2347888999999998764211
Q ss_pred CCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE--ecCH-HHHHHHHHcCCCEEEEecCCC
Q 018919 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG--VLTA-EDARIAVQAGAAGIIVSNHGA 236 (349)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~--v~~~-~~a~~a~~~G~d~I~v~~~gg 236 (349)
.+. .+.++.+++ .++++++-. ..++ +.++.+.+.|+|.|.+.. |.
T Consensus 89 -----------------------------~~~~~~~~~~~~~-~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~-g~ 137 (211)
T 3f4w_A 89 -----------------------------VLTIQSCIRAAKE-AGKQVVVDMICVDDLPARVRLLEEAGADMLAVHT-GT 137 (211)
T ss_dssp -----------------------------HHHHHHHHHHHHH-HTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEEC-CH
T ss_pred -----------------------------hhHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcC-CC
Confidence 011 233555554 477777532 2343 668999999999998752 21
Q ss_pred CCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 237 RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 237 ~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
.....++..++.+.++++.++ ++||+++|||+ ++++.+++++|||+|.+||+++.+ . ...+.++.++++++
T Consensus 138 ~g~~~~~~~~~~i~~l~~~~~-~~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~~-----~-d~~~~~~~l~~~~~ 208 (211)
T 3f4w_A 138 DQQAAGRKPIDDLITMLKVRR-KARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITHA-----A-DPAGEARKISQVLL 208 (211)
T ss_dssp HHHHTTCCSHHHHHHHHHHCS-SCEEEEESSCC-TTTHHHHHTTCCSEEEECHHHHTC-----S-SHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHcC-CCcEEEECCCC-HHHHHHHHHcCCCEEEECHHHcCC-----C-CHHHHHHHHHHHHh
Confidence 100012235677888877653 69999999996 999999999999999999998742 1 22344555555443
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.5e-08 Score=86.62 Aligned_cols=169 Identities=20% Similarity=0.150 Sum_probs=105.8
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhC--CCceEEE-E-ee--cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTG--PGIRFFQ-L-YV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~--~~~~~~Q-l-~~--~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~ 164 (349)
..+.+.|.++|+..+.- .+.-+....+.. .+....- + |+ ....+.-...++.+.+.|++.|.+.+|...
T Consensus 46 ~~lc~eA~~~~~~aVcV--~p~~v~~a~~~L~~s~v~v~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~--- 120 (239)
T 3ngj_A 46 RKLCSEAAEYKFASVCV--NPTWVPLCAELLKGTGVKVCTVIGFPLGATPSEVKAYETKVAVEQGAEEVDMVINIGM--- 120 (239)
T ss_dssp HHHHHHHHHHTCSEEEE--CGGGHHHHHHHHTTSSCEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHH---
T ss_pred HHHHHHHHhcCCcEEEE--CHHHHHHHHHHhCCCCCeEEEEeccCCCCCchHHHHHHHHHHHHcCCCEEEEEeehHH---
Confidence 36778888888775431 111222222211 1111111 1 22 223344456677888889999988876410
Q ss_pred hhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-----cCHHHH----HHHHHcCCCEEEEecC
Q 018919 165 READIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-----LTAEDA----RIAVQAGAAGIIVSNH 234 (349)
Q Consensus 165 r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-----~~~~~a----~~a~~~G~d~I~v~~~ 234 (349)
+. . .+.++ .++|+.+++..+- ..+|.+ ++.++. +.+.++|+|+|..|..
T Consensus 121 ----lk------------~----g~~~~v~~eI~~v~~a~~~-~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTSTG 179 (239)
T 3ngj_A 121 ----VK------------A----KKYDDVEKDVKAVVDASGK-ALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTSTG 179 (239)
T ss_dssp ----HH------------T----TCHHHHHHHHHHHHHHHTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCS
T ss_pred ----hc------------c----ccHHHHHHHHHHHHHHhcC-CceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECCCC
Confidence 00 0 12233 5678888888753 256765 455554 4458999999999742
Q ss_pred CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 235 GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 235 gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
- ..+..+++.+..+++.++.+++|.++||||+.+|+++++++||+.++..+
T Consensus 180 f----~~ggAt~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~aGA~riGtS~ 230 (239)
T 3ngj_A 180 F----GTHGATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINNGASRIGASA 230 (239)
T ss_dssp S----SSCCCCHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHHTTEEEEEESC
T ss_pred C----CCCCCCHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHHhcccceeccc
Confidence 1 12334566666666667678999999999999999999999999877655
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=5.2e-08 Score=88.43 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.+.|++.|.+++.+..+...++ .++.+.++++.+ ++||++.|||++++|+.+++++||++|++|++++.
T Consensus 155 ~e~~~~~~~~G~~~i~~~~~~~~g~~~g~-~~~~i~~l~~~~--~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~ 230 (252)
T 1ka9_F 155 VEWAVKGVELGAGEILLTSMDRDGTKEGY-DLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF 230 (252)
T ss_dssp HHHHHHHHHHTCCEEEEEETTTTTTCSCC-CHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHcCCCEEEEecccCCCCcCCC-CHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHc
Confidence 57789999999999988643221122233 588899988877 79999999999999999999999999999999985
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=9.5e-08 Score=86.17 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.+.|+|.|.+.+........+ ..++.+.++++.+ ++||+++|||++.+|+.+++++||++|++|++++.
T Consensus 157 ~e~~~~~~~~G~d~i~~~~~~~~g~~~~-~~~~~i~~l~~~~--~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~ 232 (253)
T 1h5y_A 157 VKWAKEVEELGAGEILLTSIDRDGTGLG-YDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 (253)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTTCSC-CCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHhCCCCEEEEecccCCCCcCc-CCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence 4778999999999999864321111112 3577888888776 79999999999999999999999999999999975
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-07 Score=87.25 Aligned_cols=159 Identities=19% Similarity=0.206 Sum_probs=99.7
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCC---Cchh-----HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcC
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRL---GRRE-----ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITK 204 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~---g~r~-----~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~ 204 (349)
+.+.+.+.++.+.+. +|+|+|.+....+ |.-. +-+.++ ...+. .+.++++|+..+
T Consensus 28 ~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G---------------~~~~~~~~~v~~ir~~~~ 91 (271)
T 1ujp_A 28 SREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKG---------------MSVQGALELVREVRALTE 91 (271)
T ss_dssp CHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTT---------------CCHHHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcC---------------CCHHHHHHHHHHHHhcCC
Confidence 446677888888888 9999986532100 0000 001111 11122 577999999889
Q ss_pred CcEEEEEecC-------HHHHHHHHHcCCCEEEEecC---------------CC---------CC---------------
Q 018919 205 LPILVKGVLT-------AEDARIAVQAGAAGIIVSNH---------------GA---------RQ--------------- 238 (349)
Q Consensus 205 ~pv~vK~v~~-------~~~a~~a~~~G~d~I~v~~~---------------gg---------~~--------------- 238 (349)
+|+++-+..+ .+.++.|.++|+|++++-.- |- ..
T Consensus 92 ~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfi 171 (271)
T 1ujp_A 92 KPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFV 171 (271)
T ss_dssp SCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCE
T ss_pred CCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCE
Confidence 9998743322 25678899999998887421 10 00
Q ss_pred ----C--CCch------hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHH
Q 018919 239 ----L--DYVP------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 306 (349)
Q Consensus 239 ----~--~~~~------~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~ 306 (349)
. .+|. ...+.+.++++.. ++||++.|||++++++.++ .|||+|.||+++...... + + .
T Consensus 172 y~vs~~G~TG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~~~~-~-~----~ 241 (271)
T 1ujp_A 172 YAVSVTGVTGMRERLPEEVKDLVRRIKART--ALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALEE-G-R----S 241 (271)
T ss_dssp EEECC------------CCHHHHHHHHTTC--CSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHHHT-T-C----C
T ss_pred EEEecCcccCCCCCCCccHHHHHHHHHhhc--CCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhcccch-H-H----H
Confidence 0 0011 1135666666554 7999999999999999885 999999999999976432 1 1 3
Q ss_pred HHHHHHHHHHHH
Q 018919 307 LEMLREEFELAM 318 (349)
Q Consensus 307 l~~l~~el~~~m 318 (349)
+..+.++++..+
T Consensus 242 ~~~fv~~l~~~~ 253 (271)
T 1ujp_A 242 LAPLLQEIRQGL 253 (271)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-07 Score=85.07 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.+.|++.|.+++........+ ..++.+.++++.+ ++|||+.|||++++|+.+++.+||++|++|++++.
T Consensus 159 ~e~~~~~~~~G~~~i~~t~~~~~g~~~g-~~~~~i~~l~~~~--~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~ 234 (266)
T 2w6r_A 159 RDWVVEVEKRGAGEILLTSIDRDGTKSG-YDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 234 (266)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTTCSC-CCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC-
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCC-CCHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHc
Confidence 4667999999999999864321111123 3578888887766 79999999999999999999999999999999875
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.6e-07 Score=80.86 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=108.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh--cCCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI--TKLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~--~~~pv~v 209 (349)
.|.....+.+++++++|++.+-+++--- .| +| +-.+ .+.++++|+. .++|+-+
T Consensus 14 ~D~~~l~~~i~~l~~~g~d~~h~DVmDg-----------~F-vp------------n~~~G~~~v~~ir~~~~~~~~~dv 69 (228)
T 3ovp_A 14 SDLANLGAECLRMLDSGADYLHLDVMDG-----------HF-VP------------NITFGHPVVESLRKQLGQDPFFDM 69 (228)
T ss_dssp SCGGGHHHHHHHHHHTTCSCEEEEEEBS-----------SS-SS------------CBCBCHHHHHHHHHHHCSSSCEEE
T ss_pred CCchhHHHHHHHHHHcCCCEEEEEecCC-----------Cc-Cc------------ccccCHHHHHHHHHhhCCCCcEEE
Confidence 5667778899999999999887655210 11 12 1123 5789999988 4789888
Q ss_pred EEe-cCH-HHHHHHHHcCCCEEEEecCCC------------------------CC----------CC-----------C-
Q 018919 210 KGV-LTA-EDARIAVQAGAAGIIVSNHGA------------------------RQ----------LD-----------Y- 241 (349)
Q Consensus 210 K~v-~~~-~~a~~a~~~G~d~I~v~~~gg------------------------~~----------~~-----------~- 241 (349)
+.. .++ ..++.+.++|+|.|++..... +. .| +
T Consensus 70 hLmv~~p~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~msv~pGf~G 149 (228)
T 3ovp_A 70 HMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGG 149 (228)
T ss_dssp EEECSCGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEESSCTTTCS
T ss_pred EEEeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEeeecCCCCC
Confidence 764 444 346778899999999963211 00 00 1
Q ss_pred ---chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 018919 242 ---VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 318 (349)
Q Consensus 242 ---~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m 318 (349)
.+..++-+.++++.. .+++|.++|||+ .+.+.++.++|||.+.+||+++.+ +...+.++.++++++...
T Consensus 150 q~f~~~~l~ki~~lr~~~-~~~~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a------~dp~~~~~~l~~~~~~~~ 221 (228)
T 3ovp_A 150 QKFMEDMMPKVHWLRTQF-PSLDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRS------EDPRSVINLLRNVCSEAA 221 (228)
T ss_dssp CCCCGGGHHHHHHHHHHC-TTCEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTC------SCHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhc-CCCCEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCC------CCHHHHHHHHHHHHHHHH
Confidence 134566677776654 368999999995 799999999999999999987631 223456677777777766
Q ss_pred HHc
Q 018919 319 ALS 321 (349)
Q Consensus 319 ~~~ 321 (349)
...
T Consensus 222 ~~~ 224 (228)
T 3ovp_A 222 QKR 224 (228)
T ss_dssp HHC
T ss_pred hhc
Confidence 543
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.1e-08 Score=88.20 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCEEEEecC--CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh---CCCEEEEch
Q 018919 215 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGR 289 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~---GA~~V~ig~ 289 (349)
.+.++.+.+.|++.|.+++. ++. ..+ ..++.+.++++.+ ++||+++|||++++|+.+++++ ||++|++|+
T Consensus 149 ~e~~~~~~~~G~~~i~~~~~~~~~~--~~g-~~~~~~~~i~~~~--~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~ 223 (244)
T 1vzw_A 149 YETLDRLNKEGCARYVVTDIAKDGT--LQG-PNLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGK 223 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEEC---------C-CCHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECH
T ss_pred HHHHHHHHhCCCCEEEEeccCcccc--cCC-CCHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeH
Confidence 46679999999999988652 221 112 3678888888776 7999999999999999999998 999999999
Q ss_pred HHHH
Q 018919 290 PVVY 293 (349)
Q Consensus 290 ~~l~ 293 (349)
+++.
T Consensus 224 al~~ 227 (244)
T 1vzw_A 224 ALYA 227 (244)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9984
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=98.69 E-value=9.3e-08 Score=96.82 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~~V~ig~~~l~ 293 (349)
.+.++.+.++|++.|++.+...-+...| +.++.+.++++.+ ++|||++|||++.+|+.+++. +||++|++||+|+.
T Consensus 455 ~e~a~~~~~~Ga~~il~t~~~~dG~~~G-~d~~li~~l~~~~--~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~ 531 (555)
T 1jvn_A 455 WELTRACEALGAGEILLNCIDKDGSNSG-YDLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 531 (555)
T ss_dssp HHHHHHHHHTTCCEEEECCGGGTTTCSC-CCHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHhC--CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence 5889999999999999854211112234 3799999999887 899999999999999999998 89999999999975
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-07 Score=86.13 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=61.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh-----C-CCEEEEch
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-ASGIFIGR 289 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~-----G-A~~V~ig~ 289 (349)
+.++.+.++|++.|.+++....+...+ +.++.+.++++.+ ++|||+.|||++++|+.+++++ | |++|++|+
T Consensus 148 e~~~~~~~~G~~~i~~t~~~~~g~~~g-~~~~~i~~l~~~~--~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgs 224 (241)
T 1qo2_A 148 SLLKRLKEYGLEEIVHTEIEKDGTLQE-HDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGR 224 (241)
T ss_dssp HHHHHHHTTTCCEEEEEETTHHHHTCC-CCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECH
T ss_pred HHHHHHHhCCCCEEEEEeecccccCCc-CCHHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeH
Confidence 557889999999999976421111123 3688899998887 8999999999999999999998 9 99999999
Q ss_pred HHHH
Q 018919 290 PVVY 293 (349)
Q Consensus 290 ~~l~ 293 (349)
+++.
T Consensus 225 al~~ 228 (241)
T 1qo2_A 225 AFLE 228 (241)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9985
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-08 Score=96.42 Aligned_cols=147 Identities=19% Similarity=0.106 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC--cCcccccCCCC-CCch-HHHHHHHHHhcC-CcEEEEEe
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP--FLTLKNFQGLD-LGKM-DEDVKWLQTITK-LPILVKGV 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~--~~~~~~~~~~~-~~~~-~~~i~~i~~~~~-~pv~vK~v 212 (349)
..+.+++++++|+|+|+||..| |+ +-++|..|. .-+..-+.++. ...| .+.++.+|+.++ -||.+|+.
T Consensus 170 ~~~aa~~a~~aGfdgveih~~~---GY----Ll~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~ 242 (407)
T 3tjl_A 170 YTNAAQKAMDAGFDYIELHAAH---GY----LLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRIS 242 (407)
T ss_dssp HHHHHHHHHHTTCSEEEEECCT---TS----HHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEEC
T ss_pred HHHHHHHHHHhCCCeEEECCcc---ch----HHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3445666788999999999877 11 112232221 00000010111 1235 678999999885 48999986
Q ss_pred c-----------C--------HHHHHHH---HHcC--CCEEEEecCCC-CCCCCchh-hHHHHHHHHHHhcCCCcEEEec
Q 018919 213 L-----------T--------AEDARIA---VQAG--AAGIIVSNHGA-RQLDYVPA-TIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 213 ~-----------~--------~~~a~~a---~~~G--~d~I~v~~~gg-~~~~~~~~-~~~~l~~i~~~~~~~ipvia~G 266 (349)
. + .+.++.+ .+.| +|+|.++.... .+.+..+. .+..+..+++.+ ++|||++|
T Consensus 243 ~~~~~~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~PvI~~G 320 (407)
T 3tjl_A 243 PWATFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIW--KGVILKAG 320 (407)
T ss_dssp TTCCGGGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTEECCGGGCCCCSHHHHHHC--CSEEEEES
T ss_pred cccccCCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCCcCCccchhHHHHHHHHHh--CCCEEecC
Confidence 3 2 2335677 7789 99999973211 11111111 112344556665 68999999
Q ss_pred CCCCHHHHHHHHHh---C-CCEEEEchHHHH
Q 018919 267 GVRRGTDVFKALAL---G-ASGIFIGRPVVY 293 (349)
Q Consensus 267 GI~~~~dv~kal~~---G-A~~V~ig~~~l~ 293 (349)
||.+.+|+.+++.. | ||+|++||+++.
T Consensus 321 gi~~~~dA~~~i~~~~~g~aDlVa~GR~~ia 351 (407)
T 3tjl_A 321 NYSYDAPEFKTLKEDIADKRTLVGFSRYFTS 351 (407)
T ss_dssp CGGGGTTTTHHHHHHHTTSSEEEECSHHHHH
T ss_pred CCCCHHHHHHHHHhhccCCCeEEEeChhhhh
Confidence 99999988888776 4 999999999985
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-06 Score=77.68 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 018919 195 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 274 (349)
Q Consensus 195 ~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv 274 (349)
.++..+ ..++|++.. +.|++++..+.+.|+|+|.++. . ..-+| .+.++.++..++ ++|+++.|||. .+++
T Consensus 96 v~~~~~-~~g~~~i~G-~~t~~e~~~A~~~Gad~v~~fp--a-~~~gG---~~~lk~l~~~~~-~ipvvaiGGI~-~~n~ 165 (207)
T 2yw3_A 96 VAALAQ-ARGVPYLPG-VLTPTEVERALALGLSALKFFP--A-EPFQG---VRVLRAYAEVFP-EVRFLPTGGIK-EEHL 165 (207)
T ss_dssp HHHHHH-HHTCCEEEE-ECSHHHHHHHHHTTCCEEEETT--T-TTTTH---HHHHHHHHHHCT-TCEEEEBSSCC-GGGH
T ss_pred HHHHHH-HhCCCEEec-CCCHHHHHHHHHCCCCEEEEec--C-ccccC---HHHHHHHHhhCC-CCcEEEeCCCC-HHHH
Confidence 344444 478898874 8899999999999999999943 1 11113 355666666553 79999999997 6999
Q ss_pred HHHHHhCCCEEEEchHHHH
Q 018919 275 FKALALGASGIFIGRPVVY 293 (349)
Q Consensus 275 ~kal~~GA~~V~ig~~~l~ 293 (349)
.+++++||++|.+|++++.
T Consensus 166 ~~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 166 PHYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp HHHHTCSSBSCEEESGGGS
T ss_pred HHHHhCCCcEEEEehhhhC
Confidence 9999999999999998763
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-07 Score=82.88 Aligned_cols=170 Identities=20% Similarity=0.189 Sum_probs=105.3
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEE-E-ee--cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCch
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQ-L-YV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Q-l-~~--~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r 165 (349)
..+.+.|.++|+..+.- .+.-+........ +....- + |+ ....+.-...++.+.+.|++.|.+.+|...
T Consensus 32 ~~lc~eA~~~~~~aVcV--~p~~v~~a~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Ai~~GAdEIDmVinig~---- 105 (231)
T 3ndo_A 32 TALVDEAADLGVFAVCV--SPPLVSVAAGVAPSGLAIAAVAGFPSGKHVPGIKATEAELAVAAGATEIDMVIDVGA---- 105 (231)
T ss_dssp HHHHHHHHHHTCSEEEE--CGGGHHHHHHHCCTTCEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHH----
T ss_pred HHHHHHHHHhCCcEEEE--CHHHHHHHHHhcCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeehHh----
Confidence 36778888888775431 1112222221111 111111 1 22 123344445677788899999988776310
Q ss_pred hHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-----c----CHHH----HHHHHHcCCCEEEE
Q 018919 166 EADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-----L----TAED----ARIAVQAGAAGIIV 231 (349)
Q Consensus 166 ~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-----~----~~~~----a~~a~~~G~d~I~v 231 (349)
+. . .+.+. .++|+.+++..+ ...+|.+ + +.++ ++.+.++|+|+|..
T Consensus 106 ---lk------------~----g~~~~v~~ei~~v~~a~~-~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKT 165 (231)
T 3ndo_A 106 ---AL------------A----GDLDAVSADITAVRKAVR-AATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKT 165 (231)
T ss_dssp ---HH------------T----TCHHHHHHHHHHHHHHTT-TSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEEC
T ss_pred ---hh------------c----ccHHHHHHHHHHHHHHcc-CCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEc
Confidence 00 0 02222 567888888875 2345876 4 5544 45678999999998
Q ss_pred ecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 232 SNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 232 ~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
|..-+ ..+..+.+.+..+++.++.+++|-++||||+.+|+.+++++||+.++..+
T Consensus 166 STGf~---~~~gAt~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~aGa~RiGtS~ 220 (231)
T 3ndo_A 166 STGFH---PSGGASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGATRLGLSG 220 (231)
T ss_dssp CCSCC---TTCSCCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHTTCSEEEESS
T ss_pred CCCCC---CCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhcchhcccch
Confidence 74211 02335667777777777778999999999999999999999999665544
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-07 Score=83.50 Aligned_cols=169 Identities=18% Similarity=0.112 Sum_probs=104.4
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhC--CCceEEEE--ee--cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTG--PGIRFFQL--YV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~--~~~~~~Ql--~~--~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~ 164 (349)
..+.+.|.+.|+..+.- .+.-+....+.. .+....-+ |+ ....+.-...++.+.+.|++.|.+.++...
T Consensus 62 ~~lc~eA~~~~~aaVCV--~p~~V~~a~~~L~gs~v~v~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~--- 136 (260)
T 3r12_A 62 KKLCLEARENRFHGVCV--NPCYVKLAREELEGTDVKVVTVVGFPLGANETRTKAHEAIFAVESGADEIDMVINVGM--- 136 (260)
T ss_dssp HHHHHHHHHTTCSEEEE--CGGGHHHHHHHHTTSCCEEEEEESTTTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHH---
T ss_pred HHHHHHHHhcCCcEEEE--CHHHHHHHHHHhcCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeehhh---
Confidence 36788888888775431 111222222211 11111111 22 123344445677788889999987775310
Q ss_pred hhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-----cCHHH----HHHHHHcCCCEEEEecC
Q 018919 165 READIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 165 r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-----~~~~~----a~~a~~~G~d~I~v~~~ 234 (349)
+. . .+.+. .++|+.+++..+ ...+|.+ ++.++ ++.+.++|+|+|..|..
T Consensus 137 ----lk------------~----g~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTG 195 (260)
T 3r12_A 137 ----LK------------A----KEWEYVYEDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTG 195 (260)
T ss_dssp ----HH------------T----TCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCS
T ss_pred ----hc------------c----ccHHHHHHHHHHHHHhcC-CCcEEEEEeCCCCCHHHHHHHHHHHHHhCcCEEEcCCC
Confidence 00 0 01222 567888888764 3345876 34443 46678999999999842
Q ss_pred CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 235 GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 235 gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
- ..+.++.+.+..+++.++++++|-++|||++.+|+.+++++||+-++..+
T Consensus 196 -f---~~~GAT~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~aGA~RiGtS~ 246 (260)
T 3r12_A 196 -F---GTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSS 246 (260)
T ss_dssp -S---SSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred -C---CCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeecch
Confidence 1 12334666666667777778999999999999999999999999765544
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.4e-07 Score=80.88 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=68.0
Q ss_pred HHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec---CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 196 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
+..+++..+. ++++. +.++++++.+.+.|+|+|.++. .+..+....+..++.+.++++.++ ++||++.|||. +
T Consensus 107 ~~~~~~~~g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~-~~pvia~GGI~-~ 183 (227)
T 2tps_A 107 AKEVRAAIGD-MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGI-SIPIVGIGGIT-I 183 (227)
T ss_dssp HHHHHHHHTT-SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTC-CCCEEEESSCC-T
T ss_pred HHHHHHhcCC-cEEEEecCCHHHHHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCC-CCCEEEEcCCC-H
Confidence 3444554554 34433 3678889999999999999842 111111122345677888877662 39999999999 9
Q ss_pred HHHHHHHHhCCCEEEEchHHHH
Q 018919 272 TDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+++.+++++||++|.+|+.++.
T Consensus 184 ~nv~~~~~~Ga~gv~vgs~i~~ 205 (227)
T 2tps_A 184 DNAAPVIQAGADGVSMISAISQ 205 (227)
T ss_dssp TTSHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHcCCCEEEEhHHhhc
Confidence 9999999999999999999874
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-06 Score=79.17 Aligned_cols=151 Identities=20% Similarity=0.245 Sum_probs=102.6
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK 210 (349)
.|.....+.+++++++|++.+-+++--- .| +| +-.+ .+.++.+|+.+ ++|+-+.
T Consensus 37 aD~~~L~~~i~~l~~~G~d~lHvDVmDg-----------~F-Vp------------nit~G~~~v~~lr~~~p~~~ldvH 92 (246)
T 3inp_A 37 ADLARLGDDVKAVLAAGADNIHFDVMDN-----------HY-VP------------NLTFGPMVLKALRDYGITAGMDVH 92 (246)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBS-----------SS-SS------------CBCCCHHHHHHHHHHTCCSCEEEE
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEecCC-----------Cc-Cc------------chhcCHHHHHHHHHhCCCCeEEEE
Confidence 5667778899999999999887655210 01 12 1123 57899999998 8999887
Q ss_pred Ee-cCH-HHHHHHHHcCCCEEEEecC---------------CC---------CC----------CC-----------Cc-
Q 018919 211 GV-LTA-EDARIAVQAGAAGIIVSNH---------------GA---------RQ----------LD-----------YV- 242 (349)
Q Consensus 211 ~v-~~~-~~a~~a~~~G~d~I~v~~~---------------gg---------~~----------~~-----------~~- 242 (349)
.. .++ ..++.+.++|||.|++... |- +. .| +|
T Consensus 93 Lmv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~PGfgGQ 172 (246)
T 3inp_A 93 LMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQ 172 (246)
T ss_dssp EECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCTTC--C
T ss_pred EeeCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecCCCCCc
Confidence 75 444 4577889999999999621 11 00 00 12
Q ss_pred ---hhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 243 ---PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
+.+++-+.++++..+ .+++|.++|||+ .+.+.++.++|||.+.+||+++.+ +...+.++.+++.+
T Consensus 173 ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a------~dp~~~i~~l~~~i 243 (246)
T 3inp_A 173 KFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNS------DSYKQTIDKMRDEL 243 (246)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHTS------SCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhCC------CCHHHHHHHHHHHH
Confidence 445666777666542 258999999999 588989999999999999987631 22234455555544
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=77.68 Aligned_cols=151 Identities=17% Similarity=0.202 Sum_probs=93.5
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEec-CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEE
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILV 209 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~-d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~v 209 (349)
..|.....+.++.+.+.|++.+.+.+ |.+.. . .-.+ .+.++++++.++.|+.+
T Consensus 12 a~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~--------------~-----------~~~~g~~~i~~i~~~~~~~~~v 66 (220)
T 2fli_A 12 AADYANFASELARIEETDAEYVHIDIMDGQFV--------------P-----------NISFGADVVASMRKHSKLVFDC 66 (220)
T ss_dssp GSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSS--------------S-----------CBCBCHHHHHHHHTTCCSEEEE
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC--------------C-----------ccccCHHHHHHHHHhCCCCEEE
Confidence 45777778889999999999876553 32200 0 0112 46677777766667666
Q ss_pred EEe-cCH-HHHHHHHHcCCCEEEEecCCC------------------------C-------------------------C
Q 018919 210 KGV-LTA-EDARIAVQAGAAGIIVSNHGA------------------------R-------------------------Q 238 (349)
Q Consensus 210 K~v-~~~-~~a~~a~~~G~d~I~v~~~gg------------------------~-------------------------~ 238 (349)
.+. .++ +.++.+.++|+|+|+++.... + .
T Consensus 67 ~l~v~d~~~~i~~~~~~gad~v~vh~~~~~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~g 146 (220)
T 2fli_A 67 HLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGG 146 (220)
T ss_dssp EEESSSGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSS
T ss_pred EEeecCHHHHHHHHHHcCCCEEEEccCccccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEECCCCcc
Confidence 554 333 245777777788777742110 0 0
Q ss_pred CCCchhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 239 LDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 239 ~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
....+..++.+.++++.+. .++|++++|||+ ++++.+++++|||+|.+||+++.+ +...+.++.+++++
T Consensus 147 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~~------~d~~~a~~~~~~~~ 218 (220)
T 2fli_A 147 QAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKA------SDLVSQVQTLRTAL 218 (220)
T ss_dssp CCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTS------SCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEEChHHhCC------CCHHHHHHHHHHHh
Confidence 0011223445555555442 268999999999 799999999999999999998742 12344555555543
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-07 Score=80.42 Aligned_cols=167 Identities=21% Similarity=0.203 Sum_probs=103.3
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC--Cce--EEEEeec--CChhHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIR--FFQLYVY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~--~~~--~~Ql~~~--~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~ 164 (349)
..+.+.+.++|+..+.- .+.-++...+... +.. .+--|+. ...+.-...++.+.+.|++.|.+.++...
T Consensus 22 ~~l~~~a~~~~~~aVcv--~p~~v~~~~~~l~~~~v~v~~vigFP~G~~~~~~k~~e~~~Ai~~GAdevd~vinig~--- 96 (220)
T 1ub3_A 22 AKAAEEALEYGFYGLCI--PPSYVAWVRARYPHAPFRLVTVVGFPLGYQEKEVKALEAALACARGADEVDMVLHLGR--- 96 (220)
T ss_dssp HHHHHHHHHHTCSEEEC--CGGGHHHHHHHCTTCSSEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHH---
T ss_pred HHHHHHHHHhCCCEEEE--CHHHHHHHHHHhCCCCceEEEEecCCCCCCchHHHHHHHHHHHHcCCCEEEecccchh---
Confidence 46788888888765542 1212332222221 121 1112322 23344456677888899999988775310
Q ss_pred hhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-----cCHHH----HHHHHHcCCCEEEEecC
Q 018919 165 READIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 165 r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-----~~~~~----a~~a~~~G~d~I~v~~~ 234 (349)
+. . .+.+. .++++.+++..+-+ .+|.+ ++.+. ++.+.++|+|+|..|..
T Consensus 97 ----~~------------~----g~~~~v~~ei~~v~~a~~~~-~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKTsTG 155 (220)
T 1ub3_A 97 ----AK------------A----GDLDYLEAEVRAVREAVPQA-VLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTG 155 (220)
T ss_dssp ----HH------------T----TCHHHHHHHHHHHHHHSTTS-EEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCS
T ss_pred ----hh------------C----CCHHHHHHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 00 0 01222 56788888877544 56755 35543 56788999999998742
Q ss_pred CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 235 GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 235 gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
. ..+..+.+.+..+++.++.++||-++|||++.+|+++++.+||+-++.
T Consensus 156 -f---~~~gat~~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i~aGa~RiG~ 204 (220)
T 1ub3_A 156 -F---GPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGT 204 (220)
T ss_dssp -S---SSCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred -C---CCCCCCHHHHHHHHHhhCCCCeEEEECCCCCHHHHHHHHHCCCcccch
Confidence 1 112345555555666566689999999999999999999999994443
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-06 Score=77.15 Aligned_cols=79 Identities=24% Similarity=0.285 Sum_probs=62.2
Q ss_pred ecCHHHHHHHHHcCCCEEEEecC--CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+.+++++..+.+.|+|+|.+++- ++......+..++.+.++++.. ++||++.|||. ++++.+++.+||++|.+|+
T Consensus 115 ~~t~~e~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs 191 (215)
T 1xi3_A 115 VYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGIN-KDNAREVLKTGVDGIAVIS 191 (215)
T ss_dssp ESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSCC-TTTHHHHHTTTCSEEEESH
T ss_pred cCCHHHHHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC--CCCEEEECCcC-HHHHHHHHHcCCCEEEEhH
Confidence 46788898999999999998651 1111112344678888887766 79999999999 9999999999999999999
Q ss_pred HHHH
Q 018919 290 PVVY 293 (349)
Q Consensus 290 ~~l~ 293 (349)
.++.
T Consensus 192 ~i~~ 195 (215)
T 1xi3_A 192 AVMG 195 (215)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9874
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=98.57 E-value=4.9e-06 Score=76.06 Aligned_cols=213 Identities=15% Similarity=0.178 Sum_probs=125.1
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCC---------CC----C--------H---HHHHhhCC-Cce
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS---------TS----S--------V---EEVASTGP-GIR 125 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~---------~~----~--------~---e~i~~~~~-~~~ 125 (349)
..||+-+..+ .+ -.|+.+.+.|+.+++--.+ +. + + +|+..... -|.
T Consensus 27 ~~~iig~gaG-tG--------lsAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e~~~evlp~v~~iPV 97 (286)
T 2p10_A 27 GEPIIGGGAG-TG--------LSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHTPV 97 (286)
T ss_dssp TCCEEEEEES-SH--------HHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSSCE
T ss_pred CCceEEEecc-cc--------hhhHHHHhCCCCEEEEeccchhhhcCccchhhhccccCHHHHHHHHHHhhhccCCCCCE
Confidence 3587777743 23 4789999999998873111 10 0 1 13333333 568
Q ss_pred EEEEeecCChh-HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc
Q 018919 126 FFQLYVYKDRN-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT 203 (349)
Q Consensus 126 ~~Ql~~~~~~~-~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~ 203 (349)
+.|+.. .||. .+...++.++++|+.++ +|. |..|.-.-.+|+.+. ..+++ -+. .+.|+..++.
T Consensus 98 ~Agv~~-~DP~~~~g~~Le~lk~~Gf~Gv-~N~--ptvglidG~fr~~LE-E~gm~---------~~~eve~I~~A~~~- 162 (286)
T 2p10_A 98 LAGVNG-TDPFMVMSTFLRELKEIGFAGV-QNF--PTVGLIDGLFRQNLE-ETGMS---------YAQEVEMIAEAHKL- 162 (286)
T ss_dssp EEEECT-TCTTCCHHHHHHHHHHHTCCEE-EEC--SCGGGCCHHHHHHHH-HTTCC---------HHHHHHHHHHHHHT-
T ss_pred EEEECC-cCCCcCHHHHHHHHHHhCCceE-EEC--CCcccccchhhhhHh-hcCCC---------HHHHHHHHHHHHHC-
Confidence 899654 5654 46677899999999998 554 432322211221110 00000 011 2335554443
Q ss_pred CCcEEEEEecCHHHHHHHHHcCCCEEEEecC---CCCC-CCC--chhh-HHHHHHHHH---HhcCCCcEEEec-CCCCHH
Q 018919 204 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH---GARQ-LDY--VPAT-IMALEEVVK---ATQGRIPVFLDG-GVRRGT 272 (349)
Q Consensus 204 ~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~---gg~~-~~~--~~~~-~~~l~~i~~---~~~~~ipvia~G-GI~~~~ 272 (349)
++ +.+--+.++++|+.+.++|+|.|++.-. |+.- ... .... .+.+.++.+ .++.++.|++-| ||.+++
T Consensus 163 gL-~Ti~~v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpe 241 (286)
T 2p10_A 163 DL-LTTPYVFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPE 241 (286)
T ss_dssp TC-EECCEECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHH
T ss_pred CC-eEEEecCCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHH
Confidence 43 2222468999999999999999999532 1210 011 1111 234444444 344567777666 999999
Q ss_pred HHHHHHHh--CCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 273 DVFKALAL--GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 273 dv~kal~~--GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
|+.+++.+ |++++..++.+... + ++..+..+.++++
T Consensus 242 Dv~~~l~~t~G~~G~~gASsier~------p-~e~ai~~~~~~fk 279 (286)
T 2p10_A 242 DARFILDSCQGCHGFYGASSMERL------P-AEEAIRSQTLAFK 279 (286)
T ss_dssp HHHHHHHHCTTCCEEEESHHHHHH------H-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccEEEeehhhhcC------C-HHHHHHHHHHHHH
Confidence 99999999 99999999998864 2 4555666665554
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.5e-07 Score=81.48 Aligned_cols=183 Identities=17% Similarity=0.188 Sum_probs=108.6
Q ss_pred hhhHHHHHHHHHcCCeEE-ecC-----CCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCC
Q 018919 88 EGEYATARAASAAGTIMT-LSS-----WSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (349)
Q Consensus 88 ~~~~~la~aa~~~G~~~~-~~~-----~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p 160 (349)
+....+++.. +.|+..+ ++. ++...++++++..+ .+.++-++....+. ..++.+.++|++.+.++...+
T Consensus 19 ~~~~~~~~~~-~~~vd~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~---~~~~~~~~aGad~i~vh~~~~ 94 (218)
T 3jr2_A 19 TDAVAVASNV-ASYVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGA---ILSRMAFEAGADWITVSAAAH 94 (218)
T ss_dssp HHHHHHHHHH-GGGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHH---HHHHHHHHHTCSEEEEETTSC
T ss_pred HHHHHHHHHh-cCCceEEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHH---HHHHHHHhcCCCEEEEecCCC
Confidence 3445666664 4455544 331 12233566666644 34444444432232 356888899999998875321
Q ss_pred CCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEE--EecCHHHHHHHHHcCCCEEEEecC--C
Q 018919 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVK--GVLTAEDARIAVQAGAAGIIVSNH--G 235 (349)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK--~v~~~~~a~~a~~~G~d~I~v~~~--g 235 (349)
.+. .+.++.+++ .+++.++. ++.|+++++.+.+.|+|.+++... +
T Consensus 95 -----------------------------~~~~~~~~~~~~~-~g~~~~~d~l~~~T~~~~~~~~~~g~d~v~~~~~~~~ 144 (218)
T 3jr2_A 95 -----------------------------IATIAACKKVADE-LNGEIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDA 144 (218)
T ss_dssp -----------------------------HHHHHHHHHHHHH-HTCEEEEECCSSCCHHHHHHHHHTTCCEEEEECCHHH
T ss_pred -----------------------------HHHHHHHHHHHHH-hCCccceeeeecCCHHHHHHHHHcCccceeeeecccc
Confidence 011 233555554 47766532 346788899999999999876311 1
Q ss_pred CC-CCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 236 AR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 236 g~-~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
+. .....+..++.++++. +.++|++++||| +++.+.+++++|||+|.+||+++.+ +...+.. .+++++
T Consensus 145 ~~~g~~~~~~~l~~i~~~~---~~~~pi~v~GGI-~~~~~~~~~~aGAd~vvvGsaI~~a------~dp~~a~-~l~~~~ 213 (218)
T 3jr2_A 145 ELAGIGWTTDDLDKMRQLS---ALGIELSITGGI-VPEDIYLFEGIKTKTFIAGRALAGA------EGQQTAA-ALREQI 213 (218)
T ss_dssp HHHTCCSCHHHHHHHHHHH---HTTCEEEEESSC-CGGGGGGGTTSCEEEEEESGGGSHH------HHHHHHH-HHHHHH
T ss_pred ccCCCcCCHHHHHHHHHHh---CCCCCEEEECCC-CHHHHHHHHHcCCCEEEEchhhcCC------CCHHHHH-HHHHHH
Confidence 10 0112333344444443 237999999999 5899999999999999999998753 2233344 555555
Q ss_pred H
Q 018919 315 E 315 (349)
Q Consensus 315 ~ 315 (349)
+
T Consensus 214 ~ 214 (218)
T 3jr2_A 214 D 214 (218)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-06 Score=79.14 Aligned_cols=121 Identities=13% Similarity=0.103 Sum_probs=91.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHH
Q 018919 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARI 220 (349)
Q Consensus 141 ~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~ 220 (349)
.+..+...|+|+|-+-+.+ .++.....+..+....++-+++ .+-+.++.++
T Consensus 118 QI~eAr~~GADaILLI~a~----------------------------L~~~~l~~l~~~A~~lGl~~Lv-EVh~~~El~r 168 (258)
T 4a29_A 118 QIDDAYNLGADTVLLIVKI----------------------------LTERELESLLEYARSYGMEPLI-LINDENDLDI 168 (258)
T ss_dssp HHHHHHHHTCSEEEEEGGG----------------------------SCHHHHHHHHHHHHHTTCCCEE-EESSHHHHHH
T ss_pred HHHHHHHcCCCeeehHHhh----------------------------cCHHHHHHHHHHHHHHhHHHHH-hcchHHHHHH
Confidence 4566788899999775532 1111134444555567887776 5789999999
Q ss_pred HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 221 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 221 a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.++|++.|-|.|..-+ +-..+++...++...++.++.+|+.+||++++|+.++...|+++|.||.+++.
T Consensus 169 Al~~~a~iIGINNRnL~---tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr 238 (258)
T 4a29_A 169 ALRIGARFIGIMSRDFE---TGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMR 238 (258)
T ss_dssp HHHTTCSEEEECSBCTT---TCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HhcCCCcEEEEeCCCcc---ccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 99999999988665332 32334555556666777789999999999999999999999999999999997
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-06 Score=77.06 Aligned_cols=169 Identities=14% Similarity=0.117 Sum_probs=102.6
Q ss_pred hHHHHHHHHHcCCeEE-ecC----C---CCCCHHH---HHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecC
Q 018919 90 EYATARAASAAGTIMT-LSS----W---STSSVEE---VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~-~~~----~---~~~~~e~---i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d 158 (349)
-...++++.+.|+.++ +.. + ....++. +++..+.+..+-+|.+ ++ .+.++.+.++|++.+.+|..
T Consensus 25 ~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v~l~vn-d~---~~~v~~~~~~Gad~v~vh~~ 100 (230)
T 1rpx_A 25 LGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIV-EP---DQRVPDFIKAGADIVSVHCE 100 (230)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESS-SH---HHHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhccCCcEEEEEEec-CH---HHHHHHHHHcCCCEEEEEec
Confidence 3466778888886533 221 1 1223443 3333333556777763 43 35677888899999988865
Q ss_pred --CCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecC-
Q 018919 159 --TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH- 234 (349)
Q Consensus 159 --~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~- 234 (349)
.+ +...+.++.+++. ++.+++-.. .++.+.......++|.|.+...
T Consensus 101 ~~~~-----------------------------~~~~~~~~~~~~~-g~~ig~~~~p~t~~e~~~~~~~~~d~vl~~~~~ 150 (230)
T 1rpx_A 101 QSST-----------------------------IHLHRTINQIKSL-GAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVN 150 (230)
T ss_dssp TTTC-----------------------------SCHHHHHHHHHHT-TSEEEEEECTTCCGGGGTTTTTTCSEEEEESSC
T ss_pred Cccc-----------------------------hhHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHhhCCEEEEEEEc
Confidence 31 0113456666653 665544322 2344444445578998865432
Q ss_pred -CCCCCCCchhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 235 -GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 235 -gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
|.......+..++.+.++++.++ .++|++++|||+ ++++.+++++|||+|.+||+++.
T Consensus 151 pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~ 212 (230)
T 1rpx_A 151 PGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 212 (230)
T ss_dssp TTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred CCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhC
Confidence 22111222334555666665542 268999999999 79998999999999999999874
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=78.60 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
.+.++..++ .+.|+++ ++.|++++..+.+.|+|+|.++. .. .-+| .+.+.+++..++ ++|+++.|||. .+
T Consensus 100 ~~v~~~ar~-~g~~~i~-Gv~t~~e~~~A~~~Gad~vk~Fp--a~-~~gG---~~~lk~l~~~~~-~ipvvaiGGI~-~~ 169 (224)
T 1vhc_A 100 PKIVKLCQD-LNFPITP-GVNNPMAIEIALEMGISAVKFFP--AE-ASGG---VKMIKALLGPYA-QLQIMPTGGIG-LH 169 (224)
T ss_dssp HHHHHHHHH-TTCCEEC-EECSHHHHHHHHHTTCCEEEETT--TT-TTTH---HHHHHHHHTTTT-TCEEEEBSSCC-TT
T ss_pred HHHHHHHHH-hCCCEEe-ccCCHHHHHHHHHCCCCEEEEee--Cc-cccC---HHHHHHHHhhCC-CCeEEEECCcC-HH
Confidence 455677776 7889887 48999999999999999999943 10 0112 456666666553 69999999995 58
Q ss_pred HHHHHHHh-CCCEEEEchHHHH
Q 018919 273 DVFKALAL-GASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~-GA~~V~ig~~~l~ 293 (349)
.+.+.+++ |+++|. |+.++.
T Consensus 170 N~~~~l~agga~~v~-gS~i~~ 190 (224)
T 1vhc_A 170 NIRDYLAIPNIVACG-GSWFVE 190 (224)
T ss_dssp THHHHHTSTTBCCEE-ECGGGC
T ss_pred HHHHHHhcCCCEEEE-EchhcC
Confidence 99999998 999999 887764
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=8e-07 Score=80.58 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=61.9
Q ss_pred EecCHHHHHHHHHcCCCEEEEecCCCCCC--CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 211 GVLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 211 ~v~~~~~a~~a~~~G~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+-++++++.+.+.|+|+|.+++-..+.. +..+..++.+.++++....++||++.||| +.+++.+++++||++|.+|
T Consensus 141 S~ht~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~ 219 (243)
T 3o63_A 141 STHDPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVV 219 (243)
T ss_dssp EECSHHHHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEES
T ss_pred eCCCHHHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEe
Confidence 35789999999999999999976322211 11133567777776542237999999999 8999999999999999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
++++.
T Consensus 220 sai~~ 224 (243)
T 3o63_A 220 RAITS 224 (243)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 99874
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.49 E-value=9.7e-07 Score=79.37 Aligned_cols=135 Identities=20% Similarity=0.256 Sum_probs=95.0
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEec-CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~-d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK 210 (349)
.|...+.+.++++++.|++.+.+.+ |.+. +| +..+ .+.++++|+.++.|+.+-
T Consensus 14 ~D~~~l~~~i~~~~~~Gad~ihldi~DG~f-------------vp------------~~~~g~~~v~~lr~~~~~~~~vh 68 (230)
T 1tqj_A 14 ADFSRLGEEIKAVDEAGADWIHVDVMDGRF-------------VP------------NITIGPLIVDAIRPLTKKTLDVH 68 (230)
T ss_dssp SCGGGHHHHHHHHHHTTCSEEEEEEEBSSS-------------SS------------CBCBCHHHHHHHGGGCCSEEEEE
T ss_pred cCHhHHHHHHHHHHHcCCCEEEEEEEecCC-------------Cc------------chhhhHHHHHHHHhhcCCcEEEE
Confidence 5677778899999999999987765 2211 11 1223 578999998888888755
Q ss_pred Ee-cCH-HHHHHHHHcCCCEEEEecC--CCC------------------------C----------CC------------
Q 018919 211 GV-LTA-EDARIAVQAGAAGIIVSNH--GAR------------------------Q----------LD------------ 240 (349)
Q Consensus 211 ~v-~~~-~~a~~a~~~G~d~I~v~~~--gg~------------------------~----------~~------------ 240 (349)
.. .++ +.++.+.++|+|+|++... ... . .|
T Consensus 69 lmv~dp~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~pg~g 148 (230)
T 1tqj_A 69 LMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFG 148 (230)
T ss_dssp EESSSGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC---
T ss_pred EEccCHHHHHHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEeccccC
Confidence 43 333 3478889999999988532 110 0 00
Q ss_pred ---CchhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 241 ---YVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 241 ---~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
..+..++.+.++++... .++||.++|||.. +.+.++.++|||.+.+||+++.
T Consensus 149 gq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~ 206 (230)
T 1tqj_A 149 GQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFN 206 (230)
T ss_dssp -CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHT
T ss_pred CccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHC
Confidence 11334667777766552 2699999999998 8998999999999999999874
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-05 Score=74.14 Aligned_cols=164 Identities=25% Similarity=0.288 Sum_probs=102.6
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEee-----cCCh-hHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYV-----YKDR-NVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~-----~~~~-~~~~~~~~~~~~~G~~~i~i~~d~p~~g~ 164 (349)
..+.+.+.+.|+..+..+.+ -++... ......++.+-. ..++ +.....++++.+.|++.+.+.++.-..
T Consensus 44 ~~~~~~a~~~~~~av~v~~~--~v~~~~-~~~~~liv~~~~~~~~~g~~~~~~~~~~ve~Ai~~Ga~~v~~~~nig~~-- 118 (263)
T 1w8s_A 44 EYILRLARDAGFDGVVFQRG--IAEKYY-DGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSG-- 118 (263)
T ss_dssp HHHHHHHHHHTCSEEEECHH--HHHHHC-CSSSCEEEECEECCTTCCSSCCCEESSCHHHHHHTTCSEEEEEECTTST--
T ss_pred HHHHHHHHhhCCCEEEECHH--HHHHhh-cCCCcEEEEEeCCCCcCCCCccchHHHHHHHHHHCCCCEEEEEEecCCc--
Confidence 36888888898776653211 122222 111222333311 1111 122345678888999999887743210
Q ss_pred hhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHH---HhcCCcEEEEEec---------CHHH----HHHHHHcCCC
Q 018919 165 READIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQ---TITKLPILVKGVL---------TAED----ARIAVQAGAA 227 (349)
Q Consensus 165 r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~---~~~~~pv~vK~v~---------~~~~----a~~a~~~G~d 227 (349)
+.. ..+.+++++ +.+++|+++=... +.+. ++.+.++|+|
T Consensus 119 ------------------------~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD 174 (263)
T 1w8s_A 119 ------------------------FEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGAD 174 (263)
T ss_dssp ------------------------THHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCS
T ss_pred ------------------------CHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCC
Confidence 011 134444444 4468998875434 4433 4678899999
Q ss_pred EEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCC--CHHHHHHHH----HhCCCEEEEchHHHH
Q 018919 228 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR--RGTDVFKAL----ALGASGIFIGRPVVY 293 (349)
Q Consensus 228 ~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~--~~~dv~kal----~~GA~~V~ig~~~l~ 293 (349)
+|.++-. .+.+.+.++++.+ ..+||++.|||+ +.+|+++.+ +.||+++.+||.++.
T Consensus 175 ~vkt~~~---------~~~e~~~~~~~~~-~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~ 236 (263)
T 1w8s_A 175 AMKIKYT---------GDPKTFSWAVKVA-GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQ 236 (263)
T ss_dssp EEEEECC---------SSHHHHHHHHHHT-TTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred EEEEcCC---------CCHHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcC
Confidence 9999721 1457777777776 345999999999 889988877 899999999999874
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=98.46 E-value=9.7e-06 Score=72.56 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=111.6
Q ss_pred HHHHHHHHHcCCeEE-ec----CC---CCCCHHH---HHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCC
Q 018919 91 YATARAASAAGTIMT-LS----SW---STSSVEE---VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 91 ~~la~aa~~~G~~~~-~~----~~---~~~~~e~---i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~ 159 (349)
...++.+.+.|+.++ +. .+ ....++. +++..+.+.-+-++. .|++. .++.+.++|++.+.+|...
T Consensus 22 ~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv-~d~~~---~i~~~~~agad~v~vH~~~ 97 (228)
T 1h1y_A 22 AAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMV-TNPSD---YVEPLAKAGASGFTFHIEV 97 (228)
T ss_dssp HHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEES-SCGGG---GHHHHHHHTCSEEEEEGGG
T ss_pred HHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEe-cCHHH---HHHHHHHcCCCEEEECCCC
Confidence 356677788887643 22 11 1122343 333332345555666 45543 4666777999999998753
Q ss_pred CCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-cCH-HHHHHHHHc--CCCEEEEec-
Q 018919 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-LTA-EDARIAVQA--GAAGIIVSN- 233 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-~~~-~~a~~a~~~--G~d~I~v~~- 233 (349)
+ +.. .+.++.+++. ++++++-.- .++ +..+...+. ++|.|.+..
T Consensus 98 ~-----------------------------~~~~~~~~~~i~~~-g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv 147 (228)
T 1h1y_A 98 S-----------------------------RDNWQELIQSIKAK-GMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTV 147 (228)
T ss_dssp C-----------------------------TTTHHHHHHHHHHT-TCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESS
T ss_pred c-----------------------------ccHHHHHHHHHHHc-CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEee
Confidence 2 112 3457777664 777765432 233 334444554 999998853
Q ss_pred CCC-CCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHH
Q 018919 234 HGA-RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 234 ~gg-~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~ 312 (349)
++| ......+..++.+.++++... ++||+++|||.. +++.+++..|||.+.+||+++.+ +.....++.+++
T Consensus 148 ~pg~~g~~~~~~~l~~i~~~~~~~~-~~pi~v~GGI~~-~ni~~~~~aGaD~vvvGsai~~~------~d~~~~~~~l~~ 219 (228)
T 1h1y_A 148 EPGFGGQKFMPEMMEKVRALRKKYP-SLDIEVDGGLGP-STIDVAASAGANCIVAGSSIFGA------AEPGEVISALRK 219 (228)
T ss_dssp CTTCSSCCCCGGGHHHHHHHHHHCT-TSEEEEESSCST-TTHHHHHHHTCCEEEESHHHHTS------SCHHHHHHHHHH
T ss_pred cCCCCcccCCHHHHHHHHHHHHhcC-CCCEEEECCcCH-HHHHHHHHcCCCEEEECHHHHCC------CCHHHHHHHHHH
Confidence 222 111234455677777777653 799999999998 88989999999999999998742 123344555555
Q ss_pred HHH
Q 018919 313 EFE 315 (349)
Q Consensus 313 el~ 315 (349)
.++
T Consensus 220 ~~~ 222 (228)
T 1h1y_A 220 SVE 222 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=79.49 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHH
Q 018919 139 AQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~ 216 (349)
.+.+++..+.|++.+ .+++|.... + .+...+.++++.+.+.+|+.+.+ +.+.+
T Consensus 34 ~~~a~~~~~~gad~lhvvDld~a~~---------~----------------~~~~~~~i~~i~~~~~~pl~vGGGIrs~e 88 (243)
T 4gj1_A 34 LKKFKEYEKAGAKELHLVDLTGAKD---------P----------------SKRQFALIEKLAKEVSVNLQVGGGIRSKE 88 (243)
T ss_dssp HHHHHHHHHHTCCEEEEEEHHHHHC---------G----------------GGCCHHHHHHHHHHCCSEEEEESSCCCHH
T ss_pred HHHHHHHHHCCCCEEEEEecCcccc---------c----------------chhHHHHHHHHHHhcCCCeEeccccccHH
Confidence 456788888999987 455553210 0 01115789999999999998877 57999
Q ss_pred HHHHHHHcCCCEEEEecC---------------C----------------------CCC---------------------
Q 018919 217 DARIAVQAGAAGIIVSNH---------------G----------------------ARQ--------------------- 238 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~---------------g----------------------g~~--------------------- 238 (349)
+++.++++|||-|++... | ++.
T Consensus 89 ~~~~~l~~GadkVii~t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~g~~ei 168 (243)
T 4gj1_A 89 EVKALLDCGVKRVVIGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNKGLKHI 168 (243)
T ss_dssp HHHHHHHTTCSEEEECTTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHcCCCEEEEccccccCCchHHHHHhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhcCCcEE
Confidence 999999999999998621 1 100
Q ss_pred ------CCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 239 ------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 239 ------~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.++ .-+.++.+.++.+.+ .++|||++||+++.+|+.+ |..++++|.+|++|++
T Consensus 169 l~t~Id~DGt~~G~d~~l~~~l~~~~-~~ipviasGGv~~~~Dl~~-l~~~~~gvivg~Al~~ 229 (243)
T 4gj1_A 169 LCTDISKDGTMQGVNVRLYKLIHEIF-PNICIQASGGVASLKDLEN-LKGICSGVIVGKALLD 229 (243)
T ss_dssp EEEETTC-----CCCHHHHHHHHHHC-TTSEEEEESCCCSHHHHHH-TTTTCSEEEECHHHHT
T ss_pred EeeeecccccccCCCHHHHHHHHHhc-CCCCEEEEcCCCCHHHHHH-HHccCchhehHHHHHC
Confidence 011 123566777777665 2699999999999999965 5677999999999975
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=4.5e-06 Score=74.19 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 018919 195 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 274 (349)
Q Consensus 195 ~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv 274 (349)
.+.+.++..+.|++. ++.|++++..+.+.|+|+|.++. .. .-+| .+.+.+++..++ ++|+++.|||. .+.+
T Consensus 100 ~v~~~~~~~g~~~i~-G~~t~~e~~~A~~~Gad~v~~Fp--a~-~~gG---~~~lk~i~~~~~-~ipvvaiGGI~-~~n~ 170 (214)
T 1wbh_A 100 PLLKAATEGTIPLIP-GISTVSELMLGMDYGLKEFKFFP--AE-ANGG---VKALQAIAGPFS-QVRFCPTGGIS-PANY 170 (214)
T ss_dssp HHHHHHHHSSSCEEE-EESSHHHHHHHHHTTCCEEEETT--TT-TTTH---HHHHHHHHTTCT-TCEEEEBSSCC-TTTH
T ss_pred HHHHHHHHhCCCEEE-ecCCHHHHHHHHHCCCCEEEEec--Cc-cccC---HHHHHHHhhhCC-CCeEEEECCCC-HHHH
Confidence 454555557889887 58999999999999999999943 11 0112 456666666553 79999999995 5899
Q ss_pred HHHHHh-CCCEEEEchHHHH
Q 018919 275 FKALAL-GASGIFIGRPVVY 293 (349)
Q Consensus 275 ~kal~~-GA~~V~ig~~~l~ 293 (349)
.+.+++ |+++|. |+.++.
T Consensus 171 ~~~l~agg~~~v~-gS~i~~ 189 (214)
T 1wbh_A 171 RDYLALKSVLCIG-GSWLVP 189 (214)
T ss_dssp HHHHTSTTBSCEE-EGGGSC
T ss_pred HHHHhcCCCeEEE-eccccC
Confidence 999998 999999 887764
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.1e-07 Score=82.72 Aligned_cols=170 Identities=11% Similarity=0.013 Sum_probs=102.3
Q ss_pred HHHHHHHHHcCCeEEe----cCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchh
Q 018919 91 YATARAASAAGTIMTL----SSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~----~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~ 166 (349)
..+|+...+.|+..+. +......++++.+..+-+ +|+.+.- +. . .++++. +|++-+.++ +..
T Consensus 41 ~~~A~~~~~~Ga~~l~vvDL~~~n~~~i~~i~~~~~~p--v~vgGGi-r~--~-~~~~~l-~Ga~~Viig--s~a----- 106 (260)
T 2agk_A 41 SYYAKLYKDRDVQGCHVIKLGPNNDDAAREALQESPQF--LQVGGGI-ND--T-NCLEWL-KWASKVIVT--SWL----- 106 (260)
T ss_dssp HHHHHHHHHTTCTTCEEEEESSSCHHHHHHHHHHSTTT--SEEESSC-CT--T-THHHHT-TTCSCEEEC--GGG-----
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCCHHHHHHHHhcCCce--EEEeCCC-CH--H-HHHHHh-cCCCEEEEC--cHH-----
Confidence 3788999988865332 220111234444444433 5664432 22 2 445555 999987753 321
Q ss_pred HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHH-HhcCCcEEEE-----E--e-----------cCH-HHHHHHHHcC
Q 018919 167 ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQ-TITKLPILVK-----G--V-----------LTA-EDARIAVQAG 225 (349)
Q Consensus 167 ~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~-~~~~~pv~vK-----~--v-----------~~~-~~a~~a~~~G 225 (349)
+ ++. +..+|++ .+.++.+. +..-+++-+| + + ... +.++.+.++
T Consensus 107 ------~--------~~~-g~~~p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~- 170 (260)
T 2agk_A 107 ------F--------TKE-GHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKY- 170 (260)
T ss_dssp ------B--------CTT-CCBCHHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHHTTT-
T ss_pred ------H--------hhc-CCCCHHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHHHHh-
Confidence 0 000 0012444 34455554 3222345445 1 1 113 788999999
Q ss_pred CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC--CCcEEEecCCCCHHHHHHHHHh--CCCEEEEchHH
Q 018919 226 AAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALAL--GASGIFIGRPV 291 (349)
Q Consensus 226 ~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~--~ipvia~GGI~~~~dv~kal~~--GA~~V~ig~~~ 291 (349)
++.|.++....-+...|+ .++.+.+++++++. ++|||++|||++.+|+.+++.+ ||++|++|+++
T Consensus 171 a~~il~t~i~~dG~~~G~-d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 171 TNEFLIHAADVEGLCGGI-DELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp CSEEEEEC-------CCC-CHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred cCEEEEEeeccccCcCCC-CHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 999999543211223444 88999999988732 6999999999999999999998 99999999997
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=2.8e-06 Score=76.10 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchh-hHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 018919 195 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 195 ~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d 273 (349)
.+...++..+.|++. ++.|++++..+.++|+|+|.++. . ... ..+.|..++..++ ++|+++.|||. .+.
T Consensus 110 ~v~~~~~~~g~~~i~-G~~t~~e~~~A~~~Gad~vk~FP--a-----~~~~G~~~lk~i~~~~~-~ipvvaiGGI~-~~N 179 (225)
T 1mxs_A 110 DILEAGVDSEIPLLP-GISTPSEIMMGYALGYRRFKLFP--A-----EISGGVAAIKAFGGPFG-DIRFCPTGGVN-PAN 179 (225)
T ss_dssp HHHHHHHHCSSCEEC-EECSHHHHHHHHTTTCCEEEETT--H-----HHHTHHHHHHHHHTTTT-TCEEEEBSSCC-TTT
T ss_pred HHHHHHHHhCCCEEE-eeCCHHHHHHHHHCCCCEEEEcc--C-----ccccCHHHHHHHHhhCC-CCeEEEECCCC-HHH
Confidence 455555567889887 58999999999999999999932 1 111 2456666666553 79999999994 589
Q ss_pred HHHHHH-hCCCEEEEchHHHH
Q 018919 274 VFKALA-LGASGIFIGRPVVY 293 (349)
Q Consensus 274 v~kal~-~GA~~V~ig~~~l~ 293 (349)
+.+.++ .||++|. |+.++.
T Consensus 180 ~~~~l~~~Ga~~v~-gSai~~ 199 (225)
T 1mxs_A 180 VRNYMALPNVMCVG-TTWMLD 199 (225)
T ss_dssp HHHHHHSTTBCCEE-ECTTSC
T ss_pred HHHHHhccCCEEEE-EchhcC
Confidence 999999 6999999 987764
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-05 Score=78.37 Aligned_cols=146 Identities=16% Similarity=0.083 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc--cCC-CCCC-ch-HHHHHHHHHhc-CCcEEEEE
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--FQG-LDLG-KM-DEDVKWLQTIT-KLPILVKG 211 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~--~~~-~~~~-~~-~~~i~~i~~~~-~~pv~vK~ 211 (349)
..+.+++++++|+|+|+||... |+ +-++|..|. ...+. ..| +.++ .| .+.++.+|+.+ +-||.+|+
T Consensus 174 F~~AA~rA~~AGFDgVEIH~Ah---GY----Ll~QFLSp~-tN~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg~d~vgvRl 245 (400)
T 4gbu_A 174 YVQAAKNSIAAGADGVEIHSAN---GY----LLNQFLDPH-SNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRL 245 (400)
T ss_dssp HHHHHHHHHHTTCSEEEEECCT---TS----HHHHHHCTT-TCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred HHHHHHHHHhcCcCeeeecccc---cc----hHHheecCc-CCCCccccCCcHHHHHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 3456678889999999998753 32 223343331 01111 111 1112 35 68899999998 34899987
Q ss_pred ecC--------------H----HHHHHHHHc---C--CCEEEEecCCCCC--CCCchh--hHHHHHHHHHHhcCCCcEEE
Q 018919 212 VLT--------------A----EDARIAVQA---G--AAGIIVSNHGARQ--LDYVPA--TIMALEEVVKATQGRIPVFL 264 (349)
Q Consensus 212 v~~--------------~----~~a~~a~~~---G--~d~I~v~~~gg~~--~~~~~~--~~~~l~~i~~~~~~~ipvia 264 (349)
... . +.+..+... | .+.+.++...... ...+.. .......+++.+ ++|||+
T Consensus 246 S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~ 323 (400)
T 4gbu_A 246 SPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIW--KGPVIR 323 (400)
T ss_dssp CTTCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSSTTSCTTTTCCCSCCSTHHHHHC--CSCEEE
T ss_pred ccccccCCCCccchhhhHHHHHHHHHHHHHhhccCccccceeeecccCCCcccccccchhhhHHHHHHHHHh--CCCEEE
Confidence 521 0 112223222 2 3344443211100 000000 000111234444 799999
Q ss_pred ecCCCCHHHHHHHHHh-CCCEEEEchHHHH
Q 018919 265 DGGVRRGTDVFKALAL-GASGIFIGRPVVY 293 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~-GA~~V~ig~~~l~ 293 (349)
.|||.+..++.+.+.. +||+|.+||+++.
T Consensus 324 ~G~~~~~~~~~~~~~~~~aDlV~~gR~~ia 353 (400)
T 4gbu_A 324 AGNFALHPEVVREEVKDKRTLIGYGRFFIS 353 (400)
T ss_dssp ESSCTTCHHHHHHHTTSTTEEEECCHHHHH
T ss_pred eCCCCChHHHHHHHHcCCCeEhHHHHHHHH
Confidence 9999998888887775 6999999999985
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=6.3e-06 Score=74.05 Aligned_cols=164 Identities=16% Similarity=0.101 Sum_probs=97.4
Q ss_pred HHHHHHHHHcCCeEEe-cCCCCCCHHHHHhh-CCCceEEEEeec--CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchh
Q 018919 91 YATARAASAAGTIMTL-SSWSTSSVEEVAST-GPGIRFFQLYVY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~-~~~~~~~~e~i~~~-~~~~~~~Ql~~~--~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~ 166 (349)
..+.+.|.++|+..+. +-......+.+... .-..--+--|+. ...+.-...++.+.+.|++.|.+.++...
T Consensus 39 ~~l~~~a~~~~~~aVcv~p~~v~a~~~l~~~~~v~v~tvigFP~G~~~~~~k~~e~~~Av~~GAdEID~vinig~----- 113 (234)
T 1n7k_A 39 RNLVREASDYGFRCAVLTPVYTVKISGLAEKLGVKLCSVIGFPLGQAPLEVKLVEAQTVLEAGATELDVVPHLSL----- 113 (234)
T ss_dssp HHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHTCCEEEEESTTTCCSCHHHHHHHHHHHHHHTCCEEEECCCGGG-----
T ss_pred HHHHHHHHHhCCCEEEEchHHheeehHhCCCCCceEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccchH-----
Confidence 4677888888876543 21111111122211 111111212322 23344456677888899999988775321
Q ss_pred HHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHh---cCCcEEEEEe-----cCHHH----HHHHHHcCCCEEEEecC
Q 018919 167 ADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTI---TKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 167 ~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~---~~~pv~vK~v-----~~~~~----a~~a~~~G~d~I~v~~~ 234 (349)
..+ ...++++.+++. ++.|+ |.+ ++.+. ++.+.++|+|+|..|..
T Consensus 114 --------------------~~~-~v~~ei~~v~~a~~~~g~~l--KvIlEt~~L~~e~i~~a~ria~eaGADfVKTsTG 170 (234)
T 1n7k_A 114 --------------------GPE-AVYREVSGIVKLAKSYGAVV--KVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTG 170 (234)
T ss_dssp --------------------CHH-HHHHHHHHHHHHHHHTTCEE--EEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCS
T ss_pred --------------------HHH-HHHHHHHHHHHHHhhcCCeE--EEEEeccCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 012 125667666665 44654 665 34443 56688999999998742
Q ss_pred CCCCCCC-chhhHHHHHH--HHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 235 GARQLDY-VPATIMALEE--VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 235 gg~~~~~-~~~~~~~l~~--i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
. .+ +..+.+.+.. .++.++ +||-++|||++.+|+++++.+||+-++..
T Consensus 171 -~---~~~~gAt~~dv~l~~m~~~v~--v~VKaaGGirt~~~al~~i~aGa~RiG~S 221 (234)
T 1n7k_A 171 -V---YTKGGDPVTVFRLASLAKPLG--MGVKASGGIRSGIDAVLAVGAGADIIGTS 221 (234)
T ss_dssp -S---SCCCCSHHHHHHHHHHHGGGT--CEEEEESSCCSHHHHHHHHHTTCSEEEET
T ss_pred -C---CCCCCCCHHHHHHHHHHHHHC--CCEEEecCCCCHHHHHHHHHcCccccchH
Confidence 1 11 2345555444 555564 99999999999999999999999954443
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.5e-05 Score=71.68 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=99.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEec-CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~-d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK 210 (349)
.|.....+.++.+ +.|++.+.+++ |.. | +| +-.+ ...++.+|+.++.|+-+-
T Consensus 10 ~D~~~l~~~i~~~-~~gad~lHvDvmDG~------------f-vp------------n~t~G~~~v~~lr~~~~~~~dvh 63 (231)
T 3ctl_A 10 MDLLKFKEQIEFI-DSHADYFHIDIMDGH------------F-VP------------NLTLSPFFVSQVKKLATKPLDCH 63 (231)
T ss_dssp SCGGGHHHHHHHH-HTTCSCEEEEEECSS------------S-SS------------CCCBCHHHHHHHHTTCCSCEEEE
T ss_pred CChhhHHHHHHHH-HcCCCEEEEEEEeCc------------c-Cc------------cchhcHHHHHHHHhccCCcEEEE
Confidence 4666677888999 99999976654 321 1 12 1223 578999998888887666
Q ss_pred Ee-cCHHH-HHHHHHcCCCEEEEecCC-C------------------------CC----------CC-----------C-
Q 018919 211 GV-LTAED-ARIAVQAGAAGIIVSNHG-A------------------------RQ----------LD-----------Y- 241 (349)
Q Consensus 211 ~v-~~~~~-a~~a~~~G~d~I~v~~~g-g------------------------~~----------~~-----------~- 241 (349)
.. .+++. ++.+.++|||.|++...- . +. .| +
T Consensus 64 Lmv~dp~~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~pGfgg 143 (231)
T 3ctl_A 64 LMVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAG 143 (231)
T ss_dssp EESSCGGGTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCTTCSS
T ss_pred EEecCHHHHHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhcCCEEEEeeeccCcCC
Confidence 53 45543 788999999999875321 1 00 00 1
Q ss_pred ---chhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEc-hHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 242 ---VPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG-RPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 242 ---~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig-~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
.+..++-+.++++... .+++|.++|||.. +.+.++.++|||.+.+| |+++.+ .. ...+.++.+++.+
T Consensus 144 Q~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~~-~~~~~~~~aGAd~~V~G~saif~~---~d--~~~~~~~~l~~~~ 217 (231)
T 3ctl_A 144 QPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQ-ATYEKLMAAGADVFIVGTSGLFNH---AE--NIDEAWRIMTAQI 217 (231)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCST-TTHHHHHHHTCCEEEECTTTTGGG---CS--SHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhccCCCceEEEECCcCH-HHHHHHHHcCCCEEEEccHHHhCC---CC--cHHHHHHHHHHHH
Confidence 2345666666666542 2689999999985 78889999999999999 887631 11 0334555565554
Q ss_pred H
Q 018919 315 E 315 (349)
Q Consensus 315 ~ 315 (349)
+
T Consensus 218 ~ 218 (231)
T 3ctl_A 218 L 218 (231)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3.7e-06 Score=76.09 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=61.4
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 214 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 214 ~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
..+.|+.+.++|+|.|.++...+. .......++.+.++++.+ ++||+++|||++++|+.++++.|||+|++|++++
T Consensus 37 ~~~~a~~~~~~G~~~i~v~d~~~~-~~~~~~~~~~i~~i~~~~--~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l 112 (247)
T 3tdn_A 37 LRDWVVEVEKRGAGEILLTSIDRD-GTKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLRGADKVSINTAAV 112 (247)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTT-TCSSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEecCcc-cCCCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHh
Confidence 457899999999999998653211 111234578888888776 7999999999999999999999999999999876
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=5.6e-05 Score=67.49 Aligned_cols=171 Identities=20% Similarity=0.117 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceE--EEEeec--CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchh
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF--FQLYVY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~--~Ql~~~--~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~ 166 (349)
..+.+.|.+.|+..+.- .+.-++...+...+... +-=|+. ...+.-...++. .+.|++.|.+.++...
T Consensus 20 ~~l~~~A~~~~~~aVcv--~p~~v~~a~~~l~gv~v~tvigFP~G~~~~~~k~~E~~~-i~~GAdEID~Vinig~----- 91 (226)
T 1vcv_A 20 VAGARKAEELGVAAYCV--NPIYAPVVRPLLRKVKLCVVADFPFGALPTASRIALVSR-LAEVADEIDVVAPIGL----- 91 (226)
T ss_dssp HHHHHHHHHHTCSEEEE--CGGGHHHHGGGCSSSEEEEEESTTTCCSCHHHHHHHHHH-HTTTCSEEEEECCHHH-----
T ss_pred HHHHHHHHHhCCCEEEE--CHHHHHHHHHHhCCCeEEEEeCCCCCCCchHHHHHHHHH-HHCCCCEEEEecchhh-----
Confidence 46788888888765431 12123333322222111 111222 233333456667 7889999987775310
Q ss_pred HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-----cCHHH----HHHHHHcCCCEEEEecCCC
Q 018919 167 ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGA 236 (349)
Q Consensus 167 ~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-----~~~~~----a~~a~~~G~d~I~v~~~gg 236 (349)
+. . .+.+. .++|+.+++..+- ..+|.+ ++.++ ++.+.++|+|+|..|..-+
T Consensus 92 --~~------------~----g~~~~v~~ei~~v~~a~~~-~~lKvIlEt~~Lt~eei~~a~~ia~eaGADfVKTSTGf~ 152 (226)
T 1vcv_A 92 --VK------------S----RRWAEVRRDLISVVGAAGG-RVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFA 152 (226)
T ss_dssp --HH------------T----TCHHHHHHHHHHHHHHTTT-SEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCC
T ss_pred --hc------------C----CCHHHHHHHHHHHHHHHcC-CCceEEEeccCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 00 0 01222 5678888887643 256754 45544 5668899999999874211
Q ss_pred C------CCCCchhhH---HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh---CCC----EEEEc
Q 018919 237 R------QLDYVPATI---MALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GAS----GIFIG 288 (349)
Q Consensus 237 ~------~~~~~~~~~---~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~---GA~----~V~ig 288 (349)
. ..+.+..+. +.+.++.+.++++++|-++|||++.+|+++++.+ ||+ -++..
T Consensus 153 ~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~~~~fRiGtS 220 (226)
T 1vcv_A 153 EEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTS 220 (226)
T ss_dssp CHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEES
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCCcCCceEecC
Confidence 0 011233344 4444444447678999999999999999999999 999 66544
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=6.4e-06 Score=74.02 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=57.3
Q ss_pred CHHHHHHHHHcCC-----CEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 214 TAEDARIAVQAGA-----AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 214 ~~~~a~~a~~~G~-----d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+++.++...+.|. ..|.+... |. ....+.+.++++.+. ++|+++.|||++++++.+++. |||+|.+|
T Consensus 147 ~~e~~~~~a~~g~~~l~~~~Vyl~~~-G~-----~~~~~~i~~i~~~~~-~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVG 218 (234)
T 2f6u_A 147 DKELAASYALVGEKLFNLPIIYIEYS-GT-----YGNPELVAEVKKVLD-KARLFYGGGIDSREKAREMLR-YADTIIVG 218 (234)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECT-TS-----CCCHHHHHHHHHHCS-SSEEEEESCCCSHHHHHHHHH-HSSEEEEC
T ss_pred CHHHHHHHHHhhhhhcCCCEEEEeCC-CC-----cchHHHHHHHHHhCC-CCCEEEEecCCCHHHHHHHHh-CCCEEEEC
Confidence 5666777777776 77777652 32 335778888887752 689999999999999999888 99999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
++++.
T Consensus 219 Sa~v~ 223 (234)
T 2f6u_A 219 NVIYE 223 (234)
T ss_dssp HHHHH
T ss_pred hHHHh
Confidence 99985
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.4e-05 Score=70.00 Aligned_cols=166 Identities=18% Similarity=0.112 Sum_probs=94.3
Q ss_pred hhhHHHHHHHHHcCCeEE-ecC-----CCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCC
Q 018919 88 EGEYATARAASAAGTIMT-LSS-----WSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (349)
Q Consensus 88 ~~~~~la~aa~~~G~~~~-~~~-----~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p 160 (349)
+....+++.+.. |+..+ ++. .+...++++++..| .+.+.-+.. .|. ....++.+.++|++.+.+|....
T Consensus 13 ~~~~~~~~~~~~-~v~~iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~-~di--~~~~~~~a~~~Gad~v~vh~~~~ 88 (207)
T 3ajx_A 13 EAALELAGKVAE-YVDIIELGTPLIKAEGLSVITAVKKAHPDKIVFADMKT-MDA--GELEADIAFKAGADLVTVLGSAD 88 (207)
T ss_dssp HHHHHHHHHHGG-GCSEEEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEE-CSC--HHHHHHHHHHTTCSEEEEETTSC
T ss_pred HHHHHHHHHhhc-cCCEEEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEe-cCc--cHHHHHHHHhCCCCEEEEeccCC
Confidence 344566666655 54432 221 12223556666654 234433332 241 12356788889999998876421
Q ss_pred CCCchhHHhhhhcCCCCcCcccccCCCCCCchH-HHHHHHHHhcCCcEEEEEe--cCHHH-HHHHHHcCCCEEEEec-CC
Q 018919 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD-EDVKWLQTITKLPILVKGV--LTAED-ARIAVQAGAAGIIVSN-HG 235 (349)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~pv~vK~v--~~~~~-a~~a~~~G~d~I~v~~-~g 235 (349)
.... +.++.+++ .+.++.+-.. .++++ ++.+.+.|+|.|.+.. ..
T Consensus 89 -----------------------------~~~~~~~~~~~~~-~g~~~gv~~~s~~~p~~~~~~~~~~g~d~v~~~~~~~ 138 (207)
T 3ajx_A 89 -----------------------------DSTIAGAVKAAQA-HNKGVVVDLIGIEDKATRAQEVRALGAKFVEMHAGLD 138 (207)
T ss_dssp -----------------------------HHHHHHHHHHHHH-HTCEEEEECTTCSSHHHHHHHHHHTTCSEEEEECCHH
T ss_pred -----------------------------hHHHHHHHHHHHH-cCCceEEEEecCCChHHHHHHHHHhCCCEEEEEeccc
Confidence 0112 22344443 4666533111 15655 6777788999995532 11
Q ss_pred CCCCCCchhhH-HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 236 ARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 236 g~~~~~~~~~~-~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+. ..|.... +.++++... ++|++++|||+ ++++.++++.|||+|.+||+++.
T Consensus 139 ~~--~~g~~~~~~~i~~~~~~---~~pi~v~GGI~-~~~~~~~~~aGad~vvvGsaI~~ 191 (207)
T 3ajx_A 139 EQ--AKPGFDLNGLLAAGEKA---RVPFSVAGGVK-VATIPAVQKAGAEVAVAGGAIYG 191 (207)
T ss_dssp HH--TSTTCCTHHHHHHHHHH---TSCEEEESSCC-GGGHHHHHHTTCSEEEESHHHHT
T ss_pred cc--ccCCCchHHHHHHhhCC---CCCEEEECCcC-HHHHHHHHHcCCCEEEEeeeccC
Confidence 00 0111111 444444332 68999999998 78898999999999999999874
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=98.19 E-value=6e-05 Score=70.01 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=76.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHH---HhcCCcEEEEEe-----
Q 018919 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQ---TITKLPILVKGV----- 212 (349)
Q Consensus 141 ~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~---~~~~~pv~vK~v----- 212 (349)
.++.+.+.|++++.++++.-. +. +....+.+.+++ +.+++|+++=..
T Consensus 130 ~ve~Av~~GAdaV~~~i~~Gs---~~----------------------~~~~l~~i~~v~~~a~~~GlpvIie~~~G~~~ 184 (295)
T 3glc_A 130 SMDDAVRLNSCAVAAQVYIGS---EY----------------------EHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDM 184 (295)
T ss_dssp CHHHHHHTTCSEEEEEECTTS---TT----------------------HHHHHHHHHHHHHHHHTTTCCEEEEECC----
T ss_pred HHHHHHHCCCCEEEEEEECCC---Cc----------------------HHHHHHHHHHHHHHHHHcCCEEEEECCCCCcc
Confidence 466778899999988875310 00 001133344443 345899887221
Q ss_pred -cCHH----HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH-H----HHHHHHHhCC
Q 018919 213 -LTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-T----DVFKALALGA 282 (349)
Q Consensus 213 -~~~~----~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-~----dv~kal~~GA 282 (349)
.+++ .++.+.++|+|+|.++-.+ +.+.++++.+ ++||++.||+... + .+.+++.+||
T Consensus 185 ~~d~e~i~~aariA~elGAD~VKt~~t~-----------e~~~~vv~~~--~vPVv~~GG~~~~~~~~l~~v~~ai~aGA 251 (295)
T 3glc_A 185 VRDQRYFSLATRIAAEMGAQIIKTYYVE-----------KGFERIVAGC--PVPIVIAGGKKLPEREALEMCWQAIDQGA 251 (295)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECCT-----------TTHHHHHHTC--SSCEEEECCSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCH-----------HHHHHHHHhC--CCcEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 2333 4678899999999986211 2345666555 7999999999953 3 3556678999
Q ss_pred CEEEEchHHHH
Q 018919 283 SGIFIGRPVVY 293 (349)
Q Consensus 283 ~~V~ig~~~l~ 293 (349)
++|.+||.++.
T Consensus 252 ~Gv~vGRnI~q 262 (295)
T 3glc_A 252 SGVDMGRNIFQ 262 (295)
T ss_dssp SEEEESHHHHT
T ss_pred eEEEeHHHHhc
Confidence 99999998874
|
| >3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00016 Score=64.30 Aligned_cols=186 Identities=13% Similarity=0.127 Sum_probs=121.0
Q ss_pred hHHHHHHHHHcCCeEEecCC------C---CCCH----HHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEe
Q 018919 90 EYATARAASAAGTIMTLSSW------S---TSSV----EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~------~---~~~~----e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~ 156 (349)
+..-.+.+.+.|..-.++|. + ..+. +++.+..+++..+|+.. .|.+.+.+.++++.+.+ +-+.|.
T Consensus 9 n~~ei~~~~~~g~i~GVTTNPsli~k~~~~g~~~~~~~~ei~~~v~G~Vs~EV~a-~d~e~mi~eA~~L~~~~-~nv~IK 86 (223)
T 3s1x_A 9 NIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVS-TKYEGMVEEARKIHGLG-DNAVVK 86 (223)
T ss_dssp CHHHHHHHHHHTCCCEEECCHHHHHHHSCTTCCHHHHHHHHHHHCSSCEEEECCC-CSHHHHHHHHHHHHHTC-TTEEEE
T ss_pred CHHHHHHHHhcCCcccccCCHHHHHhhhccCCCHHHHHHHHHHhCCCCEEEEEcc-CCHHHHHHHHHHHHHhC-CCEEEE
Confidence 44445556666654444433 1 1233 34555567778889875 67777878888888775 445666
Q ss_pred cCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCC
Q 018919 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA 236 (349)
Q Consensus 157 ~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg 236 (349)
+.++.. | .+.++.+.+. ++++-+-.+.+...|..|.++||+.|.. .=|
T Consensus 87 IP~T~e---------------G--------------l~A~~~L~~~-GI~vn~TlifS~~QA~~Aa~AGa~yISP--fvg 134 (223)
T 3s1x_A 87 IPMTED---------------G--------------LRAIKTLSSE-HINTNCTLVFNPIQALLAAKAGVTYVSP--FVG 134 (223)
T ss_dssp EESSHH---------------H--------------HHHHHHHHHT-TCCEEEEEECSHHHHHHHHHTTCSEEEE--BSH
T ss_pred eCCCHH---------------H--------------HHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHcCCeEEEe--ecc
Confidence 543210 0 3456666654 8999998999999999999999998865 334
Q ss_pred CCCCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcC--HHHHHHHHHHH
Q 018919 237 RQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 310 (349)
Q Consensus 237 ~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G--~~gv~~~l~~l 310 (349)
|-.|.+.+....+.++.+.+ +.+..|++.+ +|+..++.++..+|||.+-+.-.++..+...- ..|++++.+.+
T Consensus 135 Ri~d~g~dG~~~v~~i~~~~~~~~~~T~IlaAS-~Rn~~~v~~aa~~G~d~~Tip~~vl~~l~~hpltd~~~~~F~~Dw 212 (223)
T 3s1x_A 135 RLDDIGEDGMQIIDMIRTIFNNYIIKTQILVAS-IRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDW 212 (223)
T ss_dssp HHHHTTSCTHHHHHHHHHHHHHTTCCSEEEEBS-CCSHHHHHHHHHHTCSEEEECHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHhhcCCCHHHHHHHHHHHHHHcCCCCEEEEEe-CCCHHHHHHHHHcCCCEEEeCHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 43334444455566665544 2245566555 99999999999999999999998887654311 23455444444
|
| >3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00037 Score=61.42 Aligned_cols=186 Identities=16% Similarity=0.121 Sum_probs=123.9
Q ss_pred hHHHHHHHHHcCCeEEecCC------C-CCCH----HHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecC
Q 018919 90 EYATARAASAAGTIMTLSSW------S-TSSV----EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~------~-~~~~----e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d 158 (349)
+..-.+.+.+.|..-.++|. + ..+. .++.+..+++..+|+. ..|.+.+.+.++++.+.+ +-+.|.+.
T Consensus 9 n~~ei~~~~~~g~i~GVTTNPsli~k~~g~~~~~~~~eI~~~v~G~Vs~EV~-a~d~e~mi~ea~~l~~~~-~nv~IKIP 86 (212)
T 3r8r_A 9 NIDEIREANELGILAGVTTNPSLVAKEANVSFHDRLREITDVVKGSVSAEVI-SLKAEEMIEEGKELAKIA-PNITVKIP 86 (212)
T ss_dssp CHHHHHHHHHTTCEEEEECCHHHHHTSCSSCHHHHHHHHHHHCCSCEEEECC-CSSHHHHHHHHHHHHTTC-TTEEEEEE
T ss_pred CHHHHHHHHhcCCcccccCCHHHHHHccCCCHHHHHHHHHHhcCCCEEEEEe-cCCHHHHHHHHHHHHHhC-CCEEEEeC
Confidence 55666777888877666654 1 1233 3445556777888985 367777777778877775 44566554
Q ss_pred CCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ 238 (349)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~ 238 (349)
+... | .+.++.+.+. ++++-+-.+.+...|..|.++||+.|.. .=||-
T Consensus 87 ~T~e---------------G--------------l~A~~~L~~~-GI~vn~TlifS~~Qa~~Aa~AGa~yISP--fvgRi 134 (212)
T 3r8r_A 87 MTSD---------------G--------------LKAVRALTDL-GIKTNVTLIFNANQALLAARAGATYVSP--FLGRL 134 (212)
T ss_dssp SSHH---------------H--------------HHHHHHHHHT-TCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHH
T ss_pred CCHH---------------H--------------HHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHcCCeEEEe--ccchh
Confidence 3210 0 3456666554 8999998999999999999999998865 33443
Q ss_pred CCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcC--HHHHHHHHHHH
Q 018919 239 LDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 310 (349)
Q Consensus 239 ~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G--~~gv~~~l~~l 310 (349)
.|.+.+....+.++.+.+ +.+..|++.+ +|+..++.++..+|||.+-+.-.++..+...- ..|++++.+.|
T Consensus 135 ~d~~~dG~~~v~~i~~~~~~~~~~t~ilaAS-~R~~~~v~~~a~~G~d~~Tip~~vl~~l~~hpltd~~~~~F~~Dw 210 (212)
T 3r8r_A 135 DDIGHNGLDLISEVKQIFDIHGLDTQIIAAS-IRHPQHVTEAALRGAHIGTMPLKVIHALTKHPLTDKGIEQFLADW 210 (212)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHTCCCEEEEBS-CCSHHHHHHHHHTTCSEEEECHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hhcCCChHHHHHHHHHHHHHcCCCCEEEEec-CCCHHHHHHHHHcCCCEEEcCHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 334444556666665544 2355566555 99999999999999999999988887654311 23454444433
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-05 Score=72.54 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=87.4
Q ss_pred HHHHHHHcCCeEEecCCCCCCHHH------HHhh-CCCceEEEEeec-------CChhHHHHHHHHHHHcCCCEEEEecC
Q 018919 93 TARAASAAGTIMTLSSWSTSSVEE------VAST-GPGIRFFQLYVY-------KDRNVVAQLVRRAERAGFKAIALTVD 158 (349)
Q Consensus 93 la~aa~~~G~~~~~~~~~~~~~e~------i~~~-~~~~~~~Ql~~~-------~~~~~~~~~~~~~~~~G~~~i~i~~d 158 (349)
+.....+.|+...-.|-+..+-+| +++. .-+..|++|+.- .|+..+.+.++++.+.|+..+.++.|
T Consensus 65 ~~~~i~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~d 144 (265)
T 1wv2_A 65 LLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSD 144 (265)
T ss_dssp -----CTTTSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECS
T ss_pred HHhhhhhcCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 333444445554444444444443 1222 224568888664 45666777888888889999877888
Q ss_pred CCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEE-EecCHHHHHHHHHcCCCEEEEec
Q 018919 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.|..++|..++...+-+|.+.-.-...++.+ ++.|+++++..++||++. ++.+++++..+.+.|+|+|.+..
T Consensus 145 d~~~akrl~~~G~~aVmPlg~pIGsG~Gi~~---~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgS 217 (265)
T 1wv2_A 145 DPIIARQLAEIGCIAVMPLAGLIGSGLGICN---PYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNT 217 (265)
T ss_dssp CHHHHHHHHHSCCSEEEECSSSTTCCCCCSC---HHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESH
T ss_pred CHHHHHHHHHhCCCEEEeCCccCCCCCCcCC---HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 8877777776655443442210101111222 678899999889999988 47899999999999999999853
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=98.09 E-value=3.5e-05 Score=68.76 Aligned_cols=165 Identities=16% Similarity=0.081 Sum_probs=95.1
Q ss_pred CHHHHHhhCCC-ceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc
Q 018919 113 SVEEVASTGPG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (349)
Q Consensus 113 ~~e~i~~~~~~-~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (349)
-++++++..|+ ..++=+.....+... .+.+.++|++.+.+|..+. .+
T Consensus 48 ~v~~l~~~~p~~~iflDlKl~Dip~t~---~~~~~~~Gad~vtVH~~~g-----------------------------~~ 95 (221)
T 3exr_A 48 LVEVLRSLFPDKIIVADTKCADAGGTV---AKNNAVRGADWMTCICSAT-----------------------------IP 95 (221)
T ss_dssp HHHHHHHHCTTSEEEEEEEECSCHHHH---HHHHHTTTCSEEEEETTSC-----------------------------HH
T ss_pred HHHHHHHhCCCCcEEEEEEeeccHHHH---HHHHHHcCCCEEEEeccCC-----------------------------HH
Confidence 35666666553 334444332223332 3346788999988876432 01
Q ss_pred h-HHHHHHHHHhcC--CcEEEEEe--cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 192 M-DEDVKWLQTITK--LPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 192 ~-~~~i~~i~~~~~--~pv~vK~v--~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
. .+.++.+++.-. ..+.|-.. .+.+.++.+.+.|++.+++.-....+.++...+.+.+..+++.++.+++|.++|
T Consensus 96 ~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~~~~~~~~~~~~~~v~~~a~~~~~~Gvv~s~~e~~~ir~~~~~~~~i~v~g 175 (221)
T 3exr_A 96 TMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIEMGFRVSVTG 175 (221)
T ss_dssp HHHHHHHHHHHHCTTTCEEEEECCSSCCHHHHHHHHHTTCCEEEEECCHHHHHHTCCCCHHHHHHHHHHHHHTCEEEEES
T ss_pred HHHHHHHHHHhcCCCcceEEEEEcCCCCHHHHHHHHcCCHHHHHHHHHHhcCCCccccCHHHHHHHHHhhcCCceEEEEC
Confidence 1 223444544321 22333222 357778888888999888842111112222233445555655554478899999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018919 267 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 267 GI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~ 316 (349)
|| +++++.++..+|||.+.+||+++.+ +...+.++.++++++.
T Consensus 176 GI-~~~~~~~~~~aGad~~VvG~~I~~a------~dp~~a~~~~~~~~~~ 218 (221)
T 3exr_A 176 GL-SVDTLKLFEGVDVFTFIAGRGITEA------KNPAGAARAFKDEIKR 218 (221)
T ss_dssp SC-CGGGGGGGTTCCCSEEEECHHHHTS------SSHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHCCCCEEEECchhhCC------CCHHHHHHHHHHHHHH
Confidence 99 4577888888999999999987632 1123455666666654
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00014 Score=64.25 Aligned_cols=158 Identities=11% Similarity=0.083 Sum_probs=95.1
Q ss_pred CHHHHHhhCCC-ceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc
Q 018919 113 SVEEVASTGPG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (349)
Q Consensus 113 ~~e~i~~~~~~-~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (349)
.++.+++..|+ ..++-+.....+.. .++.+.++|++.+.+|.... .+
T Consensus 46 ~i~~l~~~~p~~~v~lD~kl~dip~t---~~~~~~~~Gad~itvh~~~g-----------------------------~~ 93 (216)
T 1q6o_A 46 AVRDLKALYPHKIVLADAKIADAGKI---LSRMCFEANADWVTVICCAD-----------------------------IN 93 (216)
T ss_dssp HHHHHHHHCTTSEEEEEEEECSCHHH---HHHHHHHTTCSEEEEETTSC-----------------------------HH
T ss_pred HHHHHHHhCCCCeEEEEEEecccHHH---HHHHHHhCCCCEEEEeccCC-----------------------------HH
Confidence 45666666542 23333332222333 34467789999998876431 01
Q ss_pred h-HHHHHHHHHhcCCcEEEEEe--cCHHHHHHHHHcCCCEEEEecC-----CCCCCCCchhhHHHHHHHHHHhcCCCcEE
Q 018919 192 M-DEDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNH-----GARQLDYVPATIMALEEVVKATQGRIPVF 263 (349)
Q Consensus 192 ~-~~~i~~i~~~~~~pv~vK~v--~~~~~a~~a~~~G~d~I~v~~~-----gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 263 (349)
. ...++.+++ .+.++.++.+ .+...++.+.+.|.+.+++.-. .| .+ | ..+.+.++++.++.++||+
T Consensus 94 ~l~~~~~~~~~-~g~~~~~~ll~~~t~~~~~~l~~~~~~~~vl~~a~~~~~~G--~~-g--~~~~i~~lr~~~~~~~~i~ 167 (216)
T 1q6o_A 94 TAKGALDVAKE-FNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAG--VA-W--GEADITAIKRLSDMGFKVT 167 (216)
T ss_dssp HHHHHHHHHHH-TTCEEEEEECSCCCHHHHHHHHHTTCCEEEEECCHHHHHTT--CC-C--CHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHH-cCCCceeeeeeCCChhhHHHHHhcCcHHHHHHHHHHHHhcC--CC-C--CHHHHHHHHHhcCCCCcEE
Confidence 1 233555554 4777655443 2355667777788887777311 11 11 2 2455556666554468899
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 264 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
++|||+ ++.+.+++++|||.+.+||+++.+ .. ..+.++.++++++
T Consensus 168 v~GGI~-~~~~~~~~~aGad~ivvG~~I~~a---~d---p~~~~~~~~~~i~ 212 (216)
T 1q6o_A 168 VTGGLA-LEDLPLFKGIPIHVFIAGRSIRDA---AS---PVEAARQFKRSIA 212 (216)
T ss_dssp EESSCC-GGGGGGGTTSCCSEEEESHHHHTS---SC---HHHHHHHHHHHHH
T ss_pred EECCcC-hhhHHHHHHcCCCEEEEeehhcCC---CC---HHHHHHHHHHHHH
Confidence 999999 678888999999999999998742 12 2344555555554
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=5e-05 Score=66.88 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=91.9
Q ss_pred CCCHHHHHhhCCCceEEEEeecCC-hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCC
Q 018919 111 TSSVEEVASTGPGIRFFQLYVYKD-RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL 189 (349)
Q Consensus 111 ~~~~e~i~~~~~~~~~~Ql~~~~~-~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~ 189 (349)
...++++++......++-+.. .| .......++.+.++|++.+.+|....
T Consensus 40 ~~~i~~lr~~~~~~v~~D~kl-~DI~~t~~~~v~~~~~~Gad~vtvh~~~g----------------------------- 89 (208)
T 2czd_A 40 VDIIRRLKEETGVEIIADLKL-ADIPNTNRLIARKVFGAGADYVIVHTFVG----------------------------- 89 (208)
T ss_dssp TTHHHHHHHHHCCEEEEEEEE-CSCHHHHHHHHHHHHHTTCSEEEEESTTC-----------------------------
T ss_pred HHHHHHHHHcCCCEEEEEeee-CchHHHHHHHHHHHHhcCCCEEEEeccCC-----------------------------
Confidence 334566665521123333322 23 23445677888899999998876432
Q ss_pred CchHHHHHHHHHhcCCcEEEEEec-C---------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCC
Q 018919 190 GKMDEDVKWLQTITKLPILVKGVL-T---------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR 259 (349)
Q Consensus 190 ~~~~~~i~~i~~~~~~pv~vK~v~-~---------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ 259 (349)
.+.++.+++..++.+...... . ...++.+.+.|+++++++.+ ..+.+.++++.++ .
T Consensus 90 ---~~~i~~~~~~~gv~vl~~t~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~~----------~~~~i~~lr~~~~-~ 155 (208)
T 2czd_A 90 ---RDSVMAVKELGEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGT----------RPERIGYIRDRLK-E 155 (208)
T ss_dssp ---HHHHHHHHTTSEEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCS----------STHHHHHHHHHSC-T
T ss_pred ---HHHHHHHHHhCCcEEEEecCCcchhhHHHHHHHHHHHHHHHhCCcEEEECCC----------ChHHHHHHHHhCC-C
Confidence 123555554332222222110 0 12367788999999987543 1244556666653 2
Q ss_pred CcEEEecCCCC-HHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 260 IPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 260 ipvia~GGI~~-~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
-+++++|||+. +.++.+++++|||.+.+||+++.+ +...+.++.+++++
T Consensus 156 ~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a------~dp~~~~~~l~~~i 205 (208)
T 2czd_A 156 GIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNA------PNPREAAKAIYDEI 205 (208)
T ss_dssp TCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTS------SSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhcC------CCHHHHHHHHHHHH
Confidence 34679999997 558999999999999999998852 12345566666654
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=2.8e-05 Score=70.19 Aligned_cols=76 Identities=26% Similarity=0.302 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.++|+|.|.++..... .......++.+.++++.+ ++||++.|||++.+++.+++++|||+|.+|+..+.
T Consensus 34 ~~~a~~~~~~Gad~i~v~d~~~~-~~~~~~~~~~i~~i~~~~--~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 109 (252)
T 1ka9_F 34 VEAARAYDEAGADELVFLDISAT-HEERAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 109 (252)
T ss_dssp HHHHHHHHHHTCSCEEEEECCSS-TTCHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEcCCcc-ccCccccHHHHHHHHHhC--CCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 36788889999999998743211 112234566777777665 79999999999999999999999999999998874
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.8e-05 Score=70.90 Aligned_cols=122 Identities=20% Similarity=0.175 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcC-CcEEEEEe
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITK-LPILVKGV 212 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~-~pv~vK~v 212 (349)
.+.-...++.+.+.|++.|.+.++... +. . .+.+. .++|+.+++..+ .+..+|.+
T Consensus 84 ~~~Kv~E~~~Av~~GAdEIDmVinig~-------l~------------~----g~~~~v~~ei~~v~~a~~~~g~~lKvI 140 (260)
T 1p1x_A 84 IDIALAETRAAIAYGADEVDVVFPYRA-------LM------------A----GNEQVGFDLVKACKEACAAANVLLKVI 140 (260)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCHHH-------HH------------T----TCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHh-------hh------------C----CCHHHHHHHHHHHHHHhcccCCeEEEE
Confidence 344456677888899999987775310 00 0 12233 567888887653 23466776
Q ss_pred c------CHH----HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHH-----hcCCCcEEEecCCCCHHHHHHH
Q 018919 213 L------TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA-----TQGRIPVFLDGGVRRGTDVFKA 277 (349)
Q Consensus 213 ~------~~~----~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~-----~~~~ipvia~GGI~~~~dv~ka 277 (349)
. +.+ -++.+.++|+|+|..|.. . ..+..+.+.+..+++. ++.+++|-++|||++.+|++++
T Consensus 141 lEt~~L~d~e~i~~a~~ia~eaGADfVKTSTG-f---~~~gAt~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~ 216 (260)
T 1p1x_A 141 IETGELKDEALIRKASEISIKAGADFIKTSTG-K---VAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKY 216 (260)
T ss_dssp CCHHHHCSHHHHHHHHHHHHHTTCSEEECCCS-C---SSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHH
T ss_pred EecccCCcHHHHHHHHHHHHHhCCCEEEeCCC-C---CCCCCCHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHH
Confidence 2 233 246688999999998742 1 1122344533333333 3468999999999999999999
Q ss_pred HHhCCC
Q 018919 278 LALGAS 283 (349)
Q Consensus 278 l~~GA~ 283 (349)
+.+||+
T Consensus 217 i~aga~ 222 (260)
T 1p1x_A 217 LAIADE 222 (260)
T ss_dssp HHHHHH
T ss_pred HHhhhh
Confidence 999876
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.03 E-value=3.3e-05 Score=69.76 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.++|+|.|.++.-.+.. ......++.+.++++.+ ++||++.|||++++++.+++++|||+|.+|+..+.
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~ 108 (253)
T 1thf_D 33 VELGKFYSEIGIDELVFLDITASV-EKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEESSCSS-SHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCchhh-cCCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 366788899999999987532211 12234566777777654 79999999999999999999999999999998764
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=2.8e-05 Score=71.47 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc---h-HHHHHHHHHhcCCcEEEE
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK---M-DEDVKWLQTITKLPILVK 210 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~---~-~~~i~~i~~~~~~pv~vK 210 (349)
.+.-...++.+.+.|++.|.+.++... +.. .+.+ . .++|+.+++..+ +..+|
T Consensus 105 ~~~Kv~E~~~Av~~GAdEIDmVinig~-------lks----------------g~~~~~~~v~~eI~~v~~a~~-~~~lK 160 (281)
T 2a4a_A 105 MEKVLNDTEKALDDGADEIDLVINYKK-------IIE----------------NTDEGLKEATKLTQSVKKLLT-NKILK 160 (281)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCHHH-------HHH----------------SHHHHHHHHHHHHHHHHTTCT-TSEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecchHh-------hhC----------------CChhHHHHHHHHHHHHHHHhc-CCceE
Confidence 344456677888899999987775310 000 0112 2 567888888764 34668
Q ss_pred Eec------CHH----HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-------cCCCcEEEecCCCCHHH
Q 018919 211 GVL------TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-------QGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 211 ~v~------~~~----~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-------~~~ipvia~GGI~~~~d 273 (349)
.+. +.+ -++.+.++|+|+|..|..-+ .....+.....+.++.+.. +.+++|-++|||++.+|
T Consensus 161 VIlEt~~L~d~e~i~~A~~ia~eaGADfVKTSTGf~-~~gAT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~ 239 (281)
T 2a4a_A 161 VIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKV-QINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNT 239 (281)
T ss_dssp EECCHHHHCSHHHHHHHHHHHHTTTCSEEECCCSCS-SCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHH
T ss_pred EEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCCC-CCCCCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHH
Confidence 773 233 24668899999999874211 0001123334444443322 56899999999999999
Q ss_pred HHHHHHhCCC
Q 018919 274 VFKALALGAS 283 (349)
Q Consensus 274 v~kal~~GA~ 283 (349)
+++++.+||+
T Consensus 240 al~~i~aga~ 249 (281)
T 2a4a_A 240 ASHYILLARR 249 (281)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9999999886
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00033 Score=64.97 Aligned_cols=178 Identities=11% Similarity=0.042 Sum_probs=110.0
Q ss_pred hHHHHHHHHHcCCeEEecCCC-------------CCCHHHHH-------hhCCCceEEEE---eecCChhHHHHHHHHHH
Q 018919 90 EYATARAASAAGTIMTLSSWS-------------TSSVEEVA-------STGPGIRFFQL---YVYKDRNVVAQLVRRAE 146 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~-------------~~~~e~i~-------~~~~~~~~~Ql---~~~~~~~~~~~~~~~~~ 146 (349)
+...|+.+.++|+..++.+.+ ..+++++. +..+.|....+ |. .+++...+.+++++
T Consensus 26 D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg-~~~~~~~~~v~~l~ 104 (295)
T 1xg4_A 26 NANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFG-SSAFNVARTVKSMI 104 (295)
T ss_dssp SHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSS-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCcccC-CCHHHHHHHHHHHH
Confidence 447899999999887653221 13555543 23344566676 43 36777888899999
Q ss_pred HcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEecC----------
Q 018919 147 RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLT---------- 214 (349)
Q Consensus 147 ~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~---------- 214 (349)
++|+.++.|.=.+. |+..+-.....+.+.+. .+.|+.+++.. +.++.+.....
T Consensus 105 ~aGa~gv~iEd~~~---------------~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~a 169 (295)
T 1xg4_A 105 KAGAAGLHIEDQVG---------------AKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAA 169 (295)
T ss_dssp HHTCSEEEEECBCS---------------SCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHH
T ss_pred HcCCeEEEECCCCC---------------CcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHH
Confidence 99999987643221 11110000000112222 45566666654 45666655422
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCC--CCHH-HHHHHHHhCCCEEEEchHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV--RRGT-DVFKALALGASGIFIGRPV 291 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI--~~~~-dv~kal~~GA~~V~ig~~~ 291 (349)
.+.++...++|||.|.+ + +.++.+.+.++.+.+ ++|++++.-. .++. ...+.-++|.+.|.+|...
T Consensus 170 i~ra~ay~eAGAd~i~~--e-------~~~~~~~~~~i~~~~--~iP~~~N~~~~g~~p~~~~~eL~~~G~~~v~~~~~~ 238 (295)
T 1xg4_A 170 IERAQAYVEAGAEMLFP--E-------AITELAMYRQFADAV--QVPILANITEFGATPLFTTDELRSAHVAMALYPLSA 238 (295)
T ss_dssp HHHHHHHHHTTCSEEEE--T-------TCCSHHHHHHHHHHH--CSCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHH
T ss_pred HHHHHHHHHcCCCEEEE--e-------CCCCHHHHHHHHHHc--CCCEEEEecccCCCCCCCHHHHHHcCCCEEEEChHH
Confidence 25578899999999999 2 234678888898888 6899775432 2222 3334445999999999988
Q ss_pred HHH
Q 018919 292 VYS 294 (349)
Q Consensus 292 l~~ 294 (349)
+.+
T Consensus 239 ~~a 241 (295)
T 1xg4_A 239 FRA 241 (295)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.1e-05 Score=72.08 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=57.0
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
++.+.+.|...|.+...+ .+...+.+.++++.+...+||++.|||++.+|+.+++.+|||.|.+|++++.
T Consensus 192 a~~gad~G~~lV~LD~~~------~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~ 261 (286)
T 3vk5_A 192 LHVARAFGFHMVYLYSRN------EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQ 261 (286)
T ss_dssp HHHHHHTTCSEEEEECSS------SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSS
T ss_pred HHHHHHcCCCEEEEcCCC------CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhc
Confidence 455667888899887432 2345688888888774369999999999999999999999999999998863
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=8.2e-05 Score=66.63 Aligned_cols=77 Identities=26% Similarity=0.296 Sum_probs=61.3
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 214 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 214 ~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
..+.++.+.++|+|+|.++...+.. ...+..++.+.++++.+ ++||++.|||++.+++.+++++|||+|.++++.+.
T Consensus 35 ~~~~a~~~~~~G~d~i~v~~~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~ 111 (253)
T 1h5y_A 35 PVEMAVRYEEEGADEIAILDITAAP-EGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 111 (253)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCCT-TTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 3577899999999999987532211 12234567788887776 79999999999999999999999999999998763
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=9.2e-05 Score=68.82 Aligned_cols=86 Identities=22% Similarity=0.238 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCC-cEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 194 EDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 194 ~~i~~i~~~~~~-pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+.++.+++..+- +|++ .+.+.++++.+.++|+|+|.++|- +.+.+.++++.++++++|.++||| +.+
T Consensus 197 ~ai~~~r~~~~~~kI~v-ev~tlee~~eA~~aGaD~I~ld~~----------~~e~l~~~v~~~~~~~~I~ASGGI-t~~ 264 (296)
T 1qap_A 197 QAVEKAFWLHPDVPVEV-EVENLDELDDALKAGADIIMLDNF----------NTDQMREAVKRVNGQARLEVSGNV-TAE 264 (296)
T ss_dssp HHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEESSC----------CHHHHHHHHHTTCTTCCEEECCCS-CHH
T ss_pred HHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEECCC-CHH
Confidence 457777777643 5665 567889999999999999999751 346667777777667999999999 999
Q ss_pred HHHHHHHhCCCEEEEchHH
Q 018919 273 DVFKALALGASGIFIGRPV 291 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~ 291 (349)
.+.+..+.|+|.+.+|+..
T Consensus 265 ~i~~~a~~GvD~isvGsli 283 (296)
T 1qap_A 265 TLREFAETGVDFISVGALT 283 (296)
T ss_dssp HHHHHHHTTCSEEECSHHH
T ss_pred HHHHHHHcCCCEEEEeHHH
Confidence 9999999999999999854
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=3.7e-05 Score=70.77 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=68.2
Q ss_pred HHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc---CCCcEEEecCC
Q 018919 194 EDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 268 (349)
Q Consensus 194 ~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI 268 (349)
+.++.+|+..+ .++.+ .+.+.++++.+.++|+|+|.+++. ++ +.+.++++.++ .+++|.++|||
T Consensus 170 ~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~-------~~---~~l~~~v~~l~~~~~~~~i~AsGGI 238 (273)
T 2b7n_A 170 SFLTHARKNLPFTAKIEI-ECESFEEAKNAMNAGADIVMCDNL-------SV---LETKEIAAYRDAHYPFVLLEASGNI 238 (273)
T ss_dssp HHHHHHGGGSCTTCCEEE-EESSHHHHHHHHHHTCSEEEEETC-------CH---HHHHHHHHHHHHHCTTCEEEEESSC
T ss_pred HHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHcCCCEEEECCC-------CH---HHHHHHHHHhhccCCCcEEEEECCC
Confidence 45888888764 46666 677899999999999999999762 23 44444444442 25999999999
Q ss_pred CCHHHHHHHHHhCCCEEEEchHHH
Q 018919 269 RRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+.+.+.+.++.|||.+.+|+.+.
T Consensus 239 -~~~ni~~~~~aGaD~i~vGs~i~ 261 (273)
T 2b7n_A 239 -SLESINAYAKSGVDAISVGALIH 261 (273)
T ss_dssp -CTTTHHHHHTTTCSEEECTHHHH
T ss_pred -CHHHHHHHHHcCCcEEEEcHHhc
Confidence 88999999999999999999854
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00011 Score=65.54 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=53.0
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 219 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 219 ~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
..+.-.|...|.+.. .|+. ...+.+.++++.+. ++||++.|||++++++.+++ .|||+|.+|+++..
T Consensus 147 ~~a~~~g~~~VYld~-sG~~-----~~~~~i~~i~~~~~-~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~ 213 (228)
T 3vzx_A 147 RVSELLQLPIFYLEY-SGVL-----GDIEAVKKTKAVLE-TSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE 213 (228)
T ss_dssp HHHHHTTCSEEEEEC-TTSC-----CCHHHHHHHHHHCS-SSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH
T ss_pred HHHHHcCCCEEEecC-CCCc-----CCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhc
Confidence 334456789998876 3321 15788888888762 59999999999999998887 79999999999985
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00054 Score=61.21 Aligned_cols=159 Identities=10% Similarity=0.098 Sum_probs=99.6
Q ss_pred HHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch
Q 018919 114 VEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (349)
Q Consensus 114 ~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (349)
++.+++..| .++-+.|.. .|++.. ++...+ ++.+.+|..+.. ...
T Consensus 55 v~~lr~~~p~~~~dvhLmv-~dp~~~---i~~~~~--Ad~itvH~ea~~----------------------------~~~ 100 (227)
T 1tqx_A 55 INNLKKYTKSIFFDVHLMV-EYPEKY---VPLLKT--SNQLTFHFEALN----------------------------EDT 100 (227)
T ss_dssp HHHHGGGCSSCEEEEEEES-SCGGGG---GGGCTT--SSEEEEEGGGGT----------------------------TCH
T ss_pred HHHHHHhCCCCcEEEEEEE-cCHHHH---HHHHHh--CCEEEEeecCCc----------------------------cCH
Confidence 345555554 445566654 466632 222233 888888875421 011
Q ss_pred HHHHH---HHHHhcCCcEEEEEe-cC-HHHHHHHHHcC-CCEEEEec-CCCC-CCCCchhhHHHHHHHHHHhcCCCcEEE
Q 018919 193 DEDVK---WLQTITKLPILVKGV-LT-AEDARIAVQAG-AAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQGRIPVFL 264 (349)
Q Consensus 193 ~~~i~---~i~~~~~~pv~vK~v-~~-~~~a~~a~~~G-~d~I~v~~-~gg~-~~~~~~~~~~~l~~i~~~~~~~ipvia 264 (349)
.+.++ .+|+ .+..+.+-.- .+ .+.++...+.| +|.|.+-. +.|. +....+..++-+.++++..+ +++|.+
T Consensus 101 ~~~i~~~~~i~~-~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~-~~~I~V 178 (227)
T 1tqx_A 101 ERCIQLAKEIRD-NNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK-NLNIQV 178 (227)
T ss_dssp HHHHHHHHHHHT-TTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT-TCEEEE
T ss_pred HHHHHHHHHHHH-cCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhcc-CCeEEE
Confidence 35577 7776 4666555332 23 35567777776 99996643 3221 12345667888888887764 789999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
+|||. .+.+.++.++|||.+.+||+++. .+...+.++.+++.++
T Consensus 179 dGGI~-~~ti~~~~~aGAd~~V~GsaIf~------~~d~~~~i~~l~~~~~ 222 (227)
T 1tqx_A 179 DGGLN-IETTEISASHGANIIVAGTSIFN------AEDPKYVIDTMRVSVQ 222 (227)
T ss_dssp ESSCC-HHHHHHHHHHTCCEEEESHHHHT------CSSHHHHHHHHHHHHH
T ss_pred ECCCC-HHHHHHHHHcCCCEEEEeHHHhC------CCCHHHHHHHHHHHHH
Confidence 99998 68999999999999999998763 1123445556655544
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00024 Score=62.58 Aligned_cols=109 Identities=28% Similarity=0.315 Sum_probs=80.3
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV 212 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v 212 (349)
.+.+...+.++.+.+.|++.++++..++. ..+.++.+++ -++.+....+
T Consensus 22 ~~~~~~~~~~~~l~~gGv~~iel~~k~~~------------------------------~~~~i~~~~~-~~~~~gag~v 70 (207)
T 2yw3_A 22 RGGEDLLGLARVLEEEGVGALEITLRTEK------------------------------GLEALKALRK-SGLLLGAGTV 70 (207)
T ss_dssp CSCCCHHHHHHHHHHTTCCEEEEECSSTH------------------------------HHHHHHHHTT-SSCEEEEESC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCChH------------------------------HHHHHHHHhC-CCCEEEeCeE
Confidence 45666778889999999999999875431 1355777777 5667777767
Q ss_pred cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 213 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+.++++.|.++|+|+++..+ . +.+.+... +.. .++++. |+.|.+++.++++.|||.|.+
T Consensus 71 l~~d~~~~A~~~GAd~v~~~~-----~-----d~~v~~~~-~~~--g~~~i~--G~~t~~e~~~A~~~Gad~v~~ 130 (207)
T 2yw3_A 71 RSPKEAEAALEAGAAFLVSPG-----L-----LEEVAALA-QAR--GVPYLP--GVLTPTEVERALALGLSALKF 130 (207)
T ss_dssp CSHHHHHHHHHHTCSEEEESS-----C-----CHHHHHHH-HHH--TCCEEE--EECSHHHHHHHHHTTCCEEEE
T ss_pred eeHHHHHHHHHcCCCEEEcCC-----C-----CHHHHHHH-HHh--CCCEEe--cCCCHHHHHHHHHCCCCEEEE
Confidence 788999999999999996521 1 12233332 233 567665 499999999999999999998
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00032 Score=66.00 Aligned_cols=165 Identities=16% Similarity=0.179 Sum_probs=96.9
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec-------
Q 018919 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL------- 213 (349)
Q Consensus 141 ~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~------- 213 (349)
-++++.+.|+|++-+++..-.. .+.+++.. ...++..+..-+..+++|+++=.+.
T Consensus 115 sve~a~~~GADAVk~lv~~g~d--~~~e~~~~----------------q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~ 176 (332)
T 3iv3_A 115 SIKRLKEAGADAVKFLLYYDVD--GDPQVNVQ----------------KQAYIERIGSECQAEDIPFFLEILTYDETISN 176 (332)
T ss_dssp CHHHHHHTTCSEEEEEEEECTT--SCHHHHHH----------------HHHHHHHHHHHHHHHTCCEEEEEEECBTTBSC
T ss_pred CHHHHHHcCCCEEEEEEEcCCC--chHHHHHH----------------HHHHHHHHHHHHHHcCCceEEEEeccCCCCCC
Confidence 3678899999999777743100 00000000 0001233444455679999875432
Q ss_pred --CH-----------HHHHHH--HHcCCCEEEEecCCCCC----C------CCchhhHHHHHHHHHHhcCCCcEE-EecC
Q 018919 214 --TA-----------EDARIA--VQAGAAGIIVSNHGARQ----L------DYVPATIMALEEVVKATQGRIPVF-LDGG 267 (349)
Q Consensus 214 --~~-----------~~a~~a--~~~G~d~I~v~~~gg~~----~------~~~~~~~~~l~~i~~~~~~~ipvi-a~GG 267 (349)
+. +-++.+ .+.|+|.+.+--.|... + +......+...++.+.. .+|++ .+||
T Consensus 177 ~~~~~~a~~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~--~~P~v~lsgG 254 (332)
T 3iv3_A 177 NSSVEFAKVKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEAST--DLPYIYLSAG 254 (332)
T ss_dssp TTSHHHHTTHHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTC--SSCEEEECTT
T ss_pred CcchhhhccCHHHHHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcC--CCCEEEECCC
Confidence 11 224556 57799999995322110 0 11122234466666554 79965 7999
Q ss_pred CCCHHHHHH----HHHhCC--CEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 268 VRRGTDVFK----ALALGA--SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 268 I~~~~dv~k----al~~GA--~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
. +.++..+ |+..|| ++|.+||.... .++..+.+.=.+..+.+|...|..+|++|+.-.
T Consensus 255 ~-~~~~fl~~v~~A~~aGa~f~Gv~~GRnvwq-------~~v~~~~~~~~~~~~~~l~~~g~~~i~~l~~v~ 318 (332)
T 3iv3_A 255 V-SAELFQETLVFAHKAGAKFNGVLCGRATWA-------GSVQVYMEEGKEAARQWLRTSGLQNINELNKVL 318 (332)
T ss_dssp C-CHHHHHHHHHHHHHHTCCCCEEEECHHHHT-------THHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCcceEEeeHHHHH-------hhhhhhccccHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8 5566654 556899 99999998753 334444444455677888888888888887543
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00038 Score=64.99 Aligned_cols=124 Identities=23% Similarity=0.125 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHH---HHHHHHhcCCcEEEEEec---
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDED---VKWLQTITKLPILVKGVL--- 213 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~---i~~i~~~~~~pv~vK~v~--- 213 (349)
..++.+.+.|++++.+++..... . + .....+. +....+++++|+++=...
T Consensus 112 ~~ve~a~~~GAdaV~vlv~~~~d-~-----------~------------~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~ 167 (304)
T 1to3_A 112 INAQAVKRDGAKALKLLVLWRSD-E-----------D------------AQQRLNMVKEFNELCHSNGLLSIIEPVVRPP 167 (304)
T ss_dssp CCHHHHHHTTCCEEEEEEEECTT-S-----------C------------HHHHHHHHHHHHHHHHTTTCEEEEEEEECCC
T ss_pred hhHHHHHHcCCCEEEEEEEcCCC-c-----------c------------HHHHHHHHHHHHHHHHHcCCcEEEEEECCCC
Confidence 45778889999999766532100 0 0 0011333 344444579998876541
Q ss_pred ------CH----H-HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc--CCCc-EEEecCCCCHHH----HH
Q 018919 214 ------TA----E-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIP-VFLDGGVRRGTD----VF 275 (349)
Q Consensus 214 ------~~----~-~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~--~~ip-via~GGI~~~~d----v~ 275 (349)
++ . -++.+.+.|+|.+.+.-. . + +..+++.+.++.+... ..+| |++.||+ +.++ +.
T Consensus 168 ~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~-~---~-~~g~~~~~~~vv~~~~~~~~~P~Vv~aGG~-~~~~~~~~~~ 241 (304)
T 1to3_A 168 RCGDKFDREQAIIDAAKELGDSGADLYKVEMP-L---Y-GKGARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVR 241 (304)
T ss_dssp SSCSCCCHHHHHHHHHHHHTTSSCSEEEECCG-G---G-GCSCHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHH
T ss_pred ccccCCChhHHHHHHHHHHHHcCCCEEEeCCC-c---C-CCCCHHHHHHHHHhccccCCCCeEEEecCC-CHHHHHHHHH
Confidence 11 2 378888999999988421 0 0 0014455555555511 1789 9999999 5533 77
Q ss_pred HHHHhCCCEEEEchHHHH
Q 018919 276 KALALGASGIFIGRPVVY 293 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l~ 293 (349)
.++..||++|.+||.+..
T Consensus 242 ~a~~aGa~Gv~vGRaI~q 259 (304)
T 1to3_A 242 VAMEAGASGFLAGRAVWS 259 (304)
T ss_dssp HHHHTTCCEEEESHHHHG
T ss_pred HHHHcCCeEEEEehHHhC
Confidence 788899999999999875
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00019 Score=63.84 Aligned_cols=96 Identities=21% Similarity=0.279 Sum_probs=60.9
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCC--CCC---CCCchhhHHHHHHHHHHhcCCCcEEEecCCCC
Q 018919 196 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--ARQ---LDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~g--g~~---~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 270 (349)
++..++ .++.+++ .+.+.++.+++.+.|.+.|.+.+.- |+. ....+..++...+..+.+..++||++.|||++
T Consensus 104 ~~~a~~-~Gl~~iv-~v~~~~e~~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~ 181 (219)
T 2h6r_A 104 INKCKN-LGLETIV-CTNNINTSKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISK 181 (219)
T ss_dssp HHHHHH-HTCEEEE-EESSSHHHHHHTTTCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCS
T ss_pred HHHHHH-CCCeEEE-EeCCchHHHHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCc
Confidence 444444 3775554 3445556777888898888775421 111 11112112333333333334799999999999
Q ss_pred HHHHHHHHHhCCCEEEEchHHHH
Q 018919 271 GTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 271 ~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
++++.++...|||+|.||++++.
T Consensus 182 ~~~~~~~~~~gaDgvlVGsAi~~ 204 (219)
T 2h6r_A 182 GEDVKAALDLGAEGVLLASGVVK 204 (219)
T ss_dssp HHHHHHHHTTTCCCEEESHHHHT
T ss_pred HHHHHHHhhCCCCEEEEcHHHhC
Confidence 99999888899999999999985
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00013 Score=65.52 Aligned_cols=76 Identities=25% Similarity=0.267 Sum_probs=60.2
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 214 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 214 ~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
..+.++.+.++|+|.|.+..-.+. ....+.. +.+.++++.+ ++|+++.|||++++++.+++++|||.|.+|+..+.
T Consensus 33 ~~~~a~~~~~~Gad~i~v~~~d~~-~~~~~~~-~~i~~i~~~~--~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~ 108 (244)
T 2y88_A 33 AVDAALGWQRDGAEWIHLVDLDAA-FGRGSNH-ELLAEVVGKL--DVQVELSGGIRDDESLAAALATGCARVNVGTAALE 108 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHHH-TTSCCCH-HHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEcCccc-ccCCChH-HHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhh
Confidence 347788999999999999742111 1122334 7788888776 79999999999999999999999999999997764
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=97.79 E-value=2.2e-05 Score=70.61 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.++|+|.|.++...... ......++.+.+++ .+ ++||++.|||++.+++.+++++|||+|++|+..+.
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~-~~--~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 107 (241)
T 1qo2_A 33 VELVEKLIEEGFTLIHVVDLSNAI-ENSGENLPVLEKLS-EF--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp HHHHHHHHHTTCCCEEEEEHHHHH-HCCCTTHHHHHHGG-GG--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEecccccc-cCCchhHHHHHHHH-hc--CCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhh
Confidence 467889999999999997421100 01234567777776 54 79999999999999999999999999999998764
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.79 E-value=4.9e-05 Score=67.05 Aligned_cols=81 Identities=16% Similarity=0.080 Sum_probs=59.8
Q ss_pred EecCHHHHHHHHHcCCCEEEEecCCCCC---CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 211 GVLTAEDARIAVQAGAAGIIVSNHGARQ---LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 211 ~v~~~~~a~~a~~~G~d~I~v~~~gg~~---~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+.+++++..+. .|+|+|.++.-..+. ..+.+..++.+.++.+.+..++||++.|||. ++++.+++++||++|.+
T Consensus 94 s~~t~~e~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVav 171 (210)
T 3ceu_A 94 SCHSVEEVKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAVV 171 (210)
T ss_dssp EECSHHHHHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEEE
T ss_pred ecCCHHHHHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEEE
Confidence 457899999888 999999986421111 1112234677777766521279999999998 89999999999999999
Q ss_pred chHHHH
Q 018919 288 GRPVVY 293 (349)
Q Consensus 288 g~~~l~ 293 (349)
++.+..
T Consensus 172 ~s~i~~ 177 (210)
T 3ceu_A 172 LGDLWN 177 (210)
T ss_dssp SHHHHT
T ss_pred hHHhHc
Confidence 999864
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.76 E-value=9.2e-05 Score=71.57 Aligned_cols=97 Identities=22% Similarity=0.297 Sum_probs=69.1
Q ss_pred CCch-HHHHHHHHHhcCCcEEEEEec--CHHHHHHHHHcCCCEEEEecCCCCCCCCchh-hHHHHHHHHHHhcCCCcEEE
Q 018919 189 LGKM-DEDVKWLQTITKLPILVKGVL--TAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFL 264 (349)
Q Consensus 189 ~~~~-~~~i~~i~~~~~~pv~vK~v~--~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia 264 (349)
+++. .+.++++++. +.|++++... ..+.++.+.++|+|.+.+.+....+...++. .+..+.++++.. ++||++
T Consensus 140 d~~~~~~~i~~~~~~-g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~--~~pvi~ 216 (393)
T 2qr6_A 140 DTELLSERIAQVRDS-GEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSL--DVPVIA 216 (393)
T ss_dssp CHHHHHHHHHHHHHT-TSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHC--SSCEEE
T ss_pred CHHHHHHHHHHHhhc-CCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhc--CCCEEE
Confidence 3444 4568888875 8899887653 3456777889999999886432111112221 455677777776 799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
|||.+++|+.+++.+|||+|.+|+
T Consensus 217 -ggi~t~e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 217 -GGVNDYTTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp -ECCCSHHHHHHHHTTTCSEEEESC
T ss_pred -CCcCCHHHHHHHHHcCCCEEEECC
Confidence 899999999999999999999986
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.75 E-value=4.6e-05 Score=69.39 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=59.6
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 214 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 214 ~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
..+.++.+.++|+|.|.++.-..... .....++.+.++++.+ ++||++.|||++.+|+.+++++|||+|.+|+.++
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~-~~g~~~~~i~~i~~~~--~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~ 107 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGT-KSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADKALAASVFH 107 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSC-SSCCCHHHHHHHGGGC--CSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC-
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccC-CCcccHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHH
Confidence 45778999999999999965221111 1123567788777665 7999999999999999999999999999999876
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00014 Score=65.30 Aligned_cols=75 Identities=25% Similarity=0.272 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.++|+|.|.+..-.+.. .+.... +.+.++++.. ++|+++.|||++++++.+++++|||.|.+|+..+.
T Consensus 35 ~~~a~~~~~~Gad~i~v~~~d~~~-~~~~~~-~~i~~i~~~~--~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~ 109 (244)
T 1vzw_A 35 LEAALAWQRSGAEWLHLVDLDAAF-GTGDNR-ALIAEVAQAM--DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALE 109 (244)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHHH-TSCCCH-HHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEecCchhh-cCCChH-HHHHHHHHhc--CCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhh
Confidence 366888999999999986421110 122334 7788887776 79999999999999999999999999999997653
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=97.74 E-value=9.8e-05 Score=66.49 Aligned_cols=125 Identities=10% Similarity=-0.005 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--------CCcEEEE
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--------KLPILVK 210 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--------~~pv~vK 210 (349)
...++.+.++|++.+.+|..... ...+.++++++.. +..+.+-
T Consensus 82 ~~~i~~~~~aGAd~itvH~ea~~-----------------------------~~~~~i~~i~~~~~~~~~~~~g~~~gv~ 132 (237)
T 3cu2_A 82 LEVAKAVVANGANLVTLQLEQYH-----------------------------DFALTIEWLAKQKTTYANQVYPVLIGAC 132 (237)
T ss_dssp HHHHHHHHHTTCSEEEEETTCTT-----------------------------SHHHHHHHHTTCEEEETTEEEECEEEEE
T ss_pred HHHHHHHHHcCCCEEEEecCCcc-----------------------------cHHHHHHHHHhcccccccccCCceEEEE
Confidence 35678888999999999875421 1135677777641 4434332
Q ss_pred Ee-cCHHHHHHHHHcCCCEEEE-ecCCCC-CCCCchhhHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHH--hCC
Q 018919 211 GV-LTAEDARIAVQAGAAGIIV-SNHGAR-QLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALA--LGA 282 (349)
Q Consensus 211 ~v-~~~~~a~~a~~~G~d~I~v-~~~gg~-~~~~~~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~dv~kal~--~GA 282 (349)
.- .++.+.......++|.|.+ +-+.|. .....+..++-+.++++.... +++|.++|||. .+.+.++.+ +||
T Consensus 133 l~p~Tp~~~l~~~l~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGa 211 (237)
T 3cu2_A 133 LCPETPISELEPYLDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQI 211 (237)
T ss_dssp ECTTSCGGGGTTTTTTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCC
T ss_pred EeCCChHHHHHHHhhcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCC
Confidence 21 2443433334458998866 223221 112345566777777776632 58999999998 588999999 999
Q ss_pred CEEEEchHHHH
Q 018919 283 SGIFIGRPVVY 293 (349)
Q Consensus 283 ~~V~ig~~~l~ 293 (349)
|.+.+||+++.
T Consensus 212 d~~VvGSaIf~ 222 (237)
T 3cu2_A 212 DWLVSGSALFS 222 (237)
T ss_dssp CCEEECGGGGS
T ss_pred cEEEEeeHHhC
Confidence 99999999863
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00071 Score=62.10 Aligned_cols=115 Identities=16% Similarity=0.255 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~ 217 (349)
.+.++..++.|+++|-+..+... |. .-.++++.+|+.+++||+.|.. .++..
T Consensus 75 ~~~A~~y~~~GA~~isvltd~~~-----------f~----------------Gs~~~l~~ir~~v~lPvl~kdfiid~~q 127 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVTEQRR-----------FQ----------------GSLDDLDAVRASVSIPVLRKDFVVQPYQ 127 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCGGG-----------HH----------------HHHHHHHHHHHHCSSCEEEESCCCSHHH
T ss_pred HHHHHHHHHcCCCEEEEecChhh-----------cC----------------CCHHHHHHHHHhCCCCEEECccccCHHH
Confidence 46778888999999976433210 00 0046799999999999999974 67778
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+..+.++|||+|.+...- -.+..+..+.+..+.+ .+.+++ .+++.+++.+++.+|||.+.++.
T Consensus 128 v~~A~~~GAD~VlLi~a~-----l~~~~l~~l~~~a~~l--Gl~~lv--ev~t~ee~~~A~~~Gad~IGv~~ 190 (272)
T 3qja_A 128 IHEARAHGADMLLLIVAA-----LEQSVLVSMLDRTESL--GMTALV--EVHTEQEADRALKAGAKVIGVNA 190 (272)
T ss_dssp HHHHHHTTCSEEEEEGGG-----SCHHHHHHHHHHHHHT--TCEEEE--EESSHHHHHHHHHHTCSEEEEES
T ss_pred HHHHHHcCCCEEEEeccc-----CCHHHHHHHHHHHHHC--CCcEEE--EcCCHHHHHHHHHCCCCEEEECC
Confidence 899999999999984210 1122333333333333 566665 47999999999999999999984
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00036 Score=64.45 Aligned_cols=86 Identities=26% Similarity=0.320 Sum_probs=67.9
Q ss_pred HHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 195 DVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 195 ~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
.++.+|+..+ .+|.+ .+.+.++++.+.++|+|+|.+.|- ..+.++++++.++.++|+.++|||. .+
T Consensus 185 av~~ar~~~~~~~~IgV-ev~t~eea~eA~~aGaD~I~ld~~----------~~~~~k~av~~v~~~ipi~AsGGIt-~e 252 (286)
T 1x1o_A 185 AVRRAKARAPHYLKVEV-EVRSLEELEEALEAGADLILLDNF----------PLEALREAVRRVGGRVPLEASGNMT-LE 252 (286)
T ss_dssp HHHHHHHHSCTTSCEEE-EESSHHHHHHHHHHTCSEEEEESC----------CHHHHHHHHHHHTTSSCEEEESSCC-HH
T ss_pred HHHHHHHhCCCCCEEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEEcCCC-HH
Confidence 4777787763 46666 667899999999999999999763 2244556666665579999999995 79
Q ss_pred HHHHHHHhCCCEEEEchHHH
Q 018919 273 DVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l 292 (349)
.+.+..+.|+|.+.+|+.+.
T Consensus 253 ni~~~a~tGvD~IsVgs~~~ 272 (286)
T 1x1o_A 253 RAKAAAEAGVDYVSVGALTH 272 (286)
T ss_dssp HHHHHHHHTCSEEECTHHHH
T ss_pred HHHHHHHcCCCEEEEcHHHc
Confidence 99999999999999988554
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=97.71 E-value=7.5e-05 Score=69.58 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=66.8
Q ss_pred HHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc---CCCcEEEecCC
Q 018919 194 EDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 268 (349)
Q Consensus 194 ~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI 268 (349)
+.++.+|+..+ .++++ .+.+.++++.+.++|+|+|.+++. ++ +.+.++++.++ .+++|.++|||
T Consensus 185 ~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~-------~~---~~l~~~v~~l~~~~~~~~I~ASGGI 253 (299)
T 2jbm_A 185 KAVRAARQAADFALKVEV-ECSSLQEAVQAAEAGADLVLLDNF-------KP---EELHPTATVLKAQFPSVAVEASGGI 253 (299)
T ss_dssp HHHHHHHHHHTTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC-------CH---HHHHHHHHHHHHHCTTSEEEEESSC
T ss_pred HHHHHHHHhCCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCC-------CH---HHHHHHHHHhhccCCCeeEEEECCC
Confidence 35777777764 46666 678899999999999999999762 23 44444444442 24999999999
Q ss_pred CCHHHHHHHHHhCCCEEEEchHH
Q 018919 269 RRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
+.+.+.+..+.|||.+.+|+.+
T Consensus 254 -t~~ni~~~~~aGaD~i~vGs~i 275 (299)
T 2jbm_A 254 -TLDNLPQFCGPHIDVISMGMLT 275 (299)
T ss_dssp -CTTTHHHHCCTTCCEEECTHHH
T ss_pred -CHHHHHHHHHCCCCEEEEChhh
Confidence 8899999999999999999955
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=63.89 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+...|+..+.+.+-+......+.. ++.+.++.+.. ++|+|+.||+.+++|+.+++..||++|++|++++.
T Consensus 133 ~~~i~~~~~~~~~~vli~~~~~~g~~~g~~-~~~i~~~~~~~--~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~ 208 (237)
T 3cwo_X 133 RDWVVEVEKRGAGEILLTSIDRDGTKSGYD-TEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 208 (237)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTCCSCCC-HHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred HHHHHHHhhcCCCeEEEEecCCCCcccccc-HHHHHHHHHhc--CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHc
Confidence 356778888899877765421111112333 67777776654 79999999999999999999999999999999974
|
| >1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.004 Score=55.51 Aligned_cols=164 Identities=18% Similarity=0.146 Sum_probs=107.6
Q ss_pred HHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchH
Q 018919 114 VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (349)
Q Consensus 114 ~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (349)
++++++..+++..+|+. ..|.+.+.+.++++.+.. +-+.|-+.+... | .
T Consensus 55 i~ei~~iv~G~VS~EV~-a~d~e~mi~eA~~L~~~~-~nv~IKIP~T~e---------------G--------------l 103 (230)
T 1vpx_A 55 VKEICDLVKGPVSAEVV-SLDYEGMVREARELAQIS-EYVVIKIPMTPD---------------G--------------I 103 (230)
T ss_dssp HHHHHHHHCSCEEEECS-CCSHHHHHHHHHHHHTTC-TTEEEEEESSHH---------------H--------------H
T ss_pred HHHHHhccCCcEEEEEc-cCCHHHHHHHHHHHHHhC-CCEEEEeCCCHH---------------H--------------H
Confidence 34455555567778876 467777777777777765 445665533200 0 3
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh---cCCCcEEEecCCCC
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 270 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~ 270 (349)
+.++.+.+. ++++-+-.+.+.+.|..|.++|++.|... =||-.+.+.+....+.++.+.. +.+..|++. ++++
T Consensus 104 ~Ai~~L~~e-GI~vNvTliFS~~QA~laa~AGa~~iSpF--VgRidd~g~dG~~~v~~i~~~~~~~~~~t~iL~A-S~r~ 179 (230)
T 1vpx_A 104 KAVKTLSAE-GIKTNVTLVFSPAQAILAAKAGATYVSPF--VGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIAA-SIRH 179 (230)
T ss_dssp HHHHHHHHT-TCCEEEEEECSHHHHHHHHHHTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHHTCSCEEEEB-SCCS
T ss_pred HHHHHHHHC-CCCEEEEEeCCHHHHHHHHhCCCeEEEec--cchhhhccccHHHHHHHHHHHHHHcCCCeEEEee-ccCC
Confidence 556666654 89999989999999999999999988663 2332222223344454444433 235566666 4999
Q ss_pred HHHHHHHHHhCCCEEEEchHHHHHHhhcC--HHHHHHHHHHHHH
Q 018919 271 GTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEMLRE 312 (349)
Q Consensus 271 ~~dv~kal~~GA~~V~ig~~~l~~~~~~G--~~gv~~~l~~l~~ 312 (349)
+.++.++..+|+|.+-+.-..+..+...+ .+|++.+.+.+.+
T Consensus 180 ~~~v~~~~l~G~d~~Tip~~~l~~l~~h~lt~~gv~~F~~d~~~ 223 (230)
T 1vpx_A 180 PMHVVEAALMGVDIVTMPFAVLEKLFKHPMTDLGIERFMEDWKK 223 (230)
T ss_dssp HHHHHHHHHHTCSEEEECHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEECCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998888765433 2455554444443
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00083 Score=60.08 Aligned_cols=110 Identities=19% Similarity=0.160 Sum_probs=78.7
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEE--E-
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILV--K- 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v--K- 210 (349)
++..+.++++.+++.|+.+|.++ . .++|+++|+.+++||+- |
T Consensus 34 ~~~~~~~~A~a~~~~Ga~~i~~~--~---------------------------------~~~i~~ir~~v~~Pvig~~k~ 78 (229)
T 3q58_A 34 KPEIVAAMAQAAASAGAVAVRIE--G---------------------------------IENLRTVRPHLSVPIIGIIKR 78 (229)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEE--S---------------------------------HHHHHHHGGGCCSCEEEECBC
T ss_pred CcchHHHHHHHHHHCCCcEEEEC--C---------------------------------HHHHHHHHHhcCCCEEEEEee
Confidence 45677888889999999998752 1 36899999999999872 3
Q ss_pred E------e--cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhH-HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC
Q 018919 211 G------V--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 211 ~------v--~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G 281 (349)
. . .+.++++.+.++|+|.|.+...... .|..+ +.+..+.+ . .+++++ .+++.+++.++..+|
T Consensus 79 ~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~----~p~~l~~~i~~~~~-~--g~~v~~--~v~t~eea~~a~~~G 149 (229)
T 3q58_A 79 DLTGSPVRITPYLQDVDALAQAGADIIAFDASFRS----RPVDIDSLLTRIRL-H--GLLAMA--DCSTVNEGISCHQKG 149 (229)
T ss_dssp CCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSC----CSSCHHHHHHHHHH-T--TCEEEE--ECSSHHHHHHHHHTT
T ss_pred cCCCCceEeCccHHHHHHHHHcCCCEEEECccccC----ChHHHHHHHHHHHH-C--CCEEEE--ecCCHHHHHHHHhCC
Confidence 1 1 3457899999999999987543211 12222 33443333 2 566665 689999999999999
Q ss_pred CCEEEE
Q 018919 282 ASGIFI 287 (349)
Q Consensus 282 A~~V~i 287 (349)
||.|.+
T Consensus 150 ad~Ig~ 155 (229)
T 3q58_A 150 IEFIGT 155 (229)
T ss_dssp CSEEEC
T ss_pred CCEEEe
Confidence 999975
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00096 Score=59.75 Aligned_cols=110 Identities=23% Similarity=0.276 Sum_probs=78.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEE--EE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILV--KG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v--K~ 211 (349)
++..+.++++.+++.|+.++.++ . .++|+++|+.+++||+- |-
T Consensus 34 ~~~~~~~~A~a~~~~Ga~~i~~~--~---------------------------------~~~i~~ir~~v~~Pvig~~k~ 78 (232)
T 3igs_A 34 KPEIVAAMALAAEQAGAVAVRIE--G---------------------------------IDNLRMTRSLVSVPIIGIIKR 78 (232)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEE--S---------------------------------HHHHHHHHTTCCSCEEEECBC
T ss_pred CcchHHHHHHHHHHCCCeEEEEC--C---------------------------------HHHHHHHHHhcCCCEEEEEee
Confidence 45677888889999999987642 1 36799999999999862 31
Q ss_pred -------e--cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhH-HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC
Q 018919 212 -------V--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 212 -------v--~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G 281 (349)
. .+.++++.+.++|+|.|.+...... .|..+ +.+..+.+ . ++++++ .+++.+++.++..+|
T Consensus 79 d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~----~p~~l~~~i~~~~~-~--g~~v~~--~v~t~eea~~a~~~G 149 (232)
T 3igs_A 79 DLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQ----RPVAVEALLARIHH-H--HLLTMA--DCSSVDDGLACQRLG 149 (232)
T ss_dssp CCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSC----CSSCHHHHHHHHHH-T--TCEEEE--ECCSHHHHHHHHHTT
T ss_pred cCCCcceEeCccHHHHHHHHHcCCCEEEECccccC----CHHHHHHHHHHHHH-C--CCEEEE--eCCCHHHHHHHHhCC
Confidence 1 3557899999999999988543211 12222 33333332 2 566665 589999999999999
Q ss_pred CCEEEE
Q 018919 282 ASGIFI 287 (349)
Q Consensus 282 A~~V~i 287 (349)
||.|.+
T Consensus 150 ad~Ig~ 155 (232)
T 3igs_A 150 ADIIGT 155 (232)
T ss_dssp CSEEEC
T ss_pred CCEEEE
Confidence 999975
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00035 Score=64.34 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=69.4
Q ss_pred HHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 194 EDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 194 ~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+.++++|+.. ..||.+ .+.+.++++.++++|+|.|.+.|- +.+.+.++++.+++++++.++||| +.+
T Consensus 187 ~Av~~ar~~~~~~~IeV-Ev~tl~ea~eAl~aGaD~I~LDn~----------~~~~l~~av~~~~~~v~ieaSGGI-t~~ 254 (287)
T 3tqv_A 187 KAVTKAKKLDSNKVVEV-EVTNLDELNQAIAAKADIVMLDNF----------SGEDIDIAVSIARGKVALEVSGNI-DRN 254 (287)
T ss_dssp HHHHHHHHHCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTTCEEEEESSC-CTT
T ss_pred HHHHHHHhhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHhhcCCceEEEECCC-CHH
Confidence 4477777653 467777 688999999999999999999763 235677777777668999999999 558
Q ss_pred HHHHHHHhCCCEEEEchHHH
Q 018919 273 DVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l 292 (349)
.+.++.+.|+|.+.+|....
T Consensus 255 ~i~~~a~tGVD~IsvGalt~ 274 (287)
T 3tqv_A 255 SIVAIAKTGVDFISVGAITK 274 (287)
T ss_dssp THHHHHTTTCSEEECSHHHH
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 88888889999999997543
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0017 Score=57.21 Aligned_cols=118 Identities=13% Similarity=0.094 Sum_probs=84.1
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEE---
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVK--- 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK--- 210 (349)
+++.+.+++++++++|++++.++ . .+.++.+++.+++|++..
T Consensus 21 ~~~~~~~~a~~~~~~Ga~~i~~~--~---------------------------------~~~i~~i~~~~~~pv~~~~~~ 65 (223)
T 1y0e_A 21 SSFIMSKMALAAYEGGAVGIRAN--T---------------------------------KEDILAIKETVDLPVIGIVKR 65 (223)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEE--S---------------------------------HHHHHHHHHHCCSCEEEECBC
T ss_pred CCccHHHHHHHHHHCCCeeeccC--C---------------------------------HHHHHHHHHhcCCCEEeeecc
Confidence 56778889999999999997542 1 256888999899998521
Q ss_pred E-----e---cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 211 G-----V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 211 ~-----v---~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
. . .+.+.++.+.++|+|.|.+...-.. +......+.+.++++.+ ++++++. ++.+.+++.++..+|+
T Consensus 66 ~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~~--~p~~~~~~~i~~~~~~~-~~~~v~~--~~~t~~e~~~~~~~G~ 140 (223)
T 1y0e_A 66 DYDHSDVFITATSKEVDELIESQCEVIALDATLQQ--RPKETLDELVSYIRTHA-PNVEIMA--DIATVEEAKNAARLGF 140 (223)
T ss_dssp CCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSC--CSSSCHHHHHHHHHHHC-TTSEEEE--ECSSHHHHHHHHHTTC
T ss_pred CCCccccccCCcHHHHHHHHhCCCCEEEEeeeccc--CcccCHHHHHHHHHHhC-CCceEEe--cCCCHHHHHHHHHcCC
Confidence 1 1 3467889999999999998532110 00012346677777765 3566665 6789999999999999
Q ss_pred CEEEEchHH
Q 018919 283 SGIFIGRPV 291 (349)
Q Consensus 283 ~~V~ig~~~ 291 (349)
|.++++.+.
T Consensus 141 d~i~~~~~g 149 (223)
T 1y0e_A 141 DYIGTTLHG 149 (223)
T ss_dssp SEEECTTTT
T ss_pred CEEEeCCCc
Confidence 999886543
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0019 Score=59.31 Aligned_cols=124 Identities=19% Similarity=0.115 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV- 212 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v- 212 (349)
.+.-...++.+.+.|++-|.+=+|... +... ++ .+-+. .++|+.+++..+ +..+|.|
T Consensus 99 ~e~K~~Ea~~Av~~GAdEIDmVinig~-------lk~~---~~----------g~~~~V~~eI~~v~~a~~-~~~lKVIl 157 (297)
T 4eiv_A 99 PDTVSLEAVGALKDGADEIECLIDWRR-------MNEN---VA----------DGESRIRLLVSEVKKVVG-PKTLKVVL 157 (297)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCTHH-------HHHC---HH----------HHHHHHHHHHHHHHHHHT-TSEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEeeeeHHH-------Hhcc---cC----------CcHHHHHHHHHHHHHHhc-CCceEEEE
Confidence 344445667788889999876555310 1100 00 01112 466888888874 5678887
Q ss_pred ----c-CHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh----------------------cCCCc
Q 018919 213 ----L-TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----------------------QGRIP 261 (349)
Q Consensus 213 ----~-~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~----------------------~~~ip 261 (349)
+ +.+. ++.+.++|+|+|..|..-+ .+.++.+.+.-+++.+ ++++-
T Consensus 158 Et~~Lt~~e~i~~A~~ia~~AGADFVKTSTGf~----~~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vg 233 (297)
T 4eiv_A 158 SGGELQGGDIISRAAVAALEGGADFLQTSSGLG----ATHATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIG 233 (297)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHHHHHHHHCC------------------CCE
T ss_pred ecccCCcHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHHHhccccccccccccccccccCCcee
Confidence 2 3332 3567899999999875322 1223344333333333 35799
Q ss_pred EEEe-cCCCCHHHHHHHHHhCCC
Q 018919 262 VFLD-GGVRRGTDVFKALALGAS 283 (349)
Q Consensus 262 via~-GGI~~~~dv~kal~~GA~ 283 (349)
|=++ ||||+.+|+.+++.+...
T Consensus 234 vKAs~GGIrt~e~A~~~i~~~~e 256 (297)
T 4eiv_A 234 IKIEVGDVHMAETADFLMQMIFE 256 (297)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHHH
Confidence 9999 999999999999995444
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0017 Score=59.51 Aligned_cols=116 Identities=21% Similarity=0.245 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHH
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAE 216 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~ 216 (349)
..+.++..++.|+++|-+-.+... | .. -.++++.+|+.+++||+.|.. .++.
T Consensus 81 p~~~A~~y~~~GA~~IsVltd~~~-----------f---------------~G-s~~~L~~ir~~v~lPVl~Kdfi~d~~ 133 (272)
T 3tsm_A 81 PPALAKAYEEGGAACLSVLTDTPS-----------F---------------QG-APEFLTAARQACSLPALRKDFLFDPY 133 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEECCSTT-----------T---------------CC-CHHHHHHHHHTSSSCEEEESCCCSTH
T ss_pred HHHHHHHHHHCCCCEEEEeccccc-----------c---------------CC-CHHHHHHHHHhcCCCEEECCccCCHH
Confidence 356788889999999865333211 0 00 147899999999999999984 6778
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 217 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
++..+.++|||+|.+...- + ....+..+.+....+ .+.++++ +++.+++.+++.+|++.|++..
T Consensus 134 qi~ea~~~GAD~VlLi~a~---L--~~~~l~~l~~~a~~l--Gl~~lve--vh~~eEl~~A~~~ga~iIGinn 197 (272)
T 3tsm_A 134 QVYEARSWGADCILIIMAS---V--DDDLAKELEDTAFAL--GMDALIE--VHDEAEMERALKLSSRLLGVNN 197 (272)
T ss_dssp HHHHHHHTTCSEEEEETTT---S--CHHHHHHHHHHHHHT--TCEEEEE--ECSHHHHHHHTTSCCSEEEEEC
T ss_pred HHHHHHHcCCCEEEEcccc---c--CHHHHHHHHHHHHHc--CCeEEEE--eCCHHHHHHHHhcCCCEEEECC
Confidence 8999999999999986431 1 223444444444444 5666655 4899999999999999999884
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00051 Score=63.46 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=68.4
Q ss_pred HHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 194 EDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 194 ~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+.++++|+.. ..||.| .+.+.++++.++++|+|.|.+.|- +.+.+.++++.+++++.+.++|||. .+
T Consensus 196 ~Av~~ar~~~p~~kIeV-Ev~tl~e~~eAl~aGaDiImLDn~----------s~~~l~~av~~~~~~v~leaSGGIt-~~ 263 (300)
T 3l0g_A 196 LAIQRLRKNLKNEYIAI-ECDNISQVEESLSNNVDMILLDNM----------SISEIKKAVDIVNGKSVLEVSGCVN-IR 263 (300)
T ss_dssp HHHHHHHHHSSSCCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTSSEEEEESSCC-TT
T ss_pred HHHHHHHHhCCCCCEEE-EECCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCceEEEEECCCC-HH
Confidence 4477777664 466766 578999999999999999999873 2366677777776789999999994 58
Q ss_pred HHHHHHHhCCCEEEEchHH
Q 018919 273 DVFKALALGASGIFIGRPV 291 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~ 291 (349)
.+.++.+.|+|.+.+|...
T Consensus 264 ~i~~~A~tGVD~IsvGalt 282 (300)
T 3l0g_A 264 NVRNIALTGVDYISIGCIT 282 (300)
T ss_dssp THHHHHTTTCSEEECGGGT
T ss_pred HHHHHHHcCCCEEEeCccc
Confidence 8888888999999999743
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00023 Score=64.10 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=56.3
Q ss_pred CHHHHHHHHHcCC----CEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 214 TAEDARIAVQAGA----AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 214 ~~~~a~~a~~~G~----d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+++.++...++|. -.|.+.. .|. ....+.+.++++.+. ++|+++.|||++++++.+++. |||+|.+|+
T Consensus 140 ~~~~~~~~a~~g~~~~~~~VYl~s-~G~-----~~~~~~i~~i~~~~~-~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGS 211 (240)
T 1viz_A 140 NMDDIVAYARVSELLQLPIFYLEY-SGV-----LGDIEAVKKTKAVLE-TSTLFYGGGIKDAETAKQYAE-HADVIVVGN 211 (240)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-TTS-----CCCHHHHHHHHHTCS-SSEEEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred CHHHHHHHHHhCcccCCCEEEEeC-CCc-----cChHHHHHHHHHhcC-CCCEEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence 3577777777774 6777654 232 335778888877642 689999999999999999888 999999999
Q ss_pred HHHH
Q 018919 290 PVVY 293 (349)
Q Consensus 290 ~~l~ 293 (349)
+++.
T Consensus 212 a~v~ 215 (240)
T 1viz_A 212 AVYE 215 (240)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9985
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=9.8e-05 Score=68.62 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=54.0
Q ss_pred HHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCC------CcEEEe
Q 018919 194 EDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR------IPVFLD 265 (349)
Q Consensus 194 ~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~------ipvia~ 265 (349)
+.++.+++..+ .++++ .+.+.++++.+.++|+|+|.+++.+ .+.+.++++.+++. ++|.++
T Consensus 187 ~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~~----------~~~l~~~v~~l~~~~~g~~~v~I~AS 255 (294)
T 3c2e_A 187 NAVKNARAVCGFAVKIEV-ECLSEDEATEAIEAGADVIMLDNFK----------GDGLKMCAQSLKNKWNGKKHFLLECS 255 (294)
T ss_dssp HHHHHHHHHHCTTSCEEE-ECSSSHHHHHHHHHTCSEEECCC-------------------------------CCEEEEE
T ss_pred HHHHHHHHhcCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhcccccCCCCeEEEEE
Confidence 35777777764 46666 5678899999999999999987621 23444544544333 999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 266 GGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 266 GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
||| +.+.+.+..+.|||.+.+|+.+
T Consensus 256 GGI-t~~ni~~~~~~GvD~i~vGs~i 280 (294)
T 3c2e_A 256 GGL-NLDNLEEYLCDDIDIYSTSSIH 280 (294)
T ss_dssp CCC-CC------CCCSCSEEECGGGT
T ss_pred CCC-CHHHHHHHHHcCCCEEEEechh
Confidence 999 8899999999999999999864
|
| >1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0067 Score=53.75 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=100.4
Q ss_pred HHHHhhCCCc--eEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch
Q 018919 115 EEVASTGPGI--RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (349)
Q Consensus 115 e~i~~~~~~~--~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (349)
.++++..+++ ..+|+. ..|.+.+.+.++++.+.. +-+.|-+.+... |
T Consensus 44 ~ei~~~v~G~~~VS~EV~-a~d~e~mi~eA~~l~~~~-~nv~IKIP~T~e---------------G-------------- 92 (220)
T 1l6w_A 44 PQLHEAMGGQGRLFAQVM-ATTAEGMVNDALKLRSII-ADIVVKVPVTAE---------------G-------------- 92 (220)
T ss_dssp HHHHHHTTTCSEEEEECC-CSSHHHHHHHHHHHHHHS-TTCEEEEECSHH---------------H--------------
T ss_pred HHHHHhcCCCceEEEEEc-cCCHHHHHHHHHHHHHhC-CCEEEEeCCCHH---------------H--------------
Confidence 3455555566 778876 467777777777777765 335555533200 0
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh---cCCCcEEEecCCC
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 269 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~ 269 (349)
.+.++.+.+. ++++-+-.+.+.+.|..|.++|++.|... =||-.+.+.+....+.++.+.. +.+..|++. +++
T Consensus 93 l~A~~~L~~~-GI~vn~TliFS~~QA~~aa~AGa~~iSpf--vgRidd~g~~G~~~i~~~~~~y~~~~~~t~il~A-S~r 168 (220)
T 1l6w_A 93 LAAIKMLKAE-GIPTLGTAVYGAAQGLLSALAGAEYVAPY--VNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLAA-SFK 168 (220)
T ss_dssp HHHHHHHHHH-TCCEEEEEECSHHHHHHHHHHTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEEB-CCS
T ss_pred HHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHCCCeEEEec--cchhhcccccHHHHHHHHHHHHHhcCCCeEEeec-ccC
Confidence 3556666654 89999999999999999999999988764 2232222323344555554433 225566665 599
Q ss_pred CHHHHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 270 RGTDVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 270 ~~~dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
++.++.++..+|+|.+-+.-..+..+..
T Consensus 169 ~~~~v~~~~l~G~d~~Tip~~~l~~l~~ 196 (220)
T 1l6w_A 169 TPRQALDCLLAGCESITLPLDVAQQMIS 196 (220)
T ss_dssp SHHHHHHHHHTTCSEEEECHHHHHHTTC
T ss_pred CHHHHHHHHHhCCCeEECCHHHHHHHHc
Confidence 9999999999999999999988887654
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.001 Score=62.12 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=68.6
Q ss_pred HHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 194 EDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 194 ~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+.++.+|+.. ..||.+ .+.+.++++.++++|+|.|.+.|. +.+.+.++++.++++++|.++|||. .+
T Consensus 220 ~Av~~ar~~~p~~kIeV-EVdtldea~eAl~aGaD~I~LDn~----------~~~~l~~av~~l~~~v~ieaSGGIt-~~ 287 (320)
T 3paj_A 220 QAISTAKQLNPGKPVEV-ETETLAELEEAISAGADIIMLDNF----------SLEMMREAVKINAGRAALENSGNIT-LD 287 (320)
T ss_dssp HHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTSSEEEEESSCC-HH
T ss_pred HHHHHHHHhCCCCeEEE-EECCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEECCCC-HH
Confidence 4477777765 356666 678999999999999999999763 2466777777776689999999996 57
Q ss_pred HHHHHHHhCCCEEEEchHH
Q 018919 273 DVFKALALGASGIFIGRPV 291 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~ 291 (349)
.+.+..+.|+|.+.+|+..
T Consensus 288 ~I~~~a~tGVD~isvGalt 306 (320)
T 3paj_A 288 NLKECAETGVDYISVGALT 306 (320)
T ss_dssp HHHHHHTTTCSEEECTHHH
T ss_pred HHHHHHHcCCCEEEECcee
Confidence 7877777999999999843
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00051 Score=63.57 Aligned_cols=85 Identities=26% Similarity=0.389 Sum_probs=66.2
Q ss_pred HHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 194 EDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 194 ~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+.++.+|+.. ..||.+ .+.+.++++.++++|+|.|.+.|. +.+.+.++++.+.+++++.++|||. .+
T Consensus 198 ~Av~~~r~~~p~~~ieV-Evdtlde~~eAl~aGaD~I~LDn~----------~~~~l~~av~~i~~~v~ieaSGGI~-~~ 265 (298)
T 3gnn_A 198 EALDAAFALNAEVPVQI-EVETLDQLRTALAHGARSVLLDNF----------TLDMMRDAVRVTEGRAVLEVSGGVN-FD 265 (298)
T ss_dssp HHHHHHHHHC--CCCEE-EESSHHHHHHHHHTTCEEEEEESC----------CHHHHHHHHHHHTTSEEEEEESSCS-TT
T ss_pred HHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEEcCCC-HH
Confidence 4477777765 355554 478999999999999999999763 2355666666666689999999994 57
Q ss_pred HHHHHHHhCCCEEEEchH
Q 018919 273 DVFKALALGASGIFIGRP 290 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~ 290 (349)
.+.+..+.|+|.+.+|+.
T Consensus 266 ~i~~~a~tGVD~isvG~l 283 (298)
T 3gnn_A 266 TVRAIAETGVDRISIGAL 283 (298)
T ss_dssp THHHHHHTTCSEEECGGG
T ss_pred HHHHHHHcCCCEEEECCe
Confidence 888888899999999984
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00019 Score=62.22 Aligned_cols=89 Identities=11% Similarity=0.139 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCcEEEEEec----CHH-HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCC
Q 018919 194 EDVKWLQTITKLPILVKGVL----TAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 268 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~----~~~-~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 268 (349)
..++..++ .++..+-.... +.+ ..+...+...|++-+- . |+. ...+.++++.+ ++|||+.|+|
T Consensus 92 ~~i~~Ak~-~gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEiL-------P-Gi~-p~iI~~i~~~~--~~PiIaGGlI 159 (192)
T 3kts_A 92 NAIMKAKQ-HKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELL-------P-GII-PEQVQKMTQKL--HIPVIAGGLI 159 (192)
T ss_dssp HHHHHHHH-TTCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEEE-------C-TTC-HHHHHHHHHHH--CCCEEEESSC
T ss_pred HHHHHHHH-CCCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEEC-------C-chh-HHHHHHHHHhc--CCCEEEECCc
Confidence 34555554 36666555431 222 2444556677887652 1 222 26788888877 8999999999
Q ss_pred CCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 269 RRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
++.+|+.+|+.+||++|..++..+|.
T Consensus 160 ~~~edv~~al~aGA~aVsTs~~~LW~ 185 (192)
T 3kts_A 160 ETSEQVNQVIASGAIAVTTSNKHLWE 185 (192)
T ss_dssp CSHHHHHHHHTTTEEEEEECCGGGGT
T ss_pred CCHHHHHHHHHcCCeEEEeCCHHHhC
Confidence 99999999999999999999999883
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00081 Score=60.17 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 193 DEDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 193 ~~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.+.|+++++.++ .-+....+.+.++++.+.++|+|+|+..+ .+.+.+..+++. ++|++. |+.|+
T Consensus 73 ~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~----------~~~~vi~~~~~~---gi~~ip--Gv~Tp 137 (232)
T 4e38_A 73 VEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPG----------FNPNTVRACQEI---GIDIVP--GVNNP 137 (232)
T ss_dssp HHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSS----------CCHHHHHHHHHH---TCEEEC--EECSH
T ss_pred HHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCC----------CCHHHHHHHHHc---CCCEEc--CCCCH
Confidence 678999998874 44555567899999999999999996421 123344433332 688886 69999
Q ss_pred HHHHHHHHhCCCEEEE
Q 018919 272 TDVFKALALGASGIFI 287 (349)
Q Consensus 272 ~dv~kal~~GA~~V~i 287 (349)
+++.+|+++|||.|-+
T Consensus 138 tEi~~A~~~Gad~vK~ 153 (232)
T 4e38_A 138 STVEAALEMGLTTLKF 153 (232)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999999987
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0012 Score=62.40 Aligned_cols=129 Identities=15% Similarity=0.137 Sum_probs=82.6
Q ss_pred CeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcc
Q 018919 102 TIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 181 (349)
Q Consensus 102 ~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~ 181 (349)
.|.+++.++..+.++++....+..|+|+|...+++.+.+.++++++.|+.. .+++. .+
T Consensus 47 ~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~~~~~~~i~~~~~~g~~v-~v~~g-----~~---------------- 104 (336)
T 1ypf_A 47 LPVVPANMQTIIDERIATYLAENNYFYIMHRFQPEKRISFIRDMQSRGLIA-SISVG-----VK---------------- 104 (336)
T ss_dssp SSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSGGGHHHHHHHHHHTTCCC-EEEEC-----CS----------------
T ss_pred CcEEECCCCCCChHHHHHHHHhCCCEEEecCCCCHHHHHHHHHHHhcCCeE-EEeCC-----CC----------------
Confidence 466777777777777754322346788888777777777777776655421 11110 00
Q ss_pred cccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcC--CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCC
Q 018919 182 KNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGR 259 (349)
Q Consensus 182 ~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G--~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ 259 (349)
.+.+ +.++.+.++| ++.|.+....| .....++.+.++++.. +
T Consensus 105 -----------~~~~-------------------~~a~~~~~~g~~~~~i~i~~~~G----~~~~~~~~i~~lr~~~--~ 148 (336)
T 1ypf_A 105 -----------EDEY-------------------EFVQQLAAEHLTPEYITIDIAHG----HSNAVINMIQHIKKHL--P 148 (336)
T ss_dssp -----------HHHH-------------------HHHHHHHHTTCCCSEEEEECSSC----CSHHHHHHHHHHHHHC--T
T ss_pred -----------HHHH-------------------HHHHHHHhcCCCCCEEEEECCCC----CcHHHHHHHHHHHHhC--C
Confidence 0111 3356677888 88887743111 1234577888888876 3
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 260 IPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 260 ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++..|.|.+.+++.++..+|||+|.++
T Consensus 149 ~~~vi~G~v~s~e~A~~a~~aGad~Ivvs 177 (336)
T 1ypf_A 149 ESFVIAGNVGTPEAVRELENAGADATKVG 177 (336)
T ss_dssp TSEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred CCEEEECCcCCHHHHHHHHHcCCCEEEEe
Confidence 34444566999999999999999999993
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0045 Score=59.38 Aligned_cols=120 Identities=18% Similarity=0.095 Sum_probs=90.3
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK 210 (349)
.+++.+.+.++++.+.|++++.+++++ +.++ .+.++.+|+.+ +.|+.+.
T Consensus 146 ~~~e~~~~~a~~~~~~Gf~~iKik~g~-----------------------------~~~~~~e~v~avr~a~gd~~l~vD 196 (384)
T 2pgw_A 146 ETAEELARDAAVGHAQGERVFYLKVGR-----------------------------GEKLDLEITAAVRGEIGDARLRLD 196 (384)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECCS-----------------------------CHHHHHHHHHHHHTTSTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECcCC-----------------------------CHHHHHHHHHHHHHHcCCcEEEEe
Confidence 467777788888889999999988753 1122 46799999888 5788776
Q ss_pred Ee--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CC
Q 018919 211 GV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-AS 283 (349)
Q Consensus 211 ~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~ 283 (349)
.- -+.++ ++.+.+.|++.|-= . ..+..++.+.++++.+ ++||++++.+.+..|+.++++.| +|
T Consensus 197 ~n~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~~~~~~~~l~~~~--~iPI~~de~i~~~~~~~~~i~~~~~d 266 (384)
T 2pgw_A 197 ANEGWSVHDAINMCRKLEKYDIEFIEQ-------P-TVSWSIPAMAHVREKV--GIPIVADQAAFTLYDVYEICRQRAAD 266 (384)
T ss_dssp CTTCCCHHHHHHHHHHHGGGCCSEEEC-------C-SCTTCHHHHHHHHHHC--SSCEEESTTCCSHHHHHHHHHTTCCS
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCEEeC-------C-CChhhHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHcCCCC
Confidence 42 34444 45567789988741 1 1234678888888877 79999999999999999999976 89
Q ss_pred EEEEchHH
Q 018919 284 GIFIGRPV 291 (349)
Q Consensus 284 ~V~ig~~~ 291 (349)
.|++....
T Consensus 267 ~v~ik~~~ 274 (384)
T 2pgw_A 267 MICIGPRE 274 (384)
T ss_dssp EEEECHHH
T ss_pred EEEEcchh
Confidence 99997654
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0014 Score=65.78 Aligned_cols=81 Identities=16% Similarity=0.088 Sum_probs=60.4
Q ss_pred ecCHHHHHHHHHcC---CCEEEEecCCCCC--CCC--chhhHHHHHHHHHHhc----CCCcEEEecCCCCHHHHHHHHH-
Q 018919 212 VLTAEDARIAVQAG---AAGIIVSNHGARQ--LDY--VPATIMALEEVVKATQ----GRIPVFLDGGVRRGTDVFKALA- 279 (349)
Q Consensus 212 v~~~~~a~~a~~~G---~d~I~v~~~gg~~--~~~--~~~~~~~l~~i~~~~~----~~ipvia~GGI~~~~dv~kal~- 279 (349)
+.++++++.+.+.| +|+|.++.-..+. .+. .+..++.+.++.+.+. .++|+++.||| +.+++.+.++
T Consensus 115 ~ht~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~ 193 (540)
T 3nl6_A 115 VGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQ 193 (540)
T ss_dssp ECSHHHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHh
Confidence 47899999999999 9999986422221 111 1223566666666541 37999999999 7899999998
Q ss_pred -------hCCCEEEEchHHHH
Q 018919 280 -------LGASGIFIGRPVVY 293 (349)
Q Consensus 280 -------~GA~~V~ig~~~l~ 293 (349)
.||++|.++++++.
T Consensus 194 ~~~~g~~~GadgvAVvsaI~~ 214 (540)
T 3nl6_A 194 CVSSNGKRSLDGICVVSDIIA 214 (540)
T ss_dssp CBCTTSSCBCSCEEESHHHHT
T ss_pred hcccccccCceEEEEeHHHhc
Confidence 89999999999873
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0011 Score=59.13 Aligned_cols=40 Identities=30% Similarity=0.526 Sum_probs=35.2
Q ss_pred HHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 254 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 254 ~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+....+++|+..|||.++.|+..+...|+|++.||++++.
T Consensus 171 r~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~ 210 (225)
T 1hg3_A 171 KKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTK 210 (225)
T ss_dssp HHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHC
Confidence 3334579999999999999998888899999999999986
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00025 Score=65.40 Aligned_cols=86 Identities=23% Similarity=0.204 Sum_probs=66.1
Q ss_pred HHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC---CCcEEEecCC
Q 018919 194 EDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGV 268 (349)
Q Consensus 194 ~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~---~ipvia~GGI 268 (349)
..++.+|+..+ .+|.+ .+.+.++++.++++|+|.|.+.|- +.+.+.++++.+++ ++++.++|||
T Consensus 181 ~av~~ar~~~~~~~~I~V-EV~tleea~eA~~aGaD~I~LDn~----------~~e~l~~av~~l~~~~~~v~ieASGGI 249 (285)
T 1o4u_A 181 RAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDNL----------SPEEVKDISRRIKDINPNVIVEVSGGI 249 (285)
T ss_dssp HHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred HHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCceEEEECCC
Confidence 34777777653 56776 578899999999999999999762 23445555554433 7999999999
Q ss_pred CCHHHHHHHHHhCCCEEEEchHH
Q 018919 269 RRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
. .+.+.+..+.|+|.+.+|+..
T Consensus 250 t-~eni~~~a~tGVD~IsvGslt 271 (285)
T 1o4u_A 250 T-EENVSLYDFETVDVISSSRLT 271 (285)
T ss_dssp C-TTTGGGGCCTTCCEEEEGGGT
T ss_pred C-HHHHHHHHHcCCCEEEEeHHH
Confidence 4 588888888999999999854
|
| >1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.006 Score=54.20 Aligned_cols=147 Identities=19% Similarity=0.102 Sum_probs=99.6
Q ss_pred HHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHH
Q 018919 116 EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDED 195 (349)
Q Consensus 116 ~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (349)
++++..+++..+|+. ..|.+.+.+.++++.+.. +-+.|-+.+... | .+.
T Consensus 54 ~i~~~v~G~VS~EV~-a~d~e~~i~eA~~l~~~~-~nv~IKIP~T~e---------------G--------------l~A 102 (223)
T 1wx0_A 54 AICETVGGPVSAEVT-ALEAEAMVAEGRRLAAIH-PNIVVKLPTTEE---------------G--------------LKA 102 (223)
T ss_dssp HHHHHHTSCEEEECC-CSSHHHHHHHHHHHHHHC-TTEEEEEESSHH---------------H--------------HHH
T ss_pred HHHhccCCcEEEEEe-cCCHHHHHHHHHHHHhhC-CCEEEEeCCCHH---------------H--------------HHH
Confidence 344444566778876 467777777777777765 445665533200 0 345
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHH
Q 018919 196 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGT 272 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~ 272 (349)
++.+.+. ++++-+-.+.+.+.+..|.++|++.|... =||-.+.+.+....+.++.+.. +.+..|++. ++|++.
T Consensus 103 ~~~L~~~-GI~vN~TliFS~~Qa~~aa~AGa~~iSpF--VgRidd~g~~G~~~v~~i~~~~~~~~~~t~vl~A-S~r~~~ 178 (223)
T 1wx0_A 103 CKRLSAE-GIKVNMTLIFSANQALLAARAGASYVSPF--LGRVDDISWDGGELLREIVEMIQVQDLPVKVIAA-SIRHPR 178 (223)
T ss_dssp HHHHHHT-TCCEEEEEECSHHHHHHHHHTTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEEB-CCCSHH
T ss_pred HHHHHHC-CCcEEEEEeCCHHHHHHHHHCCCeEEEec--cchHhhcCCCHHHHHHHHHHHHHHcCCCeEEeec-ccCCHH
Confidence 6666554 89999999999999999999999987663 2332223333445555555443 224556655 699999
Q ss_pred HHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 273 DVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
++.++..+|+|.+-+.-..+..+..
T Consensus 179 ~v~~~~l~G~d~~Tip~~~l~~l~~ 203 (223)
T 1wx0_A 179 HVTEAALLGADIATMPHAVFKQLLK 203 (223)
T ss_dssp HHHHHHHTTCSEEEECHHHHHHHTC
T ss_pred HHHHHHHhCCCEEECCHHHHHHHHc
Confidence 9999999999999999888877654
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00093 Score=61.63 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=64.8
Q ss_pred HHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC---CCcEEEecCCC
Q 018919 194 EDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVR 269 (349)
Q Consensus 194 ~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~---~ipvia~GGI~ 269 (349)
+.++.+|+..+ .||.+ .+.+.++++.++++|+|.|.+.|- +.+.+.++++.+++ ++++.++|||
T Consensus 183 ~av~~ar~~~~~~~I~V-ev~t~eea~eal~aGaD~I~LDn~----------~~~~~~~~v~~l~~~~~~v~ieaSGGI- 250 (284)
T 1qpo_A 183 DALRAVRNAAPDLPCEV-EVDSLEQLDAVLPEKPELILLDNF----------AVWQTQTAVQRRDSRAPTVMLESSGGL- 250 (284)
T ss_dssp HHHHHHHHHCTTSCEEE-EESSHHHHHHHGGGCCSEEEEETC----------CHHHHHHHHHHHHHHCTTCEEEEESSC-
T ss_pred HHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC-
Confidence 34777777652 36766 677899999999999999999762 12334444444333 7999999999
Q ss_pred CHHHHHHHHHhCCCEEEEchHH
Q 018919 270 RGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 270 ~~~dv~kal~~GA~~V~ig~~~ 291 (349)
+.+.+.+..+.|+|.+.+|+..
T Consensus 251 t~~~i~~~a~tGVD~isvG~l~ 272 (284)
T 1qpo_A 251 SLQTAATYAETGVDYLAVGALT 272 (284)
T ss_dssp CTTTHHHHHHTTCSEEECGGGT
T ss_pred CHHHHHHHHhcCCCEEEECHHH
Confidence 5689989999999999999854
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0017 Score=61.91 Aligned_cols=89 Identities=22% Similarity=0.266 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCcEEEEEec-CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 193 DEDVKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~-~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.+.++++++...+|+.+.... +.+.++.+.++|+|.|++....|. .....+.+.++++.+ ++||++ |.+.+.
T Consensus 84 ~~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~G~----~~~~~~~i~~i~~~~--~~~Viv-g~v~t~ 156 (361)
T 3khj_A 84 VNEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGH----SLNIIRTLKEIKSKM--NIDVIV-GNVVTE 156 (361)
T ss_dssp HHHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSCCS----BHHHHHHHHHHHHHC--CCEEEE-EEECSH
T ss_pred HHHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCCCC----cHHHHHHHHHHHHhc--CCcEEE-ccCCCH
Confidence 466888888778898876643 378899999999999988532221 122346677777766 688887 678999
Q ss_pred HHHHHHHHhCCCEEEEc
Q 018919 272 TDVFKALALGASGIFIG 288 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig 288 (349)
+++.++..+|||+|.+|
T Consensus 157 e~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 157 EATKELIENGADGIKVG 173 (361)
T ss_dssp HHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCcCEEEEe
Confidence 99999999999999995
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00075 Score=60.89 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=59.5
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+.|+...+.|+|.+.+-.-.+. ..+.+...+.+.++++.+ .+|+...|||++-+|+.++|.+||+-|.+|+..+
T Consensus 35 ~~a~~~~~~gad~lhvvDld~a-~~~~~~~~~~i~~i~~~~--~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~ 108 (243)
T 4gj1_A 35 KKFKEYEKAGAKELHLVDLTGA-KDPSKRQFALIEKLAKEV--SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAI 108 (243)
T ss_dssp HHHHHHHHHTCCEEEEEEHHHH-HCGGGCCHHHHHHHHHHC--CSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTT
T ss_pred HHHHHHHHCCCCEEEEEecCcc-cccchhHHHHHHHHHHhc--CCCeEeccccccHHHHHHHHHcCCCEEEEccccc
Confidence 6788889999999987532110 123345678888888877 7999999999999999999999999999999654
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0036 Score=54.22 Aligned_cols=102 Identities=16% Similarity=0.201 Sum_probs=71.8
Q ss_pred HHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCC
Q 018919 97 ASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL 175 (349)
Q Consensus 97 a~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~ 175 (349)
+...+..+++|+... -+..+.. +...+|=+.--|.......++.+.+...|++++ +..+ +
T Consensus 78 ~~~~~pdGIIsTk~~----~i~~Ak~~gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEi-LPGi--------------~ 138 (192)
T 3kts_A 78 CTEICPDGIISTRGN----AIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIEL-LPGI--------------I 138 (192)
T ss_dssp HHTTCCSEEEESCHH----HHHHHHHTTCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEE-ECTT--------------C
T ss_pred HhCCCCCEEEeCcHH----HHHHHHHCCCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEE-CCch--------------h
Confidence 345678888876532 2222211 444444333467666677788888888999886 2111 0
Q ss_pred CCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEecC
Q 018919 176 PPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 176 p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~~ 234 (349)
-+.++++++.+++||++.| +.+.|++..|+++||++|+.|+.
T Consensus 139 -----------------p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~ 181 (192)
T 3kts_A 139 -----------------PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNK 181 (192)
T ss_dssp -----------------HHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEECCG
T ss_pred -----------------HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCH
Confidence 2679999999999999988 57999999999999999999874
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0051 Score=58.69 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=89.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK 210 (349)
+++.+.+.++++.+.|++++.++++++ +++. .+.++.+|+.+ +++|.++
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~----------------------------~~~~~~e~v~avr~a~G~d~~l~vD 197 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRP----------------------------DLKEDVDRVSALREHLGDSFPLMVD 197 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS----------------------------SHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC----------------------------CHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 677777888888899999999987642 1222 56799999887 6889887
Q ss_pred Ee--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CC
Q 018919 211 GV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-AS 283 (349)
Q Consensus 211 ~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~ 283 (349)
.- -+.++ ++.+.+.|++.|-= ...+..++.+.++++.+ ++||++++.+.+..|+.++++.| +|
T Consensus 198 an~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPI~~dE~~~~~~~~~~~i~~~~~d 267 (371)
T 2ovl_A 198 ANMKWTVDGAIRAARALAPFDLHWIEE--------PTIPDDLVGNARIVRES--GHTIAGGENLHTLYDFHNAVRAGSLT 267 (371)
T ss_dssp CTTCSCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHHH--CSCEEECTTCCSHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhhC--CCCEEeCCCCCCHHHHHHHHHcCCCC
Confidence 53 34444 45566788887631 11234577888888877 79999999999999999999976 89
Q ss_pred EEEEch
Q 018919 284 GIFIGR 289 (349)
Q Consensus 284 ~V~ig~ 289 (349)
.|++..
T Consensus 268 ~v~ik~ 273 (371)
T 2ovl_A 268 LPEPDV 273 (371)
T ss_dssp EECCCT
T ss_pred EEeeCc
Confidence 999865
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00084 Score=59.44 Aligned_cols=86 Identities=21% Similarity=0.196 Sum_probs=61.1
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHhCCCEEEEchHHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~-~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
+.++.+.++|+|+++++.+ ..+.+..+++.++ + .++.++||+. +.+..+++..|||.+.+||+++.+
T Consensus 119 ~~a~~a~~~G~~GvV~sat----------~~~e~~~ir~~~~-~-f~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~I~~a 186 (215)
T 3ve9_A 119 YLREVARRVNPKGFVAPAT----------RPSMISRVKGDFP-D-KLVISPGVGTQGAKPGIALCHGADYEIVGRSVYQS 186 (215)
T ss_dssp HHHHHHHHHCCSEEECCTT----------SHHHHHHHHHHCT-T-SEEEECCTTSTTCCTTHHHHTTCSEEEECHHHHTS
T ss_pred HHHHHHHHcCCCceeeCCC----------CHHHHHHHHHhCC-C-cEEEcCCCCcCcCCHHHHHHcCCCEEEeCHHHcCC
Confidence 5578888999999988532 1345666777664 4 6889999985 236777889999999999999852
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHH
Q 018919 295 LAAEGEKGVRRVLEMLREEFELAMA 319 (349)
Q Consensus 295 ~~~~G~~gv~~~l~~l~~el~~~m~ 319 (349)
+.....++.++++++....
T Consensus 187 ------~dp~~a~~~i~~~i~~~~~ 205 (215)
T 3ve9_A 187 ------ADPVRKLEEIVRSQEEVLS 205 (215)
T ss_dssp ------SSHHHHHHHHHHHHHHHC-
T ss_pred ------CCHHHHHHHHHHHHHHHHH
Confidence 2233456777777766543
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0068 Score=53.79 Aligned_cols=110 Identities=18% Similarity=0.176 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEE--E-E--
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILV--K-G-- 211 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v--K-~-- 211 (349)
...+.++.+.+.|++++.++ . .+.++.+|+.+++|++- | .
T Consensus 37 ~~~~~a~~~~~~G~~~i~~~--~---------------------------------~~~i~~i~~~~~~p~i~~~~~~~~ 81 (234)
T 1yxy_A 37 IMPLMAKAAQEAGAVGIRAN--S---------------------------------VRDIKEIQAITDLPIIGIIKKDYP 81 (234)
T ss_dssp SHHHHHHHHHHHTCSEEEEE--S---------------------------------HHHHHHHHTTCCSCEEEECBCCCT
T ss_pred hHHHHHHHHHHCCCcEeecC--C---------------------------------HHHHHHHHHhCCCCEEeeEcCCCC
Confidence 66788899999999998653 2 14688888888999841 1 1
Q ss_pred -----e-cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 018919 212 -----V-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 285 (349)
Q Consensus 212 -----v-~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V 285 (349)
+ .+.+.++.+.++|+|.|.+...-....+ +....+.+.++++..+ +++|+. ++++.+++.++...|||.|
T Consensus 82 ~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~~~~~-~~~~~~~i~~i~~~~~-~~~v~~--~~~t~~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 82 PQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHD-GLDIASFIRQVKEKYP-NQLLMA--DISTFDEGLVAHQAGIDFV 157 (234)
T ss_dssp TSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTT-CCCHHHHHHHHHHHCT-TCEEEE--ECSSHHHHHHHHHTTCSEE
T ss_pred ccccccCChHHHHHHHHHcCCCEEEEcccccCCCC-CccHHHHHHHHHHhCC-CCeEEE--eCCCHHHHHHHHHcCCCEE
Confidence 1 2458899999999999988643211010 1123567777777653 566554 6899999999999999999
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0026 Score=60.49 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=88.9
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|++++.++++++ +++. .+.++.+|+.+ ++|+.+
T Consensus 143 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~----------------------------~~~~~~e~v~avr~a~g~~~~l~v 194 (359)
T 1mdl_A 143 DGVKLATERAVTAAELGFRAVKTRIGYP----------------------------ALDQDLAVVRSIRQAVGDDFGIMV 194 (359)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCS----------------------------SHHHHHHHHHHHHHHHCSSSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC----------------------------CHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4566677778888889999999987642 1222 56799999887 688888
Q ss_pred EEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
+.- -+.++ ++.+.+.|++.|-= ...+..++.+.++++.+ ++||++++.+.+..|+.+++..| +
T Consensus 195 Dan~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPI~~de~~~~~~~~~~~i~~~~~ 264 (359)
T 1mdl_A 195 DYNQSLDVPAAIKRSQALQQEGVTWIEE--------PTLQHDYEGHQRIQSKL--NVPVQMGENWLGPEEMFKALSIGAC 264 (359)
T ss_dssp ECTTCSCHHHHHHHHHHHHHHTCSCEEC--------CSCTTCHHHHHHHHHTC--SSCEEECTTCCSHHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCeEEC--------CCChhhHHHHHHHHHhC--CCCEEeCCCCCCHHHHHHHHHcCCC
Confidence 753 34444 46677889987731 11234577888888766 79999999999999999999976 8
Q ss_pred CEEEEch
Q 018919 283 SGIFIGR 289 (349)
Q Consensus 283 ~~V~ig~ 289 (349)
|.|++..
T Consensus 265 d~v~ik~ 271 (359)
T 1mdl_A 265 RLAMPDA 271 (359)
T ss_dssp SEECCBT
T ss_pred CEEeecc
Confidence 9999964
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00056 Score=62.26 Aligned_cols=120 Identities=16% Similarity=0.135 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~ 217 (349)
.+.++.++++|+.++.+-..||. |+|..- |+ .+ +.+ .++|+.+++.+++||+.|.. ....+
T Consensus 21 ~eqa~iae~aGa~av~~l~~~p~------d~r~~g----Gv-~R----m~d---p~~I~~I~~aVsIPVm~k~righ~~E 82 (291)
T 3o07_A 21 PEQAKIAEKSGACAVMALESIPA------DMRKSG----KV-CR----MSD---PKMIKDIMNSVSIPVMAKVRIGHFVE 82 (291)
T ss_dssp HHHHHHHHHHTCSEEEECSSCHH------HHHTTT----CC-CC----CCC---HHHHHHHHTTCSSCEEEEEETTCHHH
T ss_pred HHHHHHHHHhCchhhhhccCCCc------hhhhcC----Cc-cc----cCC---HHHHHHHHHhCCCCeEEEEecCcHHH
Confidence 45788899999999998888873 333111 10 00 112 47899999999999999986 46789
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
|+.+.++|+|.|.-+. .-+. .+....+.+. ..++|+++ |+++-++++.++..||+.|..
T Consensus 83 Aqilea~GaD~IDese-vltp-------ad~~~~I~k~-~f~vpfv~--~~~~l~EAlrri~eGA~mIrT 141 (291)
T 3o07_A 83 AQIIEALEVDYIDESE-VLTP-------ADWTHHIEKD-KFKVPFVC--GAKDLGEALRRINEGAAMIRT 141 (291)
T ss_dssp HHHHHHTTCSEEEEET-TSCC-------SCSSCCCCGG-GCSSCEEE--EESSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCEEeccc-CCCH-------HHHHHHhhhh-cCCCcEEe--eCCCHHHHHHHHHCCCCEEEe
Confidence 9999999999996552 1111 0111111111 01567774 589999999999999998875
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0049 Score=56.54 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~ 211 (349)
+.+.+.+.++.+.++|++++++..=.+ |... .+.++++.+.. ++++.+--
T Consensus 109 E~~~M~~dI~~~~~~GAdGvVfG~L~~----------------------------dg~iD~~~~~~Li~~a~~l~vTFHR 160 (287)
T 3iwp_A 109 EIEVMKADIRLAKLYGADGLVFGALTE----------------------------DGHIDKELCMSLMAICRPLPVTFHR 160 (287)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCBCT----------------------------TSCBCHHHHHHHHHHHTTSCEEECG
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeeCC----------------------------CCCcCHHHHHHHHHHcCCCcEEEEC
Confidence 345577888889999999998764221 1112 34455554443 56666543
Q ss_pred e----cCHH-HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCCEE
Q 018919 212 V----LTAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGI 285 (349)
Q Consensus 212 v----~~~~-~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~~V 285 (349)
. .++. -.+.+.++|+|.|-.|+. .......++.|.++.+..+++++|++.|||+. +.+.+.++ +|++.+
T Consensus 161 AFD~~~d~~~Ale~Li~lGvdrILTSG~----~~~a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~-~Ni~~l~~~tG~~~~ 235 (287)
T 3iwp_A 161 AFDMVHDPMAALETLLTLGFERVLTSGC----DSSALEGLPLIKRLIEQAKGRIVVMPGGGITD-RNLQRILEGSGATEF 235 (287)
T ss_dssp GGGGCSCHHHHHHHHHHHTCSEEEECTT----SSSTTTTHHHHHHHHHHHTTSSEEEECTTCCT-TTHHHHHHHHCCSEE
T ss_pred chhccCCHHHHHHHHHHcCCCEEECCCC----CCChHHhHHHHHHHHHHhCCCCEEEECCCcCH-HHHHHHHHhhCCCEE
Confidence 2 2343 356788889999988542 12234456777777777666899999999986 67777776 899887
Q ss_pred EEc
Q 018919 286 FIG 288 (349)
Q Consensus 286 ~ig 288 (349)
=..
T Consensus 236 H~S 238 (287)
T 3iwp_A 236 HCS 238 (287)
T ss_dssp EEC
T ss_pred eEC
Confidence 654
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=97.08 E-value=0.02 Score=50.95 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=49.7
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEEEEchHHHHHH
Q 018919 217 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
.++.+.++|+++++++.+ ..+.+.++++.++.+.++ .++||+-. .+. ++++.|||.+.+||+++.+
T Consensus 142 ~a~~a~~~G~~GvV~~at----------~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~a- 208 (228)
T 3m47_A 142 IARMGVDLGVKNYVGPST----------RPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYLA- 208 (228)
T ss_dssp HHHHHHHTTCCEEECCSS----------CHHHHHHHHHHHCSSSEE-EECC----------CGGGTCSEEEECHHHHTS-
T ss_pred HHHHHHHhCCcEEEECCC----------ChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhCC-
Confidence 467788999999987431 134566777776544655 78888753 367 8889999999999997632
Q ss_pred hhcCHHHHHHHHHHHHHHHHH
Q 018919 296 AAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 296 ~~~G~~gv~~~l~~l~~el~~ 316 (349)
+.....++.++++++.
T Consensus 209 -----~dp~~a~~~~~~~~~~ 224 (228)
T 3m47_A 209 -----DNPAAAAAGAIESIKD 224 (228)
T ss_dssp -----SCHHHHHHHHHHHC--
T ss_pred -----CCHHHHHHHHHHHHHH
Confidence 1223455566665543
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0017 Score=58.03 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=48.5
Q ss_pred cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 224 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 224 ~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.|...|.+-. .|. +...+.+.++++.. .++|+++.|||++++++.+++. |||+|.+|+++..
T Consensus 158 ~g~~~vY~e~-sG~-----~g~~~~v~~ir~~~-~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~ 219 (235)
T 3w01_A 158 YRLPVMYIEY-SGI-----YGDVSKVQAVSEHL-TETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYK 219 (235)
T ss_dssp TCCSEEEEEC-TTS-----CCCHHHHHHHHTTC-SSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHH
T ss_pred cCCCEEEEec-CCC-----cCCHHHHHHHHHhc-CCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceec
Confidence 4788888755 332 12467777777654 2689999999999999987776 9999999999985
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0024 Score=56.74 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.++|+|+++++.+ ..+.+..+++.++ + -++.++||+-. .+..+++..|||.+.||||++.
T Consensus 125 ~~~a~~a~~~g~~GvV~sat----------~p~e~~~ir~~~~-~-~~~vtPGI~~~g~tp~~a~~~Gad~iVVGR~I~~ 192 (222)
T 4dbe_A 125 DYIKNVIREISPKGIVVGGT----------KLDHITQYRRDFE-K-MTIVSPGMGSQGGSYGDAVCAGADYEIIGRSIYN 192 (222)
T ss_dssp HHHHHHHHHHCCSEEEECTT----------CHHHHHHHHHHCT-T-CEEEECCBSTTSBCTTHHHHHTCSEEEECHHHHT
T ss_pred HHHHHHHHHhCCCEEEECCC----------CHHHHHHHHHhCC-C-CEEEcCCcccCccCHHHHHHcCCCEEEECHHhcC
Confidence 45688899999999998532 1245666666664 4 57889999853 2566788899999999999985
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 018919 294 SLAAEGEKGVRRVLEMLREEFELAMAL 320 (349)
Q Consensus 294 ~~~~~G~~gv~~~l~~l~~el~~~m~~ 320 (349)
+ +......+.++++++.....
T Consensus 193 A------~dP~~aa~~i~~~i~~~~~~ 213 (222)
T 4dbe_A 193 A------GNPLTALRTINKIIEDKVMK 213 (222)
T ss_dssp S------SSHHHHHHHHHHHHHHHHHH
T ss_pred C------CCHHHHHHHHHHHHHHHHHH
Confidence 3 22334566777777765544
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.039 Score=51.02 Aligned_cols=182 Identities=20% Similarity=0.097 Sum_probs=100.8
Q ss_pred hHHHHHHHHHcCCeEEecCCC------------CCCHHHHH-------hhCCCceEEEE-eecCChhHHHHHHHHHHHcC
Q 018919 90 EYATARAASAAGTIMTLSSWS------------TSSVEEVA-------STGPGIRFFQL-YVYKDRNVVAQLVRRAERAG 149 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~-------~~~~~~~~~Ql-~~~~~~~~~~~~~~~~~~~G 149 (349)
|...|+.+.++|+..++.+.. ..+++++. +..+.|...-+ ++..+.....+.+++++++|
T Consensus 28 D~~sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~v~~~v~~l~~aG 107 (295)
T 1s2w_A 28 NGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRG 107 (295)
T ss_dssp SHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecCCCCCCCHHHHHHHHHHHHHcC
Confidence 447888999999887653321 12334432 22233333322 11235566677888889999
Q ss_pred CCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc--CCCCCCch-HHHHHHHHHhc-CCc--EEEEEecC---------
Q 018919 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF--QGLDLGKM-DEDVKWLQTIT-KLP--ILVKGVLT--------- 214 (349)
Q Consensus 150 ~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~--~~~~~~~~-~~~i~~i~~~~-~~p--v~vK~v~~--------- 214 (349)
+.++-|- |... |+..+--.. ..+.+.+. .+.|+.+++.. +.+ |+.+.-..
T Consensus 108 aagv~iE-D~~~--------------~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~a 172 (295)
T 1s2w_A 108 VAGACLE-DKLF--------------PKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEA 172 (295)
T ss_dssp CCEEEEE-CBCC----------------------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHH
T ss_pred CcEEEEC-CCCC--------------CccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHH
Confidence 9987653 2210 110000000 00111222 45566666654 333 44443211
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
.+.++...++|||.|.+- .+.++.+.+.++.+.++..+|+++.-+-....++.+.-++|.+.|.++...+.+
T Consensus 173 i~Ra~ay~eAGAd~i~~e--------~~~~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~~~eL~~lGv~~v~~~~~~~ra 244 (295)
T 1s2w_A 173 LKRAEAYRNAGADAILMH--------SKKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRA 244 (295)
T ss_dssp HHHHHHHHHTTCSEEEEC--------CCSSSSHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCCEEEECSHHHHH
T ss_pred HHHHHHHHHcCCCEEEEc--------CCCCCHHHHHHHHHHcCCCCCEEEeCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 245788999999999982 123445777888888854599998743111123445556999999999887764
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.017 Score=51.13 Aligned_cols=128 Identities=17% Similarity=0.211 Sum_probs=84.6
Q ss_pred eecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcE
Q 018919 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPI 207 (349)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv 207 (349)
|...+.+.+.+-++.+++.|++++++.+=.+ |... .+.++++.+.. +.|+
T Consensus 70 Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~----------------------------dg~iD~~~~~~Li~~a~~~~v 121 (224)
T 2bdq_A 70 YNDLELRIMEEDILRAVELESDALVLGILTS----------------------------NNHIDTEAIEQLLPATQGLPL 121 (224)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCT----------------------------TSSBCHHHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC----------------------------CCCcCHHHHHHHHHHhCCCeE
Confidence 5444556778888999999999998754221 1222 45566666554 6777
Q ss_pred EEEEe------cCH-HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH-H
Q 018919 208 LVKGV------LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-A 279 (349)
Q Consensus 208 ~vK~v------~~~-~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal-~ 279 (349)
..--. .++ +-.+.+.+.|++.|-.|+ +.........++.|.++.+..++++.|++.|||+. +.+.+.+ .
T Consensus 122 TFHRAFD~~~~~d~~~ale~L~~lGv~rILTSG--~~~~~~a~~g~~~L~~Lv~~a~~ri~Im~GgGV~~-~Ni~~l~~~ 198 (224)
T 2bdq_A 122 VFHMAFDVIPKSDQKKSIDQLVALGFTRILLHG--SSNGEPIIENIKHIKALVEYANNRIEIMVGGGVTA-ENYQYICQE 198 (224)
T ss_dssp EECGGGGGSCTTTHHHHHHHHHHTTCCEEEECS--CSSCCCGGGGHHHHHHHHHHHTTSSEEEECSSCCT-TTHHHHHHH
T ss_pred EEECchhccCCcCHHHHHHHHHHcCCCEEECCC--CCCCCcHHHHHHHHHHHHHhhCCCeEEEeCCCCCH-HHHHHHHHh
Confidence 65432 333 335778999999998643 32211234456677777666556899999999986 6666666 4
Q ss_pred hCCCEEEEc
Q 018919 280 LGASGIFIG 288 (349)
Q Consensus 280 ~GA~~V~ig 288 (349)
+|++.+=..
T Consensus 199 tGv~e~H~s 207 (224)
T 2bdq_A 199 TGVKQAHGT 207 (224)
T ss_dssp HTCCEEEET
T ss_pred hCCCEEccc
Confidence 899988754
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.03 Score=49.78 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=57.5
Q ss_pred cCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCc----hhhHHHHHHH---HHHhcCCCcEEEecCCCCHHHHH
Q 018919 203 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYV----PATIMALEEV---VKATQGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 203 ~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~----~~~~~~l~~i---~~~~~~~ipvia~GGI~~~~dv~ 275 (349)
.++-.++ -+-+.++.+.+...+.+.|-+-+.-- ..+| ..+.+.+.++ .+.+..+++|+..|||.++.|+.
T Consensus 113 ~GL~~iv-cVge~~e~~~~~~~~~~iIayep~wa--iGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~ 189 (226)
T 1w0m_A 113 LGLDVVV-CAPDPRTSLAAAALGPHAVAVEPPEL--IGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVA 189 (226)
T ss_dssp TTCEEEE-EESSHHHHHHHHHTCCSEEEECCGGG--TTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHH
T ss_pred CCCEEEE-EeCCHHHHHHHhcCCCCEEEEcChhh--hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHH
Confidence 3664444 24566666777788887555433200 0122 2223323333 33334579999999999999999
Q ss_pred HHHHhCCCEEEEchHHHH
Q 018919 276 KALALGASGIFIGRPVVY 293 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l~ 293 (349)
.+...|+|++.||++++.
T Consensus 190 ~~~~~giDG~LVG~a~l~ 207 (226)
T 1w0m_A 190 AALRLGTRGVLLASAAVK 207 (226)
T ss_dssp HHHHTTCSEEEECHHHHT
T ss_pred HHHhCCCCEEEECHHHHC
Confidence 888899999999999986
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.21 Score=46.14 Aligned_cols=180 Identities=9% Similarity=0.076 Sum_probs=108.3
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe-----cCCCCCCHHHHHh-------h-CC-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-----~~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+++-.-+.|+.+++ |++...+.+|..+ . .. -+.+..... .+...
T Consensus 9 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ 87 (300)
T 3eb2_A 9 FPYLVSPVDAEGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVAS-TSVAD 87 (300)
T ss_dssp EEBCCCCBCTTSCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEE-SSHHH
T ss_pred EEEEeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHH
Confidence 35666777533333444555777777788876654 2334566666322 1 22 346666644 46677
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.++++.+++.|++++.+.. |. |.-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 88 ai~la~~a~~~Gadavlv~~--P~-----------y~~~------------~~~~l~~~f~~va~a~~lPiilYn~P~~t 142 (300)
T 3eb2_A 88 AVAQAKLYEKLGADGILAIL--EA-----------YFPL------------KDAQIESYFRAIADAVEIPVVIYTNPQFQ 142 (300)
T ss_dssp HHHHHHHHHHHTCSEEEEEE--CC-----------SSCC------------CHHHHHHHHHHHHHHCSSCEEEEECTTTC
T ss_pred HHHHHHHHHHcCCCEEEEcC--CC-----------CCCC------------CHHHHHHHHHHHHHHCCCCEEEEECcccc
Confidence 78899999999999987643 21 1101 111 256678888888999998775
Q ss_pred ---cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 ---LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 ---~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++...++.+.. +-+|.-+. .++..+.++.+..++++.|+.... ..++.++++|++++.-+
T Consensus 143 g~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~f~v~~G~d----~~~~~~l~~G~~G~is~ 208 (300)
T 3eb2_A 143 RSDLTLDVIARLAEHPRIRYIKDAS----------TNTGRLLSIINRCGDALQVFSASA----HIPAAVMLIGGVGWMAG 208 (300)
T ss_dssp SSCCCHHHHHHHHTSTTEEEEEECS----------SBHHHHHHHHHHHGGGSEEEECTT----SCHHHHHHTTCCEEEEG
T ss_pred CCCCCHHHHHHHHcCCCEEEEEcCC----------CCHHHHHHHHHHcCCCeEEEeCcH----HHHHHHHhCCCCEEEeC
Confidence 4567777775432 22332221 134445555555554566654222 23567899999999988
Q ss_pred hHH
Q 018919 289 RPV 291 (349)
Q Consensus 289 ~~~ 291 (349)
.+-
T Consensus 209 ~an 211 (300)
T 3eb2_A 209 PAC 211 (300)
T ss_dssp GGG
T ss_pred hhh
Confidence 753
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=96.94 E-value=0.019 Score=51.82 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 193 DEDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.++++.+|+.+++||+-|.. .++.+...+..+|||+|.+.-.- -.+..+..+.+.+..+ .+.+++. |++.
T Consensus 93 ~~~L~~vr~~v~lPvLrKDFiid~yQI~eAr~~GADaILLI~a~-----L~~~~l~~l~~~A~~l--Gl~~LvE--Vh~~ 163 (258)
T 4a29_A 93 YETLRKIASSVSIPILMSDFIVKESQIDDAYNLGADTVLLIVKI-----LTERELESLLEYARSY--GMEPLIL--INDE 163 (258)
T ss_dssp HHHHHHHHTTCSSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGG-----SCHHHHHHHHHHHHHT--TCCCEEE--ESSH
T ss_pred HHHHHHHHHhcCCCEeeccccccHHHHHHHHHcCCCeeehHHhh-----cCHHHHHHHHHHHHHH--hHHHHHh--cchH
Confidence 57899999999999999984 78899999999999999875321 1233455566666666 5666664 8999
Q ss_pred HHHHHHHHhCCCEEEEc
Q 018919 272 TDVFKALALGASGIFIG 288 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig 288 (349)
+++-+++.+||+.++|-
T Consensus 164 ~El~rAl~~~a~iIGIN 180 (258)
T 4a29_A 164 NDLDIALRIGARFIGIM 180 (258)
T ss_dssp HHHHHHHHTTCSEEEEC
T ss_pred HHHHHHhcCCCcEEEEe
Confidence 99999999999999875
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.26 Score=45.83 Aligned_cols=180 Identities=14% Similarity=0.126 Sum_probs=109.3
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------h-CC-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.+.-..+++-.-+.|+.+++ ++ +...+.+|..+ . .. -+.+..... .+...
T Consensus 27 ~~alvTPf~~dg~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~-~st~~ 105 (315)
T 3si9_A 27 VTALITPFDDNGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGS-NSTSE 105 (315)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC-SSHHH
T ss_pred eEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHH
Confidence 36667777533333444555777777788987655 22 23456665322 1 22 345666533 45667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.++++.+++.|++++.+-. |. |.-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 106 ai~la~~A~~~Gadavlv~~--P~-----------y~~~------------~~~~l~~~f~~va~a~~lPiilYn~P~~t 160 (315)
T 3si9_A 106 AVELAKHAEKAGADAVLVVT--PY-----------YNRP------------NQRGLYTHFSSIAKAISIPIIIYNIPSRS 160 (315)
T ss_dssp HHHHHHHHHHTTCSEEEEEC--CC-----------SSCC------------CHHHHHHHHHHHHHHCSSCEEEEECHHHH
T ss_pred HHHHHHHHHhcCCCEEEECC--CC-----------CCCC------------CHHHHHHHHHHHHHcCCCCEEEEeCchhh
Confidence 78899999999999987632 32 1101 111 256678888888999998765
Q ss_pred ---cCHHHHHHHHH-c-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 213 ---LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 213 ---~~~~~a~~a~~-~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+++...++.+ . .+-+|.-+. .++..+.++.+..++++.|+ +|. ..-++.++.+||+++.-
T Consensus 161 g~~l~~~~~~~La~~~pnIvgiKdss----------gd~~~~~~l~~~~~~~f~v~-~G~---d~~~l~~l~~G~~G~is 226 (315)
T 3si9_A 161 VIDMAVETMRDLCRDFKNIIGVKDAT----------GKIERASEQREKCGKDFVQL-SGD---DCTALGFNAHGGVGCIS 226 (315)
T ss_dssp SCCCCHHHHHHHHHHCTTEEEEEECS----------CCTHHHHHHHHHHCSSSEEE-ESC---GGGHHHHHHTTCCEEEE
T ss_pred CCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEE-ecC---HHHHHHHHHcCCCEEEe
Confidence 46777777776 3 233443321 12344555556565567664 442 23466789999999998
Q ss_pred chHH
Q 018919 288 GRPV 291 (349)
Q Consensus 288 g~~~ 291 (349)
+.+.
T Consensus 227 ~~an 230 (315)
T 3si9_A 227 VSSN 230 (315)
T ss_dssp SGGG
T ss_pred cHHH
Confidence 8743
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.25 Score=45.40 Aligned_cols=178 Identities=13% Similarity=0.154 Sum_probs=106.6
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+ -.+-.+.++-..+++-.-+.|+.+++ + ++...+.+|-.+ . .. .+.+..... .+-...
T Consensus 7 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~a 84 (292)
T 2vc6_A 7 TALVTPF-ADDRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGS-NSTAEA 84 (292)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC-SSHHHH
T ss_pred EeeecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-ccHHHH
Confidence 4445555 33333445555777777788987665 2 233456665322 1 22 345566543 455667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+.. |. |.-| +++ ..+..+.+.+.+++||++=.+
T Consensus 85 i~la~~A~~~Gadavlv~~--P~-----------y~~~------------s~~~l~~~f~~ia~a~~lPiilYn~P~~tg 139 (292)
T 2vc6_A 85 IAFVRHAQNAGADGVLIVS--PY-----------YNKP------------TQEGIYQHFKAIDAASTIPIIVYNIPGRSA 139 (292)
T ss_dssp HHHHHHHHHTTCSEEEEEC--CC-----------SSCC------------CHHHHHHHHHHHHHHCSSCEEEEECHHHHS
T ss_pred HHHHHHHHHcCCCEEEEcC--CC-----------CCCC------------CHHHHHHHHHHHHHhCCCCEEEEeCccccC
Confidence 8889999999999987643 31 1101 111 145677888888999998654
Q ss_pred --cCHHHHHHHHH-c-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 --LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 --~~~~~a~~a~~-~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++...++.+ . .+-+|.-+. | ++..+.++.+..++++.|+ +| +-..++.++++||++++-+
T Consensus 140 ~~l~~~~~~~La~~~pnIvgiK~s~--g--------d~~~~~~~~~~~~~~f~v~-~G---~d~~~~~~l~~G~~G~is~ 205 (292)
T 2vc6_A 140 IEIHVETLARIFEDCPNVKGVXDAT--G--------NLLRPSLERMACGEDFNLL-TG---EDGTALGYMAHGGHGCISV 205 (292)
T ss_dssp CCCCHHHHHHHHHHCTTEEEEEECS--C--------CTHHHHHHHHHSCTTSEEE-ES---CGGGHHHHHHTTCCEEEES
T ss_pred cCCCHHHHHHHHhhCCCEEEEecCC--C--------CHHHHHHHHHHcCCCEEEE-EC---chHHHHHHHHcCCCEEEec
Confidence 46777777765 3 233444321 1 2344555556555567665 45 2345678899999999988
Q ss_pred hHH
Q 018919 289 RPV 291 (349)
Q Consensus 289 ~~~ 291 (349)
.+.
T Consensus 206 ~~n 208 (292)
T 2vc6_A 206 TAN 208 (292)
T ss_dssp GGG
T ss_pred HHH
Confidence 754
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0055 Score=54.51 Aligned_cols=111 Identities=19% Similarity=0.275 Sum_probs=81.8
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcEEEE
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPILVK 210 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK 210 (349)
..+.+...+.++.+.+.|++.++++...+. -.+.++++++.+ ++-+...
T Consensus 25 ~~~~~~~~~~~~al~~gGv~~iel~~k~~~------------------------------~~~~i~~l~~~~~~l~vgaG 74 (224)
T 1vhc_A 25 LDNADDILPLADTLAKNGLSVAEITFRSEA------------------------------AADAIRLLRANRPDFLIAAG 74 (224)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETTSTT------------------------------HHHHHHHHHHHCTTCEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeccCch------------------------------HHHHHHHHHHhCcCcEEeeC
Confidence 356777788899999999999999864321 135688888877 4445555
Q ss_pred EecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 211 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 211 ~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+.+.++++.|.++|||+|+.. + . +.+.+...++ . .++++. |+.|++++.+++++|||.|.+
T Consensus 75 tvl~~d~~~~A~~aGAd~v~~p---~--~-----d~~v~~~ar~-~--g~~~i~--Gv~t~~e~~~A~~~Gad~vk~ 136 (224)
T 1vhc_A 75 TVLTAEQVVLAKSSGADFVVTP---G--L-----NPKIVKLCQD-L--NFPITP--GVNNPMAIEIALEMGISAVKF 136 (224)
T ss_dssp SCCSHHHHHHHHHHTCSEEECS---S--C-----CHHHHHHHHH-T--TCCEEC--EECSHHHHHHHHHTTCCEEEE
T ss_pred cEeeHHHHHHHHHCCCCEEEEC---C--C-----CHHHHHHHHH-h--CCCEEe--ccCCHHHHHHHHHCCCCEEEE
Confidence 5678899999999999999542 1 1 2333444433 4 566665 499999999999999999998
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.23 Score=45.88 Aligned_cols=181 Identities=18% Similarity=0.244 Sum_probs=107.5
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|-++.|+.-.+-.+.++-..+++-.-+.|+.+++ ++ +...+.+|-.+ . .. -+.+..... .+-..+
T Consensus 18 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~-~~t~~a 96 (301)
T 1xky_A 18 TAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGS-NNTHAS 96 (301)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHH
T ss_pred EeeECcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCC-CCHHHH
Confidence 5556676433323444445777777788886654 33 23456665322 1 22 345566533 455667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+.. |. |.-| +++ ..+..+.+.+.+++||++=.+
T Consensus 97 i~la~~A~~~Gadavlv~~--P~-----------y~~~------------s~~~l~~~f~~va~a~~lPiilYn~P~~tg 151 (301)
T 1xky_A 97 IDLTKKATEVGVDAVMLVA--PY-----------YNKP------------SQEGMYQHFKAIAESTPLPVMLYNVPGRSI 151 (301)
T ss_dssp HHHHHHHHHTTCSEEEEEC--CC-----------SSCC------------CHHHHHHHHHHHHHTCSSCEEEEECHHHHS
T ss_pred HHHHHHHHhcCCCEEEEcC--CC-----------CCCC------------CHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 8899999999999987642 31 1101 111 256677888888999998664
Q ss_pred --cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 --LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 --~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+++...++.+.. +-+|.-+. ..+..+.++.+..++++.|+ +|. -.-++.++.+|++++.-+.
T Consensus 152 ~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~f~v~-~G~---d~~~l~~l~~G~~G~is~~ 217 (301)
T 1xky_A 152 VQISVDTVVRLSEIENIVAIKDAG----------GDVLTMTEIIEKTADDFAVY-SGD---DGLTLPAMAVGAKGIVSVA 217 (301)
T ss_dssp SCCCHHHHHHHHTSTTEEEEEECS----------SCHHHHHHHHHHSCTTCEEE-ESS---GGGHHHHHHTTCCEEEEST
T ss_pred CCCCHHHHHHHHcCCCEEEEEcCC----------CCHHHHHHHHHhcCCCeEEE-ECc---HHHHHHHHHcCCCEEEcCH
Confidence 4667777776531 22333321 12455556666655456554 442 2347788999999999988
Q ss_pred HHHH
Q 018919 290 PVVY 293 (349)
Q Consensus 290 ~~l~ 293 (349)
+-++
T Consensus 218 an~~ 221 (301)
T 1xky_A 218 SHVI 221 (301)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 6543
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.087 Score=48.69 Aligned_cols=179 Identities=15% Similarity=0.039 Sum_probs=100.1
Q ss_pred hHHHHHHHHHcCCeEEecCC-------------CCCCHHHHHh-------hCCCceEEEE-eecCChhHHHHHHHHHHHc
Q 018919 90 EYATARAASAAGTIMTLSSW-------------STSSVEEVAS-------TGPGIRFFQL-YVYKDRNVVAQLVRRAERA 148 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~-------------~~~~~e~i~~-------~~~~~~~~Ql-~~~~~~~~~~~~~~~~~~~ 148 (349)
|...|+.+.+.|+..++.+. ...+++++.. ....|...-+ ++..++....+.+++++++
T Consensus 31 D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~v~~~v~~l~~a 110 (298)
T 3eoo_A 31 TAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTGWGGAFNIARTIRSFIKA 110 (298)
T ss_dssp SHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEECCCCCCCHHHHHHHHHHHHHh
Confidence 34788888999987664322 1135555432 2222332222 1123666677888999999
Q ss_pred CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEecC----------HH
Q 018919 149 GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLT----------AE 216 (349)
Q Consensus 149 G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~----------~~ 216 (349)
|+.++-|- |.. .|++-+-.....+.+.+- .+.|+..++.. +.++++-.... .+
T Consensus 111 Gaagv~iE-Dq~--------------~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~ 175 (298)
T 3eoo_A 111 GVGAVHLE-DQV--------------GQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIE 175 (298)
T ss_dssp TCSEEEEE-CBC--------------CCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHH
T ss_pred CCeEEEEC-CCC--------------CCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHH
Confidence 99987652 211 011100000000122221 34455555543 34444433321 24
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEe---cCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 217 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD---GGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~---GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
-++...++|||.|.+- ++.+.+.+.++.+.+ ++|++++ +|-.-.-.+.+.-++|.+.|..|...+.
T Consensus 176 Ra~ay~~AGAD~if~~---------~~~~~ee~~~~~~~~--~~Pl~~n~~~~g~tp~~~~~eL~~lGv~~v~~~~~~~r 244 (298)
T 3eoo_A 176 RAIAYVEAGADMIFPE---------AMKTLDDYRRFKEAV--KVPILANLTEFGSTPLFTLDELKGANVDIALYCCGAYR 244 (298)
T ss_dssp HHHHHHHTTCSEEEEC---------CCCSHHHHHHHHHHH--CSCBEEECCTTSSSCCCCHHHHHHTTCCEEEECSHHHH
T ss_pred HHHhhHhcCCCEEEeC---------CCCCHHHHHHHHHHc--CCCeEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHHH
Confidence 4677889999999882 234678888888888 5787664 4422112344555699999999987776
Q ss_pred H
Q 018919 294 S 294 (349)
Q Consensus 294 ~ 294 (349)
+
T Consensus 245 a 245 (298)
T 3eoo_A 245 A 245 (298)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.057 Score=50.37 Aligned_cols=179 Identities=17% Similarity=0.096 Sum_probs=103.5
Q ss_pred hHHHHHHHHHcCCeEEecCCC-------------CCCHHHHH-------hhCC-CceEEEE-eecCChhHHHHHHHHHHH
Q 018919 90 EYATARAASAAGTIMTLSSWS-------------TSSVEEVA-------STGP-GIRFFQL-YVYKDRNVVAQLVRRAER 147 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~-------------~~~~e~i~-------~~~~-~~~~~Ql-~~~~~~~~~~~~~~~~~~ 147 (349)
|...|+.+.++|+..++.+.+ ..+++++. +..+ -+...-+ ++..++....+.++++++
T Consensus 48 D~~sA~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg~~~~v~~tv~~l~~ 127 (318)
T 1zlp_A 48 DALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGPLNVQRFIRELIS 127 (318)
T ss_dssp SHHHHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 447889999999887753321 13555542 2332 2222222 112367777788899999
Q ss_pred cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCc--EEEEEec--------CH
Q 018919 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLP--ILVKGVL--------TA 215 (349)
Q Consensus 148 ~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~p--v~vK~v~--------~~ 215 (349)
+|+.++-|- |... |+..+-.....+.+.+. .+.|+.+++.. +.+ |+.+.-. ..
T Consensus 128 aGaagv~iE-D~~~--------------~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai 192 (318)
T 1zlp_A 128 AGAKGVFLE-DQVW--------------PKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGI 192 (318)
T ss_dssp TTCCEEEEE-CBCS--------------SCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHH
T ss_pred cCCcEEEEC-CCCC--------------CccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHH
Confidence 999987653 2210 11111000000122222 45566666654 233 3433311 22
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEE---ecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL---DGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia---~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+.++...++|||.|.+- +.++.+.+.++.+.+ ++|+++ .+|-...-++.+.-++|.+.|.++...+
T Consensus 193 ~Ra~Ay~eAGAd~i~~e---------~~~~~e~~~~i~~~l--~~P~lan~~~~g~~~~~~~~eL~~lGv~~v~~~~~~~ 261 (318)
T 1zlp_A 193 RRANLYKEAGADATFVE---------APANVDELKEVSAKT--KGLRIANMIEGGKTPLHTPEEFKEMGFHLIAHSLTAV 261 (318)
T ss_dssp HHHHHHHHTTCSEEEEC---------CCCSHHHHHHHHHHS--CSEEEEEECTTSSSCCCCHHHHHHHTCCEEEECSHHH
T ss_pred HHHHHHHHcCCCEEEEc---------CCCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHH
Confidence 55788999999999982 245678888888888 689854 3432222334455579999999999877
Q ss_pred HH
Q 018919 293 YS 294 (349)
Q Consensus 293 ~~ 294 (349)
++
T Consensus 262 ra 263 (318)
T 1zlp_A 262 YA 263 (318)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.03 Score=53.67 Aligned_cols=206 Identities=23% Similarity=0.241 Sum_probs=111.9
Q ss_pred CCCCCcceeEcCeecC---cceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCCCCCHHHHHhhCCCceEEEEee
Q 018919 56 VSKIDMNTTVLGFKIS---MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTSSVEEVASTGPGIRFFQLYV 131 (349)
Q Consensus 56 ~~~~d~s~~l~g~~~~---~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~~~~~e~i~~~~~~~~~~Ql~~ 131 (349)
...-|+.+++.+..+. .+++++|.+.. +.+.-..++++++++|+.++. +++.+.+ .| ..||-
T Consensus 124 ~~~~~t~i~i~~~~iG~~~~~~Iigpcsve---s~e~a~~~a~~~k~aGa~~vk~q~fkprt-------s~--~~f~g-- 189 (385)
T 3nvt_A 124 NKKEDTIVTVKGLPIGNGEPVFVFGPCSVE---SYEQVAAVAESIKAKGLKLIRGGAFKPRT-------SP--YDFQG-- 189 (385)
T ss_dssp TCCSCCCEEETTEEETSSSCEEEEECSBCC---CHHHHHHHHHHHHHTTCCEEECBSSCCCS-------ST--TSCCC--
T ss_pred cCCCCcEEEECCEEECCCCeEEEEEeCCcC---CHHHHHHHHHHHHHcCCCeEEcccccCCC-------Ch--HhhcC--
Confidence 3445667777776653 36777887653 334445799999999999775 3332211 12 11221
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccccCCCCCCchHHHHHHHHHhcCCcEEEE
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEDVKWLQTITKLPILVK 210 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK 210 (349)
-..+....+.+.+++.|...+.=-.|. ..-++-..+ ++- ++..++ +.+ .+.++.+. .++.||++|
T Consensus 190 -l~~egl~~L~~~~~~~Gl~~~te~~d~-----~~~~~l~~~-vd~lkIgs~~---~~n---~~LL~~~a-~~gkPVilk 255 (385)
T 3nvt_A 190 -LGLEGLKILKRVSDEYGLGVISEIVTP-----ADIEVALDY-VDVIQIGARN---MQN---FELLKAAG-RVDKPILLK 255 (385)
T ss_dssp -CTHHHHHHHHHHHHHHTCEEEEECCSG-----GGHHHHTTT-CSEEEECGGG---TTC---HHHHHHHH-TSSSCEEEE
T ss_pred -CCHHHHHHHHHHHHHcCCEEEEecCCH-----HHHHHHHhh-CCEEEECccc---ccC---HHHHHHHH-ccCCcEEEe
Confidence 123444445555566788765311111 111111111 110 011111 011 45566665 479999999
Q ss_pred Ee--cCHHHHHH----HHHcCCCEEEEecCCCCCCCC---chhhHHHHHHHHHHhcCCCcEEEe----cCCCCH--HHHH
Q 018919 211 GV--LTAEDARI----AVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVFLD----GGVRRG--TDVF 275 (349)
Q Consensus 211 ~v--~~~~~a~~----a~~~G~d~I~v~~~gg~~~~~---~~~~~~~l~~i~~~~~~~ipvia~----GGI~~~--~dv~ 275 (349)
.- .++++... +.+.|.+-|++--.|.+.... ....+..++.+++.. ++||+.| +|-+.- .=..
T Consensus 256 ~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~--~lpV~~D~th~~G~r~~v~~~a~ 333 (385)
T 3nvt_A 256 RGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKET--HLPVMVDVTHSTGRKDLLLPCAK 333 (385)
T ss_dssp CCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEEEEHHHHHCCGGGHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhc--CCCEEEcCCCCCCccchHHHHHH
Confidence 85 46666444 455788767665444433211 122456677776665 7899887 333332 2245
Q ss_pred HHHHhCCCEEEEchHH
Q 018919 276 KALALGASGIFIGRPV 291 (349)
Q Consensus 276 kal~~GA~~V~ig~~~ 291 (349)
.|.++||++++|-+-+
T Consensus 334 AAvA~GA~gl~iE~H~ 349 (385)
T 3nvt_A 334 AALAIEADGVMAEVHP 349 (385)
T ss_dssp HHHHTTCSEEEEEBCS
T ss_pred HHHHhCCCEEEEEecC
Confidence 6889999999998743
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0029 Score=58.69 Aligned_cols=119 Identities=17% Similarity=0.161 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-cCHHH
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-LTAED 217 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-~~~~~ 217 (349)
+.++..+++|++++.+=-+.|.. .+ .+.++ .... .+.|+++++.+++||+.|.. ...++
T Consensus 32 e~A~~ye~~GA~~lsvLe~~~~D------i~------------~~~g~-~R~~~~~~i~~i~~~v~iPvl~k~~i~~ide 92 (297)
T 4adt_A 32 EQAKIAEKAGAIGVMILENIPSE------LR------------NTDGV-ARSVDPLKIEEIRKCISINVLAKVRIGHFVE 92 (297)
T ss_dssp HHHHHHHHHTCSEEEECCCCC-----------------------CCCC-CCCCCHHHHHHHHTTCCSEEEEEEETTCHHH
T ss_pred HHHHHHHHcCCCEEEEecCCCCc------ch------------hcCCc-ccCCCHHHHHHHHHhcCCCEEEeccCCcHHH
Confidence 56788899999998542132210 00 00000 0111 68899999999999999954 45889
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
++.+.++|||.|..+ .+-+ ++ +.+..+.+. ...+++++ ++++.+++.+++.+||+.|.+.
T Consensus 93 ~qil~aaGAD~Id~s-~~~~-----~~--~li~~i~~~-~~g~~vvv--~v~~~~Ea~~a~~~Gad~I~v~ 152 (297)
T 4adt_A 93 AQILEELKVDMLDES-EVLT-----MA--DEYNHINKH-KFKTPFVC--GCTNLGEALRRISEGASMIRTK 152 (297)
T ss_dssp HHHHHHTTCSEEEEE-TTSC-----CS--CSSCCCCGG-GCSSCEEE--EESSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHcCCCEEEcC-CCCC-----HH--HHHHHHHhc-CCCCeEEE--EeCCHHHHHHHHhCCCCEEEEC
Confidence 999999999999321 1111 10 111222221 12577877 5999999999999999999886
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.026 Score=52.38 Aligned_cols=189 Identities=15% Similarity=0.094 Sum_probs=101.8
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCC-------------CCCCHHHHHh-------hCC--CceEEEE-
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW-------------STSSVEEVAS-------TGP--GIRFFQL- 129 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~-------------~~~~~e~i~~-------~~~--~~~~~Ql- 129 (349)
+.+..|..+ +...|+.+.++|+..++.+. ...+++++.. ..+ .|...-+
T Consensus 25 ~~i~~~~a~--------D~~sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~~~~~PviaD~d 96 (307)
T 3lye_A 25 ELIVCPGVY--------DGLSARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDPFGPPLIADMD 96 (307)
T ss_dssp CCEEEEEEC--------SHHHHHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSSTTSCCEEEECT
T ss_pred CeEEEecCc--------CHHHHHHHHHcCCCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccCCCCCcEEEECC
Confidence 355566544 44788999999988765321 1235555432 222 2322222
Q ss_pred eecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc---CC
Q 018919 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT---KL 205 (349)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~---~~ 205 (349)
++..++....+.+++++++|+.++.|- |.. . |++-+-.....+.+.+. .+.|+..++.. +.
T Consensus 97 ~Gyg~~~~v~~~v~~l~~aGaagv~iE-Dq~-~-------------~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~ 161 (307)
T 3lye_A 97 TGYGGPIMVARTVEHYIRSGVAGAHLE-DQI-L-------------TKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRS 161 (307)
T ss_dssp TCSSSHHHHHHHHHHHHHTTCCEEEEC-CBC-C-------------CC--------CBCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEc-CCC-C-------------CcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCC
Confidence 112356666778889999999987652 211 1 11000000000122222 34455555442 45
Q ss_pred cEEEEEec------C----HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEE---ecCCCCHH
Q 018919 206 PILVKGVL------T----AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL---DGGVRRGT 272 (349)
Q Consensus 206 pv~vK~v~------~----~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia---~GGI~~~~ 272 (349)
++++-... . .+-++...++|||.|.+- ++.+.+.+.++.+.++ .+|+++ .||-...-
T Consensus 162 d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~---------~~~~~~~~~~i~~~~~-~~Pv~~n~~~~g~~p~~ 231 (307)
T 3lye_A 162 DFVLIARTDALQSLGYEECIERLRAARDEGADVGLLE---------GFRSKEQAAAAVAALA-PWPLLLNSVENGHSPLI 231 (307)
T ss_dssp CCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEEC---------CCSCHHHHHHHHHHHT-TSCBEEEEETTSSSCCC
T ss_pred CeEEEEechhhhccCHHHHHHHHHHHHHCCCCEEEec---------CCCCHHHHHHHHHHcc-CCceeEEeecCCCCCCC
Confidence 55443331 1 233566789999999882 2345677888888874 367754 34422112
Q ss_pred HHHHHHHhCCCEEEEchHHHHH
Q 018919 273 DVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~~ 294 (349)
.+.+.-++|.+.|..+...+++
T Consensus 232 t~~eL~~lGv~~v~~~~~~~ra 253 (307)
T 3lye_A 232 TVEEAKAMGFRIMIFSFATLAP 253 (307)
T ss_dssp CHHHHHHHTCSEEEEETTTHHH
T ss_pred CHHHHHHcCCeEEEEChHHHHH
Confidence 3344556899999988866653
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0046 Score=56.57 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.++++|+.+++|+++.. +.++++++.+.+.|+|+++|.
T Consensus 197 ~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 197 HALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp HHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5679999998999999865 578999999999999999995
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.29 Score=45.48 Aligned_cols=179 Identities=13% Similarity=0.062 Sum_probs=110.5
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-..-.+.+.-..+++-.-+.|+.+++ + ++...+.+|..+ . .. -+.+++.-. .+...
T Consensus 29 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~-~~t~~ 107 (315)
T 3na8_A 29 IGYTITPFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSD-LTTAK 107 (315)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC-SSHHH
T ss_pred EEEeeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHH
Confidence 36677787543334445556777778888987655 2 334456665322 1 22 345666533 45667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.++++.+++.|++++.+. .|.. .-| +++ ..+..+.+.+.+++||++=.+
T Consensus 108 ai~la~~A~~~Gadavlv~--~P~y-----------~~~------------s~~~l~~~f~~va~a~~lPiilYn~P~~t 162 (315)
T 3na8_A 108 TVRRAQFAESLGAEAVMVL--PISY-----------WKL------------NEAEVFQHYRAVGEAIGVPVMLYNNPGTS 162 (315)
T ss_dssp HHHHHHHHHHTTCSEEEEC--CCCS-----------SCC------------CHHHHHHHHHHHHHHCSSCEEEEECHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCC-----------CCC------------CHHHHHHHHHHHHHhCCCcEEEEeCcchh
Confidence 7889999999999998763 2311 101 111 256688888888999998775
Q ss_pred ---cCHHHHHHH-HHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 213 ---LTAEDARIA-VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 213 ---~~~~~a~~a-~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+++...++ .+.. +-+|.-+. .++..+.++.+.+++++.|+... ...++.++++|+++++-
T Consensus 163 g~~l~~~~~~~L~a~~pnIvgiKdss----------gd~~~~~~~~~~~~~~f~v~~G~----D~~~l~~l~~G~~G~is 228 (315)
T 3na8_A 163 GIDMSVELILRIVREVDNVTMVKEST----------GDIQRMHKLRLLGEGRVPFYNGC----NPLALEAFVAGAKGWCS 228 (315)
T ss_dssp SCCCCHHHHHHHHHHSTTEEEEEECS----------SCHHHHHHHHHHTTTCSCEEECC----GGGHHHHHHHTCSEEEE
T ss_pred CcCCCHHHHHHHHhcCCCEEEEECCC----------CCHHHHHHHHHHcCCCEEEEeCc----hHHHHHHHHCCCCEEEe
Confidence 456777776 5542 33333321 13455566666665567666433 23467889999999999
Q ss_pred chH
Q 018919 288 GRP 290 (349)
Q Consensus 288 g~~ 290 (349)
+.+
T Consensus 229 ~~a 231 (315)
T 3na8_A 229 AAP 231 (315)
T ss_dssp SGG
T ss_pred chh
Confidence 875
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0014 Score=66.16 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCC-CCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCH-----------HHHHHHHHhCC
Q 018919 216 EDARIAVQAGAAGIIVSNHGAR-QLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGA 282 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~-~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-----------~dv~kal~~GA 282 (349)
+.|+.+.+.|+|.+.+.+-.+. ... ......+.+.++++.+ .+||++.|||++. +++.+++.+||
T Consensus 284 ~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~--~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGa 361 (555)
T 1jvn_A 284 QLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGA 361 (555)
T ss_dssp HHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhC--CCcEEEeCccccchhcccccchHHHHHHHHHHcCC
Confidence 6788899999999988764331 111 1233567777776665 7999999999998 44999999999
Q ss_pred CEEEEchHHHH
Q 018919 283 SGIFIGRPVVY 293 (349)
Q Consensus 283 ~~V~ig~~~l~ 293 (349)
|.|.||+..+.
T Consensus 362 d~V~igt~~~~ 372 (555)
T 1jvn_A 362 DKVSIGTDAVY 372 (555)
T ss_dssp SEEEECHHHHH
T ss_pred CEEEECCHHhh
Confidence 99999998754
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0056 Score=54.05 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=83.2
Q ss_pred EeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcC-CcE
Q 018919 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITK-LPI 207 (349)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~pv 207 (349)
+....+.+...+.++.+.+.|++.++++...+. -.+.++.+++.++ +-+
T Consensus 21 v~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~------------------------------~~~~i~~l~~~~~~~~v 70 (214)
T 1wbh_A 21 VIVVKKLEHAVPMAKALVAGGVRVLNVTLRTEC------------------------------AVDAIRAIAKEVPEAIV 70 (214)
T ss_dssp EECCSSGGGHHHHHHHHHHTTCCEEEEESCSTT------------------------------HHHHHHHHHHHCTTSEE
T ss_pred EEECCCHHHHHHHHHHHHHcCCCEEEEeCCChh------------------------------HHHHHHHHHHHCcCCEE
Confidence 333457777788999999999999999865421 1356888888774 445
Q ss_pred EEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 208 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 208 ~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
....+.+.++++.|.++|||+|+..+ . +.+. .+.++.. .++++. |+.|++++.+++++|||.|.+
T Consensus 71 gagtvi~~d~~~~A~~aGAd~v~~p~-----~-----d~~v-~~~~~~~--g~~~i~--G~~t~~e~~~A~~~Gad~v~~ 135 (214)
T 1wbh_A 71 GAGTVLNPQQLAEVTEAGAQFAISPG-----L-----TEPL-LKAATEG--TIPLIP--GISTVSELMLGMDYGLKEFKF 135 (214)
T ss_dssp EEESCCSHHHHHHHHHHTCSCEEESS-----C-----CHHH-HHHHHHS--SSCEEE--EESSHHHHHHHHHTTCCEEEE
T ss_pred eeCEEEEHHHHHHHHHcCCCEEEcCC-----C-----CHHH-HHHHHHh--CCCEEE--ecCCHHHHHHHHHCCCCEEEE
Confidence 55556788999999999999996521 1 1222 2333333 577775 499999999999999999998
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.14 Score=47.23 Aligned_cols=179 Identities=17% Similarity=0.167 Sum_probs=107.9
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+.-.+-.+.++-..+++-.-+.|+.+++ ++ +.+.+.+|..+ . .. -+.+..... .+...+
T Consensus 13 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~a 91 (297)
T 3flu_A 13 VALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGA-NNTVEA 91 (297)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHH
T ss_pred EeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-cCHHHH
Confidence 5666777533333444555777777788987554 32 23456665322 1 22 345666533 466677
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+.. |. |.-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 92 i~la~~a~~~Gadavlv~~--P~-----------y~~~------------~~~~l~~~f~~va~a~~lPiilYn~P~~tg 146 (297)
T 3flu_A 92 IALSQAAEKAGADYTLSVV--PY-----------YNKP------------SQEGIYQHFKTIAEATSIPMIIYNVPGRTV 146 (297)
T ss_dssp HHHHHHHHHTTCSEEEEEC--CC-----------SSCC------------CHHHHHHHHHHHHHHCCSCEEEEECHHHHS
T ss_pred HHHHHHHHHcCCCEEEECC--CC-----------CCCC------------CHHHHHHHHHHHHHhCCCCEEEEECCchhc
Confidence 8899999999999987632 31 1101 111 256678888888999998764
Q ss_pred --cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 --LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 --~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+++...++.+.. +-+|.-+ ..++..+.++.+..++++.|+ +| +..-++.++.+||+++.-+.
T Consensus 147 ~~l~~~~~~~La~~pnivgiKds----------sgd~~~~~~~~~~~~~~f~v~-~G---~d~~~l~~l~~G~~G~is~~ 212 (297)
T 3flu_A 147 VSMTNDTILRLAEIPNIVGVKEA----------SGNIGSNIELINRAPEGFVVL-SG---DDHTALPFMLCGGHGVITVA 212 (297)
T ss_dssp SCCCHHHHHHHTTSTTEEEEEEC----------SCCHHHHHHHHHHSCTTCEEE-EC---CGGGHHHHHHTTCCEEEESG
T ss_pred cCCCHHHHHHHHcCCCEEEEEeC----------CCCHHHHHHHHHhcCCCeEEE-EC---cHHHHHHHHhCCCCEEEech
Confidence 4567777766432 2233222 113455566666665566664 44 22446788999999999887
Q ss_pred HH
Q 018919 290 PV 291 (349)
Q Consensus 290 ~~ 291 (349)
+.
T Consensus 213 an 214 (297)
T 3flu_A 213 AN 214 (297)
T ss_dssp GG
T ss_pred Hh
Confidence 43
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.043 Score=52.13 Aligned_cols=121 Identities=9% Similarity=0.021 Sum_probs=89.0
Q ss_pred CChhHHHHHHHHHHH-cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEE
Q 018919 133 KDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPIL 208 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~-~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~ 208 (349)
.+++.+.+.++++.+ .|++.+.++++++ +++. .+.++.+|+.+ ++++.
T Consensus 141 ~~~e~~~~~a~~~~~~~Gf~~iKik~g~~----------------------------~~~~~~e~v~avr~a~g~~~~l~ 192 (370)
T 1nu5_A 141 GDTARDIDSALEMIETRRHNRFKVKLGAR----------------------------TPAQDLEHIRSIVKAVGDRASVR 192 (370)
T ss_dssp SCHHHHHHHHHHHHHTTSCSEEEEECSSS----------------------------CHHHHHHHHHHHHHHHGGGCEEE
T ss_pred CCHHHHHHHHHHHHHhCCccEEEEecCCC----------------------------ChHHHHHHHHHHHHhcCCCCEEE
Confidence 467777788888888 9999999887642 1122 56788888876 47887
Q ss_pred EEEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-
Q 018919 209 VKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG- 281 (349)
Q Consensus 209 vK~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G- 281 (349)
+..- -+.++ ++.+.+.|++.|- + ...+..++.+.++++.+ ++||++++.+.+..|+.+++..|
T Consensus 193 vDan~~~~~~~a~~~~~~l~~~~i~~iE-------q-P~~~~~~~~~~~l~~~~--~ipIa~dE~~~~~~~~~~~i~~~~ 262 (370)
T 1nu5_A 193 VDVNQGWDEQTASIWIPRLEEAGVELVE-------Q-PVPRANFGALRRLTEQN--GVAILADESLSSLSSAFELARDHA 262 (370)
T ss_dssp EECTTCCCHHHHHHHHHHHHHHTCCEEE-------C-CSCTTCHHHHHHHHHHC--SSEEEESTTCCSHHHHHHHHHTTC
T ss_pred EECCCCCCHHHHHHHHHHHHhcCcceEe-------C-CCCcccHHHHHHHHHhC--CCCEEeCCCCCCHHHHHHHHHhCC
Confidence 7643 24444 4567778988763 1 11234577788888776 79999999999999999999986
Q ss_pred CCEEEEchHH
Q 018919 282 ASGIFIGRPV 291 (349)
Q Consensus 282 A~~V~ig~~~ 291 (349)
+|.|++--..
T Consensus 263 ~d~v~ik~~~ 272 (370)
T 1nu5_A 263 VDAFSLKLCN 272 (370)
T ss_dssp CSEEEECHHH
T ss_pred CCEEEEchhh
Confidence 8999996543
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.23 Score=46.06 Aligned_cols=180 Identities=18% Similarity=0.173 Sum_probs=110.1
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------hCC--CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+.-.+-.+.++-..+++-.-+.|+.+++ ++ +...+.+|..+ ... .+.+...-. .+....
T Consensus 13 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~-~~t~~a 91 (311)
T 3h5d_A 13 TAFITPFHEDGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGT-NDTRDS 91 (311)
T ss_dssp EECCCCBCTTSSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCC-SSHHHH
T ss_pred EeeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-cCHHHH
Confidence 5667777544334555666788888888976543 33 23456665322 222 345566433 456677
Q ss_pred HHHHHHHHHcCC-CEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 139 AQLVRRAERAGF-KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~-~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
.++++.+++.|+ +++.+.. |.. .-| +++ ..+..+.+.+.+++||++=.+
T Consensus 92 i~la~~A~~~Ga~davlv~~--P~y-----------~~~------------s~~~l~~~f~~va~a~~lPiilYn~P~~t 146 (311)
T 3h5d_A 92 IEFVKEVAEFGGFAAGLAIV--PYY-----------NKP------------SQEGMYQHFKAIADASDLPIIIYNIPGRV 146 (311)
T ss_dssp HHHHHHHHHSCCCSEEEEEC--CCS-----------SCC------------CHHHHHHHHHHHHHSCSSCEEEEECHHHH
T ss_pred HHHHHHHHhcCCCcEEEEcC--CCC-----------CCC------------CHHHHHHHHHHHHHhCCCCEEEEeccccc
Confidence 888999999997 9987632 211 101 111 256678888888999998764
Q ss_pred ---cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 ---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 ---~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+++...++.+. ..|+-. .+.. ++..+.++.+..++++.|+ +|. ...++.++.+||+++.-+.
T Consensus 147 g~~l~~~~~~~La~~--pnIvgi------Kdss--d~~~~~~~~~~~~~~f~v~-~G~---d~~~l~~l~~Ga~G~is~~ 212 (311)
T 3h5d_A 147 VVELTPETMLRLADH--PNIIGV------KECT--SLANMAYLIEHKPEEFLIY-TGE---DGDAFHAMNLGADGVISVA 212 (311)
T ss_dssp SSCCCHHHHHHHHTS--TTEEEE------EECS--CHHHHHHHHHHCCSSCEEE-ECC---GGGHHHHHHHTCCEEEEST
T ss_pred CCCCCHHHHHHHhcC--CCEEEE------EeCC--CHHHHHHHHHHcCCCEEEE-ECc---HHHHHHHHHcCCCEEEech
Confidence 466777777764 233210 1122 4556666666665556555 342 2446788999999999998
Q ss_pred HHH
Q 018919 290 PVV 292 (349)
Q Consensus 290 ~~l 292 (349)
+-+
T Consensus 213 an~ 215 (311)
T 3h5d_A 213 SHT 215 (311)
T ss_dssp HHH
T ss_pred hhh
Confidence 654
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0071 Score=57.86 Aligned_cols=115 Identities=12% Similarity=0.059 Sum_probs=85.0
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++...+.++++.+.|++++.+++.+ +.++ .+.++.+|+.+ +.||.+
T Consensus 144 ~~~~~~~~~a~~~~~~Gf~~iKik~g~-----------------------------~~~~~~e~v~avr~a~g~d~~l~v 194 (379)
T 2rdx_A 144 RSEAETRAELARHRAAGYRQFQIKVGA-----------------------------DWQSDIDRIRACLPLLEPGEKAMA 194 (379)
T ss_dssp SCSHHHHHHHHHHHHTTCCEEEEECCS-----------------------------CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccC-----------------------------CHHHHHHHHHHHHHhcCCCCEEEE
Confidence 467778888888999999999988753 1122 57799999887 488888
Q ss_pred EEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
+.- .+.+++ +.+.+.|+ .|- + .-+ .++.+.++++.+ ++||++++.+.+..|+.++++.| +
T Consensus 195 Dan~~~~~~~a~~~~~~l~~~~i-~iE-------~--P~~-~~~~~~~l~~~~--~iPI~~de~i~~~~~~~~~i~~~~~ 261 (379)
T 2rdx_A 195 DANQGWRVDNAIRLARATRDLDY-ILE-------Q--PCR-SYEECQQVRRVA--DQPMKLDECVTGLHMAQRIVADRGA 261 (379)
T ss_dssp ECTTCSCHHHHHHHHHHTTTSCC-EEE-------C--CSS-SHHHHHHHHTTC--CSCEEECTTCCSHHHHHHHHHHTCC
T ss_pred ECCCCCCHHHHHHHHHHHHhCCe-EEe-------C--CcC-CHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHcCCC
Confidence 743 355554 44455666 441 1 112 677777777765 79999999999999999999976 8
Q ss_pred CEEEEch
Q 018919 283 SGIFIGR 289 (349)
Q Consensus 283 ~~V~ig~ 289 (349)
|.|++-.
T Consensus 262 d~v~ik~ 268 (379)
T 2rdx_A 262 EICCLKI 268 (379)
T ss_dssp SEEEEET
T ss_pred CEEEEec
Confidence 9999954
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0078 Score=57.45 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCcEEEEEe---cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCC
Q 018919 193 DEDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 269 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v---~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 269 (349)
.+.++++|+.-.+++.+-.. ...+.++.+.++|+|.|++....|. .....+.+.++++..+ +++|++ |.+.
T Consensus 85 ~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G~----~~~~~~~I~~ik~~~p-~v~Vi~-G~v~ 158 (366)
T 4fo4_A 85 AAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGH----SEGVLQRIRETRAAYP-HLEIIG-GNVA 158 (366)
T ss_dssp HHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCTT----SHHHHHHHHHHHHHCT-TCEEEE-EEEC
T ss_pred HHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCCC----CHHHHHHHHHHHHhcC-CCceEe-eeeC
Confidence 45677777653445544332 2468899999999999998543331 1234566777777653 577776 6689
Q ss_pred CHHHHHHHHHhCCCEEEEc
Q 018919 270 RGTDVFKALALGASGIFIG 288 (349)
Q Consensus 270 ~~~dv~kal~~GA~~V~ig 288 (349)
+.+++.++..+|||+|.+|
T Consensus 159 t~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 159 TAEGARALIEAGVSAVKVG 177 (366)
T ss_dssp SHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHcCCCEEEEe
Confidence 9999999999999999995
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.055 Score=48.56 Aligned_cols=75 Identities=24% Similarity=0.280 Sum_probs=48.8
Q ss_pred HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH-H---------HHHHHHHhCCCEEEEchH
Q 018919 221 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-T---------DVFKALALGASGIFIGRP 290 (349)
Q Consensus 221 a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-~---------dv~kal~~GA~~V~ig~~ 290 (349)
+.+.|.++++.+ ..+ +.++++.++ ..+++.+|||+-. . .+.+++..|||.+.+||+
T Consensus 152 ~~~~G~~g~V~~------------~~e-i~~lr~~~~-~~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~ 217 (246)
T 2yyu_A 152 AKESGLDGVVCS------------ANE-AAFIKERCG-ASFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRS 217 (246)
T ss_dssp HHHHTCCEEECC------------HHH-HHHHHHHHC-TTSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHH
T ss_pred HHHhCCCEEEeC------------HHH-HHHHHHhcC-CCCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHh
Confidence 456777776542 234 666666664 3459999999853 2 367788999999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 291 VVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 291 ~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
++.+ +...+.++.++++++
T Consensus 218 I~~a------~dp~~a~~~l~~~i~ 236 (246)
T 2yyu_A 218 LTRA------ADPLRTYARLQHEWN 236 (246)
T ss_dssp HHTS------SSHHHHHHHHHHHCC
T ss_pred hcCC------CCHHHHHHHHHHHHH
Confidence 8742 112345555555443
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.16 Score=46.67 Aligned_cols=178 Identities=17% Similarity=0.175 Sum_probs=106.7
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+. .+-.+.++-..+++-.-+.|+.+++ ++ +...+.+|-.+ . .. .+.+..... .+-...
T Consensus 7 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~a 84 (294)
T 2ehh_A 7 VALITPFK-EGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGG-NATHEA 84 (294)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC-SCHHHH
T ss_pred eeeecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHH
Confidence 55566765 4434555556777777788886654 33 23456665322 1 22 345555433 455667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+.. |. |.-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 85 i~la~~A~~~Gadavlv~~--P~-----------y~~~------------s~~~l~~~f~~va~a~~lPiilYn~P~~tg 139 (294)
T 2ehh_A 85 VHLTAHAKEVGADGALVVV--PY-----------YNKP------------TQRGLYEHFKTVAQEVDIPIIIYNIPSRTC 139 (294)
T ss_dssp HHHHHHHHHTTCSEEEEEC--CC-----------SSCC------------CHHHHHHHHHHHHHHCCSCEEEEECHHHHS
T ss_pred HHHHHHHHhcCCCEEEECC--CC-----------CCCC------------CHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 8889999999999987642 31 1101 111 256677888888999998664
Q ss_pred --cCHHHHHHHH-HcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 --LTAEDARIAV-QAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 --~~~~~a~~a~-~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++...++. +.. +-+|.-+. .++..+.++.+..++++.|+ +|. -.-++.++.+||+++.-+
T Consensus 140 ~~l~~~~~~~La~~~pnivgiKds~----------gd~~~~~~~~~~~~~~f~v~-~G~---d~~~~~~l~~G~~G~is~ 205 (294)
T 2ehh_A 140 VEISVDTMFKLASECENIVASKEST----------PNMDRISEIVKRLGESFSVL-SGD---DSLTLPMMALGAKGVISV 205 (294)
T ss_dssp CCCCHHHHHHHHHHCTTEEEEEECC----------SCHHHHHHHHHHHCTTSEEE-ESS---GGGHHHHHHTTCCEEEES
T ss_pred cCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEE-ECc---HHHHHHHHHCCCCEEEeC
Confidence 4677777776 532 33333321 12445555655555466654 442 234677899999999998
Q ss_pred hHH
Q 018919 289 RPV 291 (349)
Q Consensus 289 ~~~ 291 (349)
.+-
T Consensus 206 ~an 208 (294)
T 2ehh_A 206 ANN 208 (294)
T ss_dssp GGG
T ss_pred HHH
Confidence 854
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.066 Score=51.49 Aligned_cols=123 Identities=13% Similarity=0.042 Sum_probs=90.3
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC-ch-HHHHHHHHHhc--CCcEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG-KM-DEDVKWLQTIT--KLPIL 208 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~-~~-~~~i~~i~~~~--~~pv~ 208 (349)
.+++...+.++++.+.|++.+.++. +|..+ +. +. .+.++.+|+.+ +++|.
T Consensus 144 ~~~~~~~~~a~~~~~~Gf~~iKik~-spvG~-------------------------~~~~~~~e~v~avr~a~G~d~~l~ 197 (401)
T 2hzg_A 144 DTPQETLERARAARRDGFAAVKFGW-GPIGR-------------------------GTVAADADQIMAAREGLGPDGDLM 197 (401)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEES-TTTTS-------------------------SCHHHHHHHHHHHHHHHCSSSEEE
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEcC-CCCCC-------------------------CHHHHHHHHHHHHHHHhCCCCeEE
Confidence 4677777888888899999999884 33210 22 33 57799999987 68888
Q ss_pred EEEe--c--CHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHH-HhcCCCcEEEecCCCCHHHHHHHHH
Q 018919 209 VKGV--L--TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK-ATQGRIPVFLDGGVRRGTDVFKALA 279 (349)
Q Consensus 209 vK~v--~--~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~-~~~~~ipvia~GGI~~~~dv~kal~ 279 (349)
++.- - +.++ ++.+.+.|++.|-= ...+..++.+.++++ .+ ++||++++.+.+..++.++++
T Consensus 198 vDan~~~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~~--~iPI~~dE~~~~~~~~~~~i~ 267 (401)
T 2hzg_A 198 VDVGQIFGEDVEAAAARLPTLDAAGVLWLEE--------PFDAGALAAHAALAGRGA--RVRIAGGEAAHNFHMAQHLMD 267 (401)
T ss_dssp EECTTTTTTCHHHHHTTHHHHHHTTCSEEEC--------CSCTTCHHHHHHHHTTCC--SSEEEECTTCSSHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCccCHHHHHHHHhhCC--CCCEEecCCcCCHHHHHHHHH
Confidence 8753 4 6655 45677889887631 112345777777776 55 799999999999999999999
Q ss_pred hC-CCEEEEchHH
Q 018919 280 LG-ASGIFIGRPV 291 (349)
Q Consensus 280 ~G-A~~V~ig~~~ 291 (349)
.| +|.|++-...
T Consensus 268 ~~~~d~v~ik~~~ 280 (401)
T 2hzg_A 268 YGRIGFIQIDCGR 280 (401)
T ss_dssp HSCCSEEEECHHH
T ss_pred CCCCCEEEeCcch
Confidence 76 8999996543
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.2 Score=46.06 Aligned_cols=179 Identities=17% Similarity=0.188 Sum_probs=107.0
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|-++.|+.-.+-.+.+.-..+++-.-+.|+.+++ ++ +.+.+.+|..+ . .. .+.+..... .+....
T Consensus 7 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~a 85 (291)
T 3tak_A 7 VAIVTPMLKDGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGA-NSTREA 85 (291)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHH
T ss_pred eeeECCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-CCHHHH
Confidence 5566777533333444555777777788886554 32 23456665322 1 22 345566433 456677
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+.. |.. .-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 86 i~la~~a~~~Gadavlv~~--P~y-----------~~~------------~~~~l~~~f~~ia~a~~lPiilYn~P~~tg 140 (291)
T 3tak_A 86 IELTKAAKDLGADAALLVT--PYY-----------NKP------------TQEGLYQHYKAIAEAVELPLILYNVPGRTG 140 (291)
T ss_dssp HHHHHHHHHHTCSEEEEEC--CCS-----------SCC------------CHHHHHHHHHHHHHHCCSCEEEEECHHHHS
T ss_pred HHHHHHHHhcCCCEEEEcC--CCC-----------CCC------------CHHHHHHHHHHHHHhcCCCEEEEecccccC
Confidence 8899999999999987632 311 101 111 256678888888999998764
Q ss_pred --cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 --LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 --~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+++...++.+.. +-+|.-+. .++..+.++.+..++++.|+ +|. ..-++.++.+||+++.-+.
T Consensus 141 ~~l~~~~~~~La~~pnivgiK~ss----------gd~~~~~~~~~~~~~~f~v~-~G~---d~~~~~~l~~G~~G~is~~ 206 (291)
T 3tak_A 141 VDLSNDTAVRLAEIPNIVGIKDAT----------GDVPRGKALIDALNGKMAVY-SGD---DETAWELMLLGADGNISVT 206 (291)
T ss_dssp CCCCHHHHHHHTTSTTEEEEEECS----------CCHHHHHHHHHHHTTSSEEE-ECC---HHHHHHHHHTTCCEEEESG
T ss_pred CCCCHHHHHHHHcCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEE-ECc---HHHHHHHHHCCCCEEEech
Confidence 4567777766432 22332221 13445556666555566664 442 3456688999999999887
Q ss_pred HH
Q 018919 290 PV 291 (349)
Q Consensus 290 ~~ 291 (349)
+.
T Consensus 207 ~n 208 (291)
T 3tak_A 207 AN 208 (291)
T ss_dssp GG
T ss_pred hh
Confidence 43
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.032 Score=53.62 Aligned_cols=119 Identities=13% Similarity=0.067 Sum_probs=87.8
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK 210 (349)
+++...+.++++.+.|++++.++++.+ +.++ .+.++.+|+.+ +.+|.+.
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~~----------------------------~~~~~~e~v~avR~avg~d~~l~vD 213 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQP----------------------------DGALDIARVTAVRKHLGDAVPLMVD 213 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCCS----------------------------CHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC----------------------------CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 667777888888899999999887531 1223 57799999886 5888886
Q ss_pred Ee--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CC
Q 018919 211 GV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-AS 283 (349)
Q Consensus 211 ~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~ 283 (349)
.- .+.++ ++.+.+.|++.|-= ...+..++.+.++++.+ ++||++++.+.+..++.++++.| +|
T Consensus 214 an~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~~~d 283 (393)
T 2og9_A 214 ANQQWDRPTAQRMCRIFEPFNLVWIEE--------PLDAYDHEGHAALALQF--DTPIATGEMLTSAAEHGDLIRHRAAD 283 (393)
T ss_dssp CTTCCCHHHHHHHHHHHGGGCCSCEEC--------CSCTTCHHHHHHHHHHC--SSCEEECTTCCSHHHHHHHHHTTCCS
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCcccHHHHHHHHHhC--CCCEEeCCCcCCHHHHHHHHHCCCCC
Confidence 42 34555 45566788887631 01233577788888776 79999999999999999999987 89
Q ss_pred EEEEchH
Q 018919 284 GIFIGRP 290 (349)
Q Consensus 284 ~V~ig~~ 290 (349)
.|++--.
T Consensus 284 ~v~ik~~ 290 (393)
T 2og9_A 284 YLMPDAP 290 (393)
T ss_dssp EECCCHH
T ss_pred EEeeCcc
Confidence 9988643
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.012 Score=56.48 Aligned_cols=118 Identities=12% Similarity=0.011 Sum_probs=87.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++...+.++++.+.|++++.+++... +++. .+.++.+|+.+ +++|.+
T Consensus 148 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~----------------------------~~~~~~e~v~avR~a~G~d~~l~v 199 (391)
T 2qgy_A 148 KDTNDYLRQIEKFYGKKYGGIKIYPMLD----------------------------SLSISIQFVEKVREIVGDELPLML 199 (391)
T ss_dssp CCHHHHHHHHHHHHHTTCSCEEECCCCS----------------------------SHHHHHHHHHHHHHHHCSSSCEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccCCC----------------------------hHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4677777888888899999999875320 0123 57799999887 688988
Q ss_pred EEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
+.- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||++++.+.+..++.++++.| +
T Consensus 200 Dan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~~~ 269 (391)
T 2qgy_A 200 DLAVPEDLDQTKSFLKEVSSFNPYWIEE--------PVDGENISLLTEIKNTF--NMKVVTGEKQSGLVHFRELISRNAA 269 (391)
T ss_dssp ECCCCSCHHHHHHHHHHHGGGCCSEEEC--------SSCTTCHHHHHHHHHHC--SSCEEECTTCCSHHHHHHHHHTTCC
T ss_pred EcCCCCCHHHHHHHHHHHHhcCCCeEeC--------CCChhhHHHHHHHHhhC--CCCEEEcCCcCCHHHHHHHHHcCCC
Confidence 753 34544 45566788887631 01234577888888876 79999999999999999999976 8
Q ss_pred CEEEEc
Q 018919 283 SGIFIG 288 (349)
Q Consensus 283 ~~V~ig 288 (349)
|.|++-
T Consensus 270 d~v~ik 275 (391)
T 2qgy_A 270 DIFNPD 275 (391)
T ss_dssp SEECCB
T ss_pred CEEEEC
Confidence 999984
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.055 Score=51.58 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=91.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|++++.+++.++..+ . ..+.+. .+.++.+|+.+ ++++.+
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~-----------~-----------~~~~~~~~e~v~avr~a~g~d~~l~v 205 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVS-----------W-----------APDVKMDLKACAAVREAVGPDIRLMI 205 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTTST-----------T-----------CCCHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCccc-----------c-----------ccchHHHHHHHHHHHHHhCCCCeEEE
Confidence 4667777888888889999999998753210 0 012233 57799999887 588888
Q ss_pred EEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHhC-
Q 018919 210 KGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALG- 281 (349)
Q Consensus 210 K~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~-~~dv~kal~~G- 281 (349)
..- -+.++ ++.+.+.|++.|-= ...+..++.+.++++.+ ++||++++.+.+ ..|+.++++.|
T Consensus 206 Dan~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~~i~~~~ 275 (382)
T 1rvk_A 206 DAFHWYSRTDALALGRGLEKLGFDWIEE--------PMDEQSLSSYKWLSDNL--DIPVVGPESAAGKHWHRAEWIKAGA 275 (382)
T ss_dssp ECCTTCCHHHHHHHHHHHHTTTCSEEEC--------CSCTTCHHHHHHHHHHC--SSCEEECSSCSSHHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCCEEeC--------CCChhhHHHHHHHHhhC--CCCEEEeCCccCcHHHHHHHHHcCC
Confidence 753 34444 45566788887631 01233577788888776 799999999999 99999999986
Q ss_pred CCEEEEchHH
Q 018919 282 ASGIFIGRPV 291 (349)
Q Consensus 282 A~~V~ig~~~ 291 (349)
+|.|++--..
T Consensus 276 ~d~v~ik~~~ 285 (382)
T 1rvk_A 276 CDILRTGVND 285 (382)
T ss_dssp CSEEEECHHH
T ss_pred CCEEeeCchh
Confidence 7999996544
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.39 Score=44.62 Aligned_cols=180 Identities=16% Similarity=0.158 Sum_probs=108.6
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+++-.-+.|+.+++ + ++.+.+.+|..+ . .. .+.+..... .+...
T Consensus 28 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~-~st~e 106 (314)
T 3qze_A 28 MVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGA-NSTRE 106 (314)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHH
T ss_pred EEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-cCHHH
Confidence 36667777533333444455677777788876554 2 334456665322 1 22 345565433 45667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.++++.+++.|++++.+-. |.. .-| +++ ..+..+.+.+.+++||++=.+
T Consensus 107 ai~la~~A~~~Gadavlv~~--P~y-----------~~~------------s~~~l~~~f~~va~a~~lPiilYn~P~~t 161 (314)
T 3qze_A 107 AVALTEAAKSGGADACLLVT--PYY-----------NKP------------TQEGMYQHFRHIAEAVAIPQILYNVPGRT 161 (314)
T ss_dssp HHHHHHHHHHTTCSEEEEEC--CCS-----------SCC------------CHHHHHHHHHHHHHHSCSCEEEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEEEcC--CCC-----------CCC------------CHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 78899999999999987632 311 101 111 256678888888999998765
Q ss_pred ---cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 ---LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 ---~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++...++.+.. +-+|.-+. .++..+.++.+..++++.|+ +|. ..-++.++.+||+++.-+
T Consensus 162 g~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~f~v~-~G~---d~~~l~~l~~Ga~G~is~ 227 (314)
T 3qze_A 162 SCDMLPETVERLSKVPNIIGIKEAT----------GDLQRAKEVIERVGKDFLVY-SGD---DATAVELMLLGGKGNISV 227 (314)
T ss_dssp SCCCCHHHHHHHHTSTTEEEEEECS----------CCHHHHHHHHHHSCTTSEEE-ESC---GGGHHHHHHTTCCEEEES
T ss_pred CCCCCHHHHHHHhcCCCEEEEEcCC----------CCHHHHHHHHHHcCCCeEEE-ecC---hHHHHHHHHCCCCEEEec
Confidence 4567777776532 22332221 13455566666665566664 442 234678899999999988
Q ss_pred hHH
Q 018919 289 RPV 291 (349)
Q Consensus 289 ~~~ 291 (349)
.+-
T Consensus 228 ~an 230 (314)
T 3qze_A 228 TAN 230 (314)
T ss_dssp GGG
T ss_pred HHh
Confidence 743
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.033 Score=50.28 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 193 DEDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.++|+.+|+.+++||+.|.. .++.++..+..+|||+|.+...- + ...++..+.+.++.+ ++.++++ +++.
T Consensus 90 ~~dL~~ir~~v~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~a~---l--~~~~l~~l~~~a~~l--Gl~~lvE--v~~~ 160 (251)
T 1i4n_A 90 PAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARI---L--TAEQIKEIYEAAEEL--GMDSLVE--VHSR 160 (251)
T ss_dssp THHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGG---S--CHHHHHHHHHHHHTT--TCEEEEE--ECSH
T ss_pred HHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHcCCCEEEEeccc---C--CHHHHHHHHHHHHHc--CCeEEEE--eCCH
Confidence 37899999999999999985 44556777999999999986431 1 122344443333334 5677766 6899
Q ss_pred HHHHHHHHh-CCCEEEEch
Q 018919 272 TDVFKALAL-GASGIFIGR 289 (349)
Q Consensus 272 ~dv~kal~~-GA~~V~ig~ 289 (349)
+++..++.+ |++.|++-.
T Consensus 161 eE~~~A~~l~g~~iIGinn 179 (251)
T 1i4n_A 161 EDLEKVFSVIRPKIIGINT 179 (251)
T ss_dssp HHHHHHHTTCCCSEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEeC
Confidence 999999999 999998865
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0044 Score=55.19 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=81.9
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcEEEE
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPILVK 210 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK 210 (349)
..+.+...+.++.+.+.|++.++++...+. -.+.++++++.+ ++-+...
T Consensus 34 ~~~~~~~~~~~~al~~gGv~~iel~~k~~~------------------------------~~~~i~~l~~~~~~~~igag 83 (225)
T 1mxs_A 34 IAREEDILPLADALAAGGIRTLEVTLRSQH------------------------------GLKAIQVLREQRPELCVGAG 83 (225)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEEEESSSTH------------------------------HHHHHHHHHHHCTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCcc------------------------------HHHHHHHHHHhCcccEEeeC
Confidence 356777788899999999999999864321 135678788777 4556666
Q ss_pred EecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 211 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 211 ~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+.+.++++.|.++|+|+|+.. + . +.+ +.+.++.. .++++. |+.|++++.+++++|||.|.+
T Consensus 84 tvl~~d~~~~A~~aGAd~v~~p---~--~-----d~~-v~~~~~~~--g~~~i~--G~~t~~e~~~A~~~Gad~vk~ 145 (225)
T 1mxs_A 84 TVLDRSMFAAVEAAGAQFVVTP---G--I-----TED-ILEAGVDS--EIPLLP--GISTPSEIMMGYALGYRRFKL 145 (225)
T ss_dssp CCCSHHHHHHHHHHTCSSEECS---S--C-----CHH-HHHHHHHC--SSCEEC--EECSHHHHHHHHTTTCCEEEE
T ss_pred eEeeHHHHHHHHHCCCCEEEeC---C--C-----CHH-HHHHHHHh--CCCEEE--eeCCHHHHHHHHHCCCCEEEE
Confidence 6778899999999999999642 1 1 122 22333334 567765 499999999999999999998
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.066 Score=49.57 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH----------HHHHHHHhCCCEE
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----------DVFKALALGASGI 285 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~----------dv~kal~~GA~~V 285 (349)
+.|+.+.++|+|+++.+.+ .+..+++.++ .-.++.++||+-.. .+.+++.+|||.+
T Consensus 162 ~lA~~a~~~G~dGvV~s~~-------------E~~~IR~~~~-~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~i 227 (303)
T 3ru6_A 162 NFSKISYENGLDGMVCSVF-------------ESKKIKEHTS-SNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYI 227 (303)
T ss_dssp HHHHHHHHTTCSEEECCTT-------------THHHHHHHSC-TTSEEEECCCCTTC--------CCSHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCEEEECHH-------------HHHHHHHhCC-CccEEECCCcCcccCCcccccccCCHHHHHHcCCCEE
Confidence 3567788999999877432 1345566654 33488899999332 3557788999999
Q ss_pred EEchHHHH
Q 018919 286 FIGRPVVY 293 (349)
Q Consensus 286 ~ig~~~l~ 293 (349)
.+||+++.
T Consensus 228 VvGr~I~~ 235 (303)
T 3ru6_A 228 VVGRPIYK 235 (303)
T ss_dssp EECHHHHT
T ss_pred EEChHHhC
Confidence 99999874
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.032 Score=53.05 Aligned_cols=120 Identities=16% Similarity=0.183 Sum_probs=86.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|++.+.++++. +++. .+.++.+|+.+ ++++.+
T Consensus 140 ~~~~~~~~~a~~~~~~Gf~~iKik~g~-----------------------------~~~~~~e~v~avr~a~g~~~~l~v 190 (369)
T 2p8b_A 140 ADPENMAEEAASMIQKGYQSFKMKVGT-----------------------------NVKEDVKRIEAVRERVGNDIAIRV 190 (369)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCS-----------------------------CHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CChHHHHHHHHHHHHcCcCEEEEEeCC-----------------------------CHHHHHHHHHHHHHHhCCCCeEEE
Confidence 467777788888889999999988753 1122 56789999887 578877
Q ss_pred EEe--cCHHHHH-H----HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-
Q 018919 210 KGV--LTAEDAR-I----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG- 281 (349)
Q Consensus 210 K~v--~~~~~a~-~----a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G- 281 (349)
..- -+.+++. . +.+.|++.|- + ...+..++.+.++++.+ ++||++++.+.+..++.+++..|
T Consensus 191 Dan~~~~~~~a~~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPI~~dE~~~~~~~~~~~i~~~~ 260 (369)
T 2p8b_A 191 DVNQGWKNSANTLTALRSLGHLNIDWIE-------Q-PVIADDIDAMAHIRSKT--DLPLMIDEGLKSSREMRQIIKLEA 260 (369)
T ss_dssp ECTTTTBSHHHHHHHHHTSTTSCCSCEE-------C-CBCTTCHHHHHHHHHTC--CSCEEESTTCCSHHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCcEEE-------C-CCCcccHHHHHHHHHhC--CCCEEeCCCCCCHHHHHHHHHhCC
Confidence 643 2345554 3 3445666552 1 11234577788887766 79999999999999999999976
Q ss_pred CCEEEEchHH
Q 018919 282 ASGIFIGRPV 291 (349)
Q Consensus 282 A~~V~ig~~~ 291 (349)
+|.|++-...
T Consensus 261 ~d~v~ik~~~ 270 (369)
T 2p8b_A 261 ADKVNIKLMK 270 (369)
T ss_dssp CSEEEECHHH
T ss_pred CCEEEeecch
Confidence 8999997543
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.013 Score=56.17 Aligned_cols=120 Identities=14% Similarity=0.061 Sum_probs=87.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK 210 (349)
.+++...+.++++.+.|++.+.++++++ +.++.+.++.+|+.+ +++|.++
T Consensus 163 ~~~e~~~~~a~~~~~~Gf~~vKik~g~~----------------------------~~~~~e~v~avr~a~g~d~~l~vD 214 (388)
T 2nql_A 163 RTLKARGELAKYWQDRGFNAFKFATPVA----------------------------DDGPAAEIANLRQVLGPQAKIAAD 214 (388)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEGGGC----------------------------TTCHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCCC----------------------------ChHHHHHHHHHHHHhCCCCEEEEE
Confidence 4677777888888899999999987531 111136688888877 6888887
Q ss_pred Ee--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CC
Q 018919 211 GV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-AS 283 (349)
Q Consensus 211 ~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~ 283 (349)
.- -+.++ ++.+.+.|++.|-= ...+..++.+.++++.+ ++||++++.+.+..++.++++.| +|
T Consensus 215 an~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPI~~dE~~~~~~~~~~~i~~~~~d 284 (388)
T 2nql_A 215 MHWNQTPERALELIAEMQPFDPWFAEA--------PVWTEDIAGLEKVSKNT--DVPIAVGEEWRTHWDMRARIERCRIA 284 (388)
T ss_dssp CCSCSCHHHHHHHHHHHGGGCCSCEEC--------CSCTTCHHHHHHHHTSC--CSCEEECTTCCSHHHHHHHHTTSCCS
T ss_pred CCCCCCHHHHHHHHHHHhhcCCCEEEC--------CCChhhHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHcCCCC
Confidence 43 34444 45566788887631 11234577777777765 79999999999999999999976 89
Q ss_pred EEEEchH
Q 018919 284 GIFIGRP 290 (349)
Q Consensus 284 ~V~ig~~ 290 (349)
.|++-..
T Consensus 285 ~v~ik~~ 291 (388)
T 2nql_A 285 IVQPEMG 291 (388)
T ss_dssp EECCCHH
T ss_pred EEEecCC
Confidence 9998543
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.13 Score=47.38 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=107.5
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+.-. -.+.+.-..+++-.-+.|+.+++ + ++...+.+|..+ . .. -+.+..... .+-...
T Consensus 9 ~a~vTPf~~d-~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~a 86 (292)
T 3daq_A 9 VALTTPFTNN-KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGT-NDTEKS 86 (292)
T ss_dssp EECCCCEETT-EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHH
T ss_pred EeeecCcCCC-CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCc-ccHHHH
Confidence 5566676433 33445555777777788986654 2 334456665322 1 22 345666533 456677
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+.. |. |.-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 87 i~la~~a~~~Gadavlv~~--P~-----------y~~~------------~~~~l~~~f~~ia~a~~lPiilYn~P~~tg 141 (292)
T 3daq_A 87 IQASIQAKALGADAIMLIT--PY-----------YNKT------------NQRGLVKHFEAIADAVKLPVVLYNVPSRTN 141 (292)
T ss_dssp HHHHHHHHHHTCSEEEEEC--CC-----------SSCC------------CHHHHHHHHHHHHHHHCSCEEEEECHHHHS
T ss_pred HHHHHHHHHcCCCEEEECC--CC-----------CCCC------------CHHHHHHHHHHHHHhCCCCEEEEecccccC
Confidence 8899999999999987642 21 1101 111 256678888888999998764
Q ss_pred --cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 --LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 --~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++...++.+.. +-+|.-+ ..++..+.++.+..++ ++.|+ +|. ...++.++++||++++-+
T Consensus 142 ~~l~~~~~~~La~~pnivgiK~s----------sgd~~~~~~~~~~~~~~~f~v~-~G~---d~~~~~~l~~G~~G~is~ 207 (292)
T 3daq_A 142 MTIEPETVEILSQHPYIVALKDA----------TNDFEYLEEVKKRIDTNSFALY-SGN---DDNVVEYYQRGGQGVISV 207 (292)
T ss_dssp CCCCHHHHHHHHTSTTEEEEEEC----------CCCHHHHHHHHTTSCTTTSEEE-ESC---GGGHHHHHHTTCCEEEES
T ss_pred CCCCHHHHHHHhcCCCEEEEEeC----------CCCHHHHHHHHHHCCCCCEEEE-ECC---HHHHHHHHhcCCCEEEeC
Confidence 4678777777632 2222221 1134556666665554 56555 332 244778899999999998
Q ss_pred hH
Q 018919 289 RP 290 (349)
Q Consensus 289 ~~ 290 (349)
.+
T Consensus 208 ~~ 209 (292)
T 3daq_A 208 IA 209 (292)
T ss_dssp GG
T ss_pred HH
Confidence 74
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.09 Score=47.71 Aligned_cols=202 Identities=19% Similarity=0.246 Sum_probs=107.0
Q ss_pred CcceeEcCeec--CcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCCCCHHHHHhhCCCceEEEEeecCChh
Q 018919 60 DMNTTVLGFKI--SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (349)
Q Consensus 60 d~s~~l~g~~~--~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~ 136 (349)
++.+++.+..+ . |++||-+ ....+.+.-..+++.++++|+..+-. ++.+. ..+ +.+| + ...+
T Consensus 10 ~~~i~i~~~~iG~~-~~vIAgp--c~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkpr-------ts~--~~~~--g-~~~e 74 (262)
T 1zco_A 10 KTVVKINDVKFGEG-FTIIAGP--CSIESREQIMKVAEFLAEVGIKVLRGGAFKPR-------TSP--YSFQ--G-YGEK 74 (262)
T ss_dssp CCCEEETTEEETSS-CEEEEEC--SBCCCHHHHHHHHHHHHHTTCCEEECBSSCCC-------SST--TSCC--C-CTHH
T ss_pred CceEEECCEEECCC-cEEEEeC--CCCCCHHHHHHHHHHHHHcCCCEEEEEecccC-------CCc--cccc--C-ccHH
Confidence 34444544333 2 8888765 22234455568999999999876542 22211 111 1111 1 1133
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec--
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL-- 213 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~-- 213 (349)
....+.+.+++.|...+.==.|. ... ++-..+ ++- ++..++ +.+ ...++++.+ ++.||++|.-.
T Consensus 75 gl~~l~~~~~~~Gl~~~te~~d~----~~~-~~l~~~-vd~~kIga~~---~~n---~~ll~~~a~-~~kPV~lk~G~~~ 141 (262)
T 1zco_A 75 ALRWMREAADEYGLVTVTEVMDT----RHV-ELVAKY-SDILQIGARN---SQN---FELLKEVGK-VENPVLLKRGMGN 141 (262)
T ss_dssp HHHHHHHHHHHHTCEEEEECCCG----GGH-HHHHHH-CSEEEECGGG---TTC---HHHHHHHTT-SSSCEEEECCTTC
T ss_pred HHHHHHHHHHHcCCcEEEeeCCH----HhH-HHHHhh-CCEEEECccc---ccC---HHHHHHHHh-cCCcEEEecCCCC
Confidence 34444455566787765311121 111 111111 110 011111 111 455777766 79999999864
Q ss_pred CHHHHHHHH----HcCCCEEEEecCCCCCC-CC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHH-----H-HHHHHHh
Q 018919 214 TAEDARIAV----QAGAAGIIVSNHGARQL-DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGT-----D-VFKALAL 280 (349)
Q Consensus 214 ~~~~a~~a~----~~G~d~I~v~~~gg~~~-~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~-----d-v~kal~~ 280 (349)
+++++..++ ..|.+-+.+--.|++.. .. ....+..++.+++.. ++||+++..=.++. . +..+.++
T Consensus 142 t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~--~~pVi~d~sH~~g~~~~v~~~~~aAva~ 219 (262)
T 1zco_A 142 TIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELS--HLPIIVDPSHPAGRRSLVIPLAKAAYAI 219 (262)
T ss_dssp CHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEEECSSTTTCSGGGHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhh--CCCEEEEcCCCCCccchHHHHHHHHHHc
Confidence 677755544 57876666654454432 11 112345666666654 68998876544443 4 3457789
Q ss_pred CCCEEEEchHH
Q 018919 281 GASGIFIGRPV 291 (349)
Q Consensus 281 GA~~V~ig~~~ 291 (349)
||++++|-+-+
T Consensus 220 Ga~Gl~iE~H~ 230 (262)
T 1zco_A 220 GADGIMVEVHP 230 (262)
T ss_dssp TCSEEEEEBCS
T ss_pred CCCEEEEEecC
Confidence 99999999865
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0023 Score=55.11 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=33.5
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
-++|||+.|+|++.+|+.+ +.+||++|..++.-+|.
T Consensus 148 ~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW~ 183 (188)
T 1vkf_A 148 PGRTVIAAGLVETEEEARE-ILKHVSAISTSSRILWK 183 (188)
T ss_dssp TTSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHHT
T ss_pred cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHhC
Confidence 3799999999999999999 99999999999988884
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0096 Score=54.35 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.++++|+.+++|+++.+ +.++++++.+.++|+|+++|.
T Consensus 195 ~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVG 235 (267)
T 3vnd_A 195 ENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISG 235 (267)
T ss_dssp HHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 5779999998899999876 467999999999999999995
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.073 Score=49.27 Aligned_cols=180 Identities=17% Similarity=0.112 Sum_probs=97.1
Q ss_pred hHHHHHHHHHcCCeEEecCC-------------CCCCHHHHH-------hhCC-CceEEEE-eecCChhHHHHHHHHHHH
Q 018919 90 EYATARAASAAGTIMTLSSW-------------STSSVEEVA-------STGP-GIRFFQL-YVYKDRNVVAQLVRRAER 147 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~-------------~~~~~e~i~-------~~~~-~~~~~Ql-~~~~~~~~~~~~~~~~~~ 147 (349)
+...|+.+.++|+..++.+. ...+++++. +..+ .|...-+ ++..++....+.++++++
T Consensus 27 D~~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg~~~~v~~tv~~l~~ 106 (302)
T 3fa4_A 27 DGLSARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADADTGYGGPIMVARTTEQYSR 106 (302)
T ss_dssp SHHHHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEECCCCCCCHHHHHHHHHHHHH
Confidence 44788999999988775321 123555543 2222 2333322 112356666788889999
Q ss_pred cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc---CCcEEEEEec------CH--
Q 018919 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT---KLPILVKGVL------TA-- 215 (349)
Q Consensus 148 ~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~---~~pv~vK~v~------~~-- 215 (349)
+|+.++.|- |.. ..+| .+.. + ...+.+.+. .+.|+..++.. +.++++--.. ..
T Consensus 107 aGaagv~iE-Dq~-~~Kr-----cgh~-~-------gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~glde 171 (302)
T 3fa4_A 107 SGVAAFHIE-DQV-QTKR-----CGHL-A-------GKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEE 171 (302)
T ss_dssp TTCCEEEEC-SBC-CC--------------------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHHH
T ss_pred cCCcEEEEC-CCC-CCcc-----cCCC-C-------CCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHHH
Confidence 999987652 221 1111 0000 0 000122222 44455555442 4454432221 12
Q ss_pred --HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEe---cCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 216 --EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD---GGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 216 --~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~---GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
+-++...++|||.|.+ +| +.+.+.+.++.+.++ ..|+.++ +|-...-.+.+.-++|.+.|..+..
T Consensus 172 Ai~Ra~ay~eAGAD~ifi--~g-------~~~~~ei~~~~~~~~-~~Pl~~n~~~~g~~p~~~~~eL~~lGv~~v~~~~~ 241 (302)
T 3fa4_A 172 SVARLRAARDAGADVGFL--EG-------ITSREMARQVIQDLA-GWPLLLNMVEHGATPSISAAEAKEMGFRIIIFPFA 241 (302)
T ss_dssp HHHHHHHHHTTTCSEEEE--TT-------CCCHHHHHHHHHHTT-TSCEEEECCTTSSSCCCCHHHHHHHTCSEEEETTT
T ss_pred HHHHHHHHHHcCCCEEee--cC-------CCCHHHHHHHHHHhc-CCceeEEEecCCCCCCCCHHHHHHcCCCEEEEchH
Confidence 3356678999999988 32 335677888888873 3677653 3322112344455689999999987
Q ss_pred HHHH
Q 018919 291 VVYS 294 (349)
Q Consensus 291 ~l~~ 294 (349)
.+++
T Consensus 242 ~~ra 245 (302)
T 3fa4_A 242 ALGP 245 (302)
T ss_dssp THHH
T ss_pred HHHH
Confidence 7664
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.073 Score=49.21 Aligned_cols=157 Identities=14% Similarity=0.066 Sum_probs=85.1
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCe-EE-ecCCCC---------CCHH---HHH----hhCCCceEEEEeec
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTI-MT-LSSWST---------SSVE---EVA----STGPGIRFFQLYVY 132 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~-~~-~~~~~~---------~~~e---~i~----~~~~~~~~~Ql~~~ 132 (349)
..|+++.-++. .++.-...++.+.+.|.. ++ ++-.++ .+++ ++. +....|.++.+...
T Consensus 93 ~~p~~~~i~g~----~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~ 168 (311)
T 1jub_A 93 EGPIFFSIAGM----SAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPY 168 (311)
T ss_dssp SSCCEEEECCS----SHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC
T ss_pred CCCEEEEcCCC----CHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 45766664421 233345677778888866 43 321111 1232 222 22234677777665
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+.+...+.++.++++|+++|.++- ....+......+.....+..-......+...... ++.++++++.+ ++||+.
T Consensus 169 ~~~~~~~~~a~~~~~~G~d~i~v~~-~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~ 247 (311)
T 1jub_A 169 FDLVHFDIMAEILNQFPLTYVNSVN-SIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIG 247 (311)
T ss_dssp CSHHHHHHHHHHHTTSCCCEEEECC-CEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEecC-CCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEE
Confidence 4556667778899999999987642 1100000000000000000000000000000112 77899999988 899875
Q ss_pred EE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 210 KG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 210 K~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
-+ +.+++++.+++.+|||+|.+.
T Consensus 248 ~GGI~~~~da~~~l~~GAd~V~vg 271 (311)
T 1jub_A 248 TGGIETGQDAFEHLLCGATMLQIG 271 (311)
T ss_dssp ESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred ECCCCCHHHHHHHHHcCCCEEEEc
Confidence 44 689999999999999999984
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.15 Score=46.66 Aligned_cols=169 Identities=19% Similarity=0.212 Sum_probs=102.3
Q ss_pred hHHHHHHHHHcCCeEEecCC------------CCCCHHHHHh-------hCCCceEEEE---eecCChhHHHHHHHHHHH
Q 018919 90 EYATARAASAAGTIMTLSSW------------STSSVEEVAS-------TGPGIRFFQL---YVYKDRNVVAQLVRRAER 147 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~------------~~~~~e~i~~-------~~~~~~~~Ql---~~~~~~~~~~~~~~~~~~ 147 (349)
+...|+.+.+.|+..++.+. ...+++++.. ..+.|...-+ |. .+++...+.++++++
T Consensus 25 D~~sA~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg-~~~~~~~~~v~~l~~ 103 (275)
T 2ze3_A 25 DVASARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYG-HAPEDVRRTVEHFAA 103 (275)
T ss_dssp SHHHHHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSS-SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCC-CCHHHHHHHHHHHHH
Confidence 44788888888888665331 1235555432 2222332222 32 356677788889999
Q ss_pred cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc---CCcEEEEEecC---------
Q 018919 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT---KLPILVKGVLT--------- 214 (349)
Q Consensus 148 ~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~---~~pv~vK~v~~--------- 214 (349)
+|+.++-|- |...+ +.+ .+.+.+. .+.|+.+++.. ++|+.+-....
T Consensus 104 aGaagv~iE-D~~~~-------------~~k-------~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~ 162 (275)
T 2ze3_A 104 LGVAGVNLE-DATGL-------------TPT-------ELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGAT 162 (275)
T ss_dssp TTCSEEEEE-CBCSS-------------SSS-------CBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSS
T ss_pred cCCcEEEEC-CCcCC-------------CCC-------ccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhcccccc
Confidence 999987653 22100 000 0122222 45677776652 67866555421
Q ss_pred ----H----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec--CCCCHHHHHHHHHhCCCE
Q 018919 215 ----A----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASG 284 (349)
Q Consensus 215 ----~----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G--GI~~~~dv~kal~~GA~~ 284 (349)
. +.++...++|||.|.+- +.++.+.+.++.+.+ ++|+.... +..+. .+.-++|.+.
T Consensus 163 ~~~~~~~ai~Ra~ay~eAGAd~i~~e---------~~~~~~~~~~i~~~~--~~P~n~~~~~~~~~~---~eL~~lGv~~ 228 (275)
T 2ze3_A 163 DEERLAETVRRGQAYADAGADGIFVP---------LALQSQDIRALADAL--RVPLNVMAFPGSPVP---RALLDAGAAR 228 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECT---------TCCCHHHHHHHHHHC--SSCEEEECCTTSCCH---HHHHHTTCSE
T ss_pred chhhHHHHHHHHHHHHHCCCCEEEEC---------CCCCHHHHHHHHHhc--CCCEEEecCCCCCCH---HHHHHcCCcE
Confidence 1 34677889999999882 245677888888888 57776553 34443 3455699999
Q ss_pred EEEchHHHHH
Q 018919 285 IFIGRPVVYS 294 (349)
Q Consensus 285 V~ig~~~l~~ 294 (349)
|..|...+.+
T Consensus 229 v~~~~~~~ra 238 (275)
T 2ze3_A 229 VSFGQSLMLA 238 (275)
T ss_dssp EECTTHHHHH
T ss_pred EEEChHHHHH
Confidence 9999887764
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=96.43 E-value=0.1 Score=49.77 Aligned_cols=118 Identities=15% Similarity=0.115 Sum_probs=84.9
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|++.+.++++++ +++. .+.++.+|+.+ ++++.+
T Consensus 144 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~----------------------------~~~~~~e~v~avr~a~g~~~~l~v 195 (378)
T 2qdd_A 144 GTPDQMLGLIAEAAAQGYRTHSAKIGGS----------------------------DPAQDIARIEAISAGLPDGHRVTF 195 (378)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCSS----------------------------CHHHHHHHHHHHHHSCCTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHhhhheeecCCCC----------------------------ChHHHHHHHHHHHHHhCCCCEEEE
Confidence 4677777888888889999999987653 1122 56799999887 578888
Q ss_pred EEe--cCHHHHHHHHH---cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CC
Q 018919 210 KGV--LTAEDARIAVQ---AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-AS 283 (349)
Q Consensus 210 K~v--~~~~~a~~a~~---~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~ 283 (349)
+.- -+.+++....+ .|+ .| - + --+ .++.+.++++.+ ++||++++.+.+..|+.++++.| +|
T Consensus 196 Dan~~~~~~~a~~~~~~l~~~i-~i--E-----q--P~~-d~~~~~~l~~~~--~iPI~~dE~~~~~~~~~~~i~~~~~d 262 (378)
T 2qdd_A 196 DVNRAWTPAIAVEVLNSVRARD-WI--E-----Q--PCQ-TLDQCAHVARRV--ANPIMLDECLHEFSDHLAAWSRGACE 262 (378)
T ss_dssp ECTTCCCHHHHHHHHTSCCCCC-EE--E-----C--CSS-SHHHHHHHHTTC--CSCEEECTTCCSHHHHHHHHHHTCCS
T ss_pred eCCCCCCHHHHHHHHHHhCCCc-EE--E-----c--CCC-CHHHHHHHHHhC--CCCEEECCCcCCHHHHHHHHHhCCCC
Confidence 743 35666644332 344 22 1 1 112 677777777665 79999999999999999999876 89
Q ss_pred EEEEchHH
Q 018919 284 GIFIGRPV 291 (349)
Q Consensus 284 ~V~ig~~~ 291 (349)
.|++-...
T Consensus 263 ~v~ik~~~ 270 (378)
T 2qdd_A 263 GVKIKPNR 270 (378)
T ss_dssp EEEECHHH
T ss_pred EEEecccc
Confidence 99996644
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.14 Score=47.10 Aligned_cols=182 Identities=18% Similarity=0.107 Sum_probs=103.1
Q ss_pred hHHHHHHHHHcCCeEEecCC------------CCCCHHHHHh-------hCCCceEEEE-eecCChhHHHHHHHHHHHcC
Q 018919 90 EYATARAASAAGTIMTLSSW------------STSSVEEVAS-------TGPGIRFFQL-YVYKDRNVVAQLVRRAERAG 149 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~------------~~~~~e~i~~-------~~~~~~~~Ql-~~~~~~~~~~~~~~~~~~~G 149 (349)
|...|+.+.++|+..++.+. ...+++++.. ..+.|...-+ ++..+++...+.+++++++|
T Consensus 24 D~~sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~v~~l~~aG 103 (290)
T 2hjp_A 24 NPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAG 103 (290)
T ss_dssp SHHHHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTTSSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHHHHHHHHHhC
Confidence 44789999999988775332 1235555432 2223333222 11236677778888999999
Q ss_pred CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc--cCCCCCCch-HHHHHHHHHhc---CCcEEEEEecC---------
Q 018919 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--FQGLDLGKM-DEDVKWLQTIT---KLPILVKGVLT--------- 214 (349)
Q Consensus 150 ~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~--~~~~~~~~~-~~~i~~i~~~~---~~pv~vK~v~~--------- 214 (349)
+.++-|- |... |+..+-.. ...+.+.+. .+.|+.+++.. +.-|+.+.-..
T Consensus 104 a~gv~iE-D~~~--------------~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~a 168 (290)
T 2hjp_A 104 ASAIVME-DKTF--------------PKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEA 168 (290)
T ss_dssp CSEEEEE-CBCS--------------SCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHH
T ss_pred CeEEEEc-CCCC--------------CccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHH
Confidence 9997653 2210 11100000 000112212 45566666653 23344443221
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
.+.++...++|||.|.+- + +.++.+.+.++.+.++.++|++++-.-...-++.+.-++| .+.|..|...+.
T Consensus 169 i~Ra~ay~eAGAd~i~~e--~------~~~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~v~~v~~~~~~~r 240 (290)
T 2hjp_A 169 VRRGQAYEEAGADAILIH--S------RQKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIR 240 (290)
T ss_dssp HHHHHHHHHTTCSEEEEC--C------CCSSSHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTEEEEEECSHHHH
T ss_pred HHHHHHHHHcCCcEEEeC--C------CCCCHHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCCeeEEEechHHHH
Confidence 245788899999999982 2 1345567788888885459999752100112344445699 999999998776
Q ss_pred H
Q 018919 294 S 294 (349)
Q Consensus 294 ~ 294 (349)
+
T Consensus 241 a 241 (290)
T 2hjp_A 241 A 241 (290)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.54 Score=44.00 Aligned_cols=182 Identities=14% Similarity=-0.002 Sum_probs=105.1
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+.-.+-.+.++-..+++-.-+.|+.+++ ++ ....+.+|-.+ . .. .+.+..... .+-...
T Consensus 40 ~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~-~st~ea 118 (332)
T 2r8w_A 40 AFPITPADEAGRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGA-LRTDEA 118 (332)
T ss_dssp ECCCCCBCTTCCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECC-SSHHHH
T ss_pred EEeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHH
Confidence 5566676433323444445677777778876654 33 23456665322 1 22 345566543 455667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+- .|.. .-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 119 i~la~~A~~~Gadavlv~--~P~Y-----------~~~------------s~~~l~~~f~~VA~a~~lPiilYn~P~~tg 173 (332)
T 2r8w_A 119 VALAKDAEAAGADALLLA--PVSY-----------TPL------------TQEEAYHHFAAVAGATALPLAIYNNPTTTR 173 (332)
T ss_dssp HHHHHHHHHHTCSEEEEC--CCCS-----------SCC------------CHHHHHHHHHHHHHHCSSCEEEECCHHHHC
T ss_pred HHHHHHHHhcCCCEEEEC--CCCC-----------CCC------------CHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 788999999999998753 2321 101 111 256677888888999998654
Q ss_pred --cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 --LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 --~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++...++.+.. +-+|.-+. | ... .+..+.++.+..++++.|+ +| +..-++.++.+||+++.-+
T Consensus 174 ~~l~~e~~~~La~~pnIvgiKdss--g-----d~~~~~~~~~~l~~~~~~~f~v~-~G---~D~~~l~~l~~G~~G~is~ 242 (332)
T 2r8w_A 174 FTFSDELLVRLAYIPNIRAIKMPL--P-----ADADYAGELARLRPKLSDDFAIG-YS---GDWGCTDATLAGGDTWYSV 242 (332)
T ss_dssp CCCCHHHHHHHHTSTTEEEEEECC--C-----TTCCHHHHHHHHTTTSCTTCEEE-EC---CHHHHHHHHHTTCSEEEES
T ss_pred cCCCHHHHHHHHcCCCEEEEEeCC--C-----CchhHHHHHHHHHHhcCCCEEEE-eC---chHHHHHHHHCCCCEEEeC
Confidence 4667777776531 22333221 1 000 1445555555444445544 34 2456778889999999998
Q ss_pred hHH
Q 018919 289 RPV 291 (349)
Q Consensus 289 ~~~ 291 (349)
.+.
T Consensus 243 ~an 245 (332)
T 2r8w_A 243 VAG 245 (332)
T ss_dssp GGG
T ss_pred HHH
Confidence 744
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.59 Score=43.12 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=104.6
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+.-.+-.+.++-..+++-.-+.|+.+++ ++ +...+.+|..+ . .. .+.+...-. .+-...
T Consensus 17 ~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~-~~t~~a 95 (303)
T 2wkj_A 17 AALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGC-VSTAES 95 (303)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCC-SSHHHH
T ss_pred EeeEcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHH
Confidence 5566776433323444445777777788886654 33 23456665322 1 22 345555432 455667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcC-CcEEEEEe----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITK-LPILVKGV---- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~-~pv~vK~v---- 212 (349)
.++++.+++.|++++.+-. |.. .-| +.+ ..+..+.+.+.++ +||++=.+
T Consensus 96 i~la~~A~~~Gadavlv~~--P~y-----------~~~------------s~~~l~~~f~~va~a~~~lPiilYn~P~~t 150 (303)
T 2wkj_A 96 QQLAASAKRYGFDAVSAVT--PFY-----------YPF------------SFEEHCDHYRAIIDSADGLPMVVYNIPALS 150 (303)
T ss_dssp HHHHHHHHHHTCSEEEEEC--CCS-----------SCC------------CHHHHHHHHHHHHHHHTTCCEEEEECHHHH
T ss_pred HHHHHHHHhCCCCEEEecC--CCC-----------CCC------------CHHHHHHHHHHHHHhCCCCCEEEEeCcccc
Confidence 8889999999999987642 311 101 111 1456777777888 99998664
Q ss_pred ---cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 ---LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 ---~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++...++.+.. +-+|.-+. + ++..+.++.+. .+++.|+ +|. ..-++.++.+|+++++-+
T Consensus 151 g~~l~~~~~~~La~~pnIvgiK~s~--------g--d~~~~~~~~~~-~~~f~v~-~G~---d~~~~~~l~~G~~G~is~ 215 (303)
T 2wkj_A 151 GVKLTLDQINTLVTLPGVGALXQTS--------G--DLYQMEQIRRE-HPDLVLY-NGY---DNIFASGLLAGADGGIGS 215 (303)
T ss_dssp CCCCCHHHHHHHHTSTTEEEEEECC--------C--CHHHHHHHHHH-CTTCEEE-ECC---GGGHHHHHHHTCCEEEET
T ss_pred CCCCCHHHHHHHhcCCCEEEEeCCC--------C--CHHHHHHHHHh-CCCeEEE-eCc---HHHHHHHHHCCCCEEEeC
Confidence 4667777776531 22333321 1 23344455444 3355555 332 244778899999999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
.+-++
T Consensus 216 ~an~~ 220 (303)
T 2wkj_A 216 TYNIM 220 (303)
T ss_dssp THHHH
T ss_pred HHHhC
Confidence 86543
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0047 Score=56.18 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.|+...+.|++.+.+-.-.+ ...+.+.++.+.+ .+||...|||++- |+.+++ +||+-|.+|+..+.
T Consensus 41 ~~~A~~~~~~Ga~~l~vvDL~~-------~n~~~i~~i~~~~--~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs~a~~ 108 (260)
T 2agk_A 41 SYYAKLYKDRDVQGCHVIKLGP-------NNDDAAREALQES--PQFLQVGGGINDT-NCLEWL-KWASKVIVTSWLFT 108 (260)
T ss_dssp HHHHHHHHHTTCTTCEEEEESS-------SCHHHHHHHHHHS--TTTSEEESSCCTT-THHHHT-TTCSCEEECGGGBC
T ss_pred HHHHHHHHHcCCCEEEEEeCCC-------CCHHHHHHHHhcC--CceEEEeCCCCHH-HHHHHh-cCCCEEEECcHHHh
Confidence 3778999999999988742111 3567788888876 6999999999986 999999 99999999998763
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.58 Score=43.08 Aligned_cols=177 Identities=14% Similarity=0.151 Sum_probs=106.9
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------h-CC--CceEEEEeecCChhH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~-~~--~~~~~Ql~~~~~~~~ 137 (349)
|.++.|+ -.+-.+.+.-..+++-.-+.|+.+++ ++ +...+.+|..+ . .. .+.+..... .+...
T Consensus 14 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~-~~t~~ 91 (301)
T 3m5v_A 14 TALITPF-KNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGS-NATHE 91 (301)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCC-SSHHH
T ss_pred EeeecCc-CCCCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCC-CCHHH
Confidence 5556666 33333445556777777888987654 22 23456665322 1 22 244555432 45667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
..++++.+++.|++++.+.. |.. .-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 92 ai~la~~a~~~Gadavlv~~--P~y-----------~~~------------s~~~l~~~f~~va~a~~lPiilYn~P~~t 146 (301)
T 3m5v_A 92 AVGLAKFAKEHGADGILSVA--PYY-----------NKP------------TQQGLYEHYKAIAQSVDIPVLLYNVPGRT 146 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEEC--CCS-----------SCC------------CHHHHHHHHHHHHHHCSSCEEEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEEEcC--CCC-----------CCC------------CHHHHHHHHHHHHHhCCCCEEEEeCchhh
Confidence 78899999999999987642 311 101 111 256688888888999998764
Q ss_pred ---cCHHHHHHHHHc--CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 213 ---LTAEDARIAVQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 213 ---~~~~~a~~a~~~--G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+++...++.+. .+-+|.-+. .++..+.++.+.+ +++.|+ +|. ...++.++.+|++++.-
T Consensus 147 g~~l~~~~~~~La~~~pnivgiKdss----------gd~~~~~~~~~~~-~~f~v~-~G~---d~~~~~~l~~G~~G~is 211 (301)
T 3m5v_A 147 GCEISTDTIIKLFRDCENIYGVKEAS----------GNIDKCVDLLAHE-PRMMLI-SGE---DAINYPILSNGGKGVIS 211 (301)
T ss_dssp SCCCCHHHHHHHHHHCTTEEEEEECS----------SCHHHHHHHHHHC-TTSEEE-ECC---GGGHHHHHHTTCCEEEE
T ss_pred CcCCCHHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhC-CCeEEE-Ecc---HHHHHHHHHcCCCEEEe
Confidence 467777777665 344444321 1344555666655 466654 442 23467889999999998
Q ss_pred chHH
Q 018919 288 GRPV 291 (349)
Q Consensus 288 g~~~ 291 (349)
+.+-
T Consensus 212 ~~~n 215 (301)
T 3m5v_A 212 VTSN 215 (301)
T ss_dssp SGGG
T ss_pred hHHH
Confidence 8743
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.1 Score=49.45 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=86.9
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|++.+-++++++ +.+. .+.++.+|+.+ ++++.+
T Consensus 139 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~----------------------------~~~~d~~~v~avr~a~g~~~~l~v 190 (366)
T 1tkk_A 139 NSPEEMAADAENYLKQGFQTLKIKVGKD----------------------------DIATDIARIQEIRKRVGSAVKLRL 190 (366)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCSS----------------------------CHHHHHHHHHHHHHHHCSSSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEeCCC----------------------------CHHHHHHHHHHHHHHhCCCCeEEE
Confidence 4677777788888889999999887541 1222 56788999887 578887
Q ss_pred EEe--cCHHH----HHHHHH--cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC
Q 018919 210 KGV--LTAED----ARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 210 K~v--~~~~~----a~~a~~--~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G 281 (349)
..- -+.++ ++.+.+ .|++.|- + ...+..++.+.++++.+ ++||++++.+.+..|+.+++..|
T Consensus 191 Dan~~~~~~~a~~~~~~l~~~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~ipIa~dE~~~~~~~~~~~i~~~ 260 (366)
T 1tkk_A 191 DANQGWRPKEAVTAIRKMEDAGLGIELVE-------Q-PVHKDDLAGLKKVTDAT--DTPIMADESVFTPRQAFEVLQTR 260 (366)
T ss_dssp ECTTCSCHHHHHHHHHHHHHTTCCEEEEE-------C-CSCTTCHHHHHHHHHHC--SSCEEECTTCCSHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhhcCCCceEEE-------C-CCCcccHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHhC
Confidence 742 24444 455666 6665552 1 11234677888888776 79999999999999999999876
Q ss_pred -CCEEEEchHH
Q 018919 282 -ASGIFIGRPV 291 (349)
Q Consensus 282 -A~~V~ig~~~ 291 (349)
+|.|++--..
T Consensus 261 ~~d~v~ik~~~ 271 (366)
T 1tkk_A 261 SADLINIKLMK 271 (366)
T ss_dssp CCSEEEECHHH
T ss_pred CCCEEEeehhh
Confidence 8999996543
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.072 Score=51.22 Aligned_cols=119 Identities=14% Similarity=0.065 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK 210 (349)
+++...+.++++.+.|++.+.++++.+ +.+. .+.++.+|+.+ +++|.+.
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~vKik~g~~----------------------------~~~~d~e~v~avR~avG~d~~l~vD 226 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGGIKLKVGQP----------------------------NCAEDIRRLTAVREALGDEFPLMVD 226 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS----------------------------CHHHHHHHHHHHHHHHCSSSCEEEE
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecCCC----------------------------CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 667777788888899999999887531 1222 56789999886 5888886
Q ss_pred Ee--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CC
Q 018919 211 GV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-AS 283 (349)
Q Consensus 211 ~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~ 283 (349)
.- -+.++ ++.+.+.|++.|-= ...+..++.+.++++.+ ++||++++.+.+..|+.++++.| +|
T Consensus 227 an~~~~~~~ai~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~~~d 296 (398)
T 2pp0_A 227 ANQQWDRETAIRMGRKMEQFNLIWIEE--------PLDAYDIEGHAQLAAAL--DTPIATGEMLTSFREHEQLILGNASD 296 (398)
T ss_dssp CTTCSCHHHHHHHHHHHGGGTCSCEEC--------CSCTTCHHHHHHHHHHC--SSCEEECTTCCSHHHHHHHHHTTCCS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceeeC--------CCChhhHHHHHHHHhhC--CCCEEecCCcCCHHHHHHHHHcCCCC
Confidence 42 34554 45566678886631 01233577788888776 79999999999999999999987 89
Q ss_pred EEEEchH
Q 018919 284 GIFIGRP 290 (349)
Q Consensus 284 ~V~ig~~ 290 (349)
.|++--.
T Consensus 297 ~v~ik~~ 303 (398)
T 2pp0_A 297 FVQPDAP 303 (398)
T ss_dssp EECCCHH
T ss_pred EEEeCcc
Confidence 9988643
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.021 Score=51.73 Aligned_cols=72 Identities=22% Similarity=0.238 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+.|+...+.||++|.+-...+. +.+ ..+.+..+++.+ ++||+.-++|.+..++..++++|||+|.++...+
T Consensus 68 ~~~A~~~~~~GA~~isvlt~~~~-f~G---~~~~l~~i~~~v--~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l 139 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLTEPHR-FGG---SLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVALL 139 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSS-SCC---CHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred HHHHHHHHHcCCCEEEEecchhh-hcc---CHHHHHHHHHhc--CCCEEECCcCCCHHHHHHHHHcCCCEEEECccch
Confidence 47789999999999988432110 111 345667777776 8999999999999999999999999999998866
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.022 Score=54.78 Aligned_cols=119 Identities=14% Similarity=0.084 Sum_probs=88.0
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEE
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPIL 208 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~ 208 (349)
..+++.+.+.++++.+.|++.+-+.+++. ++. .+.++.+|+.+ +.++.
T Consensus 149 ~~~~e~~~~~a~~~~~~G~~~iKiKvG~~-----------------------------~~~d~~~v~avR~a~g~d~~l~ 199 (389)
T 3ozy_A 149 DLTPDQAADELAGWVEQGFTAAKLKVGRA-----------------------------PRKDAANLRAMRQRVGADVEIL 199 (389)
T ss_dssp SCCHHHHHHHHHHHHHTTCSEEEEECCSC-----------------------------HHHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEeeccCCC-----------------------------HHHHHHHHHHHHHHcCCCceEE
Confidence 35778888888888899999999887541 112 46789999887 57888
Q ss_pred EEEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHH-HHhcCCCcEEEecCCCCHHHHHHHHHhC
Q 018919 209 VKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV-KATQGRIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 209 vK~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~-~~~~~~ipvia~GGI~~~~dv~kal~~G 281 (349)
+..- -+.++ ++.+.+.|++.|-= ...+..++.+.+++ +.+ ++||++++.+.+..|+.++++.|
T Consensus 200 vDan~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~~--~iPIa~dE~i~~~~~~~~~i~~~ 269 (389)
T 3ozy_A 200 VDANQSLGRHDALAMLRILDEAGCYWFEE--------PLSIDDIEGHRILRAQGT--PVRIATGENLYTRNAFNDYIRND 269 (389)
T ss_dssp EECTTCCCHHHHHHHHHHHHHTTCSEEES--------CSCTTCHHHHHHHHTTCC--SSEEEECTTCCHHHHHHHHHHTT
T ss_pred EECCCCcCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhcCC--CCCEEeCCCCCCHHHHHHHHHcC
Confidence 7743 34544 45677789888731 11223567777777 655 79999999999999999999975
Q ss_pred -CCEEEEch
Q 018919 282 -ASGIFIGR 289 (349)
Q Consensus 282 -A~~V~ig~ 289 (349)
+|.|++--
T Consensus 270 ~~d~v~ik~ 278 (389)
T 3ozy_A 270 AIDVLQADA 278 (389)
T ss_dssp CCSEECCCT
T ss_pred CCCEEEeCc
Confidence 89998864
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.047 Score=48.18 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=82.1
Q ss_pred EEeecCChhHHHHHHHHHHHcCCCEEEEec-CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCC
Q 018919 128 QLYVYKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKL 205 (349)
Q Consensus 128 Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~-d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~ 205 (349)
......|.....+.++.+.+.|++.+.+.+ |.+. +| +..+ .+.++++++.++.
T Consensus 15 p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f-------------~~------------~~~~~~~~i~~l~~~~~~ 69 (230)
T 1rpx_A 15 PSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRF-------------VP------------NITIGPLVVDSLRPITDL 69 (230)
T ss_dssp EBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSS-------------SS------------CBCCCHHHHHHHGGGCCS
T ss_pred EEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCc-------------cc------------ccccCHHHHHHHHhccCC
Confidence 333456777788889999999999998875 3321 01 0112 5788999988777
Q ss_pred cEEEEEe-cCH-HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCC
Q 018919 206 PILVKGV-LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 283 (349)
Q Consensus 206 pv~vK~v-~~~-~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~ 283 (349)
|+.+-.. .++ +.++.+.++|+|+|.+...... .+...+.+..+.+. ++.++.+=--.+..+.++++..++|
T Consensus 70 ~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~~----~~~~~~~~~~~~~~---g~~ig~~~~p~t~~e~~~~~~~~~d 142 (230)
T 1rpx_A 70 PLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSS----TIHLHRTINQIKSL---GAKAGVVLNPGTPLTAIEYVLDAVD 142 (230)
T ss_dssp CEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTT----CSCHHHHHHHHHHT---TSEEEEEECTTCCGGGGTTTTTTCS
T ss_pred cEEEEEEecCHHHHHHHHHHcCCCEEEEEecCcc----chhHHHHHHHHHHc---CCcEEEEeCCCCCHHHHHHHHhhCC
Confidence 8776654 344 4688899999999998532001 11122344444332 3445554323466777777778999
Q ss_pred EEEEch
Q 018919 284 GIFIGR 289 (349)
Q Consensus 284 ~V~ig~ 289 (349)
.|.+.+
T Consensus 143 ~vl~~~ 148 (230)
T 1rpx_A 143 LVLIMS 148 (230)
T ss_dssp EEEEES
T ss_pred EEEEEE
Confidence 985444
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.12 Score=49.34 Aligned_cols=117 Identities=11% Similarity=0.025 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK 210 (349)
+++.+.+.++++.+.|++.+.++++++ +.+. .+.++.+|+.+ +++|.+.
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~vKik~g~~----------------------------~~~~~~e~v~avR~a~G~~~~l~vD 196 (389)
T 2oz8_A 145 DDDAFVSLFSHAASIGYSAFKIKVGHR----------------------------DFDRDLRRLELLKTCVPAGSKVMID 196 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCS----------------------------SHHHHHHHHHHHHTTSCTTCEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccCCC----------------------------CHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 667777888888899999999887541 1122 56789999887 5788875
Q ss_pred Ee--cCHHH----HHHHHH--cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-
Q 018919 211 GV--LTAED----ARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG- 281 (349)
Q Consensus 211 ~v--~~~~~----a~~a~~--~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G- 281 (349)
.- -+.++ ++.+.+ .+++.|- + ...+..++.+.++++.++ ++||++++.+ +..|+.+++..|
T Consensus 197 an~~~~~~~a~~~~~~l~~~g~~i~~iE-------q-P~~~~~~~~~~~l~~~~~-~iPIa~dE~~-~~~~~~~~i~~~~ 266 (389)
T 2oz8_A 197 PNEAWTSKEALTKLVAIREAGHDLLWVE-------D-PILRHDHDGLRTLRHAVT-WTQINSGEYL-DLQGKRLLLEAHA 266 (389)
T ss_dssp CTTCBCHHHHHHHHHHHHHTTCCCSEEE-------S-CBCTTCHHHHHHHHHHCC-SSEEEECTTC-CHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCceEEe-------C-CCCCcCHHHHHHHHhhCC-CCCEEeCCCC-CHHHHHHHHHcCC
Confidence 42 34444 455667 5555441 1 011235777788877652 6999999999 999999999987
Q ss_pred CCEEEEc
Q 018919 282 ASGIFIG 288 (349)
Q Consensus 282 A~~V~ig 288 (349)
+|.|++.
T Consensus 267 ~d~v~ik 273 (389)
T 2oz8_A 267 ADILNVH 273 (389)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 8999996
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.014 Score=55.53 Aligned_cols=68 Identities=19% Similarity=0.050 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+.++.+.++|+|.|++....|. ....++.+..+++..+ ++||++ |+|.+++++.++..+|||+|.+|
T Consensus 102 ~e~~~~a~~aGvdvI~id~a~G~----~~~~~e~I~~ir~~~~-~~~Vi~-G~V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 102 LQRAEALRDAGADFFCVDVAHAH----AKYVGKTLKSLRQLLG-SRCIMA-GNVATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHHHHHHTTCCEEEEECSCCS----SHHHHHHHHHHHHHHT-TCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----cHhHHHHHHHHHHhcC-CCeEEE-cCcCCHHHHHHHHHcCCCEEEEc
Confidence 46789999999999988632221 1234567777777653 688887 67999999999999999999985
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.67 Score=42.79 Aligned_cols=178 Identities=19% Similarity=0.226 Sum_probs=105.2
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+. .+-.+.++-..+++-.-+.|+.+++ + ++...+.+|-.+ . .. -+.+...-. .+-..+
T Consensus 19 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-~st~~a 96 (306)
T 1o5k_A 19 TAIVTPFK-NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGT-NSTEKT 96 (306)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHH
T ss_pred eeeecCcC-CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCC-ccHHHH
Confidence 55566765 4434555556777777788886654 3 334466665322 1 22 345556533 455667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+.. |. |.-| +++ ..+..+.+.+.+++||++=.+
T Consensus 97 i~la~~A~~~Gadavlv~~--P~-----------y~~~------------s~~~l~~~f~~va~a~~lPiilYn~P~~tg 151 (306)
T 1o5k_A 97 LKLVKQAEKLGANGVLVVT--PY-----------YNKP------------TQEGLYQHYKYISERTDLGIVVYNVPGRTG 151 (306)
T ss_dssp HHHHHHHHHHTCSEEEEEC--CC-----------SSCC------------CHHHHHHHHHHHHTTCSSCEEEEECHHHHS
T ss_pred HHHHHHHHhcCCCEEEECC--CC-----------CCCC------------CHHHHHHHHHHHHHhCCCCEEEEeCccccC
Confidence 8889999999999987642 31 1101 111 145677777788999998664
Q ss_pred --cCHHHHHHHH-Hc-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHhCCCEE
Q 018919 213 --LTAEDARIAV-QA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGI 285 (349)
Q Consensus 213 --~~~~~a~~a~-~~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~dv~kal~~GA~~V 285 (349)
.+++...++. +. .+-+|.-+. .++..+.++.+..++ ++.|+ +|- ..-++.++.+||+++
T Consensus 152 ~~l~~~~~~~La~~~pnIvgiKdss----------gd~~~~~~~~~~~~~~~~~f~v~-~G~---d~~~l~~l~~G~~G~ 217 (306)
T 1o5k_A 152 VNVLPETAARIAADLKNVVGIXEAN----------PDIDQIDRTVSLTKQARSDFMVW-SGN---DDRTFYLLCAGGDGV 217 (306)
T ss_dssp CCCCHHHHHHHHHHCTTEEEEEECC----------CCHHHHHHHHHHHHHHCTTCEEE-ESS---GGGHHHHHHHTCCEE
T ss_pred cCCCHHHHHHHHHhCCCEEEEeCCC----------CCHHHHHHHHHhcCCCCCcEEEE-ECc---HHHHHHHHHCCCCEE
Confidence 4667777776 53 233343321 123344444444432 45553 442 244778899999999
Q ss_pred EEchHH
Q 018919 286 FIGRPV 291 (349)
Q Consensus 286 ~ig~~~ 291 (349)
.-+.+-
T Consensus 218 is~~an 223 (306)
T 1o5k_A 218 ISVVSN 223 (306)
T ss_dssp EESGGG
T ss_pred EecHHH
Confidence 998754
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.36 Score=43.92 Aligned_cols=133 Identities=20% Similarity=0.179 Sum_probs=81.1
Q ss_pred hHHHHHHHHHcCCeEEecCCC------------CCCHHHHHh-------hCCCceEE-EE-eec--CChhHHHHHHHHHH
Q 018919 90 EYATARAASAAGTIMTLSSWS------------TSSVEEVAS-------TGPGIRFF-QL-YVY--KDRNVVAQLVRRAE 146 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~-------~~~~~~~~-Ql-~~~--~~~~~~~~~~~~~~ 146 (349)
|..+|+.+.++|+..++...| ..+++|+.. ..+.++.+ -+ |++ .+++...+.+.++.
T Consensus 26 Da~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~na~rl~ 105 (275)
T 1o66_A 26 ESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELM 105 (275)
T ss_dssp SHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccCCHHHHHHHHHHHH
Confidence 558999999999998864321 235666532 23323222 21 111 25666666667788
Q ss_pred HcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEE---------------EE
Q 018919 147 RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILV---------------KG 211 (349)
Q Consensus 147 ~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v---------------K~ 211 (349)
++|+.++-|- |. .+..+.|+.+.+ .++||+. |.
T Consensus 106 kaGa~aVklE-dg------------------------------~e~~~~I~al~~-agIpV~gHiGLtPQs~~~~ggf~v 153 (275)
T 1o66_A 106 AAGAHMVKLE-GG------------------------------VWMAETTEFLQM-RGIPVCAHIGLTPQSVFAFGGYKV 153 (275)
T ss_dssp HTTCSEEEEE-CS------------------------------GGGHHHHHHHHH-TTCCEEEEEESCGGGTTC------
T ss_pred HcCCcEEEEC-Cc------------------------------HHHHHHHHHHHH-cCCCeEeeeccCceeecccCCeEE
Confidence 8999887542 11 011456777765 3777751 11
Q ss_pred e---c----CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 212 V---L----TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 212 v---~----~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
. . ..++|+.+.++|||.|++-. .+ .+...++.+.+ ++|+|.-|
T Consensus 154 ~grt~~a~~~i~rA~a~~eAGA~~ivlE~---------vp-~~~a~~it~~l--~iP~igIG 203 (275)
T 1o66_A 154 QGRGGKAQALLNDAKAHDDAGAAVVLMEC---------VL-AELAKKVTETV--SCPTIGIG 203 (275)
T ss_dssp -----CHHHHHHHHHHHHHTTCSEEEEES---------CC-HHHHHHHHHHC--SSCEEEES
T ss_pred EeChHHHHHHHHHHHHHHHcCCcEEEEec---------CC-HHHHHHHHHhC--CCCEEEEC
Confidence 1 1 12568889999999999832 22 25677888888 79999765
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.12 Score=47.38 Aligned_cols=179 Identities=20% Similarity=0.170 Sum_probs=104.0
Q ss_pred hHHHHHHHHHcCCeEEecCCC-------------CCCHHHHHh-------hCCCceEEEE-eecCChhHHHHHHHHHHHc
Q 018919 90 EYATARAASAAGTIMTLSSWS-------------TSSVEEVAS-------TGPGIRFFQL-YVYKDRNVVAQLVRRAERA 148 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~-------------~~~~e~i~~-------~~~~~~~~Ql-~~~~~~~~~~~~~~~~~~~ 148 (349)
|...|+.+.++|+..++.+.+ ..+++++.. ..+.|...-+ ++..+++...+.+++++++
T Consensus 30 D~~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~~~~~v~~l~~a 109 (287)
T 3b8i_A 30 DPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERA 109 (287)
T ss_dssp SHHHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEECTTCSSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHHHHHHHHHh
Confidence 447899999999886653221 235555432 2223333322 1123677777888899999
Q ss_pred CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-C--CcEEEEEec-------CHHH
Q 018919 149 GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-K--LPILVKGVL-------TAED 217 (349)
Q Consensus 149 G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~--~pv~vK~v~-------~~~~ 217 (349)
|+.++-|- |... |++-+-.... +.+.+. .+.|+.+++.- + .-|+.+.-. ..+.
T Consensus 110 Ga~gv~iE-D~~~--------------pKrcgh~~gk-l~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~R 173 (287)
T 3b8i_A 110 GIAALTIE-DTLL--------------PAQFGRKSTD-LICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQR 173 (287)
T ss_dssp TCSEEEEE-CBCC--------------SCCTTTCTTC-BCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHH
T ss_pred CCeEEEEc-CCCC--------------ccccCCCCCC-ccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHH
Confidence 99997653 2211 1110000000 122222 45577776653 2 334444322 2356
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEe-cCCCCHHHHHHHHHhCCCEEEEchHHHHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD-GGVRRGTDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~-GGI~~~~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
++...++|||.|.+- +.++.+.+.++.+.+ ++|++.. +|-...-++.+.-++|.+.|..|...+++.
T Consensus 174 a~ay~eAGAd~i~~e---------~~~~~~~~~~i~~~~--~~P~ii~~~g~~~~~~~~eL~~lGv~~v~~~~~~~raa 241 (287)
T 3b8i_A 174 TLAYQEAGADGICLV---------GVRDFAHLEAIAEHL--HIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAA 241 (287)
T ss_dssp HHHHHHTTCSEEEEE---------CCCSHHHHHHHHTTC--CSCEEEECTTCGGGCCHHHHHHTTEEEEECCCHHHHHH
T ss_pred HHHHHHcCCCEEEec---------CCCCHHHHHHHHHhC--CCCEEEeCCCCCCCCCHHHHHHcCCcEEEEChHHHHHH
Confidence 788999999999983 244567788888877 6887743 332222334455579999999999877653
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.088 Score=50.53 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=86.1
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|++++.++++. +.+. .+.++.+|+.+ +++|.+
T Consensus 144 ~~~e~~~~~a~~~~~~Gf~~vKik~g~-----------------------------~~~~~~e~v~avR~a~g~d~~l~v 194 (397)
T 2qde_A 144 GEPEAVAEEALAVLREGFHFVKLKAGG-----------------------------PLKADIAMVAEVRRAVGDDVDLFI 194 (397)
T ss_dssp SCHHHHHHHHHHHHHHTCSCEEEECCS-----------------------------CHHHHHHHHHHHHHHHCTTSCEEE
T ss_pred CCHHHHHHHHHHHHHhhhhheeecccC-----------------------------CHHHHHHHHHHHHHhhCCCCEEEE
Confidence 467777788888888999999988742 1122 56789999886 588887
Q ss_pred EEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
..- -+.++ ++.+.+.|++.|-= ...+..++.+.++++.+ ++||++++.+.+..++.++++.| +
T Consensus 195 Dan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~~~ 264 (397)
T 2qde_A 195 DINGAWTYDQALTTIRALEKYNLSKIEQ--------PLPAWDLDGMARLRGKV--ATPIYADESAQELHDLLAIINKGAA 264 (397)
T ss_dssp ECTTCCCHHHHHHHHHHHGGGCCSCEEC--------CSCTTCHHHHHHHHTTC--SSCEEESTTCCSHHHHHHHHHHTCC
T ss_pred ECCCCCCHHHHHHHHHHHHhCCCCEEEC--------CCChhhHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHcCCC
Confidence 642 34554 45566778887631 01223567777777665 79999999999999999999976 8
Q ss_pred CEEEEch
Q 018919 283 SGIFIGR 289 (349)
Q Consensus 283 ~~V~ig~ 289 (349)
|.|++--
T Consensus 265 d~v~ik~ 271 (397)
T 2qde_A 265 DGLMIKT 271 (397)
T ss_dssp SEEEECH
T ss_pred CEEEEec
Confidence 9999854
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.038 Score=49.80 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=81.2
Q ss_pred eecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcE
Q 018919 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPI 207 (349)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv 207 (349)
|...+.+.+.+-++.+.++|++++++.+=.+ |... .+.++++.+.. +.|+
T Consensus 67 Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~----------------------------dg~iD~~~~~~Li~~a~~~~v 118 (256)
T 1twd_A 67 YSDGEFAAILEDVRTVRELGFPGLVTGVLDV----------------------------DGNVDMPRMEKIMAAAGPLAV 118 (256)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCT----------------------------TSSBCHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC----------------------------CCCcCHHHHHHHHHHhCCCcE
Confidence 4333445677888899999999998754221 1222 45566666554 6776
Q ss_pred EEEEe----cCHHH-HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 208 LVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 208 ~vK~v----~~~~~-a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
..--. .++.. .+.+.+.|++.|-.|+... .....++.|.++.+..+ ++.|++.|||+. +.+.+.+..|+
T Consensus 119 TFHRAfD~~~d~~~ale~L~~lG~~rILTSG~~~----~a~~g~~~L~~Lv~~a~-~i~Im~GgGv~~-~Ni~~l~~tGv 192 (256)
T 1twd_A 119 TFHRAFDMCANPLYTLNNLAELGIARVLTSGQKS----DALQGLSKIMELIAHRD-APIIMAGAGVRA-ENLHHFLDAGV 192 (256)
T ss_dssp EECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSS----STTTTHHHHHHHHTSSS-CCEEEEESSCCT-TTHHHHHHHTC
T ss_pred EEECchhccCCHHHHHHHHHHcCCCEEECCCCCC----CHHHHHHHHHHHHHhhC-CcEEEecCCcCH-HHHHHHHHcCC
Confidence 65332 34544 5778899999998754311 22334556666665544 899999999976 55656568899
Q ss_pred CEEEEc
Q 018919 283 SGIFIG 288 (349)
Q Consensus 283 ~~V~ig 288 (349)
+.+=.+
T Consensus 193 ~e~H~S 198 (256)
T 1twd_A 193 LEVHSS 198 (256)
T ss_dssp SEEEEC
T ss_pred CeEeEC
Confidence 888754
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.13 Score=44.98 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=93.4
Q ss_pred HHHHHHHHcCCeEE--e-cCCCC--CCHHHH---HhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 92 ATARAASAAGTIMT--L-SSWST--SSVEEV---ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 92 ~la~aa~~~G~~~~--~-~~~~~--~~~e~i---~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
.=+++|.++|..++ + -..|+ .+++.. .+..| ....+-+|.+.+.+. ..+.+.+.+.+.+.+|-+-+
T Consensus 13 eda~~a~~~GaD~iGfif~~~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~---i~~~~~~~~ld~vQLHG~e~-- 87 (205)
T 1nsj_A 13 EDALFSVESGADAVGFVFYPKSKRYISPEDARRISVELPPFVFRVGVFVNEEPEK---ILDVASYVQLNAVQLHGEEP-- 87 (205)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHH---HHHHHHHHTCSEEEECSCCC--
T ss_pred HHHHHHHHcCCCEEEEEecCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHH---HHHHHHhhCCCEEEECCCCC--
Confidence 45667777775432 2 22222 345543 33333 455667777666554 34455667999999874321
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe--cCHHHHHHHHHcCCCEEEEecC----CC
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNH----GA 236 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v--~~~~~a~~a~~~G~d~I~v~~~----gg 236 (349)
.+.++.+++ ++|++ |-+ .+.++...+.+..+|++.+... ||
T Consensus 88 ------------------------------~~~~~~l~~--~~~vi-ka~~v~~~~~l~~~~~~~~d~~LlD~~~~~~GG 134 (205)
T 1nsj_A 88 ------------------------------IELCRKIAE--RILVI-KAVGVSNERDMERALNYREFPILLDTKTPEYGG 134 (205)
T ss_dssp ------------------------------HHHHHHHHT--TSEEE-EEEEESSHHHHHHHGGGTTSCEEEEESCSSSSS
T ss_pred ------------------------------HHHHHHHhc--CCCEE-EEEEcCCHHHHHHHHHcCCCEEEECCCCCCCCC
Confidence 144555553 46776 543 4555665665666999999864 44
Q ss_pred CCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCCEEEEchHH
Q 018919 237 RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPV 291 (349)
Q Consensus 237 ~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~~V~ig~~~ 291 (349)
+.. .-.|+.+.++. ..+.|++..||+ +++.+.+++. .++.+|=+.|-+
T Consensus 135 tG~---~fdw~~l~~~~---~~~~p~~LAGGL-~peNV~~ai~~~~p~gVDvsSGv 183 (205)
T 1nsj_A 135 SGK---TFDWSLILPYR---DRFRYLVLSGGL-NPENVRSAIDVVRPFAVDVSSGV 183 (205)
T ss_dssp CCS---CCCGGGTGGGG---GGSSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGG
T ss_pred CCC---ccCHHHHHhhh---cCCCcEEEECCC-CHHHHHHHHHhcCCCEEEECCce
Confidence 321 11233333221 125799999999 6689999987 699999999855
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.18 Score=46.39 Aligned_cols=178 Identities=12% Similarity=0.137 Sum_probs=105.3
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+.-.+ .+.++-..+++-.-+.|+.+++ + ++...+.+|-.+ . .. .+.+...-. .+-...
T Consensus 8 ~a~vTPf~~dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~-~~t~~a 85 (291)
T 3a5f_A 8 VAIITPFTNTG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGS-NNTAAS 85 (291)
T ss_dssp EECCCCBCSSS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHH
T ss_pred eeeEcCcCCCC-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCc-ccHHHH
Confidence 55677775444 5666666788877888987654 3 234456665322 1 22 345566533 455667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+.. |.. .-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 86 i~la~~a~~~Gadavlv~~--P~y-----------~~~------------s~~~l~~~f~~ia~a~~lPiilYn~P~~tg 140 (291)
T 3a5f_A 86 IAMSKWAESIGVDGLLVIT--PYY-----------NKT------------TQKGLVKHFKAVSDAVSTPIIIYNVPGRTG 140 (291)
T ss_dssp HHHHHHHHHTTCSEEEEEC--CCS-----------SCC------------CHHHHHHHC-CTGGGCCSCEEEEECHHHHS
T ss_pred HHHHHHHHhcCCCEEEEcC--CCC-----------CCC------------CHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 8889999999999987642 321 101 111 144566667778999998664
Q ss_pred --cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 --LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 --~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+++...++.+.. +-+|.-+. .++..+.++.+..++++.|+ +|. -..++.++.+||+++.-+.
T Consensus 141 ~~l~~~~~~~La~~pnivgiK~s~----------gd~~~~~~~~~~~~~~f~v~-~G~---d~~~~~~l~~G~~G~is~~ 206 (291)
T 3a5f_A 141 LNITPGTLKELCEDKNIVAVXEAS----------GNISQIAQIKALCGDKLDIY-SGN---DDQIIPILALGGIGVISVL 206 (291)
T ss_dssp CCCCHHHHHHHTTSTTEEEEEECS----------CCHHHHHHHHHHHGGGSEEE-ESC---GGGHHHHHHTTCCEEEESG
T ss_pred CCCCHHHHHHHHcCCCEEEEeCCC----------CCHHHHHHHHHhcCCCeEEE-eCc---HHHHHHHHHCCCCEEEecH
Confidence 4667777776532 22333221 12444555555554455554 442 2346678999999999988
Q ss_pred HH
Q 018919 290 PV 291 (349)
Q Consensus 290 ~~ 291 (349)
+-
T Consensus 207 an 208 (291)
T 3a5f_A 207 AN 208 (291)
T ss_dssp GG
T ss_pred HH
Confidence 53
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.22 Score=45.90 Aligned_cols=178 Identities=12% Similarity=0.088 Sum_probs=103.7
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+ -.+-.+.++-..+++-.-+.|+.+++ + ++...+.+|-.+ . .. .+.+..... .+-...
T Consensus 7 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~a 84 (297)
T 2rfg_A 7 IAMITPF-INGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGS-NNPVEA 84 (297)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC-SSHHHH
T ss_pred EeeecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCC-CCHHHH
Confidence 4445555 33323444555777777788987664 2 233456665322 1 22 345566533 455667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+- .|.. .-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 85 i~la~~A~~~Gadavlv~--~P~y-----------~~~------------s~~~l~~~f~~va~a~~lPiilYn~P~~tg 139 (297)
T 2rfg_A 85 VRYAQHAQQAGADAVLCV--AGYY-----------NRP------------SQEGLYQHFKMVHDAIDIPIIVYNIPPRAV 139 (297)
T ss_dssp HHHHHHHHHHTCSEEEEC--CCTT-----------TCC------------CHHHHHHHHHHHHHHCSSCEEEEECHHHHS
T ss_pred HHHHHHHHhcCCCEEEEc--CCCC-----------CCC------------CHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 888999999999998763 2321 101 111 255677888888999998664
Q ss_pred --cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 --LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 --~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+++...++.+.. +-+|.-+. | ++..+.++.+..++++.|+ +|. -.-++.++.+|+++++-+.
T Consensus 140 ~~l~~~~~~~La~~pnIvgiKds~-g---------d~~~~~~~~~~~~~~f~v~-~G~---d~~~l~~l~~G~~G~is~~ 205 (297)
T 2rfg_A 140 VDIKPETMARLAALPRIVGVKDAT-T---------DLARISRERMLINKPFSFL-SGD---DMTAIAYNASGGQGCISVS 205 (297)
T ss_dssp CCCCHHHHHHHHTSTTEEEEEECS-C---------CTTHHHHHHTTCCSCCEEE-ESC---GGGHHHHHHTTCCEEEESG
T ss_pred CCCCHHHHHHHHcCCCEEEEEeCC-C---------CHHHHHHHHHhcCCCEEEE-eCc---HHHHHHHHHCCCCEEEecH
Confidence 4667777776532 22333321 1 1233444544444455554 442 2346788999999999987
Q ss_pred HH
Q 018919 290 PV 291 (349)
Q Consensus 290 ~~ 291 (349)
+-
T Consensus 206 an 207 (297)
T 2rfg_A 206 AN 207 (297)
T ss_dssp GG
T ss_pred HH
Confidence 53
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.014 Score=57.82 Aligned_cols=233 Identities=15% Similarity=0.184 Sum_probs=133.0
Q ss_pred hhccccccccccc-CCCCCCCcceeEcC-eecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~g-~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|... .+..++|+++++-. ..+..||+.+||.+.+ +..++.+..+.|..+.+... .++++.+
T Consensus 12 ~~~~d~~~~p~~~~~~p~~v~~~t~lt~~l~~~~Piv~a~M~~vt------~~eLa~av~~~Gg~G~i~~~--~~~e~~~ 83 (491)
T 1zfj_A 12 YTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVT------GSKMAIAIARAGGLGVIHKN--MSITEQA 83 (491)
T ss_dssp CCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHTTCEEEECCS--SCHHHHH
T ss_pred CChhhEEeccCcCCcCccccccchhhhhcceecCceEecCchhcc------HHHHHHHHHHcCCceEEeCC--CCHHHHH
Confidence 4799999999876 34578999998854 6788999999998643 45788898999988777532 4554432
Q ss_pred hh------CCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecC--CC--CCC-chhHHhhhhcC--CC--CcCc---
Q 018919 119 ST------GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD--TP--RLG-RREADIKNRFT--LP--PFLT--- 180 (349)
Q Consensus 119 ~~------~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d--~p--~~g-~r~~d~~~~~~--~p--~~~~--- 180 (349)
+. .......++..........+.++.+.+.+...+.+. | .. ..| ...+|+..... .+ +-++
T Consensus 84 ~~i~~v~~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVv-d~~~~~~lvGivt~~Dl~~~~~~~~~v~~im~~~~ 162 (491)
T 1zfj_A 84 EEVRKVKRSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIV-ETLANRKLVGIITNRDMRFISDYNAPISEHMTSEH 162 (491)
T ss_dssp HHHHHHHHHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEE-SCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSC
T ss_pred HHHHHHhhHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-EeCCCCEEEEEEEHHHHhhhccCCCcHHHHcCCCC
Confidence 21 011110011111111234567777778888877553 2 00 000 11233321000 00 0000
Q ss_pred ---ccccC------------C-----CCCC------ch-H-HHHHHHHH-----hcCCcEEEEEec-----CHHHHHHHH
Q 018919 181 ---LKNFQ------------G-----LDLG------KM-D-EDVKWLQT-----ITKLPILVKGVL-----TAEDARIAV 222 (349)
Q Consensus 181 ---~~~~~------------~-----~~~~------~~-~-~~i~~i~~-----~~~~pv~vK~v~-----~~~~a~~a~ 222 (349)
..... + ..|. -. . +.++.+.+ ....++.+.... ..+.++.+.
T Consensus 163 ~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~ 242 (491)
T 1zfj_A 163 LVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALF 242 (491)
T ss_dssp CCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHH
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHH
Confidence 00000 0 0010 00 1 12222221 001112222211 258899999
Q ss_pred HcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 223 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 223 ~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
++|+|.|+++..+|. ....++.+.++++.++ .+|++ .|+|.+.+++.+++.+||++|.+|
T Consensus 243 ~~G~d~ivi~~a~g~----~~~~~~~i~~l~~~~p-~~pvi-~G~v~t~~~a~~~~~~Gad~I~vg 302 (491)
T 1zfj_A 243 EAGADAIVIDTAHGH----SAGVLRKIAEIRAHFP-NRTLI-AGNIATAEGARALYDAGVDVVKVG 302 (491)
T ss_dssp HHTCSEEEECCSCTT----CHHHHHHHHHHHHHCS-SSCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HcCCCeEEEeeecCc----chhHHHHHHHHHHHCC-CCcEe-CCCccCHHHHHHHHHcCCCEEEEC
Confidence 999999999764432 2235677888877763 68998 899999999999999999999888
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.66 Score=42.50 Aligned_cols=108 Identities=20% Similarity=0.256 Sum_probs=74.6
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHhCCCEEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIF 286 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~kal~~GA~~V~ 286 (349)
.+|++|+... +.|+|.+-++- ||-+. +.| -.++.|.+|.+.+ ++|++.=||=..+. ++.+++.+|..-|=
T Consensus 159 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~--~~p~Ld~~~L~~I~~~v--~vpLVlHGgSG~~~e~i~~ai~~Gv~KiN 234 (288)
T 3q94_A 159 ADPAECKHLVEATGIDCLAPALGSVHGPYK--GEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKIN 234 (288)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCBSSCCS--SSCCCCHHHHHHHHHHH--CSCEEECCCTTCCHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHHHCCCEEEEEcCcccCCcC--CCCccCHHHHHHHHHhc--CCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 4688887766 69999999873 55431 222 2578899999988 69999888766554 57789999999999
Q ss_pred EchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 287 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 287 ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
|+|-+.++... .. ..-+....+.+++.++..|..+|..
T Consensus 235 i~Tdl~~a~~~~~r~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 285 (288)
T 3q94_A 235 VNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 285 (288)
T ss_dssp ECHHHHHHHHHHHHHHHHHCSSCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred EChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977654321 00 1123333455666677777777764
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.1 Score=51.06 Aligned_cols=88 Identities=22% Similarity=0.205 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 193 DEDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.++|+.+|+.+++||+.|.. .++.....+..+|||+|.+...- ++ ..++..+.+.++.+ .+.++++ +++.
T Consensus 97 ~~dL~~vr~~v~lPvLrKDFI~d~~Qi~ea~~~GAD~ILLi~a~---l~--~~~l~~l~~~a~~l--gm~~LvE--vh~~ 167 (452)
T 1pii_A 97 FNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSV---LD--DDQYRQLAAVAHSL--EMGVLTE--VSNE 167 (452)
T ss_dssp TTHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTT---CC--HHHHHHHHHHHHHT--TCEEEEE--ECSH
T ss_pred HHHHHHHHHhcCCCeEEEeccCCHHHHHHHHHcCCCEEEEEccc---CC--HHHHHHHHHHHHHc--CCeEEEE--eCCH
Confidence 36899999999999999985 45667778999999999886431 11 23444444444445 6777766 7999
Q ss_pred HHHHHHHHhCCCEEEEch
Q 018919 272 TDVFKALALGASGIFIGR 289 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~ 289 (349)
+++..|+.+||+.|++--
T Consensus 168 eE~~~A~~lga~iIGinn 185 (452)
T 1pii_A 168 EEQERAIALGAKVVGINN 185 (452)
T ss_dssp HHHHHHHHTTCSEEEEES
T ss_pred HHHHHHHHCCCCEEEEeC
Confidence 999999999999998864
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.71 Score=42.59 Aligned_cols=178 Identities=15% Similarity=0.169 Sum_probs=103.7
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+++-.-+.|+.+++ + ++...+.+|-.+ . .. .+.+..... .+-..
T Consensus 21 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~st~~ 99 (304)
T 3cpr_A 21 GVAMVTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGT-NNTRT 99 (304)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCC-SCHHH
T ss_pred EEeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCC-CCHHH
Confidence 35566776433323444445777777788876654 3 234456665322 1 22 345555533 45667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
..++++.+++.|++++.+.. |. |.-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 100 ai~la~~A~~~Gadavlv~~--P~-----------y~~~------------~~~~l~~~f~~ia~a~~lPiilYn~P~~t 154 (304)
T 3cpr_A 100 SVELAEAAASAGADGLLVVT--PY-----------YSKP------------SQEGLLAHFGAIAAATEVPICLYDIPGRS 154 (304)
T ss_dssp HHHHHHHHHHTTCSEEEEEC--CC-----------SSCC------------CHHHHHHHHHHHHHHCCSCEEEEECHHHH
T ss_pred HHHHHHHHHhcCCCEEEECC--CC-----------CCCC------------CHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 78899999999999987642 31 1101 111 256677888888999998764
Q ss_pred ---cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 ---LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 ---~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++...++.+.. +-+|.-+. .++..+.++.+.. ++.|+ +|. ..-++.++.+|++++.-+
T Consensus 155 g~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~--~f~v~-~G~---d~~~l~~l~~G~~G~is~ 218 (304)
T 3cpr_A 155 GIPIESDTMRRLSELPTILAVXDAK----------GDLVAATSLIKET--GLAWY-SGD---DPLNLVWLALGGSGFISV 218 (304)
T ss_dssp SSCCCHHHHHHHTTSTTEEEEEECS----------CCHHHHHHHHHHH--CCEEE-ECS---GGGHHHHHHTTCCEEEES
T ss_pred CcCCCHHHHHHHHcCCCEEEEecCC----------CCHHHHHHHHHhc--CEEEE-ECc---HHHHHHHHHCCCCEEEec
Confidence 4667777776531 22232221 1234444454443 45553 442 234678899999999998
Q ss_pred hHH
Q 018919 289 RPV 291 (349)
Q Consensus 289 ~~~ 291 (349)
.+.
T Consensus 219 ~an 221 (304)
T 3cpr_A 219 IGH 221 (304)
T ss_dssp GGG
T ss_pred HHH
Confidence 754
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.35 Score=45.53 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=105.5
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------h-CC-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-..-.+.+.-..+++-.-+.|+.+++ ++ ....+.+|-.+ . .. -+.+..... .+-..
T Consensus 36 ~~alvTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~-~st~e 114 (343)
T 2v9d_A 36 IPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGG-TNARE 114 (343)
T ss_dssp CCEECCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCS-SCHHH
T ss_pred EEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHH
Confidence 46677787533333444455777777788875543 33 23456665322 1 22 345566533 45566
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.++++.+++.|++++.+-. |.. .-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 115 ai~la~~A~~~Gadavlv~~--P~Y-----------~~~------------s~~~l~~~f~~VA~a~~lPiilYn~P~~t 169 (343)
T 2v9d_A 115 TIELSQHAQQAGADGIVVIN--PYY-----------WKV------------SEANLIRYFEQVADSVTLPVMLYNFPALT 169 (343)
T ss_dssp HHHHHHHHHHHTCSEEEEEC--CSS-----------SCC------------CHHHHHHHHHHHHHTCSSCEEEEECHHHH
T ss_pred HHHHHHHHHhcCCCEEEECC--CCC-----------CCC------------CHHHHHHHHHHHHHhcCCCEEEEeCchhc
Confidence 77889999999999987642 321 101 111 256677888888999998764
Q ss_pred ---cCHHHHHHHH-Hc-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCE
Q 018919 213 ---LTAEDARIAV-QA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASG 284 (349)
Q Consensus 213 ---~~~~~a~~a~-~~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~ 284 (349)
.+++...++. +. .+-+|.-+. .++..+.++.+.++ +++.|+ +| +...++.++.+||++
T Consensus 170 g~~l~~e~~~~La~~~pnIvgiKdss----------gd~~~~~~l~~~~~~~~~~f~v~-~G---~D~~~l~~l~~Ga~G 235 (343)
T 2v9d_A 170 GQDLTPALVKTLADSRSNIIGIKDTI----------DSVAHLRSMIHTVKGAHPHFTVL-CG---YDDHLFNTLLLGGDG 235 (343)
T ss_dssp SSCCCHHHHHHHHHHCTTEEEEEECC----------SCHHHHHHHHHHHHHHCTTCEEE-ES---SGGGHHHHHHTTCCE
T ss_pred CcCCCHHHHHHHHHhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCCCCEEEE-EC---cHHHHHHHHHCCCCE
Confidence 4667777776 53 233333321 12344445554443 456554 44 224577889999999
Q ss_pred EEEchH
Q 018919 285 IFIGRP 290 (349)
Q Consensus 285 V~ig~~ 290 (349)
++-+.+
T Consensus 236 ~is~~a 241 (343)
T 2v9d_A 236 AISASG 241 (343)
T ss_dssp ECCGGG
T ss_pred EEeCHH
Confidence 998874
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.058 Score=51.56 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=84.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|++.+-+.+++. ++. .+.++.+|+.+ ++++.+
T Consensus 144 ~~~e~~~~~a~~~~~~G~~~iKiK~G~~-----------------------------~~~d~~~v~avR~a~g~~~~l~v 194 (378)
T 3eez_A 144 KSVEETRAVIDRYRQRGYVAHSVKIGGD-----------------------------VERDIARIRDVEDIREPGEIVLY 194 (378)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCSC-----------------------------HHHHHHHHHHHTTSCCTTCEEEE
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeccCCC-----------------------------HHHHHHHHHHHHHHcCCCceEEE
Confidence 5677788888888889999999887641 112 46788899887 578888
Q ss_pred EEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
+.- -+.++| +.+.+.|+ .|- +. - +.++.+.++++.+ ++||++++.+.+..|+.++++.| +
T Consensus 195 Dan~~~~~~~a~~~~~~l~~~~i-~iE-------qP--~-~~~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~l~~~~~ 261 (378)
T 3eez_A 195 DVNRGWTRQQALRVMRATEDLHV-MFE-------QP--G-ETLDDIAAIRPLH--SAPVSVDECLVTLQDAARVARDGLA 261 (378)
T ss_dssp ECTTCCCHHHHHHHHHHTGGGTC-CEE-------CC--S-SSHHHHHHTGGGC--CCCEEECTTCCSHHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHHHhccCCe-EEe-------cC--C-CCHHHHHHHHhhC--CCCEEECCCCCCHHHHHHHHHcCCC
Confidence 753 345554 44455665 441 11 1 1566666666655 79999999999999999999976 8
Q ss_pred CEEEEchHH
Q 018919 283 SGIFIGRPV 291 (349)
Q Consensus 283 ~~V~ig~~~ 291 (349)
|.|++....
T Consensus 262 d~v~ik~~~ 270 (378)
T 3eez_A 262 EVFGIKLNR 270 (378)
T ss_dssp SEEEEEHHH
T ss_pred CEEEeCchh
Confidence 999998654
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.044 Score=48.43 Aligned_cols=125 Identities=13% Similarity=0.041 Sum_probs=80.9
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEec-CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEE
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILV 209 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~-d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~v 209 (349)
..|...+.+.++.+.+.|++.+.+.+ |.+. .| +..+ .+.++.+|+.++.|+.+
T Consensus 15 a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~f-------------v~------------~~~~~~~~~~~lr~~~~~~~~v 69 (228)
T 1h1y_A 15 SSDFANLAAEADRMVRLGADWLHMDIMDGHF-------------VP------------NLTIGAPVIQSLRKHTKAYLDC 69 (228)
T ss_dssp GSCGGGHHHHHHHHHHTTCSEEEEEEEBSSS-------------SS------------CBCBCHHHHHHHHTTCCSEEEE
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEEEEecCCc-------------Cc------------chhhCHHHHHHHHhhcCCcEEE
Confidence 35677778889999999999987654 2211 11 1122 57788999887777775
Q ss_pred EEe-cCH-HHHHHHHHcCCCEEEEecCCCCCCCCchhh-HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh---CCC
Q 018919 210 KGV-LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GAS 283 (349)
Q Consensus 210 K~v-~~~-~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~---GA~ 283 (349)
... .++ +.++.+.++|+|+|++ |++.. +.. ...+.++.+. .+.++.+=.-.++.+.++.+.. ++|
T Consensus 70 ~lmv~d~~~~i~~~~~agad~v~v--H~~~~----~~~~~~~~~~i~~~---g~~igv~~~p~t~~e~~~~~~~~~~~~d 140 (228)
T 1h1y_A 70 HLMVTNPSDYVEPLAKAGASGFTF--HIEVS----RDNWQELIQSIKAK---GMRPGVSLRPGTPVEEVFPLVEAENPVE 140 (228)
T ss_dssp EEESSCGGGGHHHHHHHTCSEEEE--EGGGC----TTTHHHHHHHHHHT---TCEEEEEECTTSCGGGGHHHHHSSSCCS
T ss_pred EEEecCHHHHHHHHHHcCCCEEEE--CCCCc----ccHHHHHHHHHHHc---CCCEEEEEeCCCCHHHHHHHHhcCCCCC
Confidence 543 332 4588889999999999 44321 122 3344444332 4555555455677677777776 999
Q ss_pred EEEEchH
Q 018919 284 GIFIGRP 290 (349)
Q Consensus 284 ~V~ig~~ 290 (349)
.|.+++-
T Consensus 141 ~vl~~sv 147 (228)
T 1h1y_A 141 LVLVMTV 147 (228)
T ss_dssp EEEEESS
T ss_pred EEEEEee
Confidence 9999764
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.64 Score=42.58 Aligned_cols=180 Identities=13% Similarity=0.145 Sum_probs=103.0
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+.-.+-.+.+.-..+++-.-+.|+.+++ ++ +...+.+|-.+ . .. .+.+...-. .+-...
T Consensus 7 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~a 85 (292)
T 2ojp_A 7 VAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGA-NATAEA 85 (292)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHH
T ss_pred eeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-ccHHHH
Confidence 5556676433323444445677777778876654 32 23456665322 1 22 345555533 455667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+.. |. |.-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 86 i~la~~a~~~Gadavlv~~--P~-----------y~~~------------s~~~l~~~f~~ia~a~~lPiilYn~P~~tg 140 (292)
T 2ojp_A 86 ISLTQRFNDSGIVGCLTVT--PY-----------YNRP------------SQEGLYQHFKAIAEHTDLPQILYNVPSRTG 140 (292)
T ss_dssp HHHHHHTTTSSCSEEEEEC--CC-----------SSCC------------CHHHHHHHHHHHHTTCSSCEEEECCHHHHS
T ss_pred HHHHHHHHhcCCCEEEECC--CC-----------CCCC------------CHHHHHHHHHHHHHhcCCCEEEEeCcchhc
Confidence 7888888899999987642 31 1101 111 255677777888999998664
Q ss_pred --cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 213 --LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 213 --~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
.+++...++.+. ..|+-. .+. ..++..+.++.+..++++.|+ +|- ...++.++.+|+++++-+.+
T Consensus 141 ~~l~~~~~~~La~~--pnivgi------K~s-~gd~~~~~~~~~~~~~~f~v~-~G~---d~~~~~~l~~G~~G~is~~~ 207 (292)
T 2ojp_A 141 CDLLPETVGRLAKV--KNIIGI------XEA-TGNLTRVNQIKELVSDDFVLL-SGD---DASALDFMQYGGHGVISVTA 207 (292)
T ss_dssp CCCCHHHHHHHHTS--TTEEEC-------CC-SCCTHHHHHHHTTSCTTSBCE-ESC---GGGHHHHHHTTCCEEEESGG
T ss_pred cCCCHHHHHHHHcC--CCEEEE------eCC-CCCHHHHHHHHHhcCCCEEEE-ECc---HHHHHHHHHCCCcEEEeCHH
Confidence 466777777653 333211 111 112344455555444455554 331 24467889999999999875
Q ss_pred H
Q 018919 291 V 291 (349)
Q Consensus 291 ~ 291 (349)
.
T Consensus 208 n 208 (292)
T 2ojp_A 208 N 208 (292)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.13 Score=46.14 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=42.9
Q ss_pred HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH----------HHHHHHHhCCCEEEEchH
Q 018919 221 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----------DVFKALALGASGIFIGRP 290 (349)
Q Consensus 221 a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~----------dv~kal~~GA~~V~ig~~ 290 (349)
..+.|.++++.+. .+ +.++++.++ +.+++.+|||+... .+.+++..|||.+.+||+
T Consensus 158 ~~~~G~~g~V~~~------------~e-i~~lr~~~~-~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~ 223 (245)
T 1eix_A 158 TQKCGLDGVVCSA------------QE-AVRFKQVFG-QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRP 223 (245)
T ss_dssp HHHTTCSEEECCG------------GG-HHHHHHHHC-SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHH
T ss_pred HHHcCCCeEEeCH------------HH-HHHHHHhcC-CCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHH
Confidence 5668888865531 23 556666654 46899999998531 366788999999999999
Q ss_pred HHH
Q 018919 291 VVY 293 (349)
Q Consensus 291 ~l~ 293 (349)
++.
T Consensus 224 I~~ 226 (245)
T 1eix_A 224 VTQ 226 (245)
T ss_dssp HHT
T ss_pred HcC
Confidence 874
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.029 Score=53.85 Aligned_cols=118 Identities=8% Similarity=-0.004 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK 210 (349)
+++.+.+.++++.+.|++.+.+++..+ +.+. .+.++.+|+.+ ++++.+.
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~----------------------------~~~~~~e~v~avr~a~g~~~~l~vD 216 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGGA----------------------------PIEEDRMRIEAVLEEIGKDAQLAVD 216 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSSS----------------------------CHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC----------------------------CHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 566677778888889999999887541 1222 56788999876 5788875
Q ss_pred Ee--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC---
Q 018919 211 GV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--- 281 (349)
Q Consensus 211 ~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G--- 281 (349)
.- -+.+++ +.+.+.|++.|- + ...+..++.+.++++.+ ++||++++.+.+..|+.+++..|
T Consensus 217 an~~~~~~~a~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~~~~ 286 (392)
T 1tzz_A 217 ANGRFNLETGIAYAKMLRDYPLFWYE-------E-VGDPLDYALQAALAEFY--PGPMATGENLFSHQDARNLLRYGGMR 286 (392)
T ss_dssp CTTCCCHHHHHHHHHHHTTSCCSEEE-------C-CSCTTCHHHHHHHTTTC--CSCEEECTTCCSHHHHHHHHHHSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeec-------C-CCChhhHHHHHHHHhhC--CCCEEECCCCCCHHHHHHHHHcCCCc
Confidence 42 345554 445567777652 1 01133567777776655 79999999999999999999988
Q ss_pred --CCEEEEch
Q 018919 282 --ASGIFIGR 289 (349)
Q Consensus 282 --A~~V~ig~ 289 (349)
+|.|++--
T Consensus 287 ~~~d~v~ik~ 296 (392)
T 1tzz_A 287 PDRDWLQFDC 296 (392)
T ss_dssp TTTCEECCCT
T ss_pred cCCcEEEECc
Confidence 89999853
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.094 Score=50.13 Aligned_cols=119 Identities=14% Similarity=0.127 Sum_probs=85.7
Q ss_pred CChhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEE
Q 018919 133 KDRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPIL 208 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~ 208 (349)
.+++.+.+.+++..+. |+..+-+.++.. +++. .+.++.+|+.+ +.++.
T Consensus 147 ~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~----------------------------~~~~d~~~v~avR~a~g~~~~l~ 198 (383)
T 3i4k_A 147 LPLDVAVAEIEERIEEFGNRSFKLKMGAG----------------------------DPAEDTRRVAELAREVGDRVSLR 198 (383)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCSS----------------------------CHHHHHHHHHHHHHTTTTTSEEE
T ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeeCCC----------------------------CHHHHHHHHHHHHHHcCCCCEEE
Confidence 4666666667666666 999998877541 1222 56789999987 47888
Q ss_pred EEEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-
Q 018919 209 VKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG- 281 (349)
Q Consensus 209 vK~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G- 281 (349)
+..- -+.++ ++.+.+.|++.|- + ...+..++.+.++++.. .+||++++.+.+..|+.++++.|
T Consensus 199 vDan~~~~~~~A~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~~ 268 (383)
T 3i4k_A 199 IDINARWDRRTALHYLPILAEAGVELFE-------Q-PTPADDLETLREITRRT--NVSVMADESVWTPAEALAVVKAQA 268 (383)
T ss_dssp EECTTCSCHHHHHHHHHHHHHTTCCEEE-------S-CSCTTCHHHHHHHHHHH--CCEEEESTTCSSHHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHHHHhcCCCEEE-------C-CCChhhHHHHHHHHhhC--CCCEEecCccCCHHHHHHHHHcCC
Confidence 8642 34444 4567778888773 1 11223567778888777 79999999999999999999987
Q ss_pred CCEEEEch
Q 018919 282 ASGIFIGR 289 (349)
Q Consensus 282 A~~V~ig~ 289 (349)
+|.|++--
T Consensus 269 ~d~v~~k~ 276 (383)
T 3i4k_A 269 ADVIALKT 276 (383)
T ss_dssp CSEEEECT
T ss_pred CCEEEEcc
Confidence 89999864
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.074 Score=50.52 Aligned_cols=117 Identities=16% Similarity=0.137 Sum_probs=83.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++...+.++++.+.|++.+.++++.. .+. .+.++.+|+.+ ++++.+
T Consensus 145 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~-----------------------------~~~~~e~v~avr~a~g~~~~l~v 195 (371)
T 2ps2_A 145 GEPEDMRARVAKYRAKGYKGQSVKISGE-----------------------------PVTDAKRITAALANQQPDEFFIV 195 (371)
T ss_dssp CCHHHHHHHHHHHHTTTCCEEEEECCSC-----------------------------HHHHHHHHHHHTTTCCTTCEEEE
T ss_pred CCHHHHHHHHHHHHHhChheEEeecCCC-----------------------------HHHHHHHHHHHHHhcCCCCEEEE
Confidence 4677777888888899999999887531 122 46788888877 578887
Q ss_pred EEe--cCHHHH----HHH-HHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-
Q 018919 210 KGV--LTAEDA----RIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG- 281 (349)
Q Consensus 210 K~v--~~~~~a----~~a-~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G- 281 (349)
..- -+.+++ +.+ .+.|+ .|- + .-+ .++.+.++++.+ ++||++++.+.+..|+.++++.|
T Consensus 196 Dan~~~~~~~a~~~~~~l~~~~~i-~iE-------~--P~~-~~~~~~~l~~~~--~iPI~~dE~~~~~~~~~~~i~~~~ 262 (371)
T 2ps2_A 196 DANGKLSVETALRLLRLLPHGLDF-ALE-------A--PCA-TWRECISLRRKT--DIPIIYDELATNEMSIVKILADDA 262 (371)
T ss_dssp ECTTBCCHHHHHHHHHHSCTTCCC-EEE-------C--CBS-SHHHHHHHHTTC--CSCEEESTTCCSHHHHHHHHHHTC
T ss_pred ECCCCcCHHHHHHHHHHHHhhcCC-cCc-------C--CcC-CHHHHHHHHhhC--CCCEEeCCCcCCHHHHHHHHHhCC
Confidence 643 355554 334 44565 431 1 111 567777777665 79999999999999999999976
Q ss_pred CCEEEEchHH
Q 018919 282 ASGIFIGRPV 291 (349)
Q Consensus 282 A~~V~ig~~~ 291 (349)
+|.|++--..
T Consensus 263 ~d~v~ik~~~ 272 (371)
T 2ps2_A 263 AEGIDLKISK 272 (371)
T ss_dssp CSEEEEEHHH
T ss_pred CCEEEechhh
Confidence 7999996543
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.28 Score=44.79 Aligned_cols=205 Identities=21% Similarity=0.273 Sum_probs=108.8
Q ss_pred CCCcceeEcCeec--CcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCCCCHHHHHhhCCCceEEEEeecCC
Q 018919 58 KIDMNTTVLGFKI--SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTSSVEEVASTGPGIRFFQLYVYKD 134 (349)
Q Consensus 58 ~~d~s~~l~g~~~--~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~~~~e~i~~~~~~~~~~Ql~~~~~ 134 (349)
.-++.+++.+..+ ..|++||-.+ ...+.+.-..+++++++.|.-.+-. .+.+.+ .+ ..||- ..
T Consensus 22 ~~~~~i~i~~~~iG~~~~~vIAgpc--~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprt-------s~--~~f~g---~g 87 (276)
T 1vs1_A 22 RRETVVEVEGVRIGGGSKAVIAGPC--SVESWEQVREAALAVKEAGAHMLRGGAFKPRT-------SP--YSFQG---LG 87 (276)
T ss_dssp CSCCCEEETTEEEBTTBCEEEEECS--BCCCHHHHHHHHHHHHHHTCSEEECBSSCCCS-------ST--TSCCC---CT
T ss_pred CCCcEEEECCEEECCCCeEEEEecC--CCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCC-------Ch--hhhcC---CC
Confidence 3455566665544 2478888765 2224444457899999999886532 222111 11 11221 12
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL 213 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~ 213 (349)
.+....+.+.+++.|...+.==.|. ..-++-..+ ++- ++..++ +.+ ...++++.+ ++.||++|.-.
T Consensus 88 ~~gl~~l~~~~~~~Gl~~~te~~d~-----~~~~~l~~~-vd~~kIgs~~---~~n---~~ll~~~a~-~~kPV~lk~G~ 154 (276)
T 1vs1_A 88 LEGLKLLRRAGDEAGLPVVTEVLDP-----RHVETVSRY-ADMLQIGARN---MQN---FPLLREVGR-SGKPVLLKRGF 154 (276)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCG-----GGHHHHHHH-CSEEEECGGG---TTC---HHHHHHHHH-HTCCEEEECCT
T ss_pred HHHHHHHHHHHHHcCCcEEEecCCH-----HHHHHHHHh-CCeEEECccc---ccC---HHHHHHHHc-cCCeEEEcCCC
Confidence 3444444455567788876411221 111111111 110 011111 111 455666654 69999999864
Q ss_pred --CHHHHHH----HHHcCCCEEEEecCCCCCCCC---chhhHHHHHHHHHHhcCCCcEEEec----CCCC--HHHHHHHH
Q 018919 214 --TAEDARI----AVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVFLDG----GVRR--GTDVFKAL 278 (349)
Q Consensus 214 --~~~~a~~----a~~~G~d~I~v~~~gg~~~~~---~~~~~~~l~~i~~~~~~~ipvia~G----GI~~--~~dv~kal 278 (349)
++++... +...|.+-+++--.|.+.... ....+..++.+++.. ++||+++. |.+. ..=.+.++
T Consensus 155 ~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~--~lpVi~dssH~~g~~~~~~~~~~aAv 232 (276)
T 1vs1_A 155 GNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEAT--HLPVIVDPSHPAGRRSLVPALAKAGL 232 (276)
T ss_dssp TCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHB--SSCEEECCHHHHCSGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHh--CCCEEEeCCCCCCccchHHHHHHHHH
Confidence 5665444 445787656554335533211 223566677777655 68998753 3332 23355678
Q ss_pred HhCCCEEEEchHH
Q 018919 279 ALGASGIFIGRPV 291 (349)
Q Consensus 279 ~~GA~~V~ig~~~ 291 (349)
++||++++|-+-+
T Consensus 233 a~Ga~Gl~IE~H~ 245 (276)
T 1vs1_A 233 AAGADGLIVEVHP 245 (276)
T ss_dssp HTTCSEEEEEBCS
T ss_pred HcCCCEEEEEecC
Confidence 8999999999865
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.88 Score=41.66 Aligned_cols=107 Identities=18% Similarity=0.283 Sum_probs=75.0
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+... +.|+|.+-++. ||-+ .+.+ .++.|.+|.+.+ ++|++.=||=..+ +++.+++.+|..-|
T Consensus 155 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ld~~~L~~I~~~~--~vpLVlHGgSG~~~e~i~~ai~~Gv~Ki 229 (286)
T 1gvf_A 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLY---SKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKV 229 (286)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSCC---SSCCCCCHHHHHHHHHHC--CSCEEECCCTTCCHHHHHHHHHTTEEEE
T ss_pred CCHHHHHHHHHHHCCCEEEeecCccccCc---CCCCccCHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHCCCeEE
Confidence 4688887766 69999999873 5543 2333 578999999987 7999988865555 45778999999999
Q ss_pred EEchHHHHHHhh-------cC-----H-HHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G-----~-~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=|+|-+.++... .. + .-+....+.+++.++..|..+|..
T Consensus 230 Ni~Tdl~~a~~~~~r~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 281 (286)
T 1gvf_A 230 NVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_dssp EECHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred EEChHHHHHHHHHHHHHHHhCcccCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977554321 11 1 123334456777777788888764
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.53 Score=43.08 Aligned_cols=176 Identities=18% Similarity=0.209 Sum_probs=103.5
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+. .+-.+.++-..+++-.-+.|+.+++ ++ ....+.+|-.+ . .. -+.+...-. .+-...
T Consensus 7 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~a 84 (289)
T 2yxg_A 7 PAIITPFK-NKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGS-NCTEEA 84 (289)
T ss_dssp EBCCCCEE-TTEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC-SSHHHH
T ss_pred eeeecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHHH
Confidence 45566665 4434555556777777788886654 33 23456665322 1 22 344555432 455667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+- .|.. .-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 85 i~la~~a~~~Gadavlv~--~P~y-----------~~~------------s~~~l~~~f~~ia~a~~lPiilYn~P~~tg 139 (289)
T 2yxg_A 85 IELSVFAEDVGADAVLSI--TPYY-----------NKP------------TQEGLRKHFGKVAESINLPIVLYNVPSRTA 139 (289)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCCS-----------SCC------------CHHHHHHHHHHHHHHCSSCEEEEECHHHHS
T ss_pred HHHHHHHHhcCCCEEEEC--CCCC-----------CCC------------CHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 888999999999998764 2321 101 111 256677888888999998664
Q ss_pred --cCHHHHHHHH-HcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 --LTAEDARIAV-QAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 --~~~~~a~~a~-~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++...++. +.. +-+|.-+. | ++..+.++.+.. ++.|+ +|. -.-++.++.+|++++.-+
T Consensus 140 ~~l~~~~~~~La~~~pnivgiK~s~--g--------d~~~~~~~~~~~--~f~v~-~G~---d~~~~~~l~~G~~G~is~ 203 (289)
T 2yxg_A 140 VNLEPKTVKLLAEEYSNISAVKEAN--P--------NLSQVSELIHDA--KITVL-SGN---DELTLPIIALGGKGVISV 203 (289)
T ss_dssp CCCCHHHHHHHHHHCTTEEEEEECC--S--------CTHHHHHHHHHT--CSEEE-ESC---GGGHHHHHHTTCCEEEES
T ss_pred cCCCHHHHHHHHHhCCCEEEEEeCC--C--------CHHHHHHHHHhC--CeEEE-ECc---HHHHHHHHHCCCCEEEeC
Confidence 4677777776 532 33333321 1 123344454443 45553 442 234677899999999998
Q ss_pred hHH
Q 018919 289 RPV 291 (349)
Q Consensus 289 ~~~ 291 (349)
.+-
T Consensus 204 ~~n 206 (289)
T 2yxg_A 204 VAN 206 (289)
T ss_dssp GGG
T ss_pred hhh
Confidence 853
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.11 Score=50.12 Aligned_cols=128 Identities=8% Similarity=-0.028 Sum_probs=90.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|++++-+++++... +-. .+.+. .+.++.+|+.+ +.+|.+
T Consensus 178 ~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~-----dg~-----------------~~~~~die~v~avReavG~d~~L~v 235 (412)
T 3stp_A 178 GSIEAMQKEAEEAMKGGYKAFKSRFGYGPK-----DGM-----------------PGMRENLKRVEAVREVIGYDNDLML 235 (412)
T ss_dssp CCHHHHHHHHHHHHTTTCSEEEEECCCCGG-----GHH-----------------HHHHHHHHHHHHHHHHHCSSSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCcc-----ccc-----------------chHHHHHHHHHHHHHHcCCCCeEEE
Confidence 467778888888888999999998865210 000 01122 56789999987 578888
Q ss_pred EEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
..- -+.++ ++.+.+.|++.|-= ...+..++.+.++++.. .+||++++.+.+..|+.++++.| +
T Consensus 236 DaN~~~~~~~Ai~~~~~Le~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~li~~~a~ 305 (412)
T 3stp_A 236 ECYMGWNLDYAKRMLPKLAPYEPRWLEE--------PVIADDVAGYAELNAMN--IVPISGGEHEFSVIGCAELINRKAV 305 (412)
T ss_dssp ECTTCSCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHTC--SSCEEECTTCCSHHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhCC--CCCEEeCCCCCCHHHHHHHHHcCCC
Confidence 643 34555 45566788887731 11233577788888766 79999999999999999999986 7
Q ss_pred CEEEEchHHH
Q 018919 283 SGIFIGRPVV 292 (349)
Q Consensus 283 ~~V~ig~~~l 292 (349)
|.|++--..+
T Consensus 306 D~v~ik~~~~ 315 (412)
T 3stp_A 306 SVLQYDTNRV 315 (412)
T ss_dssp SEECCCHHHH
T ss_pred CEEecChhhc
Confidence 9999876543
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.082 Score=45.62 Aligned_cols=118 Identities=18% Similarity=0.118 Sum_probs=68.9
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcEEE--E
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPILV--K 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~v--K 210 (349)
+.+...+.++.+.+ |++.+.++... + .+.+ .+.++++++.+ +.|+++ |
T Consensus 11 ~~~~~~~~~~~~~~-~v~~iev~~~~-------------~-~~~g--------------~~~i~~l~~~~~~~~i~~~l~ 61 (207)
T 3ajx_A 11 STEAALELAGKVAE-YVDIIELGTPL-------------I-KAEG--------------LSVITAVKKAHPDKIVFADMK 61 (207)
T ss_dssp CHHHHHHHHHHHGG-GCSEEEECHHH-------------H-HHHC--------------THHHHHHHHHSTTSEEEEEEE
T ss_pred CHHHHHHHHHHhhc-cCCEEEECcHH-------------H-HhhC--------------HHHHHHHHHhCCCCeEEEEEE
Confidence 45556666666665 78988875421 0 0000 25788898887 789885 7
Q ss_pred EecC-HHH-HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEE-ecCCCCHHHHHHH-HHhCCCEEE
Q 018919 211 GVLT-AED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-DGGVRRGTDVFKA-LALGASGIF 286 (349)
Q Consensus 211 ~v~~-~~~-a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia-~GGI~~~~dv~ka-l~~GA~~V~ 286 (349)
. .+ ++. ++.+.++|+|+|+++...+ ......+.+..+.. .+++.+ .-...++.+.++. ...|+|.|.
T Consensus 62 ~-~di~~~~~~~a~~~Gad~v~vh~~~~------~~~~~~~~~~~~~~--g~~~gv~~~s~~~p~~~~~~~~~~g~d~v~ 132 (207)
T 3ajx_A 62 T-MDAGELEADIAFKAGADLVTVLGSAD------DSTIAGAVKAAQAH--NKGVVVDLIGIEDKATRAQEVRALGAKFVE 132 (207)
T ss_dssp E-CSCHHHHHHHHHHTTCSEEEEETTSC------HHHHHHHHHHHHHH--TCEEEEECTTCSSHHHHHHHHHHTTCSEEE
T ss_pred e-cCccHHHHHHHHhCCCCEEEEeccCC------hHHHHHHHHHHHHc--CCceEEEEecCCChHHHHHHHHHhCCCEEE
Confidence 4 45 555 8999999999999953221 12222222222222 344422 2233377774444 457999995
Q ss_pred Ech
Q 018919 287 IGR 289 (349)
Q Consensus 287 ig~ 289 (349)
+..
T Consensus 133 ~~~ 135 (207)
T 3ajx_A 133 MHA 135 (207)
T ss_dssp EEC
T ss_pred EEe
Confidence 543
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.035 Score=48.31 Aligned_cols=112 Identities=19% Similarity=0.231 Sum_probs=80.6
Q ss_pred ecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEE
Q 018919 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVK 210 (349)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK 210 (349)
...|.+...+.++.+.+.|++.+.++...+ ...+.++++++.+++|++++
T Consensus 14 ~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~------------------------------~~~~~i~~i~~~~~~~l~vg 63 (212)
T 2v82_A 14 RGITPDEALAHVGAVIDAGFDAVEIPLNSP------------------------------QWEQSIPAIVDAYGDKALIG 63 (212)
T ss_dssp TTCCHHHHHHHHHHHHHHTCCEEEEETTST------------------------------THHHHHHHHHHHHTTTSEEE
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCCh------------------------------hHHHHHHHHHHhCCCCeEEE
Confidence 346777788889999999999998765322 11356788887788888774
Q ss_pred --EecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 211 --GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 211 --~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+.+.+.++.+.++|+|+|.+.. ...+.+ +.++.+ ..+++.. +++.+++.++..+|+|.|.+
T Consensus 64 ~g~~~~~~~i~~a~~~Gad~V~~~~----------~~~~~~-~~~~~~--g~~~~~g--~~t~~e~~~a~~~G~d~v~v 127 (212)
T 2v82_A 64 AGTVLKPEQVDALARMGCQLIVTPN----------IHSEVI-RRAVGY--GMTVCPG--CATATEAFTALEAGAQALKI 127 (212)
T ss_dssp EECCCSHHHHHHHHHTTCCEEECSS----------CCHHHH-HHHHHT--TCEEECE--ECSHHHHHHHHHTTCSEEEE
T ss_pred eccccCHHHHHHHHHcCCCEEEeCC----------CCHHHH-HHHHHc--CCCEEee--cCCHHHHHHHHHCCCCEEEE
Confidence 34678899999999999996321 012233 233333 4555543 89999999999999999997
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.46 Score=43.23 Aligned_cols=132 Identities=23% Similarity=0.268 Sum_probs=81.6
Q ss_pred hHHHHHHHHHcCCeEEecCCC------------CCCHHHHHh-------hCCCc-eEEEE-ee-cCChhHHHHHHHHHHH
Q 018919 90 EYATARAASAAGTIMTLSSWS------------TSSVEEVAS-------TGPGI-RFFQL-YV-YKDRNVVAQLVRRAER 147 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~-------~~~~~-~~~Ql-~~-~~~~~~~~~~~~~~~~ 147 (349)
|...|+.+.++|+..++...+ ..+++|+.. ..+.. ...-+ |+ ..+++...+.+.++.+
T Consensus 38 Da~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pfgsY~s~~~a~~~a~rl~k 117 (275)
T 3vav_A 38 DASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMR 117 (275)
T ss_dssp SHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCTTSCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 458999999999998864322 235666432 22222 22222 11 2466666666777777
Q ss_pred cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe--------------
Q 018919 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-------------- 212 (349)
Q Consensus 148 ~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-------------- 212 (349)
+|++++-|- | ... .+.|+.+++ .++|++--.-
T Consensus 118 aGa~aVklE-d-------------------------------g~~~~~~i~~l~~-~GIpv~gHlgltPq~~~~~gg~~v 164 (275)
T 3vav_A 118 AGAQMVKFE-G-------------------------------GEWLAETVRFLVE-RAVPVCAHVGLTPQSVHAFGGFKV 164 (275)
T ss_dssp TTCSEEEEE-C-------------------------------CGGGHHHHHHHHH-TTCCEEEEEESCGGGHHHHC---C
T ss_pred cCCCEEEEC-C-------------------------------chhHHHHHHHHHH-CCCCEEEecCCCceEEeccCCeEE
Confidence 888886542 1 111 456777765 3777763221
Q ss_pred --cC-------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 213 --LT-------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 213 --~~-------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
.+ .++|+.+.++|||.|++- +.++ +...++.+.+ ++|+|+-|
T Consensus 165 qgrt~~~a~~~i~rA~a~~eAGA~~ivlE---------~vp~-~~a~~It~~l--~iP~igIG 215 (275)
T 3vav_A 165 QGKTEAGAAQLLRDARAVEEAGAQLIVLE---------AVPT-LVAAEVTREL--SIPTIGIG 215 (275)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTCSEEEEE---------SCCH-HHHHHHHHHC--SSCEEEES
T ss_pred EcCCHHHHHHHHHHHHHHHHcCCCEEEec---------CCCH-HHHHHHHHhC--CCCEEEEc
Confidence 11 256888999999999983 2333 3677888888 79999765
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.75 Score=42.44 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=78.8
Q ss_pred cCHHHHHHHHHcCCCEEEEec---CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHhCCCEEEEc
Q 018919 213 LTAEDARIAVQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIG 288 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~kal~~GA~~V~ig 288 (349)
.+|++|+...+.|+|.+-++. ||-+....-.-.++.|.+|.+.++.++|++.=||=..+. ++.+++.+|..-|=|+
T Consensus 172 T~Peea~~Fv~TgvD~LAvaiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~~~vpLVlHGgSG~p~e~i~~ai~~GV~KiNi~ 251 (306)
T 3pm6_A 172 TTPEESEEFVATGINWLAPAFGNVHGNYGPRGVQLDYERLQRINEAVGERVGLVLHGADPFTKEIFEKCIERGVAKVNVN 251 (306)
T ss_dssp CCHHHHHHHHTTTCSEECCCSSCCSSCCCTTCCCCCHHHHHHHHHHHTTTSEEEECSCTTCCHHHHHHHHHTTEEEEEES
T ss_pred CCHHHHHHHHHcCCCEEEEEcCccccCcCCCCCccCHHHHHHHHHHhCCCCCEEeeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 468999988899999888763 554311111225788999998885579999988866655 4778999999999999
Q ss_pred hHHHHHHhh--------cCH-HHHHHHHHHHHHHHHHHHHHcCCCCh
Q 018919 289 RPVVYSLAA--------EGE-KGVRRVLEMLREEFELAMALSGCRSL 326 (349)
Q Consensus 289 ~~~l~~~~~--------~G~-~gv~~~l~~l~~el~~~m~~~G~~~i 326 (349)
|-+..+... ... .-+....+.+++.++..|..+|...-
T Consensus 252 Tdl~~a~~~~~r~~~~~~~~~~~~~~~~~a~~~~v~~~i~~fgs~gk 298 (306)
T 3pm6_A 252 RAVNNEYVKVMREKAGSLPITRLHEEVTNAMQAAVEKIMDMIDSTGK 298 (306)
T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTTCTTG
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 976543211 011 11233345677777888899887653
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=95.92 E-value=1 Score=41.47 Aligned_cols=180 Identities=13% Similarity=0.178 Sum_probs=106.0
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------h-CC-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+++-.-+.|+.+++ ++ +.+.+.+|..+ . .. -+.+...- ..+-..
T Consensus 20 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 98 (304)
T 3l21_A 20 LTAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAG-TYDTAH 98 (304)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHH
T ss_pred EEEEECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CCCHHH
Confidence 36667777533333445555777777788986554 32 23456665322 1 22 34555543 346677
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
..++++.+++.|++++.+.. |. |.-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 99 ai~la~~a~~~Gadavlv~~--P~-----------y~~~------------s~~~l~~~f~~va~a~~lPiilYn~P~~t 153 (304)
T 3l21_A 99 SIRLAKACAAEGAHGLLVVT--PY-----------YSKP------------PQRGLQAHFTAVADATELPMLLYDIPGRS 153 (304)
T ss_dssp HHHHHHHHHHHTCSEEEEEC--CC-----------SSCC------------CHHHHHHHHHHHHTSCSSCEEEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEEECC--CC-----------CCCC------------CHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 78899999999999987642 31 1101 111 256678888888999998764
Q ss_pred ---cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 ---LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 ---~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++...++.+.. +-+|.-+. + ++..+.++.. +.++.|+ +|- ..-++.++.+||+++.-+
T Consensus 154 g~~l~~~~~~~La~~pnIvgiKdss--------g--d~~~~~~~~~--~~~f~v~-~G~---d~~~l~~l~~Ga~G~is~ 217 (304)
T 3l21_A 154 AVPIEPDTIRALASHPNIVGVXDAK--------A--DLHSGAQIMA--DTGLAYY-SGD---DALNLPWLRMGATGFISV 217 (304)
T ss_dssp SSCCCHHHHHHHHTSTTEEEEEECS--------C--CHHHHHHHHH--HHCCEEE-ESS---GGGHHHHHHHTCCEEEES
T ss_pred CCCCCHHHHHHHhcCCCEEEEECCC--------C--CHHHHHHHhc--CCCeEEE-eCc---hHHHHHHHHcCCCEEEec
Confidence 4567777776532 22333221 1 2333333332 2256664 442 244678899999999988
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
.+-++
T Consensus 218 ~~n~~ 222 (304)
T 3l21_A 218 IAHLA 222 (304)
T ss_dssp THHHH
T ss_pred HHhhh
Confidence 85543
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.022 Score=51.81 Aligned_cols=41 Identities=24% Similarity=0.562 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCcEEEE-EecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
++.++++++..++||++. ++.+++++..+.++|||+|.|.+
T Consensus 167 ~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGS 208 (264)
T 1xm3_A 167 PLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNT 208 (264)
T ss_dssp HHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcH
Confidence 567889988889999987 57789999999999999999954
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.7 Score=41.79 Aligned_cols=133 Identities=20% Similarity=0.244 Sum_probs=80.9
Q ss_pred hHHHHHHHHHcCCeEEecCCC------------CCCHHHHHh-------hCCCceEE-EE-ee-cCChhHHHHHHHHHHH
Q 018919 90 EYATARAASAAGTIMTLSSWS------------TSSVEEVAS-------TGPGIRFF-QL-YV-YKDRNVVAQLVRRAER 147 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~-------~~~~~~~~-Ql-~~-~~~~~~~~~~~~~~~~ 147 (349)
|..+|+.+.++|+..++...| ..+++|+.. ..+.++.+ -+ |+ ..+++...+.+.++.+
T Consensus 26 D~~sA~l~e~aG~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~~~~a~~~a~rl~k 105 (264)
T 1m3u_A 26 DYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMR 105 (264)
T ss_dssp SHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCCHHHHHHHHHHHHH
Confidence 558999999999998764211 235666532 22322222 11 11 1256666666677778
Q ss_pred cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE---------------e
Q 018919 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG---------------V 212 (349)
Q Consensus 148 ~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~---------------v 212 (349)
+|++++-| ..- .+..+.|+.+.+. ++||+--. .
T Consensus 106 aGa~aVkl--Egg-----------------------------~e~~~~I~al~~a-gipV~gHiGLtPq~v~~~ggf~v~ 153 (264)
T 1m3u_A 106 AGANMVKI--EGG-----------------------------EWLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYKVQ 153 (264)
T ss_dssp TTCSEEEC--CCS-----------------------------GGGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSCCC
T ss_pred cCCCEEEE--CCc-----------------------------HHHHHHHHHHHHC-CCCeEeeecCCceeecccCCeEEE
Confidence 88888643 210 0124667777663 78886221 1
Q ss_pred -cC-------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 213 -LT-------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 213 -~~-------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
.+ .++|+.+.++|||.|++-. .+ .+...++.+.+ ++|+|+-|
T Consensus 154 grt~~~a~~~i~rA~a~~eAGA~~ivlE~---------vp-~~~a~~it~~l--~iP~igIG 203 (264)
T 1m3u_A 154 GRGDEAGDQLLSDALALEAAGAQLLVLEC---------VP-VELAKRITEAL--AIPVIGIG 203 (264)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTCCEEEEES---------CC-HHHHHHHHHHC--SSCEEEES
T ss_pred eCCHHHHHHHHHHHHHHHHCCCcEEEEec---------CC-HHHHHHHHHhC--CCCEEEeC
Confidence 12 2568889999999999832 22 25677888887 79999765
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.39 Score=44.61 Aligned_cols=177 Identities=14% Similarity=0.105 Sum_probs=104.1
Q ss_pred ceeeccc-ccccccCChhhHHHHHHHHHcCCeEEec-----CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhH
Q 018919 73 PIMIAPT-AMQKMAHPEGEYATARAASAAGTIMTLS-----SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 73 Pi~iApm-~~~~l~~~~~~~~la~aa~~~G~~~~~~-----~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~ 137 (349)
|.++.|+ .-.+-.+.++-..+++-.-+.|+.+++- +....+.+|-.+ . .. -+.+...- . +-..
T Consensus 17 ~a~vTPF~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg-~-st~~ 94 (314)
T 3d0c_A 17 GINIVPFLEGTREIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIG-Y-SVDT 94 (314)
T ss_dssp ECCCCCBCTTTCCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-S-SHHH
T ss_pred EeeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCC-c-CHHH
Confidence 5556676 4323234444557777777889876652 233456665322 1 22 34556653 3 5566
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe---c
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---L 213 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---~ 213 (349)
..++++.+++.|++++.+- .|.. .-| +++ ..+..+.+.+.+++||++=.. .
T Consensus 95 ai~la~~A~~~Gadavlv~--~P~y-----------~~~------------s~~~l~~~f~~va~a~~lPiilYn~tg~l 149 (314)
T 3d0c_A 95 AIELGKSAIDSGADCVMIH--QPVH-----------PYI------------TDAGAVEYYRNIIEALDAPSIIYFKDAHL 149 (314)
T ss_dssp HHHHHHHHHHTTCSEEEEC--CCCC-----------SCC------------CHHHHHHHHHHHHHHSSSCEEEEECCTTS
T ss_pred HHHHHHHHHHcCCCEEEEC--CCCC-----------CCC------------CHHHHHHHHHHHHHhCCCCEEEEeCCCCc
Confidence 7788999999999998763 2321 101 111 256677888888999988541 4
Q ss_pred CHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC--CCcEEEecCCCCHH-HHHHHHHhCCCEEEEch
Q 018919 214 TAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRRGT-DVFKALALGASGIFIGR 289 (349)
Q Consensus 214 ~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~--~ipvia~GGI~~~~-dv~kal~~GA~~V~ig~ 289 (349)
+++...++.+.. +-+|.-+. .++..+.++.+.+++ ++.| .+|- .. .++.++.+||+++.-+.
T Consensus 150 ~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~~~f~v-~~G~---d~~~~~~~l~~G~~G~is~~ 215 (314)
T 3d0c_A 150 SDDVIKELAPLDKLVGIKYAI----------NDIQRVTQVMRAVPKSSNVAF-ICGT---AEKWAPFFYHAGAVGFTSGL 215 (314)
T ss_dssp CTHHHHHHTTCTTEEEEEECC----------CCHHHHHHHHHHSCGGGCCEE-EETT---HHHHHHHHHHHTCCEEEESG
T ss_pred CHHHHHHHHcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCCCEEE-EEeC---cHHHHHHHHHcCCCEEEecH
Confidence 567766665431 22333221 134455566665544 4554 3442 23 46788999999999987
Q ss_pred H
Q 018919 290 P 290 (349)
Q Consensus 290 ~ 290 (349)
+
T Consensus 216 a 216 (314)
T 3d0c_A 216 V 216 (314)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.05 Score=52.01 Aligned_cols=118 Identities=12% Similarity=0.052 Sum_probs=83.5
Q ss_pred CCh---hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCc
Q 018919 133 KDR---NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLP 206 (349)
Q Consensus 133 ~~~---~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~p 206 (349)
.++ +.+.+.++++.+.|++++.+++..+ +.+. .+.++.+|+.+ +.+
T Consensus 135 ~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~----------------------------~~~~d~e~v~avR~a~G~d~~ 186 (382)
T 2gdq_A 135 DSPQWISRSVSNVEAQLKKGFEQIKVKIGGT----------------------------SFKEDVRHINALQHTAGSSIT 186 (382)
T ss_dssp SSTTHHHHHHHHHHHHHTTTCCEEEEECSSS----------------------------CHHHHHHHHHHHHHHHCTTSE
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEcCCCC----------------------------CHHHHHHHHHHHHHhhCCCCE
Confidence 456 7777788888889999999887531 1222 56789999887 578
Q ss_pred EEEEEe--cCHHHH----HHHHHc-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 018919 207 ILVKGV--LTAEDA----RIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279 (349)
Q Consensus 207 v~vK~v--~~~~~a----~~a~~~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~ 279 (349)
+.+..- -+.+++ +.+.+. |++.|- + ...+..++.+.++++.+ ++||++++.+.+..++.++++
T Consensus 187 l~vDan~~~~~~~a~~~~~~l~~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~ 256 (382)
T 2gdq_A 187 MILDANQSYDAAAAFKWERYFSEWTNIGWLE-------E-PLPFDQPQDYAMLRSRL--SVPVAGGENMKGPAQYVPLLS 256 (382)
T ss_dssp EEEECTTCCCHHHHHTTHHHHTTCSCEEEEE-------C-CSCSSCHHHHHHHHTTC--SSCEEECTTCCSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhccCCeEEE-------C-CCCcccHHHHHHHHhhC--CCCEEecCCcCCHHHHHHHHH
Confidence 887642 355554 444455 655542 0 01123567777777665 799999999999999999999
Q ss_pred hC-CCEEEEc
Q 018919 280 LG-ASGIFIG 288 (349)
Q Consensus 280 ~G-A~~V~ig 288 (349)
.| +|.|++-
T Consensus 257 ~~~~d~v~ik 266 (382)
T 2gdq_A 257 QRCLDIIQPD 266 (382)
T ss_dssp TTCCSEECCC
T ss_pred cCCCCEEecC
Confidence 76 8999884
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.13 Score=44.90 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=90.5
Q ss_pred HHHHHHHHcCCeEE--e-cCCCC--CCHHHH---HhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 92 ATARAASAAGTIMT--L-SSWST--SSVEEV---ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 92 ~la~aa~~~G~~~~--~-~~~~~--~~~e~i---~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
.=+++|.++|..++ + -..|+ .+++.. .+..| ....+-+|.+.+.+. ..+.+.+.+.+.+.+|-+-+
T Consensus 12 eda~~a~~~GaD~iGfif~~~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~---i~~~~~~~~ld~vQLHG~e~-- 86 (203)
T 1v5x_A 12 EDALLAEALGAFALGFVLAPGSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEE---VLRLMEEARLQVAQLHGEEP-- 86 (203)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHH---HHHHHHHTTCSEEEECSCCC--
T ss_pred HHHHHHHHcCCCEEEEEecCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHH---HHHHHHhhCCCEEEECCCCC--
Confidence 45667777775432 2 22222 344443 33333 455667777655554 44555678999999874321
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe--cCHHHHHHHHHcCCCEEEEecC-CCCCC
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNH-GARQL 239 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v--~~~~~a~~a~~~G~d~I~v~~~-gg~~~ 239 (349)
.+.++.++. ++|++ |-+ .+.++. .+.+..+|++.+... ||+..
T Consensus 87 ------------------------------~~~~~~l~~--~~~vi-ka~~v~~~~~l-~~~~~~~d~~LlD~~~gGtG~ 132 (203)
T 1v5x_A 87 ------------------------------PEWAEAVGR--FYPVI-KAFPLEGPARP-EWADYPAQALLLDGKRPGSGE 132 (203)
T ss_dssp ------------------------------HHHHHHHTT--TSCEE-EEEECSSSCCG-GGGGSSCSEEEEECSSTTSCC
T ss_pred ------------------------------HHHHHHhcc--CCCEE-EEEEcCChHhh-hhhhcCCCEEEEcCCCCCCCC
Confidence 134555522 57876 443 222333 344445899999864 44321
Q ss_pred CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 240 DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 240 ~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
.-.|+.+.++.. .+.|++..||+ +++.+.+++..++.+|=+.|-+
T Consensus 133 ---~fdW~~l~~~~~---~~~p~~LAGGL-~peNV~~ai~~~p~gVDvsSGv 177 (203)
T 1v5x_A 133 ---AYPRAWAKPLLA---TGRRVILAGGI-APENLEEVLALRPYALDLASGV 177 (203)
T ss_dssp ---CCCGGGGHHHHH---TTSCEEECSSC-CSTTHHHHHHHCCSEEEESGGG
T ss_pred ---ccCHHHHHhhhc---cCCcEEEECCC-CHHHHHHHHhcCCCEEEeCCce
Confidence 112333443211 25799999999 5689989887799999999855
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.12 Score=49.52 Aligned_cols=125 Identities=14% Similarity=-0.016 Sum_probs=89.2
Q ss_pred CChhHHHHHH-HHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEE
Q 018919 133 KDRNVVAQLV-RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPIL 208 (349)
Q Consensus 133 ~~~~~~~~~~-~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~ 208 (349)
.+++.+.+.+ +++.+.|++.+-+.++.+... . ..+++. .+.++.+|+.+ +.++.
T Consensus 138 ~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~------------~----------~~~~~~d~~~v~avR~a~g~~~~l~ 195 (393)
T 4dwd_A 138 RSVDEVVREVARRVEAEQPAAVKIRWDGDRTR------------C----------DVDIPGDIAKARAVRELLGPDAVIG 195 (393)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC------------C----------SCCHHHHHHHHHHHHHHHCTTCCEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEccCCCCcc------------c----------ccCHHHHHHHHHHHHHHhCCCCeEE
Confidence 4566777777 777888999999888653210 0 012233 56789999986 67898
Q ss_pred EEEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 209 VKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 209 vK~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
+..- -+.++ ++.+.+.|++.|-= ...+..++.+.++++.. .+||+++..+.+..|+.++++.|+
T Consensus 196 vDaN~~~~~~~A~~~~~~L~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~~ 265 (393)
T 4dwd_A 196 FDANNGYSVGGAIRVGRALEDLGYSWFEE--------PVQHYHVGAMGEVAQRL--DITVSAGEQTYTLQALKDLILSGV 265 (393)
T ss_dssp EECTTCCCHHHHHHHHHHHHHTTCSEEEC--------CSCTTCHHHHHHHHHHC--SSEEEBCTTCCSHHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCcccHHHHHHHHhhC--CCCEEecCCcCCHHHHHHHHHcCC
Confidence 8643 34554 45567788887731 11223577788888776 799999999999999999999889
Q ss_pred CEEEEch
Q 018919 283 SGIFIGR 289 (349)
Q Consensus 283 ~~V~ig~ 289 (349)
|.|++--
T Consensus 266 d~v~~k~ 272 (393)
T 4dwd_A 266 RMVQPDI 272 (393)
T ss_dssp CEECCCT
T ss_pred CEEEeCc
Confidence 9999854
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.64 Score=42.93 Aligned_cols=182 Identities=12% Similarity=0.097 Sum_probs=105.5
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~ 137 (349)
.|-++.|+.-.+-.+.+.-..+++-..+.|+.+++ + +....+.+|..+ ... .+.+...- ..+...
T Consensus 19 ~~alvTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ 97 (307)
T 3s5o_A 19 YPPVTTPFTATAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSG-CESTQA 97 (307)
T ss_dssp ECBCCCCBCTTSCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECC-CSSHHH
T ss_pred EEeeEccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecC-CCCHHH
Confidence 35666777433323444445666667778876554 2 334456665322 222 23445543 245666
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
..++++.+++.|++++.+.. |.. .-| + .+.+ ..+..+.+.+.+++||++=.+
T Consensus 98 ai~la~~A~~~Gadavlv~~--P~y-----------~~~-~---------~s~~~l~~~f~~ia~a~~lPiilYn~P~~t 154 (307)
T 3s5o_A 98 TVEMTVSMAQVGADAAMVVT--PCY-----------YRG-R---------MSSAALIHHYTKVADLSPIPVVLYSVPANT 154 (307)
T ss_dssp HHHHHHHHHHTTCSEEEEEC--CCT-----------TGG-G---------CCHHHHHHHHHHHHHHCSSCEEEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEEEcC--CCc-----------CCC-C---------CCHHHHHHHHHHHHhhcCCCEEEEeCCccc
Confidence 77899999999999987632 321 000 0 0111 256678888888999998775
Q ss_pred ---cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHh-cCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 213 ---LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT-QGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 213 ---~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+++...++.+.. +-+|.-+. ..+..+.++.+.. ++++.|+ +|. ...++.++++|++++.-
T Consensus 155 g~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~~f~v~-~G~---d~~~l~~l~~G~~G~is 220 (307)
T 3s5o_A 155 GLDLPVDAVVTLSQHPNIVGMXDSG----------GDVTRIGLIVHKTRKQDFQVL-AGS---AGFLMASYALGAVGGVC 220 (307)
T ss_dssp SCCCCHHHHHHHHTSTTEEEEEECS----------CCHHHHHHHHHHTTTSSCEEE-ESS---GGGHHHHHHHTCCEEEC
T ss_pred CCCCCHHHHHHHhcCCCEEEEEcCC----------CCHHHHHHHHHhccCCCeEEE-eCc---HHHHHHHHHcCCCEEEe
Confidence 4667777776532 22222211 1344555555544 2356654 442 23577899999999998
Q ss_pred chHH
Q 018919 288 GRPV 291 (349)
Q Consensus 288 g~~~ 291 (349)
+.+-
T Consensus 221 ~~an 224 (307)
T 3s5o_A 221 ALAN 224 (307)
T ss_dssp GGGG
T ss_pred chhh
Confidence 8753
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.11 Score=48.79 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=62.8
Q ss_pred CCceEEEEeec------CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HH
Q 018919 122 PGIRFFQLYVY------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DE 194 (349)
Q Consensus 122 ~~~~~~Ql~~~------~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~ 194 (349)
..+.++.|... .+.+...++++.++++|++.|.++..... +.. .. ..+.+ ++
T Consensus 209 ~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~--------------~~~--~~-----~~~~~~~~ 267 (340)
T 3gr7_A 209 DGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIV--------------PAR--MN-----VYPGYQVP 267 (340)
T ss_dssp CSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSS--------------CCC--CC-----CCTTTTHH
T ss_pred CCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcc--------------CCC--CC-----CCccccHH
Confidence 34566666432 23566788999999999999887643211 000 00 01233 78
Q ss_pred HHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcC-CCEEEE
Q 018919 195 DVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 195 ~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G-~d~I~v 231 (349)
.++++++.+++||++-+ +.++++|+.+++.| ||.|.+
T Consensus 268 ~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~i 306 (340)
T 3gr7_A 268 FAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFL 306 (340)
T ss_dssp HHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEe
Confidence 89999999999998765 46899999999999 999988
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.21 Score=47.05 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=84.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|+..+-+.+++. ++. .+.++.+|+.+ ++++.+
T Consensus 138 ~~~~~~~~~a~~~~~~G~~~~K~K~g~~-----------------------------~~~d~~~v~avR~a~g~~~~l~v 188 (354)
T 3jva_A 138 DEPNVMAQKAVEKVKLGFDTLKIKVGTG-----------------------------IEADIARVKAIREAVGFDIKLRL 188 (354)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCSC-----------------------------HHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEeCCC-----------------------------HHHHHHHHHHHHHHcCCCCeEEE
Confidence 4677777888888889999998887542 111 46788999887 577877
Q ss_pred EEe--cCHHHHHH----HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~a~~----a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
..- -+.++|.+ +.+.|++.|- + ...+..++.+.++++.. ++||++++.+.+..|+.++++.| +
T Consensus 189 Dan~~~~~~~a~~~~~~L~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~l~~~~~ 258 (354)
T 3jva_A 189 DANQAWTPKDAVKAIQALADYQIELVE-------Q-PVKRRDLEGLKYVTSQV--NTTIMADESCFDAQDALELVKKGTV 258 (354)
T ss_dssp ECTTCSCHHHHHHHHHHTTTSCEEEEE-------C-CSCTTCHHHHHHHHHHC--SSEEEESTTCCSHHHHHHHHHHTCC
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCCEEE-------C-CCChhhHHHHHHHHHhC--CCCEEEcCCcCCHHHHHHHHHcCCC
Confidence 642 35565533 3344544442 1 11223567778887776 79999999999999999999975 7
Q ss_pred CEEEEchHH
Q 018919 283 SGIFIGRPV 291 (349)
Q Consensus 283 ~~V~ig~~~ 291 (349)
|.|++--..
T Consensus 259 d~v~~k~~~ 267 (354)
T 3jva_A 259 DVINIKLMK 267 (354)
T ss_dssp SEEEECHHH
T ss_pred CEEEECchh
Confidence 999997544
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.037 Score=54.86 Aligned_cols=232 Identities=17% Similarity=0.192 Sum_probs=110.4
Q ss_pred hcccccccccccC-CCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHh
Q 018919 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (349)
Q Consensus 42 ~~~~~~l~p~~l~-~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~ 119 (349)
+||++.|+|.... ..+++|++|.+- ++.+..|++.|||...+ +..||.+.++.|..+++.. ..+.++.++
T Consensus 11 t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~M~tVT------e~~lA~ala~~GGiGvI~~--~~~~e~~a~ 82 (490)
T 4avf_A 11 TFDDVLLIPGYSEVLPKDVSLKTRLTRGIELNIPLVSAAMDTVT------EARLAIAMAQEGGIGIIHK--NMGIEQQAA 82 (490)
T ss_dssp CGGGEEECCCCBCSCGGGSCCCEEEETTEEESSSEEECSCTTTC------SHHHHHHHHHHTSEEEECC--SSCHHHHHH
T ss_pred CcceEEEeCCCCcccccceeeecccccCcccCCCccccchhhhC------HHHHHHHHHHcCCCccccC--CCCHHHHHH
Confidence 6999999998653 345799999986 68899999999997654 5689989888888888853 345554322
Q ss_pred h------CCCceEEEEeecCChh-HHHHHHHHHHHcCCCEEEEecCCCCCC-chhHHhhhh-----------------cC
Q 018919 120 T------GPGIRFFQLYVYKDRN-VVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNR-----------------FT 174 (349)
Q Consensus 120 ~------~~~~~~~Ql~~~~~~~-~~~~~~~~~~~~G~~~i~i~~d~p~~g-~r~~d~~~~-----------------~~ 174 (349)
. ......-.... -+++ ...+.++.+.+.+...+.|.=+.-..| ...+|++.. ..
T Consensus 83 ~v~~vk~~~~~m~~~~v~-v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~~~~~~~~V~~vMtp~~~~vt 161 (490)
T 4avf_A 83 EVRKVKKHETAIVRDPVT-VTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVKPNAGDTVAAIMTPKDKLVT 161 (490)
T ss_dssp HHHHHHHCCC----------------------------------------------------------------------
T ss_pred HhhhhcccccCcccCceE-eCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhhccccCCcHHHHhccCCCCEE
Confidence 1 11111011111 1222 233445555555555543210110001 011222210 00
Q ss_pred CCCcCcccccCC-----------CCCC--ch-----HHHHHHHHHh------cCCcEEEEE-e----cCHHHHHHHHHcC
Q 018919 175 LPPFLTLKNFQG-----------LDLG--KM-----DEDVKWLQTI------TKLPILVKG-V----LTAEDARIAVQAG 225 (349)
Q Consensus 175 ~p~~~~~~~~~~-----------~~~~--~~-----~~~i~~i~~~------~~~pv~vK~-v----~~~~~a~~a~~~G 225 (349)
++++........ ..|. .+ .+++.+..+. .+..+.+.. + ...+.++.+.++|
T Consensus 162 v~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~p~a~kd~~grl~v~aavG~~~~~~~~a~~l~~aG 241 (490)
T 4avf_A 162 AREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTYPLASKDEQGRLRVGAAVGTGADTGERVAALVAAG 241 (490)
T ss_dssp ---------------------------------------------CTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTT
T ss_pred ECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccCcchhhhccCcceeeeeeccccchHHHHHHHhhcc
Confidence 011000000000 0110 00 0111111100 011111111 1 2247789999999
Q ss_pred CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 226 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 226 ~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+|.|.+....+ ......+.+.++++..+ ++||++ |.+.+.+++.++..+|||+|.+|
T Consensus 242 ~d~I~id~a~g----~~~~~~~~v~~i~~~~p-~~~Vi~-g~v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 242 VDVVVVDTAHG----HSKGVIERVRWVKQTFP-DVQVIG-GNIATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp CSEEEEECSCC----SBHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred cceEEecccCC----cchhHHHHHHHHHHHCC-CceEEE-eeeCcHHHHHHHHHcCCCEEEEC
Confidence 99999864322 13445678888887763 678887 77999999999999999999985
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.2 Score=43.18 Aligned_cols=118 Identities=16% Similarity=0.083 Sum_probs=72.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHh-cCCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTI-TKLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~pv~vK~v 212 (349)
+.+...+.++.+. .|++.++++. |.. +..+ .+.++++|+. .+.||.+-..
T Consensus 11 ~~~~~~~~~~~~~-~~~diie~G~--p~~------~~~g--------------------~~~i~~ir~~~~~~~i~~~~~ 61 (211)
T 3f4w_A 11 TLPEAMVFMDKVV-DDVDIIEVGT--PFL------IREG--------------------VNAIKAIKEKYPHKEVLADAK 61 (211)
T ss_dssp CHHHHHHHHHHHG-GGCSEEEECH--HHH------HHHT--------------------THHHHHHHHHCTTSEEEEEEE
T ss_pred CHHHHHHHHHHhh-cCccEEEeCc--HHH------Hhcc--------------------HHHHHHHHHhCCCCEEEEEEE
Confidence 4555666666664 5888888754 210 0000 3678999988 4889865433
Q ss_pred --cCHHH-HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEe-cCCCCHHH-HHHHHHhCCCEEEE
Q 018919 213 --LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD-GGVRRGTD-VFKALALGASGIFI 287 (349)
Q Consensus 213 --~~~~~-a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~-GGI~~~~d-v~kal~~GA~~V~i 287 (349)
...+. ++.+.++|+|+|++.... ....+..+.+..+.. .++++.+ -+..++.+ +.++..+|+|.|.+
T Consensus 62 ~~~~~~~~~~~~~~~Gad~v~v~~~~------~~~~~~~~~~~~~~~--g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v 133 (211)
T 3f4w_A 62 IMDGGHFESQLLFDAGADYVTVLGVT------DVLTIQSCIRAAKEA--GKQVVVDMICVDDLPARVRLLEEAGADMLAV 133 (211)
T ss_dssp ECSCHHHHHHHHHHTTCSEEEEETTS------CHHHHHHHHHHHHHH--TCEEEEECTTCSSHHHHHHHHHHHTCCEEEE
T ss_pred eccchHHHHHHHHhcCCCEEEEeCCC------ChhHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHcCCCEEEE
Confidence 33454 899999999999994321 112223222222333 4666653 45666644 66677899999887
Q ss_pred c
Q 018919 288 G 288 (349)
Q Consensus 288 g 288 (349)
.
T Consensus 134 ~ 134 (211)
T 3f4w_A 134 H 134 (211)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.026 Score=54.40 Aligned_cols=67 Identities=27% Similarity=0.383 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+.++.++++|+|.|++..+.|. .....+.+.++++.+ ++||++ |++.+.+++.++..+|||+|.+|
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~----~~~~~e~I~~ik~~~--~i~Vi~-g~V~t~e~A~~a~~aGAD~I~vG 212 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGH----SLNIIRTLKEIKSKM--NIDVIV-GNVVTEEATKELIENGADGIKVG 212 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCS----BHHHHHHHHHHHTTC--CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----cccHHHHHHHHHhcC--CCeEEE-eecCCHHHHHHHHHcCCCEEEEe
Confidence 68899999999999988533221 122356666666554 688886 67999999999999999999996
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.081 Score=51.53 Aligned_cols=133 Identities=16% Similarity=0.148 Sum_probs=90.5
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|++++-+.+.+|... ..+. .|. ..+.+. .+.++.+|+.+ +++|.+
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~------~~G~-~~~---------~~~~~~d~e~v~avR~avG~d~~L~v 208 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTL------RGGH-MPA---------MTDISLSVEFCRKIRAAVGDKADLLF 208 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBT------TCCB-CCC---------HHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCccc------ccCC-Ccc---------hhhHHHHHHHHHHHHHHhCCCCeEEE
Confidence 4677777888888889999999888765210 0000 000 001122 56789999887 578877
Q ss_pred EEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
..- .+.++| +.+.+.|++.|-= ...+..++.+.++++.+ .+||++++.+.+..|+.++++.| +
T Consensus 209 Dan~~~t~~~A~~~~~~Le~~~i~~iEe--------P~~~~~~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~l~~g~~ 278 (433)
T 3rcy_A 209 GTHGQFTTAGAIRLGQAIEPYSPLWYEE--------PVPPDNVGAMAQVARAV--RIPVATGERLTTKAEFAPVLREGAA 278 (433)
T ss_dssp CCCSCBCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHHS--SSCEEECTTCCSHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHHHhhhcCCCEEEC--------CCChhhHHHHHHHHhcc--CCCEEecCCCCCHHHHHHHHHcCCC
Confidence 542 355554 5566788887731 11223577888888876 79999999999999999999986 8
Q ss_pred CEEEEchHH
Q 018919 283 SGIFIGRPV 291 (349)
Q Consensus 283 ~~V~ig~~~ 291 (349)
|.|++--..
T Consensus 279 D~v~~d~~~ 287 (433)
T 3rcy_A 279 AILQPALGR 287 (433)
T ss_dssp SEECCCHHH
T ss_pred CEEEeCchh
Confidence 999887543
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.044 Score=53.29 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=84.4
Q ss_pred CCh-hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEE
Q 018919 133 KDR-NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPIL 208 (349)
Q Consensus 133 ~~~-~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~ 208 (349)
.++ +.+.+.++++.+.|++++.+++.. +.+. .+.++.+|+.+ +++|.
T Consensus 183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~-----------------------------~~~~d~e~v~avR~avG~d~~l~ 233 (428)
T 3bjs_A 183 YQPKESLAEEAQEYIARGYKALKLRIGD-----------------------------AARVDIERVRHVRKVLGDEVDIL 233 (428)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCS-----------------------------CHHHHHHHHHHHHHHHCTTSEEE
T ss_pred CChHHHHHHHHHHHHHCCCCEEEECCCC-----------------------------CHHHHHHHHHHHHHhcCCCCEEE
Confidence 467 777788888889999999987653 1122 46788999886 57887
Q ss_pred EEEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCC-CcEEEecCCCCHHHHHHHHHhC
Q 018919 209 VKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 209 vK~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~-ipvia~GGI~~~~dv~kal~~G 281 (349)
+..- -+.++ ++.+.+.|++.|-= ...+..++.+.++++.+ + +||++++.+.+..++.++++.|
T Consensus 234 vDan~~~~~~eai~~~~~L~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~~iPIa~dE~~~~~~~~~~~i~~~ 303 (428)
T 3bjs_A 234 TDANTAYTMADARRVLPVLAEIQAGWLEE--------PFACNDFASYREVAKIT--PLVPIAAGENHYTRFEFGQMLDAG 303 (428)
T ss_dssp EECTTCCCHHHHHHHHHHHHHTTCSCEEC--------CSCTTCHHHHHHHTTTC--SSSCEEECTTCCSHHHHHHHHTTC
T ss_pred EECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCccCHHHHHHHHHhC--CCCcEEcCCCcCCHHHHHHHHHhC
Confidence 7642 34544 45567788887631 01223567777776655 6 9999999999999999999987
Q ss_pred -CCEEEEc
Q 018919 282 -ASGIFIG 288 (349)
Q Consensus 282 -A~~V~ig 288 (349)
+|.|++-
T Consensus 304 ~~d~v~ik 311 (428)
T 3bjs_A 304 AVQVWQPD 311 (428)
T ss_dssp CEEEECCB
T ss_pred CCCEEEeC
Confidence 7888874
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.077 Score=50.57 Aligned_cols=119 Identities=8% Similarity=0.031 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEEE
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVKG 211 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK~ 211 (349)
++.+.+.++++.+.|++++-++++++. .+++. .+.++.+|+.+ +.++.+..
T Consensus 147 ~e~~~~~a~~~~~~Gf~~iKlk~g~~g--------------------------~~~~~d~~~v~avR~a~g~~~~l~vDa 200 (374)
T 3sjn_A 147 PEDNVAIVQGLKDQGFSSIKFGGGVMG--------------------------DDPDTDYAIVKAVREAAGPEMEVQIDL 200 (374)
T ss_dssp GGGGHHHHHHHHTTTCSEEEEECTTTT--------------------------SCHHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEeccCCCC--------------------------CCHHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 377778888888899999999886531 02223 56789999986 67888864
Q ss_pred e--cC-HHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh-CCC
Q 018919 212 V--LT-AEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GAS 283 (349)
Q Consensus 212 v--~~-~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~-GA~ 283 (349)
- -+ .++| +.+.+.|++.|-= ...+..++.+.++++.. ++||++++-+.+..|+.++++. .+|
T Consensus 201 n~~~~d~~~A~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~l~~~~~d 270 (374)
T 3sjn_A 201 ASKWHTCGHSAMMAKRLEEFNLNWIEE--------PVLADSLISYEKLSRQV--SQKIAGGESLTTRYEFQEFITKSNAD 270 (374)
T ss_dssp TTTTCSHHHHHHHHHHSGGGCCSEEEC--------SSCTTCHHHHHHHHHHC--SSEEEECTTCCHHHHHHHHHHHHCCS
T ss_pred CCCCCCHHHHHHHHHHhhhcCceEEEC--------CCCcccHHHHHHHHhhC--CCCEEeCCCcCCHHHHHHHHHcCCCC
Confidence 3 35 6665 4445577777631 01123577788888776 7999999999999999999987 479
Q ss_pred EEEEch
Q 018919 284 GIFIGR 289 (349)
Q Consensus 284 ~V~ig~ 289 (349)
.|++--
T Consensus 271 ~v~~k~ 276 (374)
T 3sjn_A 271 IVQPDI 276 (374)
T ss_dssp EECCBT
T ss_pred EEEeCc
Confidence 998754
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.51 E-value=1.4 Score=40.24 Aligned_cols=179 Identities=17% Similarity=0.135 Sum_probs=106.8
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------hCC--CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+.-.+-.+.+.-..+++-.-+.|+.+++ ++ +...+.+|-.+ ... .+.+..... .+....
T Consensus 9 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~a 87 (294)
T 3b4u_A 9 AALTTPFKTDGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLV-DSIEDA 87 (294)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECC-SSHHHH
T ss_pred EEEECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-ccHHHH
Confidence 5556676433323444445777777788886654 33 23456665322 222 345666543 456667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCC-CCcCcccccCCCCCCc-hHHHHHHHHHhc---CCcEEEEEe-
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PPFLTLKNFQGLDLGK-MDEDVKWLQTIT---KLPILVKGV- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~-p~~~~~~~~~~~~~~~-~~~~i~~i~~~~---~~pv~vK~v- 212 (349)
.++++.+++.|++++.+. .|.. .- | +.+ ..+..+.+.+.+ ++||++=.+
T Consensus 88 i~la~~A~~~Gadavlv~--~P~y-----------~~~~------------s~~~l~~~f~~va~a~p~~~lPiilYn~P 142 (294)
T 3b4u_A 88 ADQSAEALNAGARNILLA--PPSY-----------FKNV------------SDDGLFAWFSAVFSKIGKDARDILVYNIP 142 (294)
T ss_dssp HHHHHHHHHTTCSEEEEC--CCCS-----------SCSC------------CHHHHHHHHHHHHHHHCTTCCCEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEc--CCcC-----------CCCC------------CHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence 889999999999998763 2321 10 0 111 256678888888 899998664
Q ss_pred ------cCHHHHHHHH-HcC--CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCC
Q 018919 213 ------LTAEDARIAV-QAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 283 (349)
Q Consensus 213 ------~~~~~a~~a~-~~G--~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~ 283 (349)
.+++...++. +.. +-+|.-+. .++..+.++.+..+ ++.|+ +| +...++.++.+|++
T Consensus 143 ~~tg~~l~~~~~~~La~~~pn~ivgiKds~----------gd~~~~~~~~~~~~-~f~v~-~G---~d~~~l~~l~~G~~ 207 (294)
T 3b4u_A 143 SVTMVTLSVELVGRLKAAFPGIVTGVKDSS----------GNWSHTERLLKEHG-DLAIL-IG---DERDLARGVRLGGQ 207 (294)
T ss_dssp HHHSCCCCHHHHHHHHHHCTTTEEEEEECC----------CCHHHHHHHHHHHT-TSEEE-EC---CHHHHHHHHHTTCC
T ss_pred chhCcCCCHHHHHHHHHhCCCcEEEEEECC----------CCHHHHHHHHHhCC-CeEEE-Ec---cHHHHHHHHHCCCC
Confidence 4667777776 542 33444321 12444555555554 55554 44 23556788899999
Q ss_pred EEEEchHHH
Q 018919 284 GIFIGRPVV 292 (349)
Q Consensus 284 ~V~ig~~~l 292 (349)
+++-+.+.+
T Consensus 208 G~is~~~n~ 216 (294)
T 3b4u_A 208 GAISGVANF 216 (294)
T ss_dssp EEEESGGGT
T ss_pred EEEeCHHHh
Confidence 999987543
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.05 Score=49.29 Aligned_cols=80 Identities=24% Similarity=0.446 Sum_probs=53.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH----------HHHHHHhCCCEE
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGI 285 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d----------v~kal~~GA~~V 285 (349)
+.|+.+.++|+|+++.+. +.+..+++.++. --++.+.||+-..+ ..+++..|||.+
T Consensus 148 ~~A~~a~~~G~dGvV~s~-------------~e~~~ir~~~~~-~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~i 213 (259)
T 3tfx_A 148 SLAKMAKHSGADGVICSP-------------LEVKKLHENIGD-DFLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAI 213 (259)
T ss_dssp HHHHHHHHTTCCEEECCG-------------GGHHHHHHHHCS-SSEEEECCCCCC-----------CHHHHHHTTCSEE
T ss_pred HHHHHHHHhCCCEEEECH-------------HHHHHHHhhcCC-ccEEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEE
Confidence 346777889999998742 123445555543 34678999986432 668889999999
Q ss_pred EEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 286 FIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 286 ~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
.+||+++.+ +.....++.++++++
T Consensus 214 VvGr~I~~a------~dp~~a~~~i~~~~~ 237 (259)
T 3tfx_A 214 VVGRPITLA------SDPKAAYEAIKKEFN 237 (259)
T ss_dssp EECHHHHTS------SSHHHHHHHHHHHHT
T ss_pred EEChHHhCC------CCHHHHHHHHHHHHH
Confidence 999998742 222345666666654
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.045 Score=50.43 Aligned_cols=92 Identities=22% Similarity=0.353 Sum_probs=59.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-....+.+..+++.+++++|||+.-|-.+-.++++ +-.+|||+|++-.|++
T Consensus 29 v~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 108 (292)
T 3daq_A 29 VNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYY 108 (292)
T ss_dssp HHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45577899999999765431110 111123455556666667899998777667777665 4448999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. -.++++.++++.+.+
T Consensus 109 ~~---~~~~~l~~~f~~ia~ 125 (292)
T 3daq_A 109 NK---TNQRGLVKHFEAIAD 125 (292)
T ss_dssp SC---CCHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHH
Confidence 63 235555555555443
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.047 Score=54.18 Aligned_cols=233 Identities=16% Similarity=0.184 Sum_probs=131.8
Q ss_pred hcccccccccccC-CCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH-
Q 018919 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (349)
Q Consensus 42 ~~~~~~l~p~~l~-~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~- 118 (349)
+||++.|+|.... ..+++|++|.+- ++.+..|++.|||...+ +..||.+.++.|..++++. +.+.++.+
T Consensus 12 t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~MdtVT------e~~ma~a~a~~GGiGvI~~--n~s~e~qa~ 83 (496)
T 4fxs_A 12 TFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVT------EARLAIALAQEGGIGFIHK--NMSIEQQAA 83 (496)
T ss_dssp CGGGEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHHTCEEEECS--SSCHHHHHH
T ss_pred CcccEEEecCccccccccccccceeccccccCCCceecCcchhh------HHHHHHHHHHcCCcceecC--CCCHHHHHH
Confidence 6999999998653 345799999986 68899999999997654 6688888888888888853 44554422
Q ss_pred ---hhC--CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCC-CCCC-chhHHhhhhc-----------------C
Q 018919 119 ---STG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-PRLG-RREADIKNRF-----------------T 174 (349)
Q Consensus 119 ---~~~--~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~-p~~g-~r~~d~~~~~-----------------~ 174 (349)
... .....-....-.......+.++.+.+.+...+.+.=+. -..| ...+|++... .
T Consensus 84 ~V~~Vk~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~~~~~~v~diM~p~~~~vt 163 (496)
T 4fxs_A 84 QVHQVKIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVTDLTKSVAAVMTPKERLAT 163 (496)
T ss_dssp HHHHHHHCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCCCTTSBGGGTSEEGGGCCE
T ss_pred HHHhccccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcccCCCcHHHHhcCCCCCEE
Confidence 111 11000011111112334566677777888887653211 0001 1224443110 0
Q ss_pred CCCcCcccccCC-----------CCCC--c----h-HHH-HHHHHH-----hcCCcEEEEE-e----cCHHHHHHHHHcC
Q 018919 175 LPPFLTLKNFQG-----------LDLG--K----M-DED-VKWLQT-----ITKLPILVKG-V----LTAEDARIAVQAG 225 (349)
Q Consensus 175 ~p~~~~~~~~~~-----------~~~~--~----~-~~~-i~~i~~-----~~~~pv~vK~-v----~~~~~a~~a~~~G 225 (349)
++++.+...... ..|. . . .++ ++.... ..+..+.+.. + ...+.++.+.++|
T Consensus 164 v~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~~p~a~~d~~grL~v~aavG~~~d~~~~a~~l~~aG 243 (496)
T 4fxs_A 164 VKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPGNEERVKALVEAG 243 (496)
T ss_dssp EECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CCCTTCCBCTTSCBCCEEECCSSSCCHHHHHHHHHTT
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhcccchhhhcccceeeeeeeccccchHHHHHHHHhcc
Confidence 001000000000 0000 0 0 111 111110 0111222222 1 2468899999999
Q ss_pred CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 226 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 226 ~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+|.|.+...-+ .....++.+.++++..+ ++||++ |.+.+.+++.++..+|||+|.+|
T Consensus 244 ~d~I~id~a~g----~~~~~~~~i~~ir~~~p-~~~Vi~-g~v~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 244 VDVLLIDSSHG----HSEGVLQRIRETRAAYP-HLEIIG-GNVATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp CSEEEEECSCT----TSHHHHHHHHHHHHHCT-TCCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred CceEEeccccc----cchHHHHHHHHHHHHCC-CceEEE-cccCcHHHHHHHHHhCCCEEEEC
Confidence 99999964322 12345678888887763 688887 77999999999999999999986
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.13 Score=48.22 Aligned_cols=89 Identities=12% Similarity=0.071 Sum_probs=61.9
Q ss_pred CCceEEEEeec------CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HH
Q 018919 122 PGIRFFQLYVY------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DE 194 (349)
Q Consensus 122 ~~~~~~Ql~~~------~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~ 194 (349)
..+.++.+... .+.+...++++.+++.|++.|.++-..... . ..| ..+.. ++
T Consensus 209 ~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~--------~--~~~-----------~~~~~~~~ 267 (338)
T 1z41_A 209 DGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVH--------A--DIN-----------VFPGYQVS 267 (338)
T ss_dssp CSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSC--------C--CCC-----------CCTTTTHH
T ss_pred CCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc--------C--CCC-----------CCccchHH
Confidence 34456665431 245567788999999999999876432100 0 001 01223 78
Q ss_pred HHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcC-CCEEEE
Q 018919 195 DVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 195 ~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G-~d~I~v 231 (349)
.++++++.+++||++-+ +.+++++..+++.| ||.|.+
T Consensus 268 ~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~i 306 (338)
T 1z41_A 268 FAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFI 306 (338)
T ss_dssp HHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEee
Confidence 89999999999998765 45899999999999 999988
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.077 Score=49.19 Aligned_cols=92 Identities=14% Similarity=0.230 Sum_probs=58.4
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-...-. ....+.+..+++.+++++|||+.=|=.+-.++++ |-.+|||++++-.|++
T Consensus 43 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 122 (304)
T 3cpr_A 43 AAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYY 122 (304)
T ss_dssp HHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 4557789999999976544211111 1123455566666667899987666656666654 3348999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. -.++++.++++.+.+
T Consensus 123 ~~---~~~~~l~~~f~~ia~ 139 (304)
T 3cpr_A 123 SK---PSQEGLLAHFGAIAA 139 (304)
T ss_dssp SC---CCHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHH
Confidence 53 235565555554443
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.33 Score=45.79 Aligned_cols=137 Identities=9% Similarity=0.047 Sum_probs=86.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHh--hh--hcCCCCc-Ccc---cccCCCCCCchHHHHHHHHHhcC
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI--KN--RFTLPPF-LTL---KNFQGLDLGKMDEDVKWLQTITK 204 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~--~~--~~~~p~~-~~~---~~~~~~~~~~~~~~i~~i~~~~~ 204 (349)
.+.+...++++.+.++|++++-...=.| +.+ .+ .|+.+.. -.. ....+ ...+.++.+++.++..+
T Consensus 32 gs~e~a~~li~~ak~aGadavKfq~~k~------~tl~s~~~~~fq~~~~~~~~y~~~~~~~-l~~e~~~~L~~~~~~~G 104 (349)
T 2wqp_A 32 GSLKTAFEMVDAAYNAGAEVVKHQTHIV------EDEMSDEAKQVIPGNADVSIYEIMERCA-LNEEDEIKLKEYVESKG 104 (349)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEEECCH------HHHCCGGGGGCCCTTCSSCHHHHHHHHC-CCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCEEeeeeccc------ccccCcchhccccCCCCccHHHHHHHhC-CCHHHHHHHHHHHHHhC
Confidence 4677888899999999999986543221 111 00 1221100 000 00000 01111456777788889
Q ss_pred CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH----h
Q 018919 205 LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA----L 280 (349)
Q Consensus 205 ~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~----~ 280 (349)
++++. .+.+.+.+..+.+.|+|.+.|... ....+..|.++.+. +.|||.+-|..|-+++..|.. .
T Consensus 105 i~~~s-t~~d~~svd~l~~~~v~~~KI~S~-------~~~n~~LL~~va~~---gkPviLstGmat~~Ei~~Ave~i~~~ 173 (349)
T 2wqp_A 105 MIFIS-TLFSRAAALRLQRMDIPAYKIGSG-------ECNNYPLIKLVASF---GKPIILSTGMNSIESIKKSVEIIREA 173 (349)
T ss_dssp CEEEE-EECSHHHHHHHHHHTCSCEEECGG-------GTTCHHHHHHHHTT---CSCEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CeEEE-eeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHc
Confidence 99875 578899999999999999999532 12245667666542 789999999999999877664 4
Q ss_pred CCCEEEE
Q 018919 281 GASGIFI 287 (349)
Q Consensus 281 GA~~V~i 287 (349)
|.+.+.+
T Consensus 174 G~~iiLl 180 (349)
T 2wqp_A 174 GVPYALL 180 (349)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 7665554
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.044 Score=48.16 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH---H------HHHHHHhCCCEEEE
Q 018919 217 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT---D------VFKALALGASGIFI 287 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~---d------v~kal~~GA~~V~i 287 (349)
.++. .+.|+| ++.+ + +.+.++++.++ .+ +.++||+-.. | ..+ ++.|||.+.+
T Consensus 131 ~a~~-~e~G~d-vV~~----------~---~~~~~ir~~~~--~~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVv 191 (213)
T 1vqt_A 131 IEKL-NKLGCD-FVLP----------G---PWAKALREKIK--GK-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVL 191 (213)
T ss_dssp HHHH-HHHTCE-EECC----------H---HHHHHHTTTCC--SC-EEECCBC---------CCBCHHH-HTTTCSEEEE
T ss_pred HHHH-hcCCCE-EEEc----------H---HHHHHHHHHCC--CC-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEE
Confidence 4666 889999 5432 1 34455555443 35 8889997543 2 567 8899999999
Q ss_pred chHHHH
Q 018919 288 GRPVVY 293 (349)
Q Consensus 288 g~~~l~ 293 (349)
||+++.
T Consensus 192 GR~I~~ 197 (213)
T 1vqt_A 192 GREIYL 197 (213)
T ss_dssp SHHHHT
T ss_pred ChhhcC
Confidence 999985
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.054 Score=49.90 Aligned_cols=92 Identities=15% Similarity=0.323 Sum_probs=58.7
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-....+.+..+++.+++++|||+.-|=.+-.++++ +-.+|||+|++-.|++
T Consensus 28 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 107 (291)
T 3tak_A 28 VEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYY 107 (291)
T ss_dssp HHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 34567899999998665442110 111123455556666667899998766666677664 4458999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. -.++++.++++.+.+
T Consensus 108 ~~---~~~~~l~~~f~~ia~ 124 (291)
T 3tak_A 108 NK---PTQEGLYQHYKAIAE 124 (291)
T ss_dssp SC---CCHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHH
Confidence 63 235555555554443
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=95.37 E-value=1.7 Score=40.12 Aligned_cols=181 Identities=17% Similarity=0.118 Sum_probs=103.5
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+++-.-+.|+.+++ + +....+.+|-.+ . .. -+.+...-. .+-..
T Consensus 13 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ 91 (309)
T 3fkr_A 13 FPVVPTTFADTGDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSH-YSTQV 91 (309)
T ss_dssp CCBCCCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHH
T ss_pred EEeeeCCCCcCCCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-chHHH
Confidence 46667777533333444455677777788876543 2 334456665322 1 22 345666533 45667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.++++.+++.|++++.+. .|..... .-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 92 ai~la~~A~~~Gadavlv~--~Pyy~~~--------~~~------------s~~~l~~~f~~va~a~~lPiilYn~P~tg 149 (309)
T 3fkr_A 92 CAARSLRAQQLGAAMVMAM--PPYHGAT--------FRV------------PEAQIFEFYARVSDAIAIPIMVQDAPASG 149 (309)
T ss_dssp HHHHHHHHHHTTCSEEEEC--CSCBTTT--------BCC------------CHHHHHHHHHHHHHHCSSCEEEEECGGGC
T ss_pred HHHHHHHHHHcCCCEEEEc--CCCCccC--------CCC------------CHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 7889999999999998763 2321000 001 111 256678888888999998765
Q ss_pred --cCHHHHHHHHH-c-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH---HHHHHHhCCCEE
Q 018919 213 --LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD---VFKALALGASGI 285 (349)
Q Consensus 213 --~~~~~a~~a~~-~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d---v~kal~~GA~~V 285 (349)
.+++...++.+ . .+-+|.... ...+..+.++.+..++.+..+.+| .| ++.++++||+++
T Consensus 150 ~~l~~~~~~~La~~~pnIvgiK~~~---------~~~~~~~~~~~~~~~~~~~~~~~G-----~d~~~l~~~l~~G~~G~ 215 (309)
T 3fkr_A 150 TALSAPFLARMAREIEQVAYFXIET---------PGAANKLRELIRLGGDAIEGPWDG-----EEAITLLADLHAGATGA 215 (309)
T ss_dssp CCCCHHHHHHHHHHSTTEEEEEECS---------SSHHHHHHHHHHHHGGGCCEEEEC-----GGGTTHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHhhCCCEEEEECCC---------cchHHHHHHHHHhcCCceeeecCC-----chHHHHHHHHHCCCcEE
Confidence 45777777764 2 344443211 113444555555543333223343 34 457899999998
Q ss_pred EEch
Q 018919 286 FIGR 289 (349)
Q Consensus 286 ~ig~ 289 (349)
+.|.
T Consensus 216 i~~n 219 (309)
T 3fkr_A 216 MTGG 219 (309)
T ss_dssp CCCS
T ss_pred EEhh
Confidence 7654
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.18 Score=47.55 Aligned_cols=120 Identities=17% Similarity=0.106 Sum_probs=86.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|++.+-+.+++. ++. .+.++.+|+.+ ++++.+
T Consensus 139 ~~~~~~~~~a~~~~~~G~~~~K~K~G~~-----------------------------~~~d~~~v~avR~~~g~~~~l~v 189 (356)
T 3ro6_B 139 KPVEETLAEAREHLALGFRVLKVKLCGD-----------------------------EEQDFERLRRLHETLAGRAVVRV 189 (356)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCSC-----------------------------HHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeCCC-----------------------------HHHHHHHHHHHHHHhCCCCEEEE
Confidence 4677777888888889999998877531 112 46788999887 578887
Q ss_pred EEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC--
Q 018919 210 KGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-- 281 (349)
Q Consensus 210 K~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-- 281 (349)
..- -+.++ ++.+.+.|++.|- | ...+..++.+.++++.. ++||+++.-+.+..|+.+++..|
T Consensus 190 Dan~~~~~~~a~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~~~~~~~ 259 (356)
T 3ro6_B 190 DPNQSYDRDGLLRLDRLVQELGIEFIE-------Q-PFPAGRTDWLRALPKAI--RRRIAADESLLGPADAFALAAPPAA 259 (356)
T ss_dssp ECTTCCCHHHHHHHHHHHHHTTCCCEE-------C-CSCTTCHHHHHTSCHHH--HHTEEESTTCCSHHHHHHHHSSSCS
T ss_pred eCCCCCCHHHHHHHHHHHHhcCCCEEE-------C-CCCCCcHHHHHHHHhcC--CCCEEeCCcCCCHHHHHHHHhcCCc
Confidence 642 24444 4556778888773 1 11123566677766665 69999999999999999999875
Q ss_pred CCEEEEchHH
Q 018919 282 ASGIFIGRPV 291 (349)
Q Consensus 282 A~~V~ig~~~ 291 (349)
+|.|++--..
T Consensus 260 ~d~v~~k~~~ 269 (356)
T 3ro6_B 260 CGIFNIKLMK 269 (356)
T ss_dssp CSEEEECHHH
T ss_pred CCEEEEcccc
Confidence 8999997644
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.07 Score=49.28 Aligned_cols=92 Identities=18% Similarity=0.286 Sum_probs=58.1
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-...-. ....+.+..+++.+++++|||+.-|=.+-.++++ +-.+|||+|++-.|++
T Consensus 34 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 113 (297)
T 3flu_A 34 IDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYY 113 (297)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 3456789999999976544211111 1123455566666667899998766556666654 3348999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. -.++++.++++.+.+
T Consensus 114 ~~---~~~~~l~~~f~~va~ 130 (297)
T 3flu_A 114 NK---PSQEGIYQHFKTIAE 130 (297)
T ss_dssp SC---CCHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHH
Confidence 63 234555555444433
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.18 Score=47.79 Aligned_cols=121 Identities=16% Similarity=0.164 Sum_probs=85.6
Q ss_pred CChhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-h-HHHHHHHHHhc--CCcE
Q 018919 133 KDRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-M-DEDVKWLQTIT--KLPI 207 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~-~~~i~~i~~~~--~~pv 207 (349)
.+++.+.+.++++.+. |+..+-+.++.. +. . .+.++.+|+.+ +.++
T Consensus 138 ~~~~~~~~~a~~~~~~~G~~~~K~K~g~~-----------------------------~~~~d~~~v~avR~a~g~~~~l 188 (367)
T 3dg3_A 138 DDPVKMVAEAERIRETYGINTFKVKVGRR-----------------------------PVQLDTAVVRALRERFGDAIEL 188 (367)
T ss_dssp SCHHHHHHHHHHHHHHHCCCEEEEECCCS-----------------------------STHHHHHHHHHHHHHHGGGSEE
T ss_pred CCHHHHHHHHHHHHHhcCccEEEEeeCCC-----------------------------hhhhHHHHHHHHHHHhCCCCEE
Confidence 4677777778887777 999998877531 11 2 56788898886 5778
Q ss_pred EEEEe--cCHHHHH----HHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC
Q 018919 208 LVKGV--LTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 208 ~vK~v--~~~~~a~----~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G 281 (349)
.+..- -+.++|. .+.+.|++.|- + ...+..++.+.++++.. ++||++++.+.+..|+.+++..|
T Consensus 189 ~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~ 258 (367)
T 3dg3_A 189 YVDGNRGWSAAESLRAMREMADLDLLFAE-------E-LCPADDVLSRRRLVGQL--DMPFIADESVPTPADVTREVLGG 258 (367)
T ss_dssp EEECTTCSCHHHHHHHHHHTTTSCCSCEE-------S-CSCTTSHHHHHHHHHHC--SSCEEECTTCSSHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCEEE-------C-CCCcccHHHHHHHHHhC--CCCEEecCCcCCHHHHHHHHHcC
Confidence 77532 3455553 44456766653 1 01123567777887776 79999999999999999999987
Q ss_pred -CCEEEEchHHH
Q 018919 282 -ASGIFIGRPVV 292 (349)
Q Consensus 282 -A~~V~ig~~~l 292 (349)
+|.|++--..+
T Consensus 259 ~~d~v~~k~~~~ 270 (367)
T 3dg3_A 259 SATAISIKTART 270 (367)
T ss_dssp SCSEEEECHHHH
T ss_pred CCCEEEeehhhh
Confidence 79999965544
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.44 Score=44.94 Aligned_cols=241 Identities=15% Similarity=0.145 Sum_probs=124.7
Q ss_pred eeEcCeec---CcceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCCCCCCHHHHH-h-h--CC--Cc--eEEEEe
Q 018919 63 TTVLGFKI---SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTSSVEEVA-S-T--GP--GI--RFFQLY 130 (349)
Q Consensus 63 ~~l~g~~~---~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~~~~~~e~i~-~-~--~~--~~--~~~Ql~ 130 (349)
+++.|.++ ..|++||.++.....+.+--..++++|+++|+-.+ +.++ ..+.+. . . .. +. ..+.+|
T Consensus 7 i~i~~~~iG~~~~~~iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~---k~~tl~s~~~~~fq~~~~~~~~y~~~ 83 (349)
T 2wqp_A 7 FKIGNRSVGYNHEPLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTH---IVEDEMSDEAKQVIPGNADVSIYEIM 83 (349)
T ss_dssp EEETTEEEETTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEEC---CHHHHCCGGGGGCCCTTCSSCHHHHH
T ss_pred EEECCEEECCCCceEEEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeec---ccccccCcchhccccCCCCccHHHHH
Confidence 34445444 24899998875332233344589999999999866 3333 233321 1 1 11 00 000111
Q ss_pred e--cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccccCCCCCCchHHHHHHHHHhcCCcE
Q 018919 131 V--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEDVKWLQTITKLPI 207 (349)
Q Consensus 131 ~--~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv 207 (349)
. .-..+....+.+.+++.|...+.=-+| .+.-|+-..+.+|- ++..++. . .+..|+++.+ ++.||
T Consensus 84 ~~~~l~~e~~~~L~~~~~~~Gi~~~st~~d-----~~svd~l~~~~v~~~KI~S~~~---~---n~~LL~~va~-~gkPv 151 (349)
T 2wqp_A 84 ERCALNEEDEIKLKEYVESKGMIFISTLFS-----RAAALRLQRMDIPAYKIGSGEC---N---NYPLIKLVAS-FGKPI 151 (349)
T ss_dssp HHHCCCHHHHHHHHHHHHHTTCEEEEEECS-----HHHHHHHHHHTCSCEEECGGGT---T---CHHHHHHHHT-TCSCE
T ss_pred HHhCCCHHHHHHHHHHHHHhCCeEEEeeCC-----HHHHHHHHhcCCCEEEECcccc---c---CHHHHHHHHh-cCCeE
Confidence 1 123455666777777888877642222 12222222332221 1111221 1 1567887765 69999
Q ss_pred EEEEe-cCHHHHHH----HHHcCCCEEEEecCCCCCCCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh
Q 018919 208 LVKGV-LTAEDARI----AVQAGAAGIIVSNHGARQLDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 208 ~vK~v-~~~~~a~~----a~~~G~d~I~v~~~gg~~~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~ 280 (349)
++|.- .+.++... +.+.|.+.+.+ |+-+.... ..-.+..++.+++..+ ++||..++==.-..=.+.|+++
T Consensus 152 iLstGmat~~Ei~~Ave~i~~~G~~iiLl--hc~s~Yp~~~~~~nL~ai~~lk~~f~-~lpVg~sdHt~G~~~~~AAvAl 228 (349)
T 2wqp_A 152 ILSTGMNSIESIKKSVEIIREAGVPYALL--HCTNIYPTPYEDVRLGGMNDLSEAFP-DAIIGLSDHTLDNYACLGAVAL 228 (349)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHTCCEEEE--ECCCCSSCCGGGCCTHHHHHHHHHCT-TSEEEEECCSSSSHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCEEEE--eccCCCCCChhhcCHHHHHHHHHHCC-CCCEEeCCCCCcHHHHHHHHHh
Confidence 99975 46665433 44578876666 33222111 1124567777766642 4888654422223444568889
Q ss_pred CCCEEEEchHHHHHHhhcCHHHH----HHHHHHHHHHHHHHHHHcCC
Q 018919 281 GASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGC 323 (349)
Q Consensus 281 GA~~V~ig~~~l~~~~~~G~~gv----~~~l~~l~~el~~~m~~~G~ 323 (349)
||+ +|=+-|--.-+..|.++- -+-+..+.++++..-..+|.
T Consensus 229 GA~--iIEkH~tld~a~~G~D~~~SL~p~ef~~lv~~ir~~~~alG~ 273 (349)
T 2wqp_A 229 GGS--ILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARGG 273 (349)
T ss_dssp TCC--EEEEEBCSCTTCCSTTGGGCBCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCC--EEEeCCCccccCCCCChhhhCCHHHHHHHHHHHHHHHHHhCC
Confidence 999 455433211111232210 12356777777777777885
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.3 Score=43.29 Aligned_cols=111 Identities=17% Similarity=0.248 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec------
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL------ 213 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~------ 213 (349)
+.++.+++.+.+.+.+|-+-+ .+.++++++.+++|++ |-+.
T Consensus 83 ei~~~i~~~~ld~vQLHG~E~--------------------------------~~~~~~l~~~~~~~vi-Ka~~v~~~~~ 129 (228)
T 4aaj_A 83 EWAMAIERTGAQYIQVHSNAL--------------------------------PQTIDTLKKEFGVFVM-KAFRVPTISK 129 (228)
T ss_dssp HHHHHHHHHTCSEEEECSCCC--------------------------------HHHHHHHHHHHCCEEE-EEEECCSSCS
T ss_pred HHHHHHHhccchheecccccC--------------------------------HHHHHHHhhccCceEE-EEEEeccccc
Confidence 345566778999998875421 2568888888888876 5431
Q ss_pred CH-HHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCCEEEE
Q 018919 214 TA-EDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFI 287 (349)
Q Consensus 214 ~~-~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~~V~i 287 (349)
.+ +++ ..+....+|++.+...||+.. .-.|+.+..+.. +.|++..||+ +++.|.+|+. .+..+|=+
T Consensus 130 ~~~~~~~~~~~~~~~~~~d~~LlDs~GGtG~---~fDW~~~~~~~~----~~p~iLAGGL-~peNV~~Ai~~~~P~gVDV 201 (228)
T 4aaj_A 130 NPEEDANRLLSEISRYNADMVLLDTGAGSGK---LHDLRVSSLVAR----KIPVIVAGGL-NAENVEEVIKVVKPYGVDV 201 (228)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEEC----------CCCHHHHHHHH----HSCEEEESSC-CTTTHHHHHHHHCCSEEEE
T ss_pred chhhhHHHHHHHHhccCCCEEccCCCCCCcC---cCChHHHHHhhh----cCCeEEECCC-CHHHHHHHHHHhCCCEEEe
Confidence 11 332 334556899999987776421 113444544433 4799999999 5699999998 79999999
Q ss_pred chHH
Q 018919 288 GRPV 291 (349)
Q Consensus 288 g~~~ 291 (349)
.+-+
T Consensus 202 sSGV 205 (228)
T 4aaj_A 202 SSGV 205 (228)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 8854
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.65 Score=43.77 Aligned_cols=270 Identities=18% Similarity=0.184 Sum_probs=135.6
Q ss_pred ccccCCCcchHHH-HHHHhhccccccccccc-------CCCCCCCcceeEcCeec--CcceeecccccccccCChhhHHH
Q 018919 24 DYYASGAEDQWTL-QENRNAFSRILFRPRIL-------IDVSKIDMNTTVLGFKI--SMPIMIAPTAMQKMAHPEGEYAT 93 (349)
Q Consensus 24 ~y~~~g~~~~~t~-~~n~~~~~~~~l~p~~l-------~~~~~~d~s~~l~g~~~--~~Pi~iApm~~~~l~~~~~~~~l 93 (349)
..+.|--||+..+ ....+++.-+.=+-++. +....-++.+++.+..+ ..|++||-.+. ..+.+.-..+
T Consensus 48 ~~~ig~~g~~~~~~~~~~~~~~~v~~~~~i~~~~k~~sr~~~~~~~~i~i~~~~iG~~~~~vIAgpcs--~es~e~a~~~ 125 (350)
T 1vr6_A 48 RTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCS--VEGREMLMET 125 (350)
T ss_dssp CEEEEEEEEESSCCHHHHHTSTTEEEEEECSCSCCTTBTTTCCSCCCEECSSCEESTTEEEEEEECSB--CCCHHHHHHH
T ss_pred eEEEEEECCcCcCCHHHhhCCccceeeccCCCChhhhhhhcCCcCCEEEECCEEECCCCeEEEEeCCC--cCCHHHHHHH
Confidence 4445555665554 23344444333222222 22334456666655444 24777776543 2244444579
Q ss_pred HHHHHHcCCeEEe-cCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhh
Q 018919 94 ARAASAAGTIMTL-SSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR 172 (349)
Q Consensus 94 a~aa~~~G~~~~~-~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~ 172 (349)
+++++++|.-++- ..+.+.+ .| ..||-. ..+....+.+.+++.|...+.==.|. ..-++-..
T Consensus 126 a~~~k~aGa~~vr~q~fKprT-------s~--~~f~gl---g~egl~~l~~~~~e~Gl~~~te~~d~-----~~~~~l~~ 188 (350)
T 1vr6_A 126 AHFLSELGVKVLRGGAYKPRT-------SP--YSFQGL---GEKGLEYLREAADKYGMYVVTEALGE-----DDLPKVAE 188 (350)
T ss_dssp HHHHHHTTCCEEECBSCCCCC-------ST--TSCCCC---THHHHHHHHHHHHHHTCEEEEECSSG-----GGHHHHHH
T ss_pred HHHHHHcCCCeeeeeEEeCCC-------Ch--HhhcCC---CHHHHHHHHHHHHHcCCcEEEEeCCH-----HHHHHHHH
Confidence 9999999988753 2222211 11 112211 23344444455566787765311221 11111111
Q ss_pred cCCCC-cCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec--CHHHHHH----HHHcCCCEEEEecCCCCCCC---Cc
Q 018919 173 FTLPP-FLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL--TAEDARI----AVQAGAAGIIVSNHGARQLD---YV 242 (349)
Q Consensus 173 ~~~p~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~--~~~~a~~----a~~~G~d~I~v~~~gg~~~~---~~ 242 (349)
+ ++- .+..++ +.+ ...++++. .++.||++|.-. +.++... +...|.+-+++--+|.+... ..
T Consensus 189 ~-vd~lkIgAr~---~~n---~~LL~~va-~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~~~~ 260 (350)
T 1vr6_A 189 Y-ADIIQIGARN---AQN---FRLLSKAG-SYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRN 260 (350)
T ss_dssp H-CSEEEECGGG---TTC---HHHHHHHH-TTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSS
T ss_pred h-CCEEEECccc---ccC---HHHHHHHH-ccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcChh
Confidence 1 110 011111 111 45577776 479999999864 5666443 45578877777545654321 11
Q ss_pred hhhHHHHHHHHHHhcCCCcEEEec----CCCC--HHHHHHHHHhCCCEEEEchHHHHHHh-hcCHHHH-HHHHHHHHHHH
Q 018919 243 PATIMALEEVVKATQGRIPVFLDG----GVRR--GTDVFKALALGASGIFIGRPVVYSLA-AEGEKGV-RRVLEMLREEF 314 (349)
Q Consensus 243 ~~~~~~l~~i~~~~~~~ipvia~G----GI~~--~~dv~kal~~GA~~V~ig~~~l~~~~-~~G~~gv-~~~l~~l~~el 314 (349)
...+..++.+++.. .+||+++. |-+. ..=...++++||++++|-+-+--.-+ +.|...+ -+-++.+.+++
T Consensus 261 ~vdl~ai~~lk~~~--~lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~~pd~al~D~~~sL~p~e~~~lv~~i 338 (350)
T 1vr6_A 261 TLDISAVPIIRKES--HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEM 338 (350)
T ss_dssp BCCTTHHHHHHHHB--SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCSSCGGGCBCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhh--CCCEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccCCCchhhcCCHHHHHHHHHHH
Confidence 22455666666655 68998744 3322 23355678899999999985532111 1222110 12245566666
Q ss_pred HHHHHHcC
Q 018919 315 ELAMALSG 322 (349)
Q Consensus 315 ~~~m~~~G 322 (349)
+..-..+|
T Consensus 339 r~i~~alg 346 (350)
T 1vr6_A 339 KKLADALG 346 (350)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 66555555
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.069 Score=49.44 Aligned_cols=90 Identities=14% Similarity=0.307 Sum_probs=56.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-...-. ....+.+..+++.+++++|||+.=|=.+-.++++ |-++|||+|++-.|++
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 118 (301)
T 1xky_A 39 VNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY 118 (301)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 4556789999999966544211001 1123455556666667899987666556566654 3348999999999987
Q ss_pred HHHhhcCHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEML 310 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l 310 (349)
+. -.++++.++++.+
T Consensus 119 ~~---~s~~~l~~~f~~v 133 (301)
T 1xky_A 119 NK---PSQEGMYQHFKAI 133 (301)
T ss_dssp SC---CCHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHH
Confidence 53 2345555444443
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.07 Score=49.17 Aligned_cols=92 Identities=11% Similarity=0.133 Sum_probs=58.5
Q ss_pred HHHHHH-cCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHH
Q 018919 218 ARIAVQ-AGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 291 (349)
Q Consensus 218 a~~a~~-~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~ 291 (349)
++.+++ .|+|+|++.++.|-...-. ....+.+..+++.+++++|||+.-|=.+-.++++ +-.+|||+|++-.|+
T Consensus 30 v~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 109 (293)
T 1f6k_A 30 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 109 (293)
T ss_dssp HHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 445678 9999999966543211111 1123455666666667899987766666666654 334799999999998
Q ss_pred HHHHhhcCHHHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l~~ 312 (349)
++. ..++++.++++.+.+
T Consensus 110 y~~---~~~~~l~~~f~~va~ 127 (293)
T 1f6k_A 110 YYK---FSFPEIKHYYDTIIA 127 (293)
T ss_dssp SSC---CCHHHHHHHHHHHHH
T ss_pred CCC---CCHHHHHHHHHHHHH
Confidence 763 235565555555444
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.18 Score=47.72 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK 210 (349)
+++.+.+.++++.+.|++++.++++ | +. .+.++.+|+.+ ++++.+.
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~vKik~~-~------------------------------~~~~e~v~avr~~~g~~~~l~vD 189 (368)
T 1sjd_A 141 TIPQLLDVVGGYLDEGYVRIKLKIE-P------------------------------GWDVEPVRAVRERFGDDVLLQVD 189 (368)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECB-T------------------------------TBSHHHHHHHHHHHCTTSEEEEE
T ss_pred CHHHHHHHHHHHHHhCccEEEEecC-c------------------------------hhHHHHHHHHHHhcCCCceEEEe
Confidence 6677777888888899999998763 1 11 47788888887 4677664
Q ss_pred Ee--cC---HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCE
Q 018919 211 GV--LT---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASG 284 (349)
Q Consensus 211 ~v--~~---~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~ 284 (349)
.- -+ .+.++.+.+.|++.|- + ...+..++.+.++++.+ ++||++++.+.+..++.++++.| +|.
T Consensus 190 an~~~~~~~~~~~~~l~~~~i~~iE-------~-P~~~~~~~~~~~l~~~~--~ipIa~dE~~~~~~~~~~~i~~~~~d~ 259 (368)
T 1sjd_A 190 ANTAYTLGDAPQLARLDPFGLLLIE-------Q-PLEEEDVLGHAELARRI--QTPICLDESIVSARAAADAIKLGAVQI 259 (368)
T ss_dssp CTTCCCGGGHHHHHTTGGGCCSEEE-------C-CSCTTCHHHHHHHHTTC--SSCEEESTTCCSHHHHHHHHHTTCCSE
T ss_pred ccCCCCHHHHHHHHHHHhcCCCeEe-------C-CCChhhHHHHHHHHHhC--CCCEEECCCcCCHHHHHHHHHcCCCCE
Confidence 31 12 3334445567877653 1 01123567777777665 79999999999999999999987 799
Q ss_pred EEEc
Q 018919 285 IFIG 288 (349)
Q Consensus 285 V~ig 288 (349)
|++-
T Consensus 260 v~ik 263 (368)
T 1sjd_A 260 VNIK 263 (368)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9983
|
| >3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.054 Score=48.52 Aligned_cols=80 Identities=25% Similarity=0.391 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH----------HHHHHHhCCCEE
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGI 285 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d----------v~kal~~GA~~V 285 (349)
+.|+.+.++|+|+++.+.+ ....+++.++.+. ++.+.||+-..+ ..+++..|||.+
T Consensus 148 ~~A~~a~~~g~~GvV~s~~-------------e~~~ir~~~~~~f-l~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~l 213 (239)
T 3tr2_A 148 RMATLAKSAGLDGVVCSAQ-------------EAALLRKQFDRNF-LLVTPGIRLETDEKGDQKRVMTPRAAIQAGSDYL 213 (239)
T ss_dssp HHHHHHHHHTCCEEECCHH-------------HHHHHHTTCCTTS-EEEECCBC----------CCBCHHHHHHHTCSEE
T ss_pred HHHHHHHHcCCCEEEECch-------------hHHHHHHhcCCCc-EEECCCcCCCCCCcCcccccCCHHHHHHcCCCEE
Confidence 4467778899999987521 1234445454334 778899985432 557888999999
Q ss_pred EEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 286 FIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 286 ~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
.+||+++.+ +.....++.+++++.
T Consensus 214 VvGr~I~~a------~dp~~a~~~i~~~i~ 237 (239)
T 3tr2_A 214 VIGRPITQS------TDPLKALEAIDKDIK 237 (239)
T ss_dssp EECHHHHTS------SSHHHHHHHHHHHC-
T ss_pred EEChHHhCC------CCHHHHHHHHHHHHh
Confidence 999998742 222345566666553
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.079 Score=49.06 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=59.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-...-. ....+.+..+++.+++++|||+.=|=.+-.++++ +-++|||++++-.|++
T Consensus 38 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 117 (303)
T 2wkj_A 38 VQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFY 117 (303)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCC
Confidence 4456789999999966544211111 1123455556666667899987666555566654 3348999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~e 313 (349)
+. ..++++.++++.+.+.
T Consensus 118 ~~---~s~~~l~~~f~~va~a 135 (303)
T 2wkj_A 118 YP---FSFEEHCDHYRAIIDS 135 (303)
T ss_dssp SC---CCHHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHHh
Confidence 63 2456666666666554
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=1.8 Score=39.57 Aligned_cols=179 Identities=13% Similarity=0.054 Sum_probs=104.4
Q ss_pred ceeecccccccccCChhhHHHHHHHHH-cCCeEEe--c---CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASA-AGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~-~G~~~~~--~---~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~ 137 (349)
|.++.|+.-.+-.+.++-..+++-.-+ .|+.+++ + ++...+.+|-.+ . .. -+.+...-. .+-..
T Consensus 9 ~a~vTPf~~dg~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ 87 (293)
T 1f6k_A 9 SALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLKE 87 (293)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC-SCHHH
T ss_pred EeeEcCCCCCCCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCC-CCHHH
Confidence 556667643332344444567777777 8876654 3 234456665322 1 22 344555432 45566
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
..++++.+++.|++++.+.. |. |.-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 88 ai~la~~a~~~Gadavlv~~--P~-----------y~~~------------~~~~l~~~f~~va~a~~lPiilYn~P~~t 142 (293)
T 1f6k_A 88 AVELGKYATELGYDCLSAVT--PF-----------YYKF------------SFPEIKHYYDTIIAETGSNMIVYSIPFLT 142 (293)
T ss_dssp HHHHHHHHHHHTCSEEEEEC--CC-----------SSCC------------CHHHHHHHHHHHHHHHCCCEEEEECHHHH
T ss_pred HHHHHHHHHhcCCCEEEECC--CC-----------CCCC------------CHHHHHHHHHHHHHhCCCCEEEEECcccc
Confidence 77889999999999987642 32 1101 111 256677888888999998664
Q ss_pred ---cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 ---LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 ---~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++...++.+.. +-+|.-+. .++..+.++.+.. +++.|+ +|. ..-++.++.+|++++.-+
T Consensus 143 g~~l~~~~~~~La~~pnIvgiK~s~----------gd~~~~~~~~~~~-~~f~v~-~G~---d~~~~~~l~~G~~G~is~ 207 (293)
T 1f6k_A 143 GVNMGIEQFGELYKNPKVLGVKFTA----------GDFYLLERLKKAY-PNHLIW-AGF---DEMMLPAASLGVDGAIGS 207 (293)
T ss_dssp CCCCCHHHHHHHHTSTTEEEEEECS----------CCHHHHHHHHHHC-TTSEEE-ECC---GGGHHHHHHTTCSEEEES
T ss_pred CcCCCHHHHHHHhcCCCEEEEEECC----------CCHHHHHHHHHhC-CCeEEE-ECc---HHHHHHHHHCCCcEEEeC
Confidence 4677777776532 22333321 1234444555442 355555 332 234778899999999999
Q ss_pred hHHH
Q 018919 289 RPVV 292 (349)
Q Consensus 289 ~~~l 292 (349)
.+-+
T Consensus 208 ~~n~ 211 (293)
T 1f6k_A 208 TFNV 211 (293)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8654
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=95.22 E-value=1.4 Score=41.93 Aligned_cols=234 Identities=11% Similarity=0.093 Sum_probs=117.1
Q ss_pred eeEcCeec---CcceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCCCCCCHHHHHhhCCCceEEE----------
Q 018919 63 TTVLGFKI---SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTSSVEEVASTGPGIRFFQ---------- 128 (349)
Q Consensus 63 ~~l~g~~~---~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~~~~~~e~i~~~~~~~~~~Q---------- 128 (349)
.+|.+..+ ..|++||=+|.....+-+.-..++++|+++|+-.+ +.++. .+.+. .|...-||
T Consensus 16 ~~~~~~~ig~~~~~~IIAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k---~~tl~--s~~~~~fq~~~~~~~~~y 90 (385)
T 1vli_A 16 FQIANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQ---ADRMY--QKDPGLYKTAAGKDVSIF 90 (385)
T ss_dssp EEETTEEEETTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBC---GGGGT--SCCC---------CCCHH
T ss_pred eeECCEEeCCCCCcEEEEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeec---cCccc--CcchhhhccCCCCCccHH
Confidence 34555555 35899998765432233334578999999999866 33332 22210 01000022
Q ss_pred -Eee--cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccccCCCCCCchHHHHHHHHHhcC
Q 018919 129 -LYV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEDVKWLQTITK 204 (349)
Q Consensus 129 -l~~--~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~i~~i~~~~~ 204 (349)
+|. .-..+....+.+.+++.|...+ .+|.. .+.-|+-..+.+|- ++..++ -..+..|+++.+ ++
T Consensus 91 e~~~~~~l~~e~~~~L~~~~~~~Gi~~~----stpfD-~~svd~l~~~~vd~~KIgS~~------~~N~pLL~~va~-~g 158 (385)
T 1vli_A 91 SLVQSMEMPAEWILPLLDYCREKQVIFL----STVCD-EGSADLLQSTSPSAFKIASYE------INHLPLLKYVAR-LN 158 (385)
T ss_dssp HHGGGBSSCGGGHHHHHHHHHHTTCEEE----CBCCS-HHHHHHHHTTCCSCEEECGGG------TTCHHHHHHHHT-TC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCcEE----EccCC-HHHHHHHHhcCCCEEEECccc------ccCHHHHHHHHh-cC
Confidence 111 1245666777778888887764 23321 22223322332221 111111 111567887765 69
Q ss_pred CcEEEEEe-cCHHHHHH----HHHcCC-CEEEEecCCCCCCCC--chhhHHHHHHHHHHhcCCCcEEEecCCCC-HHHHH
Q 018919 205 LPILVKGV-LTAEDARI----AVQAGA-AGIIVSNHGARQLDY--VPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVF 275 (349)
Q Consensus 205 ~pv~vK~v-~~~~~a~~----a~~~G~-d~I~v~~~gg~~~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~-~~dv~ 275 (349)
.||++|.- .+.++... +.+.|. +.+.+ |+-+.... ....+..++.+++..+ ++||..++=-.- ..=.+
T Consensus 159 KPViLStGmaTl~Ei~~Ave~i~~~Gn~~iiLl--hc~s~YPtp~~~~nL~aI~~Lk~~f~-~lpVG~SdHt~G~~~~~~ 235 (385)
T 1vli_A 159 RPMIFSTAGAEISDVHEAWRTIRAEGNNQIAIM--HCVAKYPAPPEYSNLSVIPMLAAAFP-EAVIGFSDHSEHPTEAPC 235 (385)
T ss_dssp SCEEEECTTCCHHHHHHHHHHHHTTTCCCEEEE--EECSSSSCCGGGCCTTHHHHHHHHST-TSEEEEEECCSSSSHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHCCCCcEEEE--eccCCCCCChhhcCHHHHHHHHHHcC-CCCEEeCCCCCCchHHHH
Confidence 99999975 46666444 445787 44444 32221111 1123556666666542 478865442222 34455
Q ss_pred HHHHhCCCEEEEchHHHHHHhhcCHHH---H-HHHHHHHHHHHHHHH
Q 018919 276 KALALGASGIFIGRPVVYSLAAEGEKG---V-RRVLEMLREEFELAM 318 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l~~~~~~G~~g---v-~~~l~~l~~el~~~m 318 (349)
.|+++||+ +|=+-|--.-+..|.++ + -+-+..+.++++..-
T Consensus 236 AAvAlGA~--iIEkHftldra~~G~D~~~SL~P~ef~~lv~~ir~i~ 280 (385)
T 1vli_A 236 AAVRLGAK--LIEKHFTIDKNLPGADHSFALNPDELKEMVDGIRKTE 280 (385)
T ss_dssp HHHHTTCS--EEEEEBCSCTTSSCSSCTTSBCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCC--EEEeCCCccccCCCCchhhhCCHHHHHHHHHHHHHHH
Confidence 68889999 44443321111123211 0 123556666666666
|
| >3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.055 Score=48.94 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=53.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH-H---------HHHHHHhCCCEE
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-D---------VFKALALGASGI 285 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~-d---------v~kal~~GA~~V 285 (349)
+.|+.+.++|+|+++++. ..+..+++.++.+. ++.+.||+-.. + ..++++.|||.+
T Consensus 166 ~~A~~a~~aG~~GvV~sa-------------~e~~~iR~~~g~~f-l~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~i 231 (255)
T 3ldv_A 166 RLATLTKNAGLDGVVCSA-------------QEASLLKQHLGREF-KLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYL 231 (255)
T ss_dssp HHHHHHHHTTCSEEECCH-------------HHHHHHHHHHCTTS-EEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCEEEECH-------------HHHHHHHHhcCCCc-EEEeCCcccCcCCccceeccCCHHHHHHcCCCEE
Confidence 446677889999998742 23556666665444 67888898532 2 567888999999
Q ss_pred EEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 286 FIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 286 ~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
.+||+++.+ +.....++.+++|+
T Consensus 232 VvGr~I~~a------~dp~~a~~~i~~ei 254 (255)
T 3ldv_A 232 VIGRPITQA------AHPEVVLEEINSSL 254 (255)
T ss_dssp EECHHHHTC------SCHHHHHHHHHHHC
T ss_pred EECHHHhCC------CCHHHHHHHHHHhh
Confidence 999998742 22234556666654
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.029 Score=51.28 Aligned_cols=39 Identities=31% Similarity=0.341 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++++|+.+++||++.+ +.++++++.+ .|||+++|.+
T Consensus 191 ~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGS 230 (271)
T 1ujp_A 191 KDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGS 230 (271)
T ss_dssp HHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECH
T ss_pred HHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEECh
Confidence 5779999998899999887 4679999997 9999999953
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=95.21 E-value=0.13 Score=49.06 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=64.6
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCC----Cch-HHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL----GKM-DEDVK 197 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~----~~~-~~~i~ 197 (349)
.|.++.+-...+.+.+.+.++.++++|+++|.++=.+.. |.. ...|. ..+..+-.+ ... ++.++
T Consensus 221 ~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~---r~~-----~~~~~---~~~~~gGlSG~~i~p~a~~~v~ 289 (367)
T 3zwt_A 221 PAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVS---RPA-----GLQGA---LRSETGGLSGKPLRDLSTQTIR 289 (367)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSC---CCT-----TCCCT---TTTSSSEEEEGGGHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcc---ccc-----ccccc---cccccCCcCCcccchhHHHHHH
Confidence 467788765555567788999999999999987522110 100 00010 000000011 112 67899
Q ss_pred HHHHhc--CCcEEE-EEecCHHHHHHHHHcCCCEEEEe
Q 018919 198 WLQTIT--KLPILV-KGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 198 ~i~~~~--~~pv~v-K~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++++.+ ++||+. .++.+.++|.+++++|||+|.+.
T Consensus 290 ~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vg 327 (367)
T 3zwt_A 290 EMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLY 327 (367)
T ss_dssp HHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 999998 799865 45789999999999999999984
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.047 Score=50.91 Aligned_cols=92 Identities=14% Similarity=0.238 Sum_probs=58.8
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-....+.+..+++.+++++|||+.=|=.+-.++++ +-.+|||+|++-.|++
T Consensus 49 i~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 128 (315)
T 3si9_A 49 VEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYY 128 (315)
T ss_dssp HHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45577899999998665432110 111123455666666667899998766666777664 4458999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. -.++++.++++.+.+
T Consensus 129 ~~---~~~~~l~~~f~~va~ 145 (315)
T 3si9_A 129 NR---PNQRGLYTHFSSIAK 145 (315)
T ss_dssp SC---CCHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHH
Confidence 63 234555555544433
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.20 E-value=1.9 Score=39.80 Aligned_cols=178 Identities=11% Similarity=0.098 Sum_probs=103.1
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHH-------hhCC-CceEEEEeecCChhHH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~-------~~~~-~~~~~Ql~~~~~~~~~ 138 (349)
.|.++.|+.-.+-.+.++-..+++-.-+.|+.+++ + ++...+.+|.. +... .+.+..... .+...+
T Consensus 13 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~-~~t~~a 91 (313)
T 3dz1_A 13 FAIAPTPFHDDGKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSA-PGFAAM 91 (313)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCC-SSHHHH
T ss_pred EEEeeCCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecCC-CCHHHH
Confidence 36667777533333444555777777888986554 2 33445666532 2222 345555432 456677
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcC--CcEEEEEe---
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITK--LPILVKGV--- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~--~pv~vK~v--- 212 (349)
.++++.+++.|++++.+. .|.. .| +.+ ..+..+.+.+.++ +||++=.+
T Consensus 92 i~la~~A~~~Gadavlv~--~P~~------------~~------------s~~~l~~~f~~va~a~~~~lPiilYn~P~~ 145 (313)
T 3dz1_A 92 RRLARLSMDAGAAGVMIA--PPPS------------LR------------TDEQITTYFRQATEAIGDDVPWVLQDYPLT 145 (313)
T ss_dssp HHHHHHHHHHTCSEEEEC--CCTT------------CC------------SHHHHHHHHHHHHHHHCTTSCEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEC--CCCC------------CC------------CHHHHHHHHHHHHHhCCCCCcEEEEeCccc
Confidence 889999999999998762 2310 01 111 2566788888888 99998664
Q ss_pred ----cCHHHHHHHHH-c-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc----CCCcEEEecCCCCHHHHHH-HHHhC
Q 018919 213 ----LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ----GRIPVFLDGGVRRGTDVFK-ALALG 281 (349)
Q Consensus 213 ----~~~~~a~~a~~-~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~----~~ipvia~GGI~~~~dv~k-al~~G 281 (349)
.+++...++.+ . .+-+|.-+. ...+..+.++.+..+ +++.|+ +|. ....+. ++++|
T Consensus 146 tg~~l~~~~~~~La~~~pnIvgiKd~~---------~~~~~~~~~~~~~~~~~~~~~f~v~-~G~---d~~~l~~~l~~G 212 (313)
T 3dz1_A 146 LSVVMTPKVIRQIVMDSASCVMLKHED---------WPGLEKITTLRGFQKDGSLRPLSIL-CGN---GGLFLDFEMERG 212 (313)
T ss_dssp HCCCCCHHHHHHHHHHCSSEEEEEECC---------SSCHHHHHHHHHHHHHTSSCCCEEE-ECG---GGTTHHHHHHHT
T ss_pred cCcCCCHHHHHHHHHhCCCEEEEEcCC---------CCCHHHHHHHHHhcCccCCCCeEEE-eCC---cHHHHHHHHHCC
Confidence 46787777764 2 344444311 112444555555443 455554 331 111344 58999
Q ss_pred CCEEEEch
Q 018919 282 ASGIFIGR 289 (349)
Q Consensus 282 A~~V~ig~ 289 (349)
|++++.|.
T Consensus 213 ~~G~i~~~ 220 (313)
T 3dz1_A 213 ADGAMTGY 220 (313)
T ss_dssp CCEEEECC
T ss_pred CcEEEeCc
Confidence 99998775
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.12 Score=48.29 Aligned_cols=100 Identities=18% Similarity=0.099 Sum_probs=62.5
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC---ch-HHHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG---KM-DEDVKW 198 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~---~~-~~~i~~ 198 (349)
.+.++.+-...+.+.+.+.++.++++|+++|.++-.... +. +.+ .+. . .....++..+ .. ++.+++
T Consensus 212 ~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~---~~-~~~----~~~-~-~~~~gg~~g~~~~~~~~~~i~~ 281 (336)
T 1f76_A 212 VPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLD---RS-LVQ----GMK-N-CDQTGGLSGRPLQLKSTEIIRR 281 (336)
T ss_dssp CCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCC---CT-TST----TST-T-TTCSSEEEEGGGHHHHHHHHHH
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc---cc-ccc----ccc-c-cccCCCcCCchhHHHHHHHHHH
Confidence 466777654334456678889999999999987532210 11 000 000 0 0000000001 12 577899
Q ss_pred HHHhc--CCcEEEE-EecCHHHHHHHHHcCCCEEEEe
Q 018919 199 LQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 199 i~~~~--~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+++.+ ++||+.= ++.+.+++.+++++|||+|.+.
T Consensus 282 i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~ig 318 (336)
T 1f76_A 282 LSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIY 318 (336)
T ss_dssp HHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEee
Confidence 99988 8998754 4789999999999999999883
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.11 Score=50.49 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK 210 (349)
+++.+.+.++++.+.|++++.+++... ... .+.++.+|+.+ +++|.+.
T Consensus 198 ~~e~~~~~a~~~~~~Gf~~vKik~g~~-----------------------------~~~d~e~v~avR~a~G~d~~l~vD 248 (441)
T 2hxt_A 198 SDEKLVRLAKEAVADGFRTIKLKVGAN-----------------------------VQDDIRRCRLARAAIGPDIAMAVD 248 (441)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSC-----------------------------HHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCC-----------------------------HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 667777888888899999999887531 122 46788999877 5778765
Q ss_pred Ee--cCHHHHH----HHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CC
Q 018919 211 GV--LTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-AS 283 (349)
Q Consensus 211 ~v--~~~~~a~----~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~ 283 (349)
.- -+.+++. .+.+.|++.|-- ...+..++.+.++++.+. .+||++++.+.+..++.++++.| +|
T Consensus 249 an~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d 319 (441)
T 2hxt_A 249 ANQRWDVGPAIDWMRQLAEFDIAWIEE--------PTSPDDVLGHAAIRQGIT-PVPVSTGEHTQNRVVFKQLLQAGAVD 319 (441)
T ss_dssp CTTCCCHHHHHHHHHTTGGGCCSCEEC--------CSCTTCHHHHHHHHHHHT-TSCEEECTTCCSHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCeeeC--------CCCHHHHHHHHHHHhhCC-CCCEEEeCCcCCHHHHHHHHHcCCCC
Confidence 32 3555543 345567776521 011235677777877662 59999999999999999999987 79
Q ss_pred EEEEc
Q 018919 284 GIFIG 288 (349)
Q Consensus 284 ~V~ig 288 (349)
.|++-
T Consensus 320 ~v~ik 324 (441)
T 2hxt_A 320 LIQID 324 (441)
T ss_dssp EECCC
T ss_pred EEEeC
Confidence 99884
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=95.17 E-value=0.15 Score=48.41 Aligned_cols=71 Identities=13% Similarity=0.062 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHH
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAE 216 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~ 216 (349)
...++++++++.|++.|.++..... ..| +..++.++++|+.+++||++-+-.+++
T Consensus 252 ~~~~~a~~l~~~G~d~i~v~~~~~~------------~~~-------------~~~~~~~~~v~~~~~iPvi~~Ggit~~ 306 (364)
T 1vyr_A 252 DALYLIEELAKRGIAYLHMSETDLA------------GGK-------------PYSEAFRQKVRERFHGVIIGAGAYTAE 306 (364)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCBTT------------BCC-------------CCCHHHHHHHHHHCCSEEEEESSCCHH
T ss_pred HHHHHHHHHHHhCCCEEEEecCccc------------CCC-------------cccHHHHHHHHHHCCCCEEEECCcCHH
Confidence 4566788999999999987642110 001 001677899999999999887756999
Q ss_pred HHHHHHHcC-CCEEEEe
Q 018919 217 DARIAVQAG-AAGIIVS 232 (349)
Q Consensus 217 ~a~~a~~~G-~d~I~v~ 232 (349)
+++.+++.| ||+|.+.
T Consensus 307 ~a~~~l~~g~aD~V~~g 323 (364)
T 1vyr_A 307 KAEDLIGKGLIDAVAFG 323 (364)
T ss_dssp HHHHHHHTTSCSEEEES
T ss_pred HHHHHHHCCCccEEEEC
Confidence 999999998 9999883
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.082 Score=48.60 Aligned_cols=91 Identities=18% Similarity=0.324 Sum_probs=57.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+|+|++.++.|-...-. ....+.+..+++.+++++|||+.-|=.+-.++++ |-++|||++++-.|++
T Consensus 27 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 106 (289)
T 2yxg_A 27 INFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYY 106 (289)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 4567889999999966544211111 1123455556666667899987666555566654 3348999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLR 311 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~ 311 (349)
+. -.++++.++++.+.
T Consensus 107 ~~---~s~~~l~~~f~~ia 122 (289)
T 2yxg_A 107 NK---PTQEGLRKHFGKVA 122 (289)
T ss_dssp SC---CCHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHH
Confidence 53 23455555554443
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.059 Score=49.97 Aligned_cols=90 Identities=21% Similarity=0.304 Sum_probs=57.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-....+.+..+++.+++++|||+.-|=.+-.++++ +-.+|||+|++-.|++
T Consensus 42 v~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 121 (304)
T 3l21_A 42 ANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYY 121 (304)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45577899999999765442111 111123455666666777899998776666677664 3348999999999987
Q ss_pred HHHhhcCHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEML 310 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l 310 (349)
+. -.++++.++++.+
T Consensus 122 ~~---~s~~~l~~~f~~v 136 (304)
T 3l21_A 122 SK---PPQRGLQAHFTAV 136 (304)
T ss_dssp SC---CCHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHH
Confidence 63 1345554444443
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.36 Score=45.20 Aligned_cols=116 Identities=22% Similarity=0.183 Sum_probs=82.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK 210 (349)
.+++.+.+.++++.+.|++++.++++.. ++. .+.++.+|+.- ++++.+-
T Consensus 138 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~-----------------------------~~~d~~~v~avr~~g~~~~l~vD 188 (345)
T 2zad_A 138 DTVENRVKEAKKIFEEGFRVIKIKVGEN-----------------------------LKEDIEAVEEIAKVTRGAKYIVD 188 (345)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCSC-----------------------------HHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHcCcCEEEEeecCC-----------------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence 4677777788888899999999877531 111 45688888762 3566553
Q ss_pred Ee--cCHHH----HHHHHHcCCC--EEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-
Q 018919 211 GV--LTAED----ARIAVQAGAA--GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG- 281 (349)
Q Consensus 211 ~v--~~~~~----a~~a~~~G~d--~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G- 281 (349)
.- -+.++ ++.+.+.|++ .|- + ...+..++.+.++++.+ ++||++++.+.+..|+.+++..|
T Consensus 189 an~~~~~~~a~~~~~~l~~~~i~~~~iE-------~-P~~~~~~~~~~~l~~~~--~ipia~dE~~~~~~~~~~~i~~~~ 258 (345)
T 2zad_A 189 ANMGYTQKEAVEFARAVYQKGIDIAVYE-------Q-PVRREDIEGLKFVRFHS--PFPVAADESARTKFDVMRLVKEEA 258 (345)
T ss_dssp CTTCSCHHHHHHHHHHHHHTTCCCSEEE-------C-CSCTTCHHHHHHHHHHS--SSCEEESTTCCSHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCeeeee-------C-CCCcccHHHHHHHHHhC--CCCEEEeCCcCCHHHHHHHHHhCC
Confidence 21 24444 4556778888 552 1 01233577788888776 79999999999999999999987
Q ss_pred CCEEEE
Q 018919 282 ASGIFI 287 (349)
Q Consensus 282 A~~V~i 287 (349)
+|.|++
T Consensus 259 ~d~v~i 264 (345)
T 2zad_A 259 VDYVNI 264 (345)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 899999
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.16 Score=46.81 Aligned_cols=161 Identities=22% Similarity=0.285 Sum_probs=91.5
Q ss_pred HHHHHHHHcCCeEEecCCCCCCHHHHHhhC---CCceEEEEee--------cCChhHHHHHHHHHHHcCCCEEE--EecC
Q 018919 92 ATARAASAAGTIMTLSSWSTSSVEEVASTG---PGIRFFQLYV--------YKDRNVVAQLVRRAERAGFKAIA--LTVD 158 (349)
Q Consensus 92 ~la~aa~~~G~~~~~~~~~~~~~e~i~~~~---~~~~~~Ql~~--------~~~~~~~~~~~~~~~~~G~~~i~--i~~d 158 (349)
.+..++.+.|.-.++.+-.. ++++.-.. .+..+-.+.. ..+...+.--++.+.+.|++++. ++++
T Consensus 75 ~~~~~~~~~Gvdavl~~~gi--~~d~~Li~~L~~~tv~gs~~~ggl~g~~~~~d~~~~~~sVe~AvrlGADaV~~l~~i~ 152 (307)
T 3fok_A 75 RMAIALSRPGVDGVLGTPDI--IDDLAALGLLDDKIVVGSMNRGGLRGASFEMDDRYTGYNVSSMVDRGVDFAKTLVRIN 152 (307)
T ss_dssp HHHHHHHSTTCCEEEECHHH--HHHHHHTTCCTTCEEEEECCCCSCTTCTTTTSCCCCSCCHHHHHHHTCCEEEEEEEEC
T ss_pred HHHHHHhccCCCEEEECcch--hhcccceEEecCcccccccCccccccCCCCccccccccCHHHHHHCCCCEEEEEEEEC
Confidence 56666788898888754322 24432111 1221112221 11111222246677788999976 5554
Q ss_pred CCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH---HHhcCCcEEEE--E-------e---cCHH----HHH
Q 018919 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL---QTITKLPILVK--G-------V---LTAE----DAR 219 (349)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i---~~~~~~pv~vK--~-------v---~~~~----~a~ 219 (349)
.-. |. +.+.++.+.++ .+.+++|+++- . + .+++ -++
T Consensus 153 ~Gs--------------~~-----------e~~~l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaR 207 (307)
T 3fok_A 153 LSD--------------AG-----------TAPTLEATAHAVNEAAAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVA 207 (307)
T ss_dssp TTC--------------TT-----------HHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHH
T ss_pred CCC--------------hh-----------HHHHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHH
Confidence 210 00 00113333333 34579998774 1 1 2343 367
Q ss_pred HHHHcCCC----EEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC--HHHHH----HHHH-hCCCEEEEc
Q 018919 220 IAVQAGAA----GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR--GTDVF----KALA-LGASGIFIG 288 (349)
Q Consensus 220 ~a~~~G~d----~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~--~~dv~----kal~-~GA~~V~ig 288 (349)
.+.+.|+| .|.+-- . +...++.+.+ .+||+..||=.. .++++ +++. .||.++.+|
T Consensus 208 iAaELGADs~~tivK~~y-------~-----e~f~~Vv~a~--~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vG 273 (307)
T 3fok_A 208 IAAGLGNDSSYTWMKLPV-------V-----EEMERVMEST--TMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVG 273 (307)
T ss_dssp HHHTCSSCCSSEEEEEEC-------C-----TTHHHHGGGC--SSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEEC
T ss_pred HHHHhCCCcCCCEEEeCC-------c-----HHHHHHHHhC--CCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeec
Confidence 78999999 888821 1 3346666665 699999999874 45655 4667 699999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
|-+++
T Consensus 274 RNIfQ 278 (307)
T 3fok_A 274 RTLLY 278 (307)
T ss_dssp TTTSS
T ss_pred hhhcc
Confidence 97754
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.21 Score=47.06 Aligned_cols=88 Identities=18% Similarity=0.155 Sum_probs=61.5
Q ss_pred ceEEEEeec------CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHH
Q 018919 124 IRFFQLYVY------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDV 196 (349)
Q Consensus 124 ~~~~Ql~~~------~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i 196 (349)
+.++.+-.. .+.+...++++.+++.|++.|.++...... ....| ..+.. ++.+
T Consensus 221 pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~---------~~~~~-----------~~~~~~~~~~ 280 (349)
T 3hgj_A 221 PLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVL---------RVRIP-----------LAPGFQVPFA 280 (349)
T ss_dssp CEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCS---------SSCCC-----------CCTTTTHHHH
T ss_pred eEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCc---------ccccC-----------CCccccHHHH
Confidence 466666431 245667788999999999999886532110 00001 01223 7789
Q ss_pred HHHHHhcCCcEEEEE-ecCHHHHHHHHHcC-CCEEEE
Q 018919 197 KWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 197 ~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G-~d~I~v 231 (349)
+++++.+++||++-+ +.++++|+.+++.| +|.|.+
T Consensus 281 ~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~i 317 (349)
T 3hgj_A 281 DAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLL 317 (349)
T ss_dssp HHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEe
Confidence 999999999998765 46899999999999 999988
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.062 Score=50.10 Aligned_cols=92 Identities=21% Similarity=0.330 Sum_probs=58.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-....+.+..+++.+++++|||+.-|=.+-.++++ +-++|||+|++-.|++
T Consensus 50 v~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y 129 (314)
T 3qze_A 50 VDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYY 129 (314)
T ss_dssp HHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 34567899999999665332110 111123455556666667899998766666677665 3358999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. -.++++.++++.+.+
T Consensus 130 ~~---~s~~~l~~~f~~va~ 146 (314)
T 3qze_A 130 NK---PTQEGMYQHFRHIAE 146 (314)
T ss_dssp SC---CCHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHH
Confidence 63 234555555554433
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.029 Score=50.68 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=33.4
Q ss_pred HHHHHHHHH-hcC-CcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQT-ITK-LPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~-~~~-~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.++.+++ ..+ +||++-+ +.+++++..+.+.|+|+|.+.
T Consensus 165 ~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVg 207 (268)
T 2htm_A 165 RALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVN 207 (268)
T ss_dssp HHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 355888888 567 9988755 689999999999999999984
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.18 Score=47.57 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEE-ec
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKG-VL 213 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~-v~ 213 (349)
.+.+.++.++++|+++|.++-..... ++. +.. .+ ..+.. |+.++++++.+ ++||++-+ +.
T Consensus 145 ~~~~~a~~l~~aG~d~I~V~~r~~~~---------g~~-g~~--~~-----~~~~~~~~~i~~ik~~~~~iPVianGgI~ 207 (350)
T 3b0p_A 145 GLAQSVEAMAEAGVKVFVVHARSALL---------ALS-TKA--NR-----EIPPLRHDWVHRLKGDFPQLTFVTNGGIR 207 (350)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCBC---------------------------CCCCCHHHHHHHHHHCTTSEEEEESSCC
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhc---------ccC-ccc--cc-----CCCcccHHHHHHHHHhCCCCeEEEECCcC
Confidence 56788899999999999886432110 111 000 00 01123 88999999998 89988755 57
Q ss_pred CHHHHHHHHHcCCCEEEEe
Q 018919 214 TAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 214 ~~~~a~~a~~~G~d~I~v~ 232 (349)
+++++..+++ |||+|.+.
T Consensus 208 s~eda~~~l~-GaD~V~iG 225 (350)
T 3b0p_A 208 SLEEALFHLK-RVDGVMLG 225 (350)
T ss_dssp SHHHHHHHHT-TSSEEEEC
T ss_pred CHHHHHHHHh-CCCEEEEC
Confidence 9999999998 99999984
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.079 Score=49.78 Aligned_cols=92 Identities=12% Similarity=0.072 Sum_probs=56.9
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-...-. ....+.+..+++.+++++|||+.-|=.+-.++++ |-.+|||+|++-.|++
T Consensus 61 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y 140 (332)
T 2r8w_A 61 IARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSY 140 (332)
T ss_dssp HHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 3456788999999976544211101 1123555566666667899987655555566553 3348999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. -.++++.++++.+.+
T Consensus 141 ~~---~s~~~l~~~f~~VA~ 157 (332)
T 2r8w_A 141 TP---LTQEEAYHHFAAVAG 157 (332)
T ss_dssp SC---CCHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHH
Confidence 53 234555555544433
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=95.10 E-value=1.2 Score=41.39 Aligned_cols=181 Identities=13% Similarity=0.110 Sum_probs=105.4
Q ss_pred ceeecccc-cccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhH
Q 018919 73 PIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 73 Pi~iApm~-~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~ 137 (349)
|-++.|+. -.+-.+.+.-..+++-.-+.|+.+++ + +....+.+|..+ . .. -+.+..... .+-..
T Consensus 16 ~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ 94 (318)
T 3qfe_A 16 CPAVTFFDSKTDTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGA-HSTRQ 94 (318)
T ss_dssp EECCCCEETTTTEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCC-SSHHH
T ss_pred EeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHH
Confidence 55666764 22223444455777777788987654 2 334456665322 1 22 355666533 46667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
..++++.+++.|++++.+. .|.. |.-| .+.+ ..+..+.+.+.+++||++=.+
T Consensus 95 ai~la~~a~~~Gadavlv~--~P~y----------~~kp-----------~~~~~l~~~f~~ia~a~~lPiilYn~P~~t 151 (318)
T 3qfe_A 95 VLEHINDASVAGANYVLVL--PPAY----------FGKA-----------TTPPVIKSFFDDVSCQSPLPVVIYNFPGVC 151 (318)
T ss_dssp HHHHHHHHHHHTCSEEEEC--CCCC-------------C-----------CCHHHHHHHHHHHHHHCSSCEEEEECCC--
T ss_pred HHHHHHHHHHcCCCEEEEe--CCcc----------cCCC-----------CCHHHHHHHHHHHHhhCCCCEEEEeCCccc
Confidence 7889999999999998762 2311 0001 0111 256678888888999988664
Q ss_pred ----cCHHHHHHHHH-cC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 018919 213 ----LTAEDARIAVQ-AG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGI 285 (349)
Q Consensus 213 ----~~~~~a~~a~~-~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~-~~ipvia~GGI~~~~dv~kal~~GA~~V 285 (349)
.+++...++.+ .. +-+|.-+. .++..+.++.+.+. +++.|+. |- ...++.++++||+++
T Consensus 152 ~g~~l~~~~~~~La~~~pnIvgiKdss----------gd~~~~~~~~~~~~~~~f~v~~-G~---d~~~l~~l~~G~~G~ 217 (318)
T 3qfe_A 152 NGIDLDSDMITTIARKNPNVVGVKLTC----------ASVGKITRLAATLPPAAFSVFG-GQ---SDFLIGGLSVGSAGC 217 (318)
T ss_dssp --CCCCHHHHHHHHHHCTTEEEEEESS----------CCHHHHHHHHHHSCGGGCEEEE-SC---GGGHHHHHHTTCCEE
T ss_pred CCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCCEEEEE-ec---HHHHHHHHHCCCCEE
Confidence 34677777765 32 33333321 13445556655542 3455543 31 245678899999999
Q ss_pred EEchHH
Q 018919 286 FIGRPV 291 (349)
Q Consensus 286 ~ig~~~ 291 (349)
+-+.+-
T Consensus 218 is~~an 223 (318)
T 3qfe_A 218 IAAFAN 223 (318)
T ss_dssp ECGGGG
T ss_pred EecHHH
Confidence 988753
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.34 Score=46.28 Aligned_cols=138 Identities=13% Similarity=0.083 Sum_probs=86.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhh--h--hcCCCCcCc--c-cccCCC-CCCchHHHHHHHHHhcC
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK--N--RFTLPPFLT--L-KNFQGL-DLGKMDEDVKWLQTITK 204 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~--~--~~~~p~~~~--~-~~~~~~-~~~~~~~~i~~i~~~~~ 204 (349)
.+.+...++++.+.++|++++-...-.| +.+- + .|+.+.+.+ . .-+..+ ...+.++.|++.++..+
T Consensus 41 Gsle~A~~li~~Ak~aGAdavKfQ~~k~------~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~G 114 (385)
T 1vli_A 41 GKLDQAFALIDAAAEAGADAVKFQMFQA------DRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQ 114 (385)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCBCG------GGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCEEeeeeecc------CcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHcC
Confidence 4667788999999999999986533222 1100 0 011110000 0 000000 11122677888888889
Q ss_pred CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH----h
Q 018919 205 LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA----L 280 (349)
Q Consensus 205 ~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~----~ 280 (349)
++++. .+.+.+.+..+.+.|+|.+.|... ....+..|.++.+. +.|||.+-|..|-+++..|+. .
T Consensus 115 i~~~s-tpfD~~svd~l~~~~vd~~KIgS~-------~~~N~pLL~~va~~---gKPViLStGmaTl~Ei~~Ave~i~~~ 183 (385)
T 1vli_A 115 VIFLS-TVCDEGSADLLQSTSPSAFKIASY-------EINHLPLLKYVARL---NRPMIFSTAGAEISDVHEAWRTIRAE 183 (385)
T ss_dssp CEEEC-BCCSHHHHHHHHTTCCSCEEECGG-------GTTCHHHHHHHHTT---CSCEEEECTTCCHHHHHHHHHHHHTT
T ss_pred CcEEE-ccCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHC
Confidence 98874 567889999999999999999532 12246677766643 799999999999999887765 4
Q ss_pred CCCEEEE
Q 018919 281 GASGIFI 287 (349)
Q Consensus 281 GA~~V~i 287 (349)
|..-|.+
T Consensus 184 Gn~~iiL 190 (385)
T 1vli_A 184 GNNQIAI 190 (385)
T ss_dssp TCCCEEE
T ss_pred CCCcEEE
Confidence 6644444
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.17 Score=48.31 Aligned_cols=119 Identities=16% Similarity=0.102 Sum_probs=85.1
Q ss_pred CChhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEE
Q 018919 133 KDRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPIL 208 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~ 208 (349)
.+++.+.+.++++.+. |++.+-+.++.+ +++. .+.++.+|+.+ +.++.
T Consensus 166 ~~~e~~~~~a~~~~~~~G~~~~KlKvG~~----------------------------~~~~d~~~v~avR~a~G~~~~l~ 217 (383)
T 3toy_A 166 LDARDDERTLRTACDEHGFRAIKSKGGHG----------------------------DLATDEAMIKGLRALLGPDIALM 217 (383)
T ss_dssp CCHHHHHHHHHHHHHTSCCCEEEEECCSS----------------------------CHHHHHHHHHHHHHHHCTTSEEE
T ss_pred CCHHHHHHHHHHHHHccCCcEEEEecCCC----------------------------CHHHHHHHHHHHHHHhCCCCeEE
Confidence 4677777788888888 999998877532 1122 46788899886 57787
Q ss_pred EEEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-
Q 018919 209 VKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG- 281 (349)
Q Consensus 209 vK~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G- 281 (349)
+..- -+.++| +.+.+.|++.|- + ...+..++.+.++++.. .+||+++..+.+..|+.++++.|
T Consensus 218 vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------e-P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~a 287 (383)
T 3toy_A 218 LDFNQSLDPAEATRRIARLADYDLTWIE-------E-PVPQENLSGHAAVRERS--EIPIQAGENWWFPRGFAEAIAAGA 287 (383)
T ss_dssp EECTTCSCHHHHHHHHHHHGGGCCSEEE-------C-CSCTTCHHHHHHHHHHC--SSCEEECTTCCHHHHHHHHHHHTC
T ss_pred EeCCCCCCHHHHHHHHHHHHhhCCCEEE-------C-CCCcchHHHHHHHHhhc--CCCEEeCCCcCCHHHHHHHHHcCC
Confidence 7542 345554 556667877763 1 11223567778888776 79999999999999999999987
Q ss_pred CCEEEEch
Q 018919 282 ASGIFIGR 289 (349)
Q Consensus 282 A~~V~ig~ 289 (349)
+|.|++--
T Consensus 288 ~d~v~ik~ 295 (383)
T 3toy_A 288 SDFIMPDL 295 (383)
T ss_dssp CSEECCCT
T ss_pred CCEEEeCc
Confidence 78888764
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.052 Score=50.64 Aligned_cols=91 Identities=13% Similarity=0.110 Sum_probs=57.9
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-....+.+..+++.+++++|||+.-|=.+-.++++ +-.+|||+|++-.|++
T Consensus 51 v~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 130 (315)
T 3na8_A 51 IERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISY 130 (315)
T ss_dssp HHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45577899999998665332110 111123455666666667899998766566666664 4458999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLR 311 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~ 311 (349)
+. -.++++.++++.+.
T Consensus 131 ~~---~s~~~l~~~f~~va 146 (315)
T 3na8_A 131 WK---LNEAEVFQHYRAVG 146 (315)
T ss_dssp SC---CCHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHH
Confidence 63 23455555544443
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.12 Score=49.75 Aligned_cols=130 Identities=19% Similarity=0.152 Sum_probs=87.5
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK 210 (349)
+++.+.+.++++.+.|++++-+.+.++..+.. +. .+. ..+.+. .+.++.+|+.+ +.+|.+.
T Consensus 151 ~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~~------g~-~~~---------~~~~~~d~~~v~avR~a~G~d~~l~vD 214 (404)
T 4e5t_A 151 DADMAAEAAAKAVDQGFTAVKFDPAGAYTIYD------GH-QPS---------LEDLERSEAFCKQIRAAVGTKADLLFG 214 (404)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCSCCCBTTC------SB-CCC---------HHHHHHHHHHHHHHHHHHGGGSEEEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEeeCCCCCCcccc------cc-ccc---------HHHHHHHHHHHHHHHHHcCCCCeEEEe
Confidence 56777777778888899999888765421100 00 000 001122 46688999887 5788876
Q ss_pred Ee--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CC
Q 018919 211 GV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-AS 283 (349)
Q Consensus 211 ~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~ 283 (349)
.- -+.++| +.+.+.|++.|-= ...+..++.+.++++.+ ++||++++.+.+..|+.++++.| +|
T Consensus 215 an~~~~~~~A~~~~~~l~~~~i~~iEe--------P~~~~~~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~a~d 284 (404)
T 4e5t_A 215 THGQFTVSGAKRLARRLEAYDPLWFEE--------PIPPEKPEDMAEVARYT--SIPVATGERLCTKYEFSRVLETGAAS 284 (404)
T ss_dssp CCSCBCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHHC--SSCEEECTTCCHHHHHHHHHHHTCCS
T ss_pred CCCCcCHHHHHHHHHHHhhcCCcEEEC--------CCCcccHHHHHHHHhhC--CCCEEeCCCcCCHHHHHHHHHhCCCC
Confidence 42 345554 5566788887741 11223577788888876 79999999999999999999987 78
Q ss_pred EEEEch
Q 018919 284 GIFIGR 289 (349)
Q Consensus 284 ~V~ig~ 289 (349)
.|++--
T Consensus 285 ~v~~d~ 290 (404)
T 4e5t_A 285 ILQMNL 290 (404)
T ss_dssp EECCCT
T ss_pred EEecCc
Confidence 888764
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=95.03 E-value=1.1 Score=40.96 Aligned_cols=133 Identities=21% Similarity=0.270 Sum_probs=77.4
Q ss_pred hHHHHHHHHHcCCeEEecCCC------------CCCHHHHH-------hhCCCceEE-EE-eec--CChhHHHH-HHHHH
Q 018919 90 EYATARAASAAGTIMTLSSWS------------TSSVEEVA-------STGPGIRFF-QL-YVY--KDRNVVAQ-LVRRA 145 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~-------~~~~~~~~~-Ql-~~~--~~~~~~~~-~~~~~ 145 (349)
|..+|+.+.++|+..++...+ ..+++|+. +..+.++.+ -+ |++ .+++...+ ..+.+
T Consensus 43 Da~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~na~rl~ 122 (281)
T 1oy0_A 43 DYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAATRFL 122 (281)
T ss_dssp SHHHHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEECCCCcccCCHHHHHHHHHHHH
Confidence 558999999999998864321 13455532 223333332 11 111 24554444 44444
Q ss_pred HHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEE---------------E
Q 018919 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILV---------------K 210 (349)
Q Consensus 146 ~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v---------------K 210 (349)
+++|++++-|- |. .+..+.|+.+.+. ++||+. |
T Consensus 123 ~eaGa~aVklE-dg------------------------------~e~~~~I~al~~a-gIpV~gHiGLtPqsv~~~ggf~ 170 (281)
T 1oy0_A 123 KDGGAHAVKLE-GG------------------------------ERVAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGFR 170 (281)
T ss_dssp HTTCCSEEEEE-BS------------------------------GGGHHHHHHHHHH-TCCEEEEEECCC----------
T ss_pred HHhCCeEEEEC-Cc------------------------------HHHHHHHHHHHHC-CCCEEeeecCCcceecccCCeE
Confidence 55898887542 11 0114567777654 788761 1
Q ss_pred Ee-c------CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 211 GV-L------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 211 ~v-~------~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
.. . ..++|+.+.++|||.|++-. .+ .+...++.+.+ ++|+|+-|
T Consensus 171 v~grt~~a~~~i~rA~a~~eAGA~~ivlE~---------vp-~~~a~~it~~l--~iP~igIG 221 (281)
T 1oy0_A 171 VQGRGDAAEQTIADAIAVAEAGAFAVVMEM---------VP-AELATQITGKL--TIPTVGIG 221 (281)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCSEEEEES---------CC-HHHHHHHHHHC--SSCEEEES
T ss_pred EEeCcHHHHHHHHHHHHHHHcCCcEEEEec---------CC-HHHHHHHHHhC--CCCEEEeC
Confidence 11 1 12568889999999999832 22 25677888887 79999765
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.22 Score=47.77 Aligned_cols=121 Identities=16% Similarity=0.142 Sum_probs=84.6
Q ss_pred CChhHHHHHHHHHHHc---CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCc
Q 018919 133 KDRNVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLP 206 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~---G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~p 206 (349)
.+++.+.+.++++.+. |++.+-+.++.+ +++. .+.++.+|+.+ +.+
T Consensus 170 ~~~e~~~~~a~~~~~~~~~G~~~iKlKvG~~----------------------------~~~~d~~~v~avR~a~G~~~~ 221 (390)
T 3ugv_A 170 SPAEVAAEAVELKAEGQGTGFKGLKLRMGRD----------------------------DPAVDIETAEAVWDAVGRDTA 221 (390)
T ss_dssp CHHHHHHHHHHHHHTTCTTCCSEEEEECCCS----------------------------SHHHHHHHHHHHHHHHCTTSE
T ss_pred CCHHHHHHHHHHHHHhhhCCCcEEEEecCCC----------------------------CHHHHHHHHHHHHHHhCCCCE
Confidence 3556667777777778 999998877542 1122 46688899887 577
Q ss_pred EEEEEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh
Q 018919 207 ILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 207 v~vK~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~ 280 (349)
+.+..- -+.++| +.+.+.|++.|-= ...+..++.+.++++.. .+||+++..+.+..|+.++++.
T Consensus 222 l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~ 291 (390)
T 3ugv_A 222 LMVDFNQGLDMAEAMHRTRQIDDLGLEWIEE--------PVVYDNFDGYAQLRHDL--KTPLMIGENFYGPREMHQALQA 291 (390)
T ss_dssp EEEECTTCCCHHHHHHHHHHHTTSCCSEEEC--------CSCTTCHHHHHHHHHHC--SSCEEECTTCCSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCcccHHHHHHHHHhc--CCCEEeCCCcCCHHHHHHHHHc
Confidence 877642 345554 4455667776631 11223567778888776 7999999999999999999998
Q ss_pred C-CCEEEEchHH
Q 018919 281 G-ASGIFIGRPV 291 (349)
Q Consensus 281 G-A~~V~ig~~~ 291 (349)
| +|.|++--..
T Consensus 292 ~a~d~v~ik~~~ 303 (390)
T 3ugv_A 292 GACDLVMPDFMR 303 (390)
T ss_dssp TCCSEECCBHHH
T ss_pred CCCCEEEeCccc
Confidence 6 7888876544
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.059 Score=51.64 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=86.1
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++...+.++++.+.|++++.+++.+...+.. .+++. +.+ +. ..+.+. .+.++.+|+.+ +++|.+
T Consensus 136 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~----~~~~~-~gg-~~-----~~~~~~~~e~v~avr~a~G~d~~l~v 204 (392)
T 2poz_A 136 DTPDEFARAVERPLKEGYGALKFYPLAQRVGSA----LQHVT-RRS-MS-----AEAIELAYRRVKAVRDAAGPEIELMV 204 (392)
T ss_dssp CSHHHHHHHTHHHHHTTCSEEEECCCCEEETTE----EECCB-TTB-CC-----HHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccccccccc----ccccc-cCC-cc-----hhhHHHHHHHHHHHHHhcCCCCEEEE
Confidence 366777778888889999999988764211000 00000 000 00 001123 56789999887 578887
Q ss_pred EEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
..- .+.+++ +.+.+.|++.|-- ...+..++.+.++++.+ ++||++++.+.+..++.++++.| +
T Consensus 205 D~n~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~ipIa~dE~~~~~~~~~~~i~~~~~ 274 (392)
T 2poz_A 205 DLSGGLTTDETIRFCRKIGELDICFVEE--------PCDPFDNGALKVISEQI--PLPIAVGERVYTRFGFRKIFELQAC 274 (392)
T ss_dssp ECTTCSCHHHHHHHHHHHGGGCEEEEEC--------CSCTTCHHHHHHHHHHC--SSCEEECTTCCHHHHHHHHHTTTCC
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhhC--CCCEEecCCcCCHHHHHHHHHcCCC
Confidence 642 355554 4455667665421 11233577888888876 79999999999999999999976 8
Q ss_pred CEEEEc
Q 018919 283 SGIFIG 288 (349)
Q Consensus 283 ~~V~ig 288 (349)
|.|++-
T Consensus 275 d~v~ik 280 (392)
T 2poz_A 275 GIIQPD 280 (392)
T ss_dssp SEECCC
T ss_pred CEEecC
Confidence 999873
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.078 Score=48.84 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=57.1
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHH
Q 018919 217 DARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 291 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~ 291 (349)
.++.+++.|+|+|++.++.|-...-. ....+.+..+++.+++++|||+.-|=.+-.++++ |-++|||+|++-.|+
T Consensus 26 lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 105 (294)
T 2ehh_A 26 LIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPY 105 (294)
T ss_dssp HHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 34567789999999976544211111 1123455556666667899987766656666654 334899999999998
Q ss_pred HHHHhhcCHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEML 310 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l 310 (349)
++. -.++++.++++.+
T Consensus 106 y~~---~s~~~l~~~f~~v 121 (294)
T 2ehh_A 106 YNK---PTQRGLYEHFKTV 121 (294)
T ss_dssp SSC---CCHHHHHHHHHHH
T ss_pred CCC---CCHHHHHHHHHHH
Confidence 753 2345555444444
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.1 Score=48.09 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=59.0
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-...-. ....+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||+|++-.|++
T Consensus 30 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 109 (294)
T 3b4u_A 30 ARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSY 109 (294)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcC
Confidence 4557789999999976544211111 1123455555666666899987666556566654 3347999999999988
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~e 313 (349)
+. .-.++++.++++.+.+.
T Consensus 110 ~~--~~s~~~l~~~f~~va~a 128 (294)
T 3b4u_A 110 FK--NVSDDGLFAWFSAVFSK 128 (294)
T ss_dssp SC--SCCHHHHHHHHHHHHHH
T ss_pred CC--CCCHHHHHHHHHHHHHh
Confidence 63 01456666666655544
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.074 Score=50.21 Aligned_cols=90 Identities=19% Similarity=0.313 Sum_probs=56.4
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-..-.+.+..+++.+.+++|||+.-|=.+-.++++ |-++|||+|++-.|++
T Consensus 58 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y 137 (343)
T 2v9d_A 58 IDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYY 137 (343)
T ss_dssp HHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSS
T ss_pred HHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45577899999999765442110 111123455566666667899987766556666654 3348999999999987
Q ss_pred HHHhhcCHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEML 310 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l 310 (349)
+.. .++++.++++.+
T Consensus 138 ~~~---s~~~l~~~f~~V 152 (343)
T 2v9d_A 138 WKV---SEANLIRYFEQV 152 (343)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 532 345554444443
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.077 Score=52.78 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+.++.+.++|+|+|.+....|. -...++.+.++++.+ +++||++ |++.+.+++.++..+|||+|.+|
T Consensus 257 ~~~a~~~~~aG~d~v~i~~~~G~----~~~~~~~i~~i~~~~-~~~pvi~-~~v~t~~~a~~l~~aGad~I~vg 324 (514)
T 1jcn_A 257 KYRLDLLTQAGVDVIVLDSSQGN----SVYQIAMVHYIKQKY-PHLQVIG-GNVVTAAQAKNLIDAGVDGLRVG 324 (514)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCC----SHHHHHHHHHHHHHC-TTCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEeeccCCc----chhHHHHHHHHHHhC-CCCceEe-cccchHHHHHHHHHcCCCEEEEC
Confidence 47788999999999999432221 122457788888876 3688876 67999999999999999999884
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.15 Score=48.55 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=81.9
Q ss_pred ChhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 134 DRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
+++.+.+.++++.+. |+..+-+.++.+ +++. .+.++.+|+.+ +.++.+
T Consensus 151 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~----------------------------~~~~d~~~v~avR~~~g~~~~l~v 202 (372)
T 3tj4_A 151 TLEDLLAGSARAVEEDGFTRLKIKVGHD----------------------------DPNIDIARLTAVRERVDSAVRIAI 202 (372)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEEECCCS----------------------------SHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCC----------------------------CHHHHHHHHHHHHHHcCCCCcEEe
Confidence 567777777777788 999998887643 1112 46789999987 577877
Q ss_pred EEe--cCHHHHHH----HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~a~~----a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
..- -+.++|.. +.+.|++.|- + ...+..++.+.++++.. .+||+++..+.+..|+.+++..| +
T Consensus 203 Dan~~~~~~~a~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~~~ 272 (372)
T 3tj4_A 203 DGNGKWDLPTCQRFCAAAKDLDIYWFE-------E-PLWYDDVTSHARLARNT--SIPIALGEQLYTVDAFRSFIDAGAV 272 (372)
T ss_dssp ECTTCCCHHHHHHHHHHTTTSCEEEEE-------S-CSCTTCHHHHHHHHHHC--SSCEEECTTCCSHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHHHHhhcCCCEEE-------C-CCCchhHHHHHHHHhhc--CCCEEeCCCccCHHHHHHHHHcCCC
Confidence 642 35666543 3334444331 1 01123577778887776 79999999999999999999986 7
Q ss_pred CEEEEch
Q 018919 283 SGIFIGR 289 (349)
Q Consensus 283 ~~V~ig~ 289 (349)
|.|++--
T Consensus 273 d~v~~k~ 279 (372)
T 3tj4_A 273 AYVQPDV 279 (372)
T ss_dssp SEECCCT
T ss_pred CEEEeCc
Confidence 8988843
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.075 Score=49.39 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=57.1
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-....+.+..+++.+++++|||+.-|=.+-.++++ |-.+|||++++-.|++
T Consensus 35 v~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy 114 (309)
T 3fkr_A 35 VDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYH 114 (309)
T ss_dssp HHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCB
T ss_pred HHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 44567899999999665331100 111123455666666667899998755555566554 3348999999999976
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+....-.++++.++++.+.+
T Consensus 115 ~~~~~~s~~~l~~~f~~va~ 134 (309)
T 3fkr_A 115 GATFRVPEAQIFEFYARVSD 134 (309)
T ss_dssp TTTBCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHH
Confidence 21001135555555544433
|
| >3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.28 Score=45.92 Aligned_cols=143 Identities=11% Similarity=0.033 Sum_probs=90.5
Q ss_pred CCCceEEEEee--cCChhHHHHHHHHHHHc----CCC--EEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch
Q 018919 121 GPGIRFFQLYV--YKDRNVVAQLVRRAERA----GFK--AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (349)
Q Consensus 121 ~~~~~~~Ql~~--~~~~~~~~~~~~~~~~~----G~~--~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (349)
.+++..+|+.. ..|.+.+.+.++++.+. |++ -+.|.+.++.. |
T Consensus 93 v~G~VS~EV~~~ls~d~e~~i~eA~~l~~l~~~~gi~~~nv~IKIP~T~e---------------G-------------- 143 (334)
T 3hjz_A 93 ISGRVSTEVDARLSFDTEATVKKARKLINLYKNFGIEKERILIKIAATWE---------------G-------------- 143 (334)
T ss_dssp CSSCEEEECCGGGTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEECSHH---------------H--------------
T ss_pred CCCCEEEEEcCCccCCHHHHHHHHHHHHHHhhhhCCCCCcEEEEeCCCHH---------------H--------------
Confidence 45777788764 24666666666665543 544 45665533200 0
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEe-c---------CCCCCCC-CchhhHHHHHHHHHHh---cC
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS-N---------HGARQLD-YVPATIMALEEVVKAT---QG 258 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~-~---------~gg~~~~-~~~~~~~~l~~i~~~~---~~ 258 (349)
.+.++.+.+. ++++-+-.+.+.+.+..|.++|+..|... | .|..... ...+....+.++.+.. +.
T Consensus 144 l~A~~~L~~~-GI~~N~TliFS~~Qa~~aa~AGa~~ISPFVgRi~D~~~~~~g~~~~~~~~d~Gv~~v~~i~~~y~~~g~ 222 (334)
T 3hjz_A 144 IKAAEILEKE-GIKCNLTLLFNFCQAVTCANANITLISPFVGRILDWHKAKTGKTSFIGAEDPGVISVTQIYKYFKEKGF 222 (334)
T ss_dssp HHHHHHHHHT-TCCEEEESCCSHHHHHHHHHTTCSEECCBHHHHHHHHHHHHCCCCCCGGGCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHcCCcEEEeeccHHHHHhhhccCCcccccccCcHHHHHHHHHHHHHHcCC
Confidence 3456666544 89999988999999999999999888542 1 1211110 0112345555555443 33
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 259 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 259 ~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
+..|++. .+|+..++.. .+|||.+-|.-.++..+.
T Consensus 223 ~T~vl~A-SfRn~~~v~~--laG~d~~Tipp~ll~~L~ 257 (334)
T 3hjz_A 223 KTEVMGA-SFRNLDEIKE--LAGCDLLTIAPKFLEELK 257 (334)
T ss_dssp CCEEEEB-CCSSHHHHHH--TTTCSEEEECHHHHHHHH
T ss_pred CCEEEEe-cCCCHHHHHH--HhCCCEEEcCHHHHHHHH
Confidence 5556555 5999999986 579999999988887664
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.081 Score=48.85 Aligned_cols=93 Identities=16% Similarity=0.265 Sum_probs=57.9
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHH
Q 018919 217 DARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 291 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~ 291 (349)
.++.+++.|+|+|++.++.|-... +-....+.+..+++.+++++|||+.-|=.+-.++++ |-++|||+|++-.|+
T Consensus 26 lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 105 (297)
T 2rfg_A 26 LVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGY 105 (297)
T ss_dssp HHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCT
T ss_pred HHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 355678899999998665332110 111123455556666667899887666555566654 334899999999998
Q ss_pred HHHHhhcCHHHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l~~ 312 (349)
++. -.++++.++++.+.+
T Consensus 106 y~~---~s~~~l~~~f~~va~ 123 (297)
T 2rfg_A 106 YNR---PSQEGLYQHFKMVHD 123 (297)
T ss_dssp TTC---CCHHHHHHHHHHHHH
T ss_pred CCC---CCHHHHHHHHHHHHH
Confidence 763 245555555554433
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.078 Score=48.80 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=55.8
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH----HhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal----~~GA~~V~ig~~~l 292 (349)
++.+.+.|+|+|++.++.|-...-. ....+.+..+++.+++++|||+.=|=.+-.++++.. ++|||++++-.|++
T Consensus 28 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 107 (292)
T 2ojp_A 28 IDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY 107 (292)
T ss_dssp HHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 4456788999999976544211111 112345555666666789998776666666666533 37999999999987
Q ss_pred HHHhhcCHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEM 309 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~ 309 (349)
+.. .++++.++++.
T Consensus 108 ~~~---s~~~l~~~f~~ 121 (292)
T 2ojp_A 108 NRP---SQEGLYQHFKA 121 (292)
T ss_dssp SCC---CHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHH
Confidence 531 34554444443
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.14 Score=43.92 Aligned_cols=121 Identities=15% Similarity=0.185 Sum_probs=73.4
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEE-EeecCChhHHHHHHHHHHHcC
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ-LYVYKDRNVVAQLVRRAERAG 149 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Q-l~~~~~~~~~~~~~~~~~~~G 149 (349)
..|+++-|=-..++.....-..+. ...+.-+++|+... .+.. ++.. +..-+| +|. -|.......++.+....
T Consensus 56 gK~vivh~DlI~GLs~d~~ai~fL---~~~~pdGIIsTk~~-~i~~-Akk~-GL~tIqR~Fl-iDs~al~~~~~~I~~~k 128 (188)
T 1vkf_A 56 GKTVFVDMDFVNGLGEGEEAILFV---KKAGADGIITIKPK-NYVV-AKKN-GIPAVLRFFA-LDSKAVERGIEQIETLG 128 (188)
T ss_dssp TCEEEEEGGGEETCCSSHHHHHHH---HHHTCSEEEESCHH-HHHH-HHHT-TCCEEEEEEC-CSHHHHHHHHHHHHHHT
T ss_pred CCeEEEecCcccccCCCHHHHHHH---HhcCCCEEEcCcHH-HHHH-HHHc-CCEEeeEEEE-EEeHHHhhhhhhccccC
Confidence 467777773334443332222333 77777777776532 1111 1111 333333 344 46555566777777888
Q ss_pred CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCE
Q 018919 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAG 228 (349)
Q Consensus 150 ~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~ 228 (349)
.|++++ +..++ .-+.++++ +++|+++.| +.+.|+++. +++||++
T Consensus 129 PD~iEi-LPg~v------------------------------~p~~I~~v---~~~PiIaGGlI~t~edv~~-l~aGA~a 173 (188)
T 1vkf_A 129 VDVVEV-LPGAV------------------------------APKVARKI---PGRTVIAAGLVETEEEARE-ILKHVSA 173 (188)
T ss_dssp CSEEEE-ESGGG------------------------------HHHHHTTS---TTSEEEEESCCCSHHHHHH-HTTTSSE
T ss_pred CCeEee-cCCCc------------------------------hHHHHHHh---cCCCEEEECCcCCHHHHHH-HHCCCeE
Confidence 888876 21110 02456666 689999988 589999999 9999999
Q ss_pred EEEec
Q 018919 229 IIVSN 233 (349)
Q Consensus 229 I~v~~ 233 (349)
|+.|+
T Consensus 174 IsTs~ 178 (188)
T 1vkf_A 174 ISTSS 178 (188)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99876
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.12 Score=49.59 Aligned_cols=116 Identities=13% Similarity=0.081 Sum_probs=84.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK 210 (349)
+++.+.+.++++.+.|++.+-+.++. +++. .+.++.+|+.+ +.++.+.
T Consensus 155 ~~e~~~~~a~~~~~~G~~~iKlK~g~-----------------------------~~~~d~~~v~avR~a~g~~~~l~vD 205 (392)
T 3ddm_A 155 NPENPEDVVARKAAEGYRAFKLKVGF-----------------------------DDARDVRNALHVRELLGAATPLMAD 205 (392)
T ss_dssp CSSSHHHHHHHHHHHTCCCEEEECSS-----------------------------CHHHHHHHHHHHHHHHCSSSCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC-----------------------------CHHHHHHHHHHHHHhcCCCceEEEe
Confidence 35667778888888999999887753 1112 46789999987 5788876
Q ss_pred Ee--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhh-HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 211 GV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 211 ~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
.- -+.++| +.+.+.|++.|-= ...+.. ++.+.++++.. .+||+++..+.+..|+.++++.| +
T Consensus 206 aN~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~a~ 275 (392)
T 3ddm_A 206 ANQGWDLPRARQMAQRLGPAQLDWLEE--------PLRADRPAAEWAELAQAA--PMPLAGGENIAGVAAFETALAARSL 275 (392)
T ss_dssp CTTCCCHHHHHHHHHHHGGGCCSEEEC--------CSCTTSCHHHHHHHHHHC--SSCEEECTTCCSHHHHHHHHHHTCE
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEC--------CCCccchHHHHHHHHHhc--CCCEEeCCCCCCHHHHHHHHHcCCC
Confidence 42 345554 5566778877731 111224 67788888776 79999999999999999999976 7
Q ss_pred CEEEEc
Q 018919 283 SGIFIG 288 (349)
Q Consensus 283 ~~V~ig 288 (349)
|.|++-
T Consensus 276 d~v~~k 281 (392)
T 3ddm_A 276 RVMQPD 281 (392)
T ss_dssp EEECCC
T ss_pred CEEEeC
Confidence 888874
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.21 Score=47.46 Aligned_cols=118 Identities=14% Similarity=0.203 Sum_probs=84.1
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|++.+-+.++.. ++. .+.++.+|+.+ +.++.+
T Consensus 139 ~~~e~~~~~a~~~~~~G~~~~K~KvG~~-----------------------------~~~d~~~v~avR~~~g~~~~l~v 189 (368)
T 3q45_A 139 DEPHKMAADAVQIKKNGFEIIKVKVGGS-----------------------------KELDVERIRMIREAAGDSITLRI 189 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCSC-----------------------------HHHHHHHHHHHHHHHCSSSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecCC-----------------------------HHHHHHHHHHHHHHhCCCCeEEE
Confidence 4677777888888889999998877531 112 46788999887 577877
Q ss_pred EEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
..- -+.++| +.+.+.|++.|-= ...+..++.+.++++.. .+||+++..+.+..|+.+++..| +
T Consensus 190 DaN~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~~~~~~~ 259 (368)
T 3q45_A 190 DANQGWSVETAIETLTLLEPYNIQHCEE--------PVSRNLYTALPKIRQAC--RIPIMADESCCNSFDAERLIQIQAC 259 (368)
T ss_dssp ECTTCBCHHHHHHHHHHHGGGCCSCEEC--------CBCGGGGGGHHHHHHTC--SSCEEESTTCCSHHHHHHHHHTTCC
T ss_pred ECCCCCChHHHHHHHHHHhhcCCCEEEC--------CCChhHHHHHHHHHhhC--CCCEEEcCCcCCHHHHHHHHHcCCC
Confidence 632 345554 4566678777631 11223456667777765 79999999999999999999975 7
Q ss_pred CEEEEch
Q 018919 283 SGIFIGR 289 (349)
Q Consensus 283 ~~V~ig~ 289 (349)
|.|++--
T Consensus 260 d~v~~k~ 266 (368)
T 3q45_A 260 DSFNLKL 266 (368)
T ss_dssp SEEEECT
T ss_pred CeEEech
Confidence 9998864
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.1 Score=50.14 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=86.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCC-CCCCchhHHhhhhcCCCCcCcccccCCCCCC----ch-HHHHHHHHHhc--CC
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDT-PRLGRREADIKNRFTLPPFLTLKNFQGLDLG----KM-DEDVKWLQTIT--KL 205 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~-p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~----~~-~~~i~~i~~~~--~~ 205 (349)
+++...+.++++.+.|++++.+++.. ...|.. +..|.+ + .++ +. .+.++.+|+.+ ++
T Consensus 152 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~-------~~s~~~----~----~~~~~~~~~~~e~v~avR~a~G~d~ 216 (407)
T 2o56_A 152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNW-------NQQNLN----G----PLTDKILRLGYDRMAAIRDAVGPDV 216 (407)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCB-------SCSCCC----S----SCCHHHHHHHHHHHHHHHHHHCTTS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcccccCCcCcc-------ccCccc----C----CCchhHHHHHHHHHHHHHHhcCCCC
Confidence 66777778888889999999987521 000110 111110 0 122 23 46688999876 57
Q ss_pred cEEEEEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 018919 206 PILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279 (349)
Q Consensus 206 pv~vK~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~ 279 (349)
+|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||++++.+.+..++.++++
T Consensus 217 ~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~ 286 (407)
T 2o56_A 217 DIIAEMHAFTDTTSAIQFGRMIEELGIFYYEE--------PVMPLNPAQMKQVADKV--NIPLAAGERIYWRWGYRPFLE 286 (407)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHGGGCCSCEEC--------SSCSSSHHHHHHHHHHC--CSCEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCEEeC--------CCChhhHHHHHHHHHhC--CCCEEeCCCcCCHHHHHHHHH
Confidence 8887642 34544 45566778876631 01223577888888877 799999999999999999999
Q ss_pred hC-CCEEEEc
Q 018919 280 LG-ASGIFIG 288 (349)
Q Consensus 280 ~G-A~~V~ig 288 (349)
.| +|.|++-
T Consensus 287 ~~~~d~v~ik 296 (407)
T 2o56_A 287 NGSLSVIQPD 296 (407)
T ss_dssp TTCCSEECCC
T ss_pred cCCCCEEecC
Confidence 87 7999884
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=94.87 E-value=2.2 Score=38.80 Aligned_cols=173 Identities=15% Similarity=0.174 Sum_probs=101.5
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------hCCCceEEEEeecCChhHHHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------TGPGIRFFQLYVYKDRNVVAQ 140 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~~~~~~~~Ql~~~~~~~~~~~ 140 (349)
|.++.|+. .+-.+.++-..+++-.-+.|+.+++ ++ +...+.+|-.+ ...+ .+...-. .+-..+.+
T Consensus 5 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-vi~Gvg~-~~t~~ai~ 81 (286)
T 2r91_A 5 APVITTFR-GGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR-VIVQVAS-LNADEAIA 81 (286)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS-EEEECCC-SSHHHHHH
T ss_pred EeEecCcC-CCccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-EEEeeCC-CCHHHHHH
Confidence 44566665 4434445555777777788987654 33 23456665322 2234 4455432 45566778
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCC-CCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe------
Q 018919 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV------ 212 (349)
Q Consensus 141 ~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~-p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v------ 212 (349)
+++.+++.|++++.+. .|.. .- | +++ ..+..+.+.+.+++||++=.+
T Consensus 82 la~~A~~~Gadavlv~--~P~y-----------~~~~------------s~~~l~~~f~~va~a~~lPiilYn~P~~tg~ 136 (286)
T 2r91_A 82 LAKYAESRGAEAVASL--PPYY-----------FPRL------------SERQIAKYFRDLCSAVSIPVFLYNYPAAVGR 136 (286)
T ss_dssp HHHHHHHTTCSEEEEC--CSCS-----------STTC------------CHHHHHHHHHHHHHHCSSCEEEEECHHHHSS
T ss_pred HHHHHHhcCCCEEEEc--CCcC-----------CCCC------------CHHHHHHHHHHHHHhcCCCEEEEeChhhcCC
Confidence 8999999999998763 2321 10 0 111 256677888888999998664
Q ss_pred -cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 213 -LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 213 -~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
.+++...+ --.+-+|.-+. .++..+.++.+ .++++.|+ +|- ..-++.++.+||+++.-+.+
T Consensus 137 ~l~~~~~~~--~pnivgiKds~----------gd~~~~~~~~~-~~~~f~v~-~G~---d~~~~~~l~~G~~G~is~~a 198 (286)
T 2r91_A 137 DVDARAAKE--LGCIRGVKDTN----------ESLAHTLAYKR-YLPQARVY-NGS---DSLVFASFAVRLDGVVASSA 198 (286)
T ss_dssp CCCHHHHHH--HSCEEEEEECC----------SCHHHHHHHHH-HCTTSEEE-ECC---GGGHHHHHHTTCSEECCGGG
T ss_pred CCCHHHHHh--cCCEEEEEeCC----------CCHHHHHHHHh-cCCCEEEE-Ecc---HHHHHHHHHcCCCEEEecHH
Confidence 35566555 22233333321 12444555555 54466654 442 24467889999999998874
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.1 Score=50.32 Aligned_cols=136 Identities=17% Similarity=0.103 Sum_probs=86.1
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCC-CCCCchhHHhhhhcCCCCcCcccccCCCC---CCch-HHHHHHHHHhc--CCc
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDT-PRLGRREADIKNRFTLPPFLTLKNFQGLD---LGKM-DEDVKWLQTIT--KLP 206 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~-p~~g~r~~d~~~~~~~p~~~~~~~~~~~~---~~~~-~~~i~~i~~~~--~~p 206 (349)
+++...+.++++.+.|++++.+++.. ...|.. +..| .+.....+.. +.+. .+.++.+|+.+ +++
T Consensus 150 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~-------~~~~--~~~~~~GG~~~~~~~~~~~e~v~avR~a~G~d~~ 220 (410)
T 2gl5_A 150 TPEEYAEAARAALDDGYDAIKVDPLEIDRNGDD-------CVFQ--NRNRNYSGLLLADQLKMGEARIAAMREAMGDDAD 220 (410)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCB-------TTTS--SCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCcccc-------cccc--cccccccCccchhHHHHHHHHHHHHHHhcCCCCE
Confidence 66777788888889999999987620 000110 0000 0000011111 1123 56789999887 578
Q ss_pred EEEEEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh
Q 018919 207 ILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 207 v~vK~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~ 280 (349)
|.+..- .+++++ +.+.+.|++.|-- ...+..++.+.++++.+ ++||++++.+.+..++.++++.
T Consensus 221 l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~ 290 (410)
T 2gl5_A 221 IIVEIHSLLGTNSAIQFAKAIEKYRIFLYEE--------PIHPLNSDNMQKVSRST--TIPIATGERSYTRWGYRELLEK 290 (410)
T ss_dssp EEEECTTCSCHHHHHHHHHHHGGGCEEEEEC--------SSCSSCHHHHHHHHHHC--SSCEEECTTCCTTHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCeEEC--------CCChhhHHHHHHHHhhC--CCCEEecCCcCCHHHHHHHHHc
Confidence 887642 355554 4455667665421 01223577888888876 7999999999999999999998
Q ss_pred C-CCEEEEc
Q 018919 281 G-ASGIFIG 288 (349)
Q Consensus 281 G-A~~V~ig 288 (349)
| +|.|++-
T Consensus 291 ~~~d~v~ik 299 (410)
T 2gl5_A 291 QSIAVAQPD 299 (410)
T ss_dssp TCCSEECCC
T ss_pred CCCCEEecC
Confidence 6 7999874
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.062 Score=48.49 Aligned_cols=40 Identities=30% Similarity=0.462 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++++|+.+++|+++.. +.++++++.+.+ +||+++|.+
T Consensus 188 ~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGS 228 (252)
T 3tha_A 188 QDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK-VADGVIVGT 228 (252)
T ss_dssp HHHHHHHHTTCCSCEEEESSCCSHHHHHHHTT-TSSEEEECH
T ss_pred HHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh-cCCEEEECH
Confidence 4569999998899999876 579999998876 699999953
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.14 Score=48.60 Aligned_cols=70 Identities=13% Similarity=-0.010 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT 214 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~ 214 (349)
+...++++.+++.|++.|.++...-. . .+.+ ++.++++|+.+++||+.-+-.+
T Consensus 250 ~~~~~~a~~l~~~G~d~i~v~~~~~~--------------~------------~~~~~~~~~~~i~~~~~iPvi~~Ggi~ 303 (365)
T 2gou_A 250 LTYTAAAALLNKHRIVYLHIAEVDWD--------------D------------APDTPVSFKRALREAYQGVLIYAGRYN 303 (365)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCBTT--------------B------------CCCCCHHHHHHHHHHCCSEEEEESSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcC--------------C------------CCCccHHHHHHHHHHCCCcEEEeCCCC
Confidence 44567889999999999987642100 0 0112 6778999999999998766559
Q ss_pred HHHHHHHHHcC-CCEEEE
Q 018919 215 AEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 215 ~~~a~~a~~~G-~d~I~v 231 (349)
+++|+.+++.| ||+|.+
T Consensus 304 ~~~a~~~l~~g~aD~V~i 321 (365)
T 2gou_A 304 AEKAEQAINDGLADMIGF 321 (365)
T ss_dssp HHHHHHHHHTTSCSEEEC
T ss_pred HHHHHHHHHCCCcceehh
Confidence 99999999998 999987
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.77 E-value=2.5 Score=39.02 Aligned_cols=181 Identities=14% Similarity=0.066 Sum_probs=103.8
Q ss_pred cceeeccccc-ccccCChhhHHHHHHHHHcCCeEEec-----CCCCCCHHHHHh-------h-CC-CceEEEEeecCChh
Q 018919 72 MPIMIAPTAM-QKMAHPEGEYATARAASAAGTIMTLS-----SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRN 136 (349)
Q Consensus 72 ~Pi~iApm~~-~~l~~~~~~~~la~aa~~~G~~~~~~-----~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~ 136 (349)
.|.++.|+.- .+-.+.++-..+++-.-+.|+.+++- ++...+.+|..+ . .. -+.+...- . +..
T Consensus 16 ~~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg-~-~t~ 93 (316)
T 3e96_A 16 SGIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIG-Y-ATS 93 (316)
T ss_dssp EECCCCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-S-SHH
T ss_pred EEeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeC-c-CHH
Confidence 3666777754 33334455557777788889877652 233456665322 1 22 34566653 3 666
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe---
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV--- 212 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v--- 212 (349)
.+.++++.+++.|++++.+. .|.. .-| +.+ ..+..+.+.+.+++||++=.+
T Consensus 94 ~ai~la~~A~~~Gadavlv~--~P~y-----------~~~------------s~~~l~~~f~~va~a~~lPiilYn~g~~ 148 (316)
T 3e96_A 94 TAIELGNAAKAAGADAVMIH--MPIH-----------PYV------------TAGGVYAYFRDIIEALDFPSLVYFKDPE 148 (316)
T ss_dssp HHHHHHHHHHHHTCSEEEEC--CCCC-----------SCC------------CHHHHHHHHHHHHHHHTSCEEEEECCTT
T ss_pred HHHHHHHHHHhcCCCEEEEc--CCCC-----------CCC------------CHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 77888999999999998763 3321 001 111 256678888888999998663
Q ss_pred cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 213 LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 213 ~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
.+++...++.+.. +-+|.-+. .++..+.++.+..++ ++.-+.+|. .. .-+..++.+||+++.-+.+
T Consensus 149 l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~~f~~v~~G~-d~-~~~~~~l~~G~~G~is~~a 216 (316)
T 3e96_A 149 ISDRVLVDLAPLQNLVGVKYAI----------NDLPRFAKVVRSIPEEHQIAWICGT-AE-KWAPFFWHAGAKGFTSGLV 216 (316)
T ss_dssp SCTHHHHHHTTCTTEEEEEECC----------CCHHHHHHHHTTSCGGGCCEEEETT-CT-TTHHHHHHHTCCEEEESGG
T ss_pred CCHHHHHHHHcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCCceEEEeCC-hH-HHHHHHHHCCCCEEEechh
Confidence 5667777766432 22332221 123445555554432 343133442 10 1133467899999999885
Q ss_pred H
Q 018919 291 V 291 (349)
Q Consensus 291 ~ 291 (349)
-
T Consensus 217 n 217 (316)
T 3e96_A 217 N 217 (316)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.7 Score=43.85 Aligned_cols=121 Identities=12% Similarity=0.029 Sum_probs=84.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++...+.+++..+.|+..+-+.++.. +.+. .+.++.+|+.+ ++++.+
T Consensus 145 ~~~~~~~~~a~~~~~~G~~~~K~Kvg~~----------------------------~~~~d~~~v~avR~~~g~~~~l~v 196 (377)
T 3my9_A 145 PDFDADLERMRAMVPAGHTVFKMKTGVK----------------------------PHAEELRILETMRGEFGERIDLRL 196 (377)
T ss_dssp SSHHHHHHHHHHHTTTTCCEEEEECSSS----------------------------CHHHHHHHHHHHHHHHGGGSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccCCC----------------------------cHHHHHHHHHHHHHHhCCCCeEEE
Confidence 3556666666666677999998877531 1112 46688888886 578887
Q ss_pred EEe--cCH----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
..- -+. +.++.+.+.|++.|-= ...+..++.+.++++.. .+||+++.-+.+..|+.++++.| +
T Consensus 197 Dan~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~ipIa~dE~~~~~~~~~~~i~~~~~ 266 (377)
T 3my9_A 197 DFNQALTPFGAMKILRDVDAFRPTFIEQ--------PVPRRHLDAMAGFAAAL--DTPILADESCFDAVDLMEVVRRQAA 266 (377)
T ss_dssp ECTTCCCTTTHHHHHHHHHTTCCSCEEC--------CSCTTCHHHHHHHHHHC--SSCEEESTTCSSHHHHHHHHHHTCC
T ss_pred eCCCCcCHHHHHHHHHHHhhcCCCEEEC--------CCCccCHHHHHHHHHhC--CCCEEECCccCCHHHHHHHHHcCCC
Confidence 642 122 4456677788887631 11223577788888776 79999999999999999999976 8
Q ss_pred CEEEEchHH
Q 018919 283 SGIFIGRPV 291 (349)
Q Consensus 283 ~~V~ig~~~ 291 (349)
|.|++--..
T Consensus 267 d~v~~k~~~ 275 (377)
T 3my9_A 267 DAISVKIMK 275 (377)
T ss_dssp SEEECCHHH
T ss_pred CEEEecccc
Confidence 899886543
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.33 Score=42.29 Aligned_cols=110 Identities=19% Similarity=0.186 Sum_probs=67.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCC--CchHHHHHHHHHhcCCcEEEEEecCH
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL--GKMDEDVKWLQTITKLPILVKGVLTA 215 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~pv~vK~v~~~ 215 (349)
..+.++.+.+.|++.+.+...... +.. .. ....+.++.+.+.+++|+++.
T Consensus 33 ~~~~~~~~~~~G~~~i~l~~~~~~--------------~~~---------~~~~~~~~~~l~~~~~~~~v~v~v~----- 84 (227)
T 2tps_A 33 PVTVVQKALKGGATLYQFREKGGD--------------ALT---------GEARIKFAEKAQAACREAGVPFIVN----- 84 (227)
T ss_dssp HHHHHHHHHHHTCSEEEECCCSTT--------------CCC---------HHHHHHHHHHHHHHHHHHTCCEEEE-----
T ss_pred HHHHHHHHHHCCCCEEEEecCCCC--------------HhH---------HHHHHHHHHHHHHHHHHcCCeEEEc-----
Confidence 567788889999999876532110 000 00 011344555555668999874
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+.++.+.++|+|+|.+... + . . +.++++.++. .++. -.+.+.+++.++...|||.|.+|.
T Consensus 85 ~~~~~a~~~gad~v~l~~~-----~--~-~---~~~~~~~~g~--~~~~-~s~~t~~e~~~a~~~g~d~v~~~~ 144 (227)
T 2tps_A 85 DDVELALNLKADGIHIGQE-----D--A-N---AKEVRAAIGD--MILG-VSAHTMSEVKQAEEDGADYVGLGP 144 (227)
T ss_dssp SCHHHHHHHTCSEEEECTT-----S--S-C---HHHHHHHHTT--SEEE-EEECSHHHHHHHHHHTCSEEEECC
T ss_pred CHHHHHHHcCCCEEEECCC-----c--c-C---HHHHHHhcCC--cEEE-EecCCHHHHHHHHhCCCCEEEECC
Confidence 3456788999999987211 1 1 1 3344444422 2222 225889998888899999999865
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.076 Score=49.25 Aligned_cols=89 Identities=19% Similarity=0.345 Sum_probs=55.8
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-....+.+..+++.+++++|||+.=|=.+-.++++ |-++|||+|++-.|++
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 118 (306)
T 1o5k_A 39 VRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY 118 (306)
T ss_dssp HHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45678899999999665432111 111123455556666667899987666656666654 3348999999999987
Q ss_pred HHHhhcCHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEM 309 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~ 309 (349)
+. -.++++.++++.
T Consensus 119 ~~---~s~~~l~~~f~~ 132 (306)
T 1o5k_A 119 NK---PTQEGLYQHYKY 132 (306)
T ss_dssp SC---CCHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHH
Confidence 53 134554444443
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.11 Score=47.93 Aligned_cols=109 Identities=16% Similarity=0.040 Sum_probs=63.2
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcC-CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCC-CCCchHHHHHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-DLGKMDEDVKWLQ 200 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G-~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~-~~~~~~~~i~~i~ 200 (349)
.+.++.+....+.+...+.++.++++| +++|.++-.. ..+......+.....+.........+. ..+..++.+++++
T Consensus 161 ~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~-~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~ 239 (314)
T 2e6f_A 161 LPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSV-GNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFY 239 (314)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCCE-EEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCCC-CccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHH
Confidence 457777766556666777889999999 9998764211 000000000000000000000000000 0011168899999
Q ss_pred Hhc-CCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 201 TIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 201 ~~~-~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+.+ ++||+.-+ +.+++++.+++.+|||+|.+.
T Consensus 240 ~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig 273 (314)
T 2e6f_A 240 RRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVG 273 (314)
T ss_dssp HHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEEC
T ss_pred HhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 998 89987544 688999999999999999884
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.092 Score=48.73 Aligned_cols=94 Identities=10% Similarity=0.074 Sum_probs=57.7
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-....+.+..+++.+++++|||+.-|=.+-.++++ +-++|||++++-.|++
T Consensus 41 v~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 120 (307)
T 3s5o_A 41 LHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCY 120 (307)
T ss_dssp HHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCT
T ss_pred HHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 34567899999999765441110 111123455556666667899988666556666653 3458999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+.. .-.++++.++++.+.+
T Consensus 121 ~~~-~~s~~~l~~~f~~ia~ 139 (307)
T 3s5o_A 121 YRG-RMSSAALIHHYTKVAD 139 (307)
T ss_dssp TGG-GCCHHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHh
Confidence 631 0135566555555433
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.089 Score=48.64 Aligned_cols=91 Identities=14% Similarity=0.241 Sum_probs=58.6
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 291 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~ 291 (349)
++.+++.|+|+|++.++.|-... +-....+.+..+++.+++ ++|||+.-|=.+-.++++ +-.+|||+|++-.|+
T Consensus 34 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 113 (301)
T 3m5v_A 34 IKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPY 113 (301)
T ss_dssp HHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 45677899999998665442110 111223556666677777 899998766666677664 334899999999998
Q ss_pred HHHHhhcCHHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEMLR 311 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l~ 311 (349)
++. -.++++.++++.+.
T Consensus 114 y~~---~s~~~l~~~f~~va 130 (301)
T 3m5v_A 114 YNK---PTQQGLYEHYKAIA 130 (301)
T ss_dssp SSC---CCHHHHHHHHHHHH
T ss_pred CCC---CCHHHHHHHHHHHH
Confidence 763 23455555444443
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.1 Score=51.60 Aligned_cols=232 Identities=20% Similarity=0.254 Sum_probs=110.5
Q ss_pred hhccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||+|.|+|..- .+..++|+++++. ++.+..|++.++|...+ +..+|.+..+.|...++. ...++++.+
T Consensus 17 ~~~~dvll~p~~s~~~p~~v~~~~eLt~~~~l~iP~is~~m~~v~------~~~lA~al~~~GglG~i~--~~~~~e~~~ 88 (494)
T 1vrd_A 17 LTFDDVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTVT------EAALAKALAREGGIGIIH--KNLTPDEQA 88 (494)
T ss_dssp CCGGGEEECCCCCCCCGGGSCCCEESSSSCEESSSEEECCCTTTC------SHHHHHHHHTTTCEEEEC--SSSCHHHHH
T ss_pred cccccEEeccccccCCCCceEEEehhhCCCccCceeEecchHHHh------HHHHHHHHHHcCCceEEe--cCCChHHHH
Confidence 4799999998754 2445899999985 57888999999997643 457888888888877664 234555532
Q ss_pred h----hC--CCceEEEEeecCCh-hHHHHHHHHHHHcCCCEEEEecCC--CCCC-chhHHhhh----------hcC----
Q 018919 119 S----TG--PGIRFFQLYVYKDR-NVVAQLVRRAERAGFKAIALTVDT--PRLG-RREADIKN----------RFT---- 174 (349)
Q Consensus 119 ~----~~--~~~~~~Ql~~~~~~-~~~~~~~~~~~~~G~~~i~i~~d~--p~~g-~r~~d~~~----------~~~---- 174 (349)
+ .. .....-+... -++ ....+.++.+.+.+...+.+ +|. -..| ...+|++. -+.
T Consensus 89 ~~v~~v~~~~~iM~~~~~~-v~~~~tv~ea~~~m~~~~~~~~pV-vd~~~~lvGivt~~Dl~~~~~~~~~v~~im~~~~~ 166 (494)
T 1vrd_A 89 RQVSIVKKTENGIIYDPIT-VTPDMTVKEAIDLMAEYKIGGLPV-VDEEGRLVGLLTNRDVRFEKNLSKKIKDLMTPREK 166 (494)
T ss_dssp HHHHHHHTC-----------------------------------------------------------------------
T ss_pred HHHHhhhhHhhcCccCCeE-ECCCCCHHHHHHHHHHcCceEEEE-EcCCCEEEEEEEHHHHHhhcCCCCcHHHHhCCCCC
Confidence 2 11 1100001111 111 12334444444444444322 110 0000 00111110 000
Q ss_pred ---CCCcCcccccCC-----------CCCC--ch------HHHHHHHHHh-----cCCcEEEEE-ecC----HHHHHHHH
Q 018919 175 ---LPPFLTLKNFQG-----------LDLG--KM------DEDVKWLQTI-----TKLPILVKG-VLT----AEDARIAV 222 (349)
Q Consensus 175 ---~p~~~~~~~~~~-----------~~~~--~~------~~~i~~i~~~-----~~~pv~vK~-v~~----~~~a~~a~ 222 (349)
+++......... ..|. .+ .+.++.+... .+.++.+.. +.. .+.++.+.
T Consensus 167 ~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~~~~~D~~~~l~vga~ig~~~~~~~~a~~l~ 246 (494)
T 1vrd_A 167 LIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHPNAARDEKGRLLVGAAVGTSPETMERVEKLV 246 (494)
T ss_dssp ------------------------------------------CHHHHTCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHH
T ss_pred CeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccccccccchhhhccccccCcCHhHHHHHHHHH
Confidence 000000000000 0000 00 0112222211 111222222 222 57788999
Q ss_pred HcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 223 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 223 ~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
++|+|.|.++...| .....++.+.++++.++ ++||++ |++.+.+++.++..+|||+|.+|
T Consensus 247 ~aGvd~v~i~~~~G----~~~~~~e~i~~i~~~~p-~~pvi~-g~~~t~e~a~~l~~~G~d~I~v~ 306 (494)
T 1vrd_A 247 KAGVDVIVIDTAHG----HSRRVIETLEMIKADYP-DLPVVA-GNVATPEGTEALIKAGADAVKVG 306 (494)
T ss_dssp HTTCSEEEECCSCC----SSHHHHHHHHHHHHHCT-TSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HhCCCEEEEEecCC----chHHHHHHHHHHHHHCC-CceEEe-CCcCCHHHHHHHHHcCCCEEEEc
Confidence 99999999954322 11335778888888764 588887 67899999999999999999994
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.18 Score=47.86 Aligned_cols=77 Identities=19% Similarity=0.135 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV- 212 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v- 212 (349)
.+...++++.+++.|++.|.++....... ...| ..+.+ ++.++++|+.+++||++-+-
T Consensus 245 ~~~~~~la~~L~~~Gvd~i~vs~g~~~~~---------~~~~-----------~~~~~~~~~~~~ir~~~~iPVi~~GgI 304 (363)
T 3l5l_A 245 LEESIELARRFKAGGLDLLSVSVGFTIPD---------TNIP-----------WGPAFMGPIAERVRREAKLPVTSAWGF 304 (363)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCCSSC---------CCCC-----------CCTTTTHHHHHHHHHHHTCCEEECSST
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccc---------cccC-----------CCcchhHHHHHHHHHHcCCcEEEeCCC
Confidence 34566788899999999998876431100 0001 01223 77899999999999987664
Q ss_pred cCHHHHHHHHHcC-CCEEEE
Q 018919 213 LTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 213 ~~~~~a~~a~~~G-~d~I~v 231 (349)
.++++|+.+++.| +|.|.+
T Consensus 305 ~s~e~a~~~l~~G~aD~V~i 324 (363)
T 3l5l_A 305 GTPQLAEAALQANQLDLVSV 324 (363)
T ss_dssp TSHHHHHHHHHTTSCSEEEC
T ss_pred CCHHHHHHHHHCCCccEEEe
Confidence 5899999999999 999977
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.052 Score=50.65 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=60.1
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-..-.+.+..+++.+++++|||+.-|- +-.++++ +-.+|||+|++-.|++
T Consensus 39 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y 117 (316)
T 3e96_A 39 VDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIH 117 (316)
T ss_dssp HHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCC
T ss_pred HHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 34567899999998655331110 1111234566666667678999988774 7777765 3458999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~e 313 (349)
+. -.++++.++++.+.+.
T Consensus 118 ~~---~s~~~l~~~f~~va~a 135 (316)
T 3e96_A 118 PY---VTAGGVYAYFRDIIEA 135 (316)
T ss_dssp SC---CCHHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHHh
Confidence 42 2466666666666554
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=94.63 E-value=1.3 Score=42.39 Aligned_cols=117 Identities=14% Similarity=0.099 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEEEEe
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILVKGV 212 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~v 212 (349)
++.+.+.++++.+.|++++-+.++.. ...+.++.+|+.+ ++++.+..-
T Consensus 164 ~e~~~~~a~~~~~~G~~~iKlKv~~~------------------------------~d~~~v~avR~a~G~~~~L~vDaN 213 (400)
T 3mwc_A 164 IETLIHQVEESLQEGYRRIKIKIKPG------------------------------WDVEPLQETRRAVGDHFPLWTDAN 213 (400)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEECBTT------------------------------BSHHHHHHHHHHHCTTSCEEEECT
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCcc------------------------------hHHHHHHHHHHhcCCCCEEEEeCC
Confidence 67777788888888999998877310 0046788899887 578887632
Q ss_pred --cC---HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEE
Q 018919 213 --LT---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIF 286 (349)
Q Consensus 213 --~~---~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ 286 (349)
-+ .+.++.+.+.|++.|- | ...+..++.+.++++.. .+||+++.-+.+..|+.++++.| +|.|+
T Consensus 214 ~~w~~~~~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~~~~~~~d~v~ 283 (400)
T 3mwc_A 214 SSFELDQWETFKAMDAAKCLFHE-------Q-PLHYEALLDLKELGERI--ETPICLDESLISSRVAEFVAKLGISNIWN 283 (400)
T ss_dssp TCCCGGGHHHHHHHGGGCCSCEE-------S-CSCTTCHHHHHHHHHHS--SSCEEESTTCCSHHHHHHHHHTTCCSEEE
T ss_pred CCCCHHHHHHHHHHHhcCCCEEe-------C-CCChhhHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHhcCCCCEEE
Confidence 12 3456667778887763 1 11233577788888776 79999999999999999999976 79999
Q ss_pred EchHH
Q 018919 287 IGRPV 291 (349)
Q Consensus 287 ig~~~ 291 (349)
+--..
T Consensus 284 ~k~~~ 288 (400)
T 3mwc_A 284 IKIQR 288 (400)
T ss_dssp ECHHH
T ss_pred Ecchh
Confidence 86543
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.074 Score=48.95 Aligned_cols=91 Identities=18% Similarity=0.333 Sum_probs=55.8
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHH
Q 018919 217 DARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 291 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~ 291 (349)
.++.+.+.|+|+|++.++.|-... +-....+.+..+++.+++++|||+.=|=.+-.++++ |-.+|||+|++-.|+
T Consensus 26 lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 105 (292)
T 2vc6_A 26 LVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPY 105 (292)
T ss_dssp HHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 355678899999998655332110 111123455556666666899887655555566554 334899999999998
Q ss_pred HHHHhhcCHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEML 310 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l 310 (349)
++. -.++++.++++.+
T Consensus 106 y~~---~s~~~l~~~f~~i 121 (292)
T 2vc6_A 106 YNK---PTQEGIYQHFKAI 121 (292)
T ss_dssp SSC---CCHHHHHHHHHHH
T ss_pred CCC---CCHHHHHHHHHHH
Confidence 753 2345554444443
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.15 Score=47.53 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=56.1
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-....+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||+|++-.|++
T Consensus 38 v~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 117 (318)
T 3qfe_A 38 YAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAY 117 (318)
T ss_dssp HHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC
T ss_pred HHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 45577899999999765441110 111123455566666677899998666556666654 3348999999999976
Q ss_pred HHHhhcCHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLR 311 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~ 311 (349)
|.-- ..++++.++++.+.
T Consensus 118 ~~kp-~~~~~l~~~f~~ia 135 (318)
T 3qfe_A 118 FGKA-TTPPVIKSFFDDVS 135 (318)
T ss_dssp ---C-CCHHHHHHHHHHHH
T ss_pred cCCC-CCHHHHHHHHHHHH
Confidence 6300 12455555544443
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.43 Score=41.62 Aligned_cols=116 Identities=16% Similarity=0.023 Sum_probs=71.7
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcE--EE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPI--LV 209 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv--~v 209 (349)
+.+...+.++.+ +.|++.+++++.. .+ .+ .+.++++|+.+ +.|+ -+
T Consensus 17 ~~~~~~~~~~~~-~~~vd~ie~g~~~--------~~---------------------~~G~~~i~~lr~~~~~~~i~ld~ 66 (218)
T 3jr2_A 17 NLTDAVAVASNV-ASYVDVIEVGTIL--------AF---------------------AEGMKAVSTLRHNHPNHILVCDM 66 (218)
T ss_dssp SHHHHHHHHHHH-GGGCSEEEECHHH--------HH---------------------HHTTHHHHHHHHHCTTSEEEEEE
T ss_pred CHHHHHHHHHHh-cCCceEEEeCcHH--------HH---------------------hcCHHHHHHHHHhCCCCcEEEEE
Confidence 455556666664 4588988876410 00 01 36788998874 5555 45
Q ss_pred EEecCH-HHHHHHHHcCCCEEEEecCCCCCCCCchhhH-HHHHHHHHHhcCCCcEEE-ecCCCCHHHHHHHHHhCCCEEE
Q 018919 210 KGVLTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFL-DGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 210 K~v~~~-~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipvia-~GGI~~~~dv~kal~~GA~~V~ 286 (349)
|....+ ..++.+.++|+|+|++...++ ...+ +.+..+.+ . .+..++ .=|+.|++++.++...|+|.+.
T Consensus 67 ~l~d~p~~~~~~~~~aGad~i~vh~~~~------~~~~~~~~~~~~~-~--g~~~~~d~l~~~T~~~~~~~~~~g~d~v~ 137 (218)
T 3jr2_A 67 KTTDGGAILSRMAFEAGADWITVSAAAH------IATIAACKKVADE-L--NGEIQIEIYGNWTMQDAKAWVDLGITQAI 137 (218)
T ss_dssp EECSCHHHHHHHHHHHTCSEEEEETTSC------HHHHHHHHHHHHH-H--TCEEEEECCSSCCHHHHHHHHHTTCCEEE
T ss_pred eecccHHHHHHHHHhcCCCEEEEecCCC------HHHHHHHHHHHHH-h--CCccceeeeecCCHHHHHHHHHcCcccee
Confidence 665444 357889999999999954321 2222 22333333 2 455554 4456788899888889999876
Q ss_pred Ec
Q 018919 287 IG 288 (349)
Q Consensus 287 ig 288 (349)
+.
T Consensus 138 ~~ 139 (218)
T 3jr2_A 138 YH 139 (218)
T ss_dssp EE
T ss_pred ee
Confidence 54
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.1 Score=50.14 Aligned_cols=136 Identities=16% Similarity=0.048 Sum_probs=86.1
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCC-CCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDT-PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~-p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
+++...+.++++.+.|++++.+++.. ...|.. |..|. .+.....+.+. .+.++.+|+.+ +++|.+
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~-------~~s~~----~g~~~~~~~~~~~e~v~avr~avG~d~~l~v 214 (403)
T 2ox4_A 146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSR-------EGVFL----EGPLPSETIKIGVERVEAIRNAVGPDVDIIV 214 (403)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCC-------TTCCC----SSSCCHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCcccc-------ccCcc----cCCCchHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 67777788888889999999987520 000110 11111 00000001122 46688999877 578887
Q ss_pred EEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
..- .+.+++ +.+.+.|++.|-= ...+..++.+.++++.+ ++||++++.+.+..++.++++.| +
T Consensus 215 Dan~~~~~~~ai~~~~~l~~~~i~~iE~--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~~~ 284 (403)
T 2ox4_A 215 ENHGHTDLVSAIQFAKAIEEFNIFFYEE--------INTPLNPRLLKEAKKKI--DIPLASGERIYSRWGFLPFLEDRSI 284 (403)
T ss_dssp ECTTCSCHHHHHHHHHHHGGGCEEEEEC--------CSCTTSTHHHHHHHHTC--CSCEEECTTCCHHHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHHHHHhhCCCEEeC--------CCChhhHHHHHHHHHhC--CCCEEecCCcCCHHHHHHHHHcCCC
Confidence 642 345554 4455667665521 01223567777887776 79999999999999999999986 8
Q ss_pred CEEEEchH
Q 018919 283 SGIFIGRP 290 (349)
Q Consensus 283 ~~V~ig~~ 290 (349)
|.|++--.
T Consensus 285 d~v~ik~~ 292 (403)
T 2ox4_A 285 DVIQPDLG 292 (403)
T ss_dssp SEECCCHH
T ss_pred CEEecCcc
Confidence 99998643
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.37 Score=45.70 Aligned_cols=114 Identities=25% Similarity=0.306 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~ 211 (349)
+++.+.+.++++.+.|++.+-++++ | +. .+.++.+|+.+ ++++.+..
T Consensus 148 ~~~~~~~~a~~~~~~G~~~iKik~~-~------------------------------~~d~~~v~avr~a~~~~~l~vDa 196 (375)
T 1r0m_A 148 DEQATVDLVRRHVEQGYRRIKLKIK-P------------------------------GWDVQPVRATREAFPDIRLTVDA 196 (375)
T ss_dssp SHHHHHHHHHHHHHTTCSCEEEECB-T------------------------------TBSHHHHHHHHHHCTTSCEEEEC
T ss_pred CHHHHHHHHHHHHHhcccEEEEecC-h------------------------------HHHHHHHHHHHHHcCCCeEEEeC
Confidence 6677777888888899999988763 1 11 46688888776 67787763
Q ss_pred e--cCH---HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEE
Q 018919 212 V--LTA---EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGI 285 (349)
Q Consensus 212 v--~~~---~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V 285 (349)
- -+. +.++.+.+.|++.|- +. ..+..++.+.++++.+ ++||+++..+.+..|+.+++..| +|.|
T Consensus 197 n~~~~~~~~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~ipIa~dE~~~~~~~~~~~i~~~~~d~v 266 (375)
T 1r0m_A 197 NSAYTLADAGRLRQLDEYDLTYIE-------QP-LAWDDLVDHAELARRI--RTPLCLDESVASASDARKALALGAGGVI 266 (375)
T ss_dssp TTCCCGGGHHHHHTTGGGCCSCEE-------CC-SCTTCSHHHHHHHHHC--SSCEEESTTCCSHHHHHHHHHHTSCSEE
T ss_pred CCCCCHHHHHHHHHHHhCCCcEEE-------CC-CCcccHHHHHHHHHhC--CCCEEecCccCCHHHHHHHHHhCCCCEE
Confidence 1 122 334444566777663 10 1123466777777776 79999999999999999999987 8999
Q ss_pred EEc
Q 018919 286 FIG 288 (349)
Q Consensus 286 ~ig 288 (349)
++-
T Consensus 267 ~ik 269 (375)
T 1r0m_A 267 NLK 269 (375)
T ss_dssp EEC
T ss_pred EEC
Confidence 984
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.15 Score=47.35 Aligned_cols=86 Identities=23% Similarity=0.355 Sum_probs=55.8
Q ss_pred CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHH
Q 018919 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQT 201 (349)
Q Consensus 122 ~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~ 201 (349)
+.+.++.+-...+.+...+.+++++++|+++|.++-.... ..+. .+..|+.++++++
T Consensus 126 ~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~g~~~~---------~~~~--------------~~~~~~~i~~i~~ 182 (318)
T 1vhn_A 126 SGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVV---------QSFT--------------GRAEWKALSVLEK 182 (318)
T ss_dssp SSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTT---------TTTS--------------SCCCGGGGGGSCC
T ss_pred CCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEcCCCcc---------ccCC--------------CCcCHHHHHHHHc
Confidence 3445555533223232348899999999999988643210 0010 0111566777776
Q ss_pred hcCCcEEEEE-ecCHHHHHHHHH-cCCCEEEEe
Q 018919 202 ITKLPILVKG-VLTAEDARIAVQ-AGAAGIIVS 232 (349)
Q Consensus 202 ~~~~pv~vK~-v~~~~~a~~a~~-~G~d~I~v~ 232 (349)
++||++-+ +.+++++.++++ .|||+|.+.
T Consensus 183 --~ipVi~~GgI~s~~da~~~l~~~gad~V~iG 213 (318)
T 1vhn_A 183 --RIPTFVSGDIFTPEDAKRALEESGCDGLLVA 213 (318)
T ss_dssp --SSCEEEESSCCSHHHHHHHHHHHCCSEEEES
T ss_pred --CCeEEEECCcCCHHHHHHHHHcCCCCEEEEC
Confidence 89988755 579999999998 799999883
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.17 Score=46.24 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=36.7
Q ss_pred HHHHHHHHHhc--CCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~--~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++++++.+ ++||++.+ +.++++++.+.++|||+|++.+
T Consensus 214 ~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 214 PEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp HHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 47899999998 89999885 7899999999999999999954
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.096 Score=49.65 Aligned_cols=101 Identities=19% Similarity=0.063 Sum_probs=62.0
Q ss_pred CCCceEEEEeecCChhHHHHHHHHHHHcC-CCEEEEe--------cC--CCCCCchhHHhhhhcCCCCcCcccccCCCCC
Q 018919 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALT--------VD--TPRLGRREADIKNRFTLPPFLTLKNFQGLDL 189 (349)
Q Consensus 121 ~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G-~~~i~i~--------~d--~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~ 189 (349)
...|.++.+-...+.+.+.+.++.++++| +++|.++ +| ....-.+.+....+++ +---
T Consensus 192 ~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlS-----------G~~i 260 (354)
T 4ef8_A 192 YPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLG-----------GRYV 260 (354)
T ss_dssp CCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEE-----------GGGG
T ss_pred hCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCC-----------CCCC
Confidence 34577888866556556667777777887 9988642 11 1000000000000010 0000
Q ss_pred Cch-HHHHHHHHHhc-CCcEEE-EEecCHHHHHHHHHcCCCEEEEe
Q 018919 190 GKM-DEDVKWLQTIT-KLPILV-KGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 190 ~~~-~~~i~~i~~~~-~~pv~v-K~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
... |+.++++++.. ++||+. .++.+.+++.+++.+|||+|.+.
T Consensus 261 ~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vg 306 (354)
T 4ef8_A 261 LPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVG 306 (354)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEEC
T ss_pred chHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEh
Confidence 123 78899999886 699864 45789999999999999999984
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.41 Score=45.25 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=80.3
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~ 211 (349)
+++.+.+.++++.+.|++.+-++++ | +. .+.++.+|+.+ ++++.+-.
T Consensus 141 ~~~~~~~~a~~~~~~G~~~iKik~~-~------------------------------~~d~~~v~avr~a~~~~~l~vDa 189 (369)
T 2zc8_A 141 SVEDTLRVVERHLEEGYRRIKLKIK-P------------------------------GWDYEVLKAVREAFPEATLTADA 189 (369)
T ss_dssp SHHHHHHHHHHHHHTTCSCEEEECB-T------------------------------TBSHHHHHHHHHHCTTSCEEEEC
T ss_pred CHHHHHHHHHHHHHhhhheeeeecC-h------------------------------hHHHHHHHHHHHHcCCCeEEEec
Confidence 6677777888888899999988763 1 11 46688888776 57777743
Q ss_pred e--cCH---HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEE
Q 018919 212 V--LTA---EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGI 285 (349)
Q Consensus 212 v--~~~---~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V 285 (349)
- -+. +.++.+.+.|++.|- +. ..+..++.+.++++.. ++||+++.-+.+..|+.+++..| +|.|
T Consensus 190 n~~~~~~~~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~ipIa~dE~~~~~~~~~~~i~~~~~d~v 259 (369)
T 2zc8_A 190 NSAYSLANLAQLKRLDELRLDYIE-------QP-LAYDDLLDHAKLQREL--STPICLDESLTGAEKARKAIELGAGRVF 259 (369)
T ss_dssp TTCCCGGGHHHHHGGGGGCCSCEE-------CC-SCTTCSHHHHHHHHHC--SSCEEESTTCCSHHHHHHHHHHTCCSEE
T ss_pred CCCCCHHHHHHHHHHHhCCCcEEE-------CC-CCcccHHHHHHHHhhC--CCCEEEcCccCCHHHHHHHHHhCCCCEE
Confidence 1 122 334445566776663 10 1123456677777766 79999999999999999999987 8999
Q ss_pred EEch
Q 018919 286 FIGR 289 (349)
Q Consensus 286 ~ig~ 289 (349)
++--
T Consensus 260 ~ik~ 263 (369)
T 2zc8_A 260 NVKP 263 (369)
T ss_dssp EECH
T ss_pred EEch
Confidence 9853
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.13 Score=51.15 Aligned_cols=234 Identities=13% Similarity=0.117 Sum_probs=133.0
Q ss_pred hhcccccccccccC-CCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l~-~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|.... ..+++|++|.+- ++.+..|++.|||...+ +..||.+.++.|..+++.. +.++++..
T Consensus 35 ~t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~MdtvT------e~~lAia~a~~GgiGvIh~--~~~~~~q~ 106 (511)
T 3usb_A 35 LTFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTVT------EADMAIAMARQGGLGIIHK--NMSIEQQA 106 (511)
T ss_dssp CCGGGEEECCCCCCCCTTTSBCCEEEETTEEESSSEEECSCTTTC------SHHHHHHHHHHTCEEEECS--SSCHHHHH
T ss_pred cceEEEEEECCcccccccceEeeeEeecccccCCCccccCchhhc------HHHHHHHHHhcCCceeecc--cCCHHHHH
Confidence 46999999998643 346799999886 57889999999997654 6689999888888888853 34554422
Q ss_pred ----hhC-C-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCC-C--CCC-chhHHhhhhcC---------CC-Cc
Q 018919 119 ----STG-P-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-P--RLG-RREADIKNRFT---------LP-PF 178 (349)
Q Consensus 119 ----~~~-~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~-p--~~g-~r~~d~~~~~~---------~p-~~ 178 (349)
+.. . .......+.-.......+.++.+.+.++..+.+.=+. . ..| ...+|++.... .+ +-
T Consensus 107 ~~V~~V~~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~~~~~~~V~~vM~~~~~ 186 (511)
T 3usb_A 107 EQVDKVKRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFIQDYSIKISDVMTKEQL 186 (511)
T ss_dssp HHHHHHHTSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTCCCSSSBHHHHCCCCCC
T ss_pred HHHHHhhccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhhccCCCcHHHhcccCCC
Confidence 211 1 1000011111122335567777788888888664220 0 001 12344432100 00 00
Q ss_pred CcccccCC-----------------CCCC--c----h-H-HHHHHHHHh-------cCCcEEEEEec---CHHHHHHHHH
Q 018919 179 LTLKNFQG-----------------LDLG--K----M-D-EDVKWLQTI-------TKLPILVKGVL---TAEDARIAVQ 223 (349)
Q Consensus 179 ~~~~~~~~-----------------~~~~--~----~-~-~~i~~i~~~-------~~~pv~vK~v~---~~~~a~~a~~ 223 (349)
++.+.... ..|. . . . +.++.+... ..+++.+..-. ..+.++.+.+
T Consensus 187 vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aLve 266 (511)
T 3usb_A 187 ITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALVK 266 (511)
T ss_dssp CCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHHHHHHHh
Confidence 00000000 0010 0 0 1 122222210 01222222221 2467888999
Q ss_pred cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 224 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 224 ~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+|+|.|++....+ .....++.+.++++..+ ++||++ |+|.+.+++.++..+|||+|.+|
T Consensus 267 aGvd~I~Id~a~g----~~~~v~~~i~~i~~~~~-~~~vi~-g~v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 267 ASVDAIVLDTAHG----HSQGVIDKVKEVRAKYP-SLNIIA-GNVATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp TTCSEEEEECSCT----TSHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred hccceEEeccccc----chhhhhhHHHHHHHhCC-CceEEe-eeeccHHHHHHHHHhCCCEEEEC
Confidence 9999999964322 12335677888877663 577774 77999999999999999999874
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.21 Score=48.24 Aligned_cols=131 Identities=17% Similarity=0.169 Sum_probs=87.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|++++-+.+..+..+. .+. .+. ..+.+. .+.++.+|+.+ +.+|.+
T Consensus 143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~~------~g~-~~~---------~~~~~~d~~~v~avR~a~G~d~~l~v 206 (412)
T 4e4u_A 143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTAY------SGH-QLS---------LEVLDRCELFCRRVREAVGSKADLLF 206 (412)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEECCSCCCBTT------CCB-CCC---------HHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCccc------ccc-ccc---------hhhHHHHHHHHHHHHHHhCCCCeEEE
Confidence 36777777788888899999988776542110 000 000 001122 46688999887 578887
Q ss_pred EEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
..- -+.++| +.+.+.|++.|-= ...+..++.+.++++.+ ++||+++..+.+..|+.++++.| +
T Consensus 207 DaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~a~ 276 (412)
T 4e4u_A 207 GTHGQMVPSSAIRLAKRLEKYDPLWFEE--------PVPPGQEEAIAQVAKHT--SIPIATGERLTTKYEFHKLLQAGGA 276 (412)
T ss_dssp CCCSCBCHHHHHHHHHHHGGGCCSEEEC--------CSCSSCHHHHHHHHHTC--SSCEEECTTCCHHHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHHHhhhcCCcEEEC--------CCChhhHHHHHHHHhhC--CCCEEecCccCCHHHHHHHHHcCCC
Confidence 542 345554 5566788887741 01123567788887766 79999999999999999999987 7
Q ss_pred CEEEEch
Q 018919 283 SGIFIGR 289 (349)
Q Consensus 283 ~~V~ig~ 289 (349)
|.|++--
T Consensus 277 d~v~~d~ 283 (412)
T 4e4u_A 277 SILQLNV 283 (412)
T ss_dssp SEECCCT
T ss_pred CEEEeCc
Confidence 9998853
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.08 Score=49.32 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=56.8
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-....+.+..+++.+++++|||+.=|= +-.++++ |-++|||+|++-.|++
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y 117 (314)
T 3d0c_A 39 VEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVH 117 (314)
T ss_dssp HHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 34567899999988654331110 1111234556666666678999865554 5566654 3347999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. -.++++.++++.+.+
T Consensus 118 ~~---~s~~~l~~~f~~va~ 134 (314)
T 3d0c_A 118 PY---ITDAGAVEYYRNIIE 134 (314)
T ss_dssp SC---CCHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHH
Confidence 63 245666666555544
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.1 Score=47.26 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++++|+.+++||.+.. +.+++++.. +..|||+++|.+
T Consensus 195 ~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~gADgvIVGS 235 (262)
T 2ekc_A 195 KKKVEEYRELCDKPVVVGFGVSKKEHARE-IGSFADGVVVGS 235 (262)
T ss_dssp HHHHHHHHHHCCSCEEEESSCCSHHHHHH-HHTTSSEEEECH
T ss_pred HHHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHcCCCEEEECH
Confidence 4679999998899998876 456999999 788999999953
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.2 Score=48.16 Aligned_cols=138 Identities=14% Similarity=-0.060 Sum_probs=87.3
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCC----Cch-HHHHHHHHHhc--CC
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL----GKM-DEDVKWLQTIT--KL 205 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~----~~~-~~~i~~i~~~~--~~ 205 (349)
.+++.+.+.++++.+.|+.++-+.++..... .+. ...|++.. +. ...+ .+. .+.++.+|+.+ +.
T Consensus 132 ~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~---~~~---~~~~~~~~-~g--~~~~~~~~~~~d~~~v~avR~a~G~d~ 202 (401)
T 3sbf_A 132 DTMEGIYDLVEGFLEKGYKHIRCQLGFYGGV---PTD---LHTTQNPT-EG--SYYDQDQYMDNTLTMFKSLREKYGNQF 202 (401)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEESCCCSC---GGG---SCCCSSCC-SS--EECCHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeccCCcc---ccc---cccccccc-cc--ccccchHHHHHHHHHHHHHHHHcCCCC
Confidence 5778888888888889999999888653110 000 00000000 00 0011 122 46688999987 57
Q ss_pred cEEEEEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 018919 206 PILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279 (349)
Q Consensus 206 pv~vK~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~ 279 (349)
+|.+..- -+.++| +.+.+.|++.|-=- ..+..++.+.++++.+ .+||++++.+.+..|+.++++
T Consensus 203 ~l~vDan~~~~~~~A~~~~~~L~~~~i~~iEqP--------~~~~~~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~ 272 (401)
T 3sbf_A 203 HILHDVHERLFPNQAIQFAKEVEQYKPYFIEDI--------LPPNQTEWLDNIRSQS--SVSLGLGELFNNPEEWKSLIA 272 (401)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHGGGCCSCEECS--------SCTTCGGGHHHHHTTC--CCCEEECTTCCSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CChhHHHHHHHHHhhC--CCCEEeCCccCCHHHHHHHHh
Confidence 8887643 345554 55666788776310 1122355566776655 799999999999999999999
Q ss_pred hC-CCEEEEch
Q 018919 280 LG-ASGIFIGR 289 (349)
Q Consensus 280 ~G-A~~V~ig~ 289 (349)
.| +|.|++--
T Consensus 273 ~~~~d~v~~k~ 283 (401)
T 3sbf_A 273 NRRIDFIRCHV 283 (401)
T ss_dssp TTCCSEECCCG
T ss_pred cCCCCEEecCc
Confidence 86 79998864
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.2 Score=46.60 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCcEEEEEecC--------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEE
Q 018919 193 DEDVKWLQTITKLPILVKGVLT--------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 264 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~--------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia 264 (349)
.+.++++++.++.|+.+....+ .+.++.+.++|+|+|.++ ++. | .+.+..+++. .++++.
T Consensus 56 ~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~--~g~-----p--~~~~~~l~~~---gi~vi~ 123 (328)
T 2gjl_A 56 AAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETA--GND-----P--GEHIAEFRRH---GVKVIH 123 (328)
T ss_dssp HHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEE--ESC-----C--HHHHHHHHHT---TCEEEE
T ss_pred HHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEc--CCC-----c--HHHHHHHHHc---CCCEEe
Confidence 4568888888888887776654 367888999999999884 221 1 3445554442 578884
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEE
Q 018919 265 DGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+.+.+++.++...|||++.+
T Consensus 124 --~v~t~~~a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 124 --KCTAVRHALKAERLGVDAVSI 144 (328)
T ss_dssp --EESSHHHHHHHHHTTCSEEEE
T ss_pred --eCCCHHHHHHHHHcCCCEEEE
Confidence 489999999999999999998
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=94.30 E-value=0.34 Score=42.71 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=55.2
Q ss_pred ceEEEEe---ecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHH
Q 018919 124 IRFFQLY---VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWL 199 (349)
Q Consensus 124 ~~~~Ql~---~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i 199 (349)
+.++.+. ..-+.+...+.++.++++|+++|. .++. +. .... |+.++.+
T Consensus 117 pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~--tstg------------~~--------------~gga~~~~i~~v 168 (225)
T 1mzh_A 117 SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIK--TSTG------------FA--------------PRGTTLEEVRLI 168 (225)
T ss_dssp TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEE--CCCS------------CS--------------SSCCCHHHHHHH
T ss_pred CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEE--ECCC------------CC--------------CCCCCHHHHHHH
Confidence 4566662 223455577888899999999983 3321 10 0112 7888888
Q ss_pred HHhc--CCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 200 QTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 200 ~~~~--~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.+ ++||+.=+ +.+.+++...+++|||.|-++
T Consensus 169 ~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s 204 (225)
T 1mzh_A 169 KSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTS 204 (225)
T ss_dssp HHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHhCCCCcEEEECCCCCHHHHHHHHHhCchHHHHc
Confidence 8877 68875443 689999999999999976553
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.074 Score=47.44 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=49.4
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH----------HHHHHHhCCCEEEEc
Q 018919 219 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGIFIG 288 (349)
Q Consensus 219 ~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d----------v~kal~~GA~~V~ig 288 (349)
+.+.+.|.++++.+. +.+.++++.++ ..+++.+|||+-... ..+++..|||.+.+|
T Consensus 149 ~~~~~~G~~g~v~~~-------------~~i~~lr~~~~-~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvG 214 (239)
T 1dbt_A 149 KQAEESGLDGVVCSV-------------HEAKAIYQAVS-PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVG 214 (239)
T ss_dssp HHHHHTTCSEEECCG-------------GGHHHHTTTSC-TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEEC
T ss_pred HHHHHhCCCEEEECH-------------HHHHHHHHhcC-CCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEC
Confidence 335667888865531 22344444443 468999999986543 367889999999999
Q ss_pred hHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 289 RPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 289 ~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
|+++.+ .. ..+.++.+++++.
T Consensus 215 r~I~~a---~d---p~~a~~~l~~~i~ 235 (239)
T 1dbt_A 215 RSITKA---ED---PVKAYKAVRLEWE 235 (239)
T ss_dssp HHHHTS---SC---HHHHHHHHHHHHH
T ss_pred hhhcCC---CC---HHHHHHHHHHHHH
Confidence 998742 11 3345555555543
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.13 Score=47.84 Aligned_cols=90 Identities=14% Similarity=0.240 Sum_probs=57.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCC-CEEEEchHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGA-SGIFIGRPV 291 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA-~~V~ig~~~ 291 (349)
++.+++.|+|+|.+.++.|-... +-....+.+..+++.+++++|||+.-|=.+-.++++ +-.+|| |+|++-.|+
T Consensus 34 v~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~ 113 (311)
T 3h5d_A 34 IEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPY 113 (311)
T ss_dssp HHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCC
Confidence 45577899999999765442110 111123455666666667899998777666777764 334697 999999998
Q ss_pred HHHHhhcCHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEML 310 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l 310 (349)
++. -.++++.++++.+
T Consensus 114 y~~---~s~~~l~~~f~~v 129 (311)
T 3h5d_A 114 YNK---PSQEGMYQHFKAI 129 (311)
T ss_dssp SSC---CCHHHHHHHHHHH
T ss_pred CCC---CCHHHHHHHHHHH
Confidence 763 2345554444443
|
| >3m16_A Transaldolase; dimer, molecular replac swiss-model, structural genomics, PSI-2, protein structure initiative; 2.79A {Oleispira antarctica} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=94.28 E-value=2.8 Score=39.04 Aligned_cols=144 Identities=14% Similarity=0.156 Sum_probs=90.9
Q ss_pred CCCceEEEEee--cCChhHHHHHHHHHHHc----CCC--EEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch
Q 018919 121 GPGIRFFQLYV--YKDRNVVAQLVRRAERA----GFK--AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (349)
Q Consensus 121 ~~~~~~~Ql~~--~~~~~~~~~~~~~~~~~----G~~--~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (349)
.+++..+|+.. ..|.+.+.+.++++.+. |.+ -+.|.+.++.. |
T Consensus 97 v~G~VS~EV~~~ls~d~e~~i~eA~~l~~l~~~~gi~~~nv~IKIP~T~e---------------G-------------- 147 (329)
T 3m16_A 97 IPGVISTEVDARLSFDTQATVAKARKLIRLYQDAGIDSDRILIKIASTWE---------------G-------------- 147 (329)
T ss_dssp CSSCEEEECCGGGTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEECSHH---------------H--------------
T ss_pred CCCcEEEEECCcccCCHHHHHHHHHHHHHhhhhhCCCCCcEEEEeCCCHH---------------H--------------
Confidence 45777778754 24666666666665543 544 45665533200 0
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEec----------CCCCCCC-CchhhHHHHHHHHHHhc--CC
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN----------HGARQLD-YVPATIMALEEVVKATQ--GR 259 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~----------~gg~~~~-~~~~~~~~l~~i~~~~~--~~ 259 (349)
.+.++.+.+. ++++-+-.+.+...+..|.++|+..|...- .|+.... .+.+....+.++.+..+ +-
T Consensus 148 l~A~~~L~~~-GI~~N~TliFS~~Qa~aaA~AGa~~ISPFVgRidd~~~~~~~~~~~~~~~~~Gv~~v~~i~~~y~~~g~ 226 (329)
T 3m16_A 148 IQAAKILEAE-GIHCNLTLLFHFAQAQACAEAGTTLISPFVGRILDWYKANSGQSEYSASEDPGVVSVTEIYNFYKSHGF 226 (329)
T ss_dssp HHHHHHHHHT-TCCEEEEEECSHHHHHHHHHTTCSEEEEBHHHHHHHHHTTSSCCCCCTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHcCCcEEEeehhHHHHHhhhcccccccccccCcHHHHHHHHHHHHHHcCC
Confidence 3456666544 899999999999999999999999887641 1211110 11234555556655442 22
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 260 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 260 ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
-+.+..-.+|+..++.. .+|||.+-|.-.++..+.
T Consensus 227 ~T~v~~ASfRn~~~V~a--LaG~d~vTipp~~l~~l~ 261 (329)
T 3m16_A 227 KTIVMGASFRNTGEIEE--LAGCDRLTISPELLAQLE 261 (329)
T ss_dssp CCEEEEBCCSCHHHHHT--TTTSSEEEECHHHHHHHH
T ss_pred CCEEEeCCCCCHHHHHH--hhCCCEEECCHHHHHHHH
Confidence 34455556999999984 469999999988887664
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.17 Score=48.77 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCC----Cch-HHHHHHHHHhc--CCc
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL----GKM-DEDVKWLQTIT--KLP 206 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~----~~~-~~~i~~i~~~~--~~p 206 (349)
+++...+.++++.+.|++++.+++..+. |.. ..| .. +-.+ .+. .+.++.+|+.+ +++
T Consensus 149 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~-G~~--------~~~------~~-G~~~~~~~~~~~~e~v~avRea~G~d~~ 212 (410)
T 2qq6_A 149 SNEEYIAVAREAVERGFDAIKLDVDDIT-GPL--------HRD------FW-NGAISPREHEAMVARVAAVREAVGPEVE 212 (410)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCSS-STT--------CSC------SS-SCCCCHHHHHHHHHHHHHHHHHHCSSSE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeccccC-Ccc--------cCC------cC-ccccchhhHHHHHHHHHHHHHhcCCCCE
Confidence 4566667778888899999998872110 100 000 00 0011 123 56789999887 578
Q ss_pred EEEEEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh
Q 018919 207 ILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 207 v~vK~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~ 280 (349)
|.+..- .+.+++ +.+.+.|++.|-- ...+..++.+.++++.+ ++||++++.+.+..++.++++.
T Consensus 213 l~vDan~~~~~~~a~~~~~~l~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~ 282 (410)
T 2qq6_A 213 VAIDMHGRFDIPSSIRFARAMEPFGLLWLEE--------PTPPENLDALAEVRRST--STPICAGENVYTRFDFRELFAK 282 (410)
T ss_dssp EEEECTTCCCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHTTC--SSCEEECTTCCSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcCCCeEEC--------CCChhhHHHHHHHHhhC--CCCEEeCCCcCCHHHHHHHHHc
Confidence 877642 355554 4566678887631 01223577777777665 7999999999999999999998
Q ss_pred C-CCEEEEch
Q 018919 281 G-ASGIFIGR 289 (349)
Q Consensus 281 G-A~~V~ig~ 289 (349)
| +|.|++--
T Consensus 283 ~~~d~v~ik~ 292 (410)
T 2qq6_A 283 RAVDYVMPDV 292 (410)
T ss_dssp TCCSEECCBH
T ss_pred CCCCEEecCc
Confidence 6 89998853
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.82 Score=43.63 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=83.3
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEE-
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPIL- 208 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~- 208 (349)
.+++.+.+.++++.+.|++.+-+.+++. ++. .+.++.+|+.+ +.++.
T Consensus 141 ~~~e~~~~~a~~~~~~G~~~~KiKvG~~-----------------------------~~~d~~~v~avR~a~g~~~~l~~ 191 (391)
T 3gd6_A 141 EEVESNLDVVRQKLEQGFDVFRLYVGKN-----------------------------LDADEEFLSRVKEEFGSRVRIKS 191 (391)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEECSSC-----------------------------HHHHHHHHHHHHHHHGGGCEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeCCC-----------------------------HHHHHHHHHHHHHHcCCCCcEEE
Confidence 3566677777788889999998887541 112 46788888886 57787
Q ss_pred EEEe--cCHHHH----HHHHHcCC--CEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh
Q 018919 209 VKGV--LTAEDA----RIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 209 vK~v--~~~~~a----~~a~~~G~--d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~ 280 (349)
+..- -+.++| +.+.+.|+ +.|- + ...+..++.+.++++.+ .+|| +..+.+..|+.++++.
T Consensus 192 vDan~~~~~~~A~~~~~~l~~~~i~~~~iE-------q-P~~~~d~~~~~~l~~~~--~iPI--dE~~~~~~~~~~~~~~ 259 (391)
T 3gd6_A 192 YDFSHLLNWKDAHRAIKRLTKYDLGLEMIE-------S-PAPRNDFDGLYQLRLKT--DYPI--SEHVWSFKQQQEMIKK 259 (391)
T ss_dssp EECTTCSCHHHHHHHHHHHTTCCSSCCEEE-------C-CSCTTCHHHHHHHHHHC--SSCE--EEECCCHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHHhcCCCcceec-------C-CCChhhHHHHHHHHHHc--CCCc--CCCCCCHHHHHHHHHc
Confidence 6532 355554 45556777 5552 1 01223577788888876 7999 8899999999999997
Q ss_pred C-CCEEEEchHH
Q 018919 281 G-ASGIFIGRPV 291 (349)
Q Consensus 281 G-A~~V~ig~~~ 291 (349)
| +|.|++--..
T Consensus 260 ~~~d~v~~k~~~ 271 (391)
T 3gd6_A 260 DAIDIFNISPVF 271 (391)
T ss_dssp TCCSEEEECHHH
T ss_pred CCCCEEEECchh
Confidence 6 7999998654
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=94.21 E-value=0.47 Score=44.93 Aligned_cols=112 Identities=13% Similarity=0.006 Sum_probs=76.9
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEEEe--cC
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVKGV--LT 214 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK~v--~~ 214 (349)
+..+.+++.|+..+-+.++.. +++. .+.++.+|+.+ +.++.+..- -+
T Consensus 149 ~~~~~~~~~G~~~~KiKvg~~----------------------------~~~~d~~~v~avR~~~g~~~~l~vDan~~~~ 200 (370)
T 1chr_A 149 SAVEMIERRRHNRFKVKLGFR----------------------------SPQDDLIHMEALSNSLGSKAYLRVDVNQAWD 200 (370)
T ss_dssp HHHHHHHTTCCCEEEEECSSS----------------------------CSHHHHHHHHHHHHHSSTTCCEEEECTTCCC
T ss_pred HHHHHHHHCCCCEEEEecCCC----------------------------CHHHHHHHHHHHHHhcCCCCEEEEECCCCCC
Confidence 333344447999988877531 1222 56789999987 478888642 23
Q ss_pred HHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEch
Q 018919 215 AED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGR 289 (349)
Q Consensus 215 ~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~ 289 (349)
.++ ++.+.+.|++.|- | ...+..++.+.++++.. .+||+++.-+.+..|+.+++..| +|.|++--
T Consensus 201 ~~~a~~~~~~l~~~~i~~iE-------q-P~~~~~~~~~~~l~~~~--~iPia~dE~~~~~~~~~~~~~~~~~d~v~~k~ 270 (370)
T 1chr_A 201 EQVASVYIPELEALGVELIE-------Q-PVGRENTQALRRLSDNN--RVAIMADESLSTLASAFDLARDRSVDVFSLKL 270 (370)
T ss_dssp TTHHHHHTHHHHTTTEEEEE-------C-CSCTTCHHHHHHHHHHS--CSEEEESSSCCSHHHHHHHHTTTSCSEEEECT
T ss_pred HHHHHHHHHHHHhcCCCEEE-------C-CCCcccHHHHHHHHhhC--CCCEEeCCCcCCHHHHHHHHHcCCCCEEEECc
Confidence 333 4556667766652 1 11233567788888776 79999999999999999999975 89999864
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.19 E-value=2.7 Score=39.40 Aligned_cols=181 Identities=13% Similarity=0.148 Sum_probs=104.5
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-----hCC-CceEEEEeecCChhHHHHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-----TGP-GIRFFQLYVYKDRNVVAQL 141 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-----~~~-~~~~~Ql~~~~~~~~~~~~ 141 (349)
|.++.|+.-.+-.+.+.-..+++-.-+.|+.+++ + ++...+.+|..+ ... .+.+...-. .+-....++
T Consensus 32 ~alvTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~grvpViaGvg~-~st~eai~l 110 (344)
T 2hmc_A 32 PALMTPCRQDRTPDFDALVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKAGIPVIVGTGA-VNTASAVAH 110 (344)
T ss_dssp EBCCCCBCTTSSBCHHHHHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHTTCCEEEECCC-SSHHHHHHH
T ss_pred EeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHH
Confidence 5566776433323444445677777778876543 3 334456665322 112 345566533 455667788
Q ss_pred HHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHH-hcCCcEEEEEe------c
Q 018919 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQT-ITKLPILVKGV------L 213 (349)
Q Consensus 142 ~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~-~~~~pv~vK~v------~ 213 (349)
++.+++.|++++.+. .|.. .-|. +.+ ..+..+.+.+ .+++||++=.+ .
T Consensus 111 a~~A~~~Gadavlv~--~P~y-----------~~~~-----------s~~~l~~~f~~IA~aa~~lPiilYn~P~tg~~l 166 (344)
T 2hmc_A 111 AVHAQKVGAKGLMVI--PRVL-----------SRGS-----------VIAAQKAHFKAILSAAPEIPAVIYNSPYYGFAT 166 (344)
T ss_dssp HHHHHHHTCSEEEEC--CCCS-----------SSTT-----------CHHHHHHHHHHHHHHSTTSCEEEEEBGGGTBCC
T ss_pred HHHHHhcCCCEEEEC--CCcc-----------CCCC-----------CHHHHHHHHHHHHhhCCCCcEEEEecCccCCCc
Confidence 999999999998763 2321 1000 111 2566778888 78999998665 3
Q ss_pred CHHHHHHH-HHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH-HhCCCEEEEchH
Q 018919 214 TAEDARIA-VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRP 290 (349)
Q Consensus 214 ~~~~a~~a-~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal-~~GA~~V~ig~~ 290 (349)
+++...++ .+.. +-+|.-+ .+|.++..+.++.+..++++.|+ +|. ..-++.++ .+||++++-+.+
T Consensus 167 ~~e~~~~L~a~~pnIvGiKds--------sgp~d~~~~~~~~~~~~~~f~v~-~G~---D~~~l~~l~~~Ga~G~is~~a 234 (344)
T 2hmc_A 167 RADLFFALRAEHKNLVGFKEF--------GGPADMRYAAENITSRDDEVTLM-IGV---DTAVVHGFVNCGATGAITGIG 234 (344)
T ss_dssp CHHHHHHHHHHCTTEEEEEEC--------SCHHHHHHHHHHTSCSSSSCEEE-ECS---GGGHHHHHHHSCCCEEEESGG
T ss_pred CHHHHHHHHhcCCCEEEEEcC--------CCCCCHHHHHHHHHHcCCCEEEE-ECc---HHHHHHHHHHcCCCEEEeCHH
Confidence 56777776 5542 2233221 22224555555554443455554 332 23466788 899999999985
|
| >3tkf_A Transaldolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel/TIM barrel; HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB: 3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A | Back alignment and structure |
|---|
Probab=94.16 E-value=3.1 Score=38.97 Aligned_cols=144 Identities=10% Similarity=0.059 Sum_probs=91.5
Q ss_pred CCCceEEEEee--cCChhHHHHHHHHHHH----cCCC--EEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch
Q 018919 121 GPGIRFFQLYV--YKDRNVVAQLVRRAER----AGFK--AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (349)
Q Consensus 121 ~~~~~~~Ql~~--~~~~~~~~~~~~~~~~----~G~~--~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (349)
.+++..+|+.. ..|.+.+.+.++++.+ .|.+ -+.|-+.++.. |
T Consensus 116 v~G~VS~EV~~~ls~d~e~~i~eA~~l~~l~~~~gi~~~nv~IKIP~T~e---------------G-------------- 166 (345)
T 3tkf_A 116 IEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIMIAATWE---------------G-------------- 166 (345)
T ss_dssp CSSCEEEECCGGGTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEECSHH---------------H--------------
T ss_pred CCCCEEEEEcCCccCCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeCCCHH---------------H--------------
Confidence 45777788764 2466666666666654 3544 45665533200 0
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEec----------CCCCCCC--CchhhHHHHHHHHHHh---c
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN----------HGARQLD--YVPATIMALEEVVKAT---Q 257 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~----------~gg~~~~--~~~~~~~~l~~i~~~~---~ 257 (349)
.+.++.+.+. ++++-+-.+.+.+.+..|.++|+..|...- .|..... ...+....+.++.+.. +
T Consensus 167 i~A~~~L~~e-GI~vN~TliFS~~Qa~~aAeAGa~~ISPFVGRidD~~~~~~~~~~~~~~~~~~Gv~~v~~i~~~yk~~g 245 (345)
T 3tkf_A 167 IKAAKLLQKE-GINCNLTLIFDKAQAKACAEAGVYLVSPFVGRITDWQMQQNNLKTFPAIADDDGVNSVKAIYKLYKSHG 245 (345)
T ss_dssp HHHHHHHHHT-TCCEEEEEECCHHHHHHHHHTTCSEEEEBSHHHHHHHHHHTTCSSCCCGGGCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHcCCcEEEeecchHHHHhhhccccccccccccCCHHHHHHHHHHHHHHcC
Confidence 3456666655 999999999999999999999999987641 0111110 0123345555555543 2
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
.+.. +..-.+|+..++.. .+|||.+-|.-.++..+..
T Consensus 246 ~~T~-Vl~ASfRn~~~V~a--LaG~d~vTipp~lL~~L~~ 282 (345)
T 3tkf_A 246 FKTI-VMGASFRNVEQVIA--LAGCDALTISPVLLEELKN 282 (345)
T ss_dssp CCSE-EEEBCCSSHHHHHT--TTTSSEEEECHHHHHHHHT
T ss_pred CCCE-EEeCCCCCHHHHHH--HhCCCEEECCHHHHHHHHh
Confidence 2444 44555999999983 4699999999888877653
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=94.15 E-value=1.2 Score=40.33 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=53.0
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
.+.+...+.+++..+.|++.|.|+...+..- +.+. ...|+.+++.+++||.+ .
T Consensus 31 ~~~~~a~~~a~~~v~~GAdiIDIg~~s~~~e-------------------------E~~rv~~vi~~l~~~~~~pisI-D 84 (271)
T 2yci_X 31 KDPRPIQEWARRQAEKGAHYLDVNTGPTADD-------------------------PVRVMEWLVKTIQEVVDLPCCL-D 84 (271)
T ss_dssp TCCHHHHHHHHHHHHTTCSEEEEECCSCSSC-------------------------HHHHHHHHHHHHHHHCCCCEEE-E
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCchh-------------------------HHHHHHHHHHHHHHhCCCeEEE-e
Confidence 3556677788888899999999887653210 1111 35688888878999987 5
Q ss_pred ecCHHHHHHHHHc--CCCEEE
Q 018919 212 VLTAEDARIAVQA--GAAGII 230 (349)
Q Consensus 212 v~~~~~a~~a~~~--G~d~I~ 230 (349)
..+++.++.++++ |++.|-
T Consensus 85 T~~~~v~~aal~a~~Ga~iIN 105 (271)
T 2yci_X 85 STNPDAIEAGLKVHRGHAMIN 105 (271)
T ss_dssp CSCHHHHHHHHHHCCSCCEEE
T ss_pred CCCHHHHHHHHHhCCCCCEEE
Confidence 6688999999999 998875
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.59 Score=43.53 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCCcEEEEEec-C---HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCC
Q 018919 193 DEDVKWLQTITKLPILVKGVL-T---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 268 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~-~---~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 268 (349)
.+.++++++.++.|+.+.... + .+.++.+.+.|+|.|.++ ++. | .+.+..+++. .++|+. ++
T Consensus 66 ~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~--~g~-----p--~~~~~~l~~~---g~~v~~--~v 131 (326)
T 3bo9_A 66 RKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFG--AGN-----P--TKYIRELKEN---GTKVIP--VV 131 (326)
T ss_dssp HHHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEE--SSC-----C--HHHHHHHHHT---TCEEEE--EE
T ss_pred HHHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEEC--CCC-----c--HHHHHHHHHc---CCcEEE--Ec
Confidence 456888888778899888764 2 366788999999999883 321 2 2344444432 577775 68
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q 018919 269 RRGTDVFKALALGASGIFI 287 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~i 287 (349)
.+.+++.++...|||+|.+
T Consensus 132 ~s~~~a~~a~~~GaD~i~v 150 (326)
T 3bo9_A 132 ASDSLARMVERAGADAVIA 150 (326)
T ss_dssp SSHHHHHHHHHTTCSCEEE
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999998
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.26 Score=47.72 Aligned_cols=138 Identities=15% Similarity=-0.018 Sum_probs=88.0
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCC----Cch-HHHHHHHHHhc--CC
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL----GKM-DEDVKWLQTIT--KL 205 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~----~~~-~~~i~~i~~~~--~~ 205 (349)
.+++.+.+.++++.+.|+.++-+.++..... .+. ...|.+.. +. ...+ .+. .+.++.+|+.+ ++
T Consensus 153 ~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~---~~~---~~~~~~~~-~~--~~~~~~~~~~~d~e~v~avR~avG~d~ 223 (422)
T 3tji_A 153 ETLEALFASVDALIAQGYRHIRCQLGFYGGT---PSA---LHAPDNPT-PG--AWFDQQEYMSNTVEMFHALREKYGWKL 223 (422)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEEESCCCBC---GGG---SCCCSSCC-SS--EECCHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeccCCcc---ccc---cccccccc-cc--ccccchhHHHHHHHHHHHHHHHcCCCC
Confidence 5677788888888889999999888653110 000 00000000 00 0011 122 46689999987 57
Q ss_pred cEEEEEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 018919 206 PILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279 (349)
Q Consensus 206 pv~vK~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~ 279 (349)
+|.+..- -+.++| +.+.+.|++.|-= ...+..++.+.++++.+ .+||++++.+.+..|+.++++
T Consensus 224 ~L~vDaN~~~~~~~A~~~~~~Le~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~ll~ 293 (422)
T 3tji_A 224 HILHDVHERLFPQQAVQLAKQLEPFQPYFIED--------ILPPQQSAWLEQVRQQS--CVPLALGELFNNPAEWHDLIV 293 (422)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC--------CSCGGGGGGHHHHHHHC--CCCEEECTTCCSGGGTHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCeEEC--------CCChhhHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHh
Confidence 8887642 355554 4556678877631 11123456677777776 799999999999999999999
Q ss_pred hC-CCEEEEch
Q 018919 280 LG-ASGIFIGR 289 (349)
Q Consensus 280 ~G-A~~V~ig~ 289 (349)
.| +|.|++--
T Consensus 294 ~ga~d~v~~k~ 304 (422)
T 3tji_A 294 NRRIDFIRCHV 304 (422)
T ss_dssp TTCCSEECCCG
T ss_pred cCCCCEEecCc
Confidence 86 79998854
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.16 Score=48.90 Aligned_cols=68 Identities=12% Similarity=0.230 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+.++.+.++|+|+|.+....+ + ....++.+.++++.++ ++||++ |++.+.+++.++..+|||+|.+|
T Consensus 155 ~~~a~~~~~~G~d~i~i~~~~g---~-~~~~~e~i~~ir~~~~-~~pviv-~~v~~~~~a~~a~~~Gad~I~vg 222 (404)
T 1eep_A 155 IERVEELVKAHVDILVIDSAHG---H-STRIIELIKKIKTKYP-NLDLIA-GNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_dssp HHHHHHHHHTTCSEEEECCSCC---S-SHHHHHHHHHHHHHCT-TCEEEE-EEECSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEeCCCC---C-hHHHHHHHHHHHHHCC-CCeEEE-cCCCcHHHHHHHHhcCCCEEEEC
Confidence 4668888999999999832111 1 1234667777777663 688887 77899999999999999999993
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.4 Score=42.34 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=34.5
Q ss_pred HHHHHHHHHhc-----CCcEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~-----~~pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.++++|+.. ++||.+-+-.+.+.+..+.++|||++++.
T Consensus 157 ~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~vvvG 201 (230)
T 1tqj_A 157 LPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAG 201 (230)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCEEEEC
Confidence 67788888877 79998877777799999999999999985
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.19 Score=48.58 Aligned_cols=145 Identities=14% Similarity=-0.016 Sum_probs=88.1
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCch--hHHhhhhcCCCCcCcccccCCCCC----Cch-HHHHHHHHHhc--
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR--EADIKNRFTLPPFLTLKNFQGLDL----GKM-DEDVKWLQTIT-- 203 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r--~~d~~~~~~~p~~~~~~~~~~~~~----~~~-~~~i~~i~~~~-- 203 (349)
.+++.+.+.++++.+.|++++-+.++.|..... ..+-+..+ .|..-..+... ..+ .+. .+.++.+|+.+
T Consensus 142 ~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~-~~~~~~~p~~~-~~~~~~~~~~d~~~v~avR~a~G~ 219 (418)
T 3r4e_A 142 SDIAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYY-EPADASLPSVT-GWDTRKALNYVPKLFEELRKTYGF 219 (418)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEEECCTTC-------------------CCCCEE-EECHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcccccccccccccccc-ccccccccccc-cccchhHHHHHHHHHHHHHHHcCC
Confidence 577888888888888999999998876521000 00000000 00000000000 000 112 46688999987
Q ss_pred CCcEEEEEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 018919 204 KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 277 (349)
Q Consensus 204 ~~pv~vK~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka 277 (349)
+.+|.+..- -+.++ ++.+.+.|++.|-= ...+..++.+.++++.+ .+||++++.+.+..|+.++
T Consensus 220 d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~ 289 (418)
T 3r4e_A 220 DHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLED--------CTPAENQEAFRLVRQHT--VTPLAVGEIFNTIWDAKDL 289 (418)
T ss_dssp SSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEES--------CSCCSSGGGGHHHHHHC--CSCEEECTTCCSGGGTHHH
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCccCHHHHHHHHhcC--CCCEEEcCCcCCHHHHHHH
Confidence 578887642 34555 45566788887731 01122455567777776 7999999999999999999
Q ss_pred HHhC-CCEEEEch
Q 018919 278 LALG-ASGIFIGR 289 (349)
Q Consensus 278 l~~G-A~~V~ig~ 289 (349)
++.| +|.|++--
T Consensus 290 l~~~a~d~v~~k~ 302 (418)
T 3r4e_A 290 IQNQLIDYIRATV 302 (418)
T ss_dssp HHTTCCSEECCCT
T ss_pred HHcCCCCeEecCc
Confidence 9987 79998864
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=3.5 Score=37.56 Aligned_cols=174 Identities=15% Similarity=0.096 Sum_probs=100.4
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------hCCCceEEEEeecCChhHHHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------TGPGIRFFQLYVYKDRNVVAQ 140 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~~~~~~~~Ql~~~~~~~~~~~ 140 (349)
|.++.|+.-.+-.+.++-..+++-.-+.|+.+++ ++ +...+.+|-.+ ...+ .+...- ..+-..+.+
T Consensus 5 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g-viaGvg-~~~t~~ai~ 82 (293)
T 1w3i_A 5 TPIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK-IIFQVG-GLNLDDAIR 82 (293)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC-EEEECC-CSCHHHHHH
T ss_pred EEeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC-EEEecC-CCCHHHHHH
Confidence 4456666432323444445677777788886554 33 23456666332 2224 444543 245566778
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCC-CCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe------
Q 018919 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV------ 212 (349)
Q Consensus 141 ~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~-p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v------ 212 (349)
+++.+++.|++++.+.. |.. .- | +.+ ..+..+.+.+.+++||++=.+
T Consensus 83 la~~A~~~Gadavlv~~--P~y-----------~~~~------------s~~~l~~~f~~va~a~~lPiilYn~P~~tg~ 137 (293)
T 1w3i_A 83 LAKLSKDFDIVGIASYA--PYY-----------YPRM------------SEKHLVKYFKTLCEVSPHPVYLYNYPTATGK 137 (293)
T ss_dssp HHHHGGGSCCSEEEEEC--CCS-----------CSSC------------CHHHHHHHHHHHHHHCSSCEEEEECHHHHSC
T ss_pred HHHHHHhcCCCEEEEcC--CCC-----------CCCC------------CHHHHHHHHHHHHhhCCCCEEEEECchhhCc
Confidence 88889999999987642 321 10 0 111 256677888888999998664
Q ss_pred -cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 213 -LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 213 -~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
.+++...+ --.+-+|.-+. .++..+.++.+ .++++.|+ +|- ..-++.++.+||++++-+.+
T Consensus 138 ~l~~~~~~~--~pnIvgiKds~----------gd~~~~~~~~~-~~~~f~v~-~G~---d~~~~~~l~~G~~G~is~~a 199 (293)
T 1w3i_A 138 DIDAKVAKE--IGCFTGVKDTI----------ENIIHTLDYKR-LNPNMLVY-SGS---DMLIATVASTGLDGNVAAGS 199 (293)
T ss_dssp CCCHHHHHH--HCCEEEEEECC----------SCHHHHHHHHH-HCTTSEEE-ECC---STTHHHHHHTTCCEEECGGG
T ss_pred CCCHHHHHh--cCCEEEEEeCC----------CCHHHHHHHHh-cCCCEEEE-Ecc---HHHHHHHHHcCCCEEEeCHH
Confidence 35666655 22233333321 12444555555 54466654 442 13466788999999998875
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.27 Score=45.10 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.++++++.+++||++-+ +.+++++..++++|||+|.+.
T Consensus 230 ~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg 270 (311)
T 1ep3_A 230 LKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVG 270 (311)
T ss_dssp HHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 4778899988899988654 679999999999999999884
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=93.99 E-value=0.28 Score=47.22 Aligned_cols=127 Identities=12% Similarity=0.009 Sum_probs=85.5
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|++++-+ +..+..+.. .+ ..+.+. .+.++.+|+.+ +.+|.+
T Consensus 124 ~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~~---------~~----------~~~~~~d~e~v~avR~avG~d~~L~v 183 (405)
T 3rr1_A 124 DRPADVIAGMKALQAGGFDHFKL-NGCEEMGII---------DT----------SRAVDAAVARVAEIRSAFGNTVEFGL 183 (405)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSCB---------CS----------HHHHHHHHHHHHHHHHTTGGGSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-ecCCccccc---------cc----------chhHHHHHHHHHHHHHHhCCCceEEE
Confidence 56777888888888899999988 655321000 00 001112 46688889887 578887
Q ss_pred EEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
..- -+.++| +.+.+.|++.|-= ...+..++.+.++++.+ ++||++++.+.+..|+.++++.| +
T Consensus 184 DaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa~dE~i~~~~~~~~~l~~~a~ 253 (405)
T 3rr1_A 184 DFHGRVSAPMAKVLIKELEPYRPLFIEE--------PVLAEQAETYARLAAHT--HLPIAAGERMFSRFDFKRVLEAGGV 253 (405)
T ss_dssp ECCSCBCHHHHHHHHHHHGGGCCSCEEC--------SSCCSSTHHHHHHHTTC--SSCEEECTTCCSHHHHHHHHHHCCC
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhcC--CCCEEecCCcCCHHHHHHHHHHhCC
Confidence 642 355554 5566778877731 01122456677777665 79999999999999999999976 7
Q ss_pred CEEEEch
Q 018919 283 SGIFIGR 289 (349)
Q Consensus 283 ~~V~ig~ 289 (349)
|.|++--
T Consensus 254 d~v~~d~ 260 (405)
T 3rr1_A 254 SILQPDL 260 (405)
T ss_dssp SEECCBT
T ss_pred CeEEECh
Confidence 9998854
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=93.99 E-value=2.7 Score=39.54 Aligned_cols=234 Identities=14% Similarity=0.106 Sum_probs=116.6
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCe-----EE-ecCCCCCCHHHHHhh-C---CCceEEEEee--cCChhHH
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTI-----MT-LSSWSTSSVEEVAST-G---PGIRFFQLYV--YKDRNVV 138 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~-----~~-~~~~~~~~~e~i~~~-~---~~~~~~Ql~~--~~~~~~~ 138 (349)
..|++||=+|..--.+-+.-..|.++|+++|.. .+ +-++ ..+++... . .+..+++.|. .-..+..
T Consensus 4 ~~~~IIAEig~NHnGdle~Ak~lI~~A~~aGad~~~d~avKfQt~---~~d~l~~~~~~~~~~~~~~~~~~~~el~~e~~ 80 (350)
T 3g8r_A 4 SKPLFIFEMANNHMGNVEHGVALIRAIRESCQGFDFDFGFKLQYR---NLDTFIHSSFKGRDDVKYVKRFEETRLQPEQM 80 (350)
T ss_dssp -CCEEEEECTTTTTTCSHHHHHHHHHHHHHTTTCCSEEEEEEEEC---CHHHHBCGGGTTCCSSSSHHHHHHTCCCHHHH
T ss_pred CCCEEEEEECCCccCcHHHHHHHHHHHHHhCCcccCCeeEEcccc---chhhhcChhccCccHHHHHHHHHHhcCCHHHH
Confidence 469999999764332333335688889999874 22 2222 23333211 0 1111222221 1234556
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~ 216 (349)
..+.+.+++.|...+.--.| .+.-|+-..+.+|- ++..++ -..+..|+++.+ ++.||++|.- .+.+
T Consensus 81 ~~L~~~~~~~Gi~~~st~fD-----~~svd~l~~~~v~~~KI~S~~------~~N~pLL~~va~-~gKPviLstGmstl~ 148 (350)
T 3g8r_A 81 QKLVAEMKANGFKAICTPFD-----EESVDLIEAHGIEIIKIASCS------FTDWPLLERIAR-SDKPVVASTAGARRE 148 (350)
T ss_dssp HHHHHHHHHTTCEEEEEECS-----HHHHHHHHHTTCCEEEECSSS------TTCHHHHHHHHT-SCSCEEEECTTCCHH
T ss_pred HHHHHHHHHcCCcEEeccCC-----HHHHHHHHHcCCCEEEECccc------ccCHHHHHHHHh-hCCcEEEECCCCCHH
Confidence 66777777888877642222 12222323332221 111111 111567888775 6999999975 4666
Q ss_pred HHHHH----HHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEe----cCCCCHHHHHHHHHhCCCEEEEc
Q 018919 217 DARIA----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD----GGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 217 ~a~~a----~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~----GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+...+ .+.|.+.+.+....+.........+..++.+++..+ ++||..+ |+. . .-++.|.++||+ +|=
T Consensus 149 Ei~~Ave~i~~~g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp-~lpVG~SdHt~g~~-~-~~~~AAvAlGA~--vIE 223 (350)
T 3g8r_A 149 DIDKVVSFMLHRGKDLTIMHCVAEYPTPDDHLHLARIKTLRQQYA-GVRIGYSTHEDPDL-M-EPIMLAVAQGAT--VFE 223 (350)
T ss_dssp HHHHHHHHHHTTTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCT-TSEEEEEECCCSSC-C-HHHHHHHHTTCC--EEE
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCcccCCHHHHHHHHHHCC-CCCEEcCCCCCCCc-c-HHHHHHHHcCCC--EEE
Confidence 65444 346777555432211111111124566777776652 5888666 322 2 234578999997 444
Q ss_pred hHHHHHH--hhcCHHH-HHHHHHHHHHHHHHHHHHcCCC
Q 018919 289 RPVVYSL--AAEGEKG-VRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 289 ~~~l~~~--~~~G~~g-v~~~l~~l~~el~~~m~~~G~~ 324 (349)
+-|--.- ...+... --+-++.+.++++..-..+|..
T Consensus 224 kH~tldr~~g~D~~~Sl~P~ef~~lv~~ir~i~~alG~~ 262 (350)
T 3g8r_A 224 KHVGLPTDQYGINNYSANPEQVRRWLAAAARALAMLGDG 262 (350)
T ss_dssp EEBCCCBTTBCCCTTCBCHHHHHHHHHHHHHHHHHHCCT
T ss_pred EecCcccCCCCcccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 3221100 0011100 0123556666777777777753
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.25 Score=45.87 Aligned_cols=91 Identities=12% Similarity=0.185 Sum_probs=58.9
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-..-.+.+..+++.+ +++|||+.=|=.+-.++++ |-++|||++++-.|+.
T Consensus 35 v~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~~ 113 (313)
T 3dz1_A 35 TDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPPS 113 (313)
T ss_dssp HHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTT
T ss_pred HHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45577899999999665331100 1111235566666777 7899998766566666664 3348999999999984
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~e 313 (349)
+ ..++++.++++.+.+.
T Consensus 114 ~----~s~~~l~~~f~~va~a 130 (313)
T 3dz1_A 114 L----RTDEQITTYFRQATEA 130 (313)
T ss_dssp C----CSHHHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHHHHHh
Confidence 3 2466666666655554
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.2 Score=47.42 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=49.1
Q ss_pred HHHHHHHHc--CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 216 EDARIAVQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 216 ~~a~~a~~~--G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+.+..+.+. |+|.+.++...| .....++.+.++++..+ ++||++ |++.+.+|+.++..+|||+|.++
T Consensus 121 ~~~~~l~~~~~g~~~i~i~~~~g----~~~~~~~~i~~lr~~~~-~~~vi~-g~v~t~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 121 EQLEQILEAIPQVKYICLDVANG----YSEHFVEFVKDVRKRFP-QHTIMA-GNVVTGEMVEELILSGADIIKVG 189 (351)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCT----TBHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhccCCCCEEEEEecCC----CcHHHHHHHHHHHHhcC-CCeEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 445566666 999988863322 12335677888877653 588885 67899999999999999999885
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.33 Score=45.67 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=60.7
Q ss_pred ceEEEEeec---CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHH
Q 018919 124 IRFFQLYVY---KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQ 200 (349)
Q Consensus 124 ~~~~Ql~~~---~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~ 200 (349)
|..+|--.+ .|.+.+.+.++++.++|++.+-+++... +..+.++.++
T Consensus 31 Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRvavp~~------------------------------~~a~al~~I~ 80 (366)
T 3noy_A 31 PIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHK------------------------------EDVEALEEIV 80 (366)
T ss_dssp CCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEECCSH------------------------------HHHHHHHHHH
T ss_pred cEEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCh------------------------------HHHHHHHHHH
Confidence 445554332 3566788889999999999998876321 1146799999
Q ss_pred HhcCCcEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 201 TITKLPILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 201 ~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+.+++|+++=.-.++..|..|+++|+|.+.+.
T Consensus 81 ~~~~vPlvaDiHf~~~lal~a~e~G~dklRIN 112 (366)
T 3noy_A 81 KKSPMPVIADIHFAPSYAFLSMEKGVHGIRIN 112 (366)
T ss_dssp HHCSSCEEEECCSCHHHHHHHHHTTCSEEEEC
T ss_pred hcCCCCEEEeCCCCHHHHHHHHHhCCCeEEEC
Confidence 99999999755589999999999999998773
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.32 Score=47.45 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=63.1
Q ss_pred Cc-eEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC---ch-HHHHH
Q 018919 123 GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG---KM-DEDVK 197 (349)
Q Consensus 123 ~~-~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~---~~-~~~i~ 197 (349)
.| .++.+-...+.+...+.++.++++|+++|.++-.+. .+. ++. .+. ....++..+ .. ++.++
T Consensus 297 ~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~---~~~-d~~-~~~-------~~~GGlSG~~~~~~sl~~i~ 364 (443)
T 1tv5_A 297 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTT---QIN-DIK-SFE-------NKKGGVSGAKLKDISTKFIC 364 (443)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBS---CCC-CCG-GGT-------TCCSEEEEHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCc---ccc-ccc-ccc-------cccCCcCCCcchHHHHHHHH
Confidence 35 677775544555677889999999999998754321 110 000 000 000000001 12 57799
Q ss_pred HHHHhc--CCcEEE-EEecCHHHHHHHHHcCCCEEEEe
Q 018919 198 WLQTIT--KLPILV-KGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 198 ~i~~~~--~~pv~v-K~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++++.+ ++||+. .++.+.++|.+++.+|||+|.+.
T Consensus 365 ~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aGAd~Vqig 402 (443)
T 1tv5_A 365 EMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLY 402 (443)
T ss_dssp HHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEES
T ss_pred HHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 999988 899864 45789999999999999999883
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=93.80 E-value=0.054 Score=50.11 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=56.6
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-....+.+..+++.+++++|||+.=|=.+-.++++ +-++|||+|++-.|++
T Consensus 31 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 110 (300)
T 3eb2_A 31 CDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAY 110 (300)
T ss_dssp HHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCS
T ss_pred HHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 34567899999988654331100 111123555666666677899887655555566554 3358999999999988
Q ss_pred HHHhhcCHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLR 311 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~ 311 (349)
+. -.++++.++++.+.
T Consensus 111 ~~---~~~~~l~~~f~~va 126 (300)
T 3eb2_A 111 FP---LKDAQIESYFRAIA 126 (300)
T ss_dssp SC---CCHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHH
Confidence 63 23555555544443
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.36 Score=46.24 Aligned_cols=117 Identities=12% Similarity=0.051 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHcCCCEEEE-ecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEEEe
Q 018919 137 VVAQLVRRAERAGFKAIAL-TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVKGV 212 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i-~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK~v 212 (349)
...+.++++.+.|++++-+ -++.+. .+++. .+.++.+|+.+ +.+|.+..-
T Consensus 155 ~~~~~a~~~~~~G~~~~K~~k~g~~~--------------------------~~~~~d~~~v~avR~a~G~d~~l~vDan 208 (394)
T 3mqt_A 155 AYKPLIAKAKERGAKAVKVCIIPNDK--------------------------VSDKEIVAYLRELREVIGWDMDMMVDCL 208 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCTT--------------------------SCHHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred HHHHHHHHHHHcCCCEEEecccCCCc--------------------------cCHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 3445667777889999877 343110 01222 56789999887 578887643
Q ss_pred --c-CHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCE
Q 018919 213 --L-TAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASG 284 (349)
Q Consensus 213 --~-~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~ 284 (349)
- +.++| +.+.+.|++.|-= ...+..++.+.++++.+ ++||++++.+.+..|+.++++.| +|.
T Consensus 209 ~~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~~~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~l~~~~~d~ 278 (394)
T 3mqt_A 209 YRWTDWQKARWTFRQLEDIDLYFIEA--------CLQHDDLIGHQKLAAAI--NTRLCGAEMSTTRFEAQEWLEKTGISV 278 (394)
T ss_dssp TCCSCHHHHHHHHHHTGGGCCSEEES--------CSCTTCHHHHHHHHHHS--SSEEEECTTCCHHHHHHHHHHHHCCSE
T ss_pred CCCCCHHHHHHHHHHHhhcCCeEEEC--------CCCcccHHHHHHHHhhC--CCCEEeCCCcCCHHHHHHHHHcCCCCe
Confidence 3 56654 4455678877731 11223567788888876 79999999999999999999975 899
Q ss_pred EEEch
Q 018919 285 IFIGR 289 (349)
Q Consensus 285 V~ig~ 289 (349)
|++--
T Consensus 279 v~~k~ 283 (394)
T 3mqt_A 279 VQSDY 283 (394)
T ss_dssp ECCCT
T ss_pred EecCc
Confidence 98853
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=93.78 E-value=1.4 Score=41.39 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
++.|.+.++..+++++. .+.+.+.+..+.+.|+|.+.|... ....+..|.++.+. +.|||.+-|..|-+
T Consensus 80 ~~~L~~~~~~~Gi~~~s-t~fD~~svd~l~~~~v~~~KI~S~-------~~~N~pLL~~va~~---gKPviLstGmstl~ 148 (350)
T 3g8r_A 80 MQKLVAEMKANGFKAIC-TPFDEESVDLIEAHGIEIIKIASC-------SFTDWPLLERIARS---DKPVVASTAGARRE 148 (350)
T ss_dssp HHHHHHHHHHTTCEEEE-EECSHHHHHHHHHTTCCEEEECSS-------STTCHHHHHHHHTS---CSCEEEECTTCCHH
T ss_pred HHHHHHHHHHcCCcEEe-ccCCHHHHHHHHHcCCCEEEECcc-------cccCHHHHHHHHhh---CCcEEEECCCCCHH
Confidence 45577777778999875 578899999999999999999532 12346677776642 78999999999999
Q ss_pred HHHHHHH----hCCCEEEE
Q 018919 273 DVFKALA----LGASGIFI 287 (349)
Q Consensus 273 dv~kal~----~GA~~V~i 287 (349)
++..|+. .|.+ |.+
T Consensus 149 Ei~~Ave~i~~~g~~-viL 166 (350)
T 3g8r_A 149 DIDKVVSFMLHRGKD-LTI 166 (350)
T ss_dssp HHHHHHHHHHTTTCC-EEE
T ss_pred HHHHHHHHHHHcCCC-EEE
Confidence 9988765 3666 444
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=93.78 E-value=0.29 Score=44.30 Aligned_cols=41 Identities=29% Similarity=0.283 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++++|+.+++||.+.+- .+++++..+..+|||+++|.+
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGS 235 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 57899999988999998774 569999999999999999954
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.74 Score=40.99 Aligned_cols=125 Identities=15% Similarity=0.107 Sum_probs=79.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG- 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~- 211 (349)
...+.+.++.+++.+.|+.+++++-. +....++.-+..++.|..=.
T Consensus 40 ~t~~~i~~lc~eA~~~~~~aVcV~p~---------------------------------~v~~a~~~L~~s~v~v~tVig 86 (239)
T 3ngj_A 40 ATEEQIRKLCSEAAEYKFASVCVNPT---------------------------------WVPLCAELLKGTGVKVCTVIG 86 (239)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEECGG---------------------------------GHHHHHHHHTTSSCEEEEEES
T ss_pred CCHHHHHHHHHHHHhcCCcEEEECHH---------------------------------HHHHHHHHhCCCCCeEEEEec
Confidence 45667788888999999999986321 12222222222344443211
Q ss_pred e----cC----HHHHHHHHHcCCCEEEEe-cCCCCCCCCc-hhhHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHH---
Q 018919 212 V----LT----AEDARIAVQAGAAGIIVS-NHGARQLDYV-PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKA--- 277 (349)
Q Consensus 212 v----~~----~~~a~~a~~~G~d~I~v~-~~gg~~~~~~-~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~dv~ka--- 277 (349)
. .+ ..+++.|++.|||.|.+. |.|. -.++. ..-.+.+..+++++++ -++||..-|.-+.+.+.++
T Consensus 87 FP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~-lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~a~~i 165 (239)
T 3ngj_A 87 FPLGATPSEVKAYETKVAVEQGAEEVDMVINIGM-VKAKKYDDVEKDVKAVVDASGKALTKVIIECCYLTNEEKVEVCKR 165 (239)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHH-HHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGSCHHHHHHHHHH
T ss_pred cCCCCCchHHHHHHHHHHHHcCCCEEEEEeehHH-hccccHHHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHH
Confidence 0 11 257889999999999975 3331 01111 1134566677777643 3788888888898999888
Q ss_pred -HHhCCCEEEEchHH
Q 018919 278 -LALGASGIFIGRPV 291 (349)
Q Consensus 278 -l~~GA~~V~ig~~~ 291 (349)
..+|||+|=..+-|
T Consensus 166 a~~aGADfVKTSTGf 180 (239)
T 3ngj_A 166 CVAAGAEYVKTSTGF 180 (239)
T ss_dssp HHHHTCSEEECCCSS
T ss_pred HHHHCcCEEECCCCC
Confidence 77899999988755
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.21 Score=45.75 Aligned_cols=70 Identities=30% Similarity=0.410 Sum_probs=52.7
Q ss_pred ecCHHHHHHHHHcCCCEEEEecC---CCCCCCCchhhHHHHHHHHHHhcCCCcEEEe-----cCCCCH--------HHHH
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLD-----GGVRRG--------TDVF 275 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~---gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~-----GGI~~~--------~dv~ 275 (349)
+.+.+++..|.+.|||.|-+-.. ||. .|+...+..+++.+ ++||.+- |+.... +|+.
T Consensus 46 ~~s~~~a~~A~~gGAdRIELc~~l~~GGl-----TPS~g~i~~a~~~~--~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~ 118 (287)
T 3iwp_A 46 VDSVESAVNAERGGADRIELCSGLSEGGT-----TPSMGVLQVVKQSV--QIPVFVMIRPRGGDFLYSDREIEVMKADIR 118 (287)
T ss_dssp ESSHHHHHHHHHHTCSEEEECBCGGGTCB-----CCCHHHHHHHHTTC--CSCEEEECCSSSSCSCCCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHhCCCEEEECCCCCCCCC-----CCCHHHHHHHHHhc--CCCeEEEEecCCCCcccCHHHHHHHHHHHH
Confidence 37899999999999999998532 332 34556666666655 6888874 334333 7999
Q ss_pred HHHHhCCCEEEEc
Q 018919 276 KALALGASGIFIG 288 (349)
Q Consensus 276 kal~~GA~~V~ig 288 (349)
.+.++|||+|.+|
T Consensus 119 ~~~~~GAdGvVfG 131 (287)
T 3iwp_A 119 LAKLYGADGLVFG 131 (287)
T ss_dssp HHHHTTCSEEEEC
T ss_pred HHHHcCCCEEEEe
Confidence 9999999999999
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.29 Score=47.44 Aligned_cols=141 Identities=12% Similarity=-0.008 Sum_probs=88.5
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcC------CCCcCcccccCCCCC----Cch-HHHHHHHHH
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT------LPPFLTLKNFQGLDL----GKM-DEDVKWLQT 201 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~------~p~~~~~~~~~~~~~----~~~-~~~i~~i~~ 201 (349)
.+++.+.+.++++.+.|++++-+.++.|..... .+.. .|..-..+.. ...+ .+. .+.++.+|+
T Consensus 149 ~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~~-----~g~~~~~~~~~~~~~~~p~~-~~~d~~~~~~~d~e~v~avR~ 222 (425)
T 3vcn_A 149 ETIEDTIAEAVKYKAMGYKAIRLQTGVPGLAST-----YGVSKDKMFYEPADNDLPTE-NIWSTAKYLNSVPKLFERARE 222 (425)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEEECCTTCSCC-----TTCSSCSSCCCCCCBSSCCE-EEECHHHHHTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecCcccccc-----ccccccccccCccccccccc-ccccchhHHHHHHHHHHHHHH
Confidence 567778888888888999999888875310000 0000 0000000000 0000 112 577999999
Q ss_pred hc--CCcEEEEEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 018919 202 IT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 202 ~~--~~pv~vK~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 273 (349)
.+ +.+|.+..- -+.++| +.+.+.|++.|--- ..+..++.+.++++.+ ++||++++.+.+..|
T Consensus 223 a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~ 292 (425)
T 3vcn_A 223 VLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLEDS--------VPAENQAGFRLIRQHT--TTPLAVGEIFAHVWD 292 (425)
T ss_dssp HHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC--------SCCSSTTHHHHHHHHC--CSCEEECTTCCSGGG
T ss_pred HcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CChhhHHHHHHHHhcC--CCCEEeCCCcCCHHH
Confidence 87 578887642 355554 55667888877410 1122455677777776 799999999999999
Q ss_pred HHHHHHhC-CCEEEEch
Q 018919 274 VFKALALG-ASGIFIGR 289 (349)
Q Consensus 274 v~kal~~G-A~~V~ig~ 289 (349)
+.++++.| +|.|++--
T Consensus 293 ~~~~i~~~a~d~v~~k~ 309 (425)
T 3vcn_A 293 AKQLIEEQLIDYLRATV 309 (425)
T ss_dssp THHHHHTTCCSEECCCT
T ss_pred HHHHHHcCCCCeEecCh
Confidence 99999987 79998864
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=93.75 E-value=1.8 Score=41.11 Aligned_cols=121 Identities=17% Similarity=0.090 Sum_probs=83.0
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK 210 (349)
.+++...+.++++.+.|+..+-+.++.. +.+. .+.++.+|+.+ ++++.+.
T Consensus 147 ~~~~~~~~~a~~~~~~G~~~~K~Kvg~~----------------------------~~~~d~~~v~avR~a~~~~~l~vD 198 (385)
T 3i6e_A 147 PDFDADIALMERLRADGVGLIKLKTGFR----------------------------DHAFDIMRLELIARDFPEFRVRVD 198 (385)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEEEECSSS----------------------------CHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC----------------------------CHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4566666667777778999998877531 1111 46688888886 5678775
Q ss_pred Ee--cCH----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CC
Q 018919 211 GV--LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-AS 283 (349)
Q Consensus 211 ~v--~~~----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~ 283 (349)
.- -+. +.++.+.+.|++.|- + ...+..++.+.++++.. .+||+++.-+.+..|+.+++..| +|
T Consensus 199 an~~~~~~~A~~~~~~L~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~~~~~~~d 268 (385)
T 3i6e_A 199 YNQGLEIDEAVPRVLDVAQFQPDFIE-------Q-PVRAHHFELMARLRGLT--DVPLLADESVYGPEDMVRAAHEGICD 268 (385)
T ss_dssp CTTCCCGGGHHHHHHHHHTTCCSCEE-------C-CSCTTCHHHHHHHHTTC--SSCEEESTTCCSHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEE-------C-CCCcccHHHHHHHHHhC--CCCEEEeCCcCCHHHHHHHHHcCCCC
Confidence 32 233 345666777877763 1 11223467777777655 79999999999999999999876 79
Q ss_pred EEEEchHH
Q 018919 284 GIFIGRPV 291 (349)
Q Consensus 284 ~V~ig~~~ 291 (349)
.|++--..
T Consensus 269 ~v~~k~~~ 276 (385)
T 3i6e_A 269 GVSIKIMK 276 (385)
T ss_dssp EEEECHHH
T ss_pred EEEecccc
Confidence 99887544
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.19 Score=47.37 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=53.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 293 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l~ 293 (349)
++.+++.|+|+|++.++.|-...-...-...+-+. .+.+++|||+.-|=.+-.++++ |-++|||+|++-.|+++
T Consensus 53 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~--~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~ 130 (344)
T 2hmc_A 53 GKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVER--LVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLS 130 (344)
T ss_dssp HHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHH--HHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSS
T ss_pred HHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHH--HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccC
Confidence 45577899999999665331110111112222222 3446899987766556566654 33489999999999876
Q ss_pred H-HhhcCHHHHHHHHHHHHH
Q 018919 294 S-LAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 294 ~-~~~~G~~gv~~~l~~l~~ 312 (349)
. . .++++.++++.+.+
T Consensus 131 ~~~---s~~~l~~~f~~IA~ 147 (344)
T 2hmc_A 131 RGS---VIAAQKAHFKAILS 147 (344)
T ss_dssp STT---CHHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 3 2 35555555554443
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.73 Score=40.02 Aligned_cols=111 Identities=17% Similarity=0.082 Sum_probs=66.8
Q ss_pred HHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcC
Q 018919 95 RAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174 (349)
Q Consensus 95 ~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~ 174 (349)
..+.+.|+.++.-.....+.+++++..++ .++-+-. .+. +.++++.+.|++.+.+.--.+.
T Consensus 82 ~~a~~~gad~v~l~~~~~~~~~~~~~~~~-~~ig~sv-~t~----~~~~~a~~~gaD~i~~~~~f~~------------- 142 (221)
T 1yad_A 82 DIALFSTIHRVQLPSGSFSPKQIRARFPH-LHIGRSV-HSL----EEAVQAEKEDADYVLFGHVFET------------- 142 (221)
T ss_dssp HHHHTTTCCEEEECTTSCCHHHHHHHCTT-CEEEEEE-CSH----HHHHHHHHTTCSEEEEECCC---------------
T ss_pred HHHHHcCCCEEEeCCCccCHHHHHHHCCC-CEEEEEc-CCH----HHHHHHHhCCCCEEEECCcccc-------------
Confidence 45666777665322333456666665542 2222211 232 3456777899999876321000
Q ss_pred CCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEec
Q 018919 175 LPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
+. .+. .+.+ |+.++++++..++|+++=+-.+++++..+.++|+|+|.++.
T Consensus 143 -~~---~~g-----~~~~~~~~l~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs 193 (221)
T 1yad_A 143 -DC---KKG-----LEGRGVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAVMS 193 (221)
T ss_dssp -----------------CHHHHHHHHHHHCCSCEEEESSCCGGGHHHHHHTTCSEEEESH
T ss_pred -CC---CCC-----CCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEhH
Confidence 00 000 0123 88899998888999887665599999999999999999853
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=93.71 E-value=1.2 Score=40.10 Aligned_cols=188 Identities=17% Similarity=0.134 Sum_probs=0.0
Q ss_pred eecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC-------------------CHHHHHhhCCCceEEEE-eecCC
Q 018919 75 MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-------------------SVEEVASTGPGIRFFQL-YVYKD 134 (349)
Q Consensus 75 ~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~-------------------~~e~i~~~~~~~~~~Ql-~~~~~ 134 (349)
++.|..+ |...|+.+.+.|+..++.+.++. ..+.|.+..+-+...-+ ++..+
T Consensus 22 i~~~~ay--------D~~sA~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~~~pviaD~~~Gyg~ 93 (255)
T 2qiw_A 22 LVLPTVW--------DTWSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAVSIPVSVDVESGYGL 93 (255)
T ss_dssp EECCEES--------SHHHHHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHCSSCEEEECTTCTTC
T ss_pred EEEecCc--------CHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcCCCCEEeccCCCcCc
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc---CCcEEEE
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT---KLPILVK 210 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~---~~pv~vK 210 (349)
.. .+.++++.++|+.++-|-=.....+.. +.+.+. .+.|+.+++.. ++|+.+-
T Consensus 94 ~~--~~~~~~l~~aGa~gv~iEd~~~~~~k~---------------------l~~~~e~~~~I~a~~~a~~~~g~~~~v~ 150 (255)
T 2qiw_A 94 SP--ADLIAQILEAGAVGINVEDVVHSEGKR---------------------VREAQEHADYIAAARQAADVAGVDVVIN 150 (255)
T ss_dssp CH--HHHHHHHHHTTCCEEEECSEEGGGTTE---------------------ECCHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred HH--HHHHHHHHHcCCcEEEECCCCCCCCCc---------------------ccCHHHHHHHHHHHHHHHHhcCCCeEEE
Q ss_pred EecCHH----------------HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH---
Q 018919 211 GVLTAE----------------DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG--- 271 (349)
Q Consensus 211 ~v~~~~----------------~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~--- 271 (349)
...... .++...++|||.|.+ -+.++.+.+.++.+.+ ++|+....+ ..+
T Consensus 151 aRtd~~~~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~---------e~~~~~~~~~~i~~~~--~~P~n~~~~-~~~~~p 218 (255)
T 2qiw_A 151 GRTDAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYP---------VGLSTAEQVERLVDAV--SVPVNITAH-PVDGHG 218 (255)
T ss_dssp EEECHHHHCTTTSSSHHHHHHHHHHHHHHHTCSEEEE---------CCCCSHHHHHHHHTTC--SSCBEEECB-TTTBBT
T ss_pred EEechhhccCCcchHHHHHHHHHHHHHHHcCCcEEEE---------cCCCCHHHHHHHHHhC--CCCEEEEec-CCCCCC
Q ss_pred -HHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHH
Q 018919 272 -TDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 272 -~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~e 313 (349)
-.+.+.-++|.+.|..|.. .+ ..+.+.++.++++
T Consensus 219 ~~~~~eL~~lGv~~v~~~~~-a~-------~a~~~~~~~i~~~ 253 (255)
T 2qiw_A 219 AGDLATLAGLGVRRVTFGPL-WQ-------KWLAATSAQQLKG 253 (255)
T ss_dssp TBCHHHHHHTTCCEEECTTH-HH-------HHHHHHHHHHHGG
T ss_pred CCCHHHHHHcCCCEEEEHHH-HH-------HHHHHHHHHHHhc
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.23 Score=45.51 Aligned_cols=78 Identities=24% Similarity=0.293 Sum_probs=57.2
Q ss_pred hcCCcEEEEEecCHHHHHHHHHcCCCEEEEec--------CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 018919 202 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSN--------HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 202 ~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~--------~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 273 (349)
..+.|+++ .+...+.++.+.++|+++|.+.. .+|.. .....+.+.++++.+ ++|++...++.+.++
T Consensus 19 ~~~~~~i~-~~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~---~~~~~~~i~~i~~~~--~~Pvi~~~~~~~~~~ 92 (297)
T 2zbt_A 19 MFKGGVIM-DVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVA---RMSDPKIIKEIMAAV--SIPVMAKVRIGHFVE 92 (297)
T ss_dssp GGTTEEEE-EESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCC---CCCCHHHHHHHHTTC--SSCEEEEEETTCHHH
T ss_pred HhhCCeee-eechHHHHHHHHHCCCcEEEeccccchHHHhhcCCc---cCCCHHHHHHHHHhc--CCCeEEEeccCCHHH
Confidence 34668776 56678999999999999998721 11110 122356677776655 789999888888888
Q ss_pred HHHHHHhCCCEE
Q 018919 274 VFKALALGASGI 285 (349)
Q Consensus 274 v~kal~~GA~~V 285 (349)
+..++++|||+|
T Consensus 93 ~~~~~~aGad~v 104 (297)
T 2zbt_A 93 AMILEAIGVDFI 104 (297)
T ss_dssp HHHHHHTTCSEE
T ss_pred HHHHHHCCCCEE
Confidence 888999999999
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.24 Score=47.90 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=63.5
Q ss_pred Cc-eEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHH
Q 018919 123 GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQ 200 (349)
Q Consensus 123 ~~-~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~ 200 (349)
.| .++.|-+.-+.+.+.+.++.++++|+++|.++= +.. .|. |+...-....++ +|.-.... ++.|++++
T Consensus 269 ~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~N-tt~--~r~-dl~~~~~~~GGl-----SG~a~~p~al~~I~~v~ 339 (415)
T 3i65_A 269 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISN-TTT--QIN-DIKSFENKKGGV-----SGAKLKDISTKFICEMY 339 (415)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECC-CBS--CCC-CCGGGTTCCSEE-----EEGGGHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeC-CCc--ccc-cccccccccCCc-----CCccchHHHHHHHHHHH
Confidence 45 678886655555678899999999999997642 211 111 010000000000 00000112 57799999
Q ss_pred Hhc--CCcEEE-EEecCHHHHHHHHHcCCCEEEEe
Q 018919 201 TIT--KLPILV-KGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 201 ~~~--~~pv~v-K~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+.+ ++||+. .+|.+.++|.+++.+|||+|.+.
T Consensus 340 ~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIg 374 (415)
T 3i65_A 340 NYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLY 374 (415)
T ss_dssp HHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEES
T ss_pred HHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 988 699764 44789999999999999999984
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.14 Score=48.48 Aligned_cols=90 Identities=20% Similarity=0.262 Sum_probs=56.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++.++.|-... +-....+.+..+++.+++++|||+.=|=.+-.++++ |-++|||++++-.|++
T Consensus 86 v~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY 165 (360)
T 4dpp_A 86 VNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 165 (360)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 45677899999999665331110 111123455566666677899998655555666654 3347999999999987
Q ss_pred HHHhhcCHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEML 310 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l 310 (349)
+. -.++++.++++.+
T Consensus 166 ~k---~sq~gl~~hf~~I 180 (360)
T 4dpp_A 166 GK---TSIEGLIAHFQSV 180 (360)
T ss_dssp SC---CCHHHHHHHHHTT
T ss_pred CC---CCHHHHHHHHHHH
Confidence 53 2345555554444
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.1 Score=48.05 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=50.4
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+|+|++.++.|-...-. ....+.+..+++.+++++|||+.-|=.+-.++++ +-++|||++++-.|++
T Consensus 28 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 107 (291)
T 3a5f_A 28 IEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYY 107 (291)
T ss_dssp HHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 4556789999999976544211111 1123455556666667899987766666666654 3347999999999987
Q ss_pred H
Q 018919 293 Y 293 (349)
Q Consensus 293 ~ 293 (349)
+
T Consensus 108 ~ 108 (291)
T 3a5f_A 108 N 108 (291)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=2.2 Score=40.54 Aligned_cols=120 Identities=18% Similarity=0.078 Sum_probs=82.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|+..+-+.++. +++. .+.++.+|+.+ ++++.+
T Consensus 141 ~~~e~~~~~a~~~~~~Gf~~~KlK~g~-----------------------------~~~~d~~~v~avR~a~g~~~~L~v 191 (379)
T 3r0u_A 141 GNVAETIQNIQNGVEANFTAIKVKTGA-----------------------------DFNRDIQLLKALDNEFSKNIKFRF 191 (379)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECSS-----------------------------CHHHHHHHHHHHHHHCCTTSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeecCC-----------------------------CHHHHHHHHHHHHHhcCCCCeEEE
Confidence 467777777777788899999887642 1112 46789999987 467777
Q ss_pred EEe--cCHHHH----HHHHH--cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC
Q 018919 210 KGV--LTAEDA----RIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 210 K~v--~~~~~a----~~a~~--~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G 281 (349)
..- -+.++| +.+.+ .+++.|- + ...+..++.+.++++.. .+||.++.-+.+..|+.+++..|
T Consensus 192 DaN~~w~~~~A~~~~~~l~~~~~~l~~iE-------e-P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~ 261 (379)
T 3r0u_A 192 DANQGWNLAQTKQFIEEINKYSLNVEIIE-------Q-PVKYYDIKAMAEITKFS--NIPVVADESVFDAKDAERVIDEQ 261 (379)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSCCCEEEEE-------C-CSCTTCHHHHHHHHHHC--SSCEEESTTCSSHHHHHHHHHTT
T ss_pred eCCCCcCHHHHHHHHHHHhhcCCCcEEEE-------C-CCCcccHHHHHHHHhcC--CCCEEeCCccCCHHHHHHHHHcC
Confidence 532 355555 44445 3433331 1 11223467788888776 79999999999999999999987
Q ss_pred -CCEEEEchHH
Q 018919 282 -ASGIFIGRPV 291 (349)
Q Consensus 282 -A~~V~ig~~~ 291 (349)
+|.|++--..
T Consensus 262 a~d~v~~k~~~ 272 (379)
T 3r0u_A 262 ACNMINIKLAK 272 (379)
T ss_dssp CCSEEEECHHH
T ss_pred CCCEEEECccc
Confidence 6999986544
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=93.59 E-value=0.3 Score=47.29 Aligned_cols=143 Identities=15% Similarity=0.089 Sum_probs=88.1
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCC----CchhHHhhhhcCCCCcCcccccCCCCC----Cch-HHHHHHHHHhc
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRL----GRREADIKNRFTLPPFLTLKNFQGLDL----GKM-DEDVKWLQTIT 203 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~----g~r~~d~~~~~~~p~~~~~~~~~~~~~----~~~-~~~i~~i~~~~ 203 (349)
.+++.+.+.++++.+.|++++-+.++.|.. |.... ...+ .|..-..+.. ...+ .+. .+.++.+|+.+
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKlKvG~~~~~~~~g~~~~--~~~~-~~~~~~~p~~-~~~d~~~~~~~d~e~v~avR~av 223 (424)
T 3v3w_A 148 KDLDSTLEAVRKAKDKGYKAIRVQCGIPGIAKTYGVSTN--TKSY-EPADADLPSV-EVWSTEKYLNYIPDVFAAVRKEF 223 (424)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEEECCTTCSCCTTCC-------C-CSCCBSSCCE-EEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccCcccccccccccc--cccc-cccccccccc-ccccchhHHHHHHHHHHHHHHHc
Confidence 567778888888888999999988875310 00000 0000 0000000000 0000 112 46689999987
Q ss_pred --CCcEEEEEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 018919 204 --KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 204 --~~pv~vK~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 275 (349)
+.+|.+..- -+.++| +.+.+.|++.|-=- ..+..++.+.++++.+ .+||++++.+.+..|+.
T Consensus 224 G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~ 293 (424)
T 3v3w_A 224 GPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWMEDA--------VPAENQESFKLIRQHT--TTPLAVGEVFNSIHDCR 293 (424)
T ss_dssp CSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC--------SCCSSTTHHHHHHHHC--CSCEEECTTCCSGGGTH
T ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEECC--------CChHhHHHHHHHHhhC--CCCEEEccCcCCHHHHH
Confidence 578887642 345554 55667888877410 1122456677777776 79999999999999999
Q ss_pred HHHHhC-CCEEEEch
Q 018919 276 KALALG-ASGIFIGR 289 (349)
Q Consensus 276 kal~~G-A~~V~ig~ 289 (349)
++++.| +|.|++--
T Consensus 294 ~~i~~ga~d~v~~k~ 308 (424)
T 3v3w_A 294 ELIQNQWIDYIRTTI 308 (424)
T ss_dssp HHHHTTCCSEECCCT
T ss_pred HHHHcCCCCeEeecc
Confidence 999987 79998864
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.59 Score=42.76 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=77.6
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG- 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~- 211 (349)
...+.+.++.+.+.+.|+.+++++-. +....++..+..+++|..=.
T Consensus 71 ~T~~dI~~lc~eA~~~g~aaVCV~P~---------------------------------~V~~a~~~L~~s~V~V~tVig 117 (288)
T 3oa3_A 71 ATGSQIDVLCAEAKEYGFATVCVRPD---------------------------------YVSRAVQYLQGTQVGVTCVIG 117 (288)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEECGG---------------------------------GHHHHHHHTTTSSCEEEEEES
T ss_pred CCHHHHHHHHHHHHhcCCcEEEECHH---------------------------------HHHHHHHHcCCCCCeEEEEeC
Confidence 34566778888888999999987421 11222222222345543211
Q ss_pred e----cC----HHHHHHHHHcCCCEEEEe-cCCCCCCCC-chhhHHHHHHHHHHhcCC-CcEEEecCCCCHHHHHH----
Q 018919 212 V----LT----AEDARIAVQAGAAGIIVS-NHGARQLDY-VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFK---- 276 (349)
Q Consensus 212 v----~~----~~~a~~a~~~G~d~I~v~-~~gg~~~~~-~~~~~~~l~~i~~~~~~~-ipvia~GGI~~~~dv~k---- 276 (349)
. .+ ..+++.|++.|||.|.+. |.|.. .++ .....+.+..++++++.. +.||..-|.-+.+++.+
T Consensus 118 FP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmVINig~l-k~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~A~~i 196 (288)
T 3oa3_A 118 FHEGTYSTDQKVSEAKRAMQNGASELDMVMNYPWL-SEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIAGCVL 196 (288)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTTCSEEEEECCHHHH-HTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEEEeehhhh-cCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHHHHHH
Confidence 1 11 257889999999999864 32221 111 122346677777776543 78899988889888665
Q ss_pred HHHhCCCEEEEchHH
Q 018919 277 ALALGASGIFIGRPV 291 (349)
Q Consensus 277 al~~GA~~V~ig~~~ 291 (349)
+.++|||+|--.+-|
T Consensus 197 a~eaGADfVKTSTGf 211 (288)
T 3oa3_A 197 SSLAGADYVKTSTGF 211 (288)
T ss_dssp HHHTTCSEEECCCSS
T ss_pred HHHcCCCEEEcCCCC
Confidence 445899999887644
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.75 Score=42.86 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCCeEEecCCCC--CCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHH
Q 018919 91 YATARAASAAGTIMTLSSWST--SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~--~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d 168 (349)
...++.+.+.|..++...... .-++.+++. ..+.++.+ .+ .+.++.+++.|+|+|.++ .+..|
T Consensus 78 ~~~~~~a~~~g~d~V~~~~g~p~~~i~~l~~~-g~~v~~~v---~~----~~~a~~~~~~GaD~i~v~--g~~~G----- 142 (332)
T 2z6i_A 78 EDIVDLVIEEGVKVVTTGAGNPSKYMERFHEA-GIIVIPVV---PS----VALAKRMEKIGADAVIAE--GMEAG----- 142 (332)
T ss_dssp HHHHHHHHHTTCSEEEECSSCGGGTHHHHHHT-TCEEEEEE---SS----HHHHHHHHHTTCSCEEEE--CTTSS-----
T ss_pred HHHHHHHHHCCCCEEEECCCChHHHHHHHHHc-CCeEEEEe---CC----HHHHHHHHHcCCCEEEEE--CCCCC-----
Confidence 356778888999877533321 112333332 23344443 22 345677888999998874 11111
Q ss_pred hhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 169 IKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+.. .....|+.++++++..++||++-+ +.+++++..++..|+|+|.++
T Consensus 143 ---G~~-------------g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~GAdgV~vG 191 (332)
T 2z6i_A 143 ---GHI-------------GKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLGAEAVQVG 191 (332)
T ss_dssp ---EEC-------------CSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred ---CCC-------------CCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEec
Confidence 000 011127889999998899988765 567999999999999999996
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=93.44 E-value=0.59 Score=44.70 Aligned_cols=117 Identities=10% Similarity=-0.027 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCCEEEE-ecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEEEe
Q 018919 137 VVAQLVRRAERAGFKAIAL-TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVKGV 212 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i-~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK~v 212 (349)
.+.+.++++.+.|++.+-+ -++.+. .+++. .+.++.+|+.+ +.++.+..-
T Consensus 160 ~~~~~a~~~~~~G~~~~K~~k~g~~~--------------------------~~~~~d~e~v~avR~a~G~d~~l~vDaN 213 (394)
T 3mkc_A 160 GYAPLLEKAKAHNIRAVKVCVPIKAD--------------------------WSTKEVAYYLRELRGILGHDTDMMVDYL 213 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTCC--------------------------CCHHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred HHHHHHHHHHHcCCCEEEeCccCCCc--------------------------cCHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence 3445667777889999877 343110 01222 56789999887 578887642
Q ss_pred --c-CHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCE
Q 018919 213 --L-TAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASG 284 (349)
Q Consensus 213 --~-~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~ 284 (349)
- +.++| +.+.+.|++.|-- ...+..++.+.++++.+ ++||++++.+.+..|+.++++.| +|.
T Consensus 214 ~~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~l~~~~~d~ 283 (394)
T 3mkc_A 214 YRFTDWYEVARLLNSIEDLELYFAEA--------TLQHDDLSGHAKLVENT--RSRICGAEMSTTRFEAEEWITKGKVHL 283 (394)
T ss_dssp TCCCCHHHHHHHHHHTGGGCCSEEES--------CSCTTCHHHHHHHHHHC--SSCBEECTTCCHHHHHHHHHHTTCCSE
T ss_pred CCCCCHHHHHHHHHHhhhcCCeEEEC--------CCCchhHHHHHHHHhhC--CCCEEeCCCCCCHHHHHHHHHcCCCCe
Confidence 3 56654 4455678877631 11223567778888776 79999999999999999999986 899
Q ss_pred EEEch
Q 018919 285 IFIGR 289 (349)
Q Consensus 285 V~ig~ 289 (349)
|++--
T Consensus 284 v~~k~ 288 (394)
T 3mkc_A 284 LQSDY 288 (394)
T ss_dssp ECCCT
T ss_pred EecCc
Confidence 99853
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=1.3 Score=41.17 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=75.4
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchhh----HHHHHHHHHHhcCCCcEEEec------------------
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPAT----IMALEEVVKATQGRIPVFLDG------------------ 266 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~~----~~~l~~i~~~~~~~ipvia~G------------------ 266 (349)
.+|++|.... +.|+|.+-++. ||-.... +.+. ++.|.+|.+.+ ++|++.=|
T Consensus 153 TdPeea~~Fv~~TgvD~LAvaiGt~HG~Yk~~-~~p~~~L~~~~L~~I~~~~--~vpLVlHGgSsvp~~~~~~~~~~gg~ 229 (323)
T 2isw_A 153 TEPQDAKKFVELTGVDALAVAIGTSHGAYKFK-SESDIRLAIDRVKTISDLT--GIPLVMHGSSSVPKDVKDMINKYGGK 229 (323)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCCC-C----CCCCHHHHHHHHHH--CSCEEECSCCCCCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHCCCEEEEecCccccccCCC-CCcccccCHHHHHHHHHHh--CCCeEEECCCCCCHHHHHHHHHhccc
Confidence 5688887766 69999999873 5544322 3333 68899999888 79999999
Q ss_pred -----CCCCHHHHHHHHHhCCCEEEEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 267 -----GVRRGTDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 267 -----GI~~~~dv~kal~~GA~~V~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
|+. -+++.+++.+|..-|=|+|-+-++... .. ..-+....+.+++.++..|..+|..
T Consensus 230 ~~~~~Gvp-~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs~ 304 (323)
T 2isw_A 230 MPDAVGVP-IESIVHAIGEGVCKINVDSDSRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSA 304 (323)
T ss_dssp CTTCBCCC-HHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred cccCCCCC-HHHHHHHHHCCCeEEEEChHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 443 378999999999999999976544321 11 1123344567777888888888864
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.26 Score=48.91 Aligned_cols=236 Identities=16% Similarity=0.170 Sum_probs=113.3
Q ss_pred HhhcccccccccccC-CCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH
Q 018919 40 RNAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (349)
Q Consensus 40 ~~~~~~~~l~p~~l~-~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i 117 (349)
-.+||++.|+|..-. ..+++|++|.+- ++++..||+.|||..++ |..||.+.++.|..+++. .++++|+.
T Consensus 59 GLTfDDVlLvP~~s~v~p~~Vdl~t~lt~~i~L~iPlvSA~MDTVT------e~~MAIamAr~GGiGvIH--~n~sie~Q 130 (556)
T 4af0_A 59 GLTYNDFLVLPGHINFPASDVSLQSKATKNIVLNTPFLSSPMDTVT------EDRMAIALALHGGLGIIH--HNCSAEEQ 130 (556)
T ss_dssp SCCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSCEEECCCTTTC------SHHHHHHHHHTTCEEEEC--CSSCHHHH
T ss_pred CCChhhEEEccCCCCCCcccceeeeeccCCcEeCCCEEecCccccc------CHHHHHHHHHCCCeEEEc--CCCCHHHH
Confidence 358999999998653 346899999995 79999999999997654 779999999999999995 44677764
Q ss_pred Hhh----CC-CceEEEEeecCChhH-HHHHHHHHHHcCCCEEEEecCCCCC----C-chhHHhhhh---------c----
Q 018919 118 AST----GP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRL----G-RREADIKNR---------F---- 173 (349)
Q Consensus 118 ~~~----~~-~~~~~Ql~~~~~~~~-~~~~~~~~~~~G~~~i~i~~d~p~~----g-~r~~d~~~~---------~---- 173 (349)
++. +. ...|+.=...-.++. +.+..+...+.+..++.++-+.... | ...||++.. +
T Consensus 131 a~~V~~VKr~e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~d~~~~V~evMT~~l 210 (556)
T 4af0_A 131 AAMVRRVKKYENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDAETPIKSVMTTEV 210 (556)
T ss_dssp HHHHHHHHHCCC--------------------------------------------------------------------
T ss_pred HHHHHHHHhcccCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccccccceEhhhhcccce
Confidence 321 11 111221000112333 3344444455566666554332110 1 011333211 0
Q ss_pred -CCCCcCcccccCC-----------CCCCch-H---HHHHHHHHhcCCc------------EEEEEecC---HHHHHHHH
Q 018919 174 -TLPPFLTLKNFQG-----------LDLGKM-D---EDVKWLQTITKLP------------ILVKGVLT---AEDARIAV 222 (349)
Q Consensus 174 -~~p~~~~~~~~~~-----------~~~~~~-~---~~i~~i~~~~~~p------------v~vK~v~~---~~~a~~a~ 222 (349)
..|.+.+...... ..|.+. + -.++.+.+...-| +.+-.-.+ .+-+..+.
T Consensus 211 vt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~~p~A~k~d~~grL~VgAAVgv~~d~~eR~~aLv 290 (556)
T 4af0_A 211 VTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQNYPYASKVPESKQLYCGAAIGTRPGDKDRLKLLA 290 (556)
T ss_dssp -----------------------------------------------CTTCCBCTTTCCBCCEEEECSSHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhhCCcchhcchhhceeeEEEeccCccHHHHHHHHH
Confidence 0011111100000 000000 0 0011111111111 11111122 35578889
Q ss_pred HcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 223 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 223 ~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
++|+|.|++...-|+ ....++.+..+++.. .+++|| .|.|.|++-+...+..|||+|-+|-
T Consensus 291 ~AGvD~iviD~ahGh----s~~v~~~i~~ik~~~-p~~~vi-aGNVaT~e~a~~Li~aGAD~vkVGi 351 (556)
T 4af0_A 291 EAGLDVVVLDSSQGN----SVYQIEFIKWIKQTY-PKIDVI-AGNVVTREQAAQLIAAGADGLRIGM 351 (556)
T ss_dssp HTTCCEEEECCSCCC----SHHHHHHHHHHHHHC-TTSEEE-EEEECSHHHHHHHHHHTCSEEEECS
T ss_pred hcCCcEEEEeccccc----cHHHHHHHHHHHhhC-CcceEE-eccccCHHHHHHHHHcCCCEEeecC
Confidence 999999999754332 233567788887765 367766 5779999999888889999998774
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.92 Score=40.95 Aligned_cols=117 Identities=17% Similarity=0.227 Sum_probs=79.5
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEE
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVK 210 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK 210 (349)
..|.+...+.++++.++|++++-...-.| |. .|- .+.|. ... ++.+++++++.++|++.
T Consensus 33 ~~~~e~a~~~a~~l~~~Ga~~vk~~~fkp----rt--------s~~-----~~~g~--~~egl~~l~~~~~~~Gl~~~t- 92 (262)
T 1zco_A 33 IESREQIMKVAEFLAEVGIKVLRGGAFKP----RT--------SPY-----SFQGY--GEKALRWMREAADEYGLVTVT- 92 (262)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEECBSSCC----CS--------STT-----SCCCC--THHHHHHHHHHHHHHTCEEEE-
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeccc----CC--------Ccc-----cccCc--cHHHHHHHHHHHHHcCCcEEE-
Confidence 35778889999999999999875433222 10 010 01111 122 56788888888999986
Q ss_pred EecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCC-CHHHHHHHHH
Q 018919 211 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR-RGTDVFKALA 279 (349)
Q Consensus 211 ~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~-~~~dv~kal~ 279 (349)
.+.+++.+..+.+. +|.+.+... . ......+.++.+ . +.||+..-|.. +.+++..|++
T Consensus 93 e~~d~~~~~~l~~~-vd~~kIga~---~----~~n~~ll~~~a~-~--~kPV~lk~G~~~t~~e~~~Av~ 151 (262)
T 1zco_A 93 EVMDTRHVELVAKY-SDILQIGAR---N----SQNFELLKEVGK-V--ENPVLLKRGMGNTIQELLYSAE 151 (262)
T ss_dssp ECCCGGGHHHHHHH-CSEEEECGG---G----TTCHHHHHHHTT-S--SSCEEEECCTTCCHHHHHHHHH
T ss_pred eeCCHHhHHHHHhh-CCEEEECcc---c----ccCHHHHHHHHh-c--CCcEEEecCCCCCHHHHHHHHH
Confidence 56788888889999 999999432 1 112445666554 2 79999999998 9999988774
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.83 Score=39.18 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
|+.++++++..++|+++-+-.+++++..+.++|+|+|.++.
T Consensus 151 ~~~l~~l~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs 191 (215)
T 1xi3_A 151 LEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVIS 191 (215)
T ss_dssp HHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESH
T ss_pred HHHHHHHHHhCCCCEEEECCcCHHHHHHHHHcCCCEEEEhH
Confidence 78899998888999988776669999999999999999853
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.75 Score=44.22 Aligned_cols=139 Identities=12% Similarity=0.019 Sum_probs=86.5
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC---ch-HHHHHHHHHhc--CCcE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG---KM-DEDVKWLQTIT--KLPI 207 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~---~~-~~~i~~i~~~~--~~pv 207 (349)
+++.+.+.++++.+.|++++-+.+..+..+. ......+...|.. +.. ..+. ++ .+.++.+|+.+ +.+|
T Consensus 143 ~~e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~-~~~~~pG~~~~~~---~~~--~~~~~~~~~~~e~v~avR~avG~d~~l 216 (409)
T 3go2_A 143 DLDGVKRTAEEARERQFRAIKTNIFIHDDGP-LHAWRPGFAVPFQ---PAL--NVDRKVLRNLRAHLEALRDGAGPDVEI 216 (409)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECCEECSSSS-CEECBGGGTBSCC---TTC--CCCHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccccccccc-ccccccCCCccCC---ccc--ccchHHHHHHHHHHHHHHHHhCCCCEE
Confidence 5677777888888899999988772211000 0000000000000 000 0011 12 46789999987 5788
Q ss_pred EEEEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC
Q 018919 208 LVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 208 ~vK~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G 281 (349)
.+..- -+.++| +.+.+.|++.|-.- ...++.+.++++.+ .+||++++.+.+..|+.++++.|
T Consensus 217 ~vDaN~~~~~~~A~~~~~~L~~~~i~~iE~P----------~~d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~ 284 (409)
T 3go2_A 217 LLDLNFNAKPEGYLKILRELADFDLFWVEID----------SYSPQGLAYVRNHS--PHPISSCETLFGIREFKPFFDAN 284 (409)
T ss_dssp EEECTTCSCHHHHHHHHHHTTTSCCSEEECC----------CSCHHHHHHHHHTC--SSCEEECTTCCHHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHhhcCCeEEEeC----------cCCHHHHHHHHhhC--CCCEEeCCCcCCHHHHHHHHHhC
Confidence 88642 355554 44556788877531 12567777887766 79999999999999999999987
Q ss_pred -CCEEEEchH
Q 018919 282 -ASGIFIGRP 290 (349)
Q Consensus 282 -A~~V~ig~~ 290 (349)
+|.|++--.
T Consensus 285 ~~d~v~~k~~ 294 (409)
T 3go2_A 285 AVDVAIVDTI 294 (409)
T ss_dssp CCSEEEECHH
T ss_pred CCCEEEeCCC
Confidence 799988653
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.69 Score=42.55 Aligned_cols=85 Identities=27% Similarity=0.287 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEec--------CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEe
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN--------HGARQLDYVPATIMALEEVVKATQGRIPVFLD 265 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~--------~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~ 265 (349)
...+.+.+..+.++++ .+...+.|+.+.++|+|+|.+-+ .+|. ......+.+.++++.+ ++||++
T Consensus 11 ~~~~~~~~~~~~g~i~-~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~---~~~~~~~~i~~I~~~~--~iPv~~- 83 (305)
T 2nv1_A 11 RVKRGMAEMQKGGVIM-DVINAEQAKIAEEAGAVAVMALERVPADIRAAGGV---ARMADPTIVEEVMNAV--SIPVMA- 83 (305)
T ss_dssp HHHHHHHHTTTTCEEE-EESSHHHHHHHHHTTCSEEEECCC-------CCCC---CCCCCHHHHHHHHHHC--SSCEEE-
T ss_pred HHHHHHHHHccCCeee-cCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCc---ccCCCHHHHHHHHHhC--CCCEEe-
Confidence 3344455556777877 66778999999999999994322 1111 0122456777887766 789984
Q ss_pred cCCCC--HHHHHHHHHhCCCEEE
Q 018919 266 GGVRR--GTDVFKALALGASGIF 286 (349)
Q Consensus 266 GGI~~--~~dv~kal~~GA~~V~ 286 (349)
+++. .+++-.++++|||+|.
T Consensus 84 -k~r~g~~~~~~~~~a~GAd~V~ 105 (305)
T 2nv1_A 84 -KARIGHIVEARVLEAMGVDYID 105 (305)
T ss_dssp -EECTTCHHHHHHHHHHTCSEEE
T ss_pred -cccccchHHHHHHHHCCCCEEE
Confidence 5555 6677778889999997
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.68 Score=43.81 Aligned_cols=60 Identities=7% Similarity=0.029 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+.++.+.+.|+|.|.++ ++ .+..+.+.++++. +++|+. .+.+.+++.++...|+|+|.+
T Consensus 112 ~~~~~~~~~~g~~~V~~~--~g------~~~~~~i~~~~~~---g~~v~~--~v~t~~~a~~a~~~GaD~i~v 171 (369)
T 3bw2_A 112 DAKLAVLLDDPVPVVSFH--FG------VPDREVIARLRRA---GTLTLV--TATTPEEARAVEAAGADAVIA 171 (369)
T ss_dssp HHHHHHHHHSCCSEEEEE--SS------CCCHHHHHHHHHT---TCEEEE--EESSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhcCCCEEEEe--CC------CCcHHHHHHHHHC---CCeEEE--ECCCHHHHHHHHHcCCCEEEE
Confidence 456788999999999883 33 1234555555542 577776 488999999999999999999
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.74 Score=39.80 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=31.3
Q ss_pred HHHHHHHHHhc-----CCcEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~-----~~pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.++++++.. +.|+++-+-.+++++..+.++|+|+++++
T Consensus 154 ~~~i~~~~~~~~~~~~~~~i~v~GGI~~~~~~~~~~~Gad~vvvG 198 (220)
T 2fli_A 154 LEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAG 198 (220)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHhcCCCceEEEECcCCHHHHHHHHHcCCCEEEEC
Confidence 45677777655 68887766666888888999999999995
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.59 Score=44.10 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=58.6
Q ss_pred HHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHH
Q 018919 116 EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDED 195 (349)
Q Consensus 116 ~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (349)
.+++..+.|.++.... + .+.+++++++|+++|.++- + |.|. .. ..+..++.
T Consensus 211 ~lr~~~~~PvivK~v~--~----~e~A~~a~~~GaD~I~vsn-~---GG~~---------~d----------~~~~~~~~ 261 (352)
T 3sgz_A 211 LLQSITRLPIILKGIL--T----KEDAELAMKHNVQGIVVSN-H---GGRQ---------LD----------EVSASIDA 261 (352)
T ss_dssp HHHHHCCSCEEEEEEC--S----HHHHHHHHHTTCSEEEECC-G---GGTS---------SC----------SSCCHHHH
T ss_pred HHHHhcCCCEEEEecC--c----HHHHHHHHHcCCCEEEEeC-C---CCCc---------cC----------CCccHHHH
Confidence 3444444566665432 2 3567889999999998742 1 1110 00 01222677
Q ss_pred HHHHHHhc--CCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 196 VKWLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 196 i~~i~~~~--~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+.++++.. ++||++-+ +.+.+++.+++.+|||+|.+.
T Consensus 262 L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iG 301 (352)
T 3sgz_A 262 LREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLG 301 (352)
T ss_dssp HHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 88887776 68987654 689999999999999999984
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=93.01 E-value=3.7 Score=38.32 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEec-C-CCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTV-D-TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~-d-~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK 210 (349)
+.+...+.++.+.++|++.|++.- + .|.. .|. . +....+.|+.++.+++.. +.|+.+=
T Consensus 28 ~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~s------------sp~-~------g~~~~~~~e~l~~i~~~~~~~~i~~l 88 (345)
T 1nvm_A 28 TLDDVRAIARALDKAKVDSIEVAHGDGLQGS------------SFN-Y------GFGRHTDLEYIEAVAGEISHAQIATL 88 (345)
T ss_dssp CHHHHHHHHHHHHHHTCSEEECSCTTSTTCC------------BTT-T------BCCSSCHHHHHHHHHTTCSSSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCC------------CCc-c------cCCCCCHHHHHHHHHhhCCCCEEEEE
Confidence 456677888999999999999741 1 1210 011 0 011122378888888764 5677654
Q ss_pred Ee---cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEe---cCCCCHHHHHH----HHHh
Q 018919 211 GV---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD---GGVRRGTDVFK----ALAL 280 (349)
Q Consensus 211 ~v---~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~---GGI~~~~dv~k----al~~ 280 (349)
+. ...++++.+.++|+|.+.+..+-. ......+.+..+++. .+.+++. ..-.+.+.+.+ +..+
T Consensus 89 ~~p~~~~~~~i~~a~~aGvd~v~I~~~~s----~~~~~~~~i~~ak~~---G~~v~~~~~~a~~~~~e~~~~ia~~~~~~ 161 (345)
T 1nvm_A 89 LLPGIGSVHDLKNAYQAGARVVRVATHCT----EADVSKQHIEYARNL---GMDTVGFLMMSHMIPAEKLAEQGKLMESY 161 (345)
T ss_dssp ECBTTBCHHHHHHHHHHTCCEEEEEEETT----CGGGGHHHHHHHHHH---TCEEEEEEESTTSSCHHHHHHHHHHHHHH
T ss_pred ecCCcccHHHHHHHHhCCcCEEEEEEecc----HHHHHHHHHHHHHHC---CCEEEEEEEeCCCCCHHHHHHHHHHHHHC
Confidence 22 367899999999999999864311 111223333333332 2333322 43344444443 3337
Q ss_pred CCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 281 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 281 GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
||+.|.+.--. +..-+..+.++++.+++++
T Consensus 162 Ga~~i~l~DT~----G~~~P~~v~~lv~~l~~~~ 191 (345)
T 1nvm_A 162 GATCIYMADSG----GAMSMNDIRDRMRAFKAVL 191 (345)
T ss_dssp TCSEEEEECTT----CCCCHHHHHHHHHHHHHHS
T ss_pred CCCEEEECCCc----CccCHHHHHHHHHHHHHhc
Confidence 99998876421 0111444555555555543
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.27 Score=44.07 Aligned_cols=40 Identities=8% Similarity=0.124 Sum_probs=31.9
Q ss_pred HHHHHHHHHhc-----CCcEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~-----~~pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.|+++|+.. +.+|.+-+-.+++.+..+.++|||.+++.
T Consensus 179 l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGAD~~V~G 223 (246)
T 3inp_A 179 LDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAG 223 (246)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEES
T ss_pred HHHHHHHHHHHHhcCCCeeEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 56677776643 47887777778899999999999999984
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=92.93 E-value=0.49 Score=42.53 Aligned_cols=71 Identities=27% Similarity=0.319 Sum_probs=53.4
Q ss_pred ecCHHHHHHHHHcCCCEEEEecC---CCCCCCCchhhHHHHHHHHHHhcCCCcEEE-----ecCCCCH--------HHHH
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVRRG--------TDVF 275 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~---gg~~~~~~~~~~~~l~~i~~~~~~~ipvia-----~GGI~~~--------~dv~ 275 (349)
+.+.++|..|.+.|||-|-+-.. ||. .|+...+..+++.+ ++||.+ .|+.... +|+.
T Consensus 8 ~~s~~~a~~A~~~GAdRIELc~~L~~GGl-----TPS~g~i~~~~~~~--~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~ 80 (256)
T 1twd_A 8 CYSMECALTAQQNGADRVELCAAPKEGGL-----TPSLGVLKSVRQRV--TIPVHPIIRPRGGDFCYSDGEFAAILEDVR 80 (256)
T ss_dssp ESSHHHHHHHHHTTCSEEEECBCGGGTCB-----CCCHHHHHHHHHHC--CSCEEEBCCSSSSCSCCCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEEEEcCCcccCCC-----CCCHHHHHHHHHHc--CCceEEEECCCCCCCcCCHHHHHHHHHHHH
Confidence 37899999999999999998543 332 35566777777776 688876 3555444 3777
Q ss_pred HHHHhCCCEEEEch
Q 018919 276 KALALGASGIFIGR 289 (349)
Q Consensus 276 kal~~GA~~V~ig~ 289 (349)
.+.++|||+|.+|-
T Consensus 81 ~~~~~GadGvV~G~ 94 (256)
T 1twd_A 81 TVRELGFPGLVTGV 94 (256)
T ss_dssp HHHHTTCSEEEECC
T ss_pred HHHHcCCCEEEEee
Confidence 78889999999994
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.51 Score=43.80 Aligned_cols=84 Identities=13% Similarity=-0.045 Sum_probs=52.8
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~ 211 (349)
.+.+...+.+++..+.|++.|.|+..+..+|...++- .++... +.+ ....|+.+++.+++||.+ .
T Consensus 46 ~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~--------~V~~~e-----E~~Rv~pvI~~l~~~~~vpISI-D 111 (314)
T 3tr9_A 46 LDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTD--------SPSTQI-----ELDRLLPVIDAIKKRFPQLISV-D 111 (314)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-------------CHHHHH-----HHHHHHHHHHHHHHHCCSEEEE-E
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccC--------CCCHHH-----HHHHHHHHHHHHHhhCCCeEEE-e
Confidence 3667777788888899999999887554332110000 000000 000 124577777778999987 5
Q ss_pred ecCHHHHHHHHHcCCCEEE
Q 018919 212 VLTAEDARIAVQAGAAGII 230 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~ 230 (349)
...++.++.|+++|++.|-
T Consensus 112 T~~~~Va~aAl~aGa~iIN 130 (314)
T 3tr9_A 112 TSRPRVMREAVNTGADMIN 130 (314)
T ss_dssp CSCHHHHHHHHHHTCCEEE
T ss_pred CCCHHHHHHHHHcCCCEEE
Confidence 6788999999999998663
|
| >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=4.8 Score=35.61 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=89.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-h-HHHHHHHHHhcCCcEEEEEecCHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-M-DEDVKWLQTITKLPILVKGVLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~-~~~i~~i~~~~~~pv~vK~v~~~~ 216 (349)
.+.+..++++|+++|.+|+-- |.. . .+++..+++..+.|+=+-+..+.|
T Consensus 28 v~aA~~ae~aGAdgITvHlRe-----------------------------DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e 78 (243)
T 1m5w_A 28 VQAAFIAEQAGADGITVHLRE-----------------------------DRRHITDRDVRILRQTLDTRMNLEMAVTEE 78 (243)
T ss_dssp HHHHHHHHTTTCSEEEEECCT-----------------------------TCSSSCHHHHHHHHHHCSSEEEEEECSSHH
T ss_pred HHHHHHHHHcCCCEEEeCCCC-----------------------------CcccCCHHHHHHHHHhcCCCEEeccCCCHH
Confidence 456777889999999998732 222 2 577999998888999888889999
Q ss_pred HHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 217 DARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
....+.+.-.+.+++-.-..-+ +|. ....+.|..+.+.++ -++.++.+- +.+++-.|.+.||+.|=+
T Consensus 79 mi~ia~~~kP~~vtLVPE~r~e~TTegGldv-~~~~~~l~~~i~~L~~~GIrVSLFIDp---d~~qi~aA~~~GA~~IEL 154 (243)
T 1m5w_A 79 MLAIAVETKPHFCCLVPEKRQEVTTEGGLDV-AGQRDKMRDACKRLADAGIQVSLFIDA---DEEQIKAAAEVGAPFIEI 154 (243)
T ss_dssp HHHHHHHHCCSEEEECCCCSSCSSCCSCCCS-GGGHHHHHHHHHHHHHTTCEEEEEECS---CHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEECCCCCCCcCCCcchhH-HhhHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHhCcCEEEE
Confidence 9999999999999986421111 222 234555656555543 257788874 578898899999999999
Q ss_pred chHHHH
Q 018919 288 GRPVVY 293 (349)
Q Consensus 288 g~~~l~ 293 (349)
-+--+-
T Consensus 155 hTG~Ya 160 (243)
T 1m5w_A 155 HTGCYA 160 (243)
T ss_dssp ECHHHH
T ss_pred echhhh
Confidence 986553
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.63 Score=45.30 Aligned_cols=147 Identities=12% Similarity=-0.006 Sum_probs=86.5
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCC-c-hhHHhhhhcCCCCcCc---cccc--CC-CCC----Cch-HHHHHHH
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLG-R-READIKNRFTLPPFLT---LKNF--QG-LDL----GKM-DEDVKWL 199 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g-~-r~~d~~~~~~~p~~~~---~~~~--~~-~~~----~~~-~~~i~~i 199 (349)
.+++.+.+.++++.+.|++++-+.++..... . -.+........+.+.. .+.. .+ ..+ .+. .+.++.+
T Consensus 154 ~~~e~~~~~a~~~~~~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~av 233 (440)
T 3t6c_A 154 ADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKSIPRLFDHL 233 (440)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSSCCSSEECCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeccCCccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHH
Confidence 5677777888888889999998877532100 0 0000000000000000 0000 00 001 112 4568889
Q ss_pred HHhc--CCcEEEEEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 200 QTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 200 ~~~~--~~pv~vK~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
|+.+ +++|.+..- -+.++| +.+.+.|++.|-= ...+..++.+.++++.. .+||+++.-+.+.
T Consensus 234 R~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~~ 303 (440)
T 3t6c_A 234 RNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLED--------PVAPENTEWLKMLRQQS--STPIAMGELFVNV 303 (440)
T ss_dssp HHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEEC--------SSCGGGGGGHHHHHHHC--CSCEEECTTCCSH
T ss_pred HHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEEEC--------CCChhhHHHHHHHHhhc--CCCEEeCcccCCH
Confidence 9987 578887653 355554 4455677776631 01123456677777776 7999999999999
Q ss_pred HHHHHHHHhC-CCEEEEch
Q 018919 272 TDVFKALALG-ASGIFIGR 289 (349)
Q Consensus 272 ~dv~kal~~G-A~~V~ig~ 289 (349)
.|+.++++.| +|.|++--
T Consensus 304 ~~~~~~i~~~a~d~v~~k~ 322 (440)
T 3t6c_A 304 NEWKPLIDNKLIDYIRCHI 322 (440)
T ss_dssp HHHHHHHHTTCCSEECCCG
T ss_pred HHHHHHHHcCCccceeech
Confidence 9999999986 79988864
|
| >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=92.77 E-value=5.3 Score=35.95 Aligned_cols=122 Identities=20% Similarity=0.183 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-h-HHHHHHHHHhcCCcEEEEEecCHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-M-DEDVKWLQTITKLPILVKGVLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~-~~~i~~i~~~~~~pv~vK~v~~~~ 216 (349)
.+.+..++++|+++|.+|+-- |.. . .+++..+++..+.|+=+-+..+.|
T Consensus 56 v~aA~~ae~aGAdGITvHlRe-----------------------------DrRHI~d~Dv~~L~~~i~t~lNlEma~t~e 106 (278)
T 3gk0_A 56 VRAALAAEDAGADAITLHLRE-----------------------------DRRHIVDADVRTLRPRVKTRMNLECAVTPE 106 (278)
T ss_dssp HHHHHHHHHTTCSEEEEECCT-----------------------------TCSSSCHHHHHHHHHHCSSCEEEEECSSHH
T ss_pred HHHHHHHHHcCCCEEEeccCC-----------------------------CcccCCHHHHHHHHHHcCCCEEeecCCCHH
Confidence 456677889999999998732 221 2 477999999889999888889999
Q ss_pred HHHHHHHcCCCEEEEecCCCCC--CCCc---hhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 217 DARIAVQAGAAGIIVSNHGARQ--LDYV---PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~--~~~~---~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
....+.+.-.+.+++-.-..-+ -++| ....+.|.++.+.++ -++.++.+ -+.+++..|.++||+.|=+-
T Consensus 107 mi~ial~~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFID---pd~~qI~aA~~~GAd~IELh 183 (278)
T 3gk0_A 107 MLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFID---PDEAQIRAAHETGAPVIELH 183 (278)
T ss_dssp HHHHHHHHCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEEC---SCHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHcCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHhCcCEEEEe
Confidence 9999999999999986321111 1122 223455555554442 25688887 45788888999999999998
Q ss_pred hHHH
Q 018919 289 RPVV 292 (349)
Q Consensus 289 ~~~l 292 (349)
+--+
T Consensus 184 TG~Y 187 (278)
T 3gk0_A 184 TGRY 187 (278)
T ss_dssp CHHH
T ss_pred cchh
Confidence 7554
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.51 Score=44.73 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCH
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTA 215 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~ 215 (349)
+...++++.++++|++.|.++... . .+ +.++++|+.+++||++-+-.++
T Consensus 242 ~~~~~la~~l~~~Gvd~i~v~~~~--~--------------------------~~---~~~~~ik~~~~iPvi~~Ggit~ 290 (362)
T 4ab4_A 242 ETFTYVARELGKRGIAFICSRERE--A--------------------------DD---SIGPLIKEAFGGPYIVNERFDK 290 (362)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCC--C--------------------------TT---CCHHHHHHHHCSCEEEESSCCH
T ss_pred HHHHHHHHHHHHhCCCEEEECCCC--C--------------------------CH---HHHHHHHHHCCCCEEEeCCCCH
Confidence 345678889999999998875432 0 00 1367778888999987665599
Q ss_pred HHHHHHHHcC-CCEEEE
Q 018919 216 EDARIAVQAG-AAGIIV 231 (349)
Q Consensus 216 ~~a~~a~~~G-~d~I~v 231 (349)
++|+.+++.| +|.|.+
T Consensus 291 e~a~~~l~~g~aD~V~i 307 (362)
T 4ab4_A 291 ASANAALASGKADAVAF 307 (362)
T ss_dssp HHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHcCCccEEEE
Confidence 9999999998 999988
|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=3.2 Score=37.64 Aligned_cols=131 Identities=19% Similarity=0.107 Sum_probs=78.2
Q ss_pred eEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc
Q 018919 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT 203 (349)
Q Consensus 125 ~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~ 203 (349)
..+.|.. .+.+...+.++.+.+.|+|++++.+|.-.. + .+.+. .+.++.+|+.+
T Consensus 42 i~v~l~~-~~~~e~~~~~~~~~~~gaD~VElRvD~l~~-------------~-----------~~~~~v~~~l~~lr~~~ 96 (276)
T 3o1n_A 42 IIVSLMG-KTITDVKSEALAYREADFDILEWRVDHFAN-------------V-----------TTAESVLEAAGAIREII 96 (276)
T ss_dssp EEEEECC-SSHHHHHHHHHHHTTSCCSEEEEEGGGCTT-------------T-----------TCHHHHHHHHHHHHHHC
T ss_pred EEEEeCC-CCHHHHHHHHHHHhhCCCCEEEEEeccccc-------------c-----------CcHHHHHHHHHHHHHhc
Confidence 3455543 566666777777777899999999985210 0 01123 46688888887
Q ss_pred -CCcEEEEEec---------CH----HHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHH-hcCCCcEEEec-
Q 018919 204 -KLPILVKGVL---------TA----EDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKA-TQGRIPVFLDG- 266 (349)
Q Consensus 204 -~~pv~vK~v~---------~~----~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~-~~~~ipvia~G- 266 (349)
++|+++-... +. +..+.+++.| +|+|.|--. ... +.+.++.+. .+.++.||++-
T Consensus 97 ~~~PiI~T~Rt~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~------~~~---~~~~~l~~~a~~~~~kvI~S~H 167 (276)
T 3o1n_A 97 TDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELF------TGD---DEVKATVGYAHQHNVAVIMSNH 167 (276)
T ss_dssp CSSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGG------GCH---HHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEEEEhhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECc------CCH---HHHHHHHHHHHhCCCEEEEEee
Confidence 7999986542 22 2356678889 999998421 111 234444332 12367777752
Q ss_pred ---CCCCHHHHH----HHHHhCCCEEEEch
Q 018919 267 ---GVRRGTDVF----KALALGASGIFIGR 289 (349)
Q Consensus 267 ---GI~~~~dv~----kal~~GA~~V~ig~ 289 (349)
+--+.+++. ++..+|||.|=+..
T Consensus 168 df~~tP~~~el~~~~~~~~~~GaDIvKia~ 197 (276)
T 3o1n_A 168 DFHKTPAAEEIVQRLRKMQELGADIPKIAV 197 (276)
T ss_dssp ESSCCCCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred cCCCCcCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 233334444 34457888776654
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.45 Score=45.42 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCH
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTA 215 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~ 215 (349)
+...++++.+++.|++.|.++..... . +. . + .+ ++++|+.+++||++-+-.++
T Consensus 266 ~~~~~la~~l~~~Gvd~i~v~~~~~~------------~-~~----------~-~--~~-~~~ir~~~~iPvi~~G~it~ 318 (379)
T 3aty_A 266 ALTKHLCKKIEPLSLAYLHYLRGDMV------------N-QQ----------I-G--DV-VAWVRGSYSGVKISNLRYDF 318 (379)
T ss_dssp HHHHHHHHHHGGGCCSEEEEECSCTT------------S-CC----------C-C--CH-HHHHHTTCCSCEEEESSCCH
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCcC------------C-CC----------c-c--HH-HHHHHHHCCCcEEEECCCCH
Confidence 44667888888999999987653210 0 00 0 1 26 88999999999987765599
Q ss_pred HHHHHHHHcC-CCEEEE
Q 018919 216 EDARIAVQAG-AAGIIV 231 (349)
Q Consensus 216 ~~a~~a~~~G-~d~I~v 231 (349)
++++.+++.| +|.|.+
T Consensus 319 ~~a~~~l~~g~aD~V~i 335 (379)
T 3aty_A 319 EEADQQIREGKVDAVAF 335 (379)
T ss_dssp HHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHcCCCeEEEe
Confidence 9999999998 999988
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=1 Score=42.20 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=33.8
Q ss_pred HHHHHHHHHhc-CCcEEEE-EecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.|+++++.. ++||++- ++.+++++.+++.+|||+|.+.
T Consensus 239 ~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 239 AASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 67788888876 8998764 4689999999999999999984
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=92.43 E-value=0.62 Score=41.12 Aligned_cols=40 Identities=30% Similarity=0.415 Sum_probs=34.0
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.++++|+.. +.|+.+-+-.+++.+..+.++|||.+++.
T Consensus 157 l~ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 157 MPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp HHHHHHHHHHCTTCEEEEESSCSTTTHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHhcCCCCEEEeCCcCHHHHHHHHHcCCCEEEEe
Confidence 67788888876 57887777778999999999999999984
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.69 Score=43.92 Aligned_cols=89 Identities=18% Similarity=0.177 Sum_probs=58.3
Q ss_pred HHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHH
Q 018919 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE 194 (349)
Q Consensus 115 e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~ 194 (349)
+.+++..+.+.++... . +.+.+++++++|+++|.++- . |.|. .. ..+..++
T Consensus 222 ~~lr~~~~~PvivK~v--~----~~e~a~~a~~~Gad~I~vs~-~---ggr~---------~~----------~g~~~~~ 272 (368)
T 2nli_A 222 EEIAGHSGLPVFVKGI--Q----HPEDADMAIKRGASGIWVSN-H---GARQ---------LY----------EAPGSFD 272 (368)
T ss_dssp HHHHHHSSSCEEEEEE--C----SHHHHHHHHHTTCSEEEECC-G---GGTS---------CS----------SCCCHHH
T ss_pred HHHHHHcCCCEEEEcC--C----CHHHHHHHHHcCCCEEEEcC-C---CcCC---------CC----------CCCChHH
Confidence 3344444455555432 1 24567889999999998732 1 1110 00 0122377
Q ss_pred HHHHHHHhc--CCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 195 DVKWLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 195 ~i~~i~~~~--~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.++++.. ++||++=+ +.+.+++.+++.+|||+|.+.
T Consensus 273 ~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iG 313 (368)
T 2nli_A 273 TLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALG 313 (368)
T ss_dssp HHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 788888877 69987654 689999999999999999984
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=92.23 E-value=3 Score=37.86 Aligned_cols=125 Identities=20% Similarity=0.241 Sum_probs=84.8
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEE
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVK 210 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK 210 (349)
..+.+...+.++++.++|++++-...-.|.. .| ..+.+. ... ++.++++++..++|++.
T Consensus 48 ~~~~e~a~~~a~~~k~~ga~~~k~~~~kprt------------s~-----~~f~g~--g~~gl~~l~~~~~~~Gl~~~t- 107 (276)
T 1vs1_A 48 VESWEQVREAALAVKEAGAHMLRGGAFKPRT------------SP-----YSFQGL--GLEGLKLLRRAGDEAGLPVVT- 107 (276)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECBSSCCCS------------ST-----TSCCCC--THHHHHHHHHHHHHHTCCEEE-
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeEEEeCCC------------Ch-----hhhcCC--CHHHHHHHHHHHHHcCCcEEE-
Confidence 4577888899999999999986543322211 01 011111 122 67788888889999986
Q ss_pred EecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCC-CHHHHHHHHH----hCCCEE
Q 018919 211 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR-RGTDVFKALA----LGASGI 285 (349)
Q Consensus 211 ~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~-~~~dv~kal~----~GA~~V 285 (349)
.+.+++.+..+.+. +|.+.+...- ......+.++.+. +.||+..-|.. +.+|+..|+. .|..-+
T Consensus 108 e~~d~~~~~~l~~~-vd~~kIgs~~-------~~n~~ll~~~a~~---~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i 176 (276)
T 1vs1_A 108 EVLDPRHVETVSRY-ADMLQIGARN-------MQNFPLLREVGRS---GKPVLLKRGFGNTVEELLAAAEYILLEGNWQV 176 (276)
T ss_dssp ECCCGGGHHHHHHH-CSEEEECGGG-------TTCHHHHHHHHHH---TCCEEEECCTTCCHHHHHHHHHHHHHTTCCCE
T ss_pred ecCCHHHHHHHHHh-CCeEEECccc-------ccCHHHHHHHHcc---CCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 57788888889999 9999994321 1134566666543 78999999997 8888877665 476444
Q ss_pred EE
Q 018919 286 FI 287 (349)
Q Consensus 286 ~i 287 (349)
.+
T Consensus 177 ~L 178 (276)
T 1vs1_A 177 VL 178 (276)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=92.22 E-value=0.65 Score=43.99 Aligned_cols=65 Identities=17% Similarity=0.118 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCH
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTA 215 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~ 215 (349)
+...++++.++++|++.|.++... . .+ +.++++|+.+++||++-+-.++
T Consensus 250 ~~~~~la~~l~~~Gvd~i~v~~~~--~--------------------------~~---~~~~~ik~~~~iPvi~~Ggit~ 298 (361)
T 3gka_A 250 ATFGHVARELGRRRIAFLFARESF--G--------------------------GD---AIGQQLKAAFGGPFIVNENFTL 298 (361)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCC--S--------------------------TT---CCHHHHHHHHCSCEEEESSCCH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCC--C--------------------------CH---HHHHHHHHHcCCCEEEeCCCCH
Confidence 345678899999999998875432 0 01 2367788888999887665699
Q ss_pred HHHHHHHHcC-CCEEEE
Q 018919 216 EDARIAVQAG-AAGIIV 231 (349)
Q Consensus 216 ~~a~~a~~~G-~d~I~v 231 (349)
++|+.+++.| +|.|.+
T Consensus 299 e~a~~~l~~G~aD~V~i 315 (361)
T 3gka_A 299 DSAQAALDAGQADAVAW 315 (361)
T ss_dssp HHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHcCCccEEEE
Confidence 9999999998 999987
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.49 Score=43.99 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=50.4
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v 212 (349)
+.+...+.+++..+.|++.|.|+..+..+|...-+..+. ... ...|+.+++..++||.+ ..
T Consensus 31 ~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE-----------------~~Rv~pvI~~l~~~~~vpiSI-DT 92 (314)
T 2vef_A 31 ALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEE-----------------IQRVVPVIKAIRKESDVLISI-DT 92 (314)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHH-----------------HHHHHHHHHHHHHHCCCEEEE-EC
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHH-----------------HHHHHHHHHHHHhhCCceEEE-eC
Confidence 345556667777889999999887654332111000000 001 34577788777899987 56
Q ss_pred cCHHHHHHHHHcCCCEEE
Q 018919 213 LTAEDARIAVQAGAAGII 230 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~ 230 (349)
..++.++.|+++|++.|-
T Consensus 93 ~~~~Va~aAl~aGa~iIN 110 (314)
T 2vef_A 93 WKSQVAEAALAAGADLVN 110 (314)
T ss_dssp SCHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHcCCCEEE
Confidence 788999999999998774
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.08 E-value=1.2 Score=39.64 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=33.7
Q ss_pred HHHHHHHHHh--cCCcEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~--~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.++++++. .++|+++=+-.+++++..+.++|+|+|.+.
T Consensus 178 l~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gvav~ 219 (243)
T 3o63_A 178 LGLVRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIVVV 219 (243)
T ss_dssp HHHHHHHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEEES
T ss_pred HHHHHHHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEEEe
Confidence 7888888876 489988766569999999999999999985
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=91.99 E-value=2 Score=39.03 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC----CCCCchhhHHH----HHHHHHHhcCCCcEEE
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVFL 264 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~----~~~~~~~~~~~----l~~i~~~~~~~ipvia 264 (349)
...++++++. +-||.+=+.-+.-.|+.+.++|+|.|.+....+- ..|.++-+++. ...+++.. .+.||++
T Consensus 18 ~~~lr~~~~~-g~~i~m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~-~~~~vva 95 (275)
T 3vav_A 18 VPKLQAMREA-GEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQ-PRALIVA 95 (275)
T ss_dssp HHHHHHHHHH-TCCEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTC-CSSEEEE
T ss_pred HHHHHHHHHC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcC-CCCCEEE
Confidence 5567766654 6788877777889999999999999955422110 12344545433 33344433 2589999
Q ss_pred ec---CCCCHHHHH----HHHHhCCCEEEEc
Q 018919 265 DG---GVRRGTDVF----KALALGASGIFIG 288 (349)
Q Consensus 265 ~G---GI~~~~dv~----kal~~GA~~V~ig 288 (349)
|- |..++++++ +++..||++|-+-
T Consensus 96 D~pfgsY~s~~~a~~~a~rl~kaGa~aVklE 126 (275)
T 3vav_A 96 DLPFGTYGTPADAFASAVKLMRAGAQMVKFE 126 (275)
T ss_dssp ECCTTSCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 84 456888875 5667899999875
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=0.39 Score=45.81 Aligned_cols=72 Identities=11% Similarity=0.009 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCH
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTA 215 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~ 215 (349)
+...++++.+++.|+++|.++..... . .+.+ ..++.++++|+.+++||++-+-.++
T Consensus 255 ~~~~~la~~le~~Gvd~i~v~~~~~~---------~---~~~~------------~~~~~~~~ik~~~~iPvi~~Ggi~~ 310 (377)
T 2r14_A 255 AMAFYLAGELDRRGLAYLHFNEPDWI---------G---GDIT------------YPEGFREQMRQRFKGGLIYCGNYDA 310 (377)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCC------------------C------------CCTTHHHHHHHHCCSEEEEESSCCH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccc---------C---CCCc------------chHHHHHHHHHHCCCCEEEECCCCH
Confidence 45667889999999999987653210 0 0100 0156788999999999988765689
Q ss_pred HHHHHHHHcC-CCEEEE
Q 018919 216 EDARIAVQAG-AAGIIV 231 (349)
Q Consensus 216 ~~a~~a~~~G-~d~I~v 231 (349)
++|+.+++.| ||+|.+
T Consensus 311 ~~a~~~l~~g~aD~V~i 327 (377)
T 2r14_A 311 GRAQARLDDNTADAVAF 327 (377)
T ss_dssp HHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHCCCceEEee
Confidence 9999999998 999988
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.42 Score=45.02 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=34.6
Q ss_pred HHHHHHHHHhc--CCcEEE-EEecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTIT--KLPILV-KGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~--~~pv~v-K~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
|+.++++++.+ ++||+. .++.+.++|.+++.+|||+|.+.
T Consensus 262 ~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~ig 304 (345)
T 3oix_A 262 LANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIG 304 (345)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEC
Confidence 67899999988 699864 45789999999999999999984
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=91.83 E-value=7.2 Score=35.35 Aligned_cols=172 Identities=15% Similarity=0.127 Sum_probs=100.7
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHHh-------hCCCceEEEEeecCChhHHHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------TGPGIRFFQLYVYKDRNVVAQ 140 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~~-------~~~~~~~~Ql~~~~~~~~~~~ 140 (349)
|.++.|+.-.+-.+.++-..+++-.-+.|+.+++ ++ +...+.+|-.+ ...+ .+...- ..+-....+
T Consensus 5 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-ViaGvg-~~~t~~ai~ 82 (288)
T 2nuw_A 5 SPIITPFDKQGKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK-LIFQVG-SLNLNDVME 82 (288)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC-EEEECC-CSCHHHHHH
T ss_pred EeeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-eEEeeC-CCCHHHHHH
Confidence 4556676433323444455777777788887654 32 23456666432 1224 444543 245566788
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCC-CCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe------
Q 018919 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV------ 212 (349)
Q Consensus 141 ~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~-p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v------ 212 (349)
+++.+++.|++++.+. .|.. .- | +.+ ..+..+.+.+.+++||++=.+
T Consensus 83 la~~A~~~Gadavlv~--~P~y-----------~~~~------------s~~~l~~~f~~va~a~~lPiilYn~P~~tg~ 137 (288)
T 2nuw_A 83 LVKFSNEMDILGVSSH--SPYY-----------FPRL------------PEKFLAKYYEEIARISSHSLYIYNYPAATGY 137 (288)
T ss_dssp HHHHHHTSCCSEEEEC--CCCS-----------SCSC------------CHHHHHHHHHHHHHHCCSCEEEEECHHHHSC
T ss_pred HHHHHHhcCCCEEEEc--CCcC-----------CCCC------------CHHHHHHHHHHHHHhcCCCEEEEECchHhCc
Confidence 8999999999998763 2321 10 0 111 256677888888999998664
Q ss_pred -cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 213 -LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 213 -~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
.+++...++ .+-+|.-+. .++..+.++.+ .++++.|+ +|- ..-++.++.+ |+++.-+.+
T Consensus 138 ~l~~~~~~~L---nIvgiKdss----------gd~~~~~~~~~-~~~~f~v~-~G~---d~~~~~~l~~-~~G~is~~a 197 (288)
T 2nuw_A 138 DIPPSILKSL---PVKGIKDTN----------QDLAHSLEYKL-NLPGVKVY-NGS---NTLIYYSLLS-LDGVVASFT 197 (288)
T ss_dssp CCCHHHHTTT---TEEEEEECC----------SCHHHHHHHHH-HSTTCEEE-ECC---GGGHHHHHTT-SSEEECGGG
T ss_pred CCCHHHHhcc---EEEEEEeCC----------CCHHHHHHHHh-cCCCeEEE-ECc---HHHHHHHHHH-hCEEEecHH
Confidence 355666555 444444321 12444555555 54456554 442 2456778888 999998875
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=91.82 E-value=2.6 Score=38.70 Aligned_cols=91 Identities=23% Similarity=0.375 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCC---C--CCCCchhhHH----HHHHHHHHhcCCCcEEE
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA---R--QLDYVPATIM----ALEEVVKATQGRIPVFL 264 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg---~--~~~~~~~~~~----~l~~i~~~~~~~ipvia 264 (349)
..++++++. +-|+.+-++-+.-.|+.+.++|+|+|.+++.+- . ..|.++-+++ .+..|.+.. ++||++
T Consensus 7 ~~lr~l~~~-~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~--~~Pvia 83 (295)
T 1xg4_A 7 KAFRAALTK-ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC--SLPLLV 83 (295)
T ss_dssp HHHHHHHHH-SSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHC--CSCEEE
T ss_pred HHHHHHHhC-CCcEEEecCcCHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhC--CCCEEe
Confidence 345555543 568888788888999999999999999986421 0 1234444443 344455554 689999
Q ss_pred ec--CCC-CHHHHH----HHHHhCCCEEEE
Q 018919 265 DG--GVR-RGTDVF----KALALGASGIFI 287 (349)
Q Consensus 265 ~G--GI~-~~~dv~----kal~~GA~~V~i 287 (349)
|. |.. ++.++. +++..||++|.|
T Consensus 84 D~d~Gyg~~~~~~~~~v~~l~~aGa~gv~i 113 (295)
T 1xg4_A 84 DADIGFGSSAFNVARTVKSMIKAGAAGLHI 113 (295)
T ss_dssp ECTTCSSSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred cCCcccCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 87 433 555554 355689999987
|
| >3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt, transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.79 E-value=3.6 Score=38.46 Aligned_cols=97 Identities=9% Similarity=0.042 Sum_probs=66.5
Q ss_pred HHHHHH-HHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC------------CchhhHHHHHHHHHHh---c
Q 018919 194 EDVKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD------------YVPATIMALEEVVKAT---Q 257 (349)
Q Consensus 194 ~~i~~i-~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~------------~~~~~~~~l~~i~~~~---~ 257 (349)
+.++.+ .+. ++++-+-.+.+.+.+..|.++|+..|... =||-.+ .+.+.+..+.++.+.. +
T Consensus 153 ~A~~~L~~~e-GI~vNvTLiFS~~Qa~aaa~AGa~~iSpF--VgRidd~~~~~~~~~~~~~~d~Gv~~v~~iy~~y~~~~ 229 (339)
T 3cq0_A 153 QAARELEVKH-GIHCNMTLLFSFTQAVACAEANVTLISPF--VGRIMDFYKALSGKDYTAETDPGVLSVKKIYSYYKRHG 229 (339)
T ss_dssp HHHHHHHHHH-CCCEEEEEECCHHHHHHHHHTTCSEEEEB--SHHHHHHHHHC---CCCTTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCceeEeeeCCHHHHHHHHHcCCcEEEec--ccHHHHHhhhhcccccccccChHHHHHHHHHHHHHHcC
Confidence 445555 443 89999989999999999999999988764 122100 1222344455554443 2
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.+. .+..-.+|+..+|.. ..|+|.+-|.-.++..+.
T Consensus 230 ~~T-~v~~AS~r~~~~V~~--LaG~d~vTipp~~l~~l~ 265 (339)
T 3cq0_A 230 YAT-EVMAASFRNLDELKA--LAGIDNMTLPLNLLEQLY 265 (339)
T ss_dssp CCC-EEEEBCCCSHHHHHH--HTTSSEEEEEHHHHHHHH
T ss_pred CCc-EEEecCCCCHHHHHH--hhCCCEEECCHHHHHHHH
Confidence 234 444556999999987 579999999988887765
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=91.75 E-value=1.3 Score=39.02 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=69.9
Q ss_pred HHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHH---HhcCCcEEEEEec-----
Q 018919 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQ---TITKLPILVKGVL----- 213 (349)
Q Consensus 142 ~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~---~~~~~pv~vK~v~----- 213 (349)
+..+++.|++-|++.-+-... | ..|. +..++.++ +..++||.+-+.+
T Consensus 14 a~~A~~~GAdRIELc~~L~~G---------------G---------lTPS-~g~i~~~~~~~~~~~ipV~vMIRPR~GdF 68 (224)
T 2bdq_A 14 LTRLDKAIISRVELCDNLAVG---------------G---------TTPS-YGVIKEANQYLHEKGISVAVMIRPRGGNF 68 (224)
T ss_dssp GGGCCTTTCCEEEEEBCGGGT---------------C---------BCCC-HHHHHHHHHHHHHTTCEEEEECCSSSSCS
T ss_pred HHHHHHcCCCEEEEcCCcccC---------------C---------cCCC-HHHHHHHHHhhhhcCCceEEEECCCCCCC
Confidence 345667899999986432211 1 1233 34566666 7789999886652
Q ss_pred --C-------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCC-----CCHHHHHHHHH
Q 018919 214 --T-------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV-----RRGTDVFKALA 279 (349)
Q Consensus 214 --~-------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI-----~~~~dv~kal~ 279 (349)
+ .+|++.+.++|+|+|++.-- . ..|.-..+.+.++.++.+ .+++..-=-+ .++..+++.|.
T Consensus 69 ~Ys~~E~~~M~~Di~~~~~~GadGvV~G~L---t-~dg~iD~~~~~~Li~~a~-~~~vTFHRAFD~~~~~d~~~ale~L~ 143 (224)
T 2bdq_A 69 VYNDLELRIMEEDILRAVELESDALVLGIL---T-SNNHIDTEAIEQLLPATQ-GLPLVFHMAFDVIPKSDQKKSIDQLV 143 (224)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSEEEECCB---C-TTSSBCHHHHHHHHHHHT-TCCEEECGGGGGSCTTTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEeeE---C-CCCCcCHHHHHHHHHHhC-CCeEEEECchhccCCcCHHHHHHHHH
Confidence 2 25688899999999998421 1 122334555566655542 4555543322 55666666554
Q ss_pred -hCCCEEEE
Q 018919 280 -LGASGIFI 287 (349)
Q Consensus 280 -~GA~~V~i 287 (349)
+|.+.|.-
T Consensus 144 ~lGv~rILT 152 (224)
T 2bdq_A 144 ALGFTRILL 152 (224)
T ss_dssp HTTCCEEEE
T ss_pred HcCCCEEEC
Confidence 78888873
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=91.74 E-value=3.5 Score=38.79 Aligned_cols=126 Identities=18% Similarity=0.218 Sum_probs=85.3
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEE
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVK 210 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK 210 (349)
..+.+...+.++++.++|++++-...-.|.. .| ..+.++ ... ++.++++++.+++|++.
T Consensus 116 ~es~e~a~~~a~~~k~aGa~~vr~q~fKprT------------s~-----~~f~gl--g~egl~~l~~~~~e~Gl~~~t- 175 (350)
T 1vr6_A 116 VEGREMLMETAHFLSELGVKVLRGGAYKPRT------------SP-----YSFQGL--GEKGLEYLREAADKYGMYVVT- 175 (350)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEECBSCCCCC------------ST-----TSCCCC--THHHHHHHHHHHHHHTCEEEE-
T ss_pred cCCHHHHHHHHHHHHHcCCCeeeeeEEeCCC------------Ch-----HhhcCC--CHHHHHHHHHHHHHcCCcEEE-
Confidence 4577888899999999999986543322210 01 011111 123 67788888889999986
Q ss_pred EecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCC-CHHHHHHHHH----hCCCEE
Q 018919 211 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR-RGTDVFKALA----LGASGI 285 (349)
Q Consensus 211 ~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~-~~~dv~kal~----~GA~~V 285 (349)
.+.+++.+..+.+. +|.+.+...- ......|.++.+ . +.||+..-|.. +.+|+..|+. .|..-+
T Consensus 176 e~~d~~~~~~l~~~-vd~lkIgAr~-------~~n~~LL~~va~-~--~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~v 244 (350)
T 1vr6_A 176 EALGEDDLPKVAEY-ADIIQIGARN-------AQNFRLLSKAGS-Y--NKPVLLKRGFMNTIEEFLLSAEYIANSGNTKI 244 (350)
T ss_dssp ECSSGGGHHHHHHH-CSEEEECGGG-------TTCHHHHHHHHT-T--CSCEEEECCTTCCHHHHHHHHHHHHHTTCCCE
T ss_pred EeCCHHHHHHHHHh-CCEEEECccc-------ccCHHHHHHHHc-c--CCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeE
Confidence 67788888889899 9999994321 113456666653 2 79999999998 8888876654 476444
Q ss_pred EEc
Q 018919 286 FIG 288 (349)
Q Consensus 286 ~ig 288 (349)
.++
T Consensus 245 iLc 247 (350)
T 1vr6_A 245 ILC 247 (350)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=1.6 Score=40.99 Aligned_cols=86 Identities=8% Similarity=0.011 Sum_probs=59.1
Q ss_pred ceEEEEeec------CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHH
Q 018919 124 IRFFQLYVY------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDV 196 (349)
Q Consensus 124 ~~~~Ql~~~------~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i 196 (349)
+.++.|-.. .+.+...++++.++++ ++.|.+...... +... . ..+.. ++.+
T Consensus 212 pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~--------------~~~~--~-----~~~~~~~~~~ 269 (343)
T 3kru_A 212 PIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDVSSGGLL--------------NVDI--N-----LYPGYQVKYA 269 (343)
T ss_dssp CEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEECCCSS--------------CCCC--C-----CCTTTTHHHH
T ss_pred CeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEeccCCceE--------------eeee--c-----ccCceeehHH
Confidence 566666431 1345677888888889 999887532211 0000 0 11233 7889
Q ss_pred HHHHHhcCCcEEEEE-ecCHHHHHHHHHcC-CCEEEE
Q 018919 197 KWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 197 ~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G-~d~I~v 231 (349)
+++|+.+++||+.-+ +.++++|+.+++.| +|.|.+
T Consensus 270 ~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~i 306 (343)
T 3kru_A 270 ETIKKRCNIKTSAVGLITTQELAEEILSNERADLVAL 306 (343)
T ss_dssp HHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHHH
Confidence 999999999998765 46899999999998 999987
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=1.7 Score=38.30 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=32.7
Q ss_pred HHHHHHHHHhc-----CCcEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~-----~~pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.|+++|+.. +++|.+-+-.+++.+..+.++|||.+++.
T Consensus 151 l~kI~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 151 LDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVG 195 (231)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEESCCSTTTHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHHhccCCCceEEEECCcCHHHHHHHHHcCCCEEEEc
Confidence 56677776654 57888877788999999999999999985
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=91.50 E-value=0.92 Score=41.45 Aligned_cols=75 Identities=17% Similarity=0.003 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-----HHHHHHHHHhcCCcEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-----DEDVKWLQTITKLPIL 208 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-----~~~i~~i~~~~~~pv~ 208 (349)
+.+...+.+++..+.|++.|.|+..+..+|.. | .+..- ...++.+++.+++||.
T Consensus 36 ~~~~a~~~a~~~v~~GAdiIDIGgestrPga~----------~-----------v~~~eE~~rv~pvi~~l~~~~~~piS 94 (282)
T 1aj0_A 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAA----------E-----------VSVEEELQRVIPVVEAIAQRFEVWIS 94 (282)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCC----------C-----------CCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC----------c-----------CCHHHHHHHHHHHHHHHHhhcCCeEE
Confidence 45556667777788999999988754322200 0 11111 3457777777799998
Q ss_pred EEEecCHHHHHHHHHcCCCEEE
Q 018919 209 VKGVLTAEDARIAVQAGAAGII 230 (349)
Q Consensus 209 vK~v~~~~~a~~a~~~G~d~I~ 230 (349)
+ ....++.++.|+++|++.|-
T Consensus 95 I-DT~~~~va~aAl~aGa~iIN 115 (282)
T 1aj0_A 95 V-DTSKPEVIRESAKVGAHIIN 115 (282)
T ss_dssp E-ECCCHHHHHHHHHTTCCEEE
T ss_pred E-eCCCHHHHHHHHHcCCCEEE
Confidence 7 56788999999999998774
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=91.44 E-value=1.5 Score=41.45 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 245 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 245 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.++.+.++++.. ++||+. +|+.+.+++.++..+|||+|.++.
T Consensus 213 ~~~~i~~l~~~~--~~pv~v-K~~~~~e~a~~a~~~Gad~I~vs~ 254 (370)
T 1gox_A 213 SWKDVAWLQTIT--SLPILV-KGVITAEDARLAVQHGAAGIIVSN 254 (370)
T ss_dssp CHHHHHHHHHHC--CSCEEE-ECCCSHHHHHHHHHTTCSEEEECC
T ss_pred hHHHHHHHHHHh--CCCEEE-EecCCHHHHHHHHHcCCCEEEECC
Confidence 356677777766 789985 678999999999999999999954
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=0.89 Score=43.52 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=58.3
Q ss_pred CHHHHHh---hCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCC
Q 018919 113 SVEEVAS---TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL 189 (349)
Q Consensus 113 ~~e~i~~---~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~ 189 (349)
..+++.. ..+.+.++... .+ .+.+++++++|+++|.+.- .|.|. .. ..
T Consensus 240 ~~~~i~~lr~~~~~PvivKgv--~~----~e~A~~a~~aGad~I~vs~----~ggr~---------~~----------~g 290 (392)
T 2nzl_A 240 SWEDIKWLRRLTSLPIVAKGI--LR----GDDAREAVKHGLNGILVSN----HGARQ---------LD----------GV 290 (392)
T ss_dssp CHHHHHHHC--CCSCEEEEEE--CC----HHHHHHHHHTTCCEEEECC----GGGTS---------ST----------TC
T ss_pred HHHHHHHHHHhhCCCEEEEec--CC----HHHHHHHHHcCCCEEEeCC----CCCCc---------CC----------CC
Confidence 3444443 33345555532 22 4457889999999998731 11110 00 11
Q ss_pred CchHHHHHHHHHhc--CCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 190 GKMDEDVKWLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 190 ~~~~~~i~~i~~~~--~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+..++.+.++++.. ++||++=+ +.+.+|+.+++.+|||+|.+.
T Consensus 291 ~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iG 336 (392)
T 2nzl_A 291 PATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVG 336 (392)
T ss_dssp CCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred cChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEEC
Confidence 22367788888776 58987644 689999999999999999883
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=1.3 Score=42.06 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=56.7
Q ss_pred HHHhc-CCcEEEEEe-------cCHHHHHHHHH-cCCCEEEEecCCCC---C----CCCchhhHHHHHHHHHHhcCCCcE
Q 018919 199 LQTIT-KLPILVKGV-------LTAEDARIAVQ-AGAAGIIVSNHGAR---Q----LDYVPATIMALEEVVKATQGRIPV 262 (349)
Q Consensus 199 i~~~~-~~pv~vK~v-------~~~~~a~~a~~-~G~d~I~v~~~gg~---~----~~~~~~~~~~l~~i~~~~~~~ipv 262 (349)
+|+.. +.|++...- .+++.++++.+ .++|++.+.-.... + .+.....++.+.++++.+ ++||
T Consensus 113 vr~~ap~~~~~anlg~~ql~~~~~~~~~~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~--~vPV 190 (368)
T 3vkj_A 113 VRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKEL--SVPI 190 (368)
T ss_dssp HHHHCSSSCEEEEEEGGGGGTTCCHHHHHHHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTC--SSCE
T ss_pred HHHhCcCcceecCcCeeecCCCCCHHHHHHHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHc--CCCE
Confidence 44433 677776432 24577766554 68888887522110 0 011112466777777665 7999
Q ss_pred EEe--cCCCCHHHHHHHHHhCCCEEEE
Q 018919 263 FLD--GGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 263 ia~--GGI~~~~dv~kal~~GA~~V~i 287 (349)
++- |+-.+++++.++..+|||+|.+
T Consensus 191 ivK~vG~g~s~~~A~~l~~aGad~I~V 217 (368)
T 3vkj_A 191 IVKESGNGISMETAKLLYSYGIKNFDT 217 (368)
T ss_dssp EEECSSSCCCHHHHHHHHHTTCCEEEC
T ss_pred EEEeCCCCCCHHHHHHHHhCCCCEEEE
Confidence 995 5557899999999999999998
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=3.2 Score=38.23 Aligned_cols=110 Identities=20% Similarity=0.186 Sum_probs=72.4
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCC-------------------
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGV------------------- 268 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI------------------- 268 (349)
.+|++|+... +.|+|.+-++. ||-+...+.| -.++.|.+|.+.. ++|++.=||=
T Consensus 155 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~~--~~PLVlHGgS~vp~~~~~~~~~~gg~~~~ 232 (307)
T 3n9r_A 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDNVRKSYLDAGGDLKG 232 (307)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHH--CSCEEESSCCCCCHHHHHHHHHTTCCCTT
T ss_pred CCHHHHHHHHHHHCCCEEEEecCCcccccCCCCCCccCHHHHHHHHhcC--CCCeEEeCCCCcchHHHHHHHHhcCccCC
Confidence 4688887754 69999999873 5543222222 2578888886654 6999998853
Q ss_pred ---CCHHHHHHHHHhCCCEEEEchHHHHHHhh-------cC-----H-HHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 269 ---RRGTDVFKALALGASGIFIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 269 ---~~~~dv~kal~~GA~~V~ig~~~l~~~~~-------~G-----~-~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
...+++.+++.+|..-|=|+|-+.++... .. + .-+....+.+++.++..|..+|..
T Consensus 233 ~~G~p~e~i~~ai~~GV~KiNi~Tdl~~a~~~~vr~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 304 (307)
T 3n9r_A 233 SKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_dssp CBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHcCceEEEechHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 23478889999999999999976554321 01 1 122333455666667777777764
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=91.33 E-value=1.4 Score=38.63 Aligned_cols=73 Identities=16% Similarity=0.098 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCCEEEEec-CCCCCCCC-chhhHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHH----HhCCCEEEEc
Q 018919 216 EDARIAVQAGAAGIIVSN-HGARQLDY-VPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKAL----ALGASGIFIG 288 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~-~gg~~~~~-~~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~dv~kal----~~GA~~V~ig 288 (349)
.+++.|++.|||.|.+.- -|.- .++ -....+.+.++++++++ .++||..-+.-+.+.+.++- ++|||+|=..
T Consensus 75 ~e~~~Ai~~GAdevd~vinig~~-~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKTs 153 (220)
T 1ub3_A 75 LEAALACARGADEVDMVLHLGRA-KAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKTS 153 (220)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHH-HTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECC
T ss_pred HHHHHHHHcCCCEEEecccchhh-hCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 568999999999998753 2210 011 12235567777777643 47989888899988877643 4799999887
Q ss_pred h
Q 018919 289 R 289 (349)
Q Consensus 289 ~ 289 (349)
+
T Consensus 154 T 154 (220)
T 1ub3_A 154 T 154 (220)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=1.3 Score=43.86 Aligned_cols=87 Identities=22% Similarity=0.162 Sum_probs=55.4
Q ss_pred HHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHH
Q 018919 117 VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDV 196 (349)
Q Consensus 117 i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i 196 (349)
+++..+.+.++.... + .+.+++++++|+++|.+.- . |.+ ++. ..+..++.+
T Consensus 338 lr~~~~~PvivKgv~--~----~e~A~~a~~aGad~I~vs~-h---gG~--------~~d-----------~~~~~~~~l 388 (511)
T 1kbi_A 338 LKKKTKLPIVIKGVQ--R----TEDVIKAAEIGVSGVVLSN-H---GGR--------QLD-----------FSRAPIEVL 388 (511)
T ss_dssp HHHHCSSCEEEEEEC--S----HHHHHHHHHTTCSEEEECC-T---TTT--------SST-----------TCCCHHHHH
T ss_pred HHHHhCCcEEEEeCC--C----HHHHHHHHHcCCCEEEEcC-C---CCc--------cCC-----------CCCchHHHH
Confidence 344444455555322 2 3457888999999998732 1 111 000 011125667
Q ss_pred HHHHHhc-------CCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 197 KWLQTIT-------KLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 197 ~~i~~~~-------~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.++++.. ++||++=+ +.+.+++.+++.+|||+|.+.
T Consensus 389 ~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iG 432 (511)
T 1kbi_A 389 AETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 432 (511)
T ss_dssp HHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 7776665 68987654 689999999999999999883
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=1.9 Score=40.28 Aligned_cols=149 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred ChhHHHHHHH-HHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHH------hcCCc
Q 018919 134 DRNVVAQLVR-RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQT------ITKLP 206 (349)
Q Consensus 134 ~~~~~~~~~~-~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~------~~~~p 206 (349)
+.+...+.++ .+.++|++.|++..... ++..|+.++++++ ..+..
T Consensus 39 ~~~~k~~i~~~~L~~~Gv~~IE~g~~~~----------------------------~~~~~~~v~~~~~~~~~~~~~~~~ 90 (337)
T 3ble_A 39 STSEKLNIAKFLLQKLNVDRVEIASARV----------------------------SKGELETVQKIMEWAATEQLTERI 90 (337)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEEETTS----------------------------CTTHHHHHHHHHHHHHHTTCGGGE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCC----------------------------ChhHHHHHHHHHhhhhhhccCCCC
Q ss_pred EEEEEecCHHHHHHHHHcCCCEEEEec-----CCCCCCCCchh-hHHHHHHHHHHhcC-CCcEEEe------cCCCCHH-
Q 018919 207 ILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQLDYVPA-TIMALEEVVKATQG-RIPVFLD------GGVRRGT- 272 (349)
Q Consensus 207 v~vK~v~~~~~a~~a~~~G~d~I~v~~-----~gg~~~~~~~~-~~~~l~~i~~~~~~-~ipvia~------GGI~~~~- 272 (349)
-+.-.+.+..+++.+.++|+|.|.+.. |.-+.+..... .++.+.++.+..+. ...|.++ ++-.+.+
T Consensus 91 ~i~~l~~~~~~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~ 170 (337)
T 3ble_A 91 EILGFVDGNKTVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDY 170 (337)
T ss_dssp EEEEESSTTHHHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHH
T ss_pred eEEEEccchhhHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHH
Q ss_pred --HHHHHHH-hCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 273 --DVFKALA-LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 273 --dv~kal~-~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
++++.+. +||+.+.++-.. +..-+..+.++++.+++++
T Consensus 171 ~~~~~~~~~~~Ga~~i~l~DT~----G~~~P~~v~~lv~~l~~~~ 211 (337)
T 3ble_A 171 VKSLVEHLSKEHIERIFLPDTL----GVLSPEETFQGVDSLIQKY 211 (337)
T ss_dssp HHHHHHHHHTSCCSEEEEECTT----CCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEecCC----CCcCHHHHHHHHHHHHHhc
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=91.23 E-value=4.4 Score=38.65 Aligned_cols=115 Identities=17% Similarity=0.081 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEe
Q 018919 136 NVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGV 212 (349)
Q Consensus 136 ~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v 212 (349)
+.+.+.++++.+. |+..+-+.++. +++. .+.++.+|+.+ ++++.+-.-
T Consensus 170 e~~~~~a~~~~~~~G~~~~K~KvG~-----------------------------~~~~d~~~v~avR~~~~~~~l~vDaN 220 (398)
T 4dye_A 170 KAMAEHAVRVVEEGGFDAVKLKGTT-----------------------------DCAGDVAILRAVREALPGVNLRVDPN 220 (398)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCS-----------------------------CHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCC-----------------------------CHHHHHHHHHHHHHhCCCCeEEeeCC
Confidence 5566667777777 99999887641 1112 46688888886 566766431
Q ss_pred --cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEE
Q 018919 213 --LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGI 285 (349)
Q Consensus 213 --~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V 285 (349)
-+.++| +.+.+.|++.|- | --+ .++.+.++++.. .+||.++.-+.+..|+.++++.| +|.|
T Consensus 221 ~~w~~~~A~~~~~~l~~~~i~~iE-------q--P~~-d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~i~~~a~d~v 288 (398)
T 4dye_A 221 AAWSVPDSVRAGIALEELDLEYLE-------D--PCV-GIEGMAQVKAKV--RIPLCTNMCVVRFEDFAPAMRLNAVDVI 288 (398)
T ss_dssp TCSCHHHHHHHHHHHGGGCCSEEE-------C--CSS-HHHHHHHHHHHC--CSCEEESSSCCSGGGHHHHHHTTCCSEE
T ss_pred CCCCHHHHHHHHHHHhhcCCCEEc-------C--CCC-CHHHHHHHHhhC--CCCEEeCCcCCCHHHHHHHHHhCCCCEE
Confidence 345554 445567777662 1 112 677788888776 79999999999999999999986 8999
Q ss_pred EEchHH
Q 018919 286 FIGRPV 291 (349)
Q Consensus 286 ~ig~~~ 291 (349)
++--..
T Consensus 289 ~~k~~~ 294 (398)
T 4dye_A 289 HGDVYK 294 (398)
T ss_dssp EECHHH
T ss_pred EeCccc
Confidence 987544
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=91.10 E-value=1.2 Score=41.35 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe---
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV--- 212 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v--- 212 (349)
...+.+++..+.|++.|.|+..+.. |.. . ..+++- ++.++.+++.+++||.+-..
T Consensus 75 ~~~~~A~~~v~~GAdiIDIg~~Str--------------P~~---~----~vs~eee~~vV~~v~~~~~vplsI~DT~~~ 133 (310)
T 2h9a_B 75 DPVAWAKKCVEYGADIVALRLVSAH--------------PDG---Q----NRSGAELAEVCKAVADAIDVPLMIIGCGVE 133 (310)
T ss_dssp CHHHHHHHHHHTTCSEEEEECGGGC--------------TTT---T----CCCHHHHHHHHHHHHHHCSSCEEEECCSCH
T ss_pred HHHHHHHHHHHcCCcEEEEeCccCC--------------CCC---C----CCCHHHHHHHHHHHHHhCCceEEEECCCCC
Confidence 4456666777899999998875321 110 0 012333 56788998888999998666
Q ss_pred -cCHHHHHHHHHcCCC
Q 018919 213 -LTAEDARIAVQAGAA 227 (349)
Q Consensus 213 -~~~~~a~~a~~~G~d 227 (349)
.+++.++.++++|++
T Consensus 134 ~~~~~V~eaal~aga~ 149 (310)
T 2h9a_B 134 EKDAEIFPVIGEALSG 149 (310)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhCCC
Confidence 678889999999997
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=90.95 E-value=7.1 Score=36.88 Aligned_cols=120 Identities=14% Similarity=0.053 Sum_probs=80.3
Q ss_pred ChhHHHHHHHHHHH-cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 134 DRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 134 ~~~~~~~~~~~~~~-~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
+++...+.+++..+ .|++.+-+.++.. +++. .+.++.+|+.+ ++++.+
T Consensus 148 ~~~~~~~~~~~~~~~~G~~~~KiKvg~~----------------------------~~~~d~~~v~avR~a~g~~~~l~v 199 (382)
T 3dgb_A 148 DTAKDIAEAQKMLDLRRHRIFKLKIGAG----------------------------EVDRDLAHVIAIKKALGDSASVRV 199 (382)
T ss_dssp CHHHHHHHHHHHHHTTSCSEEEEECCSS----------------------------CHHHHHHHHHHHHHHHGGGSEEEE
T ss_pred ChHHHHHHHHHHHHhCCCCEEEEeeCCC----------------------------CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 55544444444444 6999998877531 1112 46688888887 467777
Q ss_pred EEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
..- -+.++| +.+.+.|+..|- | ...+..++.+.++++.. .+||+++.-+.+..|+.++++.| +
T Consensus 200 DaN~~~~~~~A~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~ipIa~dE~~~~~~~~~~~~~~~~~ 269 (382)
T 3dgb_A 200 DVNQAWDEAVALRACRILGGNGIDLIE-------Q-PISRNNRAGMVRLNASS--PAPIMADESIECVEDAFNLAREGAA 269 (382)
T ss_dssp ECTTCBCHHHHHHHHHHHHTTTCCCEE-------C-CBCTTCHHHHHHHHHHC--SSCEEESTTCSSHHHHHHHHHHTCC
T ss_pred eCCCCCCHHHHHHHHHHHhhcCcCeee-------C-CCCccCHHHHHHHHHhC--CCCEEeCCCcCCHHHHHHHHHcCCC
Confidence 532 345554 445667776652 1 11233577788888776 79999999999999999999975 7
Q ss_pred CEEEEchHH
Q 018919 283 SGIFIGRPV 291 (349)
Q Consensus 283 ~~V~ig~~~ 291 (349)
|.|++--..
T Consensus 270 d~v~~k~~~ 278 (382)
T 3dgb_A 270 SVFALKIAK 278 (382)
T ss_dssp SEEEECHHH
T ss_pred CEEEecccc
Confidence 999987543
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=90.95 E-value=0.54 Score=43.34 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=50.1
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-----HHHHHHHHHhcCCcEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-----DEDVKWLQTITKLPIL 208 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-----~~~i~~i~~~~~~pv~ 208 (349)
+.+...+.+++..+.|++.|.|+..+..+|.. ..+.+- ...|+.+++.+++||.
T Consensus 61 ~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~---------------------~v~~~eE~~RvvpvI~~l~~~~~vpiS 119 (297)
T 1tx2_A 61 EVDAAVRHAKEMRDEGAHIIDIGGESTRPGFA---------------------KVSVEEEIKRVVPMIQAVSKEVKLPIS 119 (297)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESCC----CC---------------------CCCHHHHHHHHHHHHHHHHHHSCSCEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCcCCCCCC---------------------CCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence 44556677777888999999988755322100 011111 2345777777799998
Q ss_pred EEEecCHHHHHHHHHcCCCEEE
Q 018919 209 VKGVLTAEDARIAVQAGAAGII 230 (349)
Q Consensus 209 vK~v~~~~~a~~a~~~G~d~I~ 230 (349)
+ ....++.++.|+++|++.|-
T Consensus 120 I-DT~~~~V~~aAl~aGa~iIN 140 (297)
T 1tx2_A 120 I-DTYKAEVAKQAIEAGAHIIN 140 (297)
T ss_dssp E-ECSCHHHHHHHHHHTCCEEE
T ss_pred E-eCCCHHHHHHHHHcCCCEEE
Confidence 7 56788999999999998873
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=0.56 Score=43.71 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=34.5
Q ss_pred HHHHHHHHHhc-CCcEEE-EEecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTIT-KLPILV-KGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~v-K~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.+.++++.. ++||++ .++.+.+++.+++.+|||+|.+.
T Consensus 244 ~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~~GAd~V~ig 285 (332)
T 1vcf_A 244 ARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVA 285 (332)
T ss_dssp HHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHhCCChHhhh
Confidence 77888898888 799876 44789999999999999999984
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=6.1 Score=36.35 Aligned_cols=110 Identities=26% Similarity=0.331 Sum_probs=74.8
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCC-------------------
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGV------------------- 268 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI------------------- 268 (349)
.+|++|+... +.|+|.+-++. ||-+..++.| -.++.|.+|.+.+ .+|++.=||=
T Consensus 153 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~--~vpLVlHGgSsv~~~~~~~~~~~gg~~~~ 230 (305)
T 1rvg_A 153 TNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV--PAPLVLHGASAVPPELVERFRASGGEIGE 230 (305)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC--CSCEEECSCCCCCHHHHHHHHHTTCCCCS
T ss_pred CCHHHHHHHHHHHCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhc--CCCEEEeCCCCCcHHHHHHHHhhcccccc
Confidence 4678887766 59999999873 5544322222 2578899999988 6999998865
Q ss_pred --C-CHHHHHHHHHhCCCEEEEchHHHHHHhh-------cC-----H-HHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 269 --R-RGTDVFKALALGASGIFIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 269 --~-~~~dv~kal~~GA~~V~ig~~~l~~~~~-------~G-----~-~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
. .-+++.|++.+|..-|=|+|-+-++... .. + .-+....+.+++.++..|..+|..
T Consensus 231 ~~G~p~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs~ 302 (305)
T 1rvg_A 231 AAGIHPEDIKKAISLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302 (305)
T ss_dssp CBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHCCCeEEEEChHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3 3467888999999999999976554321 11 1 123334456677777777777764
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=90.84 E-value=0.31 Score=43.21 Aligned_cols=40 Identities=28% Similarity=0.274 Sum_probs=35.2
Q ss_pred HHHHHHHHHhc-CCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++++++.+ ++|+++.+ +.++|+++.+. .|||+|++.+
T Consensus 168 ~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGS 209 (228)
T 3vzx_A 168 IEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGN 209 (228)
T ss_dssp HHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECT
T ss_pred HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEECh
Confidence 57899999998 79999987 68999999998 7999999953
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.82 E-value=0.61 Score=43.37 Aligned_cols=73 Identities=23% Similarity=0.169 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-----HHHHHHHHHhc-CCcE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-----DEDVKWLQTIT-KLPI 207 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-----~~~i~~i~~~~-~~pv 207 (349)
+.+...+.+++..+.|++.|.|+..+..+| .. .+.+- ...|+.+++.+ ++||
T Consensus 63 ~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG-~~---------------------v~~~eEl~Rv~pvI~~l~~~~~~vpI 120 (318)
T 2vp8_A 63 SDAAARDAVHRAVADGADVIDVGGVKAGPG-ER---------------------VDVDTEITRLVPFIEWLRGAYPDQLI 120 (318)
T ss_dssp -CHHHHHHHHHHHHTTCSEEEEC--------------------------------CHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCC-CC---------------------CCHHHHHHHHHHHHHHHHhhCCCCeE
Confidence 456666777888889999998876543222 10 11111 23477778777 8999
Q ss_pred EEEEecCHHHHHHHHHcCCCEE
Q 018919 208 LVKGVLTAEDARIAVQAGAAGI 229 (349)
Q Consensus 208 ~vK~v~~~~~a~~a~~~G~d~I 229 (349)
.+ ....++.++.|+++|++.|
T Consensus 121 SI-DT~~~~VaeaAl~aGa~iI 141 (318)
T 2vp8_A 121 SV-DTWRAQVAKAACAAGADLI 141 (318)
T ss_dssp EE-ECSCHHHHHHHHHHTCCEE
T ss_pred EE-eCCCHHHHHHHHHhCCCEE
Confidence 87 5678999999999999965
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=3.5 Score=39.31 Aligned_cols=123 Identities=18% Similarity=0.211 Sum_probs=81.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch--HHHHHHHHHhcCCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM--DEDVKWLQTITKLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~pv~vK 210 (349)
.+.+...+.++++.++|++++-...=.|.. .|. .+ ..... ++.++++++..++|++.
T Consensus 153 es~e~a~~~a~~~k~aGa~~vk~q~fkprt------------s~~-----~f---~gl~~egl~~L~~~~~~~Gl~~~t- 211 (385)
T 3nvt_A 153 ESYEQVAAVAESIKAKGLKLIRGGAFKPRT------------SPY-----DF---QGLGLEGLKILKRVSDEYGLGVIS- 211 (385)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECBSSCCCS------------STT-----SC---CCCTHHHHHHHHHHHHHHTCEEEE-
T ss_pred CCHHHHHHHHHHHHHcCCCeEEcccccCCC------------ChH-----hh---cCCCHHHHHHHHHHHHHcCCEEEE-
Confidence 477788899999999999987643321110 010 01 11112 56688888888999985
Q ss_pred EecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCC-CCHHHHHHHHH----hCCCEE
Q 018919 211 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV-RRGTDVFKALA----LGASGI 285 (349)
Q Consensus 211 ~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI-~~~~dv~kal~----~GA~~V 285 (349)
.+.+++.+..+.+. +|.+.+...- ......+..+.+ -+.||+..-|. .+.+|+..++. .|..-|
T Consensus 212 e~~d~~~~~~l~~~-vd~lkIgs~~-------~~n~~LL~~~a~---~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i 280 (385)
T 3nvt_A 212 EIVTPADIEVALDY-VDVIQIGARN-------MQNFELLKAAGR---VDKPILLKRGLSATIEEFIGAAEYIMSQGNGKI 280 (385)
T ss_dssp ECCSGGGHHHHTTT-CSEEEECGGG-------TTCHHHHHHHHT---SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCE
T ss_pred ecCCHHHHHHHHhh-CCEEEECccc-------ccCHHHHHHHHc---cCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 57788888888888 9999984321 112345555443 27899999999 88888877665 476544
Q ss_pred EE
Q 018919 286 FI 287 (349)
Q Consensus 286 ~i 287 (349)
.+
T Consensus 281 ~L 282 (385)
T 3nvt_A 281 IL 282 (385)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=90.74 E-value=0.41 Score=45.73 Aligned_cols=124 Identities=7% Similarity=0.004 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEEEe
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVKGV 212 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK~v 212 (349)
+.+.+.++++.+.|++++.++++.. ..|. +. ..+.+. .+.++.+|+.+ +++|.+-.-
T Consensus 150 e~~~~~a~~~~~~Gf~~vKik~g~~----------~~~~-~~---------~~~~~~~~e~v~avR~~~g~d~~l~vDan 209 (392)
T 3p3b_A 150 ALMQEEAMQGYAKGQRHFKIKVGRG----------GRHM-PL---------WEGTKRDIAIVRGISEVAGPAGKIMIDAN 209 (392)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCHH----------HHTS-CH---------HHHHHHHHHHHHHHHHHHCTTCCEEEECT
T ss_pred HHHHHHHHHHHHhCCCEEEECcCcC----------cccC-Cc---------cccHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 6677777888889999999887421 0010 00 001122 56788888876 577876431
Q ss_pred --cCHHHHHH----HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 213 --LTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 213 --~~~~~a~~----a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
-+.+++.+ +.+.|++.|- .. +. ..++.+.++++.+. .++||++++ +.+..++.++++.| +
T Consensus 210 ~~~~~~~ai~~~~~l~~~~i~~iE---~P---~~---~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~ 279 (392)
T 3p3b_A 210 NAYNLNLTKEVLAALSDVNLYWLE---EA---FH---EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRV 279 (392)
T ss_dssp TCCCHHHHHHHHHHTTTSCEEEEE---CS---SS---CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEe---cC---Cc---ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCC
Confidence 35666543 3344444331 10 11 35677777777620 279999999 99999999999987 7
Q ss_pred CEEEEch
Q 018919 283 SGIFIGR 289 (349)
Q Consensus 283 ~~V~ig~ 289 (349)
|.|++--
T Consensus 280 d~v~ik~ 286 (392)
T 3p3b_A 280 DVLQYDI 286 (392)
T ss_dssp CEECCBT
T ss_pred CEEEeCc
Confidence 9998843
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.73 E-value=4.4 Score=37.24 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=44.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV 212 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v 212 (349)
.+.+...+.+++..+.|++.|.|+.+.+..... .+++ .+...|+.+++.+++||.+ ..
T Consensus 34 ~~~~~a~~~A~~~v~~GAdiIDIg~g~~~v~~~-eem~--------------------rvv~~i~~~~~~~~vpisI-DT 91 (300)
T 3k13_A 34 KKYDEALSIARQQVEDGALVIDVNMDDGLLDAR-TEMT--------------------TFLNLIMSEPEIARVPVMI-DS 91 (300)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEEECCCTTSCHH-HHHH--------------------HHHHHHHTCHHHHTSCEEE-EC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH-HHHH--------------------HHHHHHHHhhhcCCCeEEE-eC
Confidence 456777778888889999999998864321000 0000 0012233333456778776 45
Q ss_pred cCHHHHHHHHH--cCCCEE
Q 018919 213 LTAEDARIAVQ--AGAAGI 229 (349)
Q Consensus 213 ~~~~~a~~a~~--~G~d~I 229 (349)
..++.++.+++ +|++.|
T Consensus 92 ~~~~V~eaaL~~~~Ga~iI 110 (300)
T 3k13_A 92 SKWEVIEAGLKCLQGKSIV 110 (300)
T ss_dssp SCHHHHHHHHHHCSSCCEE
T ss_pred CCHHHHHHHHHhcCCCCEE
Confidence 66777777777 677644
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=2.5 Score=46.90 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-----cCCCc-EEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIP-VFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ip-via~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
++|..|++.|+..|++|-.+-..-....|.+-++..+..++ +.++- |+=+|-+|+.-+++-.+-.||++|-=.=
T Consensus 591 ~~a~~av~~g~~iliLsDr~~~~~~~~ip~lla~~avh~~L~~~~~R~~~~lvvesg~~r~~Hh~a~l~GyGA~av~Pyl 670 (1479)
T 1ea0_A 591 QETEDAVRGGATHVILTDEAMGPARAAIPAILATGAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYL 670 (1479)
T ss_dssp HHHHHHHHHTCCEEEEECTTCBTTEEECCHHHHHHHHHHHHHTTTCGGGCEEEEECSSCCSHHHHHHHHTTTCSEEECHH
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCccCcCHHHHHHHHHHHHHhcCccccceEEEEeCCchhHHHHHHHHhcCccccCHHH
Confidence 45788899999999999654211112245566666666654 22344 5556889999999888889999997333
Q ss_pred HH--HHHHhhcC-------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 290 PV--VYSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 290 ~~--l~~~~~~G-------~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
+| +..+...| .+.+.++.+.+.++|.+.|..+|.++++.-++..+.
T Consensus 671 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~~Gl~KimskmGIst~~sY~gaqiF 725 (1479)
T 1ea0_A 671 AQEAIAERHRRGLFGSMPLEKGMANYKKAIDDGLLKIMSKMGISVISSYRGGGNF 725 (1479)
T ss_dssp HHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHTTSCCE
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccHhhhhhcCCceee
Confidence 33 22222233 357899999999999999999999999988776554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 349 | ||||
| d1goxa_ | 359 | c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia | 1e-110 | |
| d1tb3a1 | 349 | c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus | 1e-98 | |
| d1p4ca_ | 353 | c.1.4.1 (A:) Membrane-associated (S)-mandelate deh | 8e-96 | |
| d1kbia1 | 414 | c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal | 9e-95 | |
| d1p0ka_ | 329 | c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera | 5e-64 | |
| d1vcfa1 | 310 | c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i | 3e-60 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 7e-14 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 1e-13 | |
| d1ea0a2 | 771 | c.1.4.1 (A:423-1193) Alpha subunit of glutamate sy | 7e-09 | |
| d1ofda2 | 809 | c.1.4.1 (A:431-1239) Alpha subunit of glutamate sy | 2e-08 | |
| d1tv5a1 | 409 | c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase { | 2e-05 | |
| d1gtea2 | 312 | c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas | 1e-04 | |
| d1juba_ | 311 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco | 3e-04 | |
| d1d3ga_ | 367 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human ( | 0.002 |
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 324 bits (832), Expect = e-110
Identities = 303/358 (84%), Positives = 323/358 (90%), Gaps = 21/358 (5%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 183 NFQGLDLGKMD---------------------EDVKWLQTITKLPILVKGVLTAEDARIA 221
NF+G+DLGKMD +DV WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 339
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 302 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 294 bits (752), Expect = 1e-98
Identities = 154/346 (44%), Positives = 214/346 (61%), Gaps = 15/346 (4%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGE-YATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T+ G +IS PI I+PTA +A P+GE A A + S S S + VA+
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G R+FQLY+ D + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L + LK
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLK 181
Query: 183 NFQGLDLGKMD--------------EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAG 228
+ + L K D+ LQ+IT+LPI++KG+LT EDA +A++ G
Sbjct: 182 DLRALKEEKPTQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQG 241
Query: 229 IIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288
I+VSNHG RQLD V A+I AL EVV A +G+I V++DGGVR GTDV KALALGA IF+G
Sbjct: 242 IVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLG 301
Query: 289 RPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334
RP+++ LA +GE GV+ VL++L E M LSGC+S+ EI+ D I
Sbjct: 302 RPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLI 347
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 286 bits (733), Expect = 8e-96
Identities = 140/355 (39%), Positives = 209/355 (58%), Gaps = 24/355 (6%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ +
Sbjct: 2 LFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQA 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
VLG + SMP++I PT + P+G+ A ARAA+ AG LS+ S S+E++A G
Sbjct: 62 EVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDG 121
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
+FQ R + +V +A G+ + LT D G RE D+ NRF +PPFLTLKN
Sbjct: 122 DLWFQ-LYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKN 180
Query: 184 FQGLDLGKMD---------------------EDVKWLQTITKLPILVKGVLTAEDARIAV 222
F+G+DLGKMD E ++WL+ + +LVKG+L+AEDA +
Sbjct: 181 FEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCI 240
Query: 223 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282
GA G+I+SNHG RQLD + + L + V + PV +D G RRG+D+ KALALGA
Sbjct: 241 AEGADGVILSNHGGRQLDCAISPMEVLAQSVA--KTGKPVLIDSGFRRGSDIVKALALGA 298
Query: 283 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 337
+ +GR +Y LAA GE GV VL +L+ + + +A GC + ++ D++ E
Sbjct: 299 EAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 353
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 286 bits (731), Expect = 9e-95
Identities = 133/373 (35%), Positives = 207/373 (55%), Gaps = 26/373 (6%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 22 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 81
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGE------YATARAASAAGTIMTLSSWSTSSV 114
++T +LG + +P ++ TA+ K+ +P I TL+S S +
Sbjct: 82 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 141
Query: 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
E A + I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 142 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 201
Query: 175 LPPFLTLKNFQG---------------LDLGKMDEDVKWLQTITKLPILVKGVLTAEDAR 219
+ +D +D++ L+ TKLPI++KGV ED
Sbjct: 202 NTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVI 261
Query: 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-----GRIPVFLDGGVRRGTDV 274
A + G +G+++SNHG RQLD+ A I L E + + ++ VF+DGGVRRGTDV
Sbjct: 262 KAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDV 321
Query: 275 FKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334
KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E+ D +
Sbjct: 322 LKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 381
Query: 335 VTEWDASLPRPVP 347
+ VP
Sbjct: 382 DLSTLKARTVGVP 394
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Score = 204 bits (519), Expect = 5e-64
Identities = 59/328 (17%), Positives = 117/328 (35%), Gaps = 46/328 (14%)
Query: 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEYATARAA 97
I F L + + ++D++T + S PI I T E + ARAA
Sbjct: 3 TGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAA 62
Query: 98 SAAGTIMTLSSWSTSSVEEVASTGPGI------RFFQLYVYKDRNVVAQLVRRAERAGFK 151
S AG + + S ++ + I AQ E G
Sbjct: 63 SQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGAN 122
Query: 152 AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG 211
A+ + ++ + ++ + ++ + + +P++VK
Sbjct: 123 ALQIHLNVIQEIVMPEGDRSFSGAL-----------------KRIEQICSRVSVPVIVKE 165
Query: 212 VLT---AEDARIAVQAGAAGIIVSNHGARQLDYVPAT----------------IMALEEV 252
V A +AGAA + + +G + +L E+
Sbjct: 166 VGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEI 225
Query: 253 VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 312
+ GG++ DV KA+ALGAS + + +L GE+G+ ++++ E
Sbjct: 226 RSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILE 284
Query: 313 EFELAMALSGCRSLKEITRDHIVTEWDA 340
E +L M + G R++ ++ + +V + +
Sbjct: 285 ELKLIMTVLGARTIADLQKAPLVIKGET 312
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Score = 193 bits (492), Expect = 3e-60
Identities = 63/314 (20%), Positives = 99/314 (31%), Gaps = 33/314 (10%)
Query: 38 ENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATAR 95
+ R + L + +S++D+ T LG + P +I + A A
Sbjct: 1 KTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAE 60
Query: 96 AASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155
AA A G M L S A F++ + ++ A +
Sbjct: 61 AAEALGVGMMLGSGRILLERPEALRS-----FRVRKVAPKALL-----IANLGLAQLRRY 110
Query: 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLT- 214
D + L +G + + P++VK V
Sbjct: 111 GRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHG 170
Query: 215 --AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV-----------------VKA 255
E A A + V+ G V + E V+
Sbjct: 171 LSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVRE 230
Query: 256 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315
+P+ GGV GTD KALALGA + + RP++ A EG + V + EE
Sbjct: 231 VLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLR-PALEGAERVAAWIGDYLEELR 289
Query: 316 LAMALSGCRSLKEI 329
A+ G R+ KE
Sbjct: 290 TALFAIGARNPKEA 303
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 68.0 bits (165), Expect = 7e-14
Identities = 27/188 (14%), Positives = 56/188 (29%), Gaps = 29/188 (15%)
Query: 134 DRNVVAQLVRRAERAGFKAI-ALTVDTPRLGRREAD-----IKNRFTLPPFLTLKNFQ-- 185
+++++ A G I A T + + D I R + +
Sbjct: 21 SSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKE 80
Query: 186 -------GLDL------------GKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 226
++ +DE V +++T ++ + T E+A+ A + G
Sbjct: 81 VDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGF 140
Query: 227 AGIIVSNHGARQLDYVPATIMALEEVVK--ATQGRIPVFLDGGVRRGTDVFKALALGASG 284
I + HG + +K V +G V + + LG
Sbjct: 141 DYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHC 200
Query: 285 IFIGRPVV 292
+G +
Sbjct: 201 SVVGGAIT 208
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 67.2 bits (163), Expect = 1e-13
Identities = 24/184 (13%), Positives = 53/184 (28%), Gaps = 29/184 (15%)
Query: 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA-----DIKNRFTLPPF---------- 178
++ + + A+ AG I + + PP
Sbjct: 31 TGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTE 90
Query: 179 -------------LTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAG 225
+ D + ++ ++ +L+ + T ++ +A QAG
Sbjct: 91 VDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAG 150
Query: 226 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 285
+ + G A + + + I V +G + + K LG +GI
Sbjct: 151 IDFVGTTLSGYTPYSRQEAGPD-VALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGI 209
Query: 286 FIGR 289
+G
Sbjct: 210 VVGG 213
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} Length = 771 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Score = 54.9 bits (132), Expect = 7e-09
Identities = 39/195 (20%), Positives = 63/195 (32%), Gaps = 47/195 (24%)
Query: 196 VKWLQTIT-KLPILVKGVLTAEDARIA---VQAGAAGIIVSNHGARQLDYVPATIM---- 247
+ L+ I + VK V + IA +A A I++S + P T +
Sbjct: 562 IYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSG-GTGASPQTSIKFAG 620
Query: 248 -----ALEEVVKA-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR-------- 289
L EV + + R+ + DGG++ G D+ A LGA IG
Sbjct: 621 LPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGC 680
Query: 290 -------------------PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 330
+ + V + L EE +A G RSL E+
Sbjct: 681 IMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVI 740
Query: 331 -RDHIVTEWDASLPR 344
R ++ +
Sbjct: 741 GRTDLLHQVSRGAEH 755
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Score = 53.4 bits (128), Expect = 2e-08
Identities = 35/187 (18%), Positives = 58/187 (31%), Gaps = 47/187 (25%)
Query: 196 VKWLQTIT-KLPILVKGVLTAEDARIA---VQAGAAGIIVS-----NHGARQ--LDYV-- 242
+ L I + + VK V IA +A A I +S + + +
Sbjct: 589 IYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGS 648
Query: 243 PATIMALEEVVKA-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR-------- 289
P + + EV + + R+ + DGG++ G DV A +GA G
Sbjct: 649 P-WELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGC 707
Query: 290 -------------------PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 330
+ V + EE +A G RSL +I
Sbjct: 708 IMARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDII 767
Query: 331 -RDHIVT 336
R ++
Sbjct: 768 GRTDLLK 774
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} Length = 409 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Score = 43.8 bits (102), Expect = 2e-05
Identities = 40/236 (16%), Positives = 72/236 (30%), Gaps = 38/236 (16%)
Query: 120 TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179
PG+R Q + + ++ + L + + N+
Sbjct: 190 NTPGLRDNQ-----EAGKLKNIILSVKEE---IDNLEKNNIMNDESTYNEDNKIVEKKNN 241
Query: 180 TLKNFQGLDLGKMDEDVKWLQTITKLPILVK------GVLTAEDARIAVQAGAAGIIVSN 233
KN + D + + T K + VK E A + ++ G+I+SN
Sbjct: 242 FNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISN 301
Query: 234 -HGARQLDYVPATIM--------------ALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 278
+ E+ T +IP+ GG+ G D + +
Sbjct: 302 TTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKI 361
Query: 279 ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT-RDH 333
GAS + +V+ G K ++ L + G +LKE R H
Sbjct: 362 EAGASVCQLYSCLVF----NGMKSAVQIKRELNHL----LYQRGYYNLKEAIGRKH 409
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 243 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 302
P + A+ + +A G P+ GG+ + L GAS + + V +
Sbjct: 240 PIALRAVTTIARALPG-FPILATGGIDSAESGLQFLHSGASVLQVCSAVQN----QDFTV 294
Query: 303 VRRVLEMLREEFE 315
++ L+
Sbjct: 295 IQDYCTGLKALLY 307
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Score = 39.6 bits (91), Expect = 3e-04
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 235 GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294
G P + + + I + GG+ G D F+ L GA+ + IG +
Sbjct: 218 GIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK- 276
Query: 295 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 329
EG R+++ L E M G +S+ +
Sbjct: 277 ---EGPAIFDRIIKELEE----IMNQKGYQSIADF 304
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 367 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.002
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 251 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 310
E+ TQGR+P+ GGV G D + + GAS + + + + G V +V L
Sbjct: 290 EMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF----WGPPVVGKVKREL 345
Query: 311 REEFELAMALSGCRSLKEIT-RDH 333
+ G + + DH
Sbjct: 346 EAL----LKEQGFGGVTDAIGADH 365
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 100.0 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 100.0 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 100.0 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 100.0 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 100.0 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 100.0 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 99.96 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 99.95 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 99.95 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 99.94 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 99.94 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 99.93 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.91 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.89 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.87 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.87 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 99.87 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.85 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 99.84 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 99.82 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 99.79 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 99.71 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.59 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.57 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 99.38 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 99.22 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 99.2 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 99.02 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 98.96 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 98.95 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 98.91 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 98.78 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 98.73 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 98.72 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.71 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.69 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.68 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 98.66 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.66 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 98.62 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.62 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 98.58 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 98.55 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 98.51 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 98.49 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 98.49 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 98.49 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.47 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 98.47 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 98.41 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 98.39 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 98.38 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 98.35 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 98.32 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 98.21 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.18 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 98.17 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 98.17 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 98.17 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 98.13 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 98.09 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 98.05 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 97.96 | |
| d1vpxa_ | 218 | Decameric fructose-6-phosphate aldolase/transaldol | 97.93 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 97.93 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 97.9 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 97.75 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 97.72 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 97.69 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 97.66 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 97.65 | |
| d1wx0a1 | 211 | Decameric fructose-6-phosphate aldolase/transaldol | 97.62 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 97.61 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 97.6 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.34 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.33 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.31 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.25 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.24 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 97.18 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 97.11 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.9 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 96.84 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 96.8 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 96.79 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 96.65 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 96.64 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 96.57 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 96.52 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 96.47 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.44 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 96.23 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 96.17 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 96.11 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 96.03 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 95.98 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 95.93 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 95.92 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 95.86 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 95.84 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 95.5 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 95.49 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 95.49 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 95.45 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 95.45 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 95.44 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 95.4 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 95.4 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 95.25 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 95.23 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 95.04 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 95.01 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 94.8 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 94.78 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 94.65 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 94.54 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 94.54 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 94.41 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 94.29 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 93.89 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 93.67 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 93.5 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 93.46 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 93.36 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 93.18 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 93.08 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 93.03 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 92.99 | |
| d1onra_ | 316 | Transaldolase {Escherichia coli [TaxId: 562]} | 92.81 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 92.51 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 92.44 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 92.41 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 92.21 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 92.15 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 92.11 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 92.1 | |
| d1vlia2 | 295 | Spore coat polysaccharide biosynthesis protein Sps | 92.01 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 91.86 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 91.85 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 91.78 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 91.77 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 91.77 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 91.6 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 91.6 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 91.52 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 91.29 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 91.25 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 90.94 | |
| d1geha1 | 307 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 90.91 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 90.76 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 90.71 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 90.59 | |
| d1wdda1 | 325 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {R | 90.35 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 90.35 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 90.2 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 90.02 | |
| d2basa1 | 261 | Hypothetical protein YkuI, N-terminal domain {Baci | 90.0 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 90.0 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 89.84 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 89.79 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 89.79 | |
| d2d69a1 | 291 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 89.76 | |
| d1izca_ | 299 | Macrophomate synthase {Macrophoma commelinae [TaxI | 89.62 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 89.41 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 89.08 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 88.99 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 88.9 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 88.89 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 88.74 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 88.58 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 88.5 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 88.21 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 88.2 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 87.76 | |
| d2g50a2 | 282 | Pyruvate kinase, N-terminal domain {Rabbit (Orycto | 87.72 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 87.49 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 87.2 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 87.1 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 86.62 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 86.26 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 86.15 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 85.79 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 85.75 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 85.72 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 85.63 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 85.38 | |
| d1f61a_ | 418 | Isocitrate lyase {Mycobacterium tuberculosis [TaxI | 85.31 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 85.21 | |
| d1vkfa_ | 172 | Glycerol uptake operon antiterminator-related prot | 84.75 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 84.56 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 84.54 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 84.5 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 84.37 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 84.26 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 84.25 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 84.19 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 84.0 | |
| d1xrsb1 | 160 | D-lysine 5,6-aminomutase beta subunit KamE, C-term | 83.9 | |
| d2e1da1 | 319 | Transaldolase {Mouse (Mus musculus) [TaxId: 10090] | 83.79 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 83.74 | |
| d1vqta1 | 198 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 83.29 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 82.33 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 81.93 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 81.86 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 81.5 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 81.47 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 81.3 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 81.26 | |
| d1dcfa_ | 134 | Receiver domain of the ethylene receptor {Thale cr | 81.18 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 81.05 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 81.04 | |
| d1eyea_ | 270 | Dihydropteroate synthetase {Mycobacterium tubercul | 80.62 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 80.57 | |
| d1k68a_ | 140 | Response regulator for cyanobacterial phytochrome | 80.26 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 80.13 |
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.3e-71 Score=532.85 Aligned_cols=332 Identities=47% Similarity=0.770 Sum_probs=311.7
Q ss_pred CCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccccc
Q 018919 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (349)
Q Consensus 4 ~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~ 83 (349)
++||+|||+.||++||+.+|+|++||++||.|+++|+++||+|+|+||+|++++++||+|+|+|++++.||+||||++++
T Consensus 2 ~~~i~d~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lG~~l~~P~~Iapmtgg~ 81 (349)
T d1tb3a1 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS 81 (349)
T ss_dssp CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHHCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred cccHHHHHHHHHHHCCHHHHHHHhccccccHHHHHHHHHHHhccEEcccccCCCCCCCceeECCcCccceEEEcchhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 84 l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
+.++++|..+|++|+++|+++++|++++.+.|++.+..+ ++.|+|+|.+.+.+...+++++++++|+.++.+++|.|..
T Consensus 82 ~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~ 161 (349)
T d1tb3a1 82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL 161 (349)
T ss_dssp GTCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSC
T ss_pred ccccchhhHHHHhhhhcccceeecccccccchhhhhhccCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhh
Confidence 999999999999999999999999999999999988777 7899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCcCcccccC-------------CCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCE
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQ-------------GLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAG 228 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~-------------~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~ 228 (349)
++|++|+++++..|..+...... +..++.+ |++++|+|+.++.|+++|++.+++++..|.++|+|+
T Consensus 162 ~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~Kgi~~~~da~~a~~~G~d~ 241 (349)
T d1tb3a1 162 GNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQG 241 (349)
T ss_dssp CCCHHHHHTTCCCCC----CCSCCCCC-------------CCCCHHHHHHHHTTCCSCEEEEEECSHHHHHHHHHTTCSE
T ss_pred cchhhhhhccccCCcccchhhhhhhhhccccccccccccCCCCCHHHHHHHHHhcCCCcccchhhhhHHHHHHHHhhccc
Confidence 99999999999877654332221 1234556 999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHH
Q 018919 229 IIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLE 308 (349)
Q Consensus 229 I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~ 308 (349)
|.+||||||++++++++.+.++++++.+++++|||+|||||+|.||+|||+|||++|+|||||+|++++.|++||+++++
T Consensus 242 i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~~la~~G~~gv~~~l~ 321 (349)
T d1tb3a1 242 IVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLD 321 (349)
T ss_dssp EEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeccccccccccccchhhcceeeeccCCCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHHHHHhccHHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhhhccccee
Q 018919 309 MLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 309 ~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
.+++||+..|.++|+++++||+++.++
T Consensus 322 ~l~~EL~~~M~l~G~~~i~eL~~~~i~ 348 (349)
T d1tb3a1 322 ILTAELHRCMTLSGCQSVAEISPDLIQ 348 (349)
T ss_dssp HHHHHHHHHHHHHTCSBGGGCCGGGBC
T ss_pred HHHHHHHHHHHHhCCCCHHHcCHhhee
Confidence 999999999999999999999998875
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=9.1e-68 Score=509.68 Aligned_cols=335 Identities=88% Similarity=1.307 Sum_probs=317.6
Q ss_pred CCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccccc
Q 018919 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (349)
Q Consensus 4 ~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~ 83 (349)
++|++|||+.||++||+.+|+|+.||++||.|+++|+++|++|+|+||+|++++++||||+|+|++++.||+||||++++
T Consensus 3 ~~~i~d~~~~A~~~lp~~~~~y~~gga~~~~t~~~N~~~Fd~i~l~pr~L~d~~~iDlst~~lG~~~~~P~~IspMtgg~ 82 (359)
T d1goxa_ 3 ITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQK 82 (359)
T ss_dssp CCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSCGG
T ss_pred ccCHHHHHHHHHHhCCHHHHHHHhccCCccHHHHHHHHHHHhcceecccccCCCCCCCceeECCcccCCceeeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 84 l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
..++++|..++++|.+.|+++++++++..+.+++.+..+++.|+|+|...+......++++++.+|++++.+++|.|..+
T Consensus 83 ~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~~~ 162 (359)
T d1goxa_ 83 MAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 162 (359)
T ss_dssp GTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCC
T ss_pred cCCCchHHHhhhhHHhhCCcccccccccccchhhHHhcCCCcccccccchhHHHHHHHHHHHHHhhcccccccccchhhh
Confidence 99999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred chhHHhhhhcCCCCcCcccccC--------------------CCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHH
Q 018919 164 RREADIKNRFTLPPFLTLKNFQ--------------------GLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAV 222 (349)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~--------------------~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~ 222 (349)
.|+++.++++..|......+.. ...++.+ |++++++++.++.|+++|++.+.+++..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~~~da~~a~ 242 (359)
T d1goxa_ 163 RREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLAV 242 (359)
T ss_dssp CCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHHH
T ss_pred hhhhhccccccCCcccchhhhhhhccccCcccccccHHHHHHhhcCCCCCHHHHHHHHhhcccceeeecccchHHHHHHH
Confidence 9999999988777654433211 1356667 999999999999999999999999999999
Q ss_pred HcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHH
Q 018919 223 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 302 (349)
Q Consensus 223 ~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~g 302 (349)
++|++++.++||||+++++++++.+.+.++++.+++++|||+|||||+|.||+|||+||||+|++||||+++++..|++|
T Consensus 243 ~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~g~~g 322 (359)
T d1goxa_ 243 QHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAG 322 (359)
T ss_dssp HTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHH
T ss_pred HccccceecccccccccccccchhhhchhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCChhhhcccceeccc
Q 018919 303 VRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 338 (349)
Q Consensus 303 v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 338 (349)
|+++++.+++||+..|.++|+++|+||+++.|+...
T Consensus 323 v~~~i~~l~~EL~~~M~l~G~~~i~~L~~~~l~~~~ 358 (359)
T d1goxa_ 323 VKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADW 358 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHcCHhhccCCC
Confidence 999999999999999999999999999999987554
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.8e-65 Score=498.42 Aligned_cols=347 Identities=38% Similarity=0.647 Sum_probs=308.9
Q ss_pred CCCCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccc
Q 018919 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTA 80 (349)
Q Consensus 1 ~~~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~ 80 (349)
|++++|++|||+.||++||+.+|+|++||++||.|+++|+++||+|+|+||+|++++++||+|+|+|++++.||+||||+
T Consensus 22 ~~~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~aFd~i~l~Pr~L~dvs~iDlst~~lG~~l~~P~~Isp~g 101 (414)
T d1kbia1 22 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATA 101 (414)
T ss_dssp GGGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCS
T ss_pred hhhcCCHHHHHHHHHHhCCHHHHHHHhccccchHHHHHHHHHHHhceeeccccCCCcCCCCceeECCccCCCCEEEChhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCh---hhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC---CceEEEEeecCChhHHHHHHHHHHHcCCCEEE
Q 018919 81 MQKMAHPE---GEYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (349)
Q Consensus 81 ~~~l~~~~---~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~---~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~ 154 (349)
++++.||. .+.+.++++...|+++++++.+..+++++.+..+ .+.|+|+|.+.+......++++++++|++++.
T Consensus 102 ~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~~~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~al~ 181 (414)
T d1kbia1 102 LCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALF 181 (414)
T ss_dssp CGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEE
T ss_pred hhcccCcchhHHHHHhhHHHhhhccccccccccccchHHHHHHhcCCccchhhcccccccHHHHHHHHHHHHHcCCcccc
Confidence 99998883 3344555555688999999999999999887765 45899999999999999999999999999999
Q ss_pred EecCCCCCCchhHHhhhhcCCCCcC----c---c-------cccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHH
Q 018919 155 LTVDTPRLGRREADIKNRFTLPPFL----T---L-------KNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDAR 219 (349)
Q Consensus 155 i~~d~p~~g~r~~d~~~~~~~p~~~----~---~-------~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~ 219 (349)
+|+|.|..+.|++|.++.+..+... . . .......++.+ |++++|+++.++.|+++|++.+.+++.
T Consensus 182 ~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~i~~i~~~~~~~~i~kgi~~~~da~ 261 (414)
T d1kbia1 182 VTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVI 261 (414)
T ss_dssp EECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEECSHHHHH
T ss_pred cccccccccccHHHHHhcccccccchhhhhcccccccccHHHHHHHhcccCCCHHHHHHHhccCCceEEeeccchhHHHH
Confidence 9999999999999998876533210 0 0 00111345567 999999999999999999999999999
Q ss_pred HHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 220 ~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
.+.++|+|+++++||||+++++.+++...++++.+.+ .+++|||+|||||+|.||+|||+||||+|+|||||+++
T Consensus 262 ~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgigrp~L~~ 341 (414)
T d1kbia1 262 KAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYA 341 (414)
T ss_dssp HHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred HHHhcCCcceeeccccccccccccccccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 9999999999999999999999999988888887654 35799999999999999999999999999999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceecccCCCCCCCCC
Q 018919 295 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLPRPVP 347 (349)
Q Consensus 295 ~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~~~~~~~ 347 (349)
+++.|++||.++++.|++||+..|.++|+++++||+++.|..+.-.++...+|
T Consensus 342 la~~G~egv~~~l~~l~~EL~~~M~l~G~~si~eL~~~~l~~~~~~~~~~~~p 394 (414)
T d1kbia1 342 NSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTLKARTVGVP 394 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTTTTCEECCCC
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCHHHccccccccccCCCC
Confidence 99999999999999999999999999999999999999998776666555555
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=3e-63 Score=476.62 Aligned_cols=331 Identities=41% Similarity=0.715 Sum_probs=306.0
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccc
Q 018919 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (349)
Q Consensus 3 ~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~ 82 (349)
+++|+.|||++||++||+..|+|+.||++||.|+++|+++||+|+|+||+|.+++++||+|+|+|++++.||+|+||+++
T Consensus 1 ~~~~~~d~~~~a~~~~p~~~~~y~~~ga~~~~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lGk~ls~Pi~Iapmtgg 80 (353)
T d1p4ca_ 1 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLN 80 (353)
T ss_dssp CCSSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHhccccchHHHHHHHHHHHhCcEEcccccCCCCCCCceEECCcCccCceeecccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 83 ~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
+..++++|..+|++|+++|++++++++++.+.+++.+..+...|+|.+. .+......+.++++..|++.+.+++|.|..
T Consensus 81 ~~~~~~~n~~lA~aA~~~~i~~~~gs~s~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~l~~~vd~~~~ 159 (353)
T d1p4ca_ 81 GALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYV-IHREIAQGMVLKALHTGYTTLVLTTDVAVN 159 (353)
T ss_dssp GGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCSCEEEEECC-SSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred ccccchhhHHHHHHHHHhhccccccccccccchhHHHhcCCceeeeecc-ccHHHHHHhHHHHHHcCCcceeeecccccc
Confidence 9999999999999999999999999999999999988877777777654 578888889999999999999999999999
Q ss_pred CchhHHhhhhcCCCCcCccccc--------------------CCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHH
Q 018919 163 GRREADIKNRFTLPPFLTLKNF--------------------QGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIA 221 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~--------------------~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a 221 (349)
+.+++|.++.+..|........ ....++.+ |++++++++.++.|+++|++.+.+++..+
T Consensus 160 g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~i~~kgv~~~~~~~~a 239 (353)
T d1p4ca_ 160 GYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 239 (353)
T ss_dssp CCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHH
T ss_pred CcchhhhhhhhcccchhhhhhhhhhccccccccccchhHHHHHhccCCCCCHHHHHHHHhccccchhhhcchhhhhHHHH
Confidence 9999999988776543322111 01345567 99999999999999999999999999999
Q ss_pred HHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHH
Q 018919 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 301 (349)
Q Consensus 222 ~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~ 301 (349)
.+.|+|++.++|||++++++.+++.+.+++++... ++|||+|||||+|.||+|||++|||+|++||||+++++..|++
T Consensus 240 ~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~~~--~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~~l~~~G~e 317 (353)
T d1p4ca_ 240 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT--GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGET 317 (353)
T ss_dssp HHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH--CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHH
T ss_pred HhcCCchhhhcccccccccccccchhcccchhccc--ccceeecCCcCchHHHHHHHHcCCCEEEEcHHHHHHHHhccHH
Confidence 99999999999999999999999999999998776 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceec
Q 018919 302 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 336 (349)
Q Consensus 302 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~ 336 (349)
||+++++.+++||+..|.++|+++|+||+++.|+.
T Consensus 318 gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~ 352 (353)
T d1p4ca_ 318 GVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQN 352 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHHhccC
Confidence 99999999999999999999999999999998864
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=6.5e-46 Score=352.35 Aligned_cols=278 Identities=21% Similarity=0.249 Sum_probs=222.1
Q ss_pred hccccccccccc--CCCCCCCcceeEcCeecCcceeecccccc-cccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 42 AFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQ-KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 42 ~~~~~~l~p~~l--~~~~~~d~s~~l~g~~~~~Pi~iApm~~~-~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.||+|.|+|++| .+++++||+|+|+|+++++||++|||+++ ...+++++.++|++|.+.|++++++++++.+.++..
T Consensus 4 gfddi~lvP~~l~~~d~~~vdlst~i~G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~~~~ 83 (329)
T d1p0ka_ 4 GLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPSE 83 (329)
T ss_dssp SGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTCHHH
T ss_pred CcceEEEECCCCCCCChhhCCCCEEECCEEcCCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccccchhHHH
Confidence 599999999999 57889999999999999999999999644 345778889999999999999999988776665533
Q ss_pred hhC------CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch
Q 018919 119 STG------PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (349)
Q Consensus 119 ~~~------~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (349)
... ..+.++|++............+.+++.|++++.+++++|....+... ..+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~------------------~~~~~~ 145 (329)
T d1p0ka_ 84 RLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEG------------------DRSFSG 145 (329)
T ss_dssp HHHHHHHHHHCSSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------------------------CTT
T ss_pred HhhhhhHhhhCCcceEEEeeccchhHHHHHHHHHHcCCCEEEecccccchhhhccc------------------cccccc
Confidence 211 02234444443333444555666788899999999999854222111 012223
Q ss_pred -HHHHHHHHHhcCCcEEEEEe---cCHHHHHHHHHcCCCEEEEecCCCCCCC----------------CchhhHHHHHHH
Q 018919 193 -DEDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLD----------------YVPATIMALEEV 252 (349)
Q Consensus 193 -~~~i~~i~~~~~~pv~vK~v---~~~~~a~~a~~~G~d~I~v~~~gg~~~~----------------~~~~~~~~l~~i 252 (349)
|+.++++++.++.|+++|++ .++++++.+.++|+|+|+++||||++++ .+.+....+.++
T Consensus 146 ~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 225 (329)
T d1p0ka_ 146 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEI 225 (329)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHHHHHHHH
Confidence 89999999999999999998 6789999999999999999999997643 345677888888
Q ss_pred HHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 253 VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 253 ~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
.... +++|||++|||+++.|++|||++|||+|++||+++|++++.|++||.++++.+++||+..|.++|+++++||++.
T Consensus 226 ~~~~-~~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l~al~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~ 304 (329)
T d1p0ka_ 226 RSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKA 304 (329)
T ss_dssp HHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBHHHHTTC
T ss_pred Hhhc-CCceEEEcCCcccHHHHHHHHHcCCCchhccHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCcC
Confidence 7765 479999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ceeccc
Q 018919 333 HIVTEW 338 (349)
Q Consensus 333 ~l~~~~ 338 (349)
.++..+
T Consensus 305 ~lv~~~ 310 (329)
T d1p0ka_ 305 PLVIKG 310 (329)
T ss_dssp CEEECH
T ss_pred CEEecc
Confidence 887554
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.3e-44 Score=338.05 Aligned_cols=273 Identities=25% Similarity=0.232 Sum_probs=218.4
Q ss_pred HHHhhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHH
Q 018919 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE 115 (349)
Q Consensus 38 ~n~~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e 115 (349)
+|+.+|++|+|+||+|+ +++++||||+|+|+++++||++|||++++..++..+.+++++|++.|+++++++++..+.+
T Consensus 1 ~n~~~f~~~~~~p~~L~~~d~~~vDlst~~~G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~~~~ 80 (310)
T d1vcfa1 1 KTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILLER 80 (310)
T ss_dssp CCCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHHHHC
T ss_pred CCcccccceEEEcccCCCCCcccCcCCeEECCEEcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcCCCeEeccchhcchh
Confidence 48899999999999995 7889999999999999999999999988777777788999999999999999877532222
Q ss_pred H-------HHhhCC-CceEEEEeecCChhHHHHHHHHH-HHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCC
Q 018919 116 E-------VASTGP-GIRFFQLYVYKDRNVVAQLVRRA-ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (349)
Q Consensus 116 ~-------i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~-~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (349)
+ +.+..+ ...++|++.....+...+.+.++ +..+++++.++++++.. . .. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~---~~-~---------- 140 (310)
T d1vcfa1 81 PEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQE------A---VQ-R---------- 140 (310)
T ss_dssp TTTHHHHCCTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHH------H---HT-T----------
T ss_pred hhhhcccchHHhcCCcceeeeecccchhhhhHHHHHHHHHhcCCCeeccccccchh------h---hc-c----------
Confidence 2 122234 56788888765555444445444 44699999999876421 1 00 0
Q ss_pred CCCCch--HHHHHHHHHhcCCcEEEEEe---cCHHHHHHHHHcCCCEEEEecCCCCCC------------------CCch
Q 018919 187 LDLGKM--DEDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQL------------------DYVP 243 (349)
Q Consensus 187 ~~~~~~--~~~i~~i~~~~~~pv~vK~v---~~~~~a~~a~~~G~d~I~v~~~gg~~~------------------~~~~ 243 (349)
.+..+ |.++.+.+..++.|+++|++ .++++++.+.++|+|+|+++||||++. +.+.
T Consensus 141 -~~~~~~~~~~~~~~~~~~~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~ 219 (310)
T d1vcfa1 141 -GDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGI 219 (310)
T ss_dssp -SCCCCTTHHHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSC
T ss_pred -cccccccHHHHHHHHhhccCCceeeeecCcccHHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcch
Confidence 01122 55666666678999999998 689999999999999999999999642 2356
Q ss_pred hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCC
Q 018919 244 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 323 (349)
Q Consensus 244 ~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~ 323 (349)
++.+.+.++.+.. .++|||+||||+++.|++|||++|||+|++||||+|+++ .|.+||+++++.+++||+.+|.++|+
T Consensus 220 ~~~~al~~~~~~~-~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l~~~~-~G~~gv~~~l~~l~~El~~~m~~~G~ 297 (310)
T d1vcfa1 220 PTARAILEVREVL-PHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPAL-EGAERVAAWIGDYLEELRTALFAIGA 297 (310)
T ss_dssp BHHHHHHHHHHHC-SSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhc-CCCeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHHHHhc-cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7788888887764 579999999999999999999999999999999999765 58999999999999999999999999
Q ss_pred CChhhhcccc
Q 018919 324 RSLKEITRDH 333 (349)
Q Consensus 324 ~~i~~l~~~~ 333 (349)
++++||++..
T Consensus 298 ~~i~el~g~~ 307 (310)
T d1vcfa1 298 RNPKEARGRV 307 (310)
T ss_dssp SSGGGGTTCE
T ss_pred CCHHHHhhhh
Confidence 9999998653
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=99.96 E-value=5.3e-28 Score=232.53 Aligned_cols=256 Identities=18% Similarity=0.240 Sum_probs=190.7
Q ss_pred hhccccccccccc-CCCCCCCcceeE-cCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l-~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||||.|+|..- ...+++|++++| .+.++..||+.|||..++ +..||.+.++.|..+++.- .+++|+..
T Consensus 8 LtfDDVlLvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~MDtVt------~~~mAi~ma~~GGlgVihr--~~~ie~q~ 79 (388)
T d1eepa_ 8 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIHK--NMSIEAQR 79 (388)
T ss_dssp CCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTC------SHHHHHHHHHHTSEEEECS--SSCHHHHH
T ss_pred CCcccEEEeCCCCCCCHHHceeeEEeeCCEecCCCEEecCCCCCC------CHHHHHHHHHCCCEEEEeC--CCCHHHHH
Confidence 3699999999754 345789999999 578999999999997654 6799999999999999963 34565532
Q ss_pred h----hCC---Cc-------------eE------------E------EEeec---------------CChhHHHHHHHHH
Q 018919 119 S----TGP---GI-------------RF------------F------QLYVY---------------KDRNVVAQLVRRA 145 (349)
Q Consensus 119 ~----~~~---~~-------------~~------------~------Ql~~~---------------~~~~~~~~~~~~~ 145 (349)
+ .+. .. .+ + ++|+. .-++...+.++.+
T Consensus 80 ~~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~L 159 (388)
T d1eepa_ 80 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEEL 159 (388)
T ss_dssp HHHHHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHH
T ss_pred HHHHHhhhccccccccccCccccccchhhhhhhhhhhhHHHHhHHHHhhhhHHHhhhhccchhhhccCCCHHHHHHHHHH
Confidence 2 100 00 00 0 00000 0012345667777
Q ss_pred HHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHH
Q 018919 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQ 223 (349)
Q Consensus 146 ~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~ 223 (349)
.++|+|.++|+. .+ .+... .+.++++++.+ ++||++.++.+++.++.+++
T Consensus 160 ~~aG~D~ivID~--Ah--------------------------G~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~ 211 (388)
T d1eepa_ 160 VKAHVDILVIDS--AH--------------------------GHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS 211 (388)
T ss_dssp HHTTCSEEEECC--SC--------------------------CSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT
T ss_pred Hhhccceeeeec--cc--------------------------cchHHHHHHHHHHHHHCCCCceeeccccCHHHHHHHHh
Confidence 888999888643 21 12233 67899999887 79999999999999999999
Q ss_pred cCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH----
Q 018919 224 AGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV---- 292 (349)
Q Consensus 224 ~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l---- 292 (349)
+|||+|.|.-.+|.. ...|.|++.++.++.+..++ .+|||+||||+++.|++|||++|||+||+|++|-
T Consensus 212 ~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~E 291 (388)
T d1eepa_ 212 VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKE 291 (388)
T ss_dssp TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTT
T ss_pred cCCCeeeeccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeeeEEeccceeecchhhhcccC
Confidence 999999997655532 34578899999999887754 7999999999999999999999999999999883
Q ss_pred ----------------HHHhhc----------------------CHH----------HHHHHHHHHHHHHHHHHHHcCCC
Q 018919 293 ----------------YSLAAE----------------------GEK----------GVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 293 ----------------~~~~~~----------------------G~~----------gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
++++.. .++ .+++.+..+...|+..|.++|+.
T Consensus 292 spg~~~~~~g~~~k~~~gm~S~~a~~~g~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~~~~l~gglrs~m~y~Ga~ 371 (388)
T d1eepa_ 292 SPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAA 371 (388)
T ss_dssp SSSCEEEETTEEEEC------------------------------------CEECCBCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCceEEEeCCcEeecccccccHHHHhccccccccccccccccccccCceEEEeCCCCCHHHHHHHHHHHHHHHhhccCcc
Confidence 222110 012 26788999999999999999999
Q ss_pred Chhhhccc
Q 018919 325 SLKEITRD 332 (349)
Q Consensus 325 ~i~~l~~~ 332 (349)
+|+||++.
T Consensus 372 ~l~e~~~~ 379 (388)
T d1eepa_ 372 TISDLKIN 379 (388)
T ss_dssp SHHHHHHS
T ss_pred cHHHHhhC
Confidence 99999854
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=3.4e-26 Score=215.31 Aligned_cols=254 Identities=21% Similarity=0.297 Sum_probs=189.5
Q ss_pred hhcccccccccccC-CCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l~-~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+|||+.|+|.... ...++|++|++. ...++.||+.|||...+ +..||.+.+++|..++++.. .++++..
T Consensus 5 LtfdDVllvP~~s~~~sr~vdl~t~lt~~l~~~iPIIaa~MdtV~------~~~mA~als~~GGlGvi~r~--~~~e~~~ 76 (330)
T d1vrda1 5 LTFDDVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTVT------EAALAKALAREGGIGIIHKN--LTPDEQA 76 (330)
T ss_dssp CCGGGEEECCCCCCCCGGGSCCCEESSSSCEESSSEEECCCTTTC------SHHHHHHHHTTTCEEEECSS--SCHHHHH
T ss_pred cccccEEEeCCCCCcccccceEEEEEecCcccCCCEEeCCCCCcC------CHHHHHHHHHCCCeEEeecc--cchhhhH
Confidence 36999999998653 334789999996 57889999999997654 66899999999999999654 3454432
Q ss_pred h----hCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch
Q 018919 119 S----TGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (349)
Q Consensus 119 ~----~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (349)
+ ... .....-+ ..+++ ..+.++.+.++|++.++|++... ++..
T Consensus 77 ~~i~~vk~~~~~v~~~v--gv~~~-~~e~~~~li~agvd~ivId~A~G----------------------------~~~~ 125 (330)
T d1vrda1 77 RQVSIVKKTRLLVGAAV--GTSPE-TMERVEKLVKAGVDVIVIDTAHG----------------------------HSRR 125 (330)
T ss_dssp HHHHHHHTCCBCCEEEE--CSSTT-HHHHHHHHHHTTCSEEEECCSCC----------------------------SSHH
T ss_pred HHHHHHhhhccEEEEEE--ecCHH-HHHHHHHHHHCCCCEEEEecCCC----------------------------Cchh
Confidence 2 111 1122222 12333 34677888899999988754321 2233
Q ss_pred -HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhcC-CCcEE
Q 018919 193 -DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 263 (349)
Q Consensus 193 -~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~~-~ipvi 263 (349)
.+.++++|+.. ++||+++.+.+++.++.+.++|||+|.|...+|.. ...+.|++..+.++.+..+. ++|||
T Consensus 126 ~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vpvI 205 (330)
T d1vrda1 126 VIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPII 205 (330)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEeeccccCccccccceeccccccchhHHHHHHHHHhcCceEE
Confidence 56789998876 79999999999999999999999999996544421 12356677777777665432 79999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhc-------------------------------C--------HH---
Q 018919 264 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-------------------------------G--------EK--- 301 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~-------------------------------G--------~~--- 301 (349)
++|||+++.|++|||++|||+||+|+.|.-...+. + ++
T Consensus 206 AdGGi~~~gdiakAla~GAd~Vm~Gs~fa~~~E~pg~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~eG~~ 285 (330)
T d1vrda1 206 ADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKFVPEGIE 285 (330)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC-------------------------CB
T ss_pred ecCCcccCCchheeeeccCceeeecchheeecccCccEEEECCceeeeccccccccccccCchhhccccccccccCCCcE
Confidence 99999999999999999999999999995311110 0 12
Q ss_pred -------HHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 302 -------GVRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 302 -------gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
.+.+.++.+...|+..|.++|+++|+||++.-
T Consensus 286 ~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~~ 324 (330)
T d1vrda1 286 GMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKA 324 (330)
T ss_dssp CCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHhhcCcchHHHHhcCC
Confidence 27888999999999999999999999998753
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.95 E-value=2.5e-26 Score=218.38 Aligned_cols=255 Identities=18% Similarity=0.224 Sum_probs=191.0
Q ss_pred hhccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||+|.|+|... ...+++|++++|. ...+..||+.|||...+ +..||.+..++|..+++.-+ .++++..
T Consensus 12 l~fdDVllvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MDtV~------~~~mA~~ls~~Gglgvlhr~--~~~~e~~ 83 (365)
T d1zfja1 12 YTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVT------GSKMAIAIARAGGLGVIHKN--MSITEQA 83 (365)
T ss_dssp CCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHTTCEEEECCS--SCHHHHH
T ss_pred CCcceEEEeCCCCCcCHhHceeeEEeeCCcccCCCEEECCCCCcC------CHHHHHHHHHCCCceEEcCc--cCHHHHH
Confidence 3799999999754 3457899999995 68999999999997644 66899999999999999744 3455543
Q ss_pred hh----C--CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch
Q 018919 119 ST----G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (349)
Q Consensus 119 ~~----~--~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (349)
+. . .....+..-...+++ ..+.++.+.++|++.|+|++-.. +...
T Consensus 84 ~~~~~~~~~~~~~~v~aavGv~~~-~~er~~~l~~agvd~ivID~A~G----------------------------~s~~ 134 (365)
T d1zfja1 84 EEVRKVKRSEGRLLVAAAVGVTSD-TFERAEALFEAGADAIVIDTAHG----------------------------HSAG 134 (365)
T ss_dssp HHHHHHHHHTSCBCCEEEECSSTT-HHHHHHHHHHHTCSEEEECCSCT----------------------------TCHH
T ss_pred HHhhhhhhccCceEEEEEeccCch-HHHHHHHHHHcCCCEEEEECCcc----------------------------cccc
Confidence 21 1 111222222222332 34667777889999988654211 2222
Q ss_pred -HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhc-CCCcEE
Q 018919 193 -DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GRIPVF 263 (349)
Q Consensus 193 -~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~-~~ipvi 263 (349)
.+.++++|+.. ++||++..+.+++.++.+.++|||+|.|...+|.. ...|.|++.++.+++++.. .++|||
T Consensus 135 ~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iI 214 (365)
T d1zfja1 135 VLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTII 214 (365)
T ss_dssp HHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEE
T ss_pred hhHHHHHHHhhCCCcceeecccccHHHHHHHHhcCCceEEeeecccccccCcceeeeeccchhHHHHHHHHHHhCCceEE
Confidence 56789998887 78999999999999999999999999997655532 3346788888888876553 269999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchHHHH--------------------HHhh-------------------------c
Q 018919 264 LDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-------------------------E 298 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~GA~~V~ig~~~l~--------------------~~~~-------------------------~ 298 (349)
+||||+++.|++|||++|||+||+|++|.- +++. .
T Consensus 215 ADGGi~~~GDi~KAla~GAd~VMlG~~lAg~~EsPG~~~~~~g~~~k~~~Gm~s~~a~~~~~~~r~~~~~~~~~~~~~~e 294 (365)
T d1zfja1 215 ADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANKLVPE 294 (365)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CCCCCS
T ss_pred ecCCcCcchhhhhhhhccCCEEEecchhccccCCCCcEEEECCeEeeecCCcccHhhhhccccccccccccccccccccc
Confidence 999999999999999999999999998831 1100 0
Q ss_pred CH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 299 GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 299 G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
|. -.+.+.+..|...|+..|.++|+++|+||++.
T Consensus 295 G~~~~v~~~G~~~~~~~~l~gglrs~m~y~G~~~l~e~~~~ 335 (365)
T d1zfja1 295 GIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHEN 335 (365)
T ss_dssp BCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred CceEEeccCCCHHHHHHHHHHHHHHHHhhcCCCcHHHHhhC
Confidence 00 02678899999999999999999999999864
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.94 E-value=1.5e-26 Score=221.18 Aligned_cols=255 Identities=18% Similarity=0.239 Sum_probs=189.8
Q ss_pred hhccccccccccc-CCCCCCCcceeE-cCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l-~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||||.|+|..- .+.+++|++++| ....+..||+.|||...+ +..||.+.+++|..++++.+ .++|+..
T Consensus 14 LtfdDVllvP~~st~~sr~V~l~t~lt~~~~l~iPIIsApMdtVt------~~~mA~als~~GGLGvLhr~--~~~e~~~ 85 (378)
T d1jr1a1 14 LTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVT------EAGMAIAMALTGGIGFIHHN--CTPEFQA 85 (378)
T ss_dssp CCGGGEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTTTC------SHHHHHHHHHHTCEEEECCS--SCHHHHH
T ss_pred CCcccEEEeCCCCCCcHHHceeeeEEECCccCCCCEEECCCCCcC------CHHHHHHHHHCCCeeEEcCC--CCHHHHH
Confidence 3699999999754 344689999999 567899999999997654 56899999999999999753 4565543
Q ss_pred h----hC---CCceEE-----EEee---cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc
Q 018919 119 S----TG---PGIRFF-----QLYV---YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (349)
Q Consensus 119 ~----~~---~~~~~~-----Ql~~---~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (349)
+ .. ..+... ++.. -.-.+...+.++.+.++|++.+++++..+
T Consensus 86 ~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~~~~~~~l~~agv~vi~id~a~g----------------------- 142 (378)
T d1jr1a1 86 NEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDSSQG----------------------- 142 (378)
T ss_dssp HHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHHHHHHHHHHHHTCCEEEECCSSC-----------------------
T ss_pred HHHheehhhhhCcccccccccCEEEEEEeccCHHHHHHHHHHHhhccceEeeeccCc-----------------------
Confidence 2 11 111100 1110 01122334556677889999988765432
Q ss_pred cCCCCCCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCC------CCchhhHHHHHHHHHH
Q 018919 184 FQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPATIMALEEVVKA 255 (349)
Q Consensus 184 ~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~------~~~~~~~~~l~~i~~~ 255 (349)
+... .+.++++++.. ++||++..+.+++.|+.+.++|||+|.|...+|... ..|.|++.++.++.++
T Consensus 143 -----~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~ 217 (378)
T d1jr1a1 143 -----NSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEY 217 (378)
T ss_dssp -----CSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHH
T ss_pred -----cchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeeccccccccccccccccCcccchhhhHHHHh
Confidence 1222 56788898877 799999999999999999999999999976544321 2366788888888776
Q ss_pred hcC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh-----------------
Q 018919 256 TQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA----------------- 297 (349)
Q Consensus 256 ~~~-~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~----------------- 297 (349)
.+. ++|||+||||+++.|++|||++|||+||+|++|. |++++
T Consensus 218 a~~~~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt~EspG~~~~~~g~~~k~~~gm~S~~a~~~~~~~~~~~~~~ 297 (378)
T d1jr1a1 218 ARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSE 297 (378)
T ss_dssp HGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSTTTC-------------
T ss_pred hcccCCceecccccccCCceeeEEEeecceeeecceeeeeecccCccceecCceeeeccccchhhhhhcccchhhhhccc
Confidence 543 7999999999999999999999999999999884 22211
Q ss_pred -------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 018919 298 -------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 331 (349)
Q Consensus 298 -------~G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~ 331 (349)
.|. -.+++++..|...|+..|.++|+++|+||++
T Consensus 298 ~~~~~~~eG~~~~v~~~G~v~~~~~~l~gglrs~m~y~G~~~l~e~~~ 345 (378)
T d1jr1a1 298 ADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRA 345 (378)
T ss_dssp ---CCCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred cccccCCCccEEeeccCCCHHHHHHHHHHHHHHhhhccCcCcHHHHHh
Confidence 010 1378899999999999999999999999975
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=99.94 E-value=2.3e-26 Score=219.14 Aligned_cols=253 Identities=19% Similarity=0.235 Sum_probs=190.7
Q ss_pred hhccccccccccc--CC-CCCCCcceeEc--------CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCC
Q 018919 41 NAFSRILFRPRIL--ID-VSKIDMNTTVL--------GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW 109 (349)
Q Consensus 41 ~~~~~~~l~p~~l--~~-~~~~d~s~~l~--------g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~ 109 (349)
.+|||+.|+|... .. .+++|+++++. ++.+..||+.|||...+ +..||.+.++.|...++.
T Consensus 9 ltFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDTVt------~~~mA~~la~~Gglgvih-- 80 (362)
T d1pvna1 9 HTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVS------GEKMAIALAREGGISFIF-- 80 (362)
T ss_dssp CCGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTTTC------SHHHHHHHHHTTCEEEEC--
T ss_pred CCccceEEeCCCCcCCCCccceeeeeEEEeeccccccccccCCcEEecCCCCcC------CHHHHHHHHHCCCEEEEe--
Confidence 4799999999864 33 78999999984 56788999999997654 679999999999999995
Q ss_pred CCCCHHHHHhh----CC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc
Q 018919 110 STSSVEEVAST----GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (349)
Q Consensus 110 ~~~~~e~i~~~----~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (349)
..+++|+..+. .. ........ ......+.++.+.++|++.+++++..-
T Consensus 81 R~~~ie~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~ag~d~i~IDvAhG------------------------ 133 (362)
T d1pvna1 81 GSQSIESQAAMVHAVKNFRYLVGAGI---NTRDFRERVPALVEAGADVLCIDSSDG------------------------ 133 (362)
T ss_dssp CSSCHHHHHHHHHHHHTCCCCCEEEE---CSSSHHHHHHHHHHHTCSEEEECCSCC------------------------
T ss_pred ecCCHHHHHHHhhhhhhccccccccc---chhhhHHHHHHHhhcCceEEeechhcc------------------------
Confidence 34567765432 11 11111111 112234566777889999988655321
Q ss_pred CCCCCCch-HHHHHHHHHhc--CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHH
Q 018919 185 QGLDLGKM-DEDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKA 255 (349)
Q Consensus 185 ~~~~~~~~-~~~i~~i~~~~--~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~ 255 (349)
.... .+.++++++.. ++||+++.+.|+|.++.+.++|+|+|.|.-.+|.. ...|.|++.++.+++++
T Consensus 134 ----~~~~v~~~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~ 209 (362)
T d1pvna1 134 ----FSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAE 209 (362)
T ss_dssp ----CBHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHH
T ss_pred ----chhHHHHHHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEecccccccccchhhhccCCchHHHHHHHHHH
Confidence 1122 46688887665 58999999999999999999999999997665542 33467889998888765
Q ss_pred hc-------CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh-----------
Q 018919 256 TQ-------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA----------- 297 (349)
Q Consensus 256 ~~-------~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~----------- 297 (349)
.+ ..+|||+||||+++.|++|||++|||+||+|+.|- |++++
T Consensus 210 ~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~ 289 (362)
T d1pvna1 210 RNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDL 289 (362)
T ss_dssp HHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSTTTCCGGGGCS
T ss_pred HHHhhhhcccCCceeeccccCcccceeEEEEEeccceeehhhhhcccccCCcceeeccceeeeeeccccccccccccccc
Confidence 32 25999999999999999999999999999999884 23321
Q ss_pred ---------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 298 ---------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 298 ---------~G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
+|. -.+++.+..|...|+..|.++|+++|+||++.
T Consensus 290 ~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~ 340 (362)
T d1pvna1 290 GGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSK 340 (362)
T ss_dssp SSCSSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred cccccccCCCCcEEEeccCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence 011 14789999999999999999999999999853
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.93 E-value=3.4e-25 Score=211.16 Aligned_cols=251 Identities=20% Similarity=0.272 Sum_probs=187.5
Q ss_pred hhccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||||.|+|... ....++|++++|. +.++..||+.|||...+ +..||.+.++.|...++.-+ +++|+..
T Consensus 13 ltfdDVlLvP~~sti~srdVdls~~~~~~~~l~iPIiss~MDtV~------~~~mA~~la~~Gglgvlhr~--~~~e~~~ 84 (368)
T d2cu0a1 13 YTFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTVT------EWEMAVAMAREGGLGVIHRN--MGIEEQV 84 (368)
T ss_dssp CCGGGEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHTTCEEEECSS--SCHHHHH
T ss_pred CCcccEEEeCCCCcCchhhceeeEEeeCCcccCCCEEeCCCCCcC------CHHHHHHHHHCCCeeEeccc--CCHHHHH
Confidence 3799999999754 3445899999997 58999999999997654 67899999999999999643 4565532
Q ss_pred h----h-----CC-------CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc
Q 018919 119 S----T-----GP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (349)
Q Consensus 119 ~----~-----~~-------~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~ 182 (349)
+ . .+ ....+-... .++. .+.++.+.++|++.|+|++...
T Consensus 85 ~~v~~v~~~e~~~~~~~d~~~~~~v~~~~--~~~~-~~r~~~l~~aGvd~ivID~A~G---------------------- 139 (368)
T d2cu0a1 85 EQVKRVKRAEKYKNAVRDENGELLVAAAV--SPFD-IKRAIELDKAGVDVIVVDTAHA---------------------- 139 (368)
T ss_dssp HHHHHHHTCCCCTTCCBCTTSCBCCEEEE--CTTC-HHHHHHHHHTTCSEEEEECSCC----------------------
T ss_pred HHHHhhhhhhhccccccccCccEEEEecc--ChHH-HHHHHHHHHcCCCEEEecCccc----------------------
Confidence 2 1 01 111111111 2222 3456677789999998765321
Q ss_pred ccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHH
Q 018919 183 NFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKA 255 (349)
Q Consensus 183 ~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~ 255 (349)
+... .+.++++++.+++|+++..+.+++.++.+ .|+|+|.|.-++|.. ...|.|++.++.++.++
T Consensus 140 ------h~~~~i~~lK~ir~~~~~~vIaGNVaT~e~~~~l--~gaD~VkVGIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~ 211 (368)
T d2cu0a1 140 ------HNLKAIKSMKEMRQKVDADFIVGNIANPKAVDDL--TFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADR 211 (368)
T ss_dssp ------CCHHHHHHHHHHHHTCCSEEEEEEECCHHHHTTC--TTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHH
T ss_pred ------chhhhhhhhhhhhhhcccceeeccccCHHHHHhh--hcCcceeecccCcccccchhhcccccchHHHHHHHHHH
Confidence 1222 57799999999999999999999988654 699999997666642 33578889998888876
Q ss_pred hcC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH--------------------HHhh-----------------
Q 018919 256 TQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA----------------- 297 (349)
Q Consensus 256 ~~~-~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~--------------------~~~~----------------- 297 (349)
.+. ++|||+||||+++.|++|||++|||+||+|++|-- +++.
T Consensus 212 ~~~~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~ 291 (368)
T d2cu0a1 212 AQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGY 291 (368)
T ss_dssp HHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------C
T ss_pred HhccCCeeEecCCCCcCChhheeeeeccceeeccchhccccccCCceEeeCCeEcccccCcccccccccCCccccccccc
Confidence 532 69999999999999999999999999999998731 1110
Q ss_pred --------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 298 --------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 298 --------~G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
.|. -.+++++..|...|+..|.++|+++|+||++.
T Consensus 292 ~~~~~~~~EG~~~~v~~~G~~~~~l~~l~gglrs~m~y~G~~~l~e~~~~ 341 (368)
T d2cu0a1 292 MKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEK 341 (368)
T ss_dssp CCCSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred ccccccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHhhC
Confidence 010 13688999999999999999999999999743
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.91 E-value=5.5e-23 Score=192.38 Aligned_cols=235 Identities=20% Similarity=0.270 Sum_probs=166.9
Q ss_pred cceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCC----------------------------
Q 018919 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST---------------------------- 111 (349)
Q Consensus 61 ~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~---------------------------- 111 (349)
+||+|+|++|++||++|+.... .+..+.+.+.++|+.+++. +.+.
T Consensus 1 Lsv~~~Gl~l~nPi~~Asg~~~------~~~~~~~~~~~~G~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~ 74 (312)
T d1gtea2 1 ISVEMAGLKFINPFGLASAAPT------TSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSS 74 (312)
T ss_dssp CCEEETTEEESSSEEECSSGGG------SSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSC
T ss_pred CcEEECCEEcCCCcEECCcCCC------CCHHHHHHHHHcCCcEEEEeeecCCccccCCCCCcEEeccCCcccccccccc
Confidence 6899999999999999984332 2557888888999887653 2110
Q ss_pred ---------CCH----HHH---HhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcC
Q 018919 112 ---------SSV----EEV---ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174 (349)
Q Consensus 112 ---------~~~----e~i---~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~ 174 (349)
... +++ ....+ ......+....+.+...+.++.+++.|++++++|++||... ..++..
T Consensus 75 ~~n~~g~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~-~~~~~~---- 149 (312)
T d1gtea2 75 FLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGM-GERGMG---- 149 (312)
T ss_dssp EEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCC-C---------
T ss_pred ccccccccccchhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcc-cccccc----
Confidence 001 112 11223 33334444445677777888889999999999999999631 111100
Q ss_pred CCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC----HHHHHHHHHcCCCEEEEecCC-CCC----------
Q 018919 175 LPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHG-ARQ---------- 238 (349)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~----~~~a~~a~~~G~d~I~v~~~g-g~~---------- 238 (349)
... ..+++. .+.++++|+.+++||++|.... .+.++.+.++|+|+|++.|+- ++.
T Consensus 150 ------~~~---~~~~~~~~~i~~~v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~ 220 (312)
T d1gtea2 150 ------LAC---GQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWP 220 (312)
T ss_dssp ------SBG---GGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSS
T ss_pred ------hhh---hhhHHHHHHHHHHHhhccCCceeecccccchhHHHHHHHHHHhcccceEEEeeccccccccccccccc
Confidence 000 124555 5668999999999999997632 355788889999999998751 110
Q ss_pred --------CC---Cc----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHH
Q 018919 239 --------LD---YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 303 (349)
Q Consensus 239 --------~~---~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv 303 (349)
.. +| +.+++.+.++++.++ ++|||++|||++++|++++|++|||+|||||++++ +|.
T Consensus 221 ~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~-~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~----~G~--- 292 (312)
T d1gtea2 221 AVGAGKRTTYGGVSGTAIRPIALRAVTTIARALP-GFPILATGGIDSAESGLQFLHSGASVLQVCSAVQN----QDF--- 292 (312)
T ss_dssp CBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHST-TCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT----SCT---
T ss_pred ccccccccccccccCcCcchhhHHHHHHHHHHcC-CCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhc----cCh---
Confidence 00 12 235678888887763 59999999999999999999999999999999986 476
Q ss_pred HHHHHHHHHHHHHHHHHcCCC
Q 018919 304 RRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 304 ~~~l~~l~~el~~~m~~~G~~ 324 (349)
.+++.+.++|+++|...|++
T Consensus 293 -~~i~~i~~~L~~~m~~~g~~ 312 (312)
T d1gtea2 293 -TVIQDYCTGLKALLYLKSIE 312 (312)
T ss_dssp -THHHHHHHHHHHHHHHTTCG
T ss_pred -HHHHHHHHHHHHHHHHcCCC
Confidence 47889999999999999863
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.89 E-value=5.5e-22 Score=185.23 Aligned_cols=239 Identities=18% Similarity=0.161 Sum_probs=168.0
Q ss_pred cceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCC--------------------------CC
Q 018919 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------SS 113 (349)
Q Consensus 61 ~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~--------------------------~~ 113 (349)
++|+|+|+++.+||++|+.... .+....+.+..+|+.+++. |.+. ..
T Consensus 2 Ls~~~~Gl~l~nPi~~aag~~~------~~~~~~~~~~~~G~G~vv~ktit~~~~~gn~~pr~~~~~~~~~n~~G~~n~g 75 (311)
T d1juba_ 2 LNTTFANAKFANPFMNASGVHC------MTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG 75 (311)
T ss_dssp CCEEETTEEESSSEEECTTSSC------SSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred eeEEECCEecCCCCEECCCCCC------CCHHHHHHHHHCCCcEEEEEEEeeccccCCCCCeEEEccccchhhhhhcCch
Confidence 6899999999999999973211 2456778888888876542 2111 01
Q ss_pred H----HHHH----hhCC-CceEEEEeecCChhHHHHHHHHHHHcC-CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc
Q 018919 114 V----EEVA----STGP-GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (349)
Q Consensus 114 ~----e~i~----~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G-~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (349)
+ +++. +..+ .+.+..+.. .+.+...+.++.++.++ ++++++|+.||.... .+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~pvi~si~~-~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~----------------~~~ 138 (311)
T d1juba_ 76 FDYYLDYVLKNQKENAQEGPIFFSIAG-MSAAENIAMLKKIQESDFSGITELNLSCPNVPG----------------EPQ 138 (311)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCEEEECC-SSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSS----------------CCC
T ss_pred hHHHHHHHHHhhhhcccCCCceeeccc-cccchhHHHHHHHhhccccceeeeccccccccc----------------ccc
Confidence 1 1221 1122 456666654 45555566777777775 899999999985310 000
Q ss_pred cCCCCCCch-HHHHHHHHHhcCCcEEEEEecC--H----HHHHHHHHcCCCEEEEecCCCCC-----------C-----C
Q 018919 184 FQGLDLGKM-DEDVKWLQTITKLPILVKGVLT--A----EDARIAVQAGAAGIIVSNHGARQ-----------L-----D 240 (349)
Q Consensus 184 ~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~--~----~~a~~a~~~G~d~I~v~~~gg~~-----------~-----~ 240 (349)
. ..+++. .+.++++++..+.|+++|.... . ..++.+.+.|++++...|..... . .
T Consensus 139 ~--~~~~~~~~~~~~~v~~~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (311)
T d1juba_ 139 L--AYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGF 216 (311)
T ss_dssp G--GGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGE
T ss_pred c--cccHHHHHHHHHHhhcccccceeecccccchhhHHHHHHHHHHhhccceEecccccccccccccccccccccccccc
Confidence 0 123334 4569999999999999999753 2 22566777889999876542110 0 0
Q ss_pred C---c----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHH
Q 018919 241 Y---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 241 ~---~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~e 313 (349)
+ | +.++..+.++++.++.++|||++|||++++|+++++.+|||+||++|++++ .|+ .+++.+.+|
T Consensus 217 gG~sg~~l~~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~----~Gp----~~i~~i~~~ 288 (311)
T d1juba_ 217 GGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK----EGP----AIFDRIIKE 288 (311)
T ss_dssp EEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH----HCT----HHHHHHHHH
T ss_pred CCccccccCchHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHh----cCh----HHHHHHHHH
Confidence 1 2 224566667766666689999999999999999999999999999999987 366 378899999
Q ss_pred HHHHHHHcCCCChhhhccc
Q 018919 314 FELAMALSGCRSLKEITRD 332 (349)
Q Consensus 314 l~~~m~~~G~~~i~~l~~~ 332 (349)
|+.+|...|+++++|+++.
T Consensus 289 L~~~m~~~G~~si~e~~G~ 307 (311)
T d1juba_ 289 LEEIMNQKGYQSIADFHGK 307 (311)
T ss_dssp HHHHHHHHTCCSGGGTTTC
T ss_pred HHHHHHHcCCCCHHHhcCc
Confidence 9999999999999999875
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.87 E-value=1.3e-21 Score=182.49 Aligned_cols=241 Identities=18% Similarity=0.199 Sum_probs=166.6
Q ss_pred CCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCC--------------------------
Q 018919 57 SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSW-------------------------- 109 (349)
Q Consensus 57 ~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~-------------------------- 109 (349)
+++.++|+|+|++|++||++|+- ..+. ...+.+.+...|..+++ .+.
T Consensus 3 ~~~~L~~~~~Gl~l~nPi~~aAG-~~~~-----~~~~~~~~~~~g~G~v~~~ti~~~~~~gn~~pr~~~~~~~~~n~~g~ 76 (311)
T d1ep3a_ 3 ENNRLSVKLPGLDLKNPIIPASG-CFGF-----GEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGL 76 (311)
T ss_dssp CCTTTCEEETTEEESSSEEECTT-SSTT-----STTGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCC
T ss_pred CCCcceEEECCEEcCCCcEECCC-CCCC-----CHHHHHhhhhcCccEEEEeeEcccccCCCCCCeEeeecccccccccc
Confidence 57889999999999999999962 1110 11233444444443332 111
Q ss_pred CCCCHHHH--------HhhCC-CceEEEEeecCChhHHHHHHHHHH-HcCCCEEEEecCCCCCCchhHHhhhhcCCCCcC
Q 018919 110 STSSVEEV--------ASTGP-GIRFFQLYVYKDRNVVAQLVRRAE-RAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179 (349)
Q Consensus 110 ~~~~~e~i--------~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~-~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~ 179 (349)
.+..++.+ .+..+ .+.+.|+.. .+++...+.++.+. .+|+++|++|+.||......
T Consensus 77 ~~~g~~~~~~~~~~~~~~~~~~~pii~si~~-~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~~~------------- 142 (311)
T d1ep3a_ 77 QNPGLEVIMTEKLPWLNENFPELPIIANVAG-SEEADYVAVCAKIGDAANVKAIELNISCPNVKHGG------------- 142 (311)
T ss_dssp CBCCHHHHHHTHHHHHHHHCTTSCEEEEECC-SSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTT-------------
T ss_pred cchhHHHHhhhhhhhhhcccCCCcccccccc-hhhhHHHHHHHHHhhcccccccccccCCCcccccc-------------
Confidence 01123322 12233 578889875 45666666666664 46999999999999531000
Q ss_pred cccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec----CHHHHHHHHHcCCCEEEEecCCCCC-------------CC-
Q 018919 180 TLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL----TAEDARIAVQAGAAGIIVSNHGARQ-------------LD- 240 (349)
Q Consensus 180 ~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~----~~~~a~~a~~~G~d~I~v~~~gg~~-------------~~- 240 (349)
... ..+++. .+.++++++..++|+++|... ..+.++.+.++|+|++++.|..+.. ..
T Consensus 143 --~~~--~~~~~~~~~~~~~v~~~~~~p~~vkl~~~~~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 218 (311)
T d1ep3a_ 143 --QAF--GTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITG 218 (311)
T ss_dssp --EEG--GGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCE
T ss_pred --ccc--ccCHHHHHHHHHHHHhccCCCeeeeecccccchHHHHHHHHHhhhheeEEEeeccccccccccccccccccCC
Confidence 000 124444 455778888889999999863 4577888999999999998753210 00
Q ss_pred --Cc----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 241 --YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 241 --~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
.| +.+++.+.++++.+ ++|||++|||+|++|+.+++.+|||+||+||+++. ++ .++..+.+||
T Consensus 219 g~sG~~i~~~~l~~i~~i~~~~--~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~-----~P----~i~~~I~~~L 287 (311)
T d1ep3a_ 219 GLSGPAIKPVALKLIHQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA-----DP----FVCPKIIDKL 287 (311)
T ss_dssp EEESGGGHHHHHHHHHHHHTTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH-----CT----THHHHHHHHH
T ss_pred CCCCCcccchhHHHHHHHhhhc--ceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHc-----CC----hHHHHHHHHH
Confidence 12 23567777777665 79999999999999999999999999999999874 23 2578899999
Q ss_pred HHHHHHcCCCChhhhccc
Q 018919 315 ELAMALSGCRSLKEITRD 332 (349)
Q Consensus 315 ~~~m~~~G~~~i~~l~~~ 332 (349)
..+|...|+++++|+.++
T Consensus 288 ~~~m~~~g~~si~e~~g~ 305 (311)
T d1ep3a_ 288 PELMDQYRIESLESLIQE 305 (311)
T ss_dssp HHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHH
Confidence 999999999999999864
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.87 E-value=6.7e-21 Score=184.26 Aligned_cols=121 Identities=22% Similarity=0.275 Sum_probs=99.9
Q ss_pred CCcEEEEEecC------HHHHHHHHHcCCCEEEEecCC-CCC-------CCCc-------hhhHHHHHHHHHHhcCCCcE
Q 018919 204 KLPILVKGVLT------AEDARIAVQAGAAGIIVSNHG-ARQ-------LDYV-------PATIMALEEVVKATQGRIPV 262 (349)
Q Consensus 204 ~~pv~vK~v~~------~~~a~~a~~~G~d~I~v~~~g-g~~-------~~~~-------~~~~~~l~~i~~~~~~~ipv 262 (349)
..||++|+.++ .+.++.+.+.|+|+|+++|.. ++. ..+| +.++..+.++++.+++++||
T Consensus 266 ~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipI 345 (409)
T d1tv5a1 266 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPI 345 (409)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCE
T ss_pred CCceEEEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceE
Confidence 34899999753 255788899999999999852 211 1222 23567888888888778999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 263 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 263 ia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
|+.|||.|++|+++.+.+||++|||||.+++ .|+ .+++.+.+||..+|+..|+++++|+++.
T Consensus 346 IGvGGI~s~~Da~e~i~AGAs~VQv~T~li~----~Gp----~~v~~I~~~L~~~l~~~g~~~i~e~iG~ 407 (409)
T d1tv5a1 346 IASGGIFSGLDALEKIEAGASVCQLYSCLVF----NGM----KSAVQIKRELNHLLYQRGYYNLKEAIGR 407 (409)
T ss_dssp EEESSCCSHHHHHHHHHTTEEEEEESHHHHH----HGG----GHHHHHHHHHHHHHHHHTCSSSGGGTTT
T ss_pred EEECCCCCHHHHHHHHHcCCCHHhhhhHHHh----cCh----HHHHHHHHHHHHHHHHcCCCCHHHhcCC
Confidence 9999999999999999999999999999987 366 3688999999999999999999999875
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=6.4e-22 Score=184.37 Aligned_cols=237 Identities=22% Similarity=0.240 Sum_probs=170.9
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC------C--HHHHHhh-CCCceEEEEeecCChhHHHHHHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------S--VEEVAST-GPGIRFFQLYVYKDRNVVAQLVR 143 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~------~--~e~i~~~-~~~~~~~Ql~~~~~~~~~~~~~~ 143 (349)
.|.+|||.+.+ +.+++..+.+.|...++++|.+. . ..++... ...|..+||++ +|++...+.++
T Consensus 2 ki~LAPM~g~t------d~~fR~l~~~~g~~~~~Temi~~~~~~~~~~~~~~~~~~~~e~p~~~Ql~g-~~p~~~~~aa~ 74 (305)
T d1vhna_ 2 KVGLAPMAGYT------DSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIFG-SEPNELSEAAR 74 (305)
T ss_dssp EEEECCCTTTC------SHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHSCCTTCTTEEEEEEC-SCHHHHHHHHH
T ss_pred eEEEECcCCCc------cHHHHHHHHHHCcCEEEECCEEechhhhCChhhHhhccCCCCCCeEEEEec-cchhhhhhhhh
Confidence 47899998865 78999999999999888888431 1 1112111 12678999987 68888887776
Q ss_pred HHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec------CHH
Q 018919 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL------TAE 216 (349)
Q Consensus 144 ~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~------~~~ 216 (349)
.+ +.|++.|.||++||.. +. .+.++ +... +.+|+. .+.++.+++.+++||.+|... ..+
T Consensus 75 ~~-~~~~~~IdlN~GCP~~--~v--~~~g~------Ga~L---l~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~ 140 (305)
T d1vhna_ 75 IL-SEKYKWIDLNAGCPVR--KV--VKEGA------GGAL---LKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEE 140 (305)
T ss_dssp HH-TTTCSEEEEEECCCCH--HH--HHTTC------GGGG---GSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHH
T ss_pred hh-hhheeeeeEEEEecch--hh--ccccc------ceee---ccCHHHHHHHhhhhhhhcccccccccccCcccchhhH
Confidence 54 4599999999999963 11 01111 1111 457777 788999999999999999973 246
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCCEEEEch-----H
Q 018919 217 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGR-----P 290 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~~V~ig~-----~ 290 (349)
.++.+.++|++.|+|++.-..|.+.+++.|+.++++ +.++|||++|||.+.+|+.++++ .|+|+||||| |
T Consensus 141 ~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~----~~~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP 216 (305)
T d1vhna_ 141 IYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVL----EKRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRP 216 (305)
T ss_dssp HHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGS----CCSSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCT
T ss_pred HHHHHHHhCCcEEEechhhhhhccccchhhhHHHhh----hhhhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhh
Confidence 789999999999999544334666788888877654 34799999999999999999998 6999999999 6
Q ss_pred HHHHHhh----cCH---HHHHHHHHHHHHHHHHHHHHcCCC-Chhhhcccce
Q 018919 291 VVYSLAA----EGE---KGVRRVLEMLREEFELAMALSGCR-SLKEITRDHI 334 (349)
Q Consensus 291 ~l~~~~~----~G~---~gv~~~l~~l~~el~~~m~~~G~~-~i~~l~~~~l 334 (349)
|++.... .+. ....+.++.+.+.++......|.. .+..++++..
T Consensus 217 ~if~~i~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~~~l~~~rkhl~ 268 (305)
T d1vhna_ 217 WIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLA 268 (305)
T ss_dssp THHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHH
T ss_pred hHhhhhhhhhcCCCcccchhHHHHHhHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 6775421 111 123456677777777777776643 4556655543
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=3.7e-20 Score=176.73 Aligned_cols=254 Identities=19% Similarity=0.180 Sum_probs=166.1
Q ss_pred cccccccccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCCC-----------
Q 018919 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS----------- 112 (349)
Q Consensus 45 ~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~~----------- 112 (349)
++.+.|.. +..+..+++|+|+|+++++||++|+ |.. ++....+.+.++|+.+++. |.+..
T Consensus 35 ~~~~~~~~-~~~~~~~L~v~~~Gl~~~nPi~lAs-G~~------~~~~~i~~~~~~G~G~vv~kTit~~~~~gn~~pr~~ 106 (367)
T d1d3ga_ 35 SLGLLPRA-RFQDSDMLEVRVLGHKFRNPVGIAA-GFD------KHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVF 106 (367)
T ss_dssp HTTCCC----CCCCGGGCEEETTEEESSSEEECT-TSS------TTSSSHHHHHHHTCSEEEEEEECSSCBCCSCSCCEE
T ss_pred HhcCcccc-ccCCCCCCceEECCEecCCCcEeCc-CCC------CCHHHHHHHhhcCCcEEeeccccccccccCCchhhh
Confidence 45666654 3445668999999999999999987 322 1224566777778776652 22210
Q ss_pred -----------------CHHHHHhh-------------CCCceEEEEeecCC---hhHHHHHHHHHHHcCCCEEEEecCC
Q 018919 113 -----------------SVEEVAST-------------GPGIRFFQLYVYKD---RNVVAQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 113 -----------------~~e~i~~~-------------~~~~~~~Ql~~~~~---~~~~~~~~~~~~~~G~~~i~i~~d~ 159 (349)
..+.+.+. ..-+..+.+....+ .........+..+.+++++++|+.|
T Consensus 107 ~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~pv~vsi~~~~~~~~~~~~~~~~~~~~~~~ad~lelNiSc 186 (367)
T d1d3ga_ 107 RLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSS 186 (367)
T ss_dssp EEGGGTEEEECCCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEESCC
T ss_pred hhccccccccccCcCCcchHHHHHHHHHHhhhcccccccCceEEEEeccccccHHHHHHHHHHHHHhhhccccccccccc
Confidence 11111110 01244555544322 1122334445566799999999999
Q ss_pred CCCCchhHHhhhhcCCCCcCcccccCCCCCCch-H-------HHHHHHHHhcCCcEEEEEecC--H----HHHHHHHHcC
Q 018919 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-D-------EDVKWLQTITKLPILVKGVLT--A----EDARIAVQAG 225 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~-------~~i~~i~~~~~~pv~vK~v~~--~----~~a~~a~~~G 225 (349)
|.... . .. ..+... . +...+++...++|+++|..++ . +.++.+.++|
T Consensus 187 Pn~~~-~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~~~i~~~a~~~~~~g 247 (367)
T d1d3ga_ 187 PNTAG-L---------------RS---LQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELG 247 (367)
T ss_dssp TTSTT-C----------------------CHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHT
T ss_pred ccccc-c---------------cc---ccccchhhhHHHHHHHhhhhcccccCCccccccCcccchhhhhhhHHHHHhhh
Confidence 85310 0 00 001111 1 112222333478999999853 2 3478889999
Q ss_pred CCEEEEecCCC-CC---------CCC---c----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 226 AAGIIVSNHGA-RQ---------LDY---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 226 ~d~I~v~~~gg-~~---------~~~---~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+|+|++.|.-. +. ..+ | +.....+..+++..+.++|||+.|||.+++|+++.|.+||++||||
T Consensus 248 ~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aGAs~VQi~ 327 (367)
T d1d3ga_ 248 IDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLY 327 (367)
T ss_dssp CCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred hheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHHHHHHcCCCHHHhh
Confidence 99999987521 10 011 2 2356778888777766899999999999999999999999999999
Q ss_pred hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 289 RPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 289 ~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
|++++ .|+ .++..+.+||+.+|+..|+++++|+++..
T Consensus 328 Ta~~~----~Gp----~ii~~I~~~L~~~l~~~G~~si~dl~G~a 364 (367)
T d1d3ga_ 328 TALTF----WGP----PVVGKVKRELEALLKEQGFGGVTDAIGAD 364 (367)
T ss_dssp HHHHH----HCT----HHHHHHHHHHHHHHHHTTCSSHHHHTTGG
T ss_pred HHHHh----cCc----HHHHHHHHHHHHHHHHcCCCCHHHhcChh
Confidence 99876 376 47889999999999999999999998753
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=99.84 E-value=2.3e-19 Score=181.40 Aligned_cols=258 Identities=21% Similarity=0.179 Sum_probs=185.7
Q ss_pred cCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhC----CCceEEEEeecCChhHHHHHHHHH
Q 018919 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG----PGIRFFQLYVYKDRNVVAQLVRRA 145 (349)
Q Consensus 70 ~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~----~~~~~~Ql~~~~~~~~~~~~~~~~ 145 (349)
+-.||.++.|+++++ .+++..++++++...|+....++.+. +.+...... .+..++|+.. .....+.+.+
T Consensus 427 I~k~f~isaMSfGAL-S~~A~~aLa~ga~~~g~~~ntGEGG~-~~~~~~~~~~~~~~~~~i~q~as-grfG~~~~~l--- 500 (771)
T d1ea0a2 427 IRKRFITPGMSMGAL-SPEAHGTLNVAMNRIGAKSDSGEGGE-DPARFRPDKNGDNWNSAIKQVAS-GRFGVTAEYL--- 500 (771)
T ss_dssp HHTTEEEEECCBTTB-CHHHHHHHHHHHHHTTCEEECCTTCC-CGGGSSBCTTSCBCCCSEEEECS-SCTTCCHHHH---
T ss_pred hheeecccccccccc-CHHHHHHHHHHHHhcCCeeecCCCCC-ChhhccccCCCcccccccceecC-CcCCcCHHHh---
Confidence 447999999999987 46678899999999999988877653 333332111 1346788743 3334443333
Q ss_pred HHcCCCEEEEecCC---CCCC-----chh-HHhhhhcCCCCcCccc---ccCCCCCCch-HHHHHHHHHhc-CCcEEEEE
Q 018919 146 ERAGFKAIALTVDT---PRLG-----RRE-ADIKNRFTLPPFLTLK---NFQGLDLGKM-DEDVKWLQTIT-KLPILVKG 211 (349)
Q Consensus 146 ~~~G~~~i~i~~d~---p~~g-----~r~-~d~~~~~~~p~~~~~~---~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~ 211 (349)
..+++|+|.+.. |..| .+. .++..-..+|++++.. ....+.+++. .+.|.++|+.. +.||.+|.
T Consensus 501 --~~~~~ieIK~~QGAKpG~GG~Lpg~KVt~~IA~~R~~~~G~~~iSP~~h~di~siedL~~~I~~Lr~~~~~~pv~vKl 578 (771)
T d1ea0a2 501 --NQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKL 578 (771)
T ss_dssp --TSCSEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred --cccceeEEeeecccccccccccccccCCHHHHHhcCCCCCCCccCCCCCCCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 468899998874 2222 111 2222222345554432 2222334433 45688889877 89999999
Q ss_pred ecC--H-HHHHHHHHcCCCEEEEecC-CCCC-------CCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHH
Q 018919 212 VLT--A-EDARIAVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 212 v~~--~-~~a~~a~~~G~d~I~v~~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~ 275 (349)
+.. . ..+..+.++|+|+|+|+++ ||+. .+.|.|....|.++.+++ ++++.++++||++++.|++
T Consensus 579 ~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ 658 (771)
T d1ea0a2 579 VSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIV 658 (771)
T ss_dssp ECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHH
T ss_pred CCcCcHHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHH
Confidence 853 2 5566778999999999987 4542 125677778888888876 4579999999999999999
Q ss_pred HHHHhCCCEEEEchHHHHHHhhc---------------------------CHHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 018919 276 KALALGASGIFIGRPVVYSLAAE---------------------------GEKGVRRVLEMLREEFELAMALSGCRSLKE 328 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l~~~~~~---------------------------G~~gv~~~l~~l~~el~~~m~~~G~~~i~~ 328 (349)
|++++|||+|.+||++|++++|. ..+.|.+++..+.+|++..|+.+|.++++|
T Consensus 659 ka~aLGAD~v~~gt~~m~alGCi~~r~Ch~~~CP~GIaTqd~~lr~~~~~~~~~v~n~~~~~~~e~~~~~~~~G~~s~~~ 738 (771)
T d1ea0a2 659 IAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNE 738 (771)
T ss_dssp HHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCSGG
T ss_pred HHHHhCCCchHHhHHHHHHhhCHHhhhccCCCCCCeeecCCHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 99999999999999999999752 246789999999999999999999999999
Q ss_pred h-ccccee
Q 018919 329 I-TRDHIV 335 (349)
Q Consensus 329 l-~~~~l~ 335 (349)
+ .++++.
T Consensus 739 lvG~~dll 746 (771)
T d1ea0a2 739 VIGRTDLL 746 (771)
T ss_dssp GTTCGGGE
T ss_pred hccchhhh
Confidence 8 455543
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.82 E-value=3.2e-19 Score=166.52 Aligned_cols=240 Identities=17% Similarity=0.146 Sum_probs=158.8
Q ss_pred CcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCC--------------------------C
Q 018919 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------S 112 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~--------------------------~ 112 (349)
+++|+|+|++|++||++|+=.. +.+....+.+.+.|..+++. |.+. .
T Consensus 1 sL~v~~~Gl~l~nPi~~aaG~~------~~~~~~~~~~~~~g~g~vv~ktit~~p~~gnp~Pr~~~~~~~~~N~~G~~n~ 74 (312)
T d2b4ga1 1 SLKVNILGHEFSNPFMNAAGVL------CTTEEDLRRMTESESGSLIGKSCTLAPRTGNPEPRYFGLPLGSINSMGLPNL 74 (312)
T ss_dssp CCCEEETTEEESSSEEECTTSS------CSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBS
T ss_pred CCcEEECCEECCCCcEeCcCCC------CCCHHHHHHHHHcCCCEEEeCcccccCCCCCCCCeEEecCchheeccccCcc
Confidence 4789999999999999986111 12446777888888877653 2110 1
Q ss_pred CHHH----HHhhCC---CceEEEEeecCChhHHHHHHHH---HHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc
Q 018919 113 SVEE----VASTGP---GIRFFQLYVYKDRNVVAQLVRR---AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (349)
Q Consensus 113 ~~e~----i~~~~~---~~~~~Ql~~~~~~~~~~~~~~~---~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~ 182 (349)
.++. +.+... .+.++.+... +.+...+.++. ..+.+++++++|+.||... . .+
T Consensus 75 G~~~~~~~l~~~~~~~~~pii~si~g~-~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~-------------~---~~ 137 (312)
T d2b4ga1 75 GVDFYLSYAAQTHDYSRKPLFLSMSGL-SVEESVEMVKKLVPITKEKGTILELNLSCPNVP-------------G---KP 137 (312)
T ss_dssp CHHHHHHHHHHTCCTTTCCEEEEECCS-SHHHHHHHHHHHHHHHHHHCCEEEEECCCCCST-------------T---CC
T ss_pred hHHHHHHHHHHhhhccccceecccccc-ccccHHHHHHHHHHhhhhcccceeeccccCCcC-------------c---ch
Confidence 2332 222221 4566666543 33333444433 3456899999999999631 0 00
Q ss_pred ccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC--HHH----HHHHHHc-CCCEEEEecCCCC---------C--C----
Q 018919 183 NFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT--AED----ARIAVQA-GAAGIIVSNHGAR---------Q--L---- 239 (349)
Q Consensus 183 ~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~--~~~----a~~a~~~-G~d~I~v~~~gg~---------~--~---- 239 (349)
.. ..+++. .+.++++++.+++|+++|.... ... +..+.++ +++++...|.-+. + .
T Consensus 138 ~~--~~~~~~~~~i~~~v~~~~~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~ 215 (312)
T d2b4ga1 138 QV--GYDFDTTRTYLQKVSEAYGLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQ 215 (312)
T ss_dssp CG--GGCHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGG
T ss_pred hh--hccHHHHHHHHHHhhccccccceeccccccchhHHHHHHHHHHhhhhhhhhhhcccccccccccccCCCccccccc
Confidence 00 123344 5668999998999999999753 221 2223333 3444444332110 0 0
Q ss_pred -C---Cchh----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHH
Q 018919 240 -D---YVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 311 (349)
Q Consensus 240 -~---~~~~----~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~ 311 (349)
. +|++ ++..+.++++.++ +.+|++.|||++++|++++|.+||++||++|++++ +|+ .+++.+.
T Consensus 216 ~~GGlSG~~l~~~al~~v~~~~~~~~-~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~----~Gp----~~i~~i~ 286 (312)
T d2b4ga1 216 GFGGLGGKYVLPTALANVNAFFRRCP-DKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHD----EGP----IIFARLN 286 (312)
T ss_dssp GEEEEEEGGGHHHHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHH----HCT----THHHHHH
T ss_pred cccCcccccccchhhHHHHHHHHHcC-CCceeecCCcCCHHHHHHHHHcCCChheeehhhHh----cCc----HHHHHHH
Confidence 0 2232 4677777777664 56899999999999999999999999999999987 366 4788999
Q ss_pred HHHHHHHHHcCCCChhhhcccc
Q 018919 312 EEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 312 ~el~~~m~~~G~~~i~~l~~~~ 333 (349)
+||+.+|+..|+++++|+++..
T Consensus 287 ~~L~~~l~~~G~~si~e~~G~~ 308 (312)
T d2b4ga1 287 KELQEIMTNKGYKTLDEFRGRV 308 (312)
T ss_dssp HHHHHHHHHHTCCSGGGTTTCC
T ss_pred HHHHHHHHHcCCCCHHHHcCee
Confidence 9999999999999999999853
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=99.79 E-value=8.1e-18 Score=170.55 Aligned_cols=257 Identities=19% Similarity=0.149 Sum_probs=178.7
Q ss_pred cCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhh-------------------CC---CceEE
Q 018919 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST-------------------GP---GIRFF 127 (349)
Q Consensus 70 ~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~-------------------~~---~~~~~ 127 (349)
+-.||.++.|+++++ .++...++++++.+.|+....++.+. +.+..... .. ...+.
T Consensus 436 I~k~f~~~aMS~Gsl-S~~a~~ala~aa~~~G~~~ntGEGG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~i~ 513 (809)
T d1ofda2 436 IVKRFCTGGMSLGAL-SREAHETLAIAMNRLGAKSNSGEGGE-DVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIK 513 (809)
T ss_dssp HHTTEECCCBCTTTS-CHHHHHHHHHHHHHHTCBCEECTTCC-CGGGGSCCCCCCTTSCCTTSTTCCSCCTTCCCCCSEE
T ss_pred hhhhhcccccccccc-cHHHHHHHHHHHHHhCceecCCCCCC-CceeeeccCccccccCcccccccccccCCCCCcchhH
Confidence 457999999999887 46678899999999999988887763 22221100 00 12345
Q ss_pred EEeecCChhHHHHHHHHHHHcCCCEEEEecCC---CCCC-----chh-HHhhhhcCCCCcCcc---cccCCCCCCch-HH
Q 018919 128 QLYVYKDRNVVAQLVRRAERAGFKAIALTVDT---PRLG-----RRE-ADIKNRFTLPPFLTL---KNFQGLDLGKM-DE 194 (349)
Q Consensus 128 Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~---p~~g-----~r~-~d~~~~~~~p~~~~~---~~~~~~~~~~~-~~ 194 (349)
|+- ......+.+.+.. ++.|+|.+.. |..| .+. .++..-..+|++++. +...++.+++. ..
T Consensus 514 q~a-sgrfGv~~~~l~~-----~~~ieIK~~QGAKPG~GG~Lpg~KVt~~IA~~R~~~~G~~liSP~~h~diysiedL~q 587 (809)
T d1ofda2 514 QIA-SGRFGVTPEYLMS-----GKQLEIKMAQGAKPGEGGQLPGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQ 587 (809)
T ss_dssp EEC-TTCTTCCHHHHHH-----CSEEEEECCCTTSTTSCCEECGGGCCHHHHHHHTSCTTCCEECCSSCTTCSSHHHHHH
T ss_pred hhh-hcccCCChhhhcc-----cceEEEEEecccccccccccchhhcCHHHHhhcCCCCCCCCCCCCCCCCCCCHHHHHH
Confidence 653 2334444444433 5788888864 2222 111 112222234544433 22222334443 45
Q ss_pred HHHHHHHhc-CCcEEEEEecC--H-HHHHHHHHcCCCEEEEecC-CCCC-------CCCchhhHHHHHHHHHHh-----c
Q 018919 195 DVKWLQTIT-KLPILVKGVLT--A-EDARIAVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----Q 257 (349)
Q Consensus 195 ~i~~i~~~~-~~pv~vK~v~~--~-~~a~~a~~~G~d~I~v~~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~ 257 (349)
.|.++|+.. +.||.+|.+.. . ..+....++|+|+|+|+++ ||+. .+.|.|....|.++.+++ +
T Consensus 588 ~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~gl~~a~~~L~~~glR 667 (809)
T d1ofda2 588 LIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLR 667 (809)
T ss_dssp HHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCccHHHHHHHHHHHHHHcCCC
Confidence 688888876 67999999843 2 4456667899999999987 5542 124667777888887775 3
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhc---------------------------CHHHHHHHHHHH
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE---------------------------GEKGVRRVLEML 310 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~---------------------------G~~gv~~~l~~l 310 (349)
+++.++++||++|+.|++||+++|||+|.+||++|++++|. .++.|.+++..+
T Consensus 668 ~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~alGCi~~r~Ch~n~CP~GIaTqd~~l~~~~~~~~~~v~n~~~~~ 747 (809)
T d1ofda2 668 DRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFI 747 (809)
T ss_dssp GGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTTSSSCCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHHHHHHCHHhHhhCCCCCCCcccCCCHHHHhhCcCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998652 235699999999
Q ss_pred HHHHHHHHHHcCCCChhhhc-ccce
Q 018919 311 REEFELAMALSGCRSLKEIT-RDHI 334 (349)
Q Consensus 311 ~~el~~~m~~~G~~~i~~l~-~~~l 334 (349)
.+|++..|+.+|.++++|+. +.++
T Consensus 748 ~~e~~~~~a~~G~~s~~elvGr~dl 772 (809)
T d1ofda2 748 AEEVRSLLAHLGYRSLDDIIGRTDL 772 (809)
T ss_dssp HHHHHHHHHHHTCSCGGGTTTCGGG
T ss_pred HHHHHHHHHHHcCCCHHHhcChHhh
Confidence 99999999999999999983 4444
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=5.1e-16 Score=145.96 Aligned_cols=233 Identities=17% Similarity=0.158 Sum_probs=139.7
Q ss_pred CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCCC---------------------
Q 018919 55 DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS--------------------- 112 (349)
Q Consensus 55 ~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~~--------------------- 112 (349)
.....+++++++|+++.+||++|+ |.. . +....+.+.+.|..+++. +.+..
T Consensus 39 ~~~~~~L~v~~~Gl~~~NPiglAs-G~~----~--~~e~i~~~~~~G~G~vv~ktit~~p~~gnp~pr~~~~~~~~~~iN 111 (336)
T d1f76a_ 39 RQKVPAKPVNCMGLTFKNPLGLAA-GLD----K--DGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLIN 111 (336)
T ss_dssp CCCCCCCCEEETTEEESSSEEECT-TSS----T--TCCCHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEE
T ss_pred cCCCCCCCeEECCeecCCCCEeCc-ccC----C--ChHHHHHHHhhcccccccccccccccCCCCCcccccccccccchh
Confidence 335578999999999999999986 321 2 223557788888887752 22110
Q ss_pred -------CHHHH----HhhCC-CceEEEEeecCCh--h-HHHHHHHH--HHHcCCCEEEEecCCCCC-CchhHHhhhhcC
Q 018919 113 -------SVEEV----ASTGP-GIRFFQLYVYKDR--N-VVAQLVRR--AERAGFKAIALTVDTPRL-GRREADIKNRFT 174 (349)
Q Consensus 113 -------~~e~i----~~~~~-~~~~~Ql~~~~~~--~-~~~~~~~~--~~~~G~~~i~i~~d~p~~-g~r~~d~~~~~~ 174 (349)
..+.. ..... .+..+.+..+.+. + ...+.... ..+.+++++++|++||.. |.+. ..+..
T Consensus 112 ~~gl~n~g~~~~~~~~~~~~~~~~l~v~I~~~~~~~~~~a~~d~~~~~~~~~~~ad~iElNiScPN~~g~~~--~~~~~- 188 (336)
T d1f76a_ 112 RMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTPGLRT--LQYGE- 188 (336)
T ss_dssp CCCCCBCCHHHHHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSSTTGGG--GGSHH-
T ss_pred hccCccccHHHHHHHhhcccccceEEEEEeccCCcchHHHHHHHHHHHHHhhcccceeeecccchhhhcccc--cccch-
Confidence 11111 11111 3344555332221 1 12233332 235789999999999963 1110 00000
Q ss_pred CCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH------HHHHHHHHcCCCEEEEecCC-CCC--------
Q 018919 175 LPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA------EDARIAVQAGAAGIIVSNHG-ARQ-------- 238 (349)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~------~~a~~a~~~G~d~I~v~~~g-g~~-------- 238 (349)
.... ..+... .....+.+...++||++|...+. +.+..+.+.|+++++..|.- ++.
T Consensus 189 -----~l~~---~~~~~~~~~~~~~~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~ 260 (336)
T d1f76a_ 189 -----ALDD---LLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNC 260 (336)
T ss_dssp -----HHHH---HHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTT
T ss_pred -----hhcc---chhhhhhhhhhhhhhccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhccccccccccc
Confidence 0000 000000 01112333345899999997532 34677888999999998742 111
Q ss_pred -CCC---ch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHH
Q 018919 239 -LDY---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 310 (349)
Q Consensus 239 -~~~---~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l 310 (349)
..+ |+ .++..+.++++.++.++|||+.|||.|++|+.+.|.+||++|||||++++ .|+. +++.+
T Consensus 261 ~~~GGlSG~~i~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~----~Gp~----ii~~I 332 (336)
T d1f76a_ 261 DQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF----KGPP----LIKEI 332 (336)
T ss_dssp TCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH----HCHH----HHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHh----cChH----HHHHH
Confidence 112 22 35677788888777789999999999999999999999999999999886 3774 44555
Q ss_pred HHH
Q 018919 311 REE 313 (349)
Q Consensus 311 ~~e 313 (349)
.+|
T Consensus 333 ~~e 335 (336)
T d1f76a_ 333 VTH 335 (336)
T ss_dssp HHH
T ss_pred Hhh
Confidence 554
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.59 E-value=3.5e-14 Score=124.63 Aligned_cols=187 Identities=17% Similarity=0.112 Sum_probs=127.1
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCce-EE--EEeec--CChhHHHHHHHHHHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIR-FF--QLYVY--KDRNVVAQLVRRAER 147 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~-~~--Ql~~~--~~~~~~~~~~~~~~~ 147 (349)
|++-+||. +++...++|+++.+.|...+.- .+...+.++++....+. .. ..+.. .......+..+...+
T Consensus 13 ~~~~~Pm~-----~~~~~a~~A~aa~~~Ga~~i~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (222)
T d1y0ea_ 13 ALPDEPLH-----SSFIMSKMALAAYEGGAVGIRA-NTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIE 86 (222)
T ss_dssp CCTTSTTC-----CHHHHHHHHHHHHHHTCSEEEE-ESHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHH
T ss_pred cCCCCCCC-----CcHHHHHHHHHHHHCCCeEEec-CCHHHHHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhHHH
Confidence 44556664 3444568899999999775432 22223445554433221 11 11110 011122345566677
Q ss_pred cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCC
Q 018919 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAA 227 (349)
Q Consensus 148 ~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d 227 (349)
+|++.+.+....+.. .....++.++++++....+++...+.+.++++++.+.|+|
T Consensus 87 agad~v~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d 141 (222)
T d1y0ea_ 87 SQCEVIALDATLQQR-------------------------PKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFD 141 (222)
T ss_dssp HTCSEEEEECSCSCC-------------------------SSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCS
T ss_pred cCCCEEEeecccccc-------------------------ccchHHHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCC
Confidence 899998765533210 0122267788888888888888899999999999999999
Q ss_pred EEEEecCCCCCCC----CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 228 GIIVSNHGARQLD----YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 228 ~I~v~~~gg~~~~----~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+|.+.+++++... .....++.+.++++.+ ++||+++|||+|++|+.+++++|||+|++||++.
T Consensus 142 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~ 208 (222)
T d1y0ea_ 142 YIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAIT 208 (222)
T ss_dssp EEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred eEEEeccCCcccccCccchhhHHHHHHHHHhcC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhhc
Confidence 9998877654322 2344578888888776 8999999999999999999999999999999885
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.57 E-value=3.3e-14 Score=125.67 Aligned_cols=179 Identities=17% Similarity=0.132 Sum_probs=119.4
Q ss_pred CChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceE--EEEeecC---ChhHHHHHHHHHHHcCCCEEEEecCCC
Q 018919 86 HPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF--FQLYVYK---DRNVVAQLVRRAERAGFKAIALTVDTP 160 (349)
Q Consensus 86 ~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~--~Ql~~~~---~~~~~~~~~~~~~~~G~~~i~i~~d~p 160 (349)
+++.-.++|+++.+.|...+.- .+...+.++++....+.. .+.+... ..............+|++.+.+.....
T Consensus 31 ~~~~v~~~A~a~~~~Ga~~i~~-~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~~~~ 109 (230)
T d1yxya1 31 TGGIMPLMAKAAQEAGAVGIRA-NSVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKR 109 (230)
T ss_dssp TCCSHHHHHHHHHHHTCSEEEE-ESHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSS
T ss_pred ChHHHHHHHHHHHHCCCeEEEe-cChhhHHHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHhcCCCEEEEecccc
Confidence 3444558899999999886522 222223334433222211 1111110 111123456677788999988765321
Q ss_pred CCCchhHHhhhhcCCCCcCcccccCCCCCC-chHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLG-KMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL 239 (349)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~ 239 (349)
. ..+. .+++.+++++..+...++.+.+.+.++++.+.++|+|+|.+++++.++.
T Consensus 110 ~-------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~ 164 (230)
T d1yxya1 110 D-------------------------RHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPY 164 (230)
T ss_dssp C-------------------------CTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTT
T ss_pred c-------------------------ccchhhHHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeeccccccc
Confidence 0 0112 2378899999988888888999999999999999999999988876654
Q ss_pred CCchhh-HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 240 DYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 240 ~~~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+..... ...+.++.... ++||+++|||+|++|+.+++++|||+|+|||++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~--~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~ 216 (230)
T d1yxya1 165 SRQEAGPDVALIEALCKA--GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT 216 (230)
T ss_dssp SCCSSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH
T ss_pred ccccchHHHHHHHHHhcC--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChhhc
Confidence 433222 22344444444 7999999999999999999999999999999876
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=99.38 E-value=2.7e-11 Score=113.24 Aligned_cols=222 Identities=18% Similarity=0.176 Sum_probs=138.7
Q ss_pred ceeEcCeecCcceeecccccccc----cCC-hhhHHHHHHHHHcCCeEEecCCCC--------------CCHH------H
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKM----AHP-EGEYATARAASAAGTIMTLSSWST--------------SSVE------E 116 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l----~~~-~~~~~la~aa~~~G~~~~~~~~~~--------------~~~e------~ 116 (349)
..+|.++++++.|+.|||+...- ..| +.....-..-++.|+.+++++... .+.+ .
T Consensus 7 P~~ig~~~lkNRiv~aPm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIite~~~V~~~~~~~~~~~~~~~d~~i~~~k~ 86 (337)
T d1z41a1 7 PITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAK 86 (337)
T ss_dssp CEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHH
T ss_pred CceECCEEECCCEEeCccCCCccCCCCCCCCHHHHHHHHHHHcCCceEEEECcEEEccccccccCccccccHHHHHHHHH
Confidence 46788999999999999963221 112 122344444456677777654311 0111 1
Q ss_pred HHh---hCCCceEEEEeecC---------------------------Ch-------hHHHHHHHHHHHcCCCEEEEecCC
Q 018919 117 VAS---TGPGIRFFQLYVYK---------------------------DR-------NVVAQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 117 i~~---~~~~~~~~Ql~~~~---------------------------~~-------~~~~~~~~~~~~~G~~~i~i~~d~ 159 (349)
+.+ ......++||+-.. +. +...+.+++++++|+|+|+||...
T Consensus 87 l~~avh~~G~~i~~QL~h~Gr~~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVEiH~ah 166 (337)
T d1z41a1 87 LTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAH 166 (337)
T ss_dssp HHHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECT
T ss_pred HHHHhhccccccchhhhcCCCcccccCCCCCCcccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccC
Confidence 221 12355778884321 00 223456677888999999999753
Q ss_pred CCCCchhHHhhhhcCCCCcCcccc--cCC-CCCC-ch-HHHHHHHHHhcCCcEEEEEec--------CH----HHHHHHH
Q 018919 160 PRLGRREADIKNRFTLPPFLTLKN--FQG-LDLG-KM-DEDVKWLQTITKLPILVKGVL--------TA----EDARIAV 222 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~--~~~-~~~~-~~-~~~i~~i~~~~~~pv~vK~v~--------~~----~~a~~a~ 222 (349)
|+ +-+.|..|. ...+. ..| +.++ .| .+.++.+|+.++.|++++... +. +.++.+.
T Consensus 167 ---Gy----Ll~qFlSp~-~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~ 238 (337)
T d1z41a1 167 ---GY----LIHEFLSPL-SNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMK 238 (337)
T ss_dssp ---TS----HHHHHHCTT-TCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHH
T ss_pred ---cc----eeeeecCCc-cccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHH
Confidence 22 222332231 01110 111 1111 24 678999999999999998762 22 4577889
Q ss_pred HcCCCEEEEecCCCCCC--CCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 223 QAGAAGIIVSNHGARQL--DYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 223 ~~G~d~I~v~~~gg~~~--~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
++|+|.+.++....... ...+ ........+++.+ ++||++.|+|.+++++.++|+.| ||.|++||+++.
T Consensus 239 ~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia 311 (337)
T d1z41a1 239 EQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA--DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLR 311 (337)
T ss_dssp HTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH--CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred HcCCcccccccccccccccccCCcccHHHHHHHHHhc--CceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHh
Confidence 99999999975432111 1111 1345556677777 79999999999999999999998 999999999985
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.22 E-value=3.5e-10 Score=105.61 Aligned_cols=221 Identities=12% Similarity=0.090 Sum_probs=132.6
Q ss_pred ceeEcCeecCcceeecccccccccCChhh--HHHHHHHHHcCCeEEecCCCC---------------CCHH------HHH
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGE--YATARAASAAGTIMTLSSWST---------------SSVE------EVA 118 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~~~--~~la~aa~~~G~~~~~~~~~~---------------~~~e------~i~ 118 (349)
..+|+++++++.|+.|||+... .+..++ ...-..-++.|+.+++++... .+.+ ++.
T Consensus 12 P~~ig~~~l~NRiv~apm~~~~-~~~~~~~~~~~~~~rA~gG~gliite~~~v~~~~~~~~~~~~~~~~d~~i~~~~~l~ 90 (340)
T d1djqa1 12 PIQIGPKTLRNRFYQVPHAIGA-GSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMT 90 (340)
T ss_dssp CEEETTEEESSSEEECCCCCSC-TTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHH
T ss_pred CceECCEEECCCeEeCCCCCCC-CCCCCHHHHHHHHHHhccCeEEEEEEEEEeccccccCCCCCccccceeecchhhhhH
Confidence 4788899999999999997543 233222 334444456677766543211 0111 121
Q ss_pred h---hCCCceEEEEeecC-------------------------------Chh-------HHHHHHHHHHHcCCCEEEEec
Q 018919 119 S---TGPGIRFFQLYVYK-------------------------------DRN-------VVAQLVRRAERAGFKAIALTV 157 (349)
Q Consensus 119 ~---~~~~~~~~Ql~~~~-------------------------------~~~-------~~~~~~~~~~~~G~~~i~i~~ 157 (349)
+ ......+.||+-.. +.+ ...+.+++++++|+|+|+||.
T Consensus 91 ~~vh~~g~~i~~Ql~H~Gr~~~~~~~~~~~~~~s~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~ 170 (340)
T d1djqa1 91 DEVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYG 170 (340)
T ss_dssp HHHHHTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHhhcccceeeEeeeeccccccccccCCcccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHhccceeeeec
Confidence 1 12345677772100 011 123466778889999999998
Q ss_pred CCCCCCchhHHhhhhcCCCCcCcccc--cCC-CCCC-ch-HHHHHHHHHhc--CCcEEEEEec---------C----HHH
Q 018919 158 DTPRLGRREADIKNRFTLPPFLTLKN--FQG-LDLG-KM-DEDVKWLQTIT--KLPILVKGVL---------T----AED 217 (349)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~--~~~-~~~~-~~-~~~i~~i~~~~--~~pv~vK~v~---------~----~~~ 217 (349)
.. |. +-+.|..|. ..-+. ..| +.++ .| .+.++.+|+.+ +.||.+|... . ...
T Consensus 171 ah---Gy----Ll~qFls~~-~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~ 242 (340)
T d1djqa1 171 AH---SY----LPLQFLNPY-YNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQK 242 (340)
T ss_dssp CT---TC----HHHHHHCTT-TCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHH
T ss_pred cc---cc----hhhhhhhhc-cccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccccccCCCCchhhhHHH
Confidence 53 21 222332221 00010 111 1112 34 67899999998 4688888641 1 123
Q ss_pred HHHHHHcCCCEEEEecCCCCC---------CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEE
Q 018919 218 ARIAVQAGAAGIIVSNHGARQ---------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFI 287 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~---------~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~i 287 (349)
+..+.+.|+|.+.++...-.+ .......+.....+++.+ ++|||+.|||++++++.++|+.| ||.|++
T Consensus 243 ~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~ 320 (340)
T d1djqa1 243 FVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS--KKPVLGVGRYTDPEKMIEIVTKGYADIIGC 320 (340)
T ss_dssp HHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC--SSCEEECSCCCCHHHHHHHHHTTSCSBEEE
T ss_pred HHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHc--CCeEEEECCCCCHHHHHHHHHCCCccchhh
Confidence 566788999999987531110 001112344455555555 79999999999999999999998 999999
Q ss_pred chHHHH
Q 018919 288 GRPVVY 293 (349)
Q Consensus 288 g~~~l~ 293 (349)
||+++.
T Consensus 321 gR~~ia 326 (340)
T d1djqa1 321 ARPSIA 326 (340)
T ss_dssp SHHHHH
T ss_pred HHHHHH
Confidence 999984
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=4.1e-10 Score=104.69 Aligned_cols=222 Identities=14% Similarity=0.120 Sum_probs=130.1
Q ss_pred ceeEcCeecCcceeecccccccccCCh-hh--HHHHHHHHHcCCeEEecCCCC--------------CC---H---HHHH
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPE-GE--YATARAASAAGTIMTLSSWST--------------SS---V---EEVA 118 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~-~~--~~la~aa~~~G~~~~~~~~~~--------------~~---~---e~i~ 118 (349)
..+|.++++++.|+.|||....-.+.. .+ ..+-..-++.|+.+++++... .+ + ..+.
T Consensus 8 P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~~~yy~~rA~gG~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~k~l~ 87 (330)
T d1ps9a1 8 PLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTIT 87 (330)
T ss_dssp CEECSSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHH
T ss_pred CccCCCEEeCCCcEeCCCCCCcCCCCCCcHHHHHHHHHHHhCCeEEEEEeeeEEcCCccccCCCcccCCcccccccccce
Confidence 467788999999999999632211111 12 222333445677777643211 01 1 1122
Q ss_pred h---hCCCceEEEEeecC--------------------------Ch-------hHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 119 S---TGPGIRFFQLYVYK--------------------------DR-------NVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 119 ~---~~~~~~~~Ql~~~~--------------------------~~-------~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
+ ......++||+-.. +. +...+.+++++++|+|+|+||...
T Consensus 88 ~~vh~~g~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~aA~ra~~AGfDgVEIh~ah--- 164 (330)
T d1ps9a1 88 EAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSE--- 164 (330)
T ss_dssp HHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECB---
T ss_pred eeeecCCCeehhhhhhcCCccccCcccCCccccccccCCCChhcChhHHHHHHHHHHHHHHHHHHhCcCeeeeccch---
Confidence 1 12355788985210 11 123456678889999999999853
Q ss_pred CchhHHhhhhcCCCCcCcccc--cCC-CCCC-ch-HHHHHHHHHhcC--CcEEEEEe--------cCH----HHHHHHHH
Q 018919 163 GRREADIKNRFTLPPFLTLKN--FQG-LDLG-KM-DEDVKWLQTITK--LPILVKGV--------LTA----EDARIAVQ 223 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~--~~~-~~~~-~~-~~~i~~i~~~~~--~pv~vK~v--------~~~----~~a~~a~~ 223 (349)
|. +-++|..|. ...+. ..| +.++ .| .+.|+.+|+.++ .||.+|.. .+. +.++.+.+
T Consensus 165 Gy----Ll~qFlSp~-~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~ 239 (330)
T d1ps9a1 165 GY----LINEFLTLR-TNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEA 239 (330)
T ss_dssp TS----HHHHHHCTT-TCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHhh-cccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHHHHHHHH
Confidence 21 122332231 01111 111 1111 24 678999999984 67777764 133 44677888
Q ss_pred cCCCEEEEecCCCC--CCC-Cc--h-h-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 224 AGAAGIIVSNHGAR--QLD-YV--P-A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 224 ~G~d~I~v~~~gg~--~~~-~~--~-~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
+|+|.+.++..+.. ... .. + . ......++++.+ ++||++.|+|++++++.++|+.| ||.|++||+++.
T Consensus 240 ~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia 315 (330)
T d1ps9a1 240 AGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV--SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLA 315 (330)
T ss_dssp HTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSC--SSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred hhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhC--CceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHh
Confidence 99999998753221 111 11 1 1 122334444444 79999999999999999999998 999999999984
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=99.02 E-value=2.3e-08 Score=89.62 Aligned_cols=147 Identities=15% Similarity=0.098 Sum_probs=101.9
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCC---Cchh-----HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRL---GRRE-----ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT 203 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~---g~r~-----~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~ 203 (349)
.|.+.+.+.++.+.+.|+|.|++.+....+ |.-. +-+.++ .+.+. ++.++.+|+..
T Consensus 28 P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G---------------~~~~~~~~~~~~~r~~~ 92 (267)
T d1qopa_ 28 PGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAG---------------VTPAQCFEMLAIIREKH 92 (267)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTT---------------CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhccccc---------------chhhhhhhhhhhhcccc
Confidence 466778999999999999999988743211 1000 111111 12333 67788888885
Q ss_pred -CCcEEEEEecCH-------HHHHHHHHcCCCEEEEecC---------------CC---------CC-------------
Q 018919 204 -KLPILVKGVLTA-------EDARIAVQAGAAGIIVSNH---------------GA---------RQ------------- 238 (349)
Q Consensus 204 -~~pv~vK~v~~~-------~~a~~a~~~G~d~I~v~~~---------------gg---------~~------------- 238 (349)
+.|+++-+..++ +.++.|.++|+|++++--- |- +.
T Consensus 93 ~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~g 172 (267)
T d1qopa_ 93 PTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRG 172 (267)
T ss_dssp SSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCS
T ss_pred cccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccHHHHHHHHhhCch
Confidence 789988775432 5588999999999998511 10 00
Q ss_pred ------C--CCc------hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 239 ------L--DYV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 239 ------~--~~~------~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
. .+| ....+.+.++++.. ++||++..||++++|+.+++..|||+|.||++++..+.
T Consensus 173 FiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk~i~ 242 (267)
T d1qopa_ 173 YTYLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIE 242 (267)
T ss_dssp CEEEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred hhhhhcccccCCcccccchhHHHHHHHHhhhc--cCCceeecccCCHHHHHHHHhcCCCEEEECHHHHHHHH
Confidence 0 011 11235566666654 79999999999999999999999999999999998654
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.96 E-value=8.6e-09 Score=88.76 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=106.0
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcc---cc----------cCC-CCCC
Q 018919 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTL---KN----------FQG-LDLG 190 (349)
Q Consensus 126 ~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~---~~----------~~~-~~~~ 190 (349)
++.+....+.+...+.++.+.+.|++.+++|+++|..-.-.++++..+. |. -++. .+ +.. ..+|
T Consensus 11 iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~-~~~~vGaGTV~~~~~~~~a~~aGa~fivsP 89 (202)
T d1wa3a1 11 IVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKE-KGAIIGAGTVTSVEQCRKAVESGAEFIVSP 89 (202)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHH-TTCEEEEESCCSHHHHHHHHHHTCSEEECS
T ss_pred EEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcC-CCcEEEecccccHHHHHHHHhhcccEEeCC
Confidence 3444445678888889999999999999999998864333334332221 11 0000 00 000 3456
Q ss_pred ch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCC
Q 018919 191 KM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 269 (349)
Q Consensus 191 ~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 269 (349)
.+ .+.++..++ .++|++- ++.|+.++..|.++|+|.+.+.... ..|+ ..++.+...+ .++|++.+|||
T Consensus 90 ~~~~~v~~~~~~-~~i~~iP-Gv~TpsEi~~A~~~G~~~lK~fPa~----~~G~---~~lk~l~~p~-p~i~~iptGGI- 158 (202)
T d1wa3a1 90 HLDEEISQFCKE-KGVFYMP-GVMTPTELVKAMKLGHTILKLFPGE----VVGP---QFVKAMKGPF-PNVKFVPTGGV- 158 (202)
T ss_dssp SCCHHHHHHHHH-HTCEEEC-EECSHHHHHHHHHTTCCEEEETTHH----HHHH---HHHHHHHTTC-TTCEEEEBSSC-
T ss_pred CCcHHHHHHHHh-cCCceeC-CcCcHHHHHHHHHCCCCEEEecchh----hcCH---HHHHHHhCcc-cCCcEEeeCCC-
Confidence 66 555666654 5888775 7899999999999999999995321 0122 3454444444 37999999999
Q ss_pred CHHHHHHHHHhCCCEEEEchHHH
Q 018919 270 RGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 270 ~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+.+++.+++++||.+|.+|+.++
T Consensus 159 ~~~n~~~~l~aga~avg~Gs~l~ 181 (202)
T d1wa3a1 159 NLDNVCEWFKAGVLAVGVGSALV 181 (202)
T ss_dssp CTTTHHHHHHHTCSCEEECHHHH
T ss_pred CHHHHHHHHHCCCeEEEEchhhc
Confidence 78999999999999999999776
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.95 E-value=1.2e-08 Score=90.35 Aligned_cols=149 Identities=20% Similarity=0.205 Sum_probs=101.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCC---Cch-----hHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcC
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRL---GRR-----EADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITK 204 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~---g~r-----~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~ 204 (349)
|.+.+.+.++.+. .|++.|++.+....+ |.- .+-+.++ .+.+. ++.++++|+..+
T Consensus 17 ~~~~s~~~l~~l~-~g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G---------------~~~~~~~~~~~~~r~~~~ 80 (248)
T d1geqa_ 17 DKQSTLNFLLALD-EYAGAIELGIPFSDPIADGKTIQESHYRALKNG---------------FKLREAFWIVKEFRRHSS 80 (248)
T ss_dssp CHHHHHHHHHHHG-GGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTT---------------CCHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHH-cCCCEEEECCCCCCccccCHHHHHhhhHHHhCC---------------ccHHHHHHHHHHHhhcCC
Confidence 5567888888775 599999987743211 100 0111111 12333 788999999889
Q ss_pred CcEEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCC---------C----------------
Q 018919 205 LPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------R---------------- 237 (349)
Q Consensus 205 ~pv~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg---------~---------------- 237 (349)
+|+++-+..++ +.++.|.++|+|++++-. +|- +
T Consensus 81 ~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gFi 160 (248)
T d1geqa_ 81 TPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFV 160 (248)
T ss_dssp CCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEE
T ss_pred CcEEEEeccccccccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEecccchhHHHHHHHhcCCCeE
Confidence 99988776443 558889999999999841 110 0
Q ss_pred ------CCCCc-----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCH
Q 018919 238 ------QLDYV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 300 (349)
Q Consensus 238 ------~~~~~-----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~ 300 (349)
...+. ....+.+.++++.. ++||++..||++++|+.+++..|||+|.|||+++..+...+.
T Consensus 161 Y~vs~~GvTG~~~~~~~~~~~~v~~vk~~t--~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~~i~~~~~ 232 (248)
T d1geqa_ 161 YLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGR 232 (248)
T ss_dssp EEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHGG
T ss_pred EEEecccccccchhhhhhHHHHHHHHhhhc--ccceeeecccCCHHHHHHHHhcCCCEEEECHHHHHHHHHhCc
Confidence 00011 11245666776664 799999999999999999999999999999999976644333
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=98.91 E-value=4e-08 Score=87.75 Aligned_cols=168 Identities=21% Similarity=0.268 Sum_probs=108.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCC---Cchh-----HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRL---GRRE-----ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT 203 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~---g~r~-----~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~ 203 (349)
.|.+.+.+.++.+.++|+|.|+|.+....+ |.-. +-+.++ .+.+. ++.++++|+..
T Consensus 28 P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G---------------~~~~~~~~~~~~~r~~~ 92 (261)
T d1rd5a_ 28 PDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASG---------------TTMDAVLEMLREVTPEL 92 (261)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTT---------------CCHHHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccC---------------cchhhhhhhhhcccccc
Confidence 466788999999999999999988743211 1100 111111 12233 67899999888
Q ss_pred CCcEEEEEecCH---HHHHHHHHcCCCEEEEec---------------CCC---------C-------------------
Q 018919 204 KLPILVKGVLTA---EDARIAVQAGAAGIIVSN---------------HGA---------R------------------- 237 (349)
Q Consensus 204 ~~pv~vK~v~~~---~~a~~a~~~G~d~I~v~~---------------~gg---------~------------------- 237 (349)
+.|+++-...++ .-.+.+.++|+|++++-. ||- +
T Consensus 93 ~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFvY~v 172 (261)
T d1rd5a_ 93 SCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLV 172 (261)
T ss_dssp SSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEE
T ss_pred cCceeeeeeecchhhHHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhHHHHHHhcCcchhhhh
Confidence 999987654333 114567888999988741 110 0
Q ss_pred ---CCCCc-----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcC--HHHHHHHH
Q 018919 238 ---QLDYV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVL 307 (349)
Q Consensus 238 ---~~~~~-----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G--~~gv~~~l 307 (349)
...+. ....+.+.++++.. ++||++..||++++|+.+....|||+|.||++++..+.... .+.+ +.+
T Consensus 173 s~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~~i~~~~~~~~~~-~~~ 249 (261)
T d1rd5a_ 173 SVNGVTGPRANVNPRVESLIQEVKKVT--NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGL-RRL 249 (261)
T ss_dssp CSSCCBCTTSCBCTHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHHH-HHH
T ss_pred hccCcccccccchhHHHHHHHHhhhcc--CCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHHHHHHcCCHHHHH-HHH
Confidence 00011 12245666666654 79999999999999999888899999999999998664322 1222 335
Q ss_pred HHHHHHHHHHH
Q 018919 308 EMLREEFELAM 318 (349)
Q Consensus 308 ~~l~~el~~~m 318 (349)
+.+.++|+..+
T Consensus 250 ~~~~~~lk~al 260 (261)
T d1rd5a_ 250 EEYARGMKNAL 260 (261)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 55555555543
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=98.78 E-value=3.6e-07 Score=85.47 Aligned_cols=142 Identities=16% Similarity=0.139 Sum_probs=90.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc--cCC-CCCC-ch-HHHHHHHHHhcC-CcEEEEE
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--FQG-LDLG-KM-DEDVKWLQTITK-LPILVKG 211 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~--~~~-~~~~-~~-~~~i~~i~~~~~-~pv~vK~ 211 (349)
..+.+++++++|+|+|+||... |+ +-++|..|. ...+. ..| +.++ .| .+.++.+|+.++ -+|.++.
T Consensus 162 f~~AA~rA~~aGfDgVEIH~ah---GY----Ll~qFlSp~-~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~ 233 (363)
T d1vyra_ 162 FRQAVANAREAGFDLVELHSAH---GY----LLHQFLSPS-SNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRV 233 (363)
T ss_dssp HHHHHHHHHHTTCSEEEEEECT---TS----HHHHHHCTT-TCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred HHHHHHHHHHhccceeeecccC---ce----eeeeeecCc-ccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceee
Confidence 3456678889999999999864 22 223343331 11111 111 1111 24 688999999984 3576766
Q ss_pred ec------------CHH----HHHHHHHcCCCEEEEecCCCCCCCCchh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 018919 212 VL------------TAE----DARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDV 274 (349)
Q Consensus 212 v~------------~~~----~a~~a~~~G~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv 274 (349)
.. +.+ .++.+.+.|+|.+.++... ...+++ ....-..+++.+ ++||++.| +.+++++
T Consensus 234 s~~~~~~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~---~~~~~~~~~~~~~~~~~~~--~~~vi~~G-~~t~~~a 307 (363)
T d1vyra_ 234 SPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETD---LAGGKPYSEAFRQKVRERF--HGVIIGAG-AYTAEKA 307 (363)
T ss_dssp CCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCB---TTBCCCCCHHHHHHHHHHC--CSEEEEES-SCCHHHH
T ss_pred cccccccchhhcccchHHHHHHHHHHHhcCCeeeecccCC---ccCCccccHHHHHHHHHhc--CceEEecC-CCCHHHH
Confidence 41 122 3567888999999998432 112222 233344555555 67877766 5699999
Q ss_pred HHHHHhC-CCEEEEchHHHH
Q 018919 275 FKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 275 ~kal~~G-A~~V~ig~~~l~ 293 (349)
.++|+.| ||.|.+||+++.
T Consensus 308 e~~l~~G~~DlV~~gR~lia 327 (363)
T d1vyra_ 308 EDLIGKGLIDAVAFGRDYIA 327 (363)
T ss_dssp HHHHHTTSCSEEEESHHHHH
T ss_pred HHHHHCCCcceehhhHHHHH
Confidence 9999999 899999999985
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.73 E-value=6e-07 Score=84.23 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=89.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc--cCC-CCCC-ch-HHHHHHHHHhcC-CcEEEEE
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--FQG-LDLG-KM-DEDVKWLQTITK-LPILVKG 211 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~--~~~-~~~~-~~-~~~i~~i~~~~~-~pv~vK~ 211 (349)
..+.+++++++|+|+|+||... |+- -++|..|. ...+. ..| +.++ .| .+.|+.+|+.++ ..|+++.
T Consensus 165 f~~AA~rA~~AGfDgVEIH~ah---GYL----l~qFLSp~-~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~ 236 (374)
T d1gwja_ 165 YRQAAQRAKRAGFDMVEVHAAN---ACL----PNQFLATG-TNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRL 236 (374)
T ss_dssp HHHHHHHHHHTTCSEEEEEECT---TCH----HHHHHSTT-TCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred HHHHHHHHHHhCCCEEEeccch---hhh----HHHHHHhh-cCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeee
Confidence 3456678889999999999864 222 23333331 01111 111 1111 35 688999999984 4566665
Q ss_pred ecC----------H-----HHHHHHHHcCCCEEEEecCCCCCCCC-chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 018919 212 VLT----------A-----EDARIAVQAGAAGIIVSNHGARQLDY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 212 v~~----------~-----~~a~~a~~~G~d~I~v~~~gg~~~~~-~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 275 (349)
... . +.+..+...|++.+.++...-..... -+.. ....+++.+ ++||++.|+| +++.+.
T Consensus 237 ~~~~~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~--~~pvi~~G~i-~~~~ae 311 (374)
T d1gwja_ 237 TPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEG--FREQMRQRF--KGGLIYCGNY-DAGRAQ 311 (374)
T ss_dssp CTTCCCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCCTT--HHHHHHHHC--CSEEEEESSC-CHHHHH
T ss_pred eeeccccCCcccchHHHHHHhhccccccCceEEEeccCcccCCCcchhHH--HHHHHHHHc--CCCEEEECCc-CHHHHH
Confidence 410 1 22455677899999887432111111 1111 234556666 7999999999 789999
Q ss_pred HHHHhC-CCEEEEchHHHH
Q 018919 276 KALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 276 kal~~G-A~~V~ig~~~l~ 293 (349)
++|+-| ||.|++||+++.
T Consensus 312 ~~l~~g~aDlV~~gR~~ia 330 (374)
T d1gwja_ 312 ARLDDNTADAVAFGRPFIA 330 (374)
T ss_dssp HHHHTTSCSEEEESHHHHH
T ss_pred HHHHcCCCcEehhhHHHHH
Confidence 999987 999999999985
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=98.72 E-value=7.3e-07 Score=83.34 Aligned_cols=145 Identities=17% Similarity=0.109 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc--cCC-CCCC-ch-HHHHHHHHHhcC-CcEEEEE
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--FQG-LDLG-KM-DEDVKWLQTITK-LPILVKG 211 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~--~~~-~~~~-~~-~~~i~~i~~~~~-~pv~vK~ 211 (349)
..+.+++++++|+|+|+||... |. +-++|..|. ..-+. ..| +.++ .| .+.|+.+|+.++ -+|+++.
T Consensus 160 f~~aA~rA~~AGfDgVeIH~ah---Gy----Ll~QFlSp~-tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~ 231 (364)
T d1icpa_ 160 FRVAARNAIEAGFDGVEIHGAH---GY----LIDQFMKDQ-VNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRI 231 (364)
T ss_dssp HHHHHHHHHHTTCSEEEEEECT---TS----HHHHHHCTT-TCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred HHHHHHHHHHhCCCeEEEeccC---cc----hhhceehhh-cCCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEe
Confidence 3466778889999999999854 22 222333331 01111 111 1112 24 688999999984 4677776
Q ss_pred ec---------CHHH------HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 018919 212 VL---------TAED------ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 276 (349)
Q Consensus 212 v~---------~~~~------a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k 276 (349)
.. +.++ ++.+...+++.+.++..............+....+++.+ +.|+++.||+ +++++.+
T Consensus 232 s~~~~~~~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~vi~~g~~-~~~~ae~ 308 (364)
T d1icpa_ 232 SPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAY--KGTFIVAGGY-DREDGNR 308 (364)
T ss_dssp CTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHC--CSCEEEESSC-CHHHHHH
T ss_pred cccccccCCcCcchHHHHHHHHHHhhccceeeeeeecCcccccccccccHHHHHHHHHhc--CCCEEEECCC-CHHHHHH
Confidence 42 1122 233445666666665321111001111112234455665 6899998885 7899999
Q ss_pred HHHhC-CCEEEEchHHHH
Q 018919 277 ALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 277 al~~G-A~~V~ig~~~l~ 293 (349)
+|+.| ||+|++||+++.
T Consensus 309 ~l~~g~aD~V~~gR~~ia 326 (364)
T d1icpa_ 309 ALIEDRADLVAYGRLFIS 326 (364)
T ss_dssp HHHTTSCSEEEESHHHHH
T ss_pred HHHcCCCceehhHHHHHH
Confidence 99975 999999999985
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.71 E-value=1.5e-07 Score=83.67 Aligned_cols=128 Identities=17% Similarity=0.225 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCCCEEEE-ecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE-ecC
Q 018919 138 VAQLVRRAERAGFKAIAL-TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG-VLT 214 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i-~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~-v~~ 214 (349)
..+.++...+.|++.+.+ +++.... .... .+.++.+.+.+++|+.+.+ +.+
T Consensus 32 P~~~a~~~~~~g~dei~ivDld~~~~--------------------------~~~~~~~~i~~i~~~~~~pi~vgGGIr~ 85 (253)
T d1thfd_ 32 PVELGKFYSEIGIDELVFLDITASVE--------------------------KRKTMLELVEKVAEQIDIPFTVGGGIHD 85 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCSSS--------------------------HHHHHHHHHHHHHTTCCSCEEEESSCCS
T ss_pred HHHHHHHHHHcCCCEEEEEeeccccc--------------------------CcccHHHHHHHHHhccCccceeeccccc
Confidence 456788888999998744 5543211 0111 5778999988999998876 578
Q ss_pred HHHHHHHHHcCCCEEEEecC---------------CC-----------------------CC------------------
Q 018919 215 AEDARIAVQAGAAGIIVSNH---------------GA-----------------------RQ------------------ 238 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~---------------gg-----------------------~~------------------ 238 (349)
.++++.+.++||+.|++... |. +.
T Consensus 86 ~e~i~~~l~~Ga~kviigs~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 165 (253)
T d1thfd_ 86 FETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGA 165 (253)
T ss_dssp HHHHHHHHHTTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTC
T ss_pred chhhhhHHhcCCCEEEEChHHhhChHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhccC
Confidence 99999999999999988620 11 00
Q ss_pred ---------CCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 239 ---------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 239 ---------~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.++ .-+.++.+.++.+.. ++|++++||+++.+|+.+++..|+++|.+|++|++
T Consensus 166 ~eii~tdI~~dGt~~G~d~~ll~~i~~~~--~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal~~ 229 (253)
T d1thfd_ 166 GEILLTSIDRDGTKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 229 (253)
T ss_dssp SEEEEEETTTTTSCSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred CEEEEEEecccCccCCccccccccccccc--cceEEEecCCCCHHHHHHHHHCCCCEEEEchHHHc
Confidence 001 123456666665443 79999999999999999999999999999999986
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.69 E-value=3e-07 Score=81.63 Aligned_cols=128 Identities=23% Similarity=0.296 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCCEEE-EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE-ecC
Q 018919 138 VAQLVRRAERAGFKAIA-LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG-VLT 214 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~-i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~-v~~ 214 (349)
..+.++...+.|++.+. ++++.... .... .+.++.+.+.+.+|+.+.+ +.+
T Consensus 32 P~~~a~~~~~~g~dei~iiDl~~~~~--------------------------~~~~~~~~i~~i~~~~~~pi~vgGGIrs 85 (251)
T d1ka9f_ 32 PVEAARAYDEAGADELVFLDISATHE--------------------------ERAILLDVVARVAERVFIPLTVGGGVRS 85 (251)
T ss_dssp HHHHHHHHHHHTCSCEEEEECCSSTT--------------------------CHHHHHHHHHHHHTTCCSCEEEESSCCS
T ss_pred HHHHHHHHHHcCCCEEEEEecccccc--------------------------cchhHHHHHHHHHhccCcchheeccccC
Confidence 34677888889999874 44543211 0112 5678999988899997776 689
Q ss_pred HHHHHHHHHcCCCEEEEec--------------------------------------CCCCC------------------
Q 018919 215 AEDARIAVQAGAAGIIVSN--------------------------------------HGARQ------------------ 238 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~--------------------------------------~gg~~------------------ 238 (349)
.++++.+.++|++.|++.. +|++.
T Consensus 86 ~e~~~~ll~~Ga~kVii~s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 165 (251)
T d1ka9f_ 86 LEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGA 165 (251)
T ss_dssp HHHHHHHHHHTCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCEEEECchhhhCHHHHHHHHHhhcccccccccchhhcccceEEEeccceecCCccHHHHHHHHHhcCC
Confidence 9999999999999999862 11110
Q ss_pred ---------CCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 239 ---------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 239 ---------~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.++ .-+.++.+.++.+.. ++|+|++||+++.+|+.+++..|+++|.+|++|++
T Consensus 166 ~eii~tdi~~dG~~~G~d~~l~~~i~~~~--~~pii~~GGv~~~~dl~~l~~~g~~gviig~al~~ 229 (251)
T d1ka9f_ 166 GEILLTSMDRDGTKEGYDLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF 229 (251)
T ss_dssp CEEEEEETTTTTTCSCCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred CEEEEEeecccCccCCcchhHHHHHHhhc--ceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHHHc
Confidence 011 123467777777765 79999999999999999999999999999999986
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.68 E-value=2.1e-06 Score=74.22 Aligned_cols=195 Identities=14% Similarity=0.118 Sum_probs=118.4
Q ss_pred eeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCC-----HHHHHhhCCCceEEEEee----cC
Q 018919 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS-----VEEVASTGPGIRFFQLYV----YK 133 (349)
Q Consensus 63 ~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~-----~e~i~~~~~~~~~~Ql~~----~~ 133 (349)
.+|.|++|++.+++..=-+ .+ ...+.++....|+-.+.=...... -+.+.+..+ +.-+.+-+ ..
T Consensus 3 L~I~g~~f~SRLilGTgkY---~s---~~~~~~ai~aSgaeiVTVAlRR~~~~~~~~~~~l~~i~-~~~~~lLPNTAGc~ 75 (251)
T d1xm3a_ 3 LTIGGKSFQSRLLLGTGKY---PS---FDIQKEAVAVSESDILTFAVRRMNIFEASQPNFLEQLD-LSKYTLLPNTAGAS 75 (251)
T ss_dssp EEETTEEESCCEEEECSCS---SC---HHHHHHHHHHHTCSEEEEETTSSTTC-------CTTCC-GGGSEEEEECTTCS
T ss_pred eEECCEEEEcceEEEcCCC---CC---HHHHHHHHHHhCCCEEEEEEeeecCcCCCCcchhhhcc-ccceEEccchHHHh
Confidence 4688999999999876222 12 235777888888876632111111 112222221 11112222 23
Q ss_pred ChhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK 210 (349)
+.+.-...++.++++ |-++|-+-+=.- +. ..-|+..+.++..+... +.-|+.=
T Consensus 76 tA~EAvr~A~lARE~~~t~~IKLEVi~D---------------~~---------~L~PD~~etl~Aae~Lv~eGF~VlpY 131 (251)
T d1xm3a_ 76 TAEEAVRIARLAKASGLCDMIKVEVIGC---------------SR---------SLLPDPVETLKASEQLLEEGFIVLPY 131 (251)
T ss_dssp SHHHHHHHHHHHHHTTCCSSEEECCBCC---------------TT---------TCCBCHHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEEecC---------------CC---------CcCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 444444555666665 666665443110 10 11233344444433332 5566655
Q ss_pred EecCHHHHHHHHHcCCCEEEEecCC-CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 211 GVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 211 ~v~~~~~a~~a~~~G~d~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
...++..|+++.++||..|.--+.. |+ .-|..+...|..+.+.. ++|||+|+||.++.|+.+++++|||+|++-+
T Consensus 132 ~~~D~v~ak~Le~~Gc~avMPlgsPIGS--g~Gl~n~~~l~~i~~~~--~vPvIvDAGIG~pSdAa~AMElG~daVLvNT 207 (251)
T d1xm3a_ 132 TSDDVVLARKLEELGVHAIMPGASPIGS--GQGILNPLNLSFIIEQA--KVPVIVDAGIGSPKDAAYAMELGADGVLLNT 207 (251)
T ss_dssp ECSCHHHHHHHHHHTCSCBEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred cCCCHHHHHHHHHcCChhHHHhhhhhhc--CCCcCChHHHHHHHhcC--CccEEEecCCCCHHHHHHHHHccCCEEEech
Confidence 5578999999999999998753321 11 12455667777777775 8999999999999999999999999999999
Q ss_pred HHH
Q 018919 290 PVV 292 (349)
Q Consensus 290 ~~l 292 (349)
++-
T Consensus 208 AIA 210 (251)
T d1xm3a_ 208 AVS 210 (251)
T ss_dssp HHH
T ss_pred hhh
Confidence 885
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=98.66 E-value=4.5e-07 Score=80.08 Aligned_cols=127 Identities=21% Similarity=0.233 Sum_probs=90.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~ 217 (349)
.+.++..++.|+.+|-+-.+.... .. -+++++.+++.+++||+.|.. .++.+
T Consensus 68 ~~~A~~y~~~GA~aiSVLTe~~~F--------------------------~G-s~~dl~~v~~~~~iPvLrKDFIid~~Q 120 (254)
T d1vc4a_ 68 VEAALAYARGGARAVSVLTEPHRF--------------------------GG-SLLDLKRVREAVDLPLLRKDFVVDPFM 120 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSS--------------------------CC-CHHHHHHHHHHCCSCEEEESCCCSHHH
T ss_pred HHHHHHHHhcCCceEEEEcCcccc--------------------------cc-cHHHHHHHHHHcCCCcccCCccccHHH
Confidence 356778889999999775553211 00 157889999999999999985 68888
Q ss_pred HHHHHHcCCCEEEEecC----------------C--------------------C-------CC---CCCchhhHHHHHH
Q 018919 218 ARIAVQAGAAGIIVSNH----------------G--------------------A-------RQ---LDYVPATIMALEE 251 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~----------------g--------------------g-------~~---~~~~~~~~~~l~~ 251 (349)
...+..+|||+|.+.-. | . |. +.....+...+.+
T Consensus 121 I~ea~~~GADaVLLIaall~~~l~~l~~~A~~lgl~~LVEvh~~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~l~~ 200 (254)
T d1vc4a_ 121 LEEARAFGASAALLIVALLGELTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGR 200 (254)
T ss_dssp HHHHHHTTCSEEEEEHHHHGGGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCceEEEeccHHHHhhhhcCCCCEEEEeccchhhhhcchHHHHHhhh
Confidence 99999999999987510 0 0 11 1122333344444
Q ss_pred HHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 252 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 252 i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+....+.++.+|+.+||.+.+|+ +.+..|+|+|.||++++.
T Consensus 201 ~i~~~~~~~i~IsESGI~~~~dv-~~l~~g~davLIGesLm~ 241 (254)
T d1vc4a_ 201 LARKRGFGGVLVAESGYSRKEEL-KALEGLFDAVLIGTSLMR 241 (254)
T ss_dssp HHHHTTCCSEEEEESCCCSHHHH-HTTTTTCSEEEECHHHHT
T ss_pred cccccCCCCEEEEccCCCCHHHH-HHHHcCCCEEEEChhhcC
Confidence 44443346889999999999997 556889999999999996
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.66 E-value=4e-07 Score=80.85 Aligned_cols=128 Identities=27% Similarity=0.397 Sum_probs=95.9
Q ss_pred HHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE-ecCH
Q 018919 139 AQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG-VLTA 215 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~-v~~~ 215 (349)
.+.++...+.|++.+ .++++.... .... ++.++.+.+...+|+.+.+ +.+.
T Consensus 35 ~~~a~~~~~~gadei~ivDl~~~~~--------------------------~~~~~~~~i~~i~~~~~~pi~~gGGIr~~ 88 (252)
T d1h5ya_ 35 VEMAVRYEEEGADEIAILDITAAPE--------------------------GRATFIDSVKRVAEAVSIPVLVGGGVRSL 88 (252)
T ss_dssp HHHHHHHHHTTCSCEEEEECCCCTT--------------------------THHHHHHHHHHHHHHCSSCEEEESSCCSH
T ss_pred HHHHHHHHHCCCCEEEEEecccccc--------------------------ccccHHHHHHHHHhhcCCcceeecccchh
Confidence 457788888999987 455554311 1112 5779999888999998877 5789
Q ss_pred HHHHHHHHcCCCEEEEec--------------------------------------CCCCC-------------------
Q 018919 216 EDARIAVQAGAAGIIVSN--------------------------------------HGARQ------------------- 238 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~--------------------------------------~gg~~------------------- 238 (349)
++++.+.++|++.|++.. +|++.
T Consensus 89 e~~~~ll~~G~~kVii~s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~ 168 (252)
T d1h5ya_ 89 EDATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAG 168 (252)
T ss_dssp HHHHHHHHHTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCS
T ss_pred hhhhhHhhcCCcEEEecccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHHHhcCCC
Confidence 999999999999999851 11110
Q ss_pred --------CCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 239 --------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 239 --------~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
.++ .-+.++.+.++.+.. ++|++++|||++.+|+.++..+|+++|.+|++|+++
T Consensus 169 eii~tdI~~dG~~~G~d~~~~~~i~~~~--~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l~~~ 232 (252)
T d1h5ya_ 169 EILLTSIDRDGTGLGYDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFR 232 (252)
T ss_dssp EEEEEETTTTTTCSCCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred EEEEEeecccCccCCcCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHHHcC
Confidence 001 113467777777665 799999999999999999999999999999999863
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=98.62 E-value=2e-07 Score=83.31 Aligned_cols=145 Identities=19% Similarity=0.182 Sum_probs=94.6
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCC---Cchh-----HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRL---GRRE-----ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT 203 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~---g~r~-----~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~ 203 (349)
.|.+.+.+.++.+.+ |+|.|+|.+....+ |.-. +-++++ .+.+. ++.++++|+..
T Consensus 27 P~~~~~~~~l~~l~~-gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G---------------~~~~~~~~~~~~~r~~~ 90 (271)
T d1ujpa_ 27 PSREGFLQAVEEVLP-YADLLEIGLPYSDPLGDGPVIQRASELALRKG---------------MSVQGALELVREVRALT 90 (271)
T ss_dssp SCHHHHHHHHHHHGG-GCSSEEEECCCCC----CHHHHHHHHHHHHTT---------------CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHc-CCCEEEeCCCCCCcccCCCeeeeeeeeccccc---------------cchhhHHHHHHHHhccc
Confidence 356677888888765 99999987753211 1000 111111 12333 78899999989
Q ss_pred CCcEEEEEecCH-------HHHHHHHHcCCCEEEEecC---------------CC---------CC--------------
Q 018919 204 KLPILVKGVLTA-------EDARIAVQAGAAGIIVSNH---------------GA---------RQ-------------- 238 (349)
Q Consensus 204 ~~pv~vK~v~~~-------~~a~~a~~~G~d~I~v~~~---------------gg---------~~-------------- 238 (349)
+.|+++-+..++ +.++.|.++|+|++++-.- |- +.
T Consensus 91 ~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i~~~s~GF 170 (271)
T d1ujpa_ 91 EKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGF 170 (271)
T ss_dssp CSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSC
T ss_pred CCcEEEEeechhhhhCCchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCCcchHHHHHHHHhCcch
Confidence 999988776433 4578899999999988421 00 00
Q ss_pred -----CC--Cch------hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 239 -----LD--YVP------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 239 -----~~--~~~------~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
.. +|. ...+.+.++++.. ++||++.-||++++|+.++ .|||+|.|||+|+..+..
T Consensus 171 IY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~~i~e 238 (271)
T d1ujpa_ 171 VYAVSVTGVTGMRERLPEEVKDLVRRIKART--ALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALEE 238 (271)
T ss_dssp EEEECC------------CCHHHHHHHHTTC--CSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHHHT
T ss_pred hhhhcccCccCccccchHHHHHHHHhhhccc--cCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHHHHHHh
Confidence 00 111 1234555555443 7999999999999998653 599999999999986543
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.62 E-value=4.3e-07 Score=83.23 Aligned_cols=134 Identities=21% Similarity=0.201 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ec
Q 018919 136 NVVAQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VL 213 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~ 213 (349)
+...+.++...+.|++.| .+++|....+. ..+..+++.|+++.+.+.+||.+.| +.
T Consensus 48 GdP~~~a~~~~~~gaDeL~ivDidas~~~~----------------------~~~~~~~~~I~~i~~~~~vPi~vGGGIr 105 (323)
T d1jvna1 48 GKPVQLAQKYYQQGADEVTFLNITSFRDCP----------------------LKDTPMLEVLKQAAKTVFVPLTVGGGIK 105 (323)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEEC---CCC----------------------GGGCHHHHHHHHHTTTCCSCEEEESSCS
T ss_pred CCHHHHHHHHHHCCCCEEEEEECcCCCCCc----------------------CCCchHHHHHHhhccccceeEEEecCcc
Confidence 455778888899999997 45665421100 0011226789999999999999887 33
Q ss_pred C-----------HHHHHHHHHcCCCEEEEec-------------------------------------------------
Q 018919 214 T-----------AEDARIAVQAGAAGIIVSN------------------------------------------------- 233 (349)
Q Consensus 214 ~-----------~~~a~~a~~~G~d~I~v~~------------------------------------------------- 233 (349)
+ .|.|+.+.++|||-|++..
T Consensus 106 si~di~~~~~~~~e~A~~ll~~GadKVvI~T~ai~~p~~~~e~~~~~~n~~li~~i~~~fGsq~IvvsiD~k~~~~~~~~ 185 (323)
T d1jvna1 106 DIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQA 185 (323)
T ss_dssp CEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGG
T ss_pred cHHHhhhccchhhHHHHHHHHcCCCeEEechHHhhChHHHHHHHhhcccchhHHHHHHHhCCceEEEEEEEEeccccccc
Confidence 3 4679999999999998852
Q ss_pred --------------------------CCCCC---------------------------CCC--chhhHHHHHHHHHHhcC
Q 018919 234 --------------------------HGARQ---------------------------LDY--VPATIMALEEVVKATQG 258 (349)
Q Consensus 234 --------------------------~gg~~---------------------------~~~--~~~~~~~l~~i~~~~~~ 258 (349)
+|++. .|+ ....++.+.++.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIlltdIdrDGt~~G~D~el~~~i~~~~-- 263 (323)
T d1jvna1 186 DTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAV-- 263 (323)
T ss_dssp GCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHHC--
T ss_pred cccccccccccccCCCccceeEEEEEcCCeEecCchHHHHhhhhhccCcceeEEEeecccccccccchhHHHHHHHhC--
Confidence 12210 011 123677888887776
Q ss_pred CCcEEEecCCCCHHHHHHHHH-hCCCEEEEchHHHH
Q 018919 259 RIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVY 293 (349)
Q Consensus 259 ~ipvia~GGI~~~~dv~kal~-~GA~~V~ig~~~l~ 293 (349)
++|||++||+.+.+|+.+++. .|+++|.+|++|.+
T Consensus 264 ~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~ 299 (323)
T d1jvna1 264 KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 299 (323)
T ss_dssp SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred CCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHc
Confidence 799999999999999999987 57999999999986
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.58 E-value=7.2e-07 Score=78.47 Aligned_cols=122 Identities=15% Similarity=0.184 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHH
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDAR 219 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~ 219 (349)
-.+..+...|+|++.+-+.. .+.+..+.+-......++-+++ .+-+.++++
T Consensus 116 ~QI~ea~~~GADaiLLI~~~----------------------------L~~~~l~~l~~~a~~lgl~~Lv-Evh~~~El~ 166 (247)
T d1a53a_ 116 SQIDDAYNLGADTVLLIVKI----------------------------LTERELESLLEYARSYGMEPLI-EINDENDLD 166 (247)
T ss_dssp HHHHHHHHHTCSEEEEEGGG----------------------------SCHHHHHHHHHHHHTTTCCCEE-EECSHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhh----------------------------ccHHHHHHHHHHHHHHhhhHHh-hcCCHHHHH
Confidence 35667788999999876532 1121234444444456777666 578999999
Q ss_pred HHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 220 ~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
++.++|++.|-+.|..-..+... .+...++.+.++.++.+|+.|||.+++|+.++..+|||+|.||++++.
T Consensus 167 ~a~~~~a~iIGINnRnL~t~~vd---~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk 237 (247)
T d1a53a_ 167 IALRIGARFIGINSRDLETLEIN---KENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMR 237 (247)
T ss_dssp HHHHTTCSEEEEESBCTTTCCBC---HHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHHhCCCCeEeeeccChhhhhhh---hhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcC
Confidence 99999999998877654333333 344455666777789999999999999999998999999999999996
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.55 E-value=1.6e-05 Score=69.04 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=115.1
Q ss_pred ceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCC------HHHHHhhCC-CceEE--EEeec
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS------VEEVASTGP-GIRFF--QLYVY 132 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~------~e~i~~~~~-~~~~~--Ql~~~ 132 (349)
...+.|++|++.+++..=-+ .+ ...+.++....|+-.+.-...... .+.+....+ ..+++ +--+.
T Consensus 2 Pl~I~~~~f~SRLilGTGky---~s---~~~~~~ai~aSgaeiVTVAvRR~~~~~~~~~~~l~~~i~~~~~~~LPNTAGc 75 (243)
T d1wv2a_ 2 PFVIAGRTYGSRLLVGTGKY---KD---LDETRRAIEASGAEIVTVAVRRTNIGQNPDEPNLLDVIPPDRYTILPNTAGC 75 (243)
T ss_dssp CEEETTEEESCCEEECCSCS---SS---HHHHHHHHHHSCCSEEEEEGGGCCC-------------CTTTSEEEEECTTC
T ss_pred CeEECCEEEEcceEEEcCCC---CC---HHHHHHHHHHhCCCEEEEEccccccCCCcccchHHHhccccCeeeccccccc
Confidence 35688899999999876221 12 335777888889887621111111 111211111 11111 11112
Q ss_pred CChhHHHHHHHHHHHcC--CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEE
Q 018919 133 KDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPIL 208 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G--~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~ 208 (349)
.+.+.....++.+.+.. -+.+-+.+=.. +. ..-|+..+.++..+... +.-++
T Consensus 76 ~taeeAv~~A~larE~~~~~~~iKLEVi~d---------------~~---------~L~Pd~~etl~Aa~~Lv~egF~Vl 131 (243)
T d1wv2a_ 76 YDAVEAVRTCRLARELLDGHNLVKLEVLAD---------------QK---------TLFPNVVETLKAAEQLVKDGFDVM 131 (243)
T ss_dssp CSHHHHHHHHHHHHTTTTSCCEEEECCBSC---------------TT---------TCCBCHHHHHHHHHHHHTTTCEEE
T ss_pred ccHHHHHHHHHHHHHHhCCCceEEEeeecc---------------cc---------ccCCcHHHHHHHHHHhhcCceEEE
Confidence 34555556666667753 36665543110 00 01233344444444332 44454
Q ss_pred EEEecCHHHHHHHHHcCCCEEEEecCC-CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 209 VKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 209 vK~v~~~~~a~~a~~~G~d~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.=...++..++++.+.|+..+.--+.. |+. .|..+...+..+.+.. ++|||+++||.+++|+.++|++|||+|.+
T Consensus 132 py~~~D~v~ak~le~~Gc~~vMplgsPIGsg--~Gi~n~~~l~~i~~~~--~vpvivdAGIg~psdaa~AMElG~dgVLv 207 (243)
T d1wv2a_ 132 VYTSDDPIIARQLAEIGCIAVMPLAGLIGSG--LGICNPYNLRIILEEA--KVPVLVDAGVGTASDAAIAMELGCEAVLM 207 (243)
T ss_dssp EEECSCHHHHHHHHHSCCSEEEECSSSTTCC--CCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred eccCCCHHHHhHHHHcCceeeeecccccccc--cccccHHHHHhccccC--CcceEeecccCCHHHHHHHHHccCCEEEe
Confidence 434467889999999999998764431 211 2333445566666654 89999999999999999999999999999
Q ss_pred chHHHH
Q 018919 288 GRPVVY 293 (349)
Q Consensus 288 g~~~l~ 293 (349)
.|++..
T Consensus 208 nsaIa~ 213 (243)
T d1wv2a_ 208 NTAIAH 213 (243)
T ss_dssp SHHHHT
T ss_pred chHhhc
Confidence 998864
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=98.51 E-value=1e-06 Score=76.60 Aligned_cols=170 Identities=19% Similarity=0.188 Sum_probs=106.9
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEE-E-eec--CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchh
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ-L-YVY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Q-l-~~~--~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~ 166 (349)
..+.+.|.++|+..+.- .+..++..++...+....- + |+. ...+.-...++++.+.|++-|++-++...
T Consensus 23 ~~lc~~A~~~~~~aVcV--~P~~v~~a~~~l~~vkv~tVigFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~----- 95 (225)
T d1mzha_ 23 EEFVLKSEELGIYAVCV--NPYHVKLASSIAKKVKVCCVIGFPLGLNKTSVKVKEAVEAVRDGAQELDIVWNLSA----- 95 (225)
T ss_dssp HHHHHHHHHTTCSEEEE--CGGGHHHHHHHCSSSEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHH-----
T ss_pred HHHHHHHHHhCCcEEEE--CHHHHHHHHhhccCCceEEEeccCCCCCcHHHHHHHHHHHHHcCCCeEEEeechhh-----
Confidence 46888888888765421 2222333333322221111 1 322 23444456677888899999887664210
Q ss_pred HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-----cCHHH----HHHHHHcCCCEEEEecCCC
Q 018919 167 ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGA 236 (349)
Q Consensus 167 ~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-----~~~~~----a~~a~~~G~d~I~v~~~gg 236 (349)
+.. .+-+. .++++++++..+.+ .+|.+ ++.++ ++.+.++|+|+|..|..-+
T Consensus 96 --l~~----------------g~~~~v~~ei~~v~~~~~~~-~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~ 156 (225)
T d1mzha_ 96 --FKS----------------EKYDFVVEELKEIFRETPSA-VHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGFA 156 (225)
T ss_dssp --HHT----------------TCHHHHHHHHHHHHHTCTTS-EEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCS
T ss_pred --hhc----------------ccHHHHHHHHHHHHHhccCc-eeehhhhhccCCHHHHHHHHHHHHHcccceEeecCCCC
Confidence 000 01122 45688888776544 35876 34433 5678899999999875311
Q ss_pred CCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 237 RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 237 ~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
.+..+.+.+..+++.+++++.|=++||||+.+|+.+++.+||+.++..+.
T Consensus 157 ----~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~Ga~RiGtSs~ 206 (225)
T d1mzha_ 157 ----PRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTSSG 206 (225)
T ss_dssp ----SSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred ----CCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHhchhheecCcH
Confidence 22345677777777777789999999999999999999999998766553
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=98.49 E-value=4.8e-06 Score=71.51 Aligned_cols=170 Identities=20% Similarity=0.203 Sum_probs=106.6
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC--CceEEEE--eec--CChhHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQL--YVY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~--~~~~~Ql--~~~--~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~ 164 (349)
..+.+.|.++|+..+. ..+..++-.++..+ +....-. |+. .+.+.-...++.+.+.|++-|.+-++..
T Consensus 21 ~~lc~~A~~~~~~aVc--V~P~~v~~a~~~l~~s~v~v~~VigFP~G~~~~~~k~~e~~~ai~~GA~EiD~V~n~~---- 94 (211)
T d1ub3a_ 21 AKAAEEALEYGFYGLC--IPPSYVAWVRARYPHAPFRLVTVVGFPLGYQEKEVKALEAALACARGADEVDMVLHLG---- 94 (211)
T ss_dssp HHHHHHHHHHTCSEEE--CCGGGHHHHHHHCTTCSSEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEECCHH----
T ss_pred HHHHHHHHHhCCeEEE--ECHHHHHHHHHHccCCCCceEEEEecccccCcHHHHHHHHHHHHHcCCCeEEEeeccc----
Confidence 4677778888877542 12222332333222 2211111 332 2344455677788889999987655421
Q ss_pred hhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-----cCHHH----HHHHHHcCCCEEEEecC
Q 018919 165 READIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 165 r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-----~~~~~----a~~a~~~G~d~I~v~~~ 234 (349)
.++. .+.+. .++++.+++..+. ..+|.+ ++.++ ++.+.++|+|+|..|..
T Consensus 95 ---~~~~----------------g~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG 154 (211)
T d1ub3a_ 95 ---RAKA----------------GDLDYLEAEVRAVREAVPQ-AVLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTG 154 (211)
T ss_dssp ---HHHT----------------TCHHHHHHHHHHHHHHSTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCS
T ss_pred ---hhhc----------------CCHHHHHHHHHHHHHhccC-CceEEEeccccCCHHHHHHHHHHHHHhccceEEecCC
Confidence 0000 02222 4568888887753 356887 34443 46688999999998753
Q ss_pred CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 235 GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 235 gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
-+ .+..+.+.+..+++.+++++.|=++|||||.+|+.+++.+||+.++-.++
T Consensus 155 ~~----~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l~aGa~riGtSs~ 206 (211)
T d1ub3a_ 155 FG----PRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTSSG 206 (211)
T ss_dssp SS----SCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred CC----CCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHHhhhHhccCcH
Confidence 11 12345666667777777789999999999999999999999998776554
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=98.49 E-value=6.9e-07 Score=76.98 Aligned_cols=118 Identities=17% Similarity=0.228 Sum_probs=90.3
Q ss_pred EEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CC
Q 018919 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KL 205 (349)
Q Consensus 127 ~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~ 205 (349)
+-+....+.+...+.++.+.+.|.+.+++|+++|.. .+.|++++++. ++
T Consensus 17 ipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~a------------------------------~~~I~~l~~~~p~~ 66 (212)
T d1vhca_ 17 VPVIALDNADDILPLADTLAKNGLSVAEITFRSEAA------------------------------ADAIRLLRANRPDF 66 (212)
T ss_dssp EEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTH------------------------------HHHHHHHHHHCTTC
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhH------------------------------HHHHHHHHhcCCCc
Confidence 334444677888889999999999999999976521 46788898776 67
Q ss_pred cEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 018919 206 PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 285 (349)
Q Consensus 206 pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V 285 (349)
-|.+..+.+.++++.+.++|+++++--+. ..+.+....+ . ++|.+ -|+.|+.++.+|+.+||+.|
T Consensus 67 ~vGaGTV~~~~~~~~a~~aGa~FivSP~~----------~~~v~~~a~~-~--~i~~i--PGv~TpsEi~~A~~~G~~~v 131 (212)
T d1vhca_ 67 LIAAGTVLTAEQVVLAKSSGADFVVTPGL----------NPKIVKLCQD-L--NFPIT--PGVNNPMAIEIALEMGISAV 131 (212)
T ss_dssp EEEEESCCSHHHHHHHHHHTCSEEECSSC----------CHHHHHHHHH-T--TCCEE--CEECSHHHHHHHHHTTCCEE
T ss_pred eEeeeecccHHHHHHHHhhCCcEEECCCC----------CHHHHHHHHh-c--CCCcc--CCcCCHHHHHHHHHCCCCEE
Confidence 78888899999999999999999954211 1233333322 2 67776 88999999999999999998
Q ss_pred EEch
Q 018919 286 FIGR 289 (349)
Q Consensus 286 ~ig~ 289 (349)
=+=-
T Consensus 132 K~FP 135 (212)
T d1vhca_ 132 KFFP 135 (212)
T ss_dssp EETT
T ss_pred EEcc
Confidence 7643
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=1.5e-06 Score=74.89 Aligned_cols=129 Identities=18% Similarity=0.248 Sum_probs=97.1
Q ss_pred CCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc
Q 018919 112 SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (349)
Q Consensus 112 ~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (349)
.+.+++.+..| .+-+....+.+...+.++.+.+.|++.++|++++|..
T Consensus 6 ~~~~~~l~~~~---iipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~tp~a----------------------------- 53 (213)
T d1wbha1 6 TSAESILTTGP---VVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECA----------------------------- 53 (213)
T ss_dssp SCHHHHHHSCS---EEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTH-----------------------------
T ss_pred cCHHHHHHhCC---EEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhH-----------------------------
Confidence 45677766654 2223344688888999999999999999999976521
Q ss_pred hHHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC
Q 018919 192 MDEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270 (349)
Q Consensus 192 ~~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 270 (349)
.+.|+.++++. ++-|.+..+.+.++++.+.++|+++++--+. +.+.+....+ .++|++ =|+.|
T Consensus 54 -~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~~----------~~~v~~~a~~---~~i~~i--PGv~T 117 (213)
T d1wbha1 54 -VDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGL----------TEPLLKAATE---GTIPLI--PGIST 117 (213)
T ss_dssp -HHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESSC----------CHHHHHHHHH---SSSCEE--EEESS
T ss_pred -HHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCCC----------CHHHHHHHHh---cCCCcc--CCcCC
Confidence 46789998886 6778888899999999999999999965221 1233333222 257776 78999
Q ss_pred HHHHHHHHHhCCCEEEEc
Q 018919 271 GTDVFKALALGASGIFIG 288 (349)
Q Consensus 271 ~~dv~kal~~GA~~V~ig 288 (349)
+.++..|+.+||+.|=+=
T Consensus 118 psEi~~A~~~G~~~vKlF 135 (213)
T d1wbha1 118 VSELMLGMDYGLKEFKFF 135 (213)
T ss_dssp HHHHHHHHHTTCCEEEET
T ss_pred HHHHHHHHHCCCCEEEec
Confidence 999999999999999764
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.47 E-value=7e-07 Score=78.55 Aligned_cols=127 Identities=18% Similarity=0.255 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHH
Q 018919 139 AQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~ 216 (349)
.+.++...+.|++.+ .+++|... . .+...+.++.+.+.+.+|+.+.+ +.+.+
T Consensus 34 ~~~a~~~~~~ga~~l~i~DLd~~~------------~--------------~~~~~~~i~~i~~~~~~pi~vGGGIrs~~ 87 (239)
T d1vzwa1 34 LEAALAWQRSGAEWLHLVDLDAAF------------G--------------TGDNRALIAEVAQAMDIKVELSGGIRDDD 87 (239)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHHH------------T--------------SCCCHHHHHHHHHHCSSEEEEESSCCSHH
T ss_pred HHHHHHHHHcCCCEEEEEeecccc------------c--------------ccchHHHHHHHHhhcCcceEeecccccch
Confidence 456777788999997 44554210 0 01115778899988999999887 57999
Q ss_pred HHHHHHHcCCCEEEEecC---------------------------------CCCC-------------------------
Q 018919 217 DARIAVQAGAAGIIVSNH---------------------------------GARQ------------------------- 238 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~---------------------------------gg~~------------------------- 238 (349)
+++.+.+.|++.|++... |...
T Consensus 88 ~~~~ll~~Ga~kVvi~s~~~~~~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~eii~tdi 167 (239)
T d1vzwa1 88 TLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDI 167 (239)
T ss_dssp HHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC
T ss_pred hhhhhhccccccchhhHHhhhccccchhhhccCCceeeeeeccceeeecCccceeeccccchhhhhhhhccccEEEEEee
Confidence 999999999999998621 1000
Q ss_pred -CCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh---CCCEEEEchHHHH
Q 018919 239 -LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPVVY 293 (349)
Q Consensus 239 -~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~---GA~~V~ig~~~l~ 293 (349)
.++ .-+.++.+..+.+.. ++|++++|||++.+|+.+.-.+ |+++|.+|+++++
T Consensus 168 ~~dGt~~G~d~~l~~~i~~~~--~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~~ 226 (239)
T d1vzwa1 168 AKDGTLQGPNLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYA 226 (239)
T ss_dssp -------CCCHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHT
T ss_pred cccceecCCcchhhhhhhhcc--CceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHHC
Confidence 011 123566777776655 7999999999999999777554 9999999999976
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=98.47 E-value=5.8e-07 Score=79.09 Aligned_cols=100 Identities=21% Similarity=0.335 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecC-----------------CC------------------
Q 018919 193 DEDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH-----------------GA------------------ 236 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~-----------------gg------------------ 236 (349)
+++++.+++.+++||+.|.. .++.++..+..+|||+|.+.-. |-
T Consensus 90 ~~~l~~vr~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgle~LvEvh~~~El~~al~~ 169 (251)
T d1i4na_ 90 PAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSV 169 (251)
T ss_dssp THHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTT
T ss_pred HHHHHHHhhcccCchhhhhhhhCHHHHHHHHhhccceEEeecccccHHHHHHHHHHHHHhCCeeecccCCHHHHHHHhcc
Confidence 47788899888999999984 7888889999999999887521 00
Q ss_pred ----------CCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 237 ----------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 237 ----------~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
|.+..-........++...++.+..+|+.+||++++|+ +.+..|+|+|.||+.++.
T Consensus 170 ~~a~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IaESGI~~~~d~-~~l~~G~davLIG~sLm~ 235 (251)
T d1i4na_ 170 IRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPREL-KDLRGKVNAVLVGTSIMK 235 (251)
T ss_dssp CCCSEEEEECBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGH-HHHTTTCSEEEECHHHHH
T ss_pred cccceeeeeecchhccchhhhHHHHHHhhCCCCCEEEEcCCCCCHHHH-HHHHhCCCEEEEChHHhC
Confidence 00111111223334455556668899999999999998 456789999999999996
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=2e-06 Score=75.71 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecCC--C----------------------------------
Q 018919 194 EDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHG--A---------------------------------- 236 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~g--g---------------------------------- 236 (349)
++++.+++.+++||+-|.. .++.+...+..+|||+|.+.-.- .
T Consensus 98 ~~l~~v~~~~~~PiLrKDFIid~~QI~ear~~GADavLLI~~~L~~~~l~~l~~~a~~lgl~~LVEvh~~~El~~a~~~~ 177 (254)
T d1piia2 98 NFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALG 177 (254)
T ss_dssp THHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT
T ss_pred HHHHHHHhccccccchhcccCcHHHHHHHHhhccchhhhhHhhhcccHHHHHHHHHHHHhhhHHHhhccHHHHHHHHhhc
Confidence 6788888889999999984 78899999999999999875210 0
Q ss_pred --------CCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 237 --------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 237 --------~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
|.+..-...+....++...++.+..+++.+||++++|+.. +..|+|+|.||+.++.
T Consensus 178 a~iIGINnRnL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~-l~~g~davLiGeslm~ 241 (254)
T d1piia2 178 AKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRE-LSHFANGFLIGSALMA 241 (254)
T ss_dssp CSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHH-HTTTCSEEEECHHHHT
T ss_pred ccccCccccchhhhhhhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHH-HHcCCCEEEEChHHhC
Confidence 0111111123444455566667889999999999999854 6889999999999985
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=98.39 E-value=8.4e-06 Score=76.29 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc--cCC-CCCC-ch-HHHHHHHHHhcC-CcEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--FQG-LDLG-KM-DEDVKWLQTITK-LPILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~--~~~-~~~~-~~-~~~i~~i~~~~~-~pv~vK~v 212 (349)
.+.+++++++|+|+|+||... |. +-++|..|. ...+. ..| +.++ .| .+.|+.+|+.++ -+++++..
T Consensus 162 ~~aA~~A~~aGfDgVEIh~ah---Gy----Ll~qFlSp~-~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~ 233 (380)
T d1q45a_ 162 CLSALNAIRAGFDGIEIHGAH---GY----LIDQFLKDG-INDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVS 233 (380)
T ss_dssp HHHHHHHHHHTCSEEEEEECT---TS----HHHHHHCTT-TCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEEC
T ss_pred HHHHHHHHHhCcceeeeccch---hh----hHhhhhccc-cccCccccCccccchhhhHHHHHHHHHHHccccCceEEEe
Confidence 355677888999999999853 22 223333331 11111 111 1111 24 678999999884 34444433
Q ss_pred c----------CH-----HHH------HHHHHcCCCEEEEecCCCCCC---C---Cchh--hHHHHHHHHHHhcCCCcEE
Q 018919 213 L----------TA-----EDA------RIAVQAGAAGIIVSNHGARQL---D---YVPA--TIMALEEVVKATQGRIPVF 263 (349)
Q Consensus 213 ~----------~~-----~~a------~~a~~~G~d~I~v~~~gg~~~---~---~~~~--~~~~l~~i~~~~~~~ipvi 263 (349)
. .. +.+ ..+...+++.+.++....... . .++. .......+++.+ ++||+
T Consensus 234 ~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pv~ 311 (380)
T d1q45a_ 234 PAIDHLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAY--NGTFM 311 (380)
T ss_dssp TTCCGGGCCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHS--CSCEE
T ss_pred ecccccccccccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccCchhhhHHHHHHHhhcc--CCcEE
Confidence 1 01 111 122236788888874322110 0 0111 123344455555 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 264 LDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
+.||+ +++++.++|+.| ||.|.+||+++.
T Consensus 312 ~~Gg~-~~~~ae~~l~~G~~DlV~~gR~lia 341 (380)
T d1q45a_ 312 SSGGF-NKELGMQAVQQGDADLVSYGRLFIA 341 (380)
T ss_dssp EESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred eCCCC-CHHHHHHHHHcCCccchhhhHHHHH
Confidence 99998 689999999987 999999999985
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=98.38 E-value=2.4e-06 Score=75.30 Aligned_cols=169 Identities=18% Similarity=0.111 Sum_probs=105.2
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhC--CCceEEE-E-eec--CChhHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTG--PGIRFFQ-L-YVY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~--~~~~~~Q-l-~~~--~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~ 164 (349)
..+.+.|.++|+..+.- .+..++-.++.. .+....- + |+. .+.+.-...++.+.+.|++-|++-++...
T Consensus 54 ~~lc~~A~~~~~aaVcV--~P~~v~~a~~~L~gs~v~v~tVigFP~G~~~~~~K~~Ea~~Ai~~GAdEID~Vin~~~--- 128 (251)
T d1o0ya_ 54 KKLCLEARENRFHGVCV--NPCYVKLAREELEGTDVKVVTVVGFPLGANETRTKAHEAIFAVESGADEIDMVINVGM--- 128 (251)
T ss_dssp HHHHHHHHHHTCSEEEE--CGGGHHHHHHHHTTSCCEEEEEESTTTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHH---
T ss_pred HHHHHHHhhcCceEEEE--CHHHHHHHHHHhcCCCceEEeeccCCCCCCcHHHHHHHHHHHHHcCCceEEEEeccch---
Confidence 46778888888765421 222233333221 1211111 1 332 23344456677888899999877664310
Q ss_pred hhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-----cCHHH----HHHHHHcCCCEEEEecC
Q 018919 165 READIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 165 r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-----~~~~~----a~~a~~~G~d~I~v~~~ 234 (349)
+++ .+.+. .++|+.+++..+ ...+|.+ ++.++ ++.+.++|+|+|..|..
T Consensus 129 ----l~~----------------g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~e~~~a~~ia~~aGadfvKTSTG 187 (251)
T d1o0ya_ 129 ----LKA----------------KEWEYVYEDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTG 187 (251)
T ss_dssp ----HHT----------------TCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCS
T ss_pred ----hhc----------------CCHHHHHHHHHHHHHHhc-ccceeeeecccccCcHHHHHHHHHHHHhCcceeeccCC
Confidence 000 01222 466888888764 3456887 23333 56688999999998753
Q ss_pred CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 235 GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 235 gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
-+ .+..+.+.+..+++.+++++.|=++|||++.+|+.+++.+||+.++-.+
T Consensus 188 f~----~~gat~e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i~aGa~riGtSs 238 (251)
T d1o0ya_ 188 FG----TGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSS 238 (251)
T ss_dssp SS----SCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred CC----CCCcCHHHHHHHHHHhCCCceEeccCCcCCHHHHHHHHHHhhHHhCCCc
Confidence 12 2344566666666777778999999999999999999999999875443
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=98.35 E-value=3.3e-06 Score=79.71 Aligned_cols=144 Identities=15% Similarity=0.066 Sum_probs=80.5
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc--cCC-CCCC-ch-HHHHHHHHHhc-CCcEEEEEec
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--FQG-LDLG-KM-DEDVKWLQTIT-KLPILVKGVL 213 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~--~~~-~~~~-~~-~~~i~~i~~~~-~~pv~vK~v~ 213 (349)
+.+++++++|+|+|+||... |+ +-++|..|. ..-+. ..| +.++ .| .+.++.+|+.+ +-||.+|+..
T Consensus 175 ~AA~rA~~AGfDgVEIH~aH---GY----Ll~qFLSp~-tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~IgvRls~ 246 (399)
T d1oyaa_ 175 QAAKNSIAAGADGVEIHSAN---GY----LLNQFLDPH-SNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSP 246 (399)
T ss_dssp HHHHHHHHTTCSEEEEECCT---TS----HHHHHHCTT-TCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECT
T ss_pred HHHHHHHHhCCceEehhhhH---HH----HHHHhhccc-ccccccccCcchhhhhHHHHHHHHhhhheeeccCceEEech
Confidence 56677888999999999754 22 223343332 01111 111 1111 34 67899999987 3489998742
Q ss_pred C--------------H----HHHHHHHHcC-----CCEEEEecCCCCC--CC--CchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 214 T--------------A----EDARIAVQAG-----AAGIIVSNHGARQ--LD--YVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 214 ~--------------~----~~a~~a~~~G-----~d~I~v~~~gg~~--~~--~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
. . +.+..+...+ .+.+.++...... .. .+.-.......+++.+ ++|||+.|
T Consensus 247 ~d~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~PVi~~G 324 (399)
T d1oyaa_ 247 YGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIW--KGPVIRAG 324 (399)
T ss_dssp TCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCCCSCCTTHHHHHC--CSCEEEES
T ss_pred hhcccccCCccccchHHHHHHHHHHHHHhccccccccceeeecccCCCccccccccccchhHHHHHHHHh--CCCEEEEC
Confidence 1 0 1122333222 3334333211100 00 0000001112244555 79999999
Q ss_pred CCCCHHHHHHHHHh-CCCEEEEchHHHH
Q 018919 267 GVRRGTDVFKALAL-GASGIFIGRPVVY 293 (349)
Q Consensus 267 GI~~~~dv~kal~~-GA~~V~ig~~~l~ 293 (349)
||.+..++.+.+.. |||.|.+||+++.
T Consensus 325 ~i~~~~~~~~~i~~~~aDlV~~gR~lia 352 (399)
T d1oyaa_ 325 NFALHPEVVREEVKDKRTLIGYGRFFIS 352 (399)
T ss_dssp SCTTCHHHHHHHTTSTTEEEECCHHHHH
T ss_pred CCCChHHHHHHHHcCCCeEhHHHHHHHH
Confidence 99998998888875 6999999999985
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=98.32 E-value=2.4e-06 Score=73.64 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=92.0
Q ss_pred EEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CC
Q 018919 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KL 205 (349)
Q Consensus 127 ~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~ 205 (349)
+-+....+.+...+.++.+.+.|++.++++++.|. -++.|+.+++++ ++
T Consensus 20 ipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~~p~------------------------------a~~~i~~l~~~~p~~ 69 (216)
T d1mxsa_ 20 LPVITIAREEDILPLADALAAGGIRTLEVTLRSQH------------------------------GLKAIQVLREQRPEL 69 (216)
T ss_dssp EEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTH------------------------------HHHHHHHHHHHCTTS
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChh------------------------------HHHHHHHHHHhCCCc
Confidence 33444567888899999999999999999997652 157789999887 67
Q ss_pred cEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 018919 206 PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 285 (349)
Q Consensus 206 pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V 285 (349)
-|.+..+.+.++++.+.++|+++++--+. ..+.+... .. .++|.+ =|+.|+.++.+|+.+||+.|
T Consensus 70 ~vGaGTV~~~~~~~~a~~aGa~FivsP~~----------~~~v~~~a-~~--~~i~~i--PGv~TpsEi~~A~~~G~~~v 134 (216)
T d1mxsa_ 70 CVGAGTVLDRSMFAAVEAAGAQFVVTPGI----------TEDILEAG-VD--SEIPLL--PGISTPSEIMMGYALGYRRF 134 (216)
T ss_dssp EEEEECCCSHHHHHHHHHHTCSSEECSSC----------CHHHHHHH-HH--CSSCEE--CEECSHHHHHHHHTTTCCEE
T ss_pred ceeeeeeecHHHHHHHHhCCCCEEECCCC----------cHHHHHHH-Hh--cCCCcc--CCcCCHHHHHHHHHCCCCEE
Confidence 78888899999999999999999964211 12333322 22 267776 78999999999999999999
Q ss_pred EEchH
Q 018919 286 FIGRP 290 (349)
Q Consensus 286 ~ig~~ 290 (349)
=+=-+
T Consensus 135 KlFPA 139 (216)
T d1mxsa_ 135 KLFPA 139 (216)
T ss_dssp EETTH
T ss_pred Eeccc
Confidence 87654
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.21 E-value=3.3e-05 Score=66.57 Aligned_cols=134 Identities=19% Similarity=0.227 Sum_probs=93.3
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEec-CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~-d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK 210 (349)
.|.....+.++++++.|++.+-+++ |.- | +| +-.+ .+.++++++.+++|+-+.
T Consensus 11 ~d~~~l~~~i~~~~~~g~d~iHiDimDg~------------F-vp------------n~s~g~~~i~~i~~~t~~~~dvH 65 (217)
T d2flia1 11 ADYANFASELARIEETDAEYVHIDIMDGQ------------F-VP------------NISFGADVVASMRKHSKLVFDCH 65 (217)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEEEEBSS------------S-SS------------CBCBCHHHHHHHHTTCCSEEEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEcccCc------------C-CC------------ccccCHHHHHHHHhcCCCceEeE
Confidence 5677778899999999999987654 211 1 11 1122 577899998889988776
Q ss_pred Ee-cCH-HHHHHHHHcCCCEEEEecC---------------CC---------CC----------CC-----------Cc-
Q 018919 211 GV-LTA-EDARIAVQAGAAGIIVSNH---------------GA---------RQ----------LD-----------YV- 242 (349)
Q Consensus 211 ~v-~~~-~~a~~a~~~G~d~I~v~~~---------------gg---------~~----------~~-----------~~- 242 (349)
.. .+| +.+..+.++|+|.|+++-. |- +. .+ +|
T Consensus 66 LMv~~P~~~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~id~vliM~V~pG~~Gq 145 (217)
T d2flia1 66 LMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQ 145 (217)
T ss_dssp EESSSGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSC
T ss_pred EEecCHHHHHHHHHHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhhcCEEEEEEEcCccccc
Confidence 64 444 4578888999999998521 10 00 00 12
Q ss_pred ---hhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 243 ---PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+..++-+.++++.++ .+++|.+||||+. +.+.++..+|||.+.+|++++
T Consensus 146 ~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn~-~~i~~l~~aGad~~V~Gsaif 200 (217)
T d2flia1 146 AFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDN-KTIRACYEAGANVFVAGSYLF 200 (217)
T ss_dssp CCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCT-TTHHHHHHHTCCEEEESHHHH
T ss_pred ccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCCH-HHHHHHHHCCCCEEEEchHHh
Confidence 345666666666542 3689999999975 678888899999999998765
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=98.18 E-value=3.5e-06 Score=74.03 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=89.5
Q ss_pred HHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHH
Q 018919 139 AQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~ 216 (349)
.+.++...+.|++.+ .+++|... .+ .+.....++.+++ ...|+.+.+ +.+.+
T Consensus 33 ~~~a~~~~~~g~~~l~ivDLda~~---------~~----------------~~~~~~~~~~~~~-~~~pl~~gGGI~s~~ 86 (241)
T d1qo2a_ 33 VELVEKLIEEGFTLIHVVDLSNAI---------EN----------------SGENLPVLEKLSE-FAEHIQIGGGIRSLD 86 (241)
T ss_dssp HHHHHHHHHTTCCCEEEEEHHHHH---------HC----------------CCTTHHHHHHGGG-GGGGEEEESSCCSHH
T ss_pred HHHHHHHHHCCCCEEEEEeccccc---------cc----------------CCcchhheehhcc-cccchhhhhhhhhhh
Confidence 457778888999987 56665321 00 0111344555555 457998877 68999
Q ss_pred HHHHHHHcCCCEEEEec--------------------------------CCCCC---C----------------------
Q 018919 217 DARIAVQAGAAGIIVSN--------------------------------HGARQ---L---------------------- 239 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~--------------------------------~gg~~---~---------------------- 239 (349)
+++.+.+.|+|.|++.. +|.+. .
T Consensus 87 ~~~~~~~~Ga~kVvi~s~~~~~~~~~~~~~~~~~~~~v~iD~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~eii~~dI 166 (241)
T d1qo2a_ 87 YAEKLRKLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEI 166 (241)
T ss_dssp HHHHHHHTTCCEEEECHHHHHCTTHHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTTTCCEEEEEET
T ss_pred hhhhccccccceEecCcccccCchhhhhhcccccceeeecccccccccccCcccceeeehhHHHHHhhccccceEEEeeh
Confidence 99999999999998851 11110 0
Q ss_pred C----CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC------CCEEEEchHHHH
Q 018919 240 D----YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG------ASGIFIGRPVVY 293 (349)
Q Consensus 240 ~----~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G------A~~V~ig~~~l~ 293 (349)
+ ..-+.++.+.++.+.. ++|++++||+++.+|+.++..+| +++|.+|++|++
T Consensus 167 d~dGt~~G~d~~l~~~i~~~~--~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvivG~al~~ 228 (241)
T d1qo2a_ 167 EKDGTLQEHDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLE 228 (241)
T ss_dssp THHHHTCCCCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHT
T ss_pred hhhhhccccchhhhhhhhccC--CceEEEECCCCCHHHHHHHHHccccccCCEeeEEEHHHHHC
Confidence 0 0123567777777665 79999999999999999998765 899999999975
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=98.17 E-value=3.7e-05 Score=65.86 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=102.1
Q ss_pred hHHHHHHHHHcCCeEE-ecCCCCCC---HHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCch
Q 018919 90 EYATARAASAAGTIMT-LSSWSTSS---VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~-~~~~~~~~---~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r 165 (349)
-..+++++.+.|+..+ ++-.+... ++.+++..|+. .+-.-.-.+ .+.++++.++|++.++ +|
T Consensus 28 ~~~~~~al~~~Gi~~iEitl~~~~a~~~I~~l~~~~p~~-~vGaGTV~~----~~~~~~a~~aGa~Fiv----SP----- 93 (212)
T d1vhca_ 28 ILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDF-LIAAGTVLT----AEQVVLAKSSGADFVV----TP----- 93 (212)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTC-EEEEESCCS----HHHHHHHHHHTCSEEE----CS-----
T ss_pred HHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCc-eEeeeeccc----HHHHHHHHhhCCcEEE----CC-----
Confidence 3478888888888866 33223332 33444455532 222111122 4567788888888865 22
Q ss_pred hHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchh
Q 018919 166 EADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPA 244 (349)
Q Consensus 166 ~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~ 244 (349)
.+ .+.++..+ ..++|++ -++.|+.++..|.++|++.+.+.-.+. -+|+
T Consensus 94 -------------------------~~~~~v~~~a~-~~~i~~i-PGv~TpsEi~~A~~~G~~~vK~FPA~~---~gG~- 142 (212)
T d1vhca_ 94 -------------------------GLNPKIVKLCQ-DLNFPIT-PGVNNPMAIEIALEMGISAVKFFPAEA---SGGV- 142 (212)
T ss_dssp -------------------------SCCHHHHHHHH-HTTCCEE-CEECSHHHHHHHHHTTCCEEEETTTTT---TTHH-
T ss_pred -------------------------CCCHHHHHHHH-hcCCCcc-CCcCCHHHHHHHHHCCCCEEEEccccc---cchH-
Confidence 12 24455544 4589987 478999999999999999999964321 1233
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 245 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 245 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
..++.+..-++ +++++.+|||.. +++.++|++|+.++.+|+.++
T Consensus 143 --~~lkal~~p~p-~~~~~ptGGV~~-~N~~~yl~~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 143 --KMIKALLGPYA-QLQIMPTGGIGL-HNIRDYLAIPNIVACGGSWFV 186 (212)
T ss_dssp --HHHHHHHTTTT-TCEEEEBSSCCT-TTHHHHHTSTTBCCEEECGGG
T ss_pred --HHHHHHhcccc-CCeEEecCCCCH-HHHHHHHhCCCEEEEEChhhC
Confidence 34444444443 799999999965 899999999999999999776
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=2.1e-05 Score=66.56 Aligned_cols=165 Identities=12% Similarity=0.050 Sum_probs=96.3
Q ss_pred CCHHHHHhhCCCc-eEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC
Q 018919 112 SSVEEVASTGPGI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (349)
Q Consensus 112 ~~~e~i~~~~~~~-~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~ 190 (349)
..++++++..++. .+.-+. ..|...+ ..+.+.++|++.+.+|..+. .
T Consensus 43 ~~i~~l~~~~~~~~i~~d~k-~~d~~~~--~~~~~~~~gad~vtvh~~~g-----------------------------~ 90 (213)
T d1q6oa_ 43 RAVRDLKALYPHKIVLADAK-IADAGKI--LSRMCFEANADWVTVICCAD-----------------------------I 90 (213)
T ss_dssp HHHHHHHHHCTTSEEEEEEE-ECSCHHH--HHHHHHHTTCSEEEEETTSC-----------------------------H
T ss_pred HHHHHHHHhcccccceeEEe-eccchHH--HHHHHHHcCCCEEEEeccCC-----------------------------c
Confidence 3467777766633 333222 2344332 34556788999988875321 1
Q ss_pred chHH-HHHHHHHhcCCcEEEEEe--cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecC
Q 018919 191 KMDE-DVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 267 (349)
Q Consensus 191 ~~~~-~i~~i~~~~~~pv~vK~v--~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 267 (349)
+..+ .++..+ ..+..+.+-.. .+.+.+....+.|++.+++......+..+.......+.++.+..+..+++..+||
T Consensus 91 ~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~~~~~i~~~gG 169 (213)
T d1q6oa_ 91 NTAKGALDVAK-EFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGG 169 (213)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEECSCCCHHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHTTCEEEEESS
T ss_pred hHHHHHHHHHH-HcCCceecccCCCCCHHHHHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhccCceEecCCC
Confidence 1122 233333 34554444332 4678889999999999887432000011111122334444444344789999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018919 268 VRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 268 I~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~ 316 (349)
++ ++++.+++.+|||.+.+||+++.+ +...+.++.++++++.
T Consensus 170 i~-~~~~~~~~~~Gad~iVVGr~I~~a------~dp~~a~~~~~~~i~~ 211 (213)
T d1q6oa_ 170 LA-LEDLPLFKGIPIHVFIAGRSIRDA------ASPVEAARQFKRSIAE 211 (213)
T ss_dssp CC-GGGGGGGTTSCCSEEEESHHHHTS------SCHHHHHHHHHHHHHH
T ss_pred cC-cCCHHHHHHcCCCEEEEChhhcCC------CCHHHHHHHHHHHHHH
Confidence 85 689999999999999999998742 2233556666666654
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=98.17 E-value=1.7e-05 Score=69.03 Aligned_cols=127 Identities=20% Similarity=0.186 Sum_probs=74.9
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~v 212 (349)
+.+.-...++.+.+.|++-|.+-++.. ..++ ..|+.++++.+.. .....+|.+
T Consensus 86 ~~~~k~~E~~~Ai~~GAdEID~Vin~~--~~~~------------------------~~~~ev~~~~~~~~~~g~~lKVI 139 (234)
T d1n7ka_ 86 PLEVKLVEAQTVLEAGATELDVVPHLS--LGPE------------------------AVYREVSGIVKLAKSYGAVVKVI 139 (234)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECCCGG--GCHH------------------------HHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHHHHHcCCCeEEEEechh--hhhh------------------------hhHHHHHHHHHHHhccCceEEEE
Confidence 344555677788889999877644321 0000 0144444443322 223457876
Q ss_pred -----cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCC
Q 018919 213 -----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 283 (349)
Q Consensus 213 -----~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~ 283 (349)
.+.+. ++.+.++|+|+|..|. |.......+.....+.+. ..+.++.|=++|||||.+|+.+++.+||+
T Consensus 140 lEt~~L~~~~i~~a~~~a~~aGadFVKTST-G~~~~gat~~~~~~l~~~--~~~~~vgIKasGGIrt~~~a~~~i~aGa~ 216 (234)
T d1n7ka_ 140 LEAPLWDDKTLSLLVDSSRRAGADIVKTST-GVYTKGGDPVTVFRLASL--AKPLGMGVKASGGIRSGIDAVLAVGAGAD 216 (234)
T ss_dssp CCGGGSCHHHHHHHHHHHHHTTCSEEESCC-SSSCCCCSHHHHHHHHHH--HGGGTCEEEEESSCCSHHHHHHHHHTTCS
T ss_pred EeccccchHHHHHHHHHHHHhhhhheeecc-cccCCCCCHHHHHHHHHH--hcCCCCcEEeeCCcCCHHHHHHHHHccCc
Confidence 34443 4567899999999764 321111112222222222 22337899999999999999999999999
Q ss_pred EEEEch
Q 018919 284 GIFIGR 289 (349)
Q Consensus 284 ~V~ig~ 289 (349)
-++-.+
T Consensus 217 rIGtSs 222 (234)
T d1n7ka_ 217 IIGTSS 222 (234)
T ss_dssp EEEETT
T ss_pred eeecch
Confidence 765443
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=98.13 E-value=2e-05 Score=67.28 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=65.1
Q ss_pred EEEEEecCHHHHHHHHHcCCCEEEEecCCCCC--CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCE
Q 018919 207 ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 284 (349)
Q Consensus 207 v~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~ 284 (349)
++.--+-+.+++..+.+.|+|++.++.-..+. .+..+..++.+.++.+.. ++||++-||| +.+++.+++.+||++
T Consensus 101 iig~s~h~~~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~--~~Pv~AiGGI-~~~ni~~~~~~Ga~g 177 (206)
T d1xi3a_ 101 IIGASVYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGI-NKDNAREVLKTGVDG 177 (206)
T ss_dssp EEEEEESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSC-CTTTHHHHHTTTCSE
T ss_pred ccccccCCHHHHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhc--CCCEEEECCC-CHHHHHHHHHhCCCE
Confidence 33334568899999999999999997532221 122344678888888776 7999999999 668899999999999
Q ss_pred EEEchHHHH
Q 018919 285 IFIGRPVVY 293 (349)
Q Consensus 285 V~ig~~~l~ 293 (349)
|.+.+.++.
T Consensus 178 vAvis~I~~ 186 (206)
T d1xi3a_ 178 IAVISAVMG 186 (206)
T ss_dssp EEESHHHHT
T ss_pred EEEhHHHHC
Confidence 999999874
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.09 E-value=3.2e-05 Score=66.38 Aligned_cols=100 Identities=24% Similarity=0.292 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEe---------cCCC------------CCC------------
Q 018919 194 EDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS---------NHGA------------RQL------------ 239 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~---------~~gg------------~~~------------ 239 (349)
+.++++.+...+|++.|.. .+.-+++.+...|+|++.=| +|-. |.+
T Consensus 48 ~~i~ei~~~vsipvmak~righ~~eaqiLe~~~vd~ideseVLTpad~~~hi~k~~fkvpfVcg~r~Lgealrri~EgAa 127 (254)
T d1znna1 48 TVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGAS 127 (254)
T ss_dssp HHHHHHHHHCSSCEEEEEETTCHHHHHHHHHHTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCS
T ss_pred HHHHHHHHhcccccccccCCCchHHHHhHHhhCCCcccHhHhcccccHHHhhcccceeeeeeCCCCccchhHHHHHHHHH
Confidence 6788888889999999986 56788999999999999876 1211 100
Q ss_pred ------CC--c----------------------------------hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 018919 240 ------DY--V----------------------------------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 277 (349)
Q Consensus 240 ------~~--~----------------------------------~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka 277 (349)
.. | ....+.+.++.+.-+-.+|++++|||.++.|+..+
T Consensus 128 mIrtkGeagtgnvveav~h~R~i~~~i~~~~~m~~~el~~~ak~lg~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~ 207 (254)
T d1znna1 128 MLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALM 207 (254)
T ss_dssp EEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESSCCSHHHHHHH
T ss_pred HHHhCCccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCchHHHHHHHHhCCCCceEEecCCCCChhhHHHH
Confidence 00 0 00123344444432236999999999999999999
Q ss_pred HHhCCCEEEEchHHHH
Q 018919 278 LALGASGIFIGRPVVY 293 (349)
Q Consensus 278 l~~GA~~V~ig~~~l~ 293 (349)
+++|||+|++|+.+..
T Consensus 208 MelG~dgV~v~s~I~~ 223 (254)
T d1znna1 208 MHLGADGVFVGSGIFK 223 (254)
T ss_dssp HHTTCSEEEECGGGGG
T ss_pred HHcCCCEEEEcchhhc
Confidence 9999999999998764
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=4.9e-05 Score=65.11 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=106.1
Q ss_pred CChhhHHHHHHHHHcCCeEE-ecCCCCCCH---HHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCC
Q 018919 86 HPEGEYATARAASAAGTIMT-LSSWSTSSV---EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (349)
Q Consensus 86 ~~~~~~~la~aa~~~G~~~~-~~~~~~~~~---e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~ 161 (349)
+++.-..+++++.+.|+..+ ++-.++..+ +.+++..|.. .+-.-.-.+ .+.++++.++|++.+. +|.
T Consensus 25 ~~~~a~~~~~al~~~Gi~~iEitl~tp~a~~~I~~l~~~~p~~-~vGaGTV~~----~~~~~~a~~aGa~Fiv----SP~ 95 (213)
T d1wbha1 25 KLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEA-IVGAGTVLN----PQQLAEVTEAGAQFAI----SPG 95 (213)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTS-EEEEESCCS----HHHHHHHHHHTCSCEE----ESS
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCC-eeecccccc----HHHHHHHHHCCCcEEE----CCC
Confidence 34444689999999999866 432233333 3445555642 122111122 4567888999999875 121
Q ss_pred CCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 018919 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY 241 (349)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~ 241 (349)
.+ .+.++..+ ..++|++ -++.|+.++..|.++|++.+.+.-... .
T Consensus 96 --------------------------~~---~~v~~~a~-~~~i~~i-PGv~TpsEi~~A~~~G~~~vKlFPA~~----~ 140 (213)
T d1wbha1 96 --------------------------LT---EPLLKAAT-EGTIPLI-PGISTVSELMLGMDYGLKEFKFFPAEA----N 140 (213)
T ss_dssp --------------------------CC---HHHHHHHH-HSSSCEE-EEESSHHHHHHHHHTTCCEEEETTTTT----T
T ss_pred --------------------------CC---HHHHHHHH-hcCCCcc-CCcCCHHHHHHHHHCCCCEEEeccchh----c
Confidence 01 24455544 4688887 479999999999999999999964311 1
Q ss_pred chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 242 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 242 ~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
| ....+..+..-+ .+++++.+|||.. +++.+++.+|+.++.+|+.++
T Consensus 141 G--g~~~lkal~~p~-p~~~~~ptGGV~~-~n~~~yl~~g~v~~~~Gs~l~ 187 (213)
T d1wbha1 141 G--GVKALQAIAGPF-SQVRFCPTGGISP-ANYRDYLALKSVLCIGGSWLV 187 (213)
T ss_dssp T--HHHHHHHHHTTC-TTCEEEEBSSCCT-TTHHHHHTSTTBSCEEEGGGS
T ss_pred C--hHHHHHHhcCcc-cCCceeeeCCCCH-HHHHHHHhCCCEEEEEChhhC
Confidence 1 134455444444 3799999999985 899999999999999999665
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=97.96 E-value=0.00014 Score=62.74 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=65.5
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecC--CCCCCCCchhhHHHHHHHHH---HhcCCCcEEEecCCCC
Q 018919 196 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVK---ATQGRIPVFLDGGVRR 270 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~---~~~~~ipvia~GGI~~ 270 (349)
+++.++ .++.+++ .+.+.++++.+.+.+.+.|..-+. .|+.....+...+.+.+..+ ....++||+..|||.+
T Consensus 107 ~~~~~~-~gl~~iv-cvge~~~~~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~ 184 (226)
T d1w0ma_ 107 VAKAKS-LGLDVVV-CAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIES 184 (226)
T ss_dssp HHHHHH-TTCEEEE-EESSHHHHHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCS
T ss_pred HHHHHH-cCCEEEE-ecCchHHhhhhhccccceeeecchhhccCCCCCChhhhhHhhhhhhhhhccCCCceEEEecCcCC
Confidence 444443 3665544 467888999999999998877542 22211112222333322222 2235799999999999
Q ss_pred HHHHHHHHHhCCCEEEEchHHHH
Q 018919 271 GTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 271 ~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
..|+..++..|+|+|.||++++.
T Consensus 185 ~n~~~~~~~~g~dGvLVGsA~l~ 207 (226)
T d1w0ma_ 185 GDDVAAALRLGTRGVLLASAAVK 207 (226)
T ss_dssp HHHHHHHHHTTCSEEEECHHHHT
T ss_pred hHHHHHHhcCCCCEEEechheec
Confidence 99999999999999999999985
|
| >d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.93 E-value=0.00037 Score=59.73 Aligned_cols=190 Identities=16% Similarity=0.114 Sum_probs=117.4
Q ss_pred hHHHHHHHHHcCCeEEecCCCC----------CCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCC
Q 018919 90 EYATARAASAAGTIMTLSSWST----------SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~~----------~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~ 159 (349)
+..-.+-+.+.|..-.++|.-+ ..++++....+++..+|+.. .+.+.+.+.++++...+-. +.|-+.+
T Consensus 11 d~~~i~~~~~~g~i~GvTTNPsl~~k~g~~~~~~~~~i~~~~~~~is~ev~~-~~~~~m~~~a~~l~~~~~n-i~VKIP~ 88 (218)
T d1vpxa_ 11 NLEEIKKGVEWGIVDGVTTNPTLISKEGAEFKQRVKEICDLVKGPVSAEVVS-LDYEGMVREARELAQISEY-VVIKIPM 88 (218)
T ss_dssp CHHHHHHHHHTTCCCEEECCC-----------CHHHHHHHHHCSCEEEECSC-CSHHHHHHHHHHHHTTCTT-EEEEEES
T ss_pred CHHHHHHHHhcCCcCcCccCHHHHHHcCCCHHHHHHHHHhccCCcchhhhcc-CcHHHHHHHHHHHhccccc-eEEEecc
Confidence 3445555566665444444311 11334444445678889865 5666666666666555544 3444432
Q ss_pred CCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL 239 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~ 239 (349)
. +.-.+.++.+++. ++++-+-.+.+.+.+..|.++|++.|... -||-.
T Consensus 89 t-----------------------------~~G~~ai~~L~~~-Gi~~n~Tavfs~~Qa~~Aa~aga~yispy--~gR~~ 136 (218)
T d1vpxa_ 89 T-----------------------------PDGIKAVKTLSAE-GIKTNVTLVFSPAQAILAAKAGATYVSPF--VGRMD 136 (218)
T ss_dssp S-----------------------------HHHHHHHHHHHHT-TCCEEEEEECSHHHHHHHHHHTCSEEEEB--HHHHH
T ss_pred c-----------------------------ccchHHHHHHHHc-CCceeeEEecCHHHHHHHHhcCCCEEEee--ecchh
Confidence 1 0003557777664 89999999999999999999999988663 33322
Q ss_pred CCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018919 240 DYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 240 ~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~ 316 (349)
+.|......+.++.+.+ +.+..|++ +.+|+..++.+++..|||.+-+.-.++..+... +-..+.++.+.++.++
T Consensus 137 d~g~d~~~~i~~~~~~~~~~~~~tkil~-AS~r~~~~v~~a~~~G~d~iTip~~v~~~l~~~--~~t~~~v~~F~~D~~k 213 (218)
T d1vpxa_ 137 DLSNDGMRMLGEIVEIYNNYGFETEIIA-ASIRHPMHVVEAALMGVDIVTMPFAVLEKLFKH--PMTDLGIERFMEDWKK 213 (218)
T ss_dssp HTTSCHHHHHHHHHHHHHHHTCSCEEEE-BSCCSHHHHHHHHHHTCSEEEECHHHHHHHTCC--HHHHHHHHHHHHHHHH
T ss_pred hhcccchhhHHHHHHHHhhhcccceeee-eccCCHHHHHHHHHcCCCEEEcCHHHHHHHHCC--CccHHHHHHHHHHHHH
Confidence 23333445555554443 33566776 669999999999999999999999998776532 2222334444444443
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.93 E-value=0.00025 Score=60.92 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=90.6
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEE
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVK 210 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK 210 (349)
..|.....+.++++++.|++.+-+++--- .| +| +-.+ .+.++++++.++.|+-+-
T Consensus 10 ~ad~~~l~~ei~~l~~~~~d~iHiDimDg-----------~F-vp------------n~t~~~~~i~~i~~~~~~~~dvH 65 (220)
T d1h1ya_ 10 SSDFANLAAEADRMVRLGADWLHMDIMDG-----------HF-VP------------NLTIGAPVIQSLRKHTKAYLDCH 65 (220)
T ss_dssp GSCGGGHHHHHHHHHHTTCSEEEEEEEBS-----------SS-SS------------CBCBCHHHHHHHHTTCCSEEEEE
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEeeecC-----------cc-cc------------ccccCchhhhhhhhhcchhhhhH
Confidence 35667788899999999999876654210 01 11 1233 577888888888877655
Q ss_pred Ee-cCH-HHHHHHHHcCCCEEEEecC----------------CC---------CC-------------CC----------
Q 018919 211 GV-LTA-EDARIAVQAGAAGIIVSNH----------------GA---------RQ-------------LD---------- 240 (349)
Q Consensus 211 ~v-~~~-~~a~~a~~~G~d~I~v~~~----------------gg---------~~-------------~~---------- 240 (349)
.. .++ +......++|++.|+++-. |- +. .+
T Consensus 66 LMv~~p~~~i~~~~~~g~~~I~~H~E~~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~l~~~~~~d~vlim~v~PG 145 (220)
T d1h1ya_ 66 LMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPG 145 (220)
T ss_dssp EESSCGGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTT
T ss_pred HHhcchhhhhHHhhhcccceeeecccccchhHHHHHHHHHHcCCCcceeeccccchhHHHHHHhcccccceEEEEecCCC
Confidence 43 333 4466677788888887521 00 00 01
Q ss_pred -Cc----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 241 -YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 241 -~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+| +..++-+.++++.. .+++|.+||||+. +.+.++..+|||.+.+|++++
T Consensus 146 ~~GQ~f~~~~l~kI~~l~~~~-~~~~I~VDGGIn~-~~i~~l~~aGad~~V~GS~if 200 (220)
T d1h1ya_ 146 FGGQKFMPEMMEKVRALRKKY-PSLDIEVDGGLGP-STIDVAASAGANCIVAGSSIF 200 (220)
T ss_dssp CSSCCCCGGGHHHHHHHHHHC-TTSEEEEESSCST-TTHHHHHHHTCCEEEESHHHH
T ss_pred CcccccchhhhHHHHHHHhcC-CCceEEEEecCCH-HHHHHHHHCCCCEEEECHHHH
Confidence 11 34566777776543 4799999999998 578888899999999999865
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.90 E-value=5.4e-05 Score=65.56 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=72.4
Q ss_pred HHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC--CCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 018919 198 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDV 274 (349)
Q Consensus 198 ~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~--~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv 274 (349)
.+|+..+-.++.--+-+.++++.+.+.|+|+|.++.-..+. .+..+ ...+.+..+.+. ..++||++-||| +.+++
T Consensus 108 ~~r~~~~~~iig~S~h~~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~-~~~~Pv~AiGGI-~~~ni 185 (226)
T d2tpsa_ 108 EVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ-GISIPIVGIGGI-TIDNA 185 (226)
T ss_dssp HHHHHHTTSEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT-TCCCCEEEESSC-CTTTS
T ss_pred hhhhcccceeeeeeccchHHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHHh-cCCCCEEEecCC-CHHHH
Confidence 33444443344334578999999999999999997532221 11112 224445444432 137999999999 77999
Q ss_pred HHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018919 275 FKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 275 ~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~ 316 (349)
.+++.+||++|.+.+.++.+ +.....++.+++.++.
T Consensus 186 ~~l~~~Ga~giAvis~I~~a------~dp~~~~~~~~~~~~~ 221 (226)
T d2tpsa_ 186 APVIQAGADGVSMISAISQA------EDPESAARKFREEIQT 221 (226)
T ss_dssp HHHHHTTCSEEEESHHHHTS------SCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEhHHhhcC------CCHHHHHHHHHHHHHH
Confidence 99999999999999998742 2233444555555443
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=0.00066 Score=58.22 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=100.4
Q ss_pred HHHHHhhC--CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc
Q 018919 114 VEEVASTG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (349)
Q Consensus 114 ~e~i~~~~--~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (349)
++++.+.. +++..+|+.. .+.+.+.+.++.+.+.+-. +.|-+.+. ..
T Consensus 43 ~~~i~~~~~~~~~is~ev~~-~~~~~mi~~A~~l~~~~~n-v~IKIP~t-----------------------------~~ 91 (220)
T d1l6wa_ 43 LPQLHEAMGGQGRLFAQVMA-TTAEGMVNDALKLRSIIAD-IVVKVPVT-----------------------------AE 91 (220)
T ss_dssp HHHHHHHTTTCSEEEEECCC-SSHHHHHHHHHHHHHHSTT-CEEEEECS-----------------------------HH
T ss_pred HHHHHHHhCcCCeEEeEEee-ehhhhhHHHHHHHHHhccc-cEEEeecc-----------------------------cc
Confidence 34455443 3678899865 5666666666666555433 34444321 00
Q ss_pred hHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh---cCCCcEEEecCC
Q 018919 192 MDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGV 268 (349)
Q Consensus 192 ~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI 268 (349)
-.+.++.+.+. ++++-+-.+.+...+..|.++|++.|.. .-||-.+.|....+.+.++.+.+ +.+..|++ +.+
T Consensus 92 g~~ai~~L~~~-Gi~vn~Tavfs~~Qa~~Aa~aga~yvsp--y~gR~~d~g~dg~~~i~~~~~~~~~~~~~tkIl~-AS~ 167 (220)
T d1l6wa_ 92 GLAAIKMLKAE-GIPTLGTAVYGAAQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLA-ASF 167 (220)
T ss_dssp HHHHHHHHHHH-TCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEE-BCC
T ss_pred ccchhhhhhhc-ccchhhhhcccHHHHHHhhhcCCcEEee--eeeehhhcccCChHHHHHHHHHHHhcCCCceEee-hhc
Confidence 03556777554 8999999999999999999999999876 33442233444455555555543 33555555 679
Q ss_pred CCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 269 RRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
|+..++.+++.+|||.+-+.-.++..+.
T Consensus 168 R~~~~v~~~~~~G~d~iTip~~v~~~l~ 195 (220)
T d1l6wa_ 168 KTPRQALDCLLAGCESITLPLDVAQQMI 195 (220)
T ss_dssp SSHHHHHHHHHTTCSEEEECHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCEEEcCHHHHHHHh
Confidence 9999999999999999999999988664
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=97.72 E-value=0.00017 Score=62.11 Aligned_cols=96 Identities=21% Similarity=0.277 Sum_probs=64.1
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEec-----CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC
Q 018919 196 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~-----~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 270 (349)
+++.++ .++.+++ .+....+++.+.+.+.+.|-.-. +|.+.....+.....+.+..+.+..++||+..|||.+
T Consensus 109 i~~~~~-~gl~~i~-cv~~~~~~~~~~~~~~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~ 186 (224)
T d1hg3a_ 109 IRRAEE-VGLMTMV-CSNNPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGIST 186 (224)
T ss_dssp HHHHHH-HTCEEEE-EESSHHHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCS
T ss_pred HHHHHH-cCCceee-chhhHHHHHhhhhcccceEEecchHhhccccCCCchhhhhhhhhhhhhhhhccccceEEeCCcCC
Confidence 444443 3665544 35677888888899988876643 2211111112222222223333445899999999999
Q ss_pred HHHHHHHHHhCCCEEEEchHHHH
Q 018919 271 GTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 271 ~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+..++.+|+|+|.||++++.
T Consensus 187 ~n~~~~~~~~g~dGvLVGsAsl~ 209 (224)
T d1hg3a_ 187 GEDVKKAIELGTVGVLLASGVTK 209 (224)
T ss_dssp HHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHhCCCCEEEEcceeec
Confidence 99999999999999999999985
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=97.69 E-value=0.001 Score=57.34 Aligned_cols=135 Identities=24% Similarity=0.310 Sum_probs=92.7
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEec-CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEE
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILV 209 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~-d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~v 209 (349)
..|.....+.+++++++|++.+-+++ |.. | +| +-.+ .+.++++++.+++|+=+
T Consensus 19 ~~d~~~l~~~i~~l~~~g~d~iHiDImDG~------------F-vp------------n~t~~~~~v~~i~~~t~~~~dv 73 (230)
T d1rpxa_ 19 SANFSKLGEQVKAIEQAGCDWIHVDVMDGR------------F-VP------------NITIGPLVVDSLRPITDLPLDV 73 (230)
T ss_dssp GSCGGGHHHHHHHHHHTTCCCEEEEEEBSS------------S-SS------------CBCCCHHHHHHHGGGCCSCEEE
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEeCccCC------------c-CC------------ccccChHHHhhhhhccCceeee
Confidence 35777788999999999999876654 210 1 12 1122 46788998888888766
Q ss_pred EEe-cCH-HHHHHHHHcCCCEEEEecC-----------------CC---------CC----------CC-----------
Q 018919 210 KGV-LTA-EDARIAVQAGAAGIIVSNH-----------------GA---------RQ----------LD----------- 240 (349)
Q Consensus 210 K~v-~~~-~~a~~a~~~G~d~I~v~~~-----------------gg---------~~----------~~----------- 240 (349)
-.. .++ +.+....++|+|.|+++-+ |- +. .|
T Consensus 74 HLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~~vD~VllM~V~PGf 153 (230)
T d1rpxa_ 74 HLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGF 153 (230)
T ss_dssp EEESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCTTC
T ss_pred eeeecchhhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhhCCEEEEEEecCCc
Confidence 553 455 5577889999999998622 00 00 00
Q ss_pred Cc----hhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 241 YV----PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 241 ~~----~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+| +..++-+.++++.. ..++.|.+||||+. +.+.++..+|||.+.+|++++
T Consensus 154 ~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~-~~i~~l~~~Gad~~V~GS~if 211 (230)
T d1rpxa_ 154 GGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVF 211 (230)
T ss_dssp SSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTHHHHHHHTCCEEEESHHHH
T ss_pred ccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCH-HHHHHHHHcCCCEEEEChHHH
Confidence 12 33556666655443 23688999999987 678888899999999998865
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=0.00014 Score=63.59 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~ 211 (349)
..+.-...++.+.+.|++-|++-+|.. .+.+ .+-+. .++++.+++.. ..++.+|.
T Consensus 82 ~~e~K~~E~~~Ai~~GAdEID~Vin~~-------~l~~----------------g~~~~v~~ei~~v~~~~~~~~~~lKV 138 (250)
T d1p1xa_ 82 DIDIALAETRAAIAYGADEVDVVFPYR-------ALMA----------------GNEQVGFDLVKACKEACAAANVLLKV 138 (250)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCHH-------HHHT----------------TCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cHhHHHHHHHHHHHcCCCeEEEeecch-------hhcc----------------ccHHHHHHHHHHHHHhhccCCceEEE
Confidence 344555677788889999887655421 0110 12223 45677777654 34567788
Q ss_pred ec------CHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh--cCCCcEEEecCCCCHHHHHHHHH
Q 018919 212 VL------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT--QGRIPVFLDGGVRRGTDVFKALA 279 (349)
Q Consensus 212 v~------~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~--~~~ipvia~GGI~~~~dv~kal~ 279 (349)
+. +.+. .+.+.++|+|+|..|..-+ .....+.....+.++.+.. +.++.|=++||||+.+|+.+++.
T Consensus 139 IlEt~~Ltd~e~i~~a~~ia~~aGadFvKTSTG~~-~~gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~ 217 (250)
T d1p1xa_ 139 IIETGELKDEALIRKASEISIKAGADFIKTSTGKV-AVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLA 217 (250)
T ss_dssp ECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSCS-SCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHH
T ss_pred EEeccccCcHHHHHHHHHHHHHcCcCeEEecCCcC-CCCCCHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHHH
Confidence 72 2332 2557899999999875311 1112233444444433321 34799999999999999999999
Q ss_pred hCCCEE
Q 018919 280 LGASGI 285 (349)
Q Consensus 280 ~GA~~V 285 (349)
+||+.+
T Consensus 218 ~ga~~i 223 (250)
T d1p1xa_ 218 IADELF 223 (250)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998743
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.65 E-value=0.0012 Score=56.73 Aligned_cols=96 Identities=21% Similarity=0.185 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCcEEEEEe-----cCHHH----HHHHHHcCCCEEEEecCCC-C--------CCCCchhhHHHHHHHHH
Q 018919 193 DEDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGA-R--------QLDYVPATIMALEEVVK 254 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-----~~~~~----a~~a~~~G~d~I~v~~~gg-~--------~~~~~~~~~~~l~~i~~ 254 (349)
.++|+.+++..+ +.++|.+ ++.++ ++.+.++|+|+|..|..-+ . .....+.....+.++.+
T Consensus 101 ~~ei~~v~~~~~-~~~lKVIlEt~~L~~~ei~~~~~~~~~aGadFIKTSTGf~~~g~~~~~~~~~~at~~~~~~~~~~~~ 179 (226)
T d1vcva1 101 RRDLISVVGAAG-GRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIK 179 (226)
T ss_dssp HHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-CCeEEEEecccccCHHHHHHHHHHHHHcCcceeeecccccCCcccccccCcccCcHHHHHHHHHHHH
Confidence 455788887764 4457887 23333 4667889999999874311 0 01112334455666666
Q ss_pred HhcCCCcEEEecCCCCHHHHHHHHHh-------CCCEEEEch
Q 018919 255 ATQGRIPVFLDGGVRRGTDVFKALAL-------GASGIFIGR 289 (349)
Q Consensus 255 ~~~~~ipvia~GGI~~~~dv~kal~~-------GA~~V~ig~ 289 (349)
..++++-|=++||||+.+++.+++.+ ||+.++..+
T Consensus 180 ~~g~~vgiKasGGIrt~~~A~~~i~a~~~~~~~ga~RiGtSs 221 (226)
T d1vcva1 180 EKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTST 221 (226)
T ss_dssp HHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred HhCCceeEECcCCCCCHHHHHHHHHhhhcCCCCCCEEEecCC
Confidence 55668999999999999999999987 877765443
|
| >d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermus thermophilus [TaxId: 274]
Probab=97.62 E-value=0.00068 Score=57.75 Aligned_cols=139 Identities=19% Similarity=0.127 Sum_probs=94.7
Q ss_pred CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHH
Q 018919 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQT 201 (349)
Q Consensus 122 ~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~ 201 (349)
.++..+|+.. .+.+.+.+..+++...+-+ +.+-+.+.. +=.+.++.+++
T Consensus 60 ~~~is~ev~~-~~~e~m~~~a~~l~~~~~n-i~iKIP~t~-----------------------------~G~~a~~~L~~ 108 (211)
T d1wx0a1 60 GGPVSAEVTA-LEAEAMVAEGRRLAAIHPN-IVVKLPTTE-----------------------------EGLKACKRLSA 108 (211)
T ss_dssp TSCEEEECCC-SSHHHHHHHHHHHHHHCTT-EEEEEESSH-----------------------------HHHHHHHHHHH
T ss_pred cCCeEEEEee-CcHHHHHHHHHHHhhcCCc-eEEEeccch-----------------------------hhhHHHHHHhh
Confidence 3567788865 4555555555555554433 344443210 00355677766
Q ss_pred hcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHH
Q 018919 202 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKAL 278 (349)
Q Consensus 202 ~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal 278 (349)
. ++++-+-.+.+...+..|.++|+++|.. .-||-.+.|......+.++++.+ +.+..|++ ..+|+..++.+++
T Consensus 109 ~-Gi~vn~T~vfs~~Qa~~Aa~aga~yisp--yvgR~~d~g~d~~~~~~~~~~~~~~~~~~tkil~-AS~R~~~~~~~~~ 184 (211)
T d1wx0a1 109 E-GIKVNMTLIFSANQALLAARAGASYVSP--FLGRVDDISWDGGELLREIVEMIQVQDLPVKVIA-ASIRHPRHVTEAA 184 (211)
T ss_dssp T-TCCEEEEEECSHHHHHHHHHTTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEE-BCCCSHHHHHHHH
T ss_pred c-CCceeEEEecCHHHHHHHHHcCCCEEEE--eeecchhccccchhHHHHHHHHHHhccccceeEe-eecCCHHHHHHHH
Confidence 4 8999999999999999999999999876 33442233444455566665544 23566666 5599999999999
Q ss_pred HhCCCEEEEchHHHHHH
Q 018919 279 ALGASGIFIGRPVVYSL 295 (349)
Q Consensus 279 ~~GA~~V~ig~~~l~~~ 295 (349)
.+|||.|-+.-.++..+
T Consensus 185 ~~G~d~vTi~~~v~~~l 201 (211)
T d1wx0a1 185 LLGADIATMPHAVFKQL 201 (211)
T ss_dssp HTTCSEEEECHHHHHHH
T ss_pred HcCCCEEEeCHHHHHHH
Confidence 99999999998887654
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=97.61 E-value=0.00049 Score=58.73 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=101.6
Q ss_pred ChhhHHHHHHHHHcCCeEE-ecCCCCCC---HHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 87 PEGEYATARAASAAGTIMT-LSSWSTSS---VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~-~~~~~~~~---~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
++.-..+++++.+.|+..+ ++-.++.. ++.+++..|+. .+-.-.-.+ .+.++++.++|++.++ +|
T Consensus 28 ~~~a~~~~~al~~~Gi~~iEitl~~p~a~~~i~~l~~~~p~~-~vGaGTV~~----~~~~~~a~~aGa~Fiv----sP-- 96 (216)
T d1mxsa_ 28 EEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPEL-CVGAGTVLD----RSMFAAVEAAGAQFVV----TP-- 96 (216)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTS-EEEEECCCS----HHHHHHHHHHTCSSEE----CS--
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCc-ceeeeeeec----HHHHHHHHhCCCCEEE----CC--
Confidence 4444688899999998865 33223222 33444555532 222211123 3457788888988764 22
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY 241 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~ 241 (349)
.+ .+.+++.+ +.++|++ -++.|+.++..|.++|++.+.+.-.+- .+
T Consensus 97 ----------------------------~~~~~v~~~a~-~~~i~~i-PGv~TpsEi~~A~~~G~~~vKlFPA~~---~~ 143 (216)
T d1mxsa_ 97 ----------------------------GITEDILEAGV-DSEIPLL-PGISTPSEIMMGYALGYRRFKLFPAEI---SG 143 (216)
T ss_dssp ----------------------------SCCHHHHHHHH-HCSSCEE-CEECSHHHHHHHHTTTCCEEEETTHHH---HT
T ss_pred ----------------------------CCcHHHHHHHH-hcCCCcc-CCcCCHHHHHHHHHCCCCEEEeccccc---cc
Confidence 12 24455544 4688887 478999999999999999999963210 01
Q ss_pred chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 242 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 242 ~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
| ...+..+..-+ .+++++.+|||.. +++.++|++|+-++..|+.++
T Consensus 144 g---~~~ikal~~p~-p~~~fiptGGV~~-~n~~~yl~~~~v~avggs~l~ 189 (216)
T d1mxsa_ 144 G---VAAIKAFGGPF-GDIRFCPTGGVNP-ANVRNYMALPNVMCVGTTWML 189 (216)
T ss_dssp H---HHHHHHHHTTT-TTCEEEEBSSCCT-TTHHHHHHSTTBCCEEECTTS
T ss_pred c---HHHHHHHhccc-ccCceeccCCCCH-HHHHHHHhcCCeEEEEccccC
Confidence 2 34444444444 3799999999985 799999999988888787554
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=97.60 E-value=0.00096 Score=57.18 Aligned_cols=136 Identities=21% Similarity=0.231 Sum_probs=91.4
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEE
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVK 210 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK 210 (349)
..|.....+.++++++.|++.+-+++--- .| +| +-.+ .+.++++++.+++|+=+-
T Consensus 11 ~~d~~~l~~~i~~l~~~g~d~iHiDImDG-----------~F-vp------------n~t~~~~~~~~i~~~t~~~~dvH 66 (221)
T d1tqja_ 11 SADFSRLGEEIKAVDEAGADWIHVDVMDG-----------RF-VP------------NITIGPLIVDAIRPLTKKTLDVH 66 (221)
T ss_dssp GSCGGGHHHHHHHHHHTTCSEEEEEEEBS-----------SS-SS------------CBCBCHHHHHHHGGGCCSEEEEE
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEECccC-----------Cc-cC------------ccccCcHhHHhhhhccCcceeee
Confidence 35677788899999999999976655210 01 11 1123 467899988888887665
Q ss_pred Ee-cCH-HHHHHHHHcCCCEEEEecC--CC------------------------CC----------CC-----------C
Q 018919 211 GV-LTA-EDARIAVQAGAAGIIVSNH--GA------------------------RQ----------LD-----------Y 241 (349)
Q Consensus 211 ~v-~~~-~~a~~a~~~G~d~I~v~~~--gg------------------------~~----------~~-----------~ 241 (349)
.. .+| ..+....++|++.|++.-+ .. +. .| +
T Consensus 67 LMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~l~~~d~vlvM~V~pG~~ 146 (221)
T d1tqja_ 67 LMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFG 146 (221)
T ss_dssp EESSSGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC---
T ss_pred EEEeCHHHHHHHHhhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHHHhhhcEEEEEEecCCCC
Confidence 53 445 4467788999999988632 11 00 00 1
Q ss_pred c----hhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 242 V----PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 242 ~----~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
| +..++-+.++++.. +.++.|.+||||+. +.+.++..+|||.+.+|++++
T Consensus 147 GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~-~~i~~l~~~Gad~~V~GS~if 203 (221)
T d1tqja_ 147 GQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVF 203 (221)
T ss_dssp -CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHH
T ss_pred CcccchhhHHHHHHHHhhhhccccceEEEEECCcCH-HHHHHHHHcCCCEEEEChHHh
Confidence 1 34556666665544 23688999999987 577788889999999999865
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.34 E-value=0.00095 Score=58.32 Aligned_cols=75 Identities=27% Similarity=0.294 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|+|.+.+..-.+. .......+..+.++.+.+ .+|+.+.||||+.+|+.+++.+||+-|.+|+..+.
T Consensus 36 ~~a~~~~~~gadei~ivDl~~~-~~~~~~~~~~i~~i~~~~--~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~ 110 (252)
T d1h5ya_ 36 EMAVRYEEEGADEIAILDITAA-PEGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 110 (252)
T ss_dssp HHHHHHHHTTCSCEEEEECCCC-TTTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHHCCCCEEEEEecccc-ccccccHHHHHHHHHhhc--CCcceeecccchhhhhhhHhhcCCcEEEecccccC
Confidence 6788889999999987643221 223455678888888776 79999999999999999999999999999997653
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=97.33 E-value=0.00073 Score=59.07 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|+|.+.+..-.+ ...+.....+.+.++.+.. .+|+...|||++-+|+.+++.+||+-|.+|+..+.
T Consensus 34 ~~a~~~~~~g~dei~ivDld~-~~~~~~~~~~~i~~i~~~~--~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~ 108 (253)
T d1thfd_ 34 ELGKFYSEIGIDELVFLDITA-SVEKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp HHHHHHHHTTCCEEEEEESSC-SSSHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeecc-cccCcccHHHHHHHHHhcc--CccceeecccccchhhhhHHhcCCCEEEEChHHhh
Confidence 668888999999998864322 1223345567777777655 79999999999999999999999999999997764
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.31 E-value=0.00077 Score=55.34 Aligned_cols=89 Identities=12% Similarity=0.102 Sum_probs=65.4
Q ss_pred HHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 194 EDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 194 ~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+.++.+++..+ .+|.+ .+.+.++++.+.++|+|.|.+.|- .|..+...-+..+.....+.+-++||| +.+
T Consensus 68 ~~i~~~k~~~~~~~I~V-Ev~s~~q~~~a~~~~~diImLDN~-------sp~~~k~~v~~~~~~~~~i~lEaSGgI-~~~ 138 (169)
T d1qpoa1 68 DALRAVRNAAPDLPCEV-EVDSLEQLDAVLPEKPELILLDNF-------AVWQTQTAVQRRDSRAPTVMLESSGGL-SLQ 138 (169)
T ss_dssp HHHHHHHHHCTTSCEEE-EESSHHHHHHHGGGCCSEEEEETC-------CHHHHHHHHHHHHHHCTTCEEEEESSC-CTT
T ss_pred hhhhhhhhhcCCCceEE-EeccHHHhhhhhhcCCcEEEecCc-------ChHhHHHHHHHhhccCCeeEEEEeCCC-CHH
Confidence 34777777653 44554 578999999999999999999874 343333222233333456889999999 568
Q ss_pred HHHHHHHhCCCEEEEchHH
Q 018919 273 DVFKALALGASGIFIGRPV 291 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~ 291 (349)
.+.++...|+|.+.+|...
T Consensus 139 ni~~ya~~GvD~IS~galt 157 (169)
T d1qpoa1 139 TAATYAETGVDYLAVGALT 157 (169)
T ss_dssp THHHHHHTTCSEEECGGGT
T ss_pred HHHHHHHcCCCEEECCccc
Confidence 8989999999999999754
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=97.25 E-value=0.00099 Score=58.12 Aligned_cols=75 Identities=27% Similarity=0.305 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|+|.+.+..-.+. ........+.+.++.+.+ .+|+..+|||++.+|+.+++.+||+-|.+|+..+.
T Consensus 34 ~~a~~~~~~g~dei~iiDl~~~-~~~~~~~~~~i~~i~~~~--~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~ 108 (251)
T d1ka9f_ 34 EAARAYDEAGADELVFLDISAT-HEERAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 108 (251)
T ss_dssp HHHHHHHHHTCSCEEEEECCSS-TTCHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHHcCCCEEEEEecccc-cccchhHHHHHHHHHhcc--CcchheeccccCHHHHHHHHHcCCCEEEECchhhh
Confidence 6678888999999988643221 122344567777777765 79999999999999999999999999999997653
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.24 E-value=0.0016 Score=53.28 Aligned_cols=87 Identities=22% Similarity=0.255 Sum_probs=67.5
Q ss_pred HHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 194 EDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 194 ~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+.++.+++.. ..+|.+ .+.+.++++.+.++|+|.|.+.|- +.+.+.++.+.++.++.+-++|||. .+
T Consensus 68 ~~~~~~~~~~~~~~IeV-Ev~~~~~~~~a~~~g~diImLDN~----------~pe~~~~av~~i~~~~~lEaSGgI~-~~ 135 (167)
T d1qapa1 68 QAVEKAFWLHPDVPVEV-EVENLDELDDALKAGADIIMLDNF----------NTDQMREAVKRVNGQARLEVSGNVT-AE 135 (167)
T ss_dssp HHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEESSC----------CHHHHHHHHHTTCTTCCEEECCCSC-HH
T ss_pred hhhHHHhhcCCCceEEE-ecCcHHHHHHHHhcCCcEEEecCC----------CHHHHHHHHHhcCCceEEEEeCCCC-HH
Confidence 4466666554 345544 678999999999999999999764 2345566666676689999999986 48
Q ss_pred HHHHHHHhCCCEEEEchHHH
Q 018919 273 DVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l 292 (349)
.+.++...|+|.+.+|....
T Consensus 136 ni~~ya~~GVD~IS~galt~ 155 (167)
T d1qapa1 136 TLREFAETGVDFISVGALTK 155 (167)
T ss_dssp HHHHHHHTTCSEEECSHHHH
T ss_pred HHHHHHHcCCCEEECCcccC
Confidence 88888889999999998754
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.18 E-value=0.0027 Score=54.19 Aligned_cols=93 Identities=12% Similarity=0.158 Sum_probs=60.3
Q ss_pred HHHHHHHH-cCCCEEEEec-CCC-CCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 216 EDARIAVQ-AGAAGIIVSN-HGA-RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 216 ~~a~~a~~-~G~d~I~v~~-~gg-~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+.....++ .-+|.|.+-. +.| ..-...+..++-+.++++.. .++.|.+||||+. +.+.++..+|||.+.+||+++
T Consensus 125 ~~~~~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~-~~~~I~VDGGIn~-~~i~~l~~aGad~iV~GS~if 202 (221)
T d1tqxa_ 125 QKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY-KNLNIQVDGGLNI-ETTEISASHGANIIVAGTSIF 202 (221)
T ss_dssp GGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-TTCEEEEESSCCH-HHHHHHHHHTCCEEEESHHHH
T ss_pred ccchhhcccccccEEEEEeecccccccccCcchhHHHHHHHHhc-CCcceEEEcccCH-HhHHHHHHcCCCEEEEChHHH
Confidence 44445543 3577776532 222 11223455677777776653 4789999999976 678888899999999999865
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~el~~ 316 (349)
. .+...+.++.|++.+++
T Consensus 203 ~------~~d~~~~i~~Lr~~i~k 220 (221)
T d1tqxa_ 203 N------AEDPKYVIDTMRVSVQK 220 (221)
T ss_dssp T------CSSHHHHHHHHHHHHHH
T ss_pred C------CCCHHHHHHHHHHHHhh
Confidence 3 22344566666666553
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=97.11 E-value=0.0027 Score=55.39 Aligned_cols=126 Identities=15% Similarity=0.193 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHH---HHHHHHhcCCcEEEE
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DED---VKWLQTITKLPILVK 210 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~---i~~i~~~~~~pv~vK 210 (349)
.+.-...++.+.+.|++-|++-+|.. . +..+ +-+. .+. +..+++.. .+.++|
T Consensus 84 ~~~K~~Ea~~Ai~~GAdEID~Vin~~----~---l~~g----------------~~~~v~e~~~~i~~~~~~~-~~~~lK 139 (256)
T d2a4aa1 84 MEKVLNDTEKALDDGADEIDLVINYK----K---IIEN----------------TDEGLKEATKLTQSVKKLL-TNKILK 139 (256)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCHH----H---HHHS----------------HHHHHHHHHHHHHHHHTTC-TTSEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccHH----H---HhcC----------------cHHHHHHHHHHHHHHHhhc-cCCeeE
Confidence 34445567777889999887655431 0 0000 0001 122 34444332 244568
Q ss_pred Eec------CHHH---HH-HHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHH-------hcCCCcEEEecCCCCHHH
Q 018919 211 GVL------TAED---AR-IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA-------TQGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 211 ~v~------~~~~---a~-~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~-------~~~~ipvia~GGI~~~~d 273 (349)
.+. +.+. +. .+.++|+|+|..|..-+ .....+.....+.++.+. .++++.|=++||||+.++
T Consensus 140 VIlEt~~L~~~e~i~~~~~~~~~aGadFVKTSTG~~-~~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~ 218 (256)
T d2a4aa1 140 VIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKV-QINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNT 218 (256)
T ss_dssp EECCHHHHCSHHHHHHHHHHHHTTTCSEEECCCSCS-SCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHH
T ss_pred eeehhhhcCcHHHHHHHHHHHHhcccHHHHhccCCC-CCCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHH
Confidence 772 2333 32 34679999999874311 111223444444333321 135799999999999999
Q ss_pred HHHHHHhCCCEE
Q 018919 274 VFKALALGASGI 285 (349)
Q Consensus 274 v~kal~~GA~~V 285 (349)
+.+++.+|++.+
T Consensus 219 a~~~i~~g~~~l 230 (256)
T d2a4aa1 219 ASHYILLARRFL 230 (256)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999998853
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.90 E-value=0.001 Score=57.51 Aligned_cols=73 Identities=26% Similarity=0.290 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+.|+...+.|+|.+.+..-.+.. ........+.++.+.+ .+|+.+.|||++-+|+.+++..||+.|.+++..+
T Consensus 35 ~~a~~~~~~ga~~l~i~DLd~~~--~~~~~~~~i~~i~~~~--~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~ 107 (239)
T d1vzwa1 35 EAALAWQRSGAEWLHLVDLDAAF--GTGDNRALIAEVAQAM--DIKVELSGGIRDDDTLAAALATGCTRVNLGTAAL 107 (239)
T ss_dssp HHHHHHHHTTCSEEEEEEHHHHH--TSCCCHHHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHHcCCCEEEEEeecccc--cccchHHHHHHHHhhc--CcceEeecccccchhhhhhhccccccchhhHHhh
Confidence 66888889999999986422111 1223567778887776 7999999999999999999999999999999764
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.84 E-value=0.0015 Score=53.51 Aligned_cols=89 Identities=25% Similarity=0.224 Sum_probs=65.3
Q ss_pred HHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 194 EDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 194 ~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
+.++.+++..+ .+|.+ .+.+.+++..++++|+|.|.+.|- .|..+..+.+..+..+.++.+-++|||.-
T Consensus 66 ~~~~~~~~~~~~~~~I~V-Ev~~~~e~~~a~~~g~d~i~LDn~-------~pe~~k~~~~~lk~~~~~i~lEaSGGI~~- 136 (170)
T d1o4ua1 66 RAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDNL-------SPEEVKDISRRIKDINPNVIVEVSGGITE- 136 (170)
T ss_dssp HHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC-------CHHHHHHHHHHHHHHCTTSEEEEEECCCT-
T ss_pred HHHHHHHhhCCCCceEEE-EeCcHHHHHHHHhcCccEEEEcCc-------ChhhHhHHHHHHHhhCCcEEEEEECCCCH-
Confidence 44777776543 45666 578999999999999999999763 34344333333344456799999999875
Q ss_pred HHHHHHHHhCCCEEEEchHH
Q 018919 272 TDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~ 291 (349)
+.+.++...|+|.+.+|.+.
T Consensus 137 ~ni~~~a~~GVD~Is~g~lt 156 (170)
T d1o4ua1 137 ENVSLYDFETVDVISSSRLT 156 (170)
T ss_dssp TTGGGGCCTTCCEEEEGGGT
T ss_pred HHHHHHHHcCCCEEEcCccc
Confidence 77777777999999999764
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.80 E-value=0.013 Score=50.57 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 193 DEDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.++++.+++.+++||+.|.. .++.+...+..+|||+|.+.-.- + ....+..+.+.+..+ .+.+++. |++.
T Consensus 92 ~~dl~~v~~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~---L--~~~~l~~l~~~a~~l--gl~~LvE--vh~~ 162 (247)
T d1a53a_ 92 YETLRKIASSVSIPILMKDFIVKESQIDDAYNLGADTVLLIVKI---L--TERELESLLEYARSY--GMEPLIE--INDE 162 (247)
T ss_dssp HHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGG---S--CHHHHHHHHHHHHTT--TCCCEEE--ECSH
T ss_pred hHHHHHHHhccccceeecccccChHHHHHHHHhhcchhhhhhhh---c--cHHHHHHHHHHHHHH--hhhHHhh--cCCH
Confidence 58899999999999999985 78999999999999999985321 1 122344444444444 5666655 7999
Q ss_pred HHHHHHHHhCCCEEEEch
Q 018919 272 TDVFKALALGASGIFIGR 289 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~ 289 (349)
+|+.+++.+||+.++|-.
T Consensus 163 ~El~~a~~~~a~iIGINn 180 (247)
T d1a53a_ 163 NDLDIALRIGARFIGINS 180 (247)
T ss_dssp HHHHHHHHTTCSEEEEES
T ss_pred HHHHHHHhCCCCeEeeec
Confidence 999999999999998864
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=96.79 E-value=0.031 Score=48.26 Aligned_cols=183 Identities=25% Similarity=0.277 Sum_probs=98.7
Q ss_pred cCcceeecccccccccCChh-h-HHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEee-----cCCh-hHHHHH
Q 018919 70 ISMPIMIAPTAMQKMAHPEG-E-YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYV-----YKDR-NVVAQL 141 (349)
Q Consensus 70 ~~~Pi~iApm~~~~l~~~~~-~-~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~-----~~~~-~~~~~~ 141 (349)
+++++...|+.+.. +++. + ..+.+.+...|...++.+-.. ++..... .....+-+-. ..+. ....--
T Consensus 21 ~DHg~~~gp~~gl~--~~~~~d~~~~~~~~~~~g~Da~~~~~G~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s 95 (251)
T d1ojxa_ 21 YDHGIEHGPADFMD--NPDSADPEYILRLARDAGFDGVVFQRGI--AEKYYDG-SVPLILKLNGKTTLYNGEPVSVANCS 95 (251)
T ss_dssp CCHHHHTCGGGGGS--SGGGGCHHHHHHHHHHHTCSEEEECHHH--HHHHCCS-SSCEEEECEECCTTCCSSCCCEESSC
T ss_pred cCCCcccCCccccc--CccccCHHHHHHHHHhcCCChhhcchHH--HHHhccc-ccCeeEEEecCcccccccchhhhccC
Confidence 34455555654422 3321 1 357777888888777643221 1222111 1111121111 0111 111123
Q ss_pred HHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH---HHhcCCcEEEEEec-----
Q 018919 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL---QTITKLPILVKGVL----- 213 (349)
Q Consensus 142 ~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i---~~~~~~pv~vK~v~----- 213 (349)
++.+.+.|++++.+++..-.. . +.+..+.+.++ .+++++|+++=...
T Consensus 96 ve~a~rlGadaV~~~v~~g~~-~------------------------e~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~ 150 (251)
T d1ojxa_ 96 VEEAVSLGASAVGYTIYPGSG-F------------------------EWKMFEELARIKRDAVKFDLPLVVWSYPRGGKV 150 (251)
T ss_dssp HHHHHHTTCSEEEEEECTTST-T------------------------HHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTC
T ss_pred HHHHHhchhceEEEEEeCCCC-c------------------------hHHHHHHHHHHHHHHHHcCCeEEEEEeecCCcc
Confidence 567788999999887753100 0 01113333333 34469998875541
Q ss_pred ----CHH----HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCC--CHHHHHH----HHH
Q 018919 214 ----TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR--RGTDVFK----ALA 279 (349)
Q Consensus 214 ----~~~----~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~--~~~dv~k----al~ 279 (349)
+++ -++.+.+.|+|.|.+--. ...+...++.+.. ..+||+..||-. +.+++++ ++.
T Consensus 151 ~~~~~~~~v~~aaria~ElGaDivK~~~p---------~~~~~~~~~v~~a-~~~pv~~~gG~~~~~~~~~l~~~~~a~~ 220 (251)
T d1ojxa_ 151 VNETAPEIVAYAARIALELGADAMKIKYT---------GDPKTFSWAVKVA-GKVPVLMSGGPKTKTEEDFLKQVEGVLE 220 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHTCSEEEECCC---------SSHHHHHHHHHHT-TTSCEEEECCSCCSSHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCEEEecCC---------CcHHHHHHHHHhc-CCCceEEeCCCCCCCHHHHHHHHHHHHH
Confidence 232 368889999999998321 1233444444332 268888888865 4666654 566
Q ss_pred hCCCEEEEchHHH
Q 018919 280 LGASGIFIGRPVV 292 (349)
Q Consensus 280 ~GA~~V~ig~~~l 292 (349)
.||.++.+||.+.
T Consensus 221 ~Ga~G~~~GRni~ 233 (251)
T d1ojxa_ 221 AGALGIAVGRNVW 233 (251)
T ss_dssp TTCCEEEESHHHH
T ss_pred CCCcEEeechhhh
Confidence 8999999999875
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=96.65 E-value=0.0053 Score=51.62 Aligned_cols=87 Identities=22% Similarity=0.142 Sum_probs=62.7
Q ss_pred CCchHHHHHHHHHhc--CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 189 LGKMDEDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 189 ~~~~~~~i~~i~~~~--~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
++...+.++.+++.. ++-|.+..+.+.++++.+.++|+++++- - +. +.+.+....+. ++|++ -
T Consensus 44 ~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fivs-P--~~-------~~~v~~~~~~~---~i~~i--P 108 (202)
T d1wa3a1 44 VPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVS-P--HL-------DEEISQFCKEK---GVFYM--P 108 (202)
T ss_dssp STTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEEC-S--SC-------CHHHHHHHHHH---TCEEE--C
T ss_pred CccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEeC-C--CC-------cHHHHHHHHhc---CCcee--C
Confidence 343367788887543 4667777889999999999999999952 1 11 12333333332 56666 7
Q ss_pred CCCCHHHHHHHHHhCCCEEEEchH
Q 018919 267 GVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 267 GI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
|+.|++++.+|+.+||+.+-+--+
T Consensus 109 Gv~TpsEi~~A~~~G~~~lK~fPa 132 (202)
T d1wa3a1 109 GVMTPTELVKAMKLGHTILKLFPG 132 (202)
T ss_dssp EECSHHHHHHHHHTTCCEEEETTH
T ss_pred CcCcHHHHHHHHHCCCCEEEecch
Confidence 899999999999999999987543
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.64 E-value=0.025 Score=47.19 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=51.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~-~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.+.+.+++..+++.... ..+.+..+++.++.++.++. .||+. +.+..+++..|||.+.+||+++.+
T Consensus 125 ~~~a~~~~~~g~~~~~~----------~~~~~~~~r~~~~~~~~i~~-pGI~~~~~~~~~ai~~Gad~iVvGR~I~~a-- 191 (206)
T d2czda1 125 IEVANEIEPFGVIAPGT----------RPERIGYIRDRLKEGIKILA-PGIGAQGGKAKDAVKAGADYIIVGRAIYNA-- 191 (206)
T ss_dssp HHHHHHHCCSEEECCCS----------STHHHHHHHHHSCTTCEEEE-CCCCSSTTHHHHHHHHTCSEEEECHHHHTS--
T ss_pred HHHHHhccccccccccc----------CchhhhhhhhhhcccceEEC-CCccccCCCHHHHHHhCCCEEEEChhhccC--
Confidence 45566778888765321 12345556666654565555 45543 457778899999999999999742
Q ss_pred hcCHHHHHHHHHHHHHHHH
Q 018919 297 AEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 297 ~~G~~gv~~~l~~l~~el~ 315 (349)
+...+.++.+++||+
T Consensus 192 ----~dP~~aa~~i~~~ik 206 (206)
T d2czda1 192 ----PNPREAAKAIYDEIR 206 (206)
T ss_dssp ----SSHHHHHHHHHHHHC
T ss_pred ----CCHHHHHHHHHHHhC
Confidence 223456677777763
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.57 E-value=0.012 Score=50.83 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=68.1
Q ss_pred hHHHHHHHHHcCCeEEe-cCCCCCCHHH---HHhhCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEE-EecCCCCC
Q 018919 90 EYATARAASAAGTIMTL-SSWSTSSVEE---VASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA-LTVDTPRL 162 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~-~~~~~~~~e~---i~~~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~-i~~d~p~~ 162 (349)
...+.+.|++.|+.+.+ ... ++|| +.+... +.-.++|..+..++ +.++++.+..-..+- +.... ..
T Consensus 97 ~~~f~~~~~~~Gv~GliipDL---P~eE~~~~~~~~~~~gl~~I~lvaPtt~~---~ri~~i~~~s~gFiY~vs~~G-vT 169 (248)
T d1geqa_ 97 VRNFLAEAKASGVDGILVVDL---PVFHAKEFTEIAREEGIKTVFLAAPNTPD---ERLKVIDDMTTGFVYLVSLYG-TT 169 (248)
T ss_dssp HHHHHHHHHHHTCCEEEETTC---CGGGHHHHHHHHHHHTCEEEEEECTTCCH---HHHHHHHHHCSSEEEEECCC----
T ss_pred HHHHhhhhcccCeeEEeccCC---cHHHHHHHHhhccccCcceEEEecccchh---HHHHHHHhcCCCeEEEEeccc-cc
Confidence 45788889999987765 222 3343 322211 45566666554443 344444433222222 11111 11
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
|.|. ..+.. .+.++++|+.+++|+.+.. +.++|+++.+.+.|||+++|.
T Consensus 170 G~~~---------------------~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVG 220 (248)
T d1geqa_ 170 GARE---------------------EIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp -------------------------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred ccch---------------------hhhhhHHHHHHHHhhhcccceeeecccCCHHHHHHHHhcCCCEEEEC
Confidence 1110 11222 5679999999999999975 689999999999999999994
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=96.52 E-value=0.0096 Score=50.80 Aligned_cols=40 Identities=25% Similarity=0.572 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCcEEEE-EecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
...|+.+++..++||++- ++-++.+|..+.|.|+|+|.+-
T Consensus 166 ~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AMElG~daVLvN 206 (251)
T d1xm3a_ 166 PLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLN 206 (251)
T ss_dssp HHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred hHHHHHHHhcCCccEEEecCCCCHHHHHHHHHccCCEEEec
Confidence 367888888899999875 3678999999999999999873
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=96.47 E-value=0.0072 Score=51.72 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 247 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 247 ~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.+..+++.+ .++||++.+||++++++.++ +.|||+|.+|+++..
T Consensus 170 ~~~~~v~~~~-~~~Pl~VGFGIst~e~a~~v-~~~ADgVVVGSAiv~ 214 (229)
T d1viza_ 170 EAVKKTKAVL-ETSTLFYGGGIKDAETAKQY-AEHADVIVVGNAVYE 214 (229)
T ss_dssp HHHHHHHHTC-SSSEEEEESSCCSHHHHHHH-HTTCSEEEECTHHHH
T ss_pred hhHHHHHhhc-cCcceEEEcccCCHHHHHHH-HcCCCEEEECHHHHh
Confidence 4445555544 47999999999999999664 579999999999864
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=96.44 E-value=0.0021 Score=58.05 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCC--CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH-----------HHHHHHhC
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-----------VFKALALG 281 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d-----------v~kal~~G 281 (349)
.+.|+.-.+.|||-|.+-.-.+.. .....+.++.+.++++.+ .+||.+.|||++-+| +.+.+.+|
T Consensus 51 ~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~--~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~G 128 (323)
T d1jvna1 51 VQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSG 128 (323)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc--ceeEEEecCcccHHHhhhccchhhHHHHHHHHcC
Confidence 377888999999999874321110 011123467777776655 799999999999765 57889999
Q ss_pred CCEEEEchHHHH
Q 018919 282 ASGIFIGRPVVY 293 (349)
Q Consensus 282 A~~V~ig~~~l~ 293 (349)
||-|.|||+.+.
T Consensus 129 adKVvI~T~ai~ 140 (323)
T d1jvna1 129 ADKVSIGTDAVY 140 (323)
T ss_dssp CSEEEECHHHHH
T ss_pred CCeEEechHHhh
Confidence 999999998764
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=96.23 E-value=0.01 Score=52.00 Aligned_cols=41 Identities=29% Similarity=0.335 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++++|+.+++|+.+.. +.++|++..+.+.|+|+++|..
T Consensus 194 ~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGS 235 (267)
T d1qopa_ 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (267)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHhhhccCCceeecccCCHHHHHHHHhcCCCEEEECH
Confidence 5779999999999999875 6899999999999999999953
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=96.17 E-value=0.34 Score=41.85 Aligned_cols=182 Identities=18% Similarity=0.219 Sum_probs=107.4
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEec-----CCCCCCHHHHH-------hh-CC-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-----SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-----~~~~~~~e~i~-------~~-~~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-..-.+.++-...++-..+.|+.+++- ++...+.+|.. +. .+ .+.+++... .+...
T Consensus 8 ~~a~~TPf~~d~~iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~s~~~ 86 (292)
T d1xkya1 8 ATAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGS-NNTHA 86 (292)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHH
T ss_pred eeeeeCCcCCCcCcCHHHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCc-ccHHH
Confidence 366677765433334455567777788888865542 22345666632 22 22 356666543 45566
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
+.++++.++++|++++.+.. |.. . + ..+....+..+.+.+.+++|+++=..
T Consensus 87 ~i~~a~~a~~~Gad~ilv~p--P~~-----------~-~----------~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~ 142 (292)
T d1xkya1 87 SIDLTKKATEVGVDAVMLVA--PYY-----------N-K----------PSQEGMYQHFKAIAESTPLPVMLYNVPGRSI 142 (292)
T ss_dssp HHHHHHHHHHTTCSEEEEEC--CCS-----------S-C----------CCHHHHHHHHHHHHHTCSSCEEEEECHHHHS
T ss_pred HHHHHHHHHHcCCCEEEECC--CCC-----------C-C----------CCHHHHHHHHHHHhccCCCcEEEEeCCcccC
Confidence 77889999999999988643 210 0 0 00112256678888888999998553
Q ss_pred --cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 --LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 --~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+++...++.+.. +-+|.-+ + .+.....++.+..+.+..++. |+ .......+.+|+++++.|.
T Consensus 143 ~~~~~~~~~~l~~~p~v~giK~~--~--------~~~~~~~~~~~~~~~~~~v~~-G~---~~~~~~~~~~G~~G~~~~~ 208 (292)
T d1xkya1 143 VQISVDTVVRLSEIENIVAIKDA--G--------GDVLTMTEIIEKTADDFAVYS-GD---DGLTLPAMAVGAKGIVSVA 208 (292)
T ss_dssp SCCCHHHHHHHHTSTTEEEEEEC--S--------SCHHHHHHHHHHSCTTCEEEE-SS---GGGHHHHHHTTCCEEEEST
T ss_pred CccCHHHHhhhccCCCEEEEecc--c--------cchhhhheeeeecCCCCEEEE-CC---ccccchHHHcCCCccccch
Confidence 4567666665531 2222211 1 123344455555544565553 33 2456678889999999998
Q ss_pred HHH
Q 018919 290 PVV 292 (349)
Q Consensus 290 ~~l 292 (349)
..+
T Consensus 209 ~n~ 211 (292)
T d1xkya1 209 SHV 211 (292)
T ss_dssp HHH
T ss_pred hhH
Confidence 744
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.11 E-value=0.0038 Score=53.51 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 246 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 246 ~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.+..+++.+ .++||+..+||++++++.++. .+||+|.||++|..
T Consensus 175 ~~~~~~~~k~~-~~~Pv~VGFGI~s~e~a~~~~-~~ADgvIVGSaive 220 (231)
T d2f6ua1 175 PELVAEVKKVL-DKARLFYGGGIDSREKAREML-RYADTIIVGNVIYE 220 (231)
T ss_dssp HHHHHHHHHHC-SSSEEEEESCCCSHHHHHHHH-HHSSEEEECHHHHH
T ss_pred hhHHHHHHHhc-CCCCEEEEeCcCCHHHHHHHH-hcCCEEEEChHHhc
Confidence 34555555555 379999999999999997765 58999999999864
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=96.03 E-value=0.023 Score=48.94 Aligned_cols=124 Identities=14% Similarity=0.181 Sum_probs=79.4
Q ss_pred eecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcE
Q 018919 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPI 207 (349)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv 207 (349)
|...+.+.+.+-++.+.+.|++++++.+=.+ |... .+.++++.+.. +.|+
T Consensus 66 Ys~~E~~~M~~di~~~k~~G~dGvV~G~L~~----------------------------dg~iD~~~~~~L~~~a~~l~v 117 (247)
T d1twda_ 66 YSDGEFAAILEDVRTVRELGFPGLVTGVLDV----------------------------DGNVDMPRMEKIMAAAGPLAV 117 (247)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCT----------------------------TSSBCHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeEEEEEECC----------------------------CCCccHHHHHHHHHHhcccCe
Confidence 4433445677888899999999998644211 1222 46677776665 6776
Q ss_pred EEEEe----cCH-HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 208 LVKGV----LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 208 ~vK~v----~~~-~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
..--. .++ +..+.+.+.|++.|-.|+...+ ....++.|.++.+... ..-|++.|||+. +.+.+.+..|+
T Consensus 118 TFHRAfD~~~d~~~al~~Li~lG~~rILTSGg~~~----a~~G~~~L~~L~~~a~-~~iIm~GgGI~~-~Ni~~l~~~g~ 191 (247)
T d1twda_ 118 TFHRAFDMCANPLYTLNNLAELGIARVLTSGQKSD----ALQGLSKIMELIAHRD-APIIMAGAGVRA-ENLHHFLDAGV 191 (247)
T ss_dssp EECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSSS----TTTTHHHHHHHHTSSS-CCEEEEESSCCT-TTHHHHHHHTC
T ss_pred eeehhhhhhCCHHHHHHHHHhcCCCeEeccCCCCc----hhHHHHHHHHHHHhcC-CcEEEecCCCCH-HHHHHHHHcCC
Confidence 55432 344 4567889999999987653222 2223555666655433 344999999876 56767777898
Q ss_pred CEEEE
Q 018919 283 SGIFI 287 (349)
Q Consensus 283 ~~V~i 287 (349)
+.+=.
T Consensus 192 ~e~H~ 196 (247)
T d1twda_ 192 LEVHS 196 (247)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87764
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.98 E-value=0.076 Score=44.30 Aligned_cols=118 Identities=16% Similarity=0.078 Sum_probs=82.0
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV 212 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v 212 (349)
.+++.+.+.++.+.+.|+.++.++. .+.++++|+..+.|+....-
T Consensus 30 ~~~~~v~~~A~a~~~~Ga~~i~~~~-----------------------------------~~~~~~ir~~~~~~~~~~~~ 74 (230)
T d1yxya1 30 ETGGIMPLMAKAAQEAGAVGIRANS-----------------------------------VRDIKEIQAITDLPIIGIIK 74 (230)
T ss_dssp TTCCSHHHHHHHHHHHTCSEEEEES-----------------------------------HHHHHHHHTTCCSCEEEECB
T ss_pred CChHHHHHHHHHHHHCCCeEEEecC-----------------------------------hhhHHHHHhhhhcchhhhhc
Confidence 4667778888889999999986532 25677788878888654321
Q ss_pred -----------cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC
Q 018919 213 -----------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 213 -----------~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G 281 (349)
...+....+..+|+|.+.+...-+.. ......++.+..+.... .. ++..+++.|.+++.++.++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~-~~v~~~v~t~~~a~~a~~~G 150 (230)
T d1yxya1 75 KDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDR-HDGLDIASFIRQVKEKY--PN-QLLMADISTFDEGLVAHQAG 150 (230)
T ss_dssp CCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCC-TTCCCHHHHHHHHHHHC--TT-CEEEEECSSHHHHHHHHHTT
T ss_pred ccCCcceeeechhHHHHHHHHhcCCCEEEEecccccc-cchhhHHHHHHHHHhcC--CC-ceEecCCCCHHHHHHHHhcC
Confidence 34578899999999999887532211 11223455565555543 22 34445799999999999999
Q ss_pred CCEEEEch
Q 018919 282 ASGIFIGR 289 (349)
Q Consensus 282 A~~V~ig~ 289 (349)
||.+.++.
T Consensus 151 ad~i~~~~ 158 (230)
T d1yxya1 151 IDFVGTTL 158 (230)
T ss_dssp CSEEECTT
T ss_pred CCEEEeec
Confidence 99998765
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=95.93 E-value=0.48 Score=41.59 Aligned_cols=110 Identities=26% Similarity=0.324 Sum_probs=74.2
Q ss_pred cCHHHHHH-HHHcCCCEEEEec---CCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCC-------------------
Q 018919 213 LTAEDARI-AVQAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGV------------------- 268 (349)
Q Consensus 213 ~~~~~a~~-a~~~G~d~I~v~~---~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI------------------- 268 (349)
.+|++|+. +.+.|+|.+-++. ||-+.....| -.++.|.+|.+.+ ++|+..-||=
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~--~~PLVlHGgS~vp~~~~~~~~~~g~~lhg 230 (305)
T d1rvga_ 153 TNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV--PAPLVLHGASAVPPELVERFRASGGEIGE 230 (305)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC--CSCEEECSCCCCCHHHHHHHHHTTCCCCS
T ss_pred CCHHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhcc--CCCeeccCCccccHHHHhhhcccCcccCC
Confidence 36788888 4569999999874 4543211111 3578899999887 7999988853
Q ss_pred ---CCHHHHHHHHHhCCCEEEEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 269 ---RRGTDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 269 ---~~~~dv~kal~~GA~~V~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
...+|+.+++..|..-|=++|-+..+... .. ..-.....+.+++-++..|+.+|..
T Consensus 231 ~sG~~~e~i~~ai~~GV~KiNi~T~l~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~fgS~ 302 (305)
T d1rvga_ 231 AAGIHPEDIKKAISLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302 (305)
T ss_dssp CBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHcCeEEEEeChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 23588999999999999999976543211 11 1123344556666777777777754
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.46 Score=41.27 Aligned_cols=107 Identities=18% Similarity=0.295 Sum_probs=72.6
Q ss_pred cCHHHHHHH-HHcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCHHH-HHHHHHhCCCEE
Q 018919 213 LTAEDARIA-VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTD-VFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a-~~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~d-v~kal~~GA~~V 285 (349)
.+|++|+.- .+.|+|.+-++. ||-. .+.+ .++.|.++.+.+ ++|++.=||=..++| +.+++..|..-|
T Consensus 154 T~peea~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~l~~~~L~~i~~~~--~vPLVlHGgSG~~~e~i~~ai~~Gi~Ki 228 (284)
T d1gvfa_ 154 TDPQEAKRFVELTGVDSLAVAIGTAHGLY---SKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKV 228 (284)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSCC---SSCCCCCHHHHHHHHHHC--CSCEEECCCTTCCHHHHHHHHHTTEEEE
T ss_pred CCHHHHHHHHHHhCCCEEeeecCceeecc---CCCCccccchhhhhhccc--cCCeEeeCCCCCCHHHHHHHHHcCeEEE
Confidence 467887764 479999999874 4432 3333 468899999888 789998887666655 556888999999
Q ss_pred EEchHHHHHHh-------hcCH------HHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLA-------AEGE------KGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~-------~~G~------~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=|+|.+-.+.. ...+ .-.....+.+++.++..|+.+|..
T Consensus 229 Ni~T~l~~a~~~~~~~~l~~n~~~~d~~~~~~~~~~a~~~~v~~~i~~fGs~ 280 (284)
T d1gvfa_ 229 NVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 280 (284)
T ss_dssp EECHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred EechHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99997754321 1111 123344556677777777777754
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.86 E-value=0.019 Score=49.15 Aligned_cols=68 Identities=25% Similarity=0.334 Sum_probs=48.6
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEE-EecCHHHHH
Q 018919 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVK-GVLTAEDAR 219 (349)
Q Consensus 141 ~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~v~~~~~a~ 219 (349)
.++++++.|+.++. .+..|... +.+ ..+ ...++.+++..++|+++- ++-++.||.
T Consensus 140 ~ak~le~~Gc~~vM-plgsPIGs--------------g~G------i~n---~~~l~~i~~~~~vpvivdAGIg~psdaa 195 (243)
T d1wv2a_ 140 IARQLAEIGCIAVM-PLAGLIGS--------------GLG------ICN---PYNLRIILEEAKVPVLVDAGVGTASDAA 195 (243)
T ss_dssp HHHHHHHSCCSEEE-ECSSSTTC--------------CCC------CSC---HHHHHHHHHHCSSCBEEESCCCSHHHHH
T ss_pred HHhHHHHcCceeee-eccccccc--------------ccc------ccc---HHHHHhccccCCcceEeecccCCHHHHH
Confidence 56788899988764 45555321 111 122 345777788889998875 368999999
Q ss_pred HHHHcCCCEEEEe
Q 018919 220 IAVQAGAAGIIVS 232 (349)
Q Consensus 220 ~a~~~G~d~I~v~ 232 (349)
.+.|.|+|+|-+.
T Consensus 196 ~AMElG~dgVLvn 208 (243)
T d1wv2a_ 196 IAMELGCEAVLMN 208 (243)
T ss_dssp HHHHHTCSEEEES
T ss_pred HHHHccCCEEEec
Confidence 9999999999873
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=95.84 E-value=0.13 Score=42.35 Aligned_cols=115 Identities=12% Similarity=0.043 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE--
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-- 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-- 211 (349)
+++.+.++++.+...|+.++.++. .+.++++++..+.|+....
T Consensus 21 ~~~~~a~~A~aa~~~Ga~~i~~~~-----------------------------------~~~~~~i~~~~~~~~~~~~~~ 65 (222)
T d1y0ea_ 21 SSFIMSKMALAAYEGGAVGIRANT-----------------------------------KEDILAIKETVDLPVIGIVKR 65 (222)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEES-----------------------------------HHHHHHHHHHCCSCEEEECBC
T ss_pred CcHHHHHHHHHHHHCCCeEEecCC-----------------------------------HHHHHHHHHhcCCccceeecc
Confidence 556777888888888988875421 2457777777777765321
Q ss_pred e---------cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 212 V---------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 212 v---------~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
. ...+..+.+.++|+|.|.+...-. ........+.+..+.+. ...++..+++.+..+..++.+.|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~agad~v~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~v~~~~~t~~~a~~~~~~g~ 140 (222)
T d1y0ea_ 66 DYDHSDVFITATSKEVDELIESQCEVIALDATLQ--QRPKETLDELVSYIRTH---APNVEIMADIATVEEAKNAARLGF 140 (222)
T ss_dssp CCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCS--CCSSSCHHHHHHHHHHH---CTTSEEEEECSSHHHHHHHHHTTC
T ss_pred CCcchHHhhcccHHHHHhHHHcCCCEEEeecccc--ccccchHHHHHHHHHHh---CCceEEeecCCCHHHHHHHHHcCC
Confidence 1 346788899999999998854211 01112223344444433 334456677999999999999999
Q ss_pred CEEEEc
Q 018919 283 SGIFIG 288 (349)
Q Consensus 283 ~~V~ig 288 (349)
|.+.++
T Consensus 141 d~i~~~ 146 (222)
T d1y0ea_ 141 DYIGTT 146 (222)
T ss_dssp SEEECT
T ss_pred CeEEEe
Confidence 999875
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.50 E-value=0.027 Score=49.59 Aligned_cols=91 Identities=21% Similarity=0.312 Sum_probs=60.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|++++.+.++.|-...-.. -..+.+..+.+.+++++||++.-|=.+.+++++ |..+|||++++..|++
T Consensus 34 i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~~P~~ 113 (296)
T d1xxxa1 34 ANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYY 113 (296)
T ss_dssp HHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 45678899999999765442211111 123455555666777899998887778777765 4458999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLR 311 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~ 311 (349)
+. .+.+++.++++.+.
T Consensus 114 ~~---~~~~~l~~~~~~v~ 129 (296)
T d1xxxa1 114 SK---PPQRGLQAHFTAVA 129 (296)
T ss_dssp SC---CCHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHH
Confidence 63 24555555544443
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=95.49 E-value=0.2 Score=43.76 Aligned_cols=94 Identities=22% Similarity=0.197 Sum_probs=56.8
Q ss_pred HHHHHHhcCCcEEEEEec---------C-H----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCc
Q 018919 196 VKWLQTITKLPILVKGVL---------T-A----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 261 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~v~---------~-~----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 261 (349)
+.+.++.+++|+++=.+. + + +-++.+.+.|+|.+.+--.|.. ............++.+.. .+|
T Consensus 145 l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~K~~~p~~~-~~~~~~~~~~~~~~~~~~--~~p 221 (291)
T d1to3a_ 145 FNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYG-KGARSDLLTASQRLNGHI--NMP 221 (291)
T ss_dssp HHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGG-CSCHHHHHHHHHHHHHTC--CSC
T ss_pred HHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEEEEecCCCc-hhhhHHHHHHHHHHhhcC--CCc
Confidence 333345679998876541 1 2 2367788999999988421110 001112233344444443 678
Q ss_pred -EEEecCCCCHHHHHH----HHHhCCCEEEEchHHHH
Q 018919 262 -VFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 293 (349)
Q Consensus 262 -via~GGI~~~~dv~k----al~~GA~~V~ig~~~l~ 293 (349)
|+.+||. +.+++.+ |+..||.++.+||.+.+
T Consensus 222 ~vvLs~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~ 257 (291)
T d1to3a_ 222 WVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWS 257 (291)
T ss_dssp EEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHG
T ss_pred EEEEeCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhh
Confidence 7777886 4566665 44589999999998764
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.49 E-value=0.035 Score=50.59 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+.+..+.++|+|.|+++...|. .....+.+.++++.. .+++|| .|.|.|++.+.+++..|||+|-+|-
T Consensus 109 ~er~~~l~~agvd~ivID~A~G~----s~~~~~~i~~ik~~~-~~~~iI-aGNV~T~e~a~~L~~aGaD~VkVGi 177 (365)
T d1zfja1 109 FERAEALFEAGADAIVIDTAHGH----SAGVLRKIAEIRAHF-PNRTLI-AGNIATAEGARALYDAGVDVVKVGI 177 (365)
T ss_dssp HHHHHHHHHHTCSEEEECCSCTT----CHHHHHHHHHHHHHC-SSSCEE-EEEECSHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHcCCCEEEEECCccc----ccchhHHHHHHHhhC-CCccee-ecccccHHHHHHHHhcCCceEEeee
Confidence 36688899999999999754332 123356677776665 367776 6889999999999999999998883
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.45 E-value=0.16 Score=42.09 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=42.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHhCCCEEEEchHHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~kal~~GA~~V~ig~~~l~ 293 (349)
++.+.++|+++++... ...+.+..+++.++ +-.++.++||+.-. +...++ .|||.+.+||+++.
T Consensus 133 ~~~~~~~g~~g~v~~~----------~~~~~i~~ir~~~~-~~~~~vtpGI~~~g~~~~d~~-~~ad~iIvGR~I~~ 197 (212)
T d1km4a_ 133 ARMGVDLGVKNYVGPS----------TRPERLSRLREIIG-QDSFLISPGVGAQGGDPGETL-RFADAIIVGRSIYL 197 (212)
T ss_dssp HHHHHHHTCCEEECCT----------TCHHHHHHHHHHHC-SSSEEEECCBSTTSBCHHHHT-TTCSEEEECHHHHT
T ss_pred HHHHHHhCCccccccc----------cCHHHHhhhhhccC-CceeEEcCccccCCCCHHHHH-hhCCEEEECchhcc
Confidence 5667889999886521 12345566666654 34567899997432 332233 58999999999984
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=95.45 E-value=0.66 Score=39.70 Aligned_cols=133 Identities=21% Similarity=0.182 Sum_probs=82.3
Q ss_pred hHHHHHHHHHcCCeEEecCC------------CCCCHHHH-------HhhCCCce-EEEE-ee--cCChhHHHHHHHHHH
Q 018919 90 EYATARAASAAGTIMTLSSW------------STSSVEEV-------ASTGPGIR-FFQL-YV--YKDRNVVAQLVRRAE 146 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~------------~~~~~e~i-------~~~~~~~~-~~Ql-~~--~~~~~~~~~~~~~~~ 146 (349)
+..+|+++.++|+.+++-.- .+.+++++ ++..+..+ ..-+ |. ....+...+..+++.
T Consensus 24 d~~~A~~ae~agiDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy~~~~~~~~~a~~~~~ 103 (260)
T d1o66a_ 24 ESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELM 103 (260)
T ss_dssp SHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhhcchhHHHHHHHHHHH
Confidence 45899999999999886311 12456664 33334332 2222 11 134455556667777
Q ss_pred HcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecC------------
Q 018919 147 RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLT------------ 214 (349)
Q Consensus 147 ~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~------------ 214 (349)
++|++++-+--+. ...+.++.+.+. ++||+--.-++
T Consensus 104 ~~gadavk~eg~~-------------------------------~~~~~i~~l~~~-gIPV~gHiGl~Pq~~~~~gG~r~ 151 (260)
T d1o66a_ 104 AAGAHMVKLEGGV-------------------------------WMAETTEFLQMR-GIPVCAHIGLTPQSVFAFGGYKV 151 (260)
T ss_dssp HTTCSEEEEECSG-------------------------------GGHHHHHHHHHT-TCCEEEEEESCGGGTTC------
T ss_pred Hhhhhhccccchh-------------------------------hhhHHHHHHHHc-CCeeEeecccccchheecCccee
Confidence 8999997654321 113567777663 78876544211
Q ss_pred ----------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 215 ----------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 215 ----------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
.++|+.+.++||-+|++-.- +.++-.+|.+.+ ++|+|.-|
T Consensus 152 ~Gk~~e~~~l~~~a~~le~AGa~~ivlE~V----------p~~va~~It~~~--~iptIgIG 201 (260)
T d1o66a_ 152 QGRGGKAQALLNDAKAHDDAGAAVVLMECV----------LAELAKKVTETV--SCPTIGIG 201 (260)
T ss_dssp -----CHHHHHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHC--SSCEEEES
T ss_pred ccccchhHHHHHHHHHHHHhhhhehhhhhc----------cHHHHHHHHhhh--cceeeecc
Confidence 26788999999999998532 234556677777 89999665
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=95.44 E-value=0.011 Score=50.67 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|+|.+.+-.-.+. ..+.+.....+..+.+ . .+|+...|||++.+|+.+.+..||+-|.+++.++.
T Consensus 34 ~~a~~~~~~g~~~l~ivDLda~-~~~~~~~~~~~~~~~~-~--~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~ 107 (241)
T d1qo2a_ 34 ELVEKLIEEGFTLIHVVDLSNA-IENSGENLPVLEKLSE-F--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp HHHHHHHHTTCCCEEEEEHHHH-HHCCCTTHHHHHHGGG-G--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHHHHHHHCCCCEEEEEecccc-cccCCcchhheehhcc-c--ccchhhhhhhhhhhhhhhccccccceEecCccccc
Confidence 6788888999999987532110 0012222333333332 2 47999999999999999999999999999997753
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.025 Score=49.65 Aligned_cols=92 Identities=15% Similarity=0.243 Sum_probs=62.8
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH----hCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA----LGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~----~GA~~V~ig~~~l 292 (349)
++.+.+.|++++.+.++.|-...-... -.+.+..+++..++++||++..|=.+..++++... +|||++++..|++
T Consensus 28 i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad~~~~~pP~~ 107 (292)
T d2a6na1 28 IDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY 107 (292)
T ss_dssp HHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCCEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCcceeccCCCC
Confidence 456778999999997654421111111 23455566677777899999999999898887654 6999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. ..++++.++++.+.+
T Consensus 108 ~~---~~~~~i~~~f~~v~~ 124 (292)
T d2a6na1 108 NR---PSQEGLYQHFKAIAE 124 (292)
T ss_dssp SC---CCHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHhh
Confidence 53 235556555555544
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=95.40 E-value=0.028 Score=49.28 Aligned_cols=90 Identities=14% Similarity=0.296 Sum_probs=58.3
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|++++.+.++.|-... +-.--.+.+..+.+..++++||++.-|=.+..++++ |..+|||++++..|++
T Consensus 30 i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv~pP~~ 109 (292)
T d1xkya1 30 VNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY 109 (292)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45677899999999665442111 111123455666666667899998888777777664 4458999999999976
Q ss_pred HHHhhcCHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEML 310 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l 310 (349)
+. ..++++.++++.+
T Consensus 110 ~~---~s~~~i~~~~~~v 124 (292)
T d1xkya1 110 NK---PSQEGMYQHFKAI 124 (292)
T ss_dssp SC---CCHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHH
Confidence 53 2344444444433
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=95.25 E-value=0.032 Score=46.41 Aligned_cols=93 Identities=20% Similarity=0.144 Sum_probs=58.4
Q ss_pred HHHHHHHHhc--CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCC-----CCCCCc-----hhh---HHHHHHHHHHhcC
Q 018919 194 EDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQLDYV-----PAT---IMALEEVVKATQG 258 (349)
Q Consensus 194 ~~i~~i~~~~--~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg-----~~~~~~-----~~~---~~~l~~i~~~~~~ 258 (349)
+..+.+|+.. +-||++-++-+.=.|+.+.++|+|+|.+++.|- .....+ ... ++...++...+ .
T Consensus 7 e~~~~lr~~l~~~~~l~~~g~~d~lsAklae~aGfdai~~~~~g~~~s~g~~~~~g~l~~~d~~~~~~~~a~~i~~~v-~ 85 (197)
T d2p10a1 7 ELVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVV-R 85 (197)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGC-S
T ss_pred HHHHHHHHHHhCCCCEEEcccccHHHHHHHHHcCCCEEEEecHHHHHHcCCcccccccChhHHHHHHHHHHHHHHHhc-c
Confidence 3455555543 789999999999999999999999999986431 111111 111 22222332222 2
Q ss_pred CCcEEEecC----CCCHHH-HHHHHHhCCCEEEE
Q 018919 259 RIPVFLDGG----VRRGTD-VFKALALGASGIFI 287 (349)
Q Consensus 259 ~ipvia~GG----I~~~~d-v~kal~~GA~~V~i 287 (349)
++|||++.+ ..+-.. +.++.++|+.+|++
T Consensus 86 ~iPviaD~dG~g~~~nv~rtv~~~~~aG~agI~~ 119 (197)
T d2p10a1 86 HTPVLAGVNGTDPFMVMSTFLRELKEIGFAGVQN 119 (197)
T ss_dssp SSCEEEEECTTCTTCCHHHHHHHHHHHTCCEEEE
T ss_pred cCceEEecCCCCcchhHHHHHHHHHHcCCeEEec
Confidence 699999765 333334 44455599999986
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=95.23 E-value=0.078 Score=45.89 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++++|+.+++||.+.. +.++++++.+.++|+|+++|..
T Consensus 189 ~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGS 230 (261)
T d1rd5a_ 189 ESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGS 230 (261)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEECH
Confidence 5679999999999999975 6899999999999999999954
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.04 E-value=0.51 Score=40.49 Aligned_cols=133 Identities=20% Similarity=0.259 Sum_probs=80.1
Q ss_pred hHHHHHHHHHcCCeEEe-cC-----------CCCCCHHHH-------HhhCCCceE-EEE-eec--CChhHHHH-HHHHH
Q 018919 90 EYATARAASAAGTIMTL-SS-----------WSTSSVEEV-------ASTGPGIRF-FQL-YVY--KDRNVVAQ-LVRRA 145 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~-~~-----------~~~~~~e~i-------~~~~~~~~~-~Ql-~~~--~~~~~~~~-~~~~~ 145 (349)
+..+|+++.++|+.+++ +. ..+.+++++ ++..+..++ .-+ |.. .+.+...+ ..+.+
T Consensus 26 D~~~A~~~~~agiDiiLVGDSlgmv~~G~~~T~~Vt~d~m~~H~~aV~rga~~~~iv~DmPf~s~~~s~~~a~~nA~r~~ 105 (262)
T d1oy0a_ 26 DYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAATRFL 105 (262)
T ss_dssp SHHHHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEcCchhhhhcCCCCcceeeHHHHHHHHHHHHhccccceeEecchhhhcccchHHHHHHHHHHH
Confidence 56899999999999885 21 123456653 344443322 222 211 23443333 44455
Q ss_pred HHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecC-----------
Q 018919 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLT----------- 214 (349)
Q Consensus 146 ~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~----------- 214 (349)
.+.|++++-+.-+. ...+.|+.+.+. ++||+--.-++
T Consensus 106 ~~~ga~avkleg~~-------------------------------~~~~~I~~L~~~-gIPV~gHiGLtPQ~~~~~Gg~r 153 (262)
T d1oy0a_ 106 KDGGAHAVKLEGGE-------------------------------RVAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGFR 153 (262)
T ss_dssp HTTCCSEEEEEBSG-------------------------------GGHHHHHHHHHH-TCCEEEEEECCC----------
T ss_pred hccccceeeechhh-------------------------------hhHHHHHHHHhc-CCceEEeeeecceeeeecCccc
Confidence 67899998654321 113567777664 78876544211
Q ss_pred -----------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 215 -----------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 215 -----------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
.++|+.+.++||.+|++-.- +.+.-.+|.+.+ ++|+|.-|
T Consensus 154 ~~Gk~~~~~~l~~da~~le~AGa~~ivlE~V----------p~~la~~It~~~--~IPtIGIG 204 (262)
T d1oy0a_ 154 VQGRGDAAEQTIADAIAVAEAGAFAVVMEMV----------PAELATQITGKL--TIPTVGIG 204 (262)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCSEEEEESC----------CHHHHHHHHHHC--SSCEEEES
T ss_pred eeccchhhhHhHHHHHHHHhCCcEEEecccc----------cHhHHHHHHhhC--CceEEEec
Confidence 14588899999999998532 235556777777 89999665
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=95.01 E-value=0.88 Score=38.89 Aligned_cols=133 Identities=20% Similarity=0.251 Sum_probs=83.2
Q ss_pred hHHHHHHHHHcCCeEEe-cC-----------CCCCCHHHH-------HhhCCCceEE-EE-ee-cCChhHHHHHHHHHHH
Q 018919 90 EYATARAASAAGTIMTL-SS-----------WSTSSVEEV-------ASTGPGIRFF-QL-YV-YKDRNVVAQLVRRAER 147 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~-~~-----------~~~~~~e~i-------~~~~~~~~~~-Ql-~~-~~~~~~~~~~~~~~~~ 147 (349)
+..+|+.+.++|+.+++ +. ..+.+++++ ++..|+.+.+ -+ |. ..+.+...+.+.++.+
T Consensus 24 D~~~A~~~~~agvDiiLVGDSlgmv~~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~~~~~a~~~a~~l~~ 103 (262)
T d1m3ua_ 24 DYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMR 103 (262)
T ss_dssp SHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCEEEEcCcHHhcccCCCCcceechHhHHHHHHHHHhccccceeEeccccccchhhHHHHHHHHHHHh
Confidence 56899999999999885 21 112456654 3334433221 11 11 1234445566667778
Q ss_pred cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecC-------------
Q 018919 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLT------------- 214 (349)
Q Consensus 148 ~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~------------- 214 (349)
.|++++-+.-+ .+..+.|+.+.+. ++||+.-.-++
T Consensus 104 ~GAdaVKlEgg-------------------------------~~~~~~I~~L~~~-gIPV~gHiGL~PQ~~~~~GG~r~q 151 (262)
T d1m3ua_ 104 AGANMVKIEGG-------------------------------EWLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYKVQ 151 (262)
T ss_dssp TTCSEEECCCS-------------------------------GGGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSCCC
T ss_pred cCCcEEEeccc-------------------------------hhHHHHHHHHHHc-CCeEEeehhhchhhhhhcCCcccc
Confidence 99999753211 1124678888774 89998665321
Q ss_pred ---H-------HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 215 ---A-------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 215 ---~-------~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
. ++|+.+.++||.+|++-.- +.+.-.+|.+.+ ++|+|.-|
T Consensus 152 Gkt~~ea~~l~~~a~~le~AGaf~ivlE~v----------p~~va~~It~~~--~IPtIGIG 201 (262)
T d1m3ua_ 152 GRGDEAGDQLLSDALALEAAGAQLLVLECV----------PVELAKRITEAL--AIPVIGIG 201 (262)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTCCEEEEESC----------CHHHHHHHHHHC--SSCEEEES
T ss_pred CccHHHHHHHHHHHHHHHhhcceEEEEecc----------cHHHHHHHHhhh--cceeEeec
Confidence 1 5678899999999998532 234556677777 89999665
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=94.80 E-value=0.16 Score=45.47 Aligned_cols=94 Identities=13% Similarity=0.050 Sum_probs=64.0
Q ss_pred HHhhCCCceEEEEee------cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC
Q 018919 117 VASTGPGIRFFQLYV------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (349)
Q Consensus 117 i~~~~~~~~~~Ql~~------~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~ 190 (349)
|++..+.+.++.+-. ..+.+...+.++.++++|.+.+.++...... +. . ...+
T Consensus 203 ir~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~-------------~~---~-----~~~~ 261 (337)
T d1z41a1 203 VKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVH-------------AD---I-----NVFP 261 (337)
T ss_dssp HHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSC-------------CC---C-----CCCT
T ss_pred HhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccc-------------cc---c-----ccCC
Confidence 344444555665532 2345667788899999999998876554211 10 0 0123
Q ss_pred ch-HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcC-CCEEEE
Q 018919 191 KM-DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 191 ~~-~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G-~d~I~v 231 (349)
.+ ....+.+|+.+++||++=+ +.+++.|+.+++.| +|.|.+
T Consensus 262 ~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~ 305 (337)
T d1z41a1 262 GYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFI 305 (337)
T ss_dssp TTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred cccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehh
Confidence 34 6778899999999998644 56899999999998 999877
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=94.78 E-value=0.035 Score=48.64 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=52.1
Q ss_pred HHHHHHHcCCCEEEEecCCCCC--CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchH
Q 018919 217 DARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRP 290 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~ 290 (349)
.++.+.+.|+++|.+.++.|-. ++. .--.+.+..+.+...+++|||+.-|=.+-.++++ |-.+|||+|++..|
T Consensus 27 ~i~~l~~~Gv~Gi~v~GstGE~~~Ls~-~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~pP 105 (295)
T d1o5ka_ 27 LVRYQLENGVNALIVLGTTGESPTVNE-DEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTP 105 (295)
T ss_dssp HHHHHHHTTCCEEEESSGGGTGGGCCH-HHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHcCCCEEEECeeccchhhCCH-HHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4566788999999996554321 111 1123445555566667899999888888888765 33489999999998
Q ss_pred HHH
Q 018919 291 VVY 293 (349)
Q Consensus 291 ~l~ 293 (349)
+++
T Consensus 106 ~y~ 108 (295)
T d1o5ka_ 106 YYN 108 (295)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=94.65 E-value=0.22 Score=41.85 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH----------HHHHHHhCCCEE
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGI 285 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d----------v~kal~~GA~~V 285 (349)
+.+..+.+.|+++++.+.. . +..+.+.++ .-.++.+.||+...+ ..+|+..|||.+
T Consensus 142 ~~a~~~~~~~~~~~~~~~~----------~---~~~~~~~~~-~~~~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~i 207 (231)
T d1eixa_ 142 RLAALTQKCGLDGVVCSAQ----------E---AVRFKQVFG-QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYM 207 (231)
T ss_dssp HHHHHHHHTTCSEEECCGG----------G---HHHHHHHHC-SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEE
T ss_pred HHHHHHHHhccccccccch----------h---hhhhhhhcC-CccceecCCcccCCCCccCccccCCHHHHHHcCCCEE
Confidence 3467788899998876432 1 223333332 456788888875321 446778999999
Q ss_pred EEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 286 FIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 286 ~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
.|||+++.+ +...+.++.++++|
T Consensus 208 IVGR~It~a------~dP~~aa~~i~~~i 230 (231)
T d1eixa_ 208 VIGRPVTQS------VDPAQTLKAINASL 230 (231)
T ss_dssp EECHHHHTS------SSHHHHHHHHHHHT
T ss_pred EECCcccCC------CCHHHHHHHHHHHh
Confidence 999999842 22234555666554
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=94.54 E-value=0.058 Score=49.52 Aligned_cols=69 Identities=12% Similarity=0.213 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+.+..+.++|+|.|++...-|+ .....+.+..+++.. .++||| .|+|.|++.+...+..|||+|-+|-
T Consensus 153 ~~ra~~L~~aG~D~ivID~AhG~----s~~~~~~i~~ik~~~-~~v~vI-aGNV~T~e~a~~L~~~GaD~VkVGi 221 (388)
T d1eepa_ 153 IERVEELVKAHVDILVIDSAHGH----STRIIELIKKIKTKY-PNLDLI-AGNIVTKEAALDLISVGADCLKVGI 221 (388)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHC-TTCEEE-EEEECSHHHHHHHHTTTCSEEEECS
T ss_pred HHHHHHHHhhccceeeeeccccc----hHHHHHHHHHHHHHC-CCCcee-eccccCHHHHHHHHhcCCCeeeecc
Confidence 47788899999999999753332 223456677776654 367765 5779999999998899999998884
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.81 Score=39.35 Aligned_cols=181 Identities=13% Similarity=0.123 Sum_probs=101.5
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+.-..-.+.++-..+++-..+.|+.+++ + ++...+.+|..+ . .+ .+.++.... .+....
T Consensus 7 ~a~~TPf~~d~~iD~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~-~s~~~~ 85 (292)
T d2a6na1 7 VAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGA-NATAEA 85 (292)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHH
T ss_pred eeEECCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeeccc-chHHHH
Confidence 5566676433333444455677777778877543 2 234467766322 1 22 344554332 455566
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe------
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV------ 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v------ 212 (349)
.+.++.+++.|++++.+.- |.. . + ..+....+..+.+.+.+++||++=..
T Consensus 86 i~~~~~a~~~Gad~~~~~p--P~~-----------~-~----------~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~ 141 (292)
T d2a6na1 86 ISLTQRFNDSGIVGCLTVT--PYY-----------N-R----------PSQEGLYQHFKAIAEHTDLPQILYNVPSATGC 141 (292)
T ss_dssp HHHHHTTTTSSCCEEEEEC--CCS-----------S-C----------CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSC
T ss_pred HHHhccHHhcCCcceeccC--CCC-----------C-C----------CCHHHHHHHHHHHhhccCCcEEEEEeccccCC
Confidence 7788888889999987643 321 0 0 00112256688888889999997653
Q ss_pred -cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 213 -LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 213 -~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
.+++..+++.+. +.|+-.= +.. ........+.+..++++.++ .| +.......+.+||++.+.+...
T Consensus 142 ~~~~e~~~~L~~~--pnv~giK------~~~-~~~~~~~~~~~~~~~~~~~~-~g---~~~~~~~~~~~G~~G~i~~~~~ 208 (292)
T d2a6na1 142 DLLPETVGRLAKV--KNIIGIK------EAT-GNLTRVNQIKELVSDDFVLL-SG---DDASALDFMQLGGHGVISVTAN 208 (292)
T ss_dssp CCCHHHHHHHHTS--TTEEEEE------ECS-CCTTHHHHHHTTSCTTSEEE-EC---CGGGHHHHHHTTCCEEEESGGG
T ss_pred ccCHHHHHHHhcC--CCEEEEE------ecc-CcchhhhhhhhhcCCccEEe-ec---chhhhhhHhhCCceEEEeecch
Confidence 356777777664 3332110 000 11122233333443345444 44 2456677888999999998744
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=94.41 E-value=0.091 Score=46.47 Aligned_cols=85 Identities=24% Similarity=0.355 Sum_probs=59.2
Q ss_pred CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHH
Q 018919 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQT 201 (349)
Q Consensus 122 ~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~ 201 (349)
+.+..+.+-...|.+...+.++.++++|++.+.||--+.. +.+. .+..|+.|+.+++
T Consensus 122 ~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~---------q~~~--------------~~a~~~~i~~~~~ 178 (305)
T d1vhna_ 122 SGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVV---------QSFT--------------GRAEWKALSVLEK 178 (305)
T ss_dssp SSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTT---------TTTS--------------SCCCGGGGGGSCC
T ss_pred ccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhh---------hccc--------------cchhhhHHHhhhh
Confidence 3445555544345555678899999999999999865421 1111 1222788888876
Q ss_pred hcCCcEEEEE-ecCHHHHHHHHH-cCCCEEEE
Q 018919 202 ITKLPILVKG-VLTAEDARIAVQ-AGAAGIIV 231 (349)
Q Consensus 202 ~~~~pv~vK~-v~~~~~a~~a~~-~G~d~I~v 231 (349)
++||++-| +.+.+++..+.+ .|+|+|-+
T Consensus 179 --~ipvi~NGdI~s~~d~~~~l~~tg~dgVMi 208 (305)
T d1vhna_ 179 --RIPTFVSGDIFTPEDAKRALEESGCDGLLV 208 (305)
T ss_dssp --SSCEEEESSCCSHHHHHHHHHHHCCSEEEE
T ss_pred --hhhhhcccccccHHHHHHHHHhcCCCeEeh
Confidence 68987655 689999999876 79999988
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=94.29 E-value=0.071 Score=46.39 Aligned_cols=39 Identities=31% Similarity=0.341 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++++|+.+++|+.+.. +.++++++.+ .+||+++|..
T Consensus 191 ~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGS 230 (271)
T d1ujpa_ 191 KDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGS 230 (271)
T ss_dssp HHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECH
T ss_pred HHHHHhhhccccCCeEEeCCCCCHHHHHHh--CCCCEEEEcH
Confidence 5779999999999999974 6889999875 5999999954
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=93.89 E-value=1.5 Score=37.98 Aligned_cols=179 Identities=13% Similarity=0.041 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCCeEEecCC-----C--------CCCHHHHH-------hhCCCceEEEE---eecCChhHHHHHHHHHHH
Q 018919 91 YATARAASAAGTIMTLSSW-----S--------TSSVEEVA-------STGPGIRFFQL---YVYKDRNVVAQLVRRAER 147 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~-----~--------~~~~e~i~-------~~~~~~~~~Ql---~~~~~~~~~~~~~~~~~~ 147 (349)
..-|+.+.+.|...+..+. + ..+++|+. +...-|.++=. |+ .++..+.+.++++++
T Consensus 26 ~~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG-~~~~~v~~~v~~~~~ 104 (289)
T d1muma_ 26 ANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFG-SSAFNVARTVKSMIK 104 (289)
T ss_dssp HHHHHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhcccCCCeeeccccccc-ccchHHHHHHHHHHH
Confidence 3677888898876554221 1 12444432 22223333322 22 235567788999999
Q ss_pred cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCc---EEEEEe----cCHHH--
Q 018919 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLP---ILVKGV----LTAED-- 217 (349)
Q Consensus 148 ~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~p---v~vK~v----~~~~~-- 217 (349)
+|+.++.|- |... |++-+......+.+.+. ...|+..++.-.-| |+...= ...++
T Consensus 105 aGvagi~iE-Dq~~--------------pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~eAi 169 (289)
T d1muma_ 105 AGAAGLHIE-DQVG--------------AKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAI 169 (289)
T ss_dssp HTCSEEEEE-CBCC--------------CSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCHHHHH
T ss_pred CCCCEEEec-Cccc--------------ccccccccccceecHHHHHHHHHHHHHhcCCcchhheeccccccccCHHHHH
Confidence 999997662 3321 21111100000111111 33344444443333 333221 12333
Q ss_pred --HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcE-EEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 218 --ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV-FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 218 --a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv-ia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
++...++|||.|.+. ++.+.+.+.++++.++..+++ +..||-..--+.-+.-.+|.+.+..+...+++
T Consensus 170 ~R~~aY~eAGAD~vf~~---------~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~p~~s~~eL~~~Gv~~v~~~~~~~~a 240 (289)
T d1muma_ 170 ERAQAYVEAGAEMLFPE---------AITELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVAMALYPLSAFRA 240 (289)
T ss_dssp HHHHHHHHTTCSEEEET---------TCCCHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHHHHH
T ss_pred HHHHHhhhcCCcEEEec---------CCCCHHHHHHHHHhcCCCEEEeecCcCCCccchHHHHHHhccceEEechHHHHH
Confidence 566789999999873 234567788888887433332 23344332224446667999999999876664
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.67 E-value=1.9 Score=37.01 Aligned_cols=180 Identities=13% Similarity=0.142 Sum_probs=103.3
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe-----cCCCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-----~~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|-++.|+.-..-.+.++-..+++-+-+.|+.+++ |++...+.+|..+ . .. .+.+.+... .+.+.+
T Consensus 13 ~a~~TPf~~dg~iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~-~s~~~~ 91 (296)
T d1xxxa1 13 TAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGT-YDTAHS 91 (296)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCC-SCHHHH
T ss_pred eeeECCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEecccc-chhHHH
Confidence 5566676543333445556777888888876554 2334467766422 1 22 345555543 466778
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe------
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV------ 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v------ 212 (349)
.+.++.+++.|++++.+.... . .-+ .+....+..+.+.+.+++||++=..
T Consensus 92 i~~a~~a~~~Gad~v~i~~P~--~-----------~~~-----------~~~~l~~~~~~v~~~~~~pi~lYn~p~~~g~ 147 (296)
T d1xxxa1 92 IRLAKACAAEGAHGLLVVTPY--Y-----------SKP-----------PQRGLQAHFTAVADATELPMLLYDIPGRSAV 147 (296)
T ss_dssp HHHHHHHHHHTCSEEEEECCC--S-----------SCC-----------CHHHHHHHHHHHHTTCSSCEEEEECHHHHSS
T ss_pred HHHHHHHHHhcCCeEEEEecc--C-----------CCC-----------CHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 899999999999998764321 1 000 0111256688888888999987543
Q ss_pred -cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 213 -LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 213 -~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
.+++..+++.+.. .|+-.=. .. +.+..+.+.... ..+.++ .|+ ..-.+..+.+||++.+-|...
T Consensus 148 ~~~~~~~~~L~~~p--~i~giK~------~s-~d~~~~~~~~~~--~~~~~~-~g~---~~~~~~~~~~G~~G~is~~~n 212 (296)
T d1xxxa1 148 PIEPDTIRALASHP--NIVGVKD------AK-ADLHSGAQIMAD--TGLAYY-SGD---DALNLPWLAMGATGFISVIAH 212 (296)
T ss_dssp CCCHHHHHHHHTST--TEEEEEE------CS-CCHHHHHHHHHH--HCCEEE-ECS---GGGHHHHHHHTCCEEEESTHH
T ss_pred CCCHHHHHHhcCCC--Ceeeecc------cc-ccHHHHHhhhcc--cccccc-cCc---ccccchhhhcccccccchhcc
Confidence 4677777776542 2221100 11 123333333222 133333 332 234677888999999999865
Q ss_pred H
Q 018919 292 V 292 (349)
Q Consensus 292 l 292 (349)
+
T Consensus 213 ~ 213 (296)
T d1xxxa1 213 L 213 (296)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=93.50 E-value=0.43 Score=46.97 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-----cCCCc-EEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIP-VFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ip-via~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
++|..+++.|+..|++|..+-..-....|.+-++..+..++ +.++- |+=+|-+|+.-+++-.+-.||++|-=.-
T Consensus 169 ~eA~~AV~~G~~ilILSDr~~~~~~~~IP~LLAv~aVHh~Lir~gLR~~~sIIveSGeare~Hh~A~LiGyGA~AV~PYL 248 (771)
T d1ea0a2 169 QETEDAVRGGATHVILTDEAMGPARAAIPAILATGAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYL 248 (771)
T ss_dssp HHHHHHHHHTCCEEEEECTTCBTTEEECCHHHHHHHHHHHHHTTTCGGGCEEEEECSSCCSHHHHHHHHTTTCSEEECHH
T ss_pred HHHHHHHhCCCcEEEEeccccccchhhhHHHHHHHHHHHHHHHcCCCccceeEEeehhhhhhhhhhheeeccccccChHH
Confidence 44788899999999998653221112345666666666654 22454 4556779999999888889999996322
Q ss_pred HHH--HHHhhcC-------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 290 PVV--YSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 290 ~~l--~~~~~~G-------~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
++- ..+...+ ++.+.++.+.+.++|.+.|..+|.++++.-++..+.
T Consensus 249 a~e~i~~~~~~~~~~~~~~~~a~~ny~kAi~kGLlKIMSKMGIStl~SY~GaqiF 303 (771)
T d1ea0a2 249 AQEAIAERHRRGLFGSMPLEKGMANYKKAIDDGLLKIMSKMGISVISSYRGGGNF 303 (771)
T ss_dssp HHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHTTSCCE
T ss_pred HHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHhhhh
Confidence 221 1111111 357889999999999999999999999988776554
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=93.46 E-value=1.8 Score=36.31 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=89.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-h-HHHHHHHHHhcCCcEEEEEecCH
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-M-DEDVKWLQTITKLPILVKGVLTA 215 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~-~~~i~~i~~~~~~pv~vK~v~~~ 215 (349)
..+.++.++++|+++|.+|+-. |.. . .+++..+++..+.|+=+-+-.+.
T Consensus 26 ~~~~a~~~~~~GadgITvH~R~-----------------------------DrRHI~~~Dv~~l~~~~~~~lNlE~a~~~ 76 (242)
T d1m5wa_ 26 PVQAAFIAEQAGADGITVHLRE-----------------------------DRRHITDRDVRILRQTLDTRMNLEMAVTE 76 (242)
T ss_dssp HHHHHHHHHTTTCSEEEEECCT-----------------------------TCSSSCHHHHHHHHHHCSSEEEEEECSSH
T ss_pred HHHHHHHHHHcCCCeEEeCCCC-----------------------------CccccchHHHHHHHHHhhcccccccccch
Confidence 3567888999999999988731 222 2 57899999999999988888999
Q ss_pred HHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
+....+.+.-.+.+++-.-..-+ ++. ......|..+.+.++ -++.++.+- +.+++-.|..+|||.|=
T Consensus 77 e~i~ia~~~kP~qvtLVPe~r~elTTegGld~-~~~~~~L~~~i~~l~~~girvSLFiDp---d~~~i~~a~~lGad~IE 152 (242)
T d1m5wa_ 77 EMLAIAVETKPHFCCLVPEKRQEVTTEGGLDV-AGQRDKMRDACKRLADAGIQVSLFIDA---DEEQIKAAAEVGAPFIE 152 (242)
T ss_dssp HHHHHHHHHCCSEEEECCCCSSCSSCCSCCCS-GGGHHHHHHHHHHHHHTTCEEEEEECS---CHHHHHHHHHTTCSEEE
T ss_pred hHHHHHHHhccceEEEeecCccccCcCCceee-hhhHHHHHHHHHHHHhcCCeEEEEecc---chhhHHHHhhcCcceee
Confidence 99999999999999986422211 222 122344555544442 367888885 57888888889999999
Q ss_pred EchHHH
Q 018919 287 IGRPVV 292 (349)
Q Consensus 287 ig~~~l 292 (349)
+-|--+
T Consensus 153 lhTG~Y 158 (242)
T d1m5wa_ 153 IHTGCY 158 (242)
T ss_dssp EECHHH
T ss_pred eecccc
Confidence 998644
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=93.36 E-value=0.39 Score=36.99 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cC-HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC
Q 018919 193 DEDVKWLQTITKLPILVKGV-LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~-~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 270 (349)
...+..+-+..+.-++-=+. .+ .+.+..+.+.++|.|.+|..-+.. .+...+.+..+++.-..++||++.|++.+
T Consensus 20 ~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~lS~~~~~~---~~~~~~~~~~l~~~~~~~i~iivGG~~~~ 96 (137)
T d1ccwa_ 20 NKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQG---EIDCKGLRQKCDEAGLEGILLYVGGNIVV 96 (137)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTH---HHHHTTHHHHHHHTTCTTCEEEEEESCSS
T ss_pred HHHHHHHHHHCCCeEEecccccCHHHHHHHHHhcCCCEEEEeeccccc---hHHHHHHHHHHHHhccCCCEEEEeCCcCC
Confidence 45677666666777764443 34 455788889999999998754321 11111233333333224699999998865
Q ss_pred ----HHHHH-HHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 271 ----GTDVF-KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 271 ----~~dv~-kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
..++. +.-++|.++|.=.. ...+.+++.++++|+
T Consensus 97 ~~~~~~~~~~~l~~~Gv~~if~~~-----------t~~~~~~~~l~~~l~ 135 (137)
T d1ccwa_ 97 GKQHWPDVEKRFKDMGYDRVYAPG-----------TPPEVGIADLKKDLN 135 (137)
T ss_dssp SSCCHHHHHHHHHHTTCSEECCTT-----------CCHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHcCCCEEECCC-----------CCHHHHHHHHHHHhC
Confidence 44444 45568999985221 223355666666653
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=93.18 E-value=1.6 Score=36.45 Aligned_cols=120 Identities=12% Similarity=-0.003 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEEE
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVKG 211 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK~ 211 (349)
++...+.++.+.+.|++.+-+.++.. +++. .+.|+.+|+.. +.++.+=.
T Consensus 18 ~~~~~~~~~~~~~~Gf~~~KiKvG~~----------------------------~~~~D~~~v~~ir~~~g~~~~l~vDa 69 (244)
T d2chra1 18 KRDLDSAVEMIERRRHNRFKVKLGFR----------------------------SPQDDLIHMEALSNSLGSKAYLRVDV 69 (244)
T ss_dssp HHHHHHHHHHHHTTSCCEEEEECSSS----------------------------CHHHHHHHHHHHHHHTTTTSEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCC----------------------------CHHHHHHHHHHHHHhcCCCceEEEeC
Confidence 34566777777888999998877431 1222 46688888887 45555422
Q ss_pred e--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCE
Q 018919 212 V--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASG 284 (349)
Q Consensus 212 v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~ 284 (349)
- -+.++| +.+.+.+...+- -...+..++.+.++++.+ ++||+.+--+.+..|...++..| +|.
T Consensus 70 N~~~~~~~A~~~~~~l~~~~i~~iE--------eP~~~~d~~~~~~l~~~~--~ipia~~E~~~~~~~~~~~i~~~~~d~ 139 (244)
T d2chra1 70 NQAWDEQVASVYIPELEALGVELIE--------QPVGRENTQALRRLSDNN--RVAIMADESLSTLASAFDLARDRSVDV 139 (244)
T ss_dssp TTCCCTHHHHHHHHHHHTTTCCEEE--------CCSCSSCHHHHHHHHHHC--SSEEEESSSCCSHHHHHHHHTTTCCSE
T ss_pred CCCcchHHHHHHHHHHhhhhHHHHh--------hhhhhccchhhhhhccce--eeeeeecccccccchhhhhhhcceeEE
Confidence 1 234444 445556654431 011223567788888877 79999999999999999999976 789
Q ss_pred EEEchHHH
Q 018919 285 IFIGRPVV 292 (349)
Q Consensus 285 V~ig~~~l 292 (349)
|++.-..+
T Consensus 140 v~~d~~~~ 147 (244)
T d2chra1 140 FSLKLCNM 147 (244)
T ss_dssp ECCCHHHH
T ss_pred Eeeccccc
Confidence 98886543
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=93.08 E-value=0.21 Score=44.61 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+.+..+.++|+|.++++...|+ .....+.+..+++.. .+++|| .|.+.+++.+.+.+..|||+|-+|
T Consensus 100 ~e~~~~li~agvd~ivId~A~G~----~~~~~~~ik~ik~~~-~~~~vi-aGnV~t~~~a~~l~~~GaD~v~VG 167 (330)
T d1vrda1 100 MERVEKLVKAGVDVIVIDTAHGH----SRRVIETLEMIKADY-PDLPVV-AGNVATPEGTEALIKAGADAVKVG 167 (330)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHC-TTSCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEecCCCC----chhHHHHHHHHHHhC-CCCCEE-eechhHHHHHHHHHHcCCCEEeec
Confidence 46678899999999999754332 123356666666654 357665 577999999988888999999876
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=93.03 E-value=0.13 Score=46.58 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+.++.+.++|+|.|++..+.|+ .....+.+..+++.....+||| .|.|.|++.+...+..|||+|-+|
T Consensus 112 ~~~~~~L~~ag~d~i~IDvAhG~----~~~v~~~i~~ir~~~~~~~~Ii-AGNVaT~e~~~~L~~aGaD~vkVG 180 (362)
T d1pvna1 112 RERVPALVEAGADVLCIDSSDGF----SEWQKITIGWIREKYGDKVKVG-AGNIVDGEGFRYLADAGADFIKIG 180 (362)
T ss_dssp HHHHHHHHHHTCSEEEECCSCCC----BHHHHHHHHHHHHHHGGGSCEE-EEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHhhcCceEEeechhccc----hhHHHHHHHHHHHhhccceeee-cccccCHHHHHHHHHhCCcEEEec
Confidence 35678889999999999765442 1223456666655554457766 578999999999889999999998
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=92.99 E-value=0.16 Score=44.15 Aligned_cols=90 Identities=16% Similarity=0.181 Sum_probs=55.8
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-...-.. --.+.+..+++.+++++|+|+.-|=.+-.++++ +-.+|||++++-.|++
T Consensus 29 i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad~~~v~~p~~ 108 (295)
T d1hl2a_ 29 VQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFY 108 (295)
T ss_dssp HHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcCCceeeeeeccc
Confidence 45567889999999765442111111 123455556666777899998666666666664 3348999999999876
Q ss_pred HHHhhcCHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEML 310 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l 310 (349)
+. ...+++.+.+..+
T Consensus 109 ~~---~~~~~~~~~~~~~ 123 (295)
T d1hl2a_ 109 YP---FSFEEHCDHYRAI 123 (295)
T ss_dssp SC---CCHHHHHHHHHHH
T ss_pred cC---CChHHHHHHHHHH
Confidence 52 2345544444433
|
| >d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Transaldolase species: Escherichia coli [TaxId: 562]
Probab=92.81 E-value=2.8 Score=36.60 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC----------CC---CchhhHHHHHHHHHHh---c
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ----------LD---YVPATIMALEEVVKAT---Q 257 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~----------~~---~~~~~~~~l~~i~~~~---~ 257 (349)
+.++.+.+ -++++-+-.+.+.+.|..|.++|+..|... -||- .. .+.+....+.++.+.. +
T Consensus 140 ~A~~~L~~-~GI~vN~TlvFS~~Qa~~aa~Aga~~iSpf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g 216 (316)
T d1onra_ 140 RAAEQLEK-EGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHG 216 (316)
T ss_dssp HHHHHHHH-TTCCEEEEEECSHHHHHHHHHTTCSEEEEB--SHHHHHHHHHSSSCCCCCGGGCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-cCCcccceeeecHHHHHHHHHcCCeEEeee--ecchhhhhhcccccccccccCCchHHHHHHHHHHHHHcC
Confidence 34555543 489999999999999999999999998764 2221 00 1223345555555543 2
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.+..|++ ..+|+..++..+ +|+|.+-+.-.++..+.
T Consensus 217 ~~t~v~~-AS~r~~~~v~~l--aG~D~~Ti~p~~l~~l~ 252 (316)
T d1onra_ 217 YETVVMG-ASFRNIGEILEL--AGCDRLTIAPALLKELA 252 (316)
T ss_dssp CCCEEEE-BCCSSHHHHHHT--TTSSEEEECHHHHHHHH
T ss_pred CCceeeh-hhccchhhHHHH--hcCCceecCHHHHHHHh
Confidence 3455555 559999999653 69999999888877664
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=92.51 E-value=2.7 Score=35.73 Aligned_cols=182 Identities=15% Similarity=0.137 Sum_probs=101.3
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe-----cCCCCCCHHHHHhh--------CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAST--------GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-----~~~~~~~~e~i~~~--------~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+.-+ -.+.++-..+.+-.-+.|+.+++ |++...+.+|..+. .. .+.+++... .+.+..
T Consensus 8 ~~~~TPf~d~-~iD~~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~st~~a 85 (295)
T d1o5ka_ 8 TAIVTPFKNG-ELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGT-NSTEKT 85 (295)
T ss_dssp EECCCCEETT-EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHH
T ss_pred eeeEcCcCCC-cCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeeccc-ccHHHH
Confidence 4455555322 23444555677777778877654 23345677764321 22 355666543 456677
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+.- |.. .-| +.+ ..+..+.+.+.+++|+++=..
T Consensus 86 i~~a~~A~~~Gad~v~v~p--P~y-----------~~~------------s~~~i~~~~~~ia~a~~~pi~iYn~P~~~g 140 (295)
T d1o5ka_ 86 LKLVKQAEKLGANGVLVVT--PYY-----------NKP------------TQEGLYQHYKYISERTDLGIVVYNVPGRTG 140 (295)
T ss_dssp HHHHHHHHHHTCSEEEEEC--CCS-----------SCC------------CHHHHHHHHHHHHTTCSSCEEEEECHHHHS
T ss_pred HHHHHHHHHcCCCEEEEeC--CCC-----------CCC------------CHHHHHHHHHHHHhccCCCeeEEeccchhc
Confidence 8899999999999987632 211 000 111 256678888888999998553
Q ss_pred --cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 213 --LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 213 --~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
.+++...++.+.-...+-+-... +.......+....+...... .+..|. ...+..++.+||++.+.|..
T Consensus 141 ~~~~~~~~~~l~~~~~ni~~iK~~~-----~~~~~~~~~~~~~~~~~~~~-~v~~g~---~~~~~~~~~~Ga~G~i~~~~ 211 (295)
T d1o5ka_ 141 VNVLPETAARIAADLKNVVGIKEAN-----PDIDQIDRTVSLTKQARSDF-MVWSGN---DDRTFYLLCAGGDGVISVVS 211 (295)
T ss_dssp CCCCHHHHHHHHHHCTTEEEEEECC-----CCHHHHHHHHHHHHHHCTTC-EEEESS---GGGHHHHHHHTCCEEEESGG
T ss_pred ccchhHHHHHHHhhcccccceecCC-----cchhhhhhHHHHhhhcCCcc-eecccc---ccchhhhhhcCCCccccccc
Confidence 45677766655333333221111 11122222222223332233 333332 34566788999999999974
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.44 E-value=0.62 Score=40.65 Aligned_cols=141 Identities=20% Similarity=0.179 Sum_probs=75.4
Q ss_pred ChhhHHHHHHHHHcCCeEE-e--cCCCC-----------CCHH---H----HHhhCCCceEEEEeecCChhHHHHHHHHH
Q 018919 87 PEGEYATARAASAAGTIMT-L--SSWST-----------SSVE---E----VASTGPGIRFFQLYVYKDRNVVAQLVRRA 145 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~-~--~~~~~-----------~~~e---~----i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~ 145 (349)
++.....++.+.+.|+.++ + +.-.. ...+ + +++....+.++.+-. +.+...+.++.+
T Consensus 115 ~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~pv~vKl~~--~~~~~~~i~~~~ 192 (312)
T d1gtea2 115 KNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTP--NVTDIVSIARAA 192 (312)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECS--CSSCHHHHHHHH
T ss_pred hhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhhccCCceeecccc--cchhHHHHHHHH
Confidence 3334577888888887655 2 21110 0111 1 222233567888743 223345778888
Q ss_pred HHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccc-cCCCCCC---ch-HHHHHHHHHhc-CCcEEEE-EecCHHH
Q 018919 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKN-FQGLDLG---KM-DEDVKWLQTIT-KLPILVK-GVLTAED 217 (349)
Q Consensus 146 ~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~-~~~~~~~---~~-~~~i~~i~~~~-~~pv~vK-~v~~~~~ 217 (349)
++.|++++.+. +... + +..........+. +..... ..++..+ .. ++.++++++.. ++||+.- ++.+.+|
T Consensus 193 ~~~g~~gi~~~-n~~~-~-~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d 269 (312)
T d1gtea2 193 KEGGADGVTAT-NTVS-G-LMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAES 269 (312)
T ss_dssp HHHTCSEEEEC-CCEE-E-CCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHH
T ss_pred HHhcccceEEE-eecc-c-ccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHH
Confidence 89999998652 2210 0 0000000000000 000000 0011011 12 57788888887 5897654 4789999
Q ss_pred HHHHHHcCCCEEEEe
Q 018919 218 ARIAVQAGAAGIIVS 232 (349)
Q Consensus 218 a~~a~~~G~d~I~v~ 232 (349)
+.+.+.+|||+|.+.
T Consensus 270 ~~~~l~aGA~~Vqv~ 284 (312)
T d1gtea2 270 GLQFLHSGASVLQVC 284 (312)
T ss_dssp HHHHHHTTCSEEEES
T ss_pred HHHHHHcCCCeeEEC
Confidence 999999999999985
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=92.41 E-value=0.21 Score=43.35 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=48.5
Q ss_pred HHHHHc-CCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 219 RIAVQA-GAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 219 ~~a~~~-G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
+.+++. |+++|.+.++.|-...-. ..-.+.+..+++..++++||++.=|=.+..|+++ +-.+|||+|++..|++
T Consensus 31 ~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~~pP~~ 110 (293)
T d1f74a_ 31 RHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFY 110 (293)
T ss_dssp HHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEECCCCCS
T ss_pred HHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHcCCCEeeccCccc
Confidence 345554 999999965533111001 1123445555666667899998766677777765 3348999999999887
Q ss_pred H
Q 018919 293 Y 293 (349)
Q Consensus 293 ~ 293 (349)
+
T Consensus 111 ~ 111 (293)
T d1f74a_ 111 Y 111 (293)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=92.21 E-value=0.42 Score=40.87 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+.|+...+.||++|.|-.... .+.+ +++.|..+++.+ ++||+.--=|.++.++.++..+|||+|.+--+++
T Consensus 68 ~~~A~~y~~~GA~aiSVLTe~~-~F~G---s~~dl~~v~~~~--~iPvLrKDFIid~~QI~ea~~~GADaVLLIaall 139 (254)
T d1vc4a_ 68 VEAALAYARGGARAVSVLTEPH-RFGG---SLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVALL 139 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCS-SSCC---CHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred HHHHHHHHhcCCceEEEEcCcc-cccc---cHHHHHHHHHHc--CCCcccCCccccHHHHHHHHhccchHHHHHHHHH
Confidence 4678888999999999854211 1112 356677777776 8999999999999999999999999999987653
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=92.15 E-value=2.9 Score=35.24 Aligned_cols=187 Identities=13% Similarity=0.122 Sum_probs=99.1
Q ss_pred hHHHHHHHHHcCCeEEe--cCCCCCCHHHHHh---hCC---CceEEEEeecCChhHHHHHHHHHHHcCCCEEEE-ecCCC
Q 018919 90 EYATARAASAAGTIMTL--SSWSTSSVEEVAS---TGP---GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL-TVDTP 160 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~--~~~~~~~~e~i~~---~~~---~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i-~~d~p 160 (349)
+..+++.++..|..+++ .++++.+.+++.. ... ...++-+-. .+ ...++++-++|+.+|.+ +++++
T Consensus 26 ~p~~~ei~a~~G~Dfv~iD~EHg~~~~~~~~~~i~a~~~~g~~~~VRvp~-~~----~~~i~~~LD~Ga~GIivP~v~s~ 100 (253)
T d1dxea_ 26 NPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPT-NE----PVIIKRLLDIGFYNFLIPFVETK 100 (253)
T ss_dssp SHHHHHHHTTSCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSS-SC----HHHHHHHHHTTCCEEEESCCCSH
T ss_pred CHHHHHHHHcCCCCEEEEecccCCCChhHHHHHHHHHhccCCCceecCCC-CC----HHHHHHHHhcCccEEEecccCCH
Confidence 34788999999998876 4667777766432 222 233444321 23 35688899999999875 22221
Q ss_pred CCCchhHHhhhhcCC-CCcCcccccCCCCCCchH----HHHHHHHHhcCCcEEEEEecCHHHHHH----HHHcCCCEEEE
Q 018919 161 RLGRREADIKNRFTL-PPFLTLKNFQGLDLGKMD----EDVKWLQTITKLPILVKGVLTAEDARI----AVQAGAAGIIV 231 (349)
Q Consensus 161 ~~g~r~~d~~~~~~~-p~~~~~~~~~~~~~~~~~----~~i~~i~~~~~~pv~vK~v~~~~~a~~----a~~~G~d~I~v 231 (349)
...+.......- |.| .+...+......+ +..++.. +-.+++=.+-+.+-... +.--|+|++.+
T Consensus 101 ---eea~~~v~~~~ypP~G--~Rg~~~~~~~~~~~~~~~~~~~~n---~~~~vi~~IEt~~av~nleeI~av~giD~i~i 172 (253)
T d1dxea_ 101 ---EEAELAVASTRYPPEG--IRGVSVSHRANMFGTVADYFAQSN---KNITILVQIESQQGVDNVDAIAATEGVDGIFV 172 (253)
T ss_dssp ---HHHHHHHHTTSCTTTC--CCCCCSSSGGGGGGTSTTHHHHHT---TSCEEEEEECSHHHHHTHHHHHTSTTCCEEEE
T ss_pred ---HHHHHHHHhheeCCCC--CcCcCcceeccccccccccccccc---cceEEEeecccHHHHHHHHHHhccCCCceEEE
Confidence 111222222222 222 1221111000111 2232222 22333335656544333 33368999988
Q ss_pred ecC------CCCCCCCchhhHHHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 232 SNH------GARQLDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 232 ~~~------gg~~~~~~~~~~~~l~~i~~~~~-~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
... |...-...|.-.+.+.++.+.++ .++++-.- ..+++++.+.+..|++++.+|+-.
T Consensus 173 Gp~DLs~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~--~~~~~~~~~~~~~G~~~i~~g~D~ 237 (253)
T d1dxea_ 173 GPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGIL--APVEADARRYLEWGATFVAVGSDL 237 (253)
T ss_dssp CHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEE--CCSHHHHHHHHHTTCCEEEEEEHH
T ss_pred ecCcHHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEe--cCCHHHHHHHHHcCCCEEEehHHH
Confidence 521 21101123444566666666553 24555433 358999999999999999999843
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=92.11 E-value=2.7 Score=34.78 Aligned_cols=120 Identities=14% Similarity=0.046 Sum_probs=78.5
Q ss_pred CChhHH-HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEE
Q 018919 133 KDRNVV-AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPIL 208 (349)
Q Consensus 133 ~~~~~~-~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~ 208 (349)
.+.+.. .+..+.+.+.|++++-+.++.. +.+. .+.++.+|+.+ +..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~G~~~~KiKvG~~----------------------------~~~~Di~~i~~ir~~~g~~~~l~ 66 (242)
T d1muca1 15 GDTARDIAEARHMLEIRRHRVFKLKIGAN----------------------------PVEQDLKHVVTIKRELGDSASVR 66 (242)
T ss_dssp SCHHHHHHHHHHHHHTTSCSEEEEECSSS----------------------------CHHHHHHHHHHHHHHHGGGSEEE
T ss_pred CCcHHHHHHHHHHHHHCCCCEEEEEECCC----------------------------CHHHHHHHHHHHHHHhCCCCEEE
Confidence 445443 4555556667999998876431 1122 45688888876 45555
Q ss_pred EEEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-
Q 018919 209 VKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG- 281 (349)
Q Consensus 209 vK~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G- 281 (349)
+--- -+.++ ++.+.+.|+..|- -...+..++.+.++++.+ ++||.++..+.+..|+.+++..|
T Consensus 67 vDaN~~~~~~~A~~~~~~l~~~~i~~iE--------eP~~~~d~~~~~~L~~~~--~~pIa~~E~~~~~~~~~~~i~~~~ 136 (242)
T d1muca1 67 VDVNQYWDESQAIRACQVLGDNGIDLIE--------QPISRINRGGQVRLNQRT--PAPIMADESIESVEDAFSLAADGA 136 (242)
T ss_dssp EECTTCBCHHHHHHHHHHHHHTTCCCEE--------CCBCTTCHHHHHHHHHHC--SSCEEESTTCSSHHHHHHHHHHTC
T ss_pred EecCCCCcHHHHHHHHHHhhhhhHHHhh--------cchhhhhhhhhhhhhhhh--hheeecccccccccchhhhhhccc
Confidence 4321 24544 4556667765541 011123467788888876 79999999999999999999987
Q ss_pred CCEEEEchH
Q 018919 282 ASGIFIGRP 290 (349)
Q Consensus 282 A~~V~ig~~ 290 (349)
+|.+++--.
T Consensus 137 ~d~~~~d~~ 145 (242)
T d1muca1 137 ASIFALKIA 145 (242)
T ss_dssp CSEEEECHH
T ss_pred ccccccccc
Confidence 788888643
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=92.10 E-value=0.65 Score=45.86 Aligned_cols=120 Identities=14% Similarity=0.109 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCCEEEEecCC-CCCCCC---chhhHHHHHHHHHHh-----cCCCc-EEEecCCCCHHHHHHHHHhCCCEE
Q 018919 216 EDARIAVQAGAAGIIVSNHG-ARQLDY---VPATIMALEEVVKAT-----QGRIP-VFLDGGVRRGTDVFKALALGASGI 285 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~g-g~~~~~---~~~~~~~l~~i~~~~-----~~~ip-via~GGI~~~~dv~kal~~GA~~V 285 (349)
++|..+++.|+..|++|..+ +...+. ..|.+-++..+..++ +.++- |+=+|.+|+.-|++-.+-.||++|
T Consensus 155 ~ea~~AV~~G~~ilILSDR~~~~~i~~~~~~IP~lLAv~AVH~~Lir~gLR~~~sLVveSGe~revHh~A~LiGyGA~AV 234 (809)
T d1ofda2 155 KTAIATVQAGAEILVLTDRPNGAILTENQSFIPPLLAVGAVHHHLIRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAI 234 (809)
T ss_dssp HHHHHHHHTTCSEEEEESSGGGCCCCTTEEECCHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHCCCcEEEEeccccccccCCCccchhHHHHHHHHHHHHHHcCCCceeeeeeehHHHHHHHHhHHHHhccHHHH
Confidence 45778899999999999764 211221 235566666666554 22454 555788999999999999999999
Q ss_pred EEchHHHH--HHh---------hcC-------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 286 FIGRPVVY--SLA---------AEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 286 ~ig~~~l~--~~~---------~~G-------~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
-=.-++-. .+. ..| ++.+.++.+.+.++|.+.|..+|.++++.-++..+.
T Consensus 235 nPYLA~eti~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ny~kAi~kGLLKIMSKMGISTl~SYrGaqiF 302 (809)
T d1ofda2 235 CPYLALESVRQWWLDEKTQKLMENGRLDRIDLPTALKNYRQSVEAGLFKILSKMGISLLASYHGAQIF 302 (809)
T ss_dssp ECHHHHHHHHHHHSCHHHHHHHTTSSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCCE
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhccCcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchh
Confidence 73322211 111 011 246889999999999999999999999988776554
|
| >d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.01 E-value=1.3 Score=38.26 Aligned_cols=123 Identities=12% Similarity=0.053 Sum_probs=79.5
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCC------CCc---------hhHHhhhhcCCCCcCcccccCCCCCCchHHHHH
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPR------LGR---------READIKNRFTLPPFLTLKNFQGLDLGKMDEDVK 197 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~------~g~---------r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~ 197 (349)
.|.+...++++.+.++|++++-+.+=.+. .+. ...++...+ ..+.+.|..+.
T Consensus 28 G~~~~ak~lI~~A~~sGAdaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~-------------els~~~~~~l~ 94 (295)
T d1vlia2 28 GKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSM-------------EMPAEWILPLL 94 (295)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGB-------------SSCGGGHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEeeecchhceecccccccccCcccccccccchhe-------------ecCHHHhhhHH
Confidence 46677889999999999999855431110 000 000010000 12233377777
Q ss_pred HHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 018919 198 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 277 (349)
Q Consensus 198 ~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka 277 (349)
...+..++++++ .+.+.+.+..+.+.|++++.+... .....+.|.++.+. ..||+.+-|-.+-.++.++
T Consensus 95 ~~~k~~gi~~~~-s~fd~~s~~~l~~l~~~~iKIaS~-------d~~n~~Li~~i~k~---~kpviistG~~~~~ei~~~ 163 (295)
T d1vlia2 95 DYCREKQVIFLS-TVCDEGSADLLQSTSPSAFKIASY-------EINHLPLLKYVARL---NRPMIFSTAGAEISDVHEA 163 (295)
T ss_dssp HHHHHTTCEEEC-BCCSHHHHHHHHTTCCSCEEECGG-------GTTCHHHHHHHHTT---CSCEEEECTTCCHHHHHHH
T ss_pred HHhhhcccceee-ecccceeeeeecccCcceeEeccc-------ccccHHHHHHHHhc---CCchheechhhhhhhHHHH
Confidence 777777888765 456788899999999999999532 12235666665543 6789988888898888777
Q ss_pred HH
Q 018919 278 LA 279 (349)
Q Consensus 278 l~ 279 (349)
+.
T Consensus 164 ~~ 165 (295)
T d1vlia2 164 WR 165 (295)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.86 E-value=0.17 Score=46.02 Aligned_cols=68 Identities=12% Similarity=0.171 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+.+..+.++|+|.+++....|. .....+.+..+++.. .+++|| .|.+.|++.+.+++..|||+|-+|-
T Consensus 122 ~~~~~l~~agv~vi~id~a~g~----~~~~~~~i~~ik~~~-~~~~iI-aGnVaT~e~a~~L~~aGAD~VkVGi 189 (378)
T d1jr1a1 122 YRLDLLALAGVDVVVLDSSQGN----SIFQINMIKYMKEKY-PNLQVI-GGNVVTAAQAKNLIDAGVDALRVGM 189 (378)
T ss_dssp HHHHHHHHHTCCEEEECCSSCC----SHHHHHHHHHHHHHS-TTCEEE-EEEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHhhccceEeeeccCcc----chhhHHHHHHHHHHC-CCCcee-ecccccHHHHHHHHHhCCCEEeecc
Confidence 4467788999999999654331 123345566666554 356665 7889999999999999999998874
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=91.85 E-value=0.77 Score=39.08 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=50.4
Q ss_pred ecCHHHHHHHHHcCCCEEEEec-CCCCCCCCchhhHHHHHHHHHHhcC-CC-cEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 212 VLTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQG-RI-PVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~-~gg~~~~~~~~~~~~l~~i~~~~~~-~i-pvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
..++..++.+..+|.|+|++.. ||. -+++.+..+..++.. .+ |++=.. -.++..+.++|.+||++|++=
T Consensus 24 ~~~p~~~ei~a~~G~Dfv~iD~EHg~-------~~~~~~~~~i~a~~~~g~~~~VRvp-~~~~~~i~~~LD~Ga~GIivP 95 (253)
T d1dxea_ 24 LSNPISTEVLGLAGFDWLVLDGEHAP-------NDISTFIPQLMALKGSASAPVVRVP-TNEPVIIKRLLDIGFYNFLIP 95 (253)
T ss_dssp SCSHHHHHHHTTSCCSEEEEESSSSS-------CCHHHHHHHHHHTTTCSSEEEEECS-SSCHHHHHHHHHTTCCEEEES
T ss_pred CCCHHHHHHHHcCCCCEEEEecccCC-------CChhHHHHHHHHHhccCCCceecCC-CCCHHHHHHHHhcCccEEEec
Confidence 3688999999999999999975 443 344555555555432 34 444333 478899999999999999885
Q ss_pred h
Q 018919 289 R 289 (349)
Q Consensus 289 ~ 289 (349)
.
T Consensus 96 ~ 96 (253)
T d1dxea_ 96 F 96 (253)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.78 E-value=1.1 Score=38.16 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=45.6
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
.|.+...+.++...+.|++.|.|+++.|.. . ..+. ...++.+.+.+++|+.+ .
T Consensus 37 ~d~d~~~~~A~~qv~~GA~iLDIn~~~~~~--~-----------------------e~~~m~~li~~l~~~~d~PlsI-D 90 (260)
T d3bofa1 37 GNEEIVIKEAKTQVEKGAEVLDVNFGIESQ--I-----------------------DVRYVEKIVQTLPYVSNVPLSL-D 90 (260)
T ss_dssp TCSHHHHHHHHHHHHTTCSEEEEECSSGGG--S-----------------------CHHHHHHHHHHHHHHTCSCEEE-E
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeecCCchh--h-----------------------hHHHHHHHHHHHHhcCCCCccc-c
Confidence 466777788888888999999998765421 0 0111 23466666666777765 3
Q ss_pred ecCHHHHHHHHHc--CCCEE
Q 018919 212 VLTAEDARIAVQA--GAAGI 229 (349)
Q Consensus 212 v~~~~~a~~a~~~--G~d~I 229 (349)
..+++.++.++++ |++.|
T Consensus 91 T~~~~v~eaaLk~~~G~~iI 110 (260)
T d3bofa1 91 IQNVDLTERALRAYPGRSLF 110 (260)
T ss_dssp CCCHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHhcCcceE
Confidence 4566666666666 66544
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=91.77 E-value=1.3 Score=36.92 Aligned_cols=119 Identities=8% Similarity=-0.004 Sum_probs=77.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++.+.+.++++.+.|++++-+.+... +.+. .+.|+.+|+.. ++.|.+
T Consensus 19 ~~~~~~~~~~~~~~~~Gf~~~Kikvg~~----------------------------~~~~di~~v~~vr~~~g~~~~l~v 70 (247)
T d1tzza1 19 KGLSMLRGEMRGYLDRGYNVVKMKIGGA----------------------------PIEEDRMRIEAVLEEIGKDAQLAV 70 (247)
T ss_dssp -CHHHHHHHHHHHHTTTCSEEEEECSSS----------------------------CHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCC----------------------------CHHHHHHHHHHHHHhccCCceEEe
Confidence 4677778888888899999998876431 1112 45688888876 344543
Q ss_pred EEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC-
Q 018919 210 KGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA- 282 (349)
Q Consensus 210 K~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA- 282 (349)
=.- -+.++| +.+.+.+...+= -...+..++.+.++++.. .+||.++-.+.+..|...++..||
T Consensus 71 Dan~~~~~~~Ai~~~~~l~~~~i~wiE--------eP~~~~d~~~~~~l~~~~--~ipia~gE~~~~~~~~~~~i~~~a~ 140 (247)
T d1tzza1 71 DANGRFNLETGIAYAKMLRDYPLFWYE--------EVGDPLDYALQAALAEFY--PGPMATGENLFSHQDARNLLRYGGM 140 (247)
T ss_dssp ECTTCCCHHHHHHHHHHHTTSCCSEEE--------CCSCTTCHHHHHHHTTTC--CSCEEECTTCCSHHHHHHHHHHSCC
T ss_pred cccccccchhHHHHHhhcchhhhhhhc--------cccccccchhhhhhhhcc--ccccccchhhhhhHHHHHHHHccCC
Confidence 221 345554 444445544331 001122466677776655 799999999999999999999997
Q ss_pred ----CEEEEch
Q 018919 283 ----SGIFIGR 289 (349)
Q Consensus 283 ----~~V~ig~ 289 (349)
|.+++.-
T Consensus 141 ~~~~Di~~~d~ 151 (247)
T d1tzza1 141 RPDRDWLQFDC 151 (247)
T ss_dssp CTTTCEECCCT
T ss_pred cCcceeEeecc
Confidence 6888754
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=91.77 E-value=0.19 Score=46.21 Aligned_cols=96 Identities=16% Similarity=0.241 Sum_probs=63.5
Q ss_pred ceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccC-CCCCCc---h-HHHHHH
Q 018919 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ-GLDLGK---M-DEDVKW 198 (349)
Q Consensus 124 ~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~-~~~~~~---~-~~~i~~ 198 (349)
+.|+.|-+.-+.+...+.++.+.+.|++++.++-..... .. .....+.. |+-.+. . .+.|++
T Consensus 268 pi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~--~~-----------~~~~~~~~GGlSG~~l~~~al~~v~~ 334 (409)
T d1tv5a1 268 LVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQI--ND-----------IKSFENKKGGVSGAKLKDISTKFICE 334 (409)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCC--CC-----------CGGGTTCCSEEEEHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCCchhhHHHHHHHHhccccceecccccccc--cc-----------cccccccCCcccchhHHHHHHHHHHH
Confidence 567777665566678889999999999998765433211 00 00001111 110011 1 467889
Q ss_pred HHHhcC--CcE-EEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 199 LQTITK--LPI-LVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 199 i~~~~~--~pv-~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+++.++ +|| .+.+|.+.+||.+.+.+||+.|.+.
T Consensus 335 v~~~~~~~ipIIGvGGI~s~~Da~e~i~AGAs~VQv~ 371 (409)
T d1tv5a1 335 MYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLY 371 (409)
T ss_dssp HHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEES
T ss_pred HHHHcCCCceEEEECCCCCHHHHHHHHHcCCCHHhhh
Confidence 988884 885 5667899999999999999999984
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=91.60 E-value=0.18 Score=42.59 Aligned_cols=80 Identities=23% Similarity=0.346 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH----------HHHHHHhCCCEE
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGI 285 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d----------v~kal~~GA~~V 285 (349)
+.++.+.+.|+++++.+.+ .+..+++.. .+-.++.+.||+-..+ ..+|+..|||.+
T Consensus 146 ~~~~~~~~~g~~g~v~s~~-------------~~~~~r~~~-~~~~~ivtPGI~~~~~~~~dq~r~~tp~~a~~~GaD~i 211 (237)
T d1dbta_ 146 HYSKQAEESGLDGVVCSVH-------------EAKAIYQAV-SPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAI 211 (237)
T ss_dssp HHHHHHHHTTCSEEECCGG-------------GHHHHTTTS-CTTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEE
T ss_pred HHHHhhhhcCcceeecchh-------------hhhhhcccc-ccceeEeccccccCCCCCCCceeeCCHHHHHHcCCCEE
Confidence 3456677899999877532 122233322 2445788888876432 467888999999
Q ss_pred EEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 286 FIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 286 ~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
.|||+++.+ +...+..+.+++|++
T Consensus 212 IVGR~I~~s------~dP~~aa~~i~~~ie 235 (237)
T d1dbta_ 212 VVGRSITKA------EDPVKAYKAVRLEWE 235 (237)
T ss_dssp EECHHHHTS------SCHHHHHHHHHHHHH
T ss_pred EECCcccCC------CCHHHHHHHHHHHHc
Confidence 999999852 223355667777664
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=91.60 E-value=2.1 Score=36.55 Aligned_cols=138 Identities=10% Similarity=0.011 Sum_probs=84.3
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhh--hhcCCCCcCcccccCC-----CCCCchHHHHHHHHHhcCC
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK--NRFTLPPFLTLKNFQG-----LDLGKMDEDVKWLQTITKL 205 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~--~~~~~p~~~~~~~~~~-----~~~~~~~~~i~~i~~~~~~ 205 (349)
.|.+...++++.+.++|++++-+..-.+ .++. +............... ..+...|..+....+..++
T Consensus 31 Gd~~~a~~lI~~a~~sGadaVKfQ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~l~~~~k~~~i 104 (280)
T d2zdra2 31 GSLKTAFEMVDAAYNAGAEVVKHQTHIV------EDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGM 104 (280)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEEECCH------HHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCEEEecCccc------chhcccccccccccccccccccccccccccchhhHHHHHHHHhcCC
Confidence 4667788999999999999986554211 0000 0000000000000000 0111124556666666688
Q ss_pred cEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH----hC
Q 018919 206 PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA----LG 281 (349)
Q Consensus 206 pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~----~G 281 (349)
++++ .+.+.+.+..+.+.|++.+.+... ....+..|.++.+ .+.||+.+-|..+-.++.+++. .+
T Consensus 105 ~~~~-s~fd~~s~~~~~~~~~~~~KIaS~-------d~~n~~Li~~i~k---~~kpiiiStG~s~~~EI~~av~~~~~~~ 173 (280)
T d2zdra2 105 IFIS-TPFSRAAALRLQRMDIPAYKIGSG-------ECNNYPLIKLVAS---FGKPIILSTGMNSIESIKKSVEIIREAG 173 (280)
T ss_dssp EEEE-EECSHHHHHHHHHHTCSCEEECGG-------GTTCHHHHHHHHT---TCSCEEEECTTCCHHHHHHHHHHHHHHT
T ss_pred cccc-ccchhhcccccccccccceeccch-------hccccHhhhhhhh---ccCceeecccccchhHhhhhhhhhhhcc
Confidence 8765 456788899999999999999532 1224566666654 2689999999999999998887 37
Q ss_pred CCEEEE
Q 018919 282 ASGIFI 287 (349)
Q Consensus 282 A~~V~i 287 (349)
.+.+.+
T Consensus 174 ~~~~ll 179 (280)
T d2zdra2 174 VPYALL 179 (280)
T ss_dssp CCEEEE
T ss_pred ccceEE
Confidence 765554
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.52 E-value=3.1 Score=34.36 Aligned_cols=83 Identities=20% Similarity=0.170 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC
Q 018919 193 DEDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 270 (349)
++..+++++.+++||..... .+..+.+.+++.| +|.+.+.-. .-+|......+..+++.. +++++..+...+
T Consensus 96 ~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~~~d~v~~d~~----~~GGit~~~~i~~~A~~~--gi~v~~h~~~~~ 169 (243)
T d1r0ma1 96 LVDHAELARRIRTPLCLDESVASASDARKALALGAGGVINLKVA----RVGGHAESRRVHDVAQSF--GAPVWCGGMLES 169 (243)
T ss_dssp SHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSEEEECTT----TTTSHHHHHHHHHHHHHT--TCCEEECCCCCC
T ss_pred hHHHHHHhhcCCcccccccchhhhhhhhhhhhcccccceecccc----eeccHHHHHHHHHHHHHC--CCceeccccccc
Confidence 67899999999999987553 5778888887766 788877431 123444455555555554 789988877777
Q ss_pred HHHHHHHHHhC
Q 018919 271 GTDVFKALALG 281 (349)
Q Consensus 271 ~~dv~kal~~G 281 (349)
+--....+.+.
T Consensus 170 ~i~~~a~~h~~ 180 (243)
T d1r0ma1 170 GIGRAHNIHLS 180 (243)
T ss_dssp HHHHHHHHHHT
T ss_pred chhhhHHHHHH
Confidence 66655555444
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=91.29 E-value=0.8 Score=38.17 Aligned_cols=109 Identities=20% Similarity=0.226 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC-ch---HHHHHHHHHhcCCcEEEEEecC
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG-KM---DEDVKWLQTITKLPILVKGVLT 214 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~-~~---~~~i~~i~~~~~~pv~vK~v~~ 214 (349)
.+.++++.+.|++.+.+..-.. +. .+. .+ .+.+..+.+.++.++++-
T Consensus 33 ~~~v~~al~~Gv~~iqlR~K~~---------------~~----------~~~~~~~~~a~~l~~lc~~~~~~liIn---- 83 (226)
T d2tpsa_ 33 VTVVQKALKGGATLYQFREKGG---------------DA----------LTGEARIKFAEKAQAACREAGVPFIVN---- 83 (226)
T ss_dssp HHHHHHHHHHTCSEEEECCCST---------------TC----------CCHHHHHHHHHHHHHHHHHHTCCEEEE----
T ss_pred HHHHHHHHHCCCCEEEEcCCCc---------------cc----------hhHHHHHHHHHHHHHHHHHhCCeEEEc----
Confidence 4678888889999987643110 00 011 11 244677777789999863
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
++...|.+.|+|+|.+... +. . +.++++..+ .. + ..+.+++.+++.++...|||.|.+|.-|
T Consensus 84 -d~~~lA~~~~adGvHl~~~-----d~---~---~~~~r~~~~-~~-i-ig~S~h~~~e~~~a~~~g~DYi~~gpvf 145 (226)
T d2tpsa_ 84 -DDVELALNLKADGIHIGQE-----DA---N---AKEVRAAIG-DM-I-LGVSAHTMSEVKQAEEDGADYVGLGPIY 145 (226)
T ss_dssp -SCHHHHHHHTCSEEEECTT-----SS---C---HHHHHHHHT-TS-E-EEEEECSHHHHHHHHHHTCSEEEECCSS
T ss_pred -CCHHHHhhccCCEEEeccc-----cc---h---hhhhhhccc-ce-e-eeeeccchHHHHHHHhCcCCeEEEeccc
Confidence 3345677789999988422 11 1 123334443 32 3 3344789999999999999999999754
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=91.25 E-value=0.48 Score=40.27 Aligned_cols=71 Identities=27% Similarity=0.309 Sum_probs=52.0
Q ss_pred ecCHHHHHHHHHcCCCEEEEecC---CCCCCCCchhhHHHHHHHHHHhcCCCcEEEe-----cCC-CCH-------HHHH
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLD-----GGV-RRG-------TDVF 275 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~---gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~-----GGI-~~~-------~dv~ 275 (349)
+.++++|..|.+.|||-|-+-.. ||. -|+...+..+++.+ ++||.+- |+. .|. .|+.
T Consensus 7 v~s~~~a~~A~~~GAdRIELc~~l~~GGl-----TPS~g~i~~~~~~~--~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~ 79 (247)
T d1twda_ 7 CYSMECALTAQQNGADRVELCAAPKEGGL-----TPSLGVLKSVRQRV--TIPVHPIIRPRGGDFCYSDGEFAAILEDVR 79 (247)
T ss_dssp ESSHHHHHHHHHTTCSEEEECBCGGGTCB-----CCCHHHHHHHHHHC--CSCEEEBCCSSSSCSCCCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEEEEcCCcccCCC-----CCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998532 332 35667777777776 7888764 332 333 3566
Q ss_pred HHHHhCCCEEEEch
Q 018919 276 KALALGASGIFIGR 289 (349)
Q Consensus 276 kal~~GA~~V~ig~ 289 (349)
.+..+||++|.+|-
T Consensus 80 ~~k~~G~dGvV~G~ 93 (247)
T d1twda_ 80 TVRELGFPGLVTGV 93 (247)
T ss_dssp HHHHTTCSEEEECC
T ss_pred HHHHcCCCeEEEEE
Confidence 67779999999994
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.94 E-value=4.1 Score=34.59 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=91.1
Q ss_pred CChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHhh------CCCceEEEEeecCChhHHHHHHHHHHHcCCCEEE
Q 018919 86 HPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (349)
Q Consensus 86 ~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~~------~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~ 154 (349)
+.++-..+++-..+.|+.+++ + ++...+.+|..+. ...+.++.+.. .+.+.+.++++.+++.|++++.
T Consensus 18 D~~~~~~~i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~~~~~i~gv~~-~st~~~i~~a~~a~~~Ga~~~~ 96 (293)
T d1w3ia_ 18 DKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNKIIFQVGG-LNLDDAIRLAKLSKDFDIVGIA 96 (293)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSCEEEECCC-SCHHHHHHHHHHGGGSCCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeechhhhhCCHHHHHHHHHHHHhhcccccccccc-chhhhhhhhhhhhhhhcccccc
Confidence 334445777777788877664 2 2234566663321 11345555443 4556677888899999999987
Q ss_pred EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-------cCHHHHHHHHHcCC
Q 018919 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV-------LTAEDARIAVQAGA 226 (349)
Q Consensus 155 i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v-------~~~~~a~~a~~~G~ 226 (349)
+.. |.. +. + .+.+ ..+..+.+.+.+++|+++=.. .+++.+++. -.+
T Consensus 97 ~~~--P~~----------~~-~-----------~~~~~i~~~f~~Ia~a~~~pi~lYn~P~~~g~~l~~~~~~~l--~ni 150 (293)
T d1w3ia_ 97 SYA--PYY----------YP-R-----------MSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKEI--GCF 150 (293)
T ss_dssp EEC--CCS----------CS-S-----------CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH--CCE
T ss_pred ccc--cch----------hc-c-----------chHHHHHHHHHHHHHhhccceeeeccccccccccchhhHHhh--hhh
Confidence 642 210 00 0 0111 256678888888999998654 233443332 112
Q ss_pred CEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 227 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 227 d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
-+|.-+ . ..+....++.+. .+++.|+ +|. ...+..++.+||++.+.|..
T Consensus 151 ~giK~s--------s--~d~~~~~~~~~~-~~~~~v~-~G~---d~~~~~~~~~Ga~G~is~~~ 199 (293)
T d1w3ia_ 151 TGVKDT--------I--ENIIHTLDYKRL-NPNMLVY-SGS---DMLIATVASTGLDGNVAAGS 199 (293)
T ss_dssp EEEEEC--------C--SCHHHHHHHHHH-CTTSEEE-ECC---STTHHHHHHTTCCEEECGGG
T ss_pred hccccc--------c--ccHHHHHHHHhh-ccceecc-ccc---ccchhhhhccCCceeeeccc
Confidence 222211 1 123334444433 3456555 442 13467889999999998864
|
| >d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]
Probab=90.91 E-value=4.5 Score=35.04 Aligned_cols=170 Identities=17% Similarity=0.158 Sum_probs=93.2
Q ss_pred ChhhHHHHHHHHHcCCeEEec-----CCCCCCHHHHHh--------h----CC-CceEEEEeecCChhHHHHHHHHHHHc
Q 018919 87 PEGEYATARAASAAGTIMTLS-----SWSTSSVEEVAS--------T----GP-GIRFFQLYVYKDRNVVAQLVRRAERA 148 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~~~-----~~~~~~~e~i~~--------~----~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~ 148 (349)
|+.-..++......|+.++=- +...++++|..+ + .. ..+.++| ..+.+.+.+.++.++++
T Consensus 34 ~~~~a~~~~~~~~GGvD~IKDDe~la~~~~~p~~eRv~~~~~a~~~a~~~TG~~~lYa~Ni--T~~~~em~~ra~~a~~~ 111 (307)
T d1geha1 34 PEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANI--TADLLEMEQRLEVLADL 111 (307)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCTTCCCCTTSCHHHHHHHHHHHHHHHHHHTCSCCEEECBC--CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeeeCCccccCCCCCcHHHHHHHHHHHHHHHHHHhCCeeEEEEEc--cCChHHHHHHHHHHHHc
Confidence 333446888889999987643 223345665321 1 11 2233333 24667788888999999
Q ss_pred CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHH---hcCCcEEEEEe------c------
Q 018919 149 GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQT---ITKLPILVKGV------L------ 213 (349)
Q Consensus 149 G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~---~~~~pv~vK~v------~------ 213 (349)
|++++.|++... + |..++.+++ ..++||..--. .
T Consensus 112 G~~~vmi~~~~~-----------G--------------------~~al~~lr~~~~~~~lpIh~H~A~~ga~~~~~~~Gi 160 (307)
T d1geha1 112 GLKHAMVDVVIT-----------G--------------------WGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGI 160 (307)
T ss_dssp TCCEEEEEHHHH-----------C--------------------HHHHHHHHHHHHHTTCEEEEECTTGGGTSSCTTSEE
T ss_pred CCCEEEEecccc-----------c--------------------hHHHHHHHHhhccCCeEEEeccccceeeecCccCCc
Confidence 999998876321 0 344555543 45778765421 1
Q ss_pred C-HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-------------------cCCCcEEEecCCCCHHH
Q 018919 214 T-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-------------------QGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 214 ~-~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-------------------~~~ipvia~GGI~~~~d 273 (349)
+ .-..+.+.-+|+|.|.+.+.|+..+.+.........++.+.. +.-+|+ .+||++= ..
T Consensus 161 s~~vl~kl~Rl~GaD~ih~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~Pv-~sgG~~~-~~ 238 (307)
T d1geha1 161 SMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPT-SSGGLHP-GN 238 (307)
T ss_dssp CHHHHHHHHHHHTCSEEECCCC-----CTHHHHHHHHHHHHHCSEECCCTTCCSCCCEECTTCCCCEEE-EESSCCT-TT
T ss_pred cHHHHHHHHHHhCcCceeccccccccccCCHHHHHHHHHHHhhhhccccccccceecccccccCCcccc-cCCCCcH-HH
Confidence 1 133567777999999998775543333332222222222110 112344 5666654 45
Q ss_pred HHHHHH-hCCCEEEE-chHH
Q 018919 274 VFKALA-LGASGIFI-GRPV 291 (349)
Q Consensus 274 v~kal~-~GA~~V~i-g~~~ 291 (349)
+-+.+. .|-|.+.. |..+
T Consensus 239 vp~~~~~~G~Dvil~~GGgi 258 (307)
T d1geha1 239 IQPVIEALGTDIVLQLGGGT 258 (307)
T ss_dssp HHHHHHHTCSSSEEECSHHH
T ss_pred HHHHHHHhCCcEEEEcCccc
Confidence 666666 69887665 4444
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=90.76 E-value=0.32 Score=42.50 Aligned_cols=93 Identities=22% Similarity=0.337 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCC----C-CCCCchhh----HHHHHHHHHHhcCCCcEEE
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA----R-QLDYVPAT----IMALEEVVKATQGRIPVFL 264 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg----~-~~~~~~~~----~~~l~~i~~~~~~~ipvia 264 (349)
+.++++.+. +-|+.+-++-++-.|+.+.++|.+++.+|+.+- . ..|.+.-+ .+.+.+|.+.+ ++||++
T Consensus 6 ~~lr~ll~~-~~~~~~~~~~D~~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~--~~Pvi~ 82 (289)
T d1muma_ 6 KAFRAALTK-ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC--SLPLLV 82 (289)
T ss_dssp HHHHHHHHH-CSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHC--CSCEEE
T ss_pred HHHHHHHhC-CCCEEeecCCCHHHHHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhccc--CCCeee
Confidence 345555543 678988889999999999999999999986421 1 12434322 35566666666 899999
Q ss_pred ecCCCC---HHHH----HHHHHhCCCEEEEch
Q 018919 265 DGGVRR---GTDV----FKALALGASGIFIGR 289 (349)
Q Consensus 265 ~GGI~~---~~dv----~kal~~GA~~V~ig~ 289 (349)
|+.=-. +..+ .++...||.+|.|=-
T Consensus 83 D~d~GyG~~~~~v~~~v~~~~~aGvagi~iED 114 (289)
T d1muma_ 83 DADIGFGSSAFNVARTVKSMIKAGAAGLHIED 114 (289)
T ss_dssp ECTTCSSSSHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred cccccccccchHHHHHHHHHHHCCCCEEEecC
Confidence 875432 3333 445569999998853
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=90.71 E-value=3.6 Score=33.62 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=82.9
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++...+.++++.+.|++++-+.++.. +... .+.++.+|+.+ ++.+.+
T Consensus 14 ~~pe~~~~~a~~~~~~G~~~~Kikig~~----------------------------~~~~d~~~i~~ir~~~g~~~~i~v 65 (234)
T d1jpma1 14 NSPEEMAADAENYLKQGFQTLKIKVGKD----------------------------DIATDIARIQEIRKRVGSAVKLRL 65 (234)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECSSS----------------------------CHHHHHHHHHHHHHHHGGGSEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCC----------------------------CHHHHHHHHHHHHHHcCchhhhhh
Confidence 4678888889999999999998877431 1111 45677888776 344443
Q ss_pred EE--ecCHHHHHH----HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KG--VLTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~--v~~~~~a~~----a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
=. ..+.++|.. +.+.+.+...+-- ...+.+++.+.++++.. ++||..+.-+.+..+..+++..| +
T Consensus 66 D~N~~~~~~~a~~~~~~le~~~~~i~~~Ee------P~~~~d~~~~~~l~~~~--~~pia~gE~~~~~~~~~~~i~~~~~ 137 (234)
T d1jpma1 66 DANQGWRPKEAVTAIRKMEDAGLGIELVEQ------PVHKDDLAGLKKVTDAT--DTPIMADESVFTPRQAFEVLQTRSA 137 (234)
T ss_dssp ECTTCSCHHHHHHHHHHHHHTTCCEEEEEC------CSCTTCHHHHHHHHHHC--SSCEEESTTCSSHHHHHHHHHTTCC
T ss_pred hcccccchHHHHHHHHHHHhccCceeeecC------CccccCHHHHHHhhccc--cceeecccccccchhhhhhhccCCc
Confidence 11 135555533 3445555444421 11223567788888776 79999999999999999999987 8
Q ss_pred CEEEEchHH
Q 018919 283 SGIFIGRPV 291 (349)
Q Consensus 283 ~~V~ig~~~ 291 (349)
|.+++.-..
T Consensus 138 d~v~~d~~~ 146 (234)
T d1jpma1 138 DLINIKLMK 146 (234)
T ss_dssp SEEEECHHH
T ss_pred CeEEEeeec
Confidence 999987543
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=90.59 E-value=4 Score=33.86 Aligned_cols=127 Identities=14% Similarity=0.090 Sum_probs=81.9
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK 210 (349)
+++.+.+.++.+.+.|++++-+.+..+... . ..+.+. .+.++.+|+.. ++.|.+=
T Consensus 23 tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~------------~----------~~~~~~d~~~v~avR~~~G~~~~l~vD 80 (255)
T d1rvka1 23 TPEDYGRFAETLVKRGYKGIKLHTWMPPVS------------W----------APDVKMDLKACAAVREAVGPDIRLMID 80 (255)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCTTST------------T----------CCCHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCccc------------c----------ccCHHHHHHHHHHHHHHcCCccceecc
Confidence 467778888888889999999887654210 0 012222 56688888887 3455542
Q ss_pred Ee--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHhC-C
Q 018919 211 GV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALG-A 282 (349)
Q Consensus 211 ~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~kal~~G-A 282 (349)
.- -+.++| +.+.+.+...+= -...+..++.+.++++.. ++||.++.-+.+.. +..+++..| +
T Consensus 81 aN~~~~~~~A~~~~~~l~~~~l~~iE--------eP~~~~d~~~~~~l~~~~--~~pI~~~E~~~~~~~~~~~~i~~~~~ 150 (255)
T d1rvka1 81 AFHWYSRTDALALGRGLEKLGFDWIE--------EPMDEQSLSSYKWLSDNL--DIPVVGPESAAGKHWHRAEWIKAGAC 150 (255)
T ss_dssp CCTTCCHHHHHHHHHHHHTTTCSEEE--------CCSCTTCHHHHHHHHHHC--SSCEEECSSCSSHHHHHHHHHHTTCC
T ss_pred cccccccchhhhhhhhcccchhhhhc--------CCcccccHHHHHHHHHhc--ccceeehhhcccchhhhhhhhhhchh
Confidence 21 345544 455566665542 011223567788888877 79999999998865 667788865 6
Q ss_pred CEEEEchHHH
Q 018919 283 SGIFIGRPVV 292 (349)
Q Consensus 283 ~~V~ig~~~l 292 (349)
|.+++.-..+
T Consensus 151 dii~~d~~~~ 160 (255)
T d1rvka1 151 DILRTGVNDV 160 (255)
T ss_dssp SEEEECHHHH
T ss_pred hhcccccccc
Confidence 8888876543
|
| >d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=90.35 E-value=5.3 Score=34.89 Aligned_cols=169 Identities=9% Similarity=-0.030 Sum_probs=91.4
Q ss_pred ChhhHHHHHHHHHcCCeEEec-----CCCCCCHHHHHh--------h----CC-CceEEEEeecCChhHHHHHHHHHHHc
Q 018919 87 PEGEYATARAASAAGTIMTLS-----SWSTSSVEEVAS--------T----GP-GIRFFQLYVYKDRNVVAQLVRRAERA 148 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~~~-----~~~~~~~e~i~~--------~----~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~ 148 (349)
|+.-..++......|+.++=- +..-++++|..+ + .. ..+.+.+.. .+.+.+.+.++.+.++
T Consensus 32 p~~~a~~~~~~~~GGvD~IKDDE~l~~~~~~p~~eRv~~~~~av~~a~~eTG~~k~y~~nit~-~~~~em~~ra~~a~e~ 110 (325)
T d1wdda1 32 AKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATA-GTCEEMIKRAVFAREL 110 (325)
T ss_dssp HHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCC-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCceeeCCcccCCCCCcchHHHHHHHHHHHHHHHHhhCCceeEEeccCC-CCHHHHHHHHHHHHHc
Confidence 333346788888899887642 223345655321 1 11 234444422 3566777888888899
Q ss_pred CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHH---hcCCcEEEEEe------------c
Q 018919 149 GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQT---ITKLPILVKGV------------L 213 (349)
Q Consensus 149 G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~---~~~~pv~vK~v------------~ 213 (349)
|++++.+++... + |..++.+++ ..++||..--. .
T Consensus 111 G~~~~mi~~~~~-----------G--------------------~~a~~~l~~~~~~~~l~ih~Hra~~ga~tr~~~~Gi 159 (325)
T d1wdda1 111 GVPIVMHDYLTG-----------G--------------------FTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGM 159 (325)
T ss_dssp TCSEEEEEHHHH-----------C--------------------HHHHHHHHHHHHHHTCEEEEECTTHHHHHSCSSSEE
T ss_pred CCCEEEEecccc-----------c--------------------HHHHHHHHHhhhhcCceeecccccccccccCCCCCc
Confidence 999998876321 0 334444443 34677765321 1
Q ss_pred C-HHHHHHHHHcCCCEEEEecCCCCCCCCchhh-HHHHHHHHHHh----------------c-CCCcEEEecCCCCHHHH
Q 018919 214 T-AEDARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKAT----------------Q-GRIPVFLDGGVRRGTDV 274 (349)
Q Consensus 214 ~-~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~----------------~-~~ipvia~GGI~~~~dv 274 (349)
+ .-..+...-+|+|.+.+.+.+|+- ...... .+....+.+.+ . ..+--+.+||++ +..+
T Consensus 160 s~~vl~kl~RLaGaD~ih~~~~~Gk~-~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~q~~~~~k~~~Pv~sGG~~-~g~v 237 (325)
T d1wdda1 160 HFRVLAKALRMSGGDHIHAGTVVGKL-EGEREMTLGFVDLLRDDFIEKDRARGIFFTQDWVSMPGVIPVASGGIH-VWHM 237 (325)
T ss_dssp CHHHHHHHHHHHCCSEEECCCSSSSB-CCCHHHHHHHHHHHHCSEECCBGGGTBCSCEECTTCCCCEEEEESSCC-GGGH
T ss_pred cHHHHHHHHHHcCCCccccCccccCc-CCCHHHHHHHHHHHHhhhcccccccCccccCcccCCCCeeeecCCCCC-HhHH
Confidence 1 123566677999999987776642 222222 22222222100 0 123334566654 4556
Q ss_pred HHHHH-hCCCEEEEch
Q 018919 275 FKALA-LGASGIFIGR 289 (349)
Q Consensus 275 ~kal~-~GA~~V~ig~ 289 (349)
-..+. .|-|.|....
T Consensus 238 p~~~~~~G~D~il~~G 253 (325)
T d1wdda1 238 PALTEIFGDDSVLQFG 253 (325)
T ss_dssp HHHHHHHCSSSEEECS
T ss_pred HHHHHhcCCcEEEEcC
Confidence 56665 7888776543
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.35 E-value=1.2 Score=39.35 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE-
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG- 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~- 211 (349)
+.+...++++.+++.|.+.+.+....... ..|. .... ..... ....+++|+.+++||++-+
T Consensus 226 ~~~~~~~~~~~l~~~g~d~~~~~~g~~~~-----------~~~~-~~~~-----~~~~~~~~~~~~ik~~~~~pvi~~G~ 288 (330)
T d1ps9a1 226 TFAETVELAQAIEAAGATIINTGIGWHEA-----------RIPT-IATP-----VPRGAFSWVTRKLKGHVSLPLVTTNR 288 (330)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECBTTC-----------SSCS-SSTT-----SCTTTTHHHHHHHTTSCSSCEEECSS
T ss_pred CHHHHHHHHHHHHHhhhhhhhcccccccc-----------cccc-cCCC-----CcchhHHHHHHHHHhhCCceEEEeCC
Confidence 44667788899999999998876653211 0110 0000 01112 4567889999999988655
Q ss_pred ecCHHHHHHHHHcC-CCEEEE
Q 018919 212 VLTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 212 v~~~~~a~~a~~~G-~d~I~v 231 (349)
+.+++.|+.+++.| +|.|-+
T Consensus 289 i~~~~~ae~~l~~g~~D~V~~ 309 (330)
T d1ps9a1 289 INDPQVADDILSRGDADMVSM 309 (330)
T ss_dssp CCSHHHHHHHHHTTSCSEEEE
T ss_pred CCCHHHHHHHHHCCCcchhHh
Confidence 46899999999998 999877
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=90.20 E-value=1.9 Score=35.05 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
|+.++++++..++||++=|-.+.+.+..+.++|+++|.+.+
T Consensus 142 ~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~~~Ga~gvAvis 182 (206)
T d1xi3a_ 142 LEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVIS 182 (206)
T ss_dssp HHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESH
T ss_pred HHHHHHHHHhcCCCEEEECCCCHHHHHHHHHhCCCEEEEhH
Confidence 88899999999999887666788999999999999999853
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=90.02 E-value=1.1 Score=35.50 Aligned_cols=86 Identities=22% Similarity=0.138 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cCH-HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh---c-CCCcEEEec
Q 018919 193 DEDVKWLQTITKLPILVKGV-LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRIPVFLDG 266 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~~-~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~-~~ipvia~G 266 (349)
...+...-+..+.-|+--+. .++ +.+..+.+.++|.|.+|..-+. ....++++.+.+ + .+++|+ .|
T Consensus 54 ~~~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs~~~~-------~~~~~~~l~~~L~~~g~~~v~Vi-vG 125 (168)
T d7reqa2 54 QKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGG-------HLTLVPALRKELDKLGRPDILIT-VG 125 (168)
T ss_dssp HHHHHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEECSSC-------HHHHHHHHHHHHHHTTCTTSEEE-EE
T ss_pred HHHHHHHHHhCCcceecCCCcCcHHHHHHHHHccCCCEEEEecCccc-------chHHHHHHHHHHHhcCCCCeEEE-Ee
Confidence 45566555556777765443 355 5578889999999999975332 223333333333 2 357676 56
Q ss_pred CCCCHHHHHHHHHhCCCEEE
Q 018919 267 GVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 267 GI~~~~dv~kal~~GA~~V~ 286 (349)
|+--.+|..+...+|.+.|.
T Consensus 126 G~ip~~d~~~l~~~Gv~~iF 145 (168)
T d7reqa2 126 GVIPEQDFDELRKDGAVEIY 145 (168)
T ss_dssp ESCCGGGHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHhCCCCEEE
Confidence 66677888888889999875
|
| >d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: EAL domain-like family: EAL domain domain: Hypothetical protein YkuI, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.00 E-value=1.3 Score=37.15 Aligned_cols=92 Identities=8% Similarity=0.080 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCcEEEEEec-CHHHHHHHHHcCCCEEEEecCCCCCCCCchhh---HHHHHHHHHHhcCCCcEEEecCC
Q 018919 193 DEDVKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGV 268 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~-~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~---~~~l~~i~~~~~~~ipvia~GGI 268 (349)
.+.++.+++ .+.-+.+...- .......+.+.++|.|.++.+--+..+..+.. +..+.++++.+ +++||+.| |
T Consensus 135 ~~~l~~L~~-~G~~lalddfG~~~~sl~~L~~l~~d~IKld~s~i~~~~~~~~~~~~l~~l~~~a~~~--~~~vIaeG-V 210 (261)
T d2basa1 135 YHMLAYYRT-YGIKIAVDNIGKESSNLDRIALLSPDLLKIDLQALKVSQPSPSYEHVLYSISLLARKI--GAALLYED-I 210 (261)
T ss_dssp HHHHHHHHT-TTCEEEEEEETTTBCCHHHHHHHCCSEEEEECTTTC----CCHHHHHHHHHHHHHHHH--TCEEEEEC-C
T ss_pred HHHHHHHhh-cCceeeecCCccCccchhHHhhhhhhhhhcccccccccccchhhHHHHHHHHHHHHHc--CCEEEEEe-C
Confidence 455777776 48888887762 23445567778999999975422222222222 34444555555 68888876 9
Q ss_pred CCHHHHHHHHHhCCCEEEEch
Q 018919 269 RRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~ 289 (349)
-+.++...+..+|++.++ |.
T Consensus 211 E~~~~~~~l~~lg~d~~Q-G~ 230 (261)
T d2basa1 211 EANFQLQYAWRNGGRYFQ-GY 230 (261)
T ss_dssp CSHHHHHHHHHTTEEEEC-ST
T ss_pred CcHHHHHHHHHcCCCEEE-CC
Confidence 999999999999999987 54
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=90.00 E-value=4.4 Score=33.42 Aligned_cols=118 Identities=9% Similarity=0.049 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEEEe
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVKGV 212 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK~v 212 (349)
+...+.++.+++.|++++-+.++.. +++. .+.++.+++.. +..+.+=--
T Consensus 19 ~~~~e~~~~~~~~G~~~~KiKvG~~----------------------------~~~~Di~~v~~ir~~~g~~~~l~vDaN 70 (243)
T d1nu5a1 19 RDIDSALEMIETRRHNRFKVKLGAR----------------------------TPAQDLEHIRSIVKAVGDRASVRVDVN 70 (243)
T ss_dssp HHHHHHHHHHHTTSCSEEEEECSSS----------------------------CHHHHHHHHHHHHHHHGGGCEEEEECT
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCC----------------------------CHHHHHHHHHHHHHHhCcccceEEECC
Confidence 3445566666678999998876431 1222 45678888776 344443211
Q ss_pred --cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEE
Q 018919 213 --LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGI 285 (349)
Q Consensus 213 --~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V 285 (349)
-++++| +.+.+.+...+-= ...+..++.+.++++.. ++||..+--+++..|....+..| +|.+
T Consensus 71 ~~~~~~~A~~~~~~l~~~~~~~iEe--------P~~~~~~~~~~~l~~~~--~ipIa~gE~~~~~~~~~~~i~~~~~d~~ 140 (243)
T d1nu5a1 71 QGWDEQTASIWIPRLEEAGVELVEQ--------PVPRANFGALRRLTEQN--GVAILADESLSSLSSAFELARDHAVDAF 140 (243)
T ss_dssp TCCCHHHHHHHHHHHHHHTCCEEEC--------CSCTTCHHHHHHHHHHC--SSEEEESTTCCSHHHHHHHHHTTCCSEE
T ss_pred CCccchhHHHHHHHhcchhhhhhhh--------hhhhccccccccchhcc--ccccccccccccchhhhhcccccccccc
Confidence 355554 4455677665421 11223467788888877 79999999999999999999987 6899
Q ss_pred EEchHH
Q 018919 286 FIGRPV 291 (349)
Q Consensus 286 ~ig~~~ 291 (349)
++--..
T Consensus 141 ~~d~~~ 146 (243)
T d1nu5a1 141 SLKLCN 146 (243)
T ss_dssp EECHHH
T ss_pred cccccc
Confidence 988644
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.84 E-value=0.28 Score=44.33 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=48.1
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 214 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 214 ~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
..+.+..+.++|+|.|+++..-|+ .....+.++++++.+ ++|||+ |+|.+++-+. .+ .|||+|-+|
T Consensus 117 ~~~r~~~l~~aGvd~ivID~A~Gh----~~~~i~~lK~ir~~~--~~~vIa-GNVaT~e~~~-~l-~gaD~VkVG 182 (368)
T d2cu0a1 117 DIKRAIELDKAGVDVIVVDTAHAH----NLKAIKSMKEMRQKV--DADFIV-GNIANPKAVD-DL-TFADAVKVG 182 (368)
T ss_dssp CHHHHHHHHHTTCSEEEEECSCCC----CHHHHHHHHHHHHTC--CSEEEE-EEECCHHHHT-TC-TTSSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEecCcccc----hhhhhhhhhhhhhhc--ccceee-ccccCHHHHH-hh-hcCcceeec
Confidence 346677888999999999864332 122456677777665 688887 9999988763 33 699999988
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=89.79 E-value=2.8 Score=34.34 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK 210 (349)
+.+...+.++++.+.|++++-+.++.+. .+. .+.|+.+|+.. +..+.+
T Consensus 12 ~~~~~~e~~~~~~~~G~~~~KikvG~~~----------------------------~~~di~~i~~ir~~~g~~~~l~v- 62 (227)
T d2mnra1 12 GVKLATERAVTAAELGFRAVKTKIGYPA----------------------------LDQDLAVVRSIRQAVGDDFGIMV- 62 (227)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCSS----------------------------HHHHHHHHHHHHHHHCTTSEEEE-
T ss_pred cHHHHHHHHHHHHHCCCCEEEEccCCCC----------------------------HHHHHHHHHHHHHHhCCCcEEEE-
Confidence 3455667777888889999988875321 111 45688888876 455554
Q ss_pred Ee---cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC-
Q 018919 211 GV---LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA- 282 (349)
Q Consensus 211 ~v---~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA- 282 (349)
.. .++++| +.+.+.|...+-= ...+..++.+.++++.. ++||.++-.+.+..|..+++..|+
T Consensus 63 DaN~~~~~~~A~~~~~~l~~~~~~~iEe--------P~~~~~~~~~~~l~~~~--~ipia~gE~~~~~~~~~~~~~~~~~ 132 (227)
T d2mnra1 63 DYNQSLDVPAAIKRSQALQQEGVTWIEE--------PTLQHDYEGHQRIQSKL--NVPVQMGENWLGPEEMFKALSIGAC 132 (227)
T ss_dssp ECTTCSCHHHHHHHHHHHHHHTCSEEEC--------CSCTTCHHHHHHHHHTC--SSCEEECTTCCSHHHHHHHHHTTCC
T ss_pred eccccCChHHHHHHHHHhhhchhhhhcC--------cccccchhhhHHHHHHc--CCccccCceeEeechhhhhHhcCce
Confidence 22 345554 5566677655521 12233567788887766 799999999999999999999874
Q ss_pred CEEEEchH
Q 018919 283 SGIFIGRP 290 (349)
Q Consensus 283 ~~V~ig~~ 290 (349)
|.+++.-.
T Consensus 133 d~~~~d~~ 140 (227)
T d2mnra1 133 RLAMPDAM 140 (227)
T ss_dssp SEECCBTT
T ss_pred eeeecccc
Confidence 77777543
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=89.79 E-value=1.3 Score=39.64 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA 215 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~ 215 (349)
...++++.+++.|++.+.+...... ..+.+ ...-+.+|+.+++|++.-++.++
T Consensus 251 e~~~~~~~l~~~gvd~i~vs~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~vi~~G~~t~ 304 (363)
T d1vyra_ 251 DALYLIEELAKRGIAYLHMSETDLA--------------------------GGKPYSEAFRQKVRERFHGVIIGAGAYTA 304 (363)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCBTT--------------------------BCCCCCHHHHHHHHHHCCSEEEEESSCCH
T ss_pred HHHHHHHHHHhcCCeeeecccCCcc--------------------------CCccccHHHHHHHHHhcCceEEecCCCCH
Confidence 4566788888999999876532110 01112 45567788888999998888899
Q ss_pred HHHHHHHHcC-CCEEEE
Q 018919 216 EDARIAVQAG-AAGIIV 231 (349)
Q Consensus 216 ~~a~~a~~~G-~d~I~v 231 (349)
+.|+.+++.| +|.|.+
T Consensus 305 ~~ae~~l~~G~~DlV~~ 321 (363)
T d1vyra_ 305 EKAEDLIGKGLIDAVAF 321 (363)
T ss_dssp HHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHCCCcceehh
Confidence 9999999999 899987
|
| >d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.76 E-value=5.5 Score=34.20 Aligned_cols=165 Identities=13% Similarity=0.092 Sum_probs=95.6
Q ss_pred ChhhHHHHHHHHHcCCeEEec-----CCCCCCHHHHHh--------h----CC-CceEEEEeecCChhHHHHHHHHHHHc
Q 018919 87 PEGEYATARAASAAGTIMTLS-----SWSTSSVEEVAS--------T----GP-GIRFFQLYVYKDRNVVAQLVRRAERA 148 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~~~-----~~~~~~~e~i~~--------~----~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~ 148 (349)
|+.-..++..+...|+.++=- +...++++|..+ + .. ..+.++| ..+.+.+.+.++.+.+.
T Consensus 34 ~~~~a~~~~~~~~GGvD~IKDDe~l~~~~~~p~~eRv~~~~~a~~~a~~~tG~~~~Ya~Ni--t~~~~~m~~ra~~~~~~ 111 (291)
T d2d69a1 34 VEEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINI--TGPVNIMEKRAEMVANE 111 (291)
T ss_dssp HHHHHHHHHHHHHTTCSEEECCTTCSCBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEECBC--CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCceecCCccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeeEEEEec--cCCHHHHHHHHHHHHHc
Confidence 333447888889999987743 223345655321 1 11 2334444 24677888888999999
Q ss_pred CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHH---hcCCcEEEEEec------------
Q 018919 149 GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQT---ITKLPILVKGVL------------ 213 (349)
Q Consensus 149 G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~---~~~~pv~vK~v~------------ 213 (349)
|..++.+++... + |..++.+++ ..++||..--..
T Consensus 112 G~~~vmi~~~~~-----------G--------------------~~al~~l~~~~~~~~l~ih~Hra~~g~~~r~~~~Gi 160 (291)
T d2d69a1 112 GGQYVMIDIVVA-----------G--------------------WSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGI 160 (291)
T ss_dssp TCCEEEEEHHHH-----------C--------------------HHHHHHHHHHHHHHTCEEEEECTTTHHHHSCTTSEE
T ss_pred CCCEEEeccccc-----------c--------------------hHHHHHHHHhhccccceeeecccccceeccCCCCcc
Confidence 999998876321 0 444555543 345666654321
Q ss_pred C-HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc-------CCCcEEEecCCCCHHHHHHHHH-hCCCE
Q 018919 214 T-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-------GRIPVFLDGGVRRGTDVFKALA-LGASG 284 (349)
Q Consensus 214 ~-~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~-------~~ipvia~GGI~~~~dv~kal~-~GA~~ 284 (349)
+ .-..+...-+|+|.+.+.+.+|+- .... +.+.++.+.+. .-+|+ .+||++ +..+-+.+. .|-|.
T Consensus 161 s~~v~~kL~RLaGaD~ih~~~~~Gk~-~~~~---~e~~~~~~~~~~~~~~~k~~~Pv-~sGG~~-~~~vp~~~~~~G~D~ 234 (291)
T d2d69a1 161 TMLALAKAARMIGVDQIHTGTAVGKM-AGNY---EEIKRINDFLLSKWEHIRPVFPV-ASGGLH-PGLMPELIRLFGKDL 234 (291)
T ss_dssp CHHHHHHHHHHHTCSEEECCCCCSSS-CCCH---HHHHHHHHHHHSCCTTCCCCEEE-EESSCC-GGGHHHHHHHHCSCC
T ss_pred cHHHHHHHHHHcCCCeeecCCCCCCC-CCCH---HHHHHHHHHhccccccCCCceec-cccccc-hhhhHHHHHHcCCce
Confidence 1 123566667999999987776652 2222 23333333331 12444 467764 677777776 79888
Q ss_pred EEEchH
Q 018919 285 IFIGRP 290 (349)
Q Consensus 285 V~ig~~ 290 (349)
+....-
T Consensus 235 il~~GG 240 (291)
T d2d69a1 235 VIQAGG 240 (291)
T ss_dssp EEECHH
T ss_pred EEEcCc
Confidence 776543
|
| >d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: Macrophomate synthase species: Macrophoma commelinae [TaxId: 108330]
Probab=89.62 E-value=1.7 Score=37.76 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=47.6
Q ss_pred ecCHHHHHHHHHcCCCEEEEec-CCCCCCCCchhhHHHHHHHHHHhc-CC-CcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 212 VLTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQ-GR-IPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~-~gg~~~~~~~~~~~~l~~i~~~~~-~~-ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+.++..++.+..+|.|+|++.. ||. ....++..+-...+... .. .|++=..+ .+...+.++|.+||++|++=
T Consensus 49 ~~s~~~~e~~a~~g~D~v~iD~EHg~----~~~~~~~~~i~a~~~~~~~~~~~iVRvp~-~~~~~I~~~LD~Ga~GIivP 123 (299)
T d1izca_ 49 IPSTFVTKVLAATKPDFVWIDVEHGM----FNRLELHDAIHAAQHHSEGRSLVIVRVPK-HDEVSLSTALDAGAAGIVIP 123 (299)
T ss_dssp SCCHHHHHHHHHTCCSEEEEETTTSC----CCHHHHHHHHHHHHHHTTTCSEEEEECCT-TCHHHHHHHHHHTCSEEEET
T ss_pred CCCHHHHHHHHcCCCCEEEEcCCCCC----CCHHHHHHHHHHHHHhCCCCCCeEEeCCC-CChHHHHHHHHhCcCeeecc
Confidence 4789999999999999999985 442 12223332222233322 22 34544443 57788999999999999984
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.41 E-value=0.59 Score=41.88 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=61.7
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQT 201 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~ 201 (349)
.|.++.+.+..+.....+.++.+.++|++++.+. ++.. +... +..... + .......|..-+.. ...++++++
T Consensus 221 ~Pv~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~-nt~~-~~~~-~~~~~~--~--~~~gg~sG~~~~~i~l~~v~~v~~ 293 (367)
T d1d3ga_ 221 PAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVT-NTTV-SRPA-GLQGAL--R--SETGGLSGKPLRDLSTQTIREMYA 293 (367)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEEC-CCBS-CCCT-TCCCTT--T--TSSSEEEEGGGHHHHHHHHHHHHH
T ss_pred CccccccCcccchhhhhhhHHHHHhhhhheeecc-cccc-cccc-cccccc--c--ccccccccccchhhhHHHHHHHHH
Confidence 3677887765566677788889999999998763 3221 1110 000000 0 00000000000111 456777777
Q ss_pred hc--CCcE-EEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 202 IT--KLPI-LVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 202 ~~--~~pv-~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+ ++|| .+.+|.+.+||...+.+|||.|.+.
T Consensus 294 ~~~~~ipIig~GGI~s~~Da~e~i~aGAs~VQi~ 327 (367)
T d1d3ga_ 294 LTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLY 327 (367)
T ss_dssp HTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred HhCCCccEEEECCCCCHHHHHHHHHcCCCHHHhh
Confidence 66 5886 4556899999999999999999984
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=89.08 E-value=3.2 Score=34.26 Aligned_cols=82 Identities=21% Similarity=0.182 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC
Q 018919 193 DEDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 270 (349)
++.++++++.+++||..... .++.+++.+.+.| +|.+.+.-. .-+|......+..+++.. +++++..+-..+
T Consensus 96 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d~~----~~GGit~~~ki~~~a~~~--gi~v~~h~~~~~ 169 (244)
T d1wufa1 96 FVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLA----RVGGMSSALKIAEYCALN--EILVWCGGMLEA 169 (244)
T ss_dssp SHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTG----GGTSHHHHHHHHHHHHHT--TCEEEECCCCCC
T ss_pred hhhhhccccccccccccCccccchhhhhhhccccccceeecccc----cccchhhHHHHHHHHHHc--CCEEecCCCCCc
Confidence 67899999999999987654 6788899999888 688877432 112333333344444443 688877665666
Q ss_pred HHHHHHHHHh
Q 018919 271 GTDVFKALAL 280 (349)
Q Consensus 271 ~~dv~kal~~ 280 (349)
+--...++.+
T Consensus 170 ~i~~~~~~~~ 179 (244)
T d1wufa1 170 GVGRAHNIAL 179 (244)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 5554444443
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=88.99 E-value=1.5 Score=36.79 Aligned_cols=122 Identities=19% Similarity=0.160 Sum_probs=77.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG- 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~- 211 (349)
...+.+.++.+.+.+.|+.++++. |.+...++++.+.+++.+..=.
T Consensus 33 ~T~~~i~~lc~~A~~~~~~avcV~---------------------------------p~~v~~a~~~l~~s~v~v~tVig 79 (234)
T d1n7ka_ 33 ATEEDVRNLVREASDYGFRCAVLT---------------------------------PVYTVKISGLAEKLGVKLCSVIG 79 (234)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEC---------------------------------HHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEC---------------------------------cHhHHHHHHHhhcCCCceEEEEe
Confidence 355677888888888999988753 1112344555555566553211
Q ss_pred e----cC----HHHHHHHHHcCCCEEEEe-cCCCCCCCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHH-
Q 018919 212 V----LT----AEDARIAVQAGAAGIIVS-NHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKAL- 278 (349)
Q Consensus 212 v----~~----~~~a~~a~~~G~d~I~v~-~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal- 278 (349)
- .+ ..+++.|++.|||-|.+- |.+. . -...++.+.++.+.+ +..+.||..-+.-+.+.+.++-
T Consensus 80 FP~G~~~~~~k~~E~~~Ai~~GAdEID~Vin~~~--~--~~~~~~ev~~~~~~~~~~g~~lKVIlEt~~L~~~~i~~a~~ 155 (234)
T d1n7ka_ 80 FPLGQAPLEVKLVEAQTVLEAGATELDVVPHLSL--G--PEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVD 155 (234)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHTCCEEEECCCGGG--C--HHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHcCCCeEEEEechhh--h--hhhhHHHHHHHHHHHhccCceEEEEEeccccchHHHHHHHH
Confidence 1 11 367899999999999874 3222 0 111334444444433 2247899999999988887744
Q ss_pred ---HhCCCEEEEchHH
Q 018919 279 ---ALGASGIFIGRPV 291 (349)
Q Consensus 279 ---~~GA~~V~ig~~~ 291 (349)
..|||+|--++-|
T Consensus 156 ~a~~aGadFVKTSTG~ 171 (234)
T d1n7ka_ 156 SSRRAGADIVKTSTGV 171 (234)
T ss_dssp HHHHTTCSEEESCCSS
T ss_pred HHHHhhhhheeecccc
Confidence 5899999877654
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=88.90 E-value=6 Score=33.47 Aligned_cols=179 Identities=15% Similarity=0.166 Sum_probs=98.6
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe-----cCCCCCCHHHHHh-------h-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-----~~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|..+.|+.-..-.+.++-..+.+-..+.|+.+++ |++...+.||..+ . .. .+.++.... .+.+.+
T Consensus 8 ~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~s~~~~ 86 (295)
T d1hl2a_ 8 AALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGC-VSTAES 86 (295)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCC-SSHHHH
T ss_pred eeeECCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeecccc-chhhHH
Confidence 4555565322223444445677777778876543 2344567776322 1 22 345555443 456677
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~v----- 212 (349)
.+.++.+++.|++++.+.- |.. + +. .+.+..+..+++.+.. +.|+++-..
T Consensus 87 i~~a~~a~~~Gad~~~v~~--p~~----------~--~~----------~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g 142 (295)
T d1hl2a_ 87 QQLAASAKRYGFDAVSAVT--PFY----------Y--PF----------SFEEHCDHYRAIIDSADGLPMVVYNIPARSG 142 (295)
T ss_dssp HHHHHHHHHHTCSEEEEEC--CCS----------S--CC----------CHHHHHHHHHHHHHHHTTSCEEEEECHHHHC
T ss_pred HHHHHHHHhcCCceeeeee--ccc----------c--CC----------ChHHHHHHHHHHhcccCcCcccccccccccc
Confidence 8899999999999987642 210 0 00 0111134455554444 678887653
Q ss_pred --cCHHHHHHHHHc-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 --LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 --~~~~~a~~a~~~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+++...++.+. .+-+|.-+. .....+.++.+.. .++.++ .|+ ...+...+.+||++.+.|.
T Consensus 143 ~~l~~~~l~~L~~~pnvvgiK~~~----------~~~~~~~~~~~~~-~~~~v~-~g~---~~~~~~~~~~G~~G~is~~ 207 (295)
T d1hl2a_ 143 VKLTLDQINTLVTLPGVGALKQTS----------GDLYQMEQIRREH-PDLVLY-NGY---DEIFASGLLAGADGGIGST 207 (295)
T ss_dssp CCCCHHHHHHHHTSTTEEEEEECC----------CCHHHHHHHHHHC-TTCEEE-ECC---GGGHHHHHHHTCCEEEETT
T ss_pred cccccccccccccCcchhhhcccc----------ccHHHHHHHhhcC-CCceEe-ccc---HHHHhhhhccCCCceeccc
Confidence 467777777764 222333221 1223344444443 345444 443 2456778999999999998
Q ss_pred HH
Q 018919 290 PV 291 (349)
Q Consensus 290 ~~ 291 (349)
+.
T Consensus 208 ~n 209 (295)
T d1hl2a_ 208 YN 209 (295)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.89 E-value=1.2 Score=39.38 Aligned_cols=79 Identities=19% Similarity=0.042 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE-ecCH
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG-VLTA 215 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~-v~~~ 215 (349)
....+..+.+.+++.+.++....... .. ...+. . ...+.. ++..+.+|+.+++||++=+ +.++
T Consensus 239 ~~~~~~~l~~~~vd~~~vs~g~~~~~-~~------~~~~~-----~---~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~ 303 (340)
T d1djqa1 239 DGQKFVEMADSLVDMWDITIGDIAEW-GE------DAGPS-----R---FYQQGHTIPWVKLVKQVSKKPVLGVGRYTDP 303 (340)
T ss_dssp HHHHHHHHHTTTCSEEEEEESCSTTG-GG------TSCCT-----T---TCCTTTTHHHHHHHHTTCSSCEEECSCCCCH
T ss_pred hHHHHHHHHhhccceeeeeecccccc-cc------ccccc-----c---cCCccccHHHHHHHHHHcCCeEEEECCCCCH
Confidence 34455567788999998877542110 00 00010 0 112233 6778899999999998544 5689
Q ss_pred HHHHHHHHcC-CCEEEE
Q 018919 216 EDARIAVQAG-AAGIIV 231 (349)
Q Consensus 216 ~~a~~a~~~G-~d~I~v 231 (349)
+.|+++++.| +|.|-+
T Consensus 304 ~~a~~~l~~G~aDlV~~ 320 (340)
T d1djqa1 304 EKMIEIVTKGYADIIGC 320 (340)
T ss_dssp HHHHHHHHTTSCSBEEE
T ss_pred HHHHHHHHCCCccchhh
Confidence 9999999998 999977
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.74 E-value=3.5 Score=30.57 Aligned_cols=92 Identities=11% Similarity=0.169 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHH------cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQ------AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~------~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
.+.++.+-+.++... +....+.++|..+.+ ...|.|.+.-+-. +...++.+.++++....++|||+-.
T Consensus 14 ~~~l~~~L~~~g~~~-v~~a~~g~eAl~~l~~~~~~~~~~dlillD~~mP-----~~dG~el~~~ir~~~~~~~piI~lT 87 (128)
T d2r25b1 14 QEVIKRMLNLEGIEN-IELACDGQEAFDKVKELTSKGENYNMIFMDVQMP-----KVDGLLSTKMIRRDLGYTSPIVALT 87 (128)
T ss_dssp HHHHHHHHHHTTCCC-EEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCS-----SSCHHHHHHHHHHHSCCCSCEEEEE
T ss_pred HHHHHHHHHHcCCeE-EEEEcChHHHHHHHHhhhhccCCCCEEEEEeCCC-----CCCHHHHHHHHHHccCCCCeEEEEE
Confidence 455666666677642 234577777755443 3578888754311 1224677777776554578999999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 267 GVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 267 GI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
+-.+.++..+++.+||+... -.||
T Consensus 88 ~~~~~~~~~~~~~~G~~~~l-~KP~ 111 (128)
T d2r25b1 88 AFADDSNIKECLESGMNGFL-SKPI 111 (128)
T ss_dssp SCCSHHHHHHHHHTTCSEEE-ESSC
T ss_pred CCCCHHHHHHHHHcCCCEEE-ECCC
Confidence 99999999999999999874 5555
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=88.58 E-value=6.4 Score=33.39 Aligned_cols=184 Identities=18% Similarity=0.096 Sum_probs=91.1
Q ss_pred hHHHHHHHHHcCCeEEecCCC------------CCCHHHHH-------hhCCCceEEEEe-ecCChhHHHHHHHHHHHcC
Q 018919 90 EYATARAASAAGTIMTLSSWS------------TSSVEEVA-------STGPGIRFFQLY-VYKDRNVVAQLVRRAERAG 149 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~-------~~~~~~~~~Ql~-~~~~~~~~~~~~~~~~~~G 149 (349)
|..-|+.+++.|...+..+.. ..+++|+. ....-|..+=+- +..++....+.+++++++|
T Consensus 25 Da~SAr~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~v~~tv~~~~~aG 104 (275)
T d1s2wa_ 25 NGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRG 104 (275)
T ss_dssp SHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhcccCCceeEecccccccchHHHHHHHHHHHhc
Confidence 346788888889886654321 12333432 222223333220 1236677788999999999
Q ss_pred CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcE--EEEEe-----cCHHH---
Q 018919 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPI--LVKGV-----LTAED--- 217 (349)
Q Consensus 150 ~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv--~vK~v-----~~~~~--- 217 (349)
+.++.|. |...+ +| .++...+.. ...+... ...++..++.- +.++ +...= ...++
T Consensus 105 aagi~iE-Dq~~p-k~-----~~~~~~~~~------~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl~eai~ 171 (275)
T d1s2wa_ 105 VAGACLE-DKLFP-KT-----NSLHDGRAQ------PLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALK 171 (275)
T ss_dssp CCEEEEE-CBCC--------------CTTC------CBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHH
T ss_pred cceeEee-ccccc-cc-----ccccccccc------ccccHHHHHHHHHhhhhhccCcceeEEecchhhhhcCCHHHHHH
Confidence 9987652 32211 00 000000000 0111111 23344444432 3343 33221 12334
Q ss_pred -HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 218 -ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 218 -a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
++...++|||.|.+ +|.+. ..+.+..+.......+|+.+..+-.....+.+.-.+|.+.|..|...+++
T Consensus 172 R~~aY~eAGAD~vf~--~~~~~------~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~eL~~lGv~~v~~g~~~~~a 241 (275)
T d1s2wa_ 172 RAEAYRNAGADAILM--HSKKA------DPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRA 241 (275)
T ss_dssp HHHHHHHTTCSEEEE--CCCSS------SSHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCCEEEECSHHHHH
T ss_pred HHHHHHhcCCCeeee--ccccC------cHHHHHHHHHhhcCCCCEEEecccccccHHHHHHHcCCCEEEEchHHHHH
Confidence 46678999999988 33211 11223333333334688887654222222345556999999999877764
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=88.50 E-value=1.4 Score=37.78 Aligned_cols=92 Identities=24% Similarity=0.238 Sum_probs=60.1
Q ss_pred HHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC----CCCCchh----hHHHHHHHHHHhcCCCcEEEec
Q 018919 195 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPA----TIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 195 ~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~----~~~~~~~----~~~~l~~i~~~~~~~ipvia~G 266 (349)
.++++.+. +-++++-++-+.-.|+.+.++|++++.+++++-. ..|.+.- .++.+.+|.+.+ ++||++|.
T Consensus 7 ~lr~l~~~-~~~~~~p~~~Da~SAr~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~--~lPv~~D~ 83 (275)
T d1s2wa_ 7 QLKQMLNS-KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS--DVPILLDA 83 (275)
T ss_dssp HHHHHHHS-SSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC--SSCEEEEC
T ss_pred HHHHHHhC-CCCEEeecCcCHHHHHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhccc--CCceeEec
Confidence 35555543 5688888888999999999999999999865311 1233322 234455555555 79999875
Q ss_pred --CCCCHHHHH----HHHHhCCCEEEEch
Q 018919 267 --GVRRGTDVF----KALALGASGIFIGR 289 (349)
Q Consensus 267 --GI~~~~dv~----kal~~GA~~V~ig~ 289 (349)
|..++.++. ++...||.++.|=-
T Consensus 84 d~GyG~~~~v~~tv~~~~~aGaagi~iED 112 (275)
T d1s2wa_ 84 DTGYGNFNNARRLVRKLEDRGVAGACLED 112 (275)
T ss_dssp CSSCSSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccccccchHHHHHHHHHHHhccceeEeec
Confidence 455555554 45558999998854
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=88.21 E-value=0.62 Score=39.84 Aligned_cols=72 Identities=19% Similarity=0.171 Sum_probs=50.0
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hH-HHHHHHHHhcCCcEEE
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MD-EDVKWLQTITKLPILV 209 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~-~~i~~i~~~~~~pv~v 209 (349)
..|++...+.+++..+.|++.|.|+.+.+. .+.. .+ ..+..+++.+++||.+
T Consensus 21 ~~d~~~~~~~A~~m~~~GAdiIDIg~g~~~--------------------------~~e~e~~~~vi~~l~~~~~vpiSI 74 (262)
T d1f6ya_ 21 ERDPAPVQEWARRQEEGGARALDLNVGPAV--------------------------QDKVSAMEWLVEVTQEVSNLTLCL 74 (262)
T ss_dssp HTCHHHHHHHHHHHHHHTCSEEEEBCC------------------------------CHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeCCCCCC--------------------------CCHHHHHHHHHHHHHHhhcCCccc
Confidence 468888889999999999999998754321 0111 12 2355566667899887
Q ss_pred EEecCHHHHHHHHH--cCCCEEE
Q 018919 210 KGVLTAEDARIAVQ--AGAAGII 230 (349)
Q Consensus 210 K~v~~~~~a~~a~~--~G~d~I~ 230 (349)
...+++.++.+++ .|++.|-
T Consensus 75 -DT~~~~v~~aal~~~~Ga~iIN 96 (262)
T d1f6ya_ 75 -DSTNIKAIEAGLKKCKNRAMIN 96 (262)
T ss_dssp -ECSCHHHHHHHHHHCSSCEEEE
T ss_pred -cCCccHHHHHHHHhhcccceee
Confidence 4567888888888 6888664
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=88.20 E-value=3 Score=33.62 Aligned_cols=155 Identities=15% Similarity=0.134 Sum_probs=86.2
Q ss_pred HHHHHHHHHcCCeEE---ecCCCC--CCHHHH---HhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCC
Q 018919 91 YATARAASAAGTIMT---LSSWST--SSVEEV---ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (349)
Q Consensus 91 ~~la~aa~~~G~~~~---~~~~~~--~~~e~i---~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~ 161 (349)
..-++.|.++|+-++ +-..|+ .+++.. .+..+ ....+=++.+.+.+. ..+.+...+.+.+.+|-+-+
T Consensus 11 ~ed~~~~~~~gad~iGfif~~~SpR~vs~~~a~~i~~~~~~~~~~V~Vf~~~~~~~---i~~~~~~~~~d~vQlHg~e~- 86 (200)
T d1v5xa_ 11 LEDALLAEALGAFALGFVLAPGSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEE---VLRLMEEARLQVAQLHGEEP- 86 (200)
T ss_dssp HHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHH---HHHHHHHTTCSEEEECSCCC-
T ss_pred HHHHHHHHhCCCCEEEEEcCCCCCCCcCHHHHHHHHHhhcCceeeeeeeeechhhh---hhhhhcccccccccccccCC-
Confidence 355677777776432 212222 345543 33333 444455666555543 44556778999998875321
Q ss_pred CCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCC-C--CC
Q 018919 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A--RQ 238 (349)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~g-g--~~ 238 (349)
.+.++.+++. .|++.......+......+..+|++.+.... | ..
T Consensus 87 -------------------------------~~~~~~l~~~--~~iik~~~~~~~~~~~~~~~~~~~~L~D~~~~g~g~~ 133 (200)
T d1v5xa_ 87 -------------------------------PEWAEAVGRF--YPVIKAFPLEGPARPEWADYPAQALLLDGKRPGSGEA 133 (200)
T ss_dssp -------------------------------HHHHHHHTTT--SCEEEEEECSSSCCGGGGGSSCSEEEEECSSTTSCCC
T ss_pred -------------------------------HHHHHHHhhc--cccceeeccCchhhHHHhhcchhheeecccccCcccc
Confidence 2445555543 4554333322111112345678999887542 1 11
Q ss_pred CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 239 LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 239 ~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
.++ .|. ..... ...|++..|||.. +.+.+++.++..+|=+.+.+
T Consensus 134 ~~~---~~~--~~~~~---~~~~~~LAGGl~~-~Nv~~~~~~~p~gvDvsSGv 177 (200)
T d1v5xa_ 134 YPR---AWA--KPLLA---TGRRVILAGGIAP-ENLEEVLALRPYALDLASGV 177 (200)
T ss_dssp CCG---GGG--HHHHH---TTSCEEECSSCCS-TTHHHHHHHCCSEEEESGGG
T ss_pred cch---HHH--hhhhh---ccCceEecCCCCH-HHHHHHHhcCCCEEEEcCce
Confidence 111 121 11111 2579999999985 67889999999999988754
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=87.76 E-value=1.1 Score=39.37 Aligned_cols=99 Identities=19% Similarity=0.145 Sum_probs=62.3
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc-cCCCCCCc---h-HHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN-FQGLDLGK---M-DEDVK 197 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~-~~~~~~~~---~-~~~i~ 197 (349)
.|.++.+....+.....+.++.+.+.|++++... ++.. + +..+ . ...... ..|+-.+. . .+.++
T Consensus 212 ~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~i-nt~~-~-~~~~-------~-~~~~~~~~GGlSG~~i~~~al~~v~ 280 (336)
T d1f76a_ 212 VPIAVKIAPDLSEEELIQVADSLVRHNIDGVIAT-NTTL-D-RSLV-------Q-GMKNCDQTGGLSGRPLQLKSTEIIR 280 (336)
T ss_dssp CCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEEC-CCBC-C-CTTS-------T-TSTTTTCSSEEEEGGGHHHHHHHHH
T ss_pred CCcccccchhhhhhhhhhhHHHHHhcCccchhhh-hhhh-c-cccc-------c-cccccccccccccchhHHHHHHHHH
Confidence 4678888766666677788888889999997643 3211 0 0000 0 000000 01110111 1 46688
Q ss_pred HHHHhc--CCcEE-EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 198 WLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 198 ~i~~~~--~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++++.+ ++||+ +.||.+.+||...+.+||+.|.+.
T Consensus 281 ~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~ 318 (336)
T d1f76a_ 281 RLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIY 318 (336)
T ss_dssp HHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHH
Confidence 888877 58864 566899999999999999999984
|
| >d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=87.72 E-value=1.5 Score=37.85 Aligned_cols=117 Identities=15% Similarity=0.239 Sum_probs=69.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch----HHHHHHHHHhcC------CcE
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM----DEDVKWLQTITK------LPI 207 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~----~~~i~~i~~~~~------~pv 207 (349)
..+.++.+.++|++.+-+|+.+. +.+. .+.++++.+.++ .|+
T Consensus 45 ~~e~l~~Li~aGvnv~RiN~SHg----------------------------~~e~h~~~i~~iR~~~~~~~~~~il~~~~ 96 (282)
T d2g50a2 45 SVETLKEMIKSGMNVARMNFSHG----------------------------THEYHAETIKNVRTATESFASDPILYRPV 96 (282)
T ss_dssp SHHHHHHHHHHTCCEEEEETTSS----------------------------CHHHHHHHHHHHHHHHHTTTTCTTTCCCC
T ss_pred CHHHHHHHHHcCCCEEEEeCCCC----------------------------CHHHHHHHHHHHHHHHHHhCCCceecccc
Confidence 34667788889999999888652 1111 233444433332 243
Q ss_pred EEEEe-----cC---HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEE----ecCCCCHHHHH
Q 018919 208 LVKGV-----LT---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL----DGGVRRGTDVF 275 (349)
Q Consensus 208 ~vK~v-----~~---~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia----~GGI~~~~dv~ 275 (349)
.+..- .+ .++...+.+.|+|+|.+|-- .....+..++++.+..+.+++||+ ..|+.+-++++
T Consensus 97 ~I~~d~~~~~l~~~di~di~~a~~~~vD~ialSFV------rs~~DI~~~r~~l~~~g~~~~IiaKIE~~~al~NldeIi 170 (282)
T d2g50a2 97 AVALDTKGPAVSEKDIQDLKFGVEQDVDMVFASFI------RKAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEIL 170 (282)
T ss_dssp EEEEECCCCSSCHHHHHHHHHHHHTTCSEEEETTC------CSHHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHH
T ss_pred ccccccccccccchHHHHHHHhhhccccceeeccc------CCHHHHHHHHHHHHHcCCCceEEEeecchhhhhcchhhc
Confidence 33221 22 36788899999999999621 122233334444333334677887 56677766666
Q ss_pred HHHHhCCCEEEEchHHH
Q 018919 276 KALALGASGIFIGRPVV 292 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l 292 (349)
++ +|+|||.|.=|
T Consensus 171 ~~----sDgIMIaRGDL 183 (282)
T d2g50a2 171 EA----SDGIMVARGDL 183 (282)
T ss_dssp HH----SSEEEEEHHHH
T ss_pred cc----cceeeeecccc
Confidence 55 79999999654
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=87.49 E-value=1.6 Score=38.62 Aligned_cols=270 Identities=19% Similarity=0.188 Sum_probs=136.8
Q ss_pred cccCCCcchHHH-HHHHhhcccccccccccC-------CCCCCCcceeEcCeecC---cceeecccccccccCChhhHHH
Q 018919 25 YYASGAEDQWTL-QENRNAFSRILFRPRILI-------DVSKIDMNTTVLGFKIS---MPIMIAPTAMQKMAHPEGEYAT 93 (349)
Q Consensus 25 y~~~g~~~~~t~-~~n~~~~~~~~l~p~~l~-------~~~~~d~s~~l~g~~~~---~Pi~iApm~~~~l~~~~~~~~l 93 (349)
.+.|..||+..+ ....++|..+.=+-|+.. ....-|+.+++.|.++. ..++..|...- +.+--..+
T Consensus 37 tiig~iGd~~~~~~~~~~~l~~Ve~v~~i~~pykl~SR~~~~~~t~I~v~gv~iG~~~l~lIAGPC~vE---S~e~~~~~ 113 (338)
T d1vr6a1 37 TVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVE---GREMLMET 113 (338)
T ss_dssp EEEEEEEEESSCCHHHHHTSTTEEEEEECSCSCCTTBTTTCCSCCCEECSSCEESTTEEEEEEECSBCC---CHHHHHHH
T ss_pred EEEEEECCccccCHHHHhcCCcceEEEecCCchhhhhCccCCCCceEEeCCEEECCCceEEEecCCCCC---CHHHHHHH
Confidence 344555555443 334455555443333332 22334666666666552 35555665432 22223578
Q ss_pred HHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHH-cCCCEEEEecCCCCCCchhHHhhhh
Q 018919 94 ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNR 172 (349)
Q Consensus 94 a~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~-~G~~~i~i~~d~p~~g~r~~d~~~~ 172 (349)
|+.+++.|..+..+... .+ +.. +..||-. .+.-.+.++.+.+ .|...+. .+-.+..-....+...-
T Consensus 114 A~~lke~g~~~~r~g~f-Kp-----Rts--p~sf~g~----g~~gL~~l~~~k~~~glpvvT-dV~~~~~~~~~~e~~Di 180 (338)
T d1vr6a1 114 AHFLSELGVKVLRGGAY-KP-----RTS--PYSFQGL----GEKGLEYLREAADKYGMYVVT-EALGEDDLPKVAEYADI 180 (338)
T ss_dssp HHHHHHTTCCEEECBSC-CC-----CCS--TTSCCCC----THHHHHHHHHHHHHHTCEEEE-ECSSGGGHHHHHHHCSE
T ss_pred HHHHHHhCcccccccee-cc-----ccc--ccccccc----hHHHHHHHHHHHhhcCceeEE-eccchhhhhhhhceeee
Confidence 99999999887664221 11 111 2223311 1333455555543 4765541 22211100000111111
Q ss_pred cCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe--cCHHH----HHHHHHcCCCEEEEecCCCCCCCC-c--h
Q 018919 173 FTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDY-V--P 243 (349)
Q Consensus 173 ~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v--~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~-~--~ 243 (349)
+++|. ++ +.+ .+.|+++-+ ++.||.+|-- .++++ ++.+...|-+-|++.-.|-+...+ . .
T Consensus 181 lQI~A----~~---~~n---~~LL~~~g~-t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~~~~~ 249 (338)
T d1vr6a1 181 IQIGA----RN---AQN---FRLLSKAGS-YNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNT 249 (338)
T ss_dssp EEECG----GG---TTC---HHHHHHHHT-TCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSB
T ss_pred EEech----hh---ccC---HHHHHHhhc-cCCcEEecCccccchhhhhhhHHHHHhcCCccceeeeccccccccccccc
Confidence 12221 11 011 356776654 6999999975 57766 455677999999987665432211 1 1
Q ss_pred hhHHHHHHHHHHhcCCCcEEEe----cCCCCHHH--HHHHHHhCCCEEEEchHHHHHHh-hcCHHHH-HHHHHHHHHHHH
Q 018919 244 ATIMALEEVVKATQGRIPVFLD----GGVRRGTD--VFKALALGASGIFIGRPVVYSLA-AEGEKGV-RRVLEMLREEFE 315 (349)
Q Consensus 244 ~~~~~l~~i~~~~~~~ipvia~----GGI~~~~d--v~kal~~GA~~V~ig~~~l~~~~-~~G~~gv-~~~l~~l~~el~ 315 (349)
..+..++.+.+.. ..|||+| ||-+..-- +..|+++|||++++-+-.=-.-+ +.|+..+ -+-++.+.++++
T Consensus 250 lD~~~i~~~k~~~--~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~Hp~P~~AlsDg~q~l~~~~~~~ll~~l~ 327 (338)
T d1vr6a1 250 LDISAVPIIRKES--HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMK 327 (338)
T ss_dssp CCTTHHHHHHHHB--SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCSSCGGGCBCHHHHHHHHHHHH
T ss_pred hhhcccceeeccc--cCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEeCCCcccCCCCccccCCHHHHHHHHHHHH
Confidence 2345566665543 6899986 56555432 34678899999999872210000 2232211 123566777777
Q ss_pred HHHHHcCC
Q 018919 316 LAMALSGC 323 (349)
Q Consensus 316 ~~m~~~G~ 323 (349)
..-...|.
T Consensus 328 ~i~~~vg~ 335 (338)
T d1vr6a1 328 KLADALGV 335 (338)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcc
Confidence 77666663
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=87.20 E-value=0.77 Score=39.75 Aligned_cols=75 Identities=17% Similarity=-0.008 Sum_probs=49.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-H----HHHHHHHHhcCCcEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-D----EDVKWLQTITKLPIL 208 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~----~~i~~i~~~~~~pv~ 208 (349)
+.+...+.++.+.+.|++.|.|.--++.+|.. ..+.+- | ..|+.+++..+.||.
T Consensus 36 ~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~---------------------~vs~eeE~~Rl~pvi~~l~~~~~~~iS 94 (282)
T d1ajza_ 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAA---------------------EVSVEEELQRVIPVVEAIAQRFEVWIS 94 (282)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCC---------------------CCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCcccccccc---------------------CCcHHHHHHHHHHHHHHHhhcccceEE
Confidence 34445566667778899999876655433211 112222 2 347777777777776
Q ss_pred EEEecCHHHHHHHHHcCCCEEE
Q 018919 209 VKGVLTAEDARIAVQAGAAGII 230 (349)
Q Consensus 209 vK~v~~~~~a~~a~~~G~d~I~ 230 (349)
+ ....++.|+.|+++|||.|-
T Consensus 95 I-DT~~~eVa~~al~~Ga~iIN 115 (282)
T d1ajza_ 95 V-DTSKPEVIRESAKVGAHIIN 115 (282)
T ss_dssp E-ECCCHHHHHHHHHTTCCEEC
T ss_pred E-EecChHHHHHHHhcCceEEe
Confidence 5 45678999999999998774
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=87.10 E-value=1.3 Score=38.29 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=32.0
Q ss_pred HHHHHHHHHhc--CCcEE-EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~--~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.+.++++.+ ++||+ +.++.+.+|+.+.+.+|||.|.+.
T Consensus 229 l~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~ 271 (311)
T d1juba_ 229 LANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIG 271 (311)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeee
Confidence 45577777776 47865 445799999999999999999984
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=86.62 E-value=2.7 Score=33.16 Aligned_cols=103 Identities=19% Similarity=0.181 Sum_probs=64.7
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCE
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKA 152 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~ 152 (349)
-|++|.++... |-.+-..++...+..|.--+. .... .. ..+.++.+.+.+++.
T Consensus 39 kVlla~~g~D~--Hd~G~~~va~~l~~~G~eVi~-lg~~---------------------~~---~e~iv~aa~~~~adv 91 (168)
T d7reqa2 39 RILLAKMGQDG--HDRGQKVIATAYADLGFDVDV-GPLF---------------------QT---PEETARQAVEADVHV 91 (168)
T ss_dssp EEEEECBTTCC--CCHHHHHHHHHHHHTTCEEEE-CCTT---------------------BC---HHHHHHHHHHHTCSE
T ss_pred eEEEEeCCccH--HHHHHHHHHHHHHhCCcceec-CCCc---------------------Cc---HHHHHHHHHccCCCE
Confidence 36677776433 665666667777776654322 1111 11 235667778889999
Q ss_pred EEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh--cCCcEEEEEecCHHHHHHHHHcCCCEE
Q 018919 153 IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGI 229 (349)
Q Consensus 153 i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~--~~~pv~vK~v~~~~~a~~a~~~G~d~I 229 (349)
+.+..-... .... -+.++.+++. .++||++.++...++...+.++|+|.|
T Consensus 92 I~iSs~~~~---------------------------~~~~~~~l~~~L~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~i 144 (168)
T d7reqa2 92 VGVSSLAGG---------------------------HLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEI 144 (168)
T ss_dssp EEEEECSSC---------------------------HHHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHHTEEEE
T ss_pred EEEecCccc---------------------------chHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHhCCCCEE
Confidence 987542110 0111 3456777765 268899999878888889999999985
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=86.26 E-value=8.6 Score=32.39 Aligned_cols=181 Identities=14% Similarity=0.069 Sum_probs=98.8
Q ss_pred ceeecccccccccCChhhHHHHHHH-HHcCCeEEe-----cCCCCCCHHHHHh-------hCC--CceEEEEeecCChhH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAA-SAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa-~~~G~~~~~-----~~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~ 137 (349)
|.++.|+.-..-.+.++-....+-. .+.|+.+++ |++...+.+|..+ ..+ .+.++.+.. .+.+.
T Consensus 9 ~~~~TPf~~dg~iD~~~l~~~i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~s~~~ 87 (293)
T d1f74a_ 9 SALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLKE 87 (293)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC-SCHHH
T ss_pred EeEECCCCCCCCcCHHHHHHHHHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCcccccccccc-ccHHH
Confidence 5555665433323333334555544 455776543 2334567666322 222 234444433 46677
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
+.++++.+++.|++++.+. .|.. + +. .+.+..+..+.+.+.+++|+++=..
T Consensus 88 ~iela~~a~~~Gad~i~~~--pP~~----------~--~~----------s~~~~~~~~~~v~~~~~~pi~iYn~P~~tg 143 (293)
T d1f74a_ 88 AVELGKYATELGYDCLSAV--TPFY----------Y--KF----------SFPEIKHYYDTIIAETGSNMIVYSIPFLTG 143 (293)
T ss_dssp HHHHHHHHHHHTCSEEECC--CCCS----------S--CC----------CHHHHHHHHHHHHHHHCCCEEEECCSSCSC
T ss_pred HHHHHHHHHHcCCCEeecc--Cccc----------c--cc----------chHHHHHHHhcccccCCceEEEEeecccee
Confidence 8889999999999998642 2210 0 00 0111145566777778999987543
Q ss_pred --cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 213 --LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 213 --~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
.+++..+++.+.. ..+-+-.. ..+...+.++.+..+ +..|+ .|+ ...+..++.+||++.+-|..
T Consensus 144 ~~l~~~~l~~L~~~~-~v~giK~~--------~~~~~~~~~~~~~~~-~~~v~-~g~---~~~~~~~~~~G~~G~i~~~~ 209 (293)
T d1f74a_ 144 VNMGIEQFGELYKNP-KVLGVKFT--------AGDFYLLERLKKAYP-NHLIW-AGF---DEMMLPAASLGVDGAIGSTF 209 (293)
T ss_dssp HHHHHHHHHHHHTST-TEEEEEEC--------CSCHHHHHHHHHHCT-TSEEE-ECC---GGGHHHHHHTTCCEEEESTH
T ss_pred ccccchhhhhhhhcc-cccccccC--------CCCHHHHHHHhhcCC-CeEEE-eCc---ccccchhhhCCCcccccccc
Confidence 2456677776652 33322111 113444555555543 45444 342 23567888999999999985
Q ss_pred HH
Q 018919 291 VV 292 (349)
Q Consensus 291 ~l 292 (349)
.+
T Consensus 210 n~ 211 (293)
T d1f74a_ 210 NV 211 (293)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=86.15 E-value=4.4 Score=30.23 Aligned_cols=91 Identities=9% Similarity=0.047 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHH-cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~-~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.+.++.+-+..+.-+. ...+.++|..+.+ ...|.|.+.-.- .+...++.+..+++. ..++|||.-.|-.+.
T Consensus 13 ~~~l~~~L~~~g~~v~--~a~~~~eAl~~l~~~~~dlvilD~~m-----p~~~G~e~~~~lr~~-~~~~piI~lT~~~~~ 84 (137)
T d1ny5a1 13 RGLLEEYLSMKGIKVE--SAERGKEAYKLLSEKHFNVVLLDLLL-----PDVNGLEILKWIKER-SPETEVIVITGHGTI 84 (137)
T ss_dssp HHHHHHHHHHHTCEEE--EESSHHHHHHHHHHSCCSEEEEESBC-----SSSBHHHHHHHHHHH-CTTSEEEEEEETTCH
T ss_pred HHHHHHHHHHCCCEEE--EECCHHHHHHHhhccccccchHHHhh-----hhhhHHHHHHHHHHh-CCCCCEEEEECCCCH
Confidence 4556666666676554 4678888877654 679998886431 112245777777654 347999999999999
Q ss_pred HHHHHHHHhCCCEEEEchHHH
Q 018919 272 TDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~l 292 (349)
+++.+++.+||+.... .|+-
T Consensus 85 ~~~~~a~~~Ga~dyl~-KP~~ 104 (137)
T d1ny5a1 85 KTAVEAMKMGAYDFLT-KPCM 104 (137)
T ss_dssp HHHHHHHTTTCCEEEE-ESCC
T ss_pred HHHHHHHHcCCCEEEe-CCCC
Confidence 9999999999998765 5653
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=85.79 E-value=1.4 Score=37.42 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=54.1
Q ss_pred cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 213 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.++.++.+..+.||++|.|-.... -+.| +++.+..+++.+ ++||+.-==|-++.++.++-.+|||+|.+=-+++
T Consensus 68 ~~p~~~a~~~~~gA~aiSVLTe~~-~F~G---s~~~l~~v~~~~--~~PiLrKDFIid~~QI~ear~~GADavLLI~~~L 141 (254)
T d1piia2 68 FDPARIAAIYKHYASAISVLTDEK-YFQG---SFNFLPIVSQIA--PQPILCKDFIIDPYQIYLARYYQADACLLMLSVL 141 (254)
T ss_dssp CCHHHHHHHHTTTCSEEEEECCST-TTCC---CTTHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTC
T ss_pred chhHHHHHHHHhccCceEEecccc-cCCC---CHHHHHHHHhcc--ccccchhcccCcHHHHHHHHhhccchhhhhHhhh
Confidence 345666667889999998854211 1112 245566677776 7999988889999999999999999998765443
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=85.75 E-value=8 Score=31.56 Aligned_cols=81 Identities=19% Similarity=0.122 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC
Q 018919 193 DEDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 270 (349)
++.++++++.+++||..... .+.++...+.+.| +|.+.+.-. .-+|......+..+++.. +++++..+...+
T Consensus 97 ~~~~~~l~~~~~~pia~gE~~~~~~~~~~~~~~~~~d~~~~d~~----~~GGit~~~~i~~~A~~~--~i~~~~h~~~~~ 170 (242)
T d1sjda1 97 VLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPG----RVGGYLEARRVHDVCAAH--GIPVWCGGMIET 170 (242)
T ss_dssp HHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTT----TTTSHHHHHHHHHHHHHT--TCCEEECCCCCC
T ss_pred HHHHHHHHhccCcccccccccccchhhhhhhhcCccCEEEeccc----cCccchhhhHHHHHHHHC--CCEEeecccccc
Confidence 67799999999999986554 6788999999988 888887532 224455555555566654 788887766666
Q ss_pred HHHHHHHHH
Q 018919 271 GTDVFKALA 279 (349)
Q Consensus 271 ~~dv~kal~ 279 (349)
+-....++.
T Consensus 171 ~i~~~a~~~ 179 (242)
T d1sjda1 171 GLGRAANVA 179 (242)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 555444333
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=85.72 E-value=5.5 Score=32.56 Aligned_cols=81 Identities=17% Similarity=0.104 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC
Q 018919 193 DEDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 270 (349)
++.++++++.+++||..... .+.++.+.+.+.| +|.+.+.-. .-+|......+..+++.. +++++..+...+
T Consensus 96 ~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~~~d~i~~d~~----~~GGit~~~~i~~~a~~~--~i~v~~~~~~~~ 169 (241)
T d1wuea1 96 FLDHAQLQRELKTRICLDENIRSLKDCQVALALGSCRSINLKIP----RVGGIHEALKIAAFCQEN--DLLVWLGGMFES 169 (241)
T ss_dssp SHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHH----HHTSHHHHHHHHHHHHHT--TCEEEECCCCCC
T ss_pred hhhhhhhhcccccccccCcccccchhhhhhhhhhhhhhhccccc----cccCcHHHHHHHHHHHHc--CCEEEecccccc
Confidence 67899999999999876553 5788888888887 788877421 012344444444455443 688887765666
Q ss_pred HHHHHHHHH
Q 018919 271 GTDVFKALA 279 (349)
Q Consensus 271 ~~dv~kal~ 279 (349)
+--....+.
T Consensus 170 ~i~~~a~~~ 178 (241)
T d1wuea1 170 GVGRALNLQ 178 (241)
T ss_dssp HHHHHHHHH
T ss_pred cccccchhh
Confidence 555544433
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=85.63 E-value=2.9 Score=35.25 Aligned_cols=144 Identities=15% Similarity=0.097 Sum_probs=88.0
Q ss_pred CCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc
Q 018919 112 SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (349)
Q Consensus 112 ~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (349)
.+++++++.-... . |-+..+.+.+.++.+.+.+.|+.++++.- .
T Consensus 30 ~~~~~la~~ID~T-l--L~p~~t~e~i~~lc~~A~~~~~aaVcV~P---------------------------------~ 73 (251)
T d1o0ya_ 30 AGIEDVKSAIEHT-N--LKPFATPDDIKKLCLEARENRFHGVCVNP---------------------------------C 73 (251)
T ss_dssp CCHHHHHHHEEEE-E--CCTTCCHHHHHHHHHHHHHHTCSEEEECG---------------------------------G
T ss_pred hCHHHHHHhcccc-C--CCCCCCHHHHHHHHHHHhhcCceEEEECH---------------------------------H
Confidence 4677777653210 0 12234567788888899999999988631 1
Q ss_pred hHHHHHHHHHhcCCcEEEEE-e----cC----HHHHHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcC-CC
Q 018919 192 MDEDVKWLQTITKLPILVKG-V----LT----AEDARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQG-RI 260 (349)
Q Consensus 192 ~~~~i~~i~~~~~~pv~vK~-v----~~----~~~a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~-~i 260 (349)
+.+..++.-+..++.|..=. - .+ ..+++.+.+.|||-|.+--.-+.-.++. ..-.+.+..+++.+++ -+
T Consensus 74 ~v~~a~~~L~gs~v~v~tVigFP~G~~~~~~K~~Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~l 153 (251)
T d1o0ya_ 74 YVKLAREELEGTDVKVVTVVGFPLGANETRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVV 153 (251)
T ss_dssp GHHHHHHHHTTSCCEEEEEESTTTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhcCCCceEEeeccCCCCCCcHHHHHHHHHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccce
Confidence 12333333333455443211 0 11 2678999999999998753211111111 1123556666776643 47
Q ss_pred cEEEecCCCCHHHHHHHH----HhCCCEEEEchHH
Q 018919 261 PVFLDGGVRRGTDVFKAL----ALGASGIFIGRPV 291 (349)
Q Consensus 261 pvia~GGI~~~~dv~kal----~~GA~~V~ig~~~ 291 (349)
.||..-+.-+.+++.++. ..|||+|--++-|
T Consensus 154 KVIlEt~~L~~~e~~~a~~ia~~aGadfvKTSTGf 188 (251)
T d1o0ya_ 154 KVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGF 188 (251)
T ss_dssp EEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSS
T ss_pred eeeecccccCcHHHHHHHHHHHHhCcceeeccCCC
Confidence 899999999999988753 4799999998865
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=85.38 E-value=9.9 Score=32.32 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=98.8
Q ss_pred hHHHHHHHHHcCCeEEec-----CCCCCCHHHHHh--------h----CC-CceEEEEeecCChhHHHHHHHHHHHcCCC
Q 018919 90 EYATARAASAAGTIMTLS-----SWSTSSVEEVAS--------T----GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFK 151 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~-----~~~~~~~e~i~~--------~----~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~ 151 (349)
-..++......|+.++=- ....++++|..+ + .. ..+.+++- .+.+.+.+.++.+.+.|.+
T Consensus 37 ~a~~~~~~~~GG~D~IKDDE~l~~~~~~p~~eRv~~~~~a~~~a~~~TG~~~lya~NiT--~~~~em~~ra~~~~~~G~~ 114 (283)
T d1ykwa1 37 FAEIAYQSWLGGLDIAKDDEMLADVTWSSIEERAAHLGKARRKAEAETGEPKIYLANIT--DEVDSLMEKHDVAVRNGAN 114 (283)
T ss_dssp HHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECC--CCGGGHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCceecCCccCCCCCCccHHHHHHHHHHHHHHHHHHhCCeeEEeeecC--CCHHHHHHHHHHHHHhCCC
Confidence 346778888889887642 223345655321 1 11 34555653 5778888899999999999
Q ss_pred EEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec------------C-HHHH
Q 018919 152 AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL------------T-AEDA 218 (349)
Q Consensus 152 ~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~------------~-~~~a 218 (349)
++.+++... + |..++.+++..++||..--.. + .-.+
T Consensus 115 ~~mv~~~~~-----------G--------------------~~a~~~l~~~~~lpi~~H~a~~g~~~r~~~~Gis~~vl~ 163 (283)
T d1ykwa1 115 ALLINALPV-----------G--------------------LSAVRMLSNYTQVPLIGHFPFIASFSRMEKYGIHSKVMT 163 (283)
T ss_dssp EEEEEHHHH-----------C--------------------HHHHHHHHHHCSSCEEEECTTTHHHHCSTTSEECHHHHH
T ss_pred EEEEecccc-----------h--------------------HHHHHHHHhhcCCCeEeeeccceeeccCcCCCccHHHHH
Confidence 988765321 0 567777887778888875321 1 1245
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-------cCCCcEEEecCCCCHHHHHHHHH-hC-CCEEE-Ec
Q 018919 219 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-------QGRIPVFLDGGVRRGTDVFKALA-LG-ASGIF-IG 288 (349)
Q Consensus 219 ~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-------~~~ipvia~GGI~~~~dv~kal~-~G-A~~V~-ig 288 (349)
+...-+|+|.|.+.+.||+..+.. -++ .++...+ +.-+||. +||+ ++..+-..+. +| .|.+. +|
T Consensus 164 KL~RLaGaD~ih~~~~gg~~~~~~---e~~-~~~~~~~~~~~~~~k~~~Pv~-sGG~-~~~~vp~~~~~~G~~Dvil~aG 237 (283)
T d1ykwa1 164 KLQRLAGLDAVIMPGFGDRVMTPE---EEV-LENVIECTKPMGRIKPCLPVP-GGSD-SALTLQTVYEKVGNVDFGFVPG 237 (283)
T ss_dssp HHHHHHTCSEEEEECSSTTSSSCH---HHH-HHHHHHHHSCCTTCCCCEEEE-ECSB-CTTTHHHHHHHHCSSCSEECBS
T ss_pred HHHHHcCCCceeecCCcccccCch---HHH-HHHHHHhcCcccccCCceeec-cCCc-chhhhHHHHHhcCCceEEEecC
Confidence 666779999999988777643221 222 2233322 2236775 6664 5567767776 79 57665 34
Q ss_pred h
Q 018919 289 R 289 (349)
Q Consensus 289 ~ 289 (349)
.
T Consensus 238 G 238 (283)
T d1ykwa1 238 R 238 (283)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.31 E-value=1.5 Score=39.94 Aligned_cols=94 Identities=20% Similarity=0.095 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCC------C---CCCCchh----hHHHHHHHHHHhc----
Q 018919 195 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA------R---QLDYVPA----TIMALEEVVKATQ---- 257 (349)
Q Consensus 195 ~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg------~---~~~~~~~----~~~~l~~i~~~~~---- 257 (349)
.+.++-+. +-++.+-++.++-.|..+.++|.++|.+|+.+- . ..|.+.- ..+.+.+|.+.+.
T Consensus 55 ~Lr~lL~~-~~~v~~~Ga~d~~~A~~~~kaGf~aiY~SG~~vaa~~s~s~~g~PD~gl~~~~ev~~~v~~I~~~~~~~d~ 133 (418)
T d1f61a_ 55 VLWEQLHD-LEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQ 133 (418)
T ss_dssp HHHHHHHH-SSCEEEEBCCSHHHHHHHHHTTCSCEEECHHHHHHHCCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCEEecccCCHHHHHHHHHhCCCEEEechHhhhcccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444433 457777788999999999999999999986310 0 1222211 1233444433220
Q ss_pred ------------CCCcEEEecC--CCCHHH---HHH-HHHhCCCEEEEch
Q 018919 258 ------------GRIPVFLDGG--VRRGTD---VFK-ALALGASGIFIGR 289 (349)
Q Consensus 258 ------------~~ipvia~GG--I~~~~d---v~k-al~~GA~~V~ig~ 289 (349)
-.+|||+|+. ..++.. .+| +..+||.+|.|--
T Consensus 134 ~~~~~~~~~~~~~~~PIIaDaDtGfG~~~nv~rtvk~~i~AGaAgihiED 183 (418)
T d1f61a_ 134 IAKIEGDTSVENWLAPIVADGEAGFGGALNVYELQKALIAAGVAGSHWED 183 (418)
T ss_dssp HHHHHTCCSCSCSSCCEEEECTTCSSSHHHHHHHHHHHHHHTCSEEEEES
T ss_pred HHHHhcccccccccCCeEEecccccccHHHHHHHHHHHHHhCCcEEEEec
Confidence 1489999853 233333 334 4458999999865
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=85.21 E-value=6.1 Score=29.71 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHc--------CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc-CCCcEE
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQA--------GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVF 263 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~--------G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~-~~ipvi 263 (349)
.+.++.+-+..+...-+-...+.++|...++. -.|.|.+.-. +. +...++.+.++++.-. .++|||
T Consensus 16 ~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~----mP-~~~G~el~~~ir~~~~~~~iPvi 90 (144)
T d1i3ca_ 16 SRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN----LP-KKDGREVLAEIKQNPDLKRIPVV 90 (144)
T ss_dssp HHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSC----CS-SSCHHHHHHHHHHCTTTTTSCEE
T ss_pred HHHHHHHHHHcCCCeEEEEECCHHHHHHHHHhchhhhccCCCCEEEEECc----cc-cccchHHHHHHHhCcccCCCeEE
Confidence 45566665555554444456788888776643 2677777532 11 1224677777765422 369999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 264 LDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
.-.+-.+.++..+++.+||+....= |+
T Consensus 91 ~lT~~~~~~~~~~a~~~Ga~~yl~K-P~ 117 (144)
T d1i3ca_ 91 VLTTSHNEDDVIASYELHVNCYLTK-SR 117 (144)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEEC-CS
T ss_pred EEECCCCHHHHHHHHHCCCCEEEEC-CC
Confidence 9999999999999999999988743 54
|
| >d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: GlpP-like family: GlpP-like domain: Glycerol uptake operon antiterminator-related protein TM1436 species: Thermotoga maritima [TaxId: 2336]
Probab=84.75 E-value=3.8 Score=32.44 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=61.4
Q ss_pred HHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCC
Q 018919 98 SAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (349)
Q Consensus 98 ~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p 176 (349)
++.+..+++||-.+ -+..+.. +..-+|=+.--|.......++.++...+|++++ +.... +
T Consensus 68 k~~~~dGIISTk~~----~i~~Ak~~Gl~tIqR~FliDS~al~~~~~~i~~~~PD~IEi-LPG~i--------------~ 128 (172)
T d1vkfa_ 68 KKAGADGIITIKPK----NYVVAKKNGIPAVLRFFALDSKAVERGIEQIETLGVDVVEV-LPGAV--------------A 128 (172)
T ss_dssp HHHTCSEEEESCHH----HHHHHHHTTCCEEEEEECCSHHHHHHHHHHHHHHTCSEEEE-ESGGG--------------H
T ss_pred HHcCCCEEEECCHH----HHHHHHHcCCeEEEEEEeeehHHHHHHHHHHhhcCCCEEEE-CCchh--------------h
Confidence 34677777776432 2332222 444444333467777788888888999999987 21100 0
Q ss_pred CcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEec
Q 018919 177 PFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~ 233 (349)
-+.+ ++..+.|++..|. .+.|++..|+++| .+|..||
T Consensus 129 ----------------p~ii---~~~~~~piIAGGLI~~~edv~~al~~g-~aVSTS~ 166 (172)
T d1vkfa_ 129 ----------------PKVA---RKIPGRTVIAAGLVETEEEAREILKHV-SAISTSS 166 (172)
T ss_dssp ----------------HHHH---TTSTTSEEEEESCCCSHHHHHHHTTTS-SEEEECC
T ss_pred ----------------HHHH---HHhcCCCEEeeCCcCCHHHHHHHHhcC-eEEECCC
Confidence 1233 3345679999884 7899999999765 4887765
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=84.56 E-value=3.1 Score=34.60 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=76.3
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcC--CcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITK--LPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~--~pv~v 209 (349)
.+++...+.++.+.+.|++.+-+.++.. .+. .+.++.+|+..+ ..|.+
T Consensus 14 ~s~ee~~~~a~~~~~~Gf~~~KikvG~~-----------------------------~~~di~~v~~vr~~~g~~~~l~v 64 (252)
T d1yeya1 14 YSDEKLVRLAKEAVADGFRTIKLKVGAN-----------------------------VQDDIRRCRLARAAIGPDIAMAV 64 (252)
T ss_dssp --CHHHHHHHHHHHHTTCSEEEEECCSC-----------------------------HHHHHHHHHHHHHHHCSSSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCC-----------------------------HHHHHHHHHHHHHHhCCCceEee
Confidence 3567788889999999999998877431 122 567888888863 44443
Q ss_pred EE--ecCHHHHHHHHH----cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KG--VLTAEDARIAVQ----AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~--v~~~~~a~~a~~----~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
=. .-+.++|....+ .++..+- -...+.....+.++.+.. ..+||.++=.+.+..|+.+++..| +
T Consensus 65 DaN~~~~~~~A~~~~~~l~~~~~~~iE--------eP~~~~d~~~~~~~~~~~-~~ipia~gE~~~~~~~~~~~i~~~a~ 135 (252)
T d1yeya1 65 DANQRWDVGPAIDWMRQLAEFDIAWIE--------EPTSPDDVLGHAAIRQGI-TPVPVSTGEHTQNRVVFKQLLQAGAV 135 (252)
T ss_dssp ECTTCCCHHHHHHHHHTTGGGCCSCEE--------CCSCTTCHHHHHHHHHHS-TTSCEECCTTCCSHHHHHHHHHHTCC
T ss_pred ccccCcchHHHHHHHHhhhhcCceeec--------CCcchhhHHHHHHHhhcc-CCCceeccccccchhhhhhHhhcccc
Confidence 21 135666655444 3333221 001223455555655543 268999999999999999999988 5
Q ss_pred CEEEEc
Q 018919 283 SGIFIG 288 (349)
Q Consensus 283 ~~V~ig 288 (349)
|.+++-
T Consensus 136 d~~~~d 141 (252)
T d1yeya1 136 DLIQID 141 (252)
T ss_dssp SEECCC
T ss_pred ceeccc
Confidence 888774
|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Bacillus anthracis [TaxId: 1392]
Probab=84.54 E-value=1.1 Score=38.41 Aligned_cols=74 Identities=22% Similarity=0.195 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HH----HHHHHHHhcCCcEEE
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DE----DVKWLQTITKLPILV 209 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~----~i~~i~~~~~~pv~v 209 (349)
.+...+.++.+.+.|++.|.|.--+..+|.. ..+++- |+ .++.+++..++||.+
T Consensus 41 ~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~---------------------~is~~eE~~rl~p~i~~~~~~~~~~iSI 99 (273)
T d1tx2a_ 41 VDAAVRHAKEMRDEGAHIIDIGGESTRPGFA---------------------KVSVEEEIKRVVPMIQAVSKEVKLPISI 99 (273)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESCC----CC---------------------CCCHHHHHHHHHHHHHHHHHHSCSCEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEeeceecccccc---------------------ccCHHHHHHhhchhHHhhhccceEEEeh
Confidence 4445556666778899999876654332111 112222 32 466677767788765
Q ss_pred EEecCHHHHHHHHHcCCCEEE
Q 018919 210 KGVLTAEDARIAVQAGAAGII 230 (349)
Q Consensus 210 K~v~~~~~a~~a~~~G~d~I~ 230 (349)
....++.|+.|+++|+|.|-
T Consensus 100 -DT~~~~Va~~al~~G~~iIN 119 (273)
T d1tx2a_ 100 -DTYKAEVAKQAIEAGAHIIN 119 (273)
T ss_dssp -ECSCHHHHHHHHHHTCCEEE
T ss_pred -HHhhHHHHHHHHHcCCeEEe
Confidence 45688999999999999764
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=84.50 E-value=1.6 Score=37.62 Aligned_cols=72 Identities=17% Similarity=0.313 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe--cCH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV--LTA 215 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v--~~~ 215 (349)
.+..+-+++.|+|.+.+.++..+. .. + ..|.+ ++.++++++.+++|+++-|. .+.
T Consensus 157 eea~~Fv~~TgvD~LAvaiGt~HG----------~y-~-----------~~p~l~~~~L~~i~~~~~vPLVlHGgSG~~~ 214 (284)
T d1gvfa_ 157 QEAKRFVELTGVDSLAVAIGTAHG----------LY-S-----------KTPKIDFQRLAEIREVVDVPLVLHGASDVPD 214 (284)
T ss_dssp HHHHHHHHHHCCSEEEECSSCCSS----------CC-S-----------SCCCCCHHHHHHHHHHCCSCEEECCCTTCCH
T ss_pred HHHHHHHHHhCCCEEeeecCceee----------cc-C-----------CCCccccchhhhhhccccCCeEeeCCCCCCH
Confidence 344555677899999999887542 11 0 13455 78899999999999988886 466
Q ss_pred HHHHHHHHcCCCEEEEe
Q 018919 216 EDARIAVQAGAAGIIVS 232 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~ 232 (349)
++.+++.+.|+.-|-+.
T Consensus 215 e~i~~ai~~Gi~KiNi~ 231 (284)
T d1gvfa_ 215 EFVRRTIELGVTKVNVA 231 (284)
T ss_dssp HHHHHHHHTTEEEEEEC
T ss_pred HHHHHHHHcCeEEEEec
Confidence 88999999998888774
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.37 E-value=2.8 Score=35.69 Aligned_cols=146 Identities=14% Similarity=0.240 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcEEE--EEe---
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPILV--KGV--- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~v--K~v--- 212 (349)
.+.++.+.++|++.+-+|+.+.. .+. . ....+.++++.+.. +.||.+ ..-
T Consensus 34 ~e~l~~li~aG~dv~RlN~SHg~---~~~-h--------------------~~~i~~iR~~~e~~~G~~v~i~~dl~~p~ 89 (265)
T d1a3xa2 34 PETLVALRKAGLNIVRMNFSHGS---YEY-H--------------------KSVIDNARKSEELYPGRPLAIALDTKGPA 89 (265)
T ss_dssp HHHHHHHHHHTEEEEEEETTSCC---HHH-H--------------------HHHHHHHHHHHHHCCCSCCBCEEECCCCS
T ss_pred HHHHHHHHHcCCCEEEEECCCCC---HHH-H--------------------HHHHHHHHHHhhhccCCceeeeccccchh
Confidence 45677888899999888876421 100 0 00023344443432 455432 221
Q ss_pred cC---HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEE----ecCCCCHHHHHHHHHhCCCEE
Q 018919 213 LT---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL----DGGVRRGTDVFKALALGASGI 285 (349)
Q Consensus 213 ~~---~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia----~GGI~~~~dv~kal~~GA~~V 285 (349)
.+ .++.+.+.+.|+|+|.+|-- .....+..++++....+.+++||+ --|+.+-++++++ +|+|
T Consensus 90 ltekD~~di~~a~~~~vD~ialSFV------rs~~Di~~~r~~l~~~~~~~~IiaKIE~~~al~NldeIi~~----sDgi 159 (265)
T d1a3xa2 90 LSEKDKEDLRFGVKNGVHMVFASFI------RTANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILKV----TDGV 159 (265)
T ss_dssp SCHHHHHHHHHHHHTTCCEECCTTC------CSHHHHHHHHHHHCGGGTTSCCEEEECSHHHHTTHHHHHHH----CSEE
T ss_pred cccchHHHHHHhhhcccceEeeccC------CCHHHHHHHHHHHHHhcCCCeEEeeccchHHHhChHHHHhh----ccee
Confidence 22 36688899999999987521 122334444444332233577775 2455555555544 8999
Q ss_pred EEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
||.|.-|-- +-+++ -+-.+++++-......|..
T Consensus 160 mIaRGDLgv-----ei~~e-~vp~~Qk~Ii~~~~~~gkp 192 (265)
T d1a3xa2 160 MVARGDLGI-----EIPAP-EVLAVQKKLIAKSNLAGKP 192 (265)
T ss_dssp EEEHHHHHH-----HSCHH-HHHHHHHHHHHHHHHHTCC
T ss_pred EEEccchhh-----hccHH-HHHHHHHHHHHHHHHcCCc
Confidence 999976521 11222 2345566666667777753
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=84.26 E-value=2.4 Score=34.89 Aligned_cols=40 Identities=33% Similarity=0.350 Sum_probs=34.3
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.++++|+.. +.+|.+=|-.+.+.+..+.++|||.+++.
T Consensus 156 l~kI~~l~~~~~~~~I~VDGGIn~~~i~~l~~aGad~~V~G 196 (220)
T d1h1ya_ 156 MEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAG 196 (220)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEES
T ss_pred hHHHHHHHhcCCCceEEEEecCCHHHHHHHHHCCCCEEEEC
Confidence 77888888765 67888877788999999999999999884
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=84.25 E-value=7.8 Score=32.66 Aligned_cols=145 Identities=15% Similarity=0.116 Sum_probs=80.2
Q ss_pred CHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc
Q 018919 113 SVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (349)
Q Consensus 113 ~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (349)
++.++++.+. +..+.+|... |. ..++.++++|+|.|.+. |+- .....++..... .+-+
T Consensus 3 Ti~~L~~~K~~g~ki~~lTay-D~----~~A~~~~~agvDiiLVG-DSl------gmv~~G~~~T~~---------vt~d 61 (262)
T d1m3ua_ 3 TISLLQKYKQEKKRFATITAY-DY----SFAKLFADEGLNVMLVG-DSL------GMTVQGHDSTLP---------VTVA 61 (262)
T ss_dssp CHHHHHHHHHHTCCEEEEECC-SH----HHHHHHHHHTCCEEEEC-TTH------HHHTTCCSSSTT---------CCHH
T ss_pred cHHHHHHHHhCCCcEEEEEcC-CH----HHHHHHHHCCCCEEEEc-CcH------HhcccCCCCcce---------echH
Confidence 4566655442 3456676542 32 34666788999998752 210 000111110000 1112
Q ss_pred h-HHHHHHHHHhcCCcEEEEEe-----cCH----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCc
Q 018919 192 M-DEDVKWLQTITKLPILVKGV-----LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 261 (349)
Q Consensus 192 ~-~~~i~~i~~~~~~pv~vK~v-----~~~----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 261 (349)
. ....+.+++..+-.+++-.. .+. ..|.++.++|||+|.+- ++....+.+..+.+. .||
T Consensus 62 ~mi~H~~aV~rga~~~~vv~DmPf~sy~~~~~a~~~a~~l~~~GAdaVKlE--------gg~~~~~~I~~L~~~---gIP 130 (262)
T d1m3ua_ 62 DIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRAGANMVKIE--------GGEWLVETVQMLTER---AVP 130 (262)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHHHHHHTTCSEEECC--------CSGGGHHHHHHHHHT---TCC
T ss_pred hHHHHHHHHHhccccceeEeccccccchhhHHHHHHHHHHHhcCCcEEEec--------cchhHHHHHHHHHHc---CCe
Confidence 2 44577788777777776554 233 34677889999999883 233345555555543 688
Q ss_pred EEEe-----------cCC----CCHHHHH------HHHH-hCCCEEEEch
Q 018919 262 VFLD-----------GGV----RRGTDVF------KALA-LGASGIFIGR 289 (349)
Q Consensus 262 via~-----------GGI----~~~~dv~------kal~-~GA~~V~ig~ 289 (349)
|++= ||. ++.+++. ++|+ +||.++.+--
T Consensus 131 V~gHiGL~PQ~~~~~GG~r~qGkt~~ea~~l~~~a~~le~AGaf~ivlE~ 180 (262)
T d1m3ua_ 131 VCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVLEC 180 (262)
T ss_dssp EEEEEESCGGGHHHHTSSCCCCCSHHHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEeehhhchhhhhhcCCccccCccHHHHHHHHHHHHHHHhhcceEEEEec
Confidence 8863 553 4445442 4444 8999988753
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=84.19 E-value=2.2 Score=36.33 Aligned_cols=74 Identities=16% Similarity=0.101 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHH----HHHHHHhcCCcEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DED----VKWLQTITKLPIL 208 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~----i~~i~~~~~~pv~ 208 (349)
+.+...+.++.+.+.|++.|.|.--+..+|.. ..+++- |+. ++.+++ .+++|.
T Consensus 24 ~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~---------------------~is~~eE~~Rl~pvi~~l~~-~~~~iS 81 (264)
T d1ad1a_ 24 NVESAVTRVKAMMDEGADIIDVGGVSTRPGHE---------------------MITVEEELNRVLPVVEAIVG-FDVKIS 81 (264)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEESCCCSTTCC---------------------CCCHHHHHHHHHHHHHHHTT-SSSEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCCCCC---------------------cCCHHHHHHhhhhHhhhhcc-cCcccc
Confidence 55666667777888999999887655433211 122222 332 444443 366665
Q ss_pred EEEecCHHHHHHHHHcCCCEEE
Q 018919 209 VKGVLTAEDARIAVQAGAAGII 230 (349)
Q Consensus 209 vK~v~~~~~a~~a~~~G~d~I~ 230 (349)
+ ....++.|+.|+++|||.|-
T Consensus 82 I-DT~~~eVa~~al~~Ga~iIN 102 (264)
T d1ad1a_ 82 V-DTFRSEVAEACLKLGVDIIN 102 (264)
T ss_dssp E-ECSCHHHHHHHHHTTCCEEE
T ss_pred h-hhhhHHHHHHHHhcCCcEee
Confidence 5 45678999999999999886
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=84.00 E-value=2.7 Score=34.50 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=51.9
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCC-CcEEEecCCCCHHHHHHH----HHhCCCEEEEch
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKA----LALGASGIFIGR 289 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~-ipvia~GGI~~~~dv~ka----l~~GA~~V~ig~ 289 (349)
.+++.|.+.|||-|.+--.-+.-.++.. .-.+.+..+++.+++. +.||..-|.-+.+++.++ +..|||+|--++
T Consensus 74 ~e~~~ai~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTST 153 (211)
T d1ub3a_ 74 LEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKTST 153 (211)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCC
T ss_pred HHHHHHHHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccCCHHHHHHHHHHHHHhccceEEecC
Confidence 6788999999999987532111111111 1234566667766543 679999999999988764 447999999988
Q ss_pred HH
Q 018919 290 PV 291 (349)
Q Consensus 290 ~~ 291 (349)
-|
T Consensus 154 G~ 155 (211)
T d1ub3a_ 154 GF 155 (211)
T ss_dssp SS
T ss_pred CC
Confidence 65
|
| >d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain species: Clostridium sticklandii [TaxId: 1511]
Probab=83.90 E-value=1.9 Score=33.76 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
.+.++.+.+.++|.|-+|..-. ........++++.+.+ .++++|++.|++.+.+.+ -.+|||++.
T Consensus 69 e~~v~~a~e~~~d~VglS~l~t----~~~~h~~~~~~~i~~l~~~g~~d~v~vivGG~~~~~~~a---~~~GaD~~f 138 (160)
T d1xrsb1 69 EDFIKKAVELEADVLLVSQTVT----QKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNEIA---KELGYDAGF 138 (160)
T ss_dssp HHHHHHHHHTTCSEEEEECCCC----TTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHHH---HTTTCSEEE
T ss_pred HHHHHHHHhcCCCEEEEeeccc----ccchhHHHHHHHHHHHHHcCCCCceEEEEcCCCCCHHHH---HHcCCCEEc
Confidence 3557889999999999986422 1111233333333332 235889988888876533 357999985
|
| >d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Transaldolase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.79 E-value=8.4 Score=33.40 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC-----------C--CCchhhHHHHHHHHHHhc--CC
Q 018919 195 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-----------L--DYVPATIMALEEVVKATQ--GR 259 (349)
Q Consensus 195 ~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~-----------~--~~~~~~~~~l~~i~~~~~--~~ 259 (349)
.++.+.+.-++++-+-.+.+.+.+..|.++|+.+|... =||- . ..|.+.+..+.++.+..+ +-
T Consensus 140 A~~~L~~~~GI~vN~TliFS~~Qa~~aa~Aga~~iSpf--VgRi~d~~~~~~~~~~~~~~g~~gi~~~~~i~~~~~~~~~ 217 (319)
T d2e1da1 140 AGKELEEQHGIHCNMTLLFSFAQAVACAEAGVTLISPF--VGRILDWHVANTDKKSYEPQGDPGVKSVTKIYNYYKKFGY 217 (319)
T ss_dssp HHHHHHHHHCCCEEEEEECSHHHHHHHHHHTCSEEEEB--SHHHHHHHHHHSSCCCCCGGGCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCceeeEEEEeeHHHHHHHHhcCceEEEee--ccchhhhhhccccccccccccccHHHHHHHHHHHHHHhCc
Confidence 34444333489999999999999999999999998764 2220 0 013444566666655442 22
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 260 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 260 ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
-+.+....+|+..++.. .+|+|.|-+.-..+..+.
T Consensus 218 ~T~v~~AS~r~~~~v~~--laG~d~vTi~p~~~~~l~ 252 (319)
T d2e1da1 218 KTIVMGASFRNTGEIKA--LAGCDFLTISPKLLGELL 252 (319)
T ss_dssp CCEEEEBCCSSHHHHHT--TTTSSEEEECHHHHHHHH
T ss_pred CceeecccccchhHHHH--HcCCCeEecCHHHHHHHH
Confidence 34455567999999843 379999999998877653
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=83.74 E-value=3.2 Score=33.47 Aligned_cols=154 Identities=19% Similarity=0.266 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCCeEE---ecCCCC--CCHHHH---HhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 91 YATARAASAAGTIMT---LSSWST--SSVEEV---ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 91 ~~la~aa~~~G~~~~---~~~~~~--~~~e~i---~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
..-++.|.++|+-++ +...|+ .+++.. .+..+ ...+=++...+++. ..+.++..+.+.+.+|-+-+
T Consensus 11 ~~d~~~~~~~gaD~iGfif~~~SpR~Vs~~~a~~i~~~~~-~~~V~Vfv~~~~~~---i~~~~~~~~~d~iQlHG~e~-- 84 (198)
T d1piia1 11 GQDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAP-LQYVGVFRNHDIAD---VVDKAKVLSLAAVQLHGNEE-- 84 (198)
T ss_dssp HHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHCC-CEEEEEESSCCHHH---HHHHHHHHTCSEEEECSCCC--
T ss_pred HHHHHHHHhCCCCEEEEEccCCCCCCcCHHHHHHhhhhcc-cccceeeeccchhh---HHHhhhcccccceeecCCcc--
Confidence 356667777776533 222232 344443 33344 33444566555543 44556777899998875421
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCc-EEEEEecCHHHHHHHHHcCCCEEEEec-CCCCC--
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLP-ILVKGVLTAEDARIAVQAGAAGIIVSN-HGARQ-- 238 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~p-v~vK~v~~~~~a~~a~~~G~d~I~v~~-~gg~~-- 238 (349)
.+.++.+++..... ...+.....+....-....+|.+.+.+ .||+.
T Consensus 85 ------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lld~~~gGtG~~ 134 (198)
T d1piia1 85 ------------------------------QLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQR 134 (198)
T ss_dssp ------------------------------HHHHHHHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEEEESCSCCSSCC
T ss_pred ------------------------------HHHHHHHhccccccccceeccchhhhhhHHHhhhhcccccCCccccccee
Confidence 24466666654322 222322111100000113478887764 34542
Q ss_pred CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 239 LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 239 ~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
+|+ +.+. .. ...|++..||| +++.+.+++.+++.+|=+.+-+
T Consensus 135 fdw-----~~~~----~~-~~~~~~LAGGl-~~~Nv~~a~~~~p~gvDvsSGv 176 (198)
T d1piia1 135 FDW-----SLLN----GQ-SLGNVLLAGGL-GADNCVEAAQTGCAGLDFNSAV 176 (198)
T ss_dssp CCG-----GGGT----TS-CCTTEEEESSC-CTTTHHHHHTTCCSEEEECGGG
T ss_pred eeh-----hhhc----cc-ccceeEEecCC-CHHHHHHHHhcCCCEEEeCCcc
Confidence 333 2221 11 25689999999 7899999999999999988743
|
| >d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Thermotoga maritima [TaxId: 2336]
Probab=83.29 E-value=3 Score=33.78 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHH--------HHHHHhCCCEEEE
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV--------FKALALGASGIFI 287 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv--------~kal~~GA~~V~i 287 (349)
+.+..+.+.|+|+++.+ + . ...+++.+.. .+.+=|||-..+- .+++..|||.+.|
T Consensus 117 ~~~~~l~~~g~~~vv~~----------~---~-~~~~~~~~~~---~iitPGIr~~~~~dDQkr~~t~~ai~~GAd~iVV 179 (198)
T d1vqta1 117 DRIEKLNKLGCDFVLPG----------P---W-AKALREKIKG---KILVPGIRMEVKADDQKDVVTLEEMKGIANFAVL 179 (198)
T ss_dssp HHHHHHHHHTCEEECCH----------H---H-HHHHTTTCCS---CEEECCBC---------CCBCHHHHTTTCSEEEE
T ss_pred HHHHHHHHhccCccccc----------c---h-hhhhhhhccc---cccccccccCCCCCCcccccCHHHHHcCCCEEEE
Confidence 44677888999876421 1 1 1222232321 2446788743221 2467889999999
Q ss_pred chHHHH
Q 018919 288 GRPVVY 293 (349)
Q Consensus 288 g~~~l~ 293 (349)
||+++.
T Consensus 180 GR~It~ 185 (198)
T d1vqta1 180 GREIYL 185 (198)
T ss_dssp SHHHHT
T ss_pred CCcccC
Confidence 999985
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=82.33 E-value=1.6 Score=36.98 Aligned_cols=73 Identities=16% Similarity=0.031 Sum_probs=52.2
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 214 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 214 ~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
++++..+..+.||++|.|-.-.. ..+| +++.|..+++.+ ++||+.-==|-++.++.++..+|||+|.+=-.++
T Consensus 62 d~~~~a~~ye~GA~aiSVLTd~~--~F~G--s~~~l~~vr~~~--~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L 134 (251)
T d1i4na_ 62 SLEDFIRMYDELADAISILTEKH--YFKG--DPAFVRAARNLT--CRPILAKDFYIDTVQVKLASSVGADAILIIARIL 134 (251)
T ss_dssp CHHHHHHHHHHHCSEEEEECCCS--SSCC--CTHHHHHHHTTC--CSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGS
T ss_pred cHHHHHHHHhcCCcceEEecccC--CCCC--CHHHHHHHhhcc--cCchhhhhhhhCHHHHHHHHhhccceEEeecccc
Confidence 34444445578999998854211 1112 345666776665 7999998889999999999999999998766554
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=81.93 E-value=7.3 Score=28.12 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHH-HHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDAR-IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~-~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.+.++.+-+.++.-++ ....+.++|. .+.+.-.|.|.+.-.- .+...++.+.++++.. .++||+.-.+-.+.
T Consensus 14 ~~~l~~~L~~~g~~v~-~~a~~~~~al~~~~~~~~dliilD~~m-----p~~~G~e~~~~ir~~~-~~~pvi~ls~~~~~ 86 (118)
T d1u0sy_ 14 RMMLKDIITKAGYEVA-GEATNGREAVEKYKELKPDIVTMDITM-----PEMNGIDAIKEIMKID-PNAKIIVCSAMGQQ 86 (118)
T ss_dssp HHHHHHHHHHTTCEEE-EEESSHHHHHHHHHHHCCSEEEEECSC-----GGGCHHHHHHHHHHHC-TTCCEEEEECTTCH
T ss_pred HHHHHHHHHHcCCceE-EEECCHHHHHHHHHhccCCEEEEecCC-----CCCCHHHHHHHHHHhC-CCCcEEEEEccCCH
Confidence 4556666666776653 2346666654 4556779999886431 1123467777776653 47999999999999
Q ss_pred HHHHHHHHhCCCEEEEchHH
Q 018919 272 TDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~ 291 (349)
+.+.+++.+||+.... .||
T Consensus 87 ~~~~~a~~~Ga~~yl~-KP~ 105 (118)
T d1u0sy_ 87 AMVIEAIKAGAKDFIV-KPF 105 (118)
T ss_dssp HHHHHHHHTTCCEEEE-SSC
T ss_pred HHHHHHHHcCCCEEEE-CCC
Confidence 9999999999998754 676
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=81.86 E-value=3.8 Score=33.63 Aligned_cols=91 Identities=23% Similarity=0.249 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHcCCCE-EEEecCCCCCCchhHHhh-hhc------CCCCcCcccccCCC-CCCchHHHHHHHHHhc-CC
Q 018919 136 NVVAQLVRRAERAGFKA-IALTVDTPRLGRREADIK-NRF------TLPPFLTLKNFQGL-DLGKMDEDVKWLQTIT-KL 205 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~-i~i~~d~p~~g~r~~d~~-~~~------~~p~~~~~~~~~~~-~~~~~~~~i~~i~~~~-~~ 205 (349)
....+.++.+.+.|.++ +.++.++|..-... .+. +.. .+. +.+.|+ ..+...+.++++|+.. +.
T Consensus 98 ~~~~~~i~~i~~~g~~~Gial~p~t~~~~~~~-~l~~~~~d~vlim~V~-----pG~~GQ~f~~~~l~KI~~lr~~~~~~ 171 (221)
T d1tqxa_ 98 ERCIQLAKEIRDNNLWCGISIKPKTDVQKLVP-ILDTNLINTVLVMTVE-----PGFGGQSFMHDMMGKVSFLRKKYKNL 171 (221)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECTTSCGGGGHH-HHTTTCCSEEEEESSC-----TTCSSCCCCGGGHHHHHHHHHHCTTC
T ss_pred chhhHHHHHHHhcCCeEEEeeccccccccchh-hcccccccEEEEEeec-----ccccccccCcchhHHHHHHHHhcCCc
Confidence 34456667777788774 66766666432221 110 000 111 122221 2223377888888875 57
Q ss_pred cEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 206 PILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 206 pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.|.|=|-.+.+.+..+.++|||.+++.
T Consensus 172 ~I~VDGGIn~~~i~~l~~aGad~iV~G 198 (221)
T d1tqxa_ 172 NIQVDGGLNIETTEISASHGANIIVAG 198 (221)
T ss_dssp EEEEESSCCHHHHHHHHHHTCCEEEES
T ss_pred ceEEEcccCHHhHHHHHHcCCCEEEEC
Confidence 787777789999999999999999874
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=81.50 E-value=6.8 Score=32.13 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC
Q 018919 193 DEDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 270 (349)
++.++++++.+++||..... .+.++++.+++.| +|.+.+.-. ..+|...+..+..+++.. +++++..+...+
T Consensus 102 ~~~~~~L~~~~~~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d~~----~~GGit~~~~i~~~A~~~--gi~~~~~~~~~~ 175 (242)
T d1muca1 102 RGGQVRLNQRTPAPIMADESIESVEDAFSLAADGAASIFALKIA----KNGGPRAVLRTAQIAEAA--GIGLYGGTMLEG 175 (242)
T ss_dssp HHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHH----HHTSHHHHHHHHHHHHHH--TCEEEECCSSCC
T ss_pred hhhhhhhhhhhhheeecccccccccchhhhhhcccccccccccc----cchhHHHHHHHHHHHHhC--CCCccccccccc
Confidence 67799999999999876553 5788999999887 778777421 012344444445555554 688877665666
Q ss_pred HHHHHHHHHhC
Q 018919 271 GTDVFKALALG 281 (349)
Q Consensus 271 ~~dv~kal~~G 281 (349)
+--....+.++
T Consensus 176 ~i~~~a~~h~~ 186 (242)
T d1muca1 176 SIGTLASAHAF 186 (242)
T ss_dssp HHHHHHHHHHH
T ss_pred ccchhhhhhHH
Confidence 55444444433
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.47 E-value=0.51 Score=40.75 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=45.8
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchh-hHHHHHHHHHHhcCCCc-EEEecCCCCHHHHHHHH----HhCCCEEEEchHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIP-VFLDGGVRRGTDVFKAL----ALGASGIFIGRPV 291 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ip-via~GGI~~~~dv~kal----~~GA~~V~ig~~~ 291 (349)
++.+.+.|+++|++.++.|-...-... ..+.+..+.+. ..+ +...|+. +-.|+++.. .+||+++++-.|+
T Consensus 26 i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~---~~~~i~gv~~~-st~~~i~~a~~a~~~Ga~~~~~~~P~ 101 (293)
T d1w3ia_ 26 AENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDV---TNKIIFQVGGL-NLDDAIRLAKLSKDFDIVGIASYAPY 101 (293)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTT---CSCEEEECCCS-CHHHHHHHHHHGGGSCCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECeechhhhhCCHHHHHHHHHHHHhh---ccccccccccc-hhhhhhhhhhhhhhhccccccccccc
Confidence 456778999999996654311000111 12333333332 223 3445555 345554433 3799999998886
Q ss_pred HHHHhhcCHHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEMLR 311 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l~ 311 (349)
++. ...++++.++++.+.
T Consensus 102 ~~~--~~~~~~i~~~f~~Ia 119 (293)
T d1w3ia_ 102 YYP--RMSEKHLVKYFKTLC 119 (293)
T ss_dssp SCS--SCCHHHHHHHHHHHH
T ss_pred hhc--cchHHHHHHHHHHHH
Confidence 541 113455555554443
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=81.30 E-value=16 Score=31.80 Aligned_cols=125 Identities=20% Similarity=0.251 Sum_probs=79.5
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
.+.+...+.++.+.+.|++.+.=..--| | ..| ..+.+. .+- .+.++++++++++|++. .
T Consensus 105 ES~e~~~~~A~~lke~g~~~~r~g~fKp----R--------tsp-----~sf~g~--g~~gL~~l~~~k~~~glpvvT-d 164 (338)
T d1vr6a1 105 EGREMLMETAHFLSELGVKVLRGGAYKP----R--------TSP-----YSFQGL--GEKGLEYLREAADKYGMYVVT-E 164 (338)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECBSCCC----C--------CST-----TSCCCC--THHHHHHHHHHHHHHTCEEEE-E
T ss_pred CCHHHHHHHHHHHHHhCccccccceecc----c--------ccc-----cccccc--hHHHHHHHHHHHhhcCceeEE-e
Confidence 4667778888888899988754211111 0 001 111111 123 68899999999999975 6
Q ss_pred ecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecC-CCCHHHHHHH----HHhCCCEEE
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG-VRRGTDVFKA----LALGASGIF 286 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG-I~~~~dv~ka----l~~GA~~V~ 286 (349)
+.+++++..+.+. +|.+.+...--+ ..+.|.++.+. +.||+.-=| ..+.+|...+ +..|..-|+
T Consensus 165 V~~~~~~~~~~e~-~DilQI~A~~~~-------n~~LL~~~g~t---~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vi 233 (338)
T d1vr6a1 165 ALGEDDLPKVAEY-ADIIQIGARNAQ-------NFRLLSKAGSY---NKPVLLKRGFMNTIEEFLLSAEYIANSGNTKII 233 (338)
T ss_dssp CSSGGGHHHHHHH-CSEEEECGGGTT-------CHHHHHHHHTT---CSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEE
T ss_pred ccchhhhhhhhce-eeeEEechhhcc-------CHHHHHHhhcc---CCcEEecCccccchhhhhhhHHHHHhcCCccce
Confidence 7888888888887 999998532222 24555555432 578888877 4677775544 336777777
Q ss_pred Ec
Q 018919 287 IG 288 (349)
Q Consensus 287 ig 288 (349)
++
T Consensus 234 lc 235 (338)
T d1vr6a1 234 LC 235 (338)
T ss_dssp EE
T ss_pred ee
Confidence 65
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=81.26 E-value=3.2 Score=35.91 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=56.7
Q ss_pred HHHHHHhc-CCcEEEEEe--cCHHHH-HHHHHcCCCEEEEecCCC---CCC---CCchhhHHHHHHHHHHhcCCCcEEE-
Q 018919 196 VKWLQTIT-KLPILVKGV--LTAEDA-RIAVQAGAAGIIVSNHGA---RQL---DYVPATIMALEEVVKATQGRIPVFL- 264 (349)
Q Consensus 196 i~~i~~~~-~~pv~vK~v--~~~~~a-~~a~~~G~d~I~v~~~gg---~~~---~~~~~~~~~l~~i~~~~~~~ipvia- 264 (349)
.+..+... ..+.++... ...+.. +...+.|.+++.+.-... ... ......++.+.++++.. +.|++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~~vivk 164 (329)
T d1p0ka_ 87 YEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV--SVPVIVK 164 (329)
T ss_dssp HHHHHHHCSSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHC--SSCEEEE
T ss_pred hhhHhhhCCcceEEEeeccchhHHHHHHHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHHc--CCCcEEE
Confidence 44444443 334444332 334444 445668999998864211 111 11233567788888776 455554
Q ss_pred -ecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 265 -DGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 265 -~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.|.+.+++++.++...|||++.++.
T Consensus 165 ~v~~~~~~~~a~~~~~~GaD~i~v~~ 190 (329)
T d1p0ka_ 165 EVGFGMSKASAGKLYEAGAAAVDIGG 190 (329)
T ss_dssp EESSCCCHHHHHHHHHHTCSEEEEEC
T ss_pred ecCCcchHHHHHHHHhcCCCEEEEcC
Confidence 7888999999999999999999954
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.18 E-value=8.5 Score=28.42 Aligned_cols=91 Identities=13% Similarity=0.052 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh----cCCCcEEEecCC
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLDGGV 268 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~----~~~ipvia~GGI 268 (349)
.+.++.+-+.++.-+. .+.+.++|..+.+.-.|.|.+.-.-. +...++.+.++++.. ...+|||+..|-
T Consensus 20 ~~~l~~~L~~~G~~v~--~a~~g~eal~~l~~~~dlillD~~mP-----~~dG~el~~~ir~~~~~~~~~~~~ii~lT~~ 92 (134)
T d1dcfa_ 20 RMVTKGLLVHLGCEVT--TVSSNEECLRVVSHEHKVVFMDVCMP-----GVENYQIALRIHEKFTKQRHQRPLLVALSGN 92 (134)
T ss_dssp HHHHHHHHHHTTCEEE--EESSHHHHHHHCCTTCSEEEEECCSS-----TTTTTHHHHHHHHHHC-CCSCCCEEEEEESC
T ss_pred HHHHHHHHHHCCCEEE--EECCHHHHHHHhhcCCCeEEEEeccC-----CCchHHHHHHHHHhcccccCCCCeEEEEeCC
Confidence 4557776666776543 46788888888787889888864310 111245566665432 125788888888
Q ss_pred CCHHHHHHHHHhCCCEEEEchHH
Q 018919 269 RRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
.+.++..+++++|++.+. -.|+
T Consensus 93 ~~~~~~~~~~~~G~~~~l-~KP~ 114 (134)
T d1dcfa_ 93 TDKSTKEKCMSFGLDGVL-LKPV 114 (134)
T ss_dssp CSHHHHHHHHHTTCCEEE-ESSC
T ss_pred CCHHHHHHHHHcCCCEEE-ECCC
Confidence 888999999999999875 4665
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=81.05 E-value=7.9 Score=27.96 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHH-cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~-~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.+.++..-+.++..+. ...+.++|....+ .-.|.|++.-. +. +...++.+.++++.- ..+|||.-.+-.+.
T Consensus 13 ~~~l~~~L~~~G~~v~--~a~~g~eal~~l~~~~~dliilD~~----mP-~~~G~e~~~~i~~~~-~~~pvi~lt~~~~~ 84 (119)
T d2pl1a1 13 RHHLKVQIQDAGHQVD--DAEDAKEADYYLNEHIPDIAIVDLG----LP-DEDGLSLIRRWRSND-VSLPILVLTARESW 84 (119)
T ss_dssp HHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEECSC----CS-SSCHHHHHHHHHHTT-CCSCEEEEESCCCH
T ss_pred HHHHHHHHHHCCCEEE--EECCHHHHHHHHHhcccceeehhcc----CC-CchhHHHHHHHHhcC-cccceEeeeccCCH
Confidence 3456665556676554 4678888766554 55788877532 10 112367777776643 47999999999999
Q ss_pred HHHHHHHHhCCCEEEEchHH
Q 018919 272 TDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~ 291 (349)
++..+++.+||+... -.||
T Consensus 85 ~~~~~a~~~Ga~~yl-~KP~ 103 (119)
T d2pl1a1 85 QDKVEVLSAGADDYV-TKPF 103 (119)
T ss_dssp HHHHHHHHTTCSEEE-ESSC
T ss_pred HHHHHHHHcCCCEEE-ECCC
Confidence 999999999999875 4565
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=81.04 E-value=7.7 Score=27.87 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHH-HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~-a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.+.++.+-+..+.-+. ...+.++|.. +.+...|.|.+.-.- .+...++.+.++++. .++|||+-.+-.+.
T Consensus 13 ~~~l~~~L~~~g~~v~--~a~~~~eal~~~~~~~~dlillD~~m-----p~~~G~~~~~~i~~~--~~~pvI~lt~~~~~ 83 (117)
T d2a9pa1 13 SDIIKFNMTKEGYEVV--TAFNGREALEQFEAEQPDIIILDLML-----PEIDGLEVAKTIRKT--SSVPILMLSAKDSE 83 (117)
T ss_dssp HHHHHHHHHHTTCEEE--EESSHHHHHHHHHHHCCSEEEECSSC-----SSSCHHHHHHHHHTT--CCCCEEEEESCCSH
T ss_pred HHHHHHHHHHCCCEEE--EECCHHHHHHHHHhcCCCEEEecccc-----CCCCccHHHHHHHhC--CCCCEEEEecCCCH
Confidence 4556666555666554 4678877644 556778988886321 112235677777553 37999999999999
Q ss_pred HHHHHHHHhCCCEEEEchHH
Q 018919 272 TDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~ 291 (349)
++..+++.+||+.. +-.||
T Consensus 84 ~~~~~a~~~Ga~d~-l~KP~ 102 (117)
T d2a9pa1 84 FDKVIGLELGADDY-VTKPF 102 (117)
T ss_dssp HHHHHHHHHTCSEE-EESSC
T ss_pred HHHHHHHHcCCCEE-EECCC
Confidence 99999999999986 45565
|
| >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.62 E-value=3.8 Score=34.84 Aligned_cols=76 Identities=22% Similarity=0.175 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HH----HHHHHHHhcCCcEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DE----DVKWLQTITKLPIL 208 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~----~i~~i~~~~~~pv~ 208 (349)
+.+...+.++++.+.|++.|.|.--++.+|.. ..+++- |+ .++++++. +.+|.
T Consensus 23 ~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~---------------------~is~~eE~~Rl~p~i~~~~~~-~~~iS 80 (270)
T d1eyea_ 23 DLDDAVKHGLAMAAAGAGIVDVGGESSRPGAT---------------------RVDPAVETSRVIPVVKELAAQ-GITVS 80 (270)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECC-----------------------------------HHHHHHHHHHHHHT-TCCEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCCCCE---------------------eeechhhcccccceeeeeccc-ceeec
Confidence 55666677778888999998876554432211 012222 32 35555553 56666
Q ss_pred EEEecCHHHHHHHHHcCCCEEE-Ee
Q 018919 209 VKGVLTAEDARIAVQAGAAGII-VS 232 (349)
Q Consensus 209 vK~v~~~~~a~~a~~~G~d~I~-v~ 232 (349)
+ ....++.|+.|+++|+|.|- ++
T Consensus 81 I-DT~~~~Va~~al~~Ga~iINDvs 104 (270)
T d1eyea_ 81 I-DTMRADVARAALQNGAQMVNDVS 104 (270)
T ss_dssp E-ECSCHHHHHHHHHTTCCEEEETT
T ss_pred h-HhhhHHHHHHHHhcCCeEEEecc
Confidence 4 45678999999999999886 54
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=80.57 E-value=3.5 Score=31.22 Aligned_cols=65 Identities=11% Similarity=-0.001 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEEEEec---
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILVKGVL--- 213 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~v~--- 213 (349)
.+.++.+.+.+++++.+..-.+.. . +.+.+.++.+++.- ++||++.+..
T Consensus 44 e~iv~a~~~~~~d~v~lS~~~~~~---~-----------------------~~~~~~~~~l~~~~~~~i~iivGG~~~~~ 97 (137)
T d1ccwa_ 44 ELFIKAAIETKADAILVSSLYGQG---E-----------------------IDCKGLRQKCDEAGLEGILLYVGGNIVVG 97 (137)
T ss_dssp HHHHHHHHHHTCSEEEEEECSSTH---H-----------------------HHHTTHHHHHHHTTCTTCEEEEEESCSSS
T ss_pred HHHHHHHHhcCCCEEEEeeccccc---h-----------------------HHHHHHHHHHHHhccCCCEEEEeCCcCCC
Confidence 345667778888988876543210 0 00023466666653 6899999963
Q ss_pred ---CHHHHHHHHHcCCCEE
Q 018919 214 ---TAEDARIAVQAGAAGI 229 (349)
Q Consensus 214 ---~~~~a~~a~~~G~d~I 229 (349)
.++++.++.+.|+|.|
T Consensus 98 ~~~~~~~~~~l~~~Gv~~i 116 (137)
T d1ccwa_ 98 KQHWPDVEKRFKDMGYDRV 116 (137)
T ss_dssp SCCHHHHHHHHHHTTCSEE
T ss_pred ccccHHHHHHHHHcCCCEE
Confidence 2467788889999998
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Probab=80.26 E-value=9.4 Score=28.37 Aligned_cols=93 Identities=15% Similarity=0.101 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHc--------CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc-CCCcEE
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQA--------GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVF 263 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~--------G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~-~~ipvi 263 (349)
.+.++..-+..+...-+-.+.+.++|...++. -.|.|.+.-+- . +...++.+.++++.-. .++|||
T Consensus 15 ~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~pdlillD~~m----P-~~dG~el~~~ir~~~~~~~iPvI 89 (140)
T d1k68a_ 15 IRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLDLNL----P-KKDGREVLAEIKSDPTLKRIPVV 89 (140)
T ss_dssp HHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC----S-SSCHHHHHHHHHHSTTGGGSCEE
T ss_pred HHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHhHHhhccCCCCEEEEeecc----c-cccChHHHHHHHhCcccCCCcEE
Confidence 45566655555555444457788888766542 25777775331 1 1223677777765321 269999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 264 LDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
.-.+-.+.+++.+++.+||+... -.|+
T Consensus 90 ~ls~~~~~~~~~~a~~~Ga~~yl-~KP~ 116 (140)
T d1k68a_ 90 VLSTSINEDDIFHSYDLHVNCYI-TKSA 116 (140)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEE-ECCS
T ss_pred EEeCCCCHHHHHHHHHCCCCEEE-ECCC
Confidence 99999999999999999999875 4565
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.13 E-value=7 Score=31.28 Aligned_cols=58 Identities=29% Similarity=0.405 Sum_probs=34.0
Q ss_pred HHHHHHHHhcC--CcEEEEEe-cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHH
Q 018919 194 EDVKWLQTITK--LPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 255 (349)
Q Consensus 194 ~~i~~i~~~~~--~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~ 255 (349)
+.++.+|+..+ ..+++-++ ......+.+.++|+|.+++ ||.....+-+.+.+.++.+.
T Consensus 144 ~~~~~~r~~~~~~~~i~~pGI~~~~~~~~~ai~~Gad~iVv----GR~I~~a~dP~~aa~~i~~~ 204 (206)
T d2czda1 144 ERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIV----GRAIYNAPNPREAAKAIYDE 204 (206)
T ss_dssp HHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHTCSEEEE----CHHHHTSSSHHHHHHHHHHH
T ss_pred hhhhhhhhhhcccceEECCCccccCCCHHHHHHhCCCEEEE----ChhhccCCCHHHHHHHHHHH
Confidence 45666776653 44554444 3345677788999999998 33222333345556666554
|