Citrus Sinensis ID: 018937

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQQPGQTGGGTGIGFIHPYCFSLFFLLLELFFTTILKMLKPNGIPYRSFIASVEHLSVK
Secondary Structure (PSIPRED)
cHHHHccHHHHHHHccHHHHHHHHHccHHHHHHHHHccHHHHcccccHHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHHHccccHHHHHcccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHccHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHccHHHHHHHccHHHHHHHHHHcHHHHHHHHHccHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHccHHHHHHHHHHHHcHHHHHHHHHccHHHcccHHHcHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHccccccEEEEEEEEcccc
Coil and Loop (DISEMBL)
mreimnmpvvqnlmnnpEIMRNLimnnpqmreiidrnpelahilndpSTLRQTLEAARNPELMREMMRNTDRamsniesspEGFNMLRRMYETVqepflnatsmagnagndnsnPFAALLgtqggnqaregsnnpstttsesttgspapntnplpnpwmaagtggaqtnttrssslgdarpqtpagiaglsspgfedIFGAMQDTNSLNQMLQNPAVTQMMQSLLsnpqymnqilglnpqlrsmVDSNSQLREMIqnpeflrqltnpeTMQQMVTLQQFLLTQLgraqstqqpgqtgggtgigfihPYCFSLFFLLLELFFTTILKMlkpngipyrsfIASVEHLSVK
Flexible Loop (DISEMBL)
MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQQPGQTGGGTGIGFIHPYCFSLFFLLLELFFTTILKMLKPNGIPYRsfiasvehlsvk
Low Complexity Region (SEG)
MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARegsnnpstttsesttgspAPNTNPLPNPWMaagtggaqtnttRSSSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQStqqpgqtgggtgigFIHPYCfslfflllelffTTILKMLKPNGIPYRSFIASVEHLSVK
Disordered region (IsUnstruct)
**********************LI*****************************************************************************************************************************************************************************************************************IL*************************************MVTLQQFLLTQL*************GGTGIGFIHPYCFSLFFLLLELFFTTILKMLKPNGIPYRSFIASV******
Disordered Region (DISOPRED)
**E***MPVVQNLMNNP*************************************************************************************************************************************************************************************************************************************************************************************************PYCFSLFFLLLELFFTTILKMLKPNGIPYRSFIASVEHLS**
Disordered Region (DISEMBL)
MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQG************************PNTNPLPNPWMAAGT******************QTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLG***********GGGTGIGFIHPYCFSLFFLLLELFFTTILKMLKPNGIPYRSFIASVEHLSVK
Disordered Region (DISPRO)
MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMA*N*****************************************************************************AGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQQPGQTGGGTGIGFIHPYCFSLFFLLLELFFTTILKMLKPNGIPYRSFIASVEHLS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQQPGQTGGGTGIGFIHPYCFSLFFLLLELFFTTILKMLKPNGIPYRSFIASVEHLSVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q9JJP9	582	Ubiquilin-1 OS=Rattus nor	yes	no	0.75	0.448	0.398	3e-45
Q5R684	589	Ubiquilin-1 OS=Pongo abel	yes	no	0.807	0.477	0.363	4e-43
Q9UMX0	589	Ubiquilin-1 OS=Homo sapie	yes	no	0.807	0.477	0.363	4e-43
Q8R317	582	Ubiquilin-1 OS=Mus muscul	yes	no	0.755	0.451	0.368	1e-41
Q9NRR5	601	Ubiquilin-4 OS=Homo sapie	no	no	0.744	0.430	0.375	1e-37
Q99NB8	596	Ubiquilin-4 OS=Mus muscul	no	no	0.744	0.434	0.369	1e-37
Q9NIF3	523	Ubiquilin OS=Dictyosteliu	yes	no	0.382	0.254	0.459	2e-32
Q9QZM0	638	Ubiquilin-2 OS=Mus muscul	no	no	0.327	0.178	0.546	6e-31
Q9UHD9	624	Ubiquilin-2 OS=Homo sapie	no	no	0.215	0.120	0.603	7e-31
Q8C5U9	658	Ubiquilin-3 OS=Mus muscul	no	no	0.405	0.214	0.381	5e-26

>sp|Q9JJP9|UBQL1_RAT Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV=1

 Score =  182 bits (462), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 175/311 (56%), Gaps = 50/311 (16%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P+ +RQTLE ARNP
Sbjct: 177 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPNIMRQTLELARNP 236

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
            +M+EMMRN +R +SN+ES P G+N LRRMY  +QEP LNA            NPFA+L+
Sbjct: 237 AMMQEMMRNQERDLSNLESIPGGYNALRRMYTDIQEPMLNAAQE-----QFGGNPFASLV 291

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWM--------AAGTGGAQTNTTR 172
                          S +++E T  S   N +PLPNPW         A+G+ G+ TNT  
Sbjct: 292 S--------------SPSSAEGTQPSRTENRDPLPNPWAPQTPQSSPASGSTGSTTNTV- 336

Query: 173 SSSLGDARPQTPAGI----------AGLS---SPGFEDIFGAMQDTNSLNQ-MLQNPAVT 218
           S+S G+A   TPAG           AG S   +PG + +   + +   L Q ML  P + 
Sbjct: 337 STSAGNAT-STPAGQGTSGPNLVPGAGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMR 395

Query: 219 QMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMI-------QNPEFLRQLTNPETMQ 271
            MMQSL  NP    Q++  NP          Q+R+ +       QNP+ L  ++NP  MQ
Sbjct: 396 SMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQ 455

Query: 272 QMVTLQQFLLT 282
            ++ +QQ L T
Sbjct: 456 ALLQIQQGLQT 466

Links CD47 to the cytoskeleton. Promotes the surface expression of GABA-A receptors. Promotes the accumulation of uncleaved PSEN1 and PSEN2 by stimulating their biosynthesis. Has no effect on PSEN1 and PSEN2 degradation.
Rattus norvegicus (taxid: 10116)

>sp|Q5R684|UBQL1_PONAB Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1

 Score =  175 bits (444), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 179/330 (54%), Gaps = 49/330 (14%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct: 186 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNP 245

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
            +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA+L+
Sbjct: 246 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGG-----NPFASLV 300

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDAR 180
                          +T++ E +  S   N +PLPNPW    +  +  ++  +S++G   
Sbjct: 301 S--------------NTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTT 346

Query: 181 PQTPAGIAGLS----------------SPGFEDIFGAMQDTNSLNQ-MLQNPAVTQMMQS 223
             T +G +G S                +PG + +   + +   L Q ML  P +  MMQS
Sbjct: 347 GSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQS 406

Query: 224 LLSNPQYMNQILGLNPQLRSMVDSNSQLREMI-------QNPEFLRQLTNPETMQQMVTL 276
           L  NP    Q++  NP          Q+R+ +       QNP+ L  ++NP  MQ ++ +
Sbjct: 407 LSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQI 466

Query: 277 QQFLLTQLGRAQSTQQPGQTGGGT-GIGFI 305
           QQ L T      +T+ PG   G T G+G +
Sbjct: 467 QQGLQT-----LATEAPGLIPGFTPGLGAL 491

Links CD47 to the cytoskeleton. Promotes the surface expression of GABA-A receptors (By similarity). Promotes the accumulation of uncleaved PSEN1 and PSEN2 by stimulating their biosynthesis. Has no effect on PSEN1 and PSEN2 degradation.

Pongo abelii (taxid: 9601)

>sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2

 Score =  175 bits (444), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 179/330 (54%), Gaps = 49/330 (14%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct: 186 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNP 245

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
            +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA+L+
Sbjct: 246 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGG-----NPFASLV 300

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDAR 180
                          +T++ E +  S   N +PLPNPW    +  +  ++  +S++G   
Sbjct: 301 S--------------NTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTT 346

Query: 181 PQTPAGIAGLS----------------SPGFEDIFGAMQDTNSLNQ-MLQNPAVTQMMQS 223
             T +G +G S                +PG + +   + +   L Q ML  P +  MMQS
Sbjct: 347 GSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQS 406

Query: 224 LLSNPQYMNQILGLNPQLRSMVDSNSQLREMI-------QNPEFLRQLTNPETMQQMVTL 276
           L  NP    Q++  NP          Q+R+ +       QNP+ L  ++NP  MQ ++ +
Sbjct: 407 LSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQI 466

Query: 277 QQFLLTQLGRAQSTQQPGQTGGGT-GIGFI 305
           QQ L T      +T+ PG   G T G+G +
Sbjct: 467 QQGLQT-----LATEAPGLIPGFTPGLGAL 491

Links CD47 to the cytoskeleton. Promotes the surface expression of GABA-A receptors (By similarity). Promotes the accumulation of uncleaved PSEN1 and PSEN2 by stimulating their biosynthesis. Has no effect on PSEN1 and PSEN2 degradation.

Homo sapiens (taxid: 9606)

>sp|Q8R317|UBQL1_MOUSE Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 166/309 (53%), Gaps = 46/309 (14%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct: 177 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNP 236

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
            +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP LNA            NPFA+L+
Sbjct: 237 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFASLV 291

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPW-------------------MAA 161
            +              ++++E T  S   N +PLPNPW                     +
Sbjct: 292 SS--------------SSSAEGTQPSRTENRDPLPNPWAPQTSQSSPASGTTGSTTNTMS 337

Query: 162 GTGGAQTNTTRSSSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQ-MLQNPAVTQM 220
            +GG  T+T    S         AG +  ++PG + +   + +   L Q ML  P +  M
Sbjct: 338 TSGGTATSTPAGQSTSGPSLVPGAGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSM 397

Query: 221 MQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMI-------QNPEFLRQLTNPETMQQM 273
           +QSL  NP    Q++  NP          Q+R+ +       QNP+ L  ++NP  MQ +
Sbjct: 398 LQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQAL 457

Query: 274 VTLQQFLLT 282
           + +QQ L T
Sbjct: 458 LQIQQGLQT 466

Links CD47 to the cytoskeleton. Promotes the surface expression of GABA-A receptors. Promotes the accumulation of uncleaved PSEN1 and PSEN2 by stimulating their biosynthesis. Has no effect on PSEN1 and PSEN2 degradation.

Mus musculus (taxid: 10090)

>sp|Q9NRR5|UBQL4_HUMAN Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2

 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 169/306 (55%), Gaps = 47/306 (15%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           + +IM  P+VQ++M+NP++MR++IM NPQM+++++RNPE++H+LN+P  +RQT+E ARNP
Sbjct: 196 LSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNP 255

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEP-FLNATSMAGNAGNDNSNPFAAL 119
            +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP F  A    GN      NPF++L
Sbjct: 256 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQFGN------NPFSSL 309

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSP--APNTNPLPNPWMAAGTGGAQTNTTRSSSLG 177
            G                  S+S++  P    N  PLPNPW  +        +    + G
Sbjct: 310 AG-----------------NSDSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGG 352

Query: 178 DARPQT------PAGI--AGLSSPGFE--DIFGAMQDTNSLNQMLQN----PAVTQMMQS 223
               Q       P GI  A L S  F   ++   +Q  +   Q++QN    P +  MMQ+
Sbjct: 353 SGTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQT 412

Query: 224 LLSNPQYMNQIL------GLNPQLRSMVDSNSQL-REMIQNPEFLRQLTNPETMQQMVTL 276
           L  NP +  Q++        NPQL+  +     +  + +QNPE L  LTNP  MQ ++ +
Sbjct: 413 LAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQI 472

Query: 277 QQFLLT 282
           QQ L T
Sbjct: 473 QQGLQT 478

Plays a role in the regulation of proteasomal protein degradation. Depending on the case, may promote or inhibit proteasomal protein degradation.

Homo sapiens (taxid: 9606)

>sp|Q99NB8|UBQL4_MOUSE Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 170/306 (55%), Gaps = 47/306 (15%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           + +IM  P+VQ++M+NP++MR++IM NPQM+++++RNPE++H+LN+P  +RQT+E ARNP
Sbjct: 191 LSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNP 250

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEP-FLNATSMAGNAGNDNSNPFAAL 119
            +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP F  A    GN      NPF++L
Sbjct: 251 AMMQEMMRNQDRALSNLESVPGGYNALRRMYTDIQEPMFTAAREQFGN------NPFSSL 304

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPW---------------MAAGTG 164
            G      +   S+ P  T           N  PLPNPW                  G+G
Sbjct: 305 AGN-----SDNSSSQPLRTE----------NREPLPNPWSPSPPTSQAPGSGGEGTGGSG 349

Query: 165 GAQTNTTRSSSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQ-MLQNPAVTQMMQS 223
            +Q + T S+  G       +G+   +SP  + +   + +   L Q ++  P +  MMQ+
Sbjct: 350 TSQVHPTVSNPFGINAASLGSGM--FNSPEMQALLQQISENPQLMQNVISAPYMRTMMQT 407

Query: 224 LLSNPQYMNQIL------GLNPQLRSMVDSNSQL-REMIQNPEFLRQLTNPETMQQMVTL 276
           L  NP +  Q++        NPQL+  +     +  + +QNPE L  LTNP  MQ ++ +
Sbjct: 408 LAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQI 467

Query: 277 QQFLLT 282
           QQ L T
Sbjct: 468 QQGLQT 473

Plays a role in the regulation of proteasomal protein degradation. Depending on the case, may promote or inhibit proteasomal protein degradation.

Mus musculus (taxid: 10090)

>sp|Q9NIF3|UBQL_DICDI Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 100/159 (62%), Gaps = 26/159 (16%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           ++E+ N  ++ +L++NP+I R+++M NP+MRE+++ NPE+A +L+DP  LRQ+LE  RNP
Sbjct: 113 IQEMFNSRMMDSLLDNPDIFRDMMMGNPEMREVLNNNPEMAQMLSDPRQLRQSLEMMRNP 172

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGND-NSNPFAAL 119
           ELMREMMRN DRAM NIE+ PEGFN+LRRMY  +QEP +NA +    + N  NSNP    
Sbjct: 173 ELMREMMRNADRAMINIENHPEGFNLLRRMYTDIQEPLMNAANQQAASQNQTNSNPI--- 229

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPW 158
                                  T     PN+ PLPNPW
Sbjct: 230 ----------------------QTNTDANPNSQPLPNPW 246

Stable protein which acts as an antagonist of nosA by repressing cellular differentiation after the tight-aggregate stage, when cells differentiate into two precursor cell types, prespore and prestalk cells, prior to the formation of fruiting bodies.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=2

 Score =  135 bits (339), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 87/119 (73%), Gaps = 5/119 (4%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct: 193 MIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNP 252

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAAL 119
            +M+EMMRN D A+SN+ES P G+N LRRMY  +QEP LNA            NPFA +
Sbjct: 253 AMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFATV 306

Increases the half-life of proteins destined to be degraded by the proteasome; may modulate proteasome-mediated protein degradation (By similarity). Links CD47 to vimentin-containing intermediate filaments of the cytoskeleton.

Mus musculus (taxid: 10090)

>sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2

 Score =  135 bits (339), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 82/101 (81%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct: 182 MIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNP 241

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNA 101
            +M+EMMRN D A+SN+ES P G+N LRRMY  +QEP LNA
Sbjct: 242 AMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNA 282

Increases the half-life of proteins destined to be degraded by the proteasome; may modulate proteasome-mediated protein degradation.

Homo sapiens (taxid: 9606)

>sp|Q8C5U9|UBQL3_MOUSE Ubiquilin-3 OS=Mus musculus GN=Ubqln3 PE=2 SV=1

 Score =  119 bits (297), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 19/160 (11%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           + ++++ P +Q L++N  ++R L+++NP M+ +I +NPE+ HILN+P  +RQT+E  RNP
Sbjct: 168 VAQLVDDPFIQGLLSNTGLVRQLVLDNPHMQHLIQQNPEIGHILNNPEIMRQTMEFLRNP 227

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
            +M+EMMR+ DRA+SN+ES P G+N+LR MY  + +P LNA            NPF    
Sbjct: 228 SMMQEMMRSQDRALSNLESIPGGYNVLRTMYTDIMDPMLNAVQEQFGG-----NPFVTAT 282

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMA 160
                  + +    PS T           N +PLPNPW +
Sbjct: 283 TASTTTTSSQ----PSRTE----------NCDPLPNPWTS 308

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
255561391	548	plant ubiquilin, putative [Ricinus commu	0.839	0.532	0.813	1e-138
224081475	549	predicted protein [Populus trichocarpa]	0.824	0.522	0.789	1e-116
449456869	556	PREDICTED: ubiquilin-1-like [Cucumis sat	0.859	0.537	0.754	1e-112
359474971	558	PREDICTED: ubiquilin-1-like [Vitis vinif	0.839	0.523	0.754	1e-110
147822388	566	hypothetical protein VITISV_002886 [Viti	0.839	0.515	0.750	1e-109
224131864	567	predicted protein [Populus trichocarpa]	0.859	0.527	0.718	1e-109
356501749	545	PREDICTED: ubiquilin-1-like [Glycine max	0.847	0.541	0.684	1e-108
449454281	551	PREDICTED: ubiquilin-2-like isoform 1 [C	0.862	0.544	0.712	1e-108
356559218	553	PREDICTED: ubiquilin-1-like isoform 2 [G	0.847	0.533	0.690	1e-107
449454283	546	PREDICTED: ubiquilin-2-like isoform 2 [C	0.847	0.540	0.716	1e-107

>gi|255561391|ref|XP_002521706.1| plant ubiquilin, putative [Ricinus communis] gi|223539097|gb|EEF40693.1| plant ubiquilin, putative [Ricinus communis]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/301 (81%), Positives = 268/301 (89%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMN PVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP
Sbjct: 170 MREIMNTPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 229

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNAT+MAGN G D++NPFAALL
Sbjct: 230 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMAGNTGGDSANPFAALL 289

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDAR 180
           G Q GNQA + + NPS  +SESTTGSPAPNTNPLPNPW A GTGGA  NT RSS+ GDAR
Sbjct: 290 GNQAGNQASDATTNPSIASSESTTGSPAPNTNPLPNPWTATGTGGALNNTARSSNTGDAR 349

Query: 181 PQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQ 240
           PQTP G+ GL  P F+ +FGAM D+N ++QMLQNPA++QMMQSLLSNPQYMNQ+LG NPQ
Sbjct: 350 PQTPVGLGGLGLPEFDSMFGAMPDSNVMSQMLQNPAISQMMQSLLSNPQYMNQMLGSNPQ 409

Query: 241 LRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQQPGQTGGGT 300
            RSM+DSNSQ REM+QNPEFLRQLT+PETMQQ++T QQ LL+Q GR QS Q+PGQTG GT
Sbjct: 410 FRSMLDSNSQFREMMQNPEFLRQLTSPETMQQLLTFQQALLSQFGRQQSNQEPGQTGAGT 469

Query: 301 G 301
           G
Sbjct: 470 G 470

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081475|ref|XP_002306425.1| predicted protein [Populus trichocarpa] gi|222855874|gb|EEE93421.1| predicted protein [Populus trichocarpa]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/290 (78%), Positives = 260/290 (89%), Gaps = 3/290 (1%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MR+IMN PVVQNLMNNPEIMRNL+MNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP
Sbjct: 174 MRDIMNTPVVQNLMNNPEIMRNLLMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 233

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNAT+MAGNAG D++NPFAALL
Sbjct: 234 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMAGNAGGDSANPFAALL 293

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDAR 180
           GTQ GNQAR+GS N STT+SE+TTGSPAPNTNPLPNPW    +GGAQTNTTRS+   D R
Sbjct: 294 GTQTGNQARDGSTNLSTTSSETTTGSPAPNTNPLPNPW---SSGGAQTNTTRSNPTSDTR 350

Query: 181 PQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQ 240
           PQ P G+ GL  P  +++F AM D   ++Q++QNPA++QMMQS +S+PQYMNQILG+NPQ
Sbjct: 351 PQAPTGLGGLGLPDLDNMFSAMPDAAMVSQLMQNPAISQMMQSFMSSPQYMNQILGMNPQ 410

Query: 241 LRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQST 290
           LRSM+DSN QLREM+QNPEFLRQLT+PETMQQ++T QQ L++QLG+ QST
Sbjct: 411 LRSMLDSNPQLREMMQNPEFLRQLTSPETMQQLLTFQQSLMSQLGQRQST 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456869|ref|XP_004146171.1| PREDICTED: ubiquilin-1-like [Cucumis sativus] gi|449495107|ref|XP_004159736.1| PREDICTED: ubiquilin-1-like [Cucumis sativus]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/301 (75%), Positives = 257/301 (85%), Gaps = 2/301 (0%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMNMP +QN+MNNP+IMRNLIMNNPQMREI+DRNPELAHILNDPSTLRQTLE ARNP
Sbjct: 180 MREIMNMPAIQNIMNNPDIMRNLIMNNPQMREIMDRNPELAHILNDPSTLRQTLETARNP 239

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNAT+M+GNAGND SNPFAALL
Sbjct: 240 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMSGNAGNDGSNPFAALL 299

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDAR 180
           GT GGN     + N STTTS++T GSP+PNTNPLPNPW  A TGG QTN+TRS+   +A 
Sbjct: 300 GT-GGNVTNNATTNTSTTTSDTTNGSPSPNTNPLPNPWSPASTGGTQTNSTRSNPTPNAS 358

Query: 181 PQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQ 240
            Q P G+AGL  P  E + GA  D   LNQ++QNPA++QMMQS++SNPQY+NQILGLNPQ
Sbjct: 359 AQVPTGLAGLGLPNLEGMLGATPDAAGLNQLMQNPAISQMMQSVMSNPQYVNQILGLNPQ 418

Query: 241 LRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQQPGQTGGGT 300
           LR ++DSN QLREM+Q+PEFLRQLT+P+TMQQM T+QQ LL+QLGR Q T   GQTG GT
Sbjct: 419 LRGLLDSNPQLREMMQDPEFLRQLTSPDTMQQMFTMQQQLLSQLGR-QPTLNQGQTGAGT 477

Query: 301 G 301
           G
Sbjct: 478 G 478

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474971|ref|XP_002282473.2| PREDICTED: ubiquilin-1-like [Vitis vinifera]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/297 (75%), Positives = 248/297 (83%), Gaps = 5/297 (1%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMNMP +QNLMNNP++MR+LIMNNPQMREIIDRNPELAHILND   LRQTLEAARNP
Sbjct: 180 MREIMNMPAIQNLMNNPDLMRSLIMNNPQMREIIDRNPELAHILNDTGILRQTLEAARNP 239

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGND-NSNPFAAL 119
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYE VQEPFLNAT+M+G++GN   SNPFAAL
Sbjct: 240 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMSGDSGNTLGSNPFAAL 299

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQT-NTTRSSSLGD 178
           LG QGG QAR+GSNNPSTT +E+T G  APNTNPLPNPW A   GGAQT NT RS   GD
Sbjct: 300 LGNQGGAQARDGSNNPSTTGAEATAGLTAPNTNPLPNPWSA---GGAQTNNTARSIPAGD 356

Query: 179 ARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLN 238
           AR  + AG+ GL  P  E +   M D    NQ+LQNPAV+QMMQSLLSNPQYMNQIL  N
Sbjct: 357 ARAPSVAGLGGLGLPEMERMLNGMPDATLFNQLLQNPAVSQMMQSLLSNPQYMNQILNFN 416

Query: 239 PQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQQPGQ 295
           PQLR M+D N QLRE++QNPE LRQLT+PETMQQM++LQQ LL+QL R QSTQ+PGQ
Sbjct: 417 PQLRGMLDMNPQLREIMQNPELLRQLTSPETMQQMMSLQQSLLSQLNRQQSTQEPGQ 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822388|emb|CAN59899.1| hypothetical protein VITISV_002886 [Vitis vinifera]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/297 (75%), Positives = 247/297 (83%), Gaps = 5/297 (1%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMNMP +QNLMNNP++MR+LIMNNPQMREIIDRNPELAHILND   LRQTLEAARNP
Sbjct: 188 MREIMNMPAIQNLMNNPDLMRSLIMNNPQMREIIDRNPELAHILNDTGILRQTLEAARNP 247

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGND-NSNPFAAL 119
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYE VQEPFLNAT+M+G++GN   SNPFAAL
Sbjct: 248 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMSGDSGNTLGSNPFAAL 307

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQT-NTTRSSSLGD 178
           LG QGG QAR+GSNNPSTT +E+T G  APNTNPLPNPW A   GGAQT NT RS   GD
Sbjct: 308 LGNQGGAQARDGSNNPSTTGAEATAGLTAPNTNPLPNPWSA---GGAQTNNTARSIPAGD 364

Query: 179 ARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLN 238
           AR  + AG+  L  P  E +   M D    NQ+LQNPAV+QMMQSLLSNPQYMNQIL  N
Sbjct: 365 ARAPSVAGLGRLGLPEMERMLNGMPDATLFNQLLQNPAVSQMMQSLLSNPQYMNQILNFN 424

Query: 239 PQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQQPGQ 295
           PQLR M+D N QLRE++QNPE LRQLT+PETMQQM++LQQ LL+QL R QSTQ+PGQ
Sbjct: 425 PQLRGMLDMNPQLREIMQNPELLRQLTSPETMQQMMSLQQSLLSQLNRQQSTQEPGQ 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131864|ref|XP_002328127.1| predicted protein [Populus trichocarpa] gi|222837642|gb|EEE76007.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/305 (71%), Positives = 250/305 (81%), Gaps = 6/305 (1%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMN P +Q+LMNNPE++R+L+M+NPQMREI+DRNPELAH+LNDPS LRQTLEAARNP
Sbjct: 187 MREIMNTPAMQSLMNNPELIRSLMMSNPQMREIMDRNPELAHVLNDPSILRQTLEAARNP 246

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGND-NSNPFAAL 119
           ELMREMMR+TDRAMSNIES+PEGFNMLRRMYE VQEPFLNAT+M GNAG+D  SNPFAAL
Sbjct: 247 ELMREMMRHTDRAMSNIESTPEGFNMLRRMYENVQEPFLNATTMGGNAGSDLGSNPFAAL 306

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTN-TTRSSSLGD 178
           LG QGG Q R+ SNNPSTT SE+T G  APNTNPLPNPW  A  GG QTN TTR +  G+
Sbjct: 307 LGNQGGTQVRDASNNPSTTGSEATGGLTAPNTNPLPNPWNNAA-GGTQTNSTTRPNPAGN 365

Query: 179 ARPQ--TPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILG 236
            R       G+ GL  PG E +F  M D+N +NQ+LQNPAV+QMMQ++LSNP+YMNQ+L 
Sbjct: 366 VRASGLGDLGLGGLGLPGMESMFNGMPDSNQMNQLLQNPAVSQMMQTVLSNPEYMNQMLN 425

Query: 237 LNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQQPGQT 296
            NPQLRSMVDSN QLREM+QNPE LRQLT+PETMQQM+ LQQ LL QL R QSTQ+  Q 
Sbjct: 426 FNPQLRSMVDSNPQLREMMQNPELLRQLTSPETMQQMLALQQSLLPQL-RQQSTQEAAQP 484

Query: 297 GGGTG 301
           G  TG
Sbjct: 485 GAPTG 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501749|ref|XP_003519686.1| PREDICTED: ubiquilin-1-like [Glycine max]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/304 (68%), Positives = 247/304 (81%), Gaps = 9/304 (2%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           +REIMN P +QNL+NNPEI+RNLIMNNPQM+E++DRNPELAHILNDPSTLRQTLEA RNP
Sbjct: 170 VREIMNSPTMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNP 229

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
           E+MREMMRNTDRAMSNIESSPEGFNMLRRMYE +QEPFLNAT+MAGN GN+N    AA+ 
Sbjct: 230 EIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNN----AAVS 285

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLG-DA 179
           GT GG  AR+ S NPSTT+SE+T GSP PNTNPLPNPW + GTGGAQ N+ RS + G DA
Sbjct: 286 GTHGG-HARDPSTNPSTTSSEATAGSPLPNTNPLPNPWSSTGTGGAQNNSRRSLTTGVDA 344

Query: 180 RPQTPAGIAGLSSPGFEDIFG--AMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGL 237
           R Q P G+ G   P  E + G  AM D   L Q++QNPA++QMMQS+LSNPQ +NQILG 
Sbjct: 345 RQQGPTGLGGHGLPDLESMLGGSAMPDPALLTQLMQNPAISQMMQSMLSNPQTLNQILGA 404

Query: 238 NPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQQPGQTG 297
           N + R M D NS LRE++QNPEFLR  ++PET+QQ+++ QQ L++QLG+ QST + GQTG
Sbjct: 405 NTEQRGMPDLNS-LREVMQNPEFLRLFSSPETLQQLLSFQQTLMSQLGQQQSTWESGQTG 463

Query: 298 GGTG 301
           GGTG
Sbjct: 464 GGTG 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454281|ref|XP_004144884.1| PREDICTED: ubiquilin-2-like isoform 1 [Cucumis sativus] gi|449473217|ref|XP_004153820.1| PREDICTED: ubiquilin-2-like isoform 1 [Cucumis sativus]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/303 (71%), Positives = 241/303 (79%), Gaps = 3/303 (0%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMNMP +QNLMNNP++MR LIM+NPQMR+IIDRNPELAHILNDP  LRQTLEAARNP
Sbjct: 174 MREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNP 233

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGND-NSNPFAAL 119
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYE VQEPFLNAT+MAGNAGND +SNPFAAL
Sbjct: 234 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDSSSNPFAAL 293

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDA 179
           L  QGG QAR  SNN  +TT   TTG+ APNTNPLPNPW    +GG QT TT+ +  GD 
Sbjct: 294 LANQGGAQARNESNN--STTGSETTGNAAPNTNPLPNPWGNNASGGTQTTTTQPTPAGDT 351

Query: 180 RPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNP 239
           R     G+ G      +   GA+ D   LNQ LQNPA++QMMQSLLSNPQYMNQIL LNP
Sbjct: 352 RAPGIGGLGGAGRTNMDRFAGAVPDPAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNP 411

Query: 240 QLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQQPGQTGGG 299
           QLRSMVD N QLREM+QNPEF+RQLTNPE MQQM+++QQ LL+ L R  S+Q   QTG  
Sbjct: 412 QLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQSLLSTLNRQPSSQDAAQTGAA 471

Query: 300 TGI 302
            G+
Sbjct: 472 AGV 474

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559218|ref|XP_003547897.1| PREDICTED: ubiquilin-1-like isoform 2 [Glycine max]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/304 (69%), Positives = 248/304 (81%), Gaps = 9/304 (2%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           +REIMN P +QNLMNNPEI+RNLIMNNPQM+E++DRNPELAHILNDPSTLRQTLEA RNP
Sbjct: 178 VREIMNSPTMQNLMNNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNP 237

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
           E+MREMMRNTDRAMSNIESSPEGFNMLRRMYE +QEPFLNAT+MAGN GN+N    AA+ 
Sbjct: 238 EIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNN----AAVS 293

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLG-DA 179
           GT GG  AR+ S NPSTT+SE+T GSP PNTNPLPNPW + GTGGAQ N  RS + G DA
Sbjct: 294 GTHGG-HARDRSTNPSTTSSEATAGSPLPNTNPLPNPWSSTGTGGAQNNPRRSLTTGVDA 352

Query: 180 RPQTPAGIAGLSSPGFEDIFG--AMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGL 237
           R Q P G+ GL  P  E + G  AM D   L Q++QNPA++QMMQS+LSNPQ +NQILG 
Sbjct: 353 RQQGPTGLGGLGLPDLESMMGGSAMPDAALLTQLMQNPAISQMMQSMLSNPQTLNQILGA 412

Query: 238 NPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQQPGQTG 297
           N + R M D NS LRE++QNPEFLR  ++PET+QQ+++ QQ L++QLG+ QST++ GQTG
Sbjct: 413 NTEQRGMPDLNS-LREVMQNPEFLRLFSSPETLQQLLSFQQALMSQLGQQQSTRESGQTG 471

Query: 298 GGTG 301
           GGTG
Sbjct: 472 GGTG 475

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454283|ref|XP_004144885.1| PREDICTED: ubiquilin-2-like isoform 2 [Cucumis sativus] gi|449473220|ref|XP_004153821.1| PREDICTED: ubiquilin-2-like isoform 2 [Cucumis sativus]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/303 (71%), Positives = 240/303 (79%), Gaps = 8/303 (2%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMNMP +QNLMNNP++MR LIM+NPQMR+IIDRNPELAHILNDP  LRQTLEAARNP
Sbjct: 174 MREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNP 233

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGND-NSNPFAAL 119
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYE VQEPFLNAT+MAGNAGND +SNPFAAL
Sbjct: 234 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDSSSNPFAAL 293

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDA 179
           L  QGG QAR  SNN STT SE TTG+ APNTNPLPNPW        QT TT+ +  GD 
Sbjct: 294 LANQGGAQARNESNN-STTGSE-TTGNAAPNTNPLPNPWGG-----TQTTTTQPTPAGDT 346

Query: 180 RPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNP 239
           R     G+ G      +   GA+ D   LNQ LQNPA++QMMQSLLSNPQYMNQIL LNP
Sbjct: 347 RAPGIGGLGGAGRTNMDRFAGAVPDPAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNP 406

Query: 240 QLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQQPGQTGGG 299
           QLRSMVD N QLREM+QNPEF+RQLTNPE MQQM+++QQ LL+ L R  S+Q   QTG  
Sbjct: 407 QLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQSLLSTLNRQPSSQDAAQTGAA 466

Query: 300 TGI 302
            G+
Sbjct: 467 AGV 469

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2059682	551	DSK2 "AT2G17200" [Arabidopsis	0.793	0.500	0.610	5.3e-88
TAIR|locus:2059677	538	DSK2a "AT2G17190" [Arabidopsis	0.795	0.514	0.609	2.9e-87
UNIPROTKB|Q95M59	595	UBQLN1 "Uncharacterized protei	0.764	0.447	0.389	5e-44
UNIPROTKB|Q9UMX0	589	UBQLN1 "Ubiquilin-1" [Homo sap	0.764	0.451	0.382	1e-43
UNIPROTKB|H9L0E0	559	UBQLN4 "Uncharacterized protei	0.752	0.468	0.363	2.8e-43
UNIPROTKB|H9L0E1	561	UBQLN4 "Uncharacterized protei	0.752	0.467	0.363	2.8e-43
UNIPROTKB|I3LSM3	589	UBQLN1 "Uncharacterized protei	0.764	0.451	0.379	4.5e-43
MGI|MGI:1860283	638	Ubqln2 "ubiquilin 2" [Mus musc	0.755	0.412	0.367	2.5e-42
MGI|MGI:1860276	582	Ubqln1 "ubiquilin 1" [Mus musc	0.758	0.453	0.386	3.2e-42
UNIPROTKB|E2RTI3	623	UBQLN2 "Uncharacterized protei	0.755	0.422	0.364	6.6e-42

TAIR|locus:2059682 DSK2 "AT2G17200" [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 177/290 (61%), Positives = 208/290 (71%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             +R++MN P +QNLMNNPE MR++IMNNPQMRE++DRNPEL H+LNDPS LRQTLEAARNP
Sbjct:   171 IRDMMNTPAIQNLMNNPEFMRSMIMNNPQMRELVDRNPELGHVLNDPSILRQTLEAARNP 230

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDN-SNPFAAL 119
             ELMREMMRNTDRAMSNIES PEGFNMLRRMYE VQEP +NAT+M+GNAGN+  SNPFAAL
Sbjct:   231 ELMREMMRNTDRAMSNIESMPEGFNMLRRMYENVQEPLMNATTMSGNAGNNTGSNPFAAL 290

Query:   120 LGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDA 179
             LG QG                        PN NPLPNPW             R++  GDA
Sbjct:   291 LGNQG--VTTQGSDASNNSSTPNAGTGTIPNANPLPNPW--GATGGQTTAPGRTNVGGDA 346

Query:   180 RPQTPAGIAGLSSPG---------FEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQY 230
             R     G+ GL S G          +   GA  D + L+Q+LQNPA++QMMQS+ SNPQY
Sbjct:   347 RSPGLGGLGGLGSLGGLGGLGMLGADSPLGATPDASQLSQLLQNPAISQMMQSVFSNPQY 406

Query:   231 MNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFL 280
             MNQ++ LNPQLRSM+DSN QLREM+QNP+FLRQ ++PE MQQM+TLQQ L
Sbjct:   407 MNQLMSLNPQLRSMLDSNPQLREMMQNPDFLRQFSSPEMMQQMMTLQQSL 456

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2059677 DSK2a "AT2G17190" [Arabidopsis thaliana (taxid:3702)]

 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 173/284 (60%), Positives = 206/284 (72%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             +RE+MN P +QNLMNNPE MR++IMNNPQMRE++DRNPEL H+LNDPS LRQTLEAARNP
Sbjct:   166 IREMMNTPAIQNLMNNPEFMRSMIMNNPQMRELVDRNPELGHVLNDPSILRQTLEAARNP 225

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGND-NSNPFAAL 119
             ELMREMMRNTDRAMSNIES PEGFNMLRRMYE VQEP +NAT+M+ NAGN+ +SNPFAAL
Sbjct:   226 ELMREMMRNTDRAMSNIESMPEGFNMLRRMYENVQEPLMNATTMSENAGNNTSSNPFAAL 285

Query:   120 LGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDA 179
             LG QG                        PN NPLPNPW              ++ LG  
Sbjct:   286 LGNQG---VTTQGSDTSNNISAPNAETGTPNANPLPNPW-GATAGQTTAPGRTNAGLGGL 341

Query:   180 RPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNP 239
                   G+ GL   G +   GA  D + L+Q+LQNPA++QMMQS+LSNPQYMNQ++ LNP
Sbjct:   342 GGL--GGLGGLGMLGADSPLGATPDASQLSQILQNPAMSQMMQSVLSNPQYMNQLMSLNP 399

Query:   240 QLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQ 283
             QLRSM+D N QLREM+QNP+FLRQ ++PE MQQM++LQQ L +Q
Sbjct:   400 QLRSMLDMNPQLREMMQNPDFLRQFSSPEMMQQMMSLQQSLFSQ 443

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q95M59 UBQLN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 118/303 (38%), Positives = 164/303 (54%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct:   186 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNP 245

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA+L+
Sbjct:   246 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQE-----QFGGNPFASLV 300

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDAR 180
                   +                      N +PLPNPW              +SS+G   
Sbjct:   301 SNTSSGEG--------------SQPSRTENRDPLPNPWAPQASQSSSASSGTTSSVGGTS 346

Query:   181 PQTPAGIAGLSS--PGFEDIFGA-MQDTNSLNQMLQNPAVT-QMMQSLLSNP--QYMNQI 234
                  G AG SS  P      GA M +T  +  +LQ      Q+MQ++LS P  + M Q 
Sbjct:   347 GSAAGGTAGQSSAAPNLGPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQS 406

Query:   235 LGLNPQLRS--MVDS-----NSQLREMI--QNPEFLRQLTNPETMQQMVT---LQQFLLT 282
             L  NP L +  M+++     N QL+E +  Q P FL+Q+ NP+T+  M     +Q  L  
Sbjct:   407 LSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQI 466

Query:   283 QLG 285
             Q G
Sbjct:   467 QQG 469

GO:0043234 "protein complex" evidence=IEA

GO:0031396 "regulation of protein ubiquitination" evidence=IEA

GO:0019900 "kinase binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

UNIPROTKB|Q9UMX0 UBQLN1 "Ubiquilin-1" [Homo sapiens (taxid:9606)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 116/303 (38%), Positives = 166/303 (54%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct:   186 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNP 245

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA+L+
Sbjct:   246 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQE-----QFGGNPFASLV 300

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDAR 180
                   +                      N +PLPNPW              +S++G   
Sbjct:   301 SNTSSGEG--------------SQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTT 346

Query:   181 PQTPAGIAGLSS--PGFEDIFGA-MQDTNSLNQMLQNPAVT-QMMQSLLSNP--QYMNQI 234
               T +G +G S+  P      GA M +T  +  +LQ      Q+MQ++LS P  + M Q 
Sbjct:   347 GSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQS 406

Query:   235 LGLNPQLRS--MVDS-----NSQLREMI--QNPEFLRQLTNPETMQQMVT---LQQFLLT 282
             L  NP L +  M+++     N QL+E +  Q P FL+Q+ NP+T+  M     +Q  L  
Sbjct:   407 LSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQI 466

Query:   283 QLG 285
             Q G
Sbjct:   467 QQG 469

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019900 "kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IMP;IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0031396 "regulation of protein ubiquitination" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

UNIPROTKB|H9L0E0 UBQLN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 110/303 (36%), Positives = 165/303 (54%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             + +IM  P+VQN+M+NP++MR +IM NPQM+++++RNPE++H+LN+P  +RQT+E ARNP
Sbjct:   157 LSQIMENPLVQNMMSNPDLMRQMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNP 216

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP  +A       GN   NPF++L 
Sbjct:   217 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAARE--QFGN---NPFSSLT 271

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDAR 180
             G    + ++                    N  PLPNPW                S G   
Sbjct:   272 GNSESSSSQPLRTE---------------NREPLPNPWSPSPPASQSQAPSSEGSTGSGS 316

Query:   181 PQTPAGIA---GLSSPGF-------EDIFGAMQDTNSLNQMLQN----PAVTQMMQSLLS 226
              Q+   ++   GL++  F        ++ G +Q  +   Q++QN    P +  MMQ+L  
Sbjct:   317 TQSTPTVSNPFGLNAASFGAGMFNSPEMQGLLQQISENPQLMQNMISAPYMRSMMQTLAQ 376

Query:   227 NPQYMNQIL------GLNPQLRSMVDSNSQL-REMIQNPEFLRQLTNPETMQQMVTLQQF 279
             NP +  QI+        NPQL+  +     +  + +QNP+ L  LTNP  MQ ++ +QQ 
Sbjct:   377 NPDFAAQIMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPDSLSILTNPRAMQALLQIQQG 436

Query:   280 LLT 282
             L T
Sbjct:   437 LQT 439

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031595 "nuclear proteasome complex" evidence=IEA

GO:0031597 "cytosolic proteasome complex" evidence=IEA

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|H9L0E1 UBQLN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 110/303 (36%), Positives = 165/303 (54%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             + +IM  P+VQN+M+NP++MR +IM NPQM+++++RNPE++H+LN+P  +RQT+E ARNP
Sbjct:   159 LSQIMENPLVQNMMSNPDLMRQMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNP 218

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP  +A       GN   NPF++L 
Sbjct:   219 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAARE--QFGN---NPFSSLT 273

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDAR 180
             G    + ++                    N  PLPNPW                S G   
Sbjct:   274 GNSESSSSQPLRTE---------------NREPLPNPWSPSPPASQSQAPSSEGSTGSGS 318

Query:   181 PQTPAGIA---GLSSPGF-------EDIFGAMQDTNSLNQMLQN----PAVTQMMQSLLS 226
              Q+   ++   GL++  F        ++ G +Q  +   Q++QN    P +  MMQ+L  
Sbjct:   319 TQSTPTVSNPFGLNAASFGAGMFNSPEMQGLLQQISENPQLMQNMISAPYMRSMMQTLAQ 378

Query:   227 NPQYMNQIL------GLNPQLRSMVDSNSQL-REMIQNPEFLRQLTNPETMQQMVTLQQF 279
             NP +  QI+        NPQL+  +     +  + +QNP+ L  LTNP  MQ ++ +QQ 
Sbjct:   379 NPDFAAQIMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPDSLSILTNPRAMQALLQIQQG 438

Query:   280 LLT 282
             L T
Sbjct:   439 LQT 441

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031595 "nuclear proteasome complex" evidence=IEA

GO:0031597 "cytosolic proteasome complex" evidence=IEA

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|I3LSM3 UBQLN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 115/303 (37%), Positives = 164/303 (54%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct:   186 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNP 245

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA+L+
Sbjct:   246 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQE-----QFGGNPFASLV 300

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDAR 180
                   +                      N +PLPNPW              +S++G   
Sbjct:   301 SNTSSGEG--------------SQPSRTENRDPLPNPWAPQASQSSSASSGTTSAVGGTS 346

Query:   181 PQTPAGIAGLSS--PGFEDIFGA-MQDTNSLNQMLQNPAVT-QMMQSLLSNP--QYMNQI 234
                 +G  G +S  P      GA M +T  +  +LQ      Q+MQ++LS P  + M Q 
Sbjct:   347 GSAASGTTGQNSTAPNLGPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQS 406

Query:   235 LGLNPQLRS--MVDS-----NSQLREMI--QNPEFLRQLTNPETMQQMVT---LQQFLLT 282
             L  NP L +  M+++     N QL+E +  Q P FL+Q+ NP+T+  M     +Q  L  
Sbjct:   407 LSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQI 466

Query:   283 QLG 285
             Q G
Sbjct:   467 QQG 469

GO:0043234 "protein complex" evidence=IEA

GO:0031396 "regulation of protein ubiquitination" evidence=IEA

GO:0019900 "kinase binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

MGI|MGI:1860283 Ubqln2 "ubiquilin 2" [Mus musculus (taxid:10090)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 112/305 (36%), Positives = 156/305 (51%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct:   193 MIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNP 252

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN D A+SN+ES P G+N LRRMY  +QEP LNA            NPFA   
Sbjct:   253 AMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQE-----QFGGNPFA--- 304

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPW------MXXXXXXXXXXXXRSS 174
              T G +                       N +PLPNPW                     S
Sbjct:   305 -TVGSSST----------SGEGTQPSRTENRDPLPNPWAPPPTTQTAATTTTTTTTSSGS 353

Query:   175 SLGDARPQTPAG--------IAGL-SSPGFEDIFGAMQDTNSLNQ-MLQNPAVTQMMQSL 224
               G +   T AG        +A + S+PG + +   + +   L Q ML  P +  MMQSL
Sbjct:   354 GSGSSSSSTTAGNTMAAANYVASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSL 413

Query:   225 LSNPQYMNQILGLNPQLRSMVDSNSQLR-------EMIQNPEFLRQLTNPETMQQMVTLQ 277
               NP    Q++  +P   S      Q+R       + +QNPE +  ++NP  MQ ++ +Q
Sbjct:   414 SQNPDMAAQMMLSSPLFTSNPQLQEQMRPQLPNFLQQMQNPETIAAMSNPRAMQALMQIQ 473

Query:   278 QFLLT 282
             Q L T
Sbjct:   474 QGLQT 478

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1860276 Ubqln1 "ubiquilin 1" [Mus musculus (taxid:10090)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 119/308 (38%), Positives = 163/308 (52%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct:   177 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNP 236

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP LNA            NPFA+L+
Sbjct:   237 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLNAAQE-----QFGGNPFASLV 291

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSL---- 176
              +    +                      N +PLPNPW               S+     
Sbjct:   292 SSSSSAEG--------------TQPSRTENRDPLPNPWAPQTSQSSPASGTTGSTTNTMS 337

Query:   177 --GDARPQTPAGIAGLSSPGFEDIFGA-MQDTNSLNQMLQNPAVT-QMMQSLLSNPQYMN 232
               G     TPAG    S P      GA M +T  +  +LQ      Q+MQ++LS P YM 
Sbjct:   338 TSGGTATSTPAG-QSTSGPSLVPGAGASMFNTPGMQSLLQQITENPQLMQNMLSAP-YMR 395

Query:   233 ---QILGLNPQLRS--MVDS-----NSQLREMI--QNPEFLRQLTNPETMQQMVT---LQ 277
                Q L  NP L +  M+++     N QL+E +  Q P FL+Q+ NP+T+  M     +Q
Sbjct:   396 SMLQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQ 455

Query:   278 QFLLTQLG 285
               L  Q G
Sbjct:   456 ALLQIQQG 463

GO:0000502 "proteasome complex" evidence=IEA

GO:0001666 "response to hypoxia" evidence=ISO

GO:0005102 "receptor binding" evidence=NAS

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0019215 "intermediate filament binding" evidence=NAS

GO:0019900 "kinase binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0031396 "regulation of protein ubiquitination" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|E2RTI3 UBQLN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 110/302 (36%), Positives = 157/302 (51%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct:   182 MIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNP 241

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN D A+SN+ES P G+N LRRMY  +QEP LNA            NPFA++ 
Sbjct:   242 AMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQE-----QFGGNPFASV- 295

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDAR 180
                 G+ +                     N +PLPNPW              +SS G   
Sbjct:   296 ----GSSS---------TSGEGTQPSRTENRDPLPNPWAPPPATQSSATTSTTSSSGSGS 342

Query:   181 PQTPAGIAG------------LSSPGFEDIFGAMQDTNSLNQ-MLQNPAVTQMMQSLLSN 227
               + +   G             S+PG + +   + +   L Q ML  P +  MMQSL  N
Sbjct:   343 GSSSSSATGNTVAAANYVASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQN 402

Query:   228 P----QYM--NQILGLNPQLRSMVDSN-SQLREMIQNPEFLRQLTNPETMQQMVTLQQFL 280
             P    Q M  + +   NPQL+  +        + +QNP+ L  ++NP  MQ ++ +QQ L
Sbjct:   403 PDLAAQMMLNSPVFTANPQLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQALMQIQQGL 462

Query:   281 LT 282
              T
Sbjct:   463 QT 464

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.V.3619.1	SubName- Full=Putative uncharacterized protein; (527 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.123.228.1	hypothetical protein (384 aa)						•		•	0.800
	fgenesh4_pm.C_LG_III000728	hypothetical protein (358 aa)						•		•	0.800
	estExt_fgenesh4_pm.C_LG_IV0203	hypothetical protein (385 aa)						•		•	0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
pfam13658	96	pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolas	1e-04
smart00727	41	smart00727, STI1, Heat shock chaperonin-binding mo	0.004

>gnl|CDD|222294 pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolase 37 receptor binding site

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 207 SLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTN 266
            L+ +L    +  +++S    PQ   ++L   P+   M  +   LREM+++P+F + L  
Sbjct: 2   DLSDVLTPENLEPLLES---PPQVQERLLPHLPEGDLM-RNPEDLREMLRSPQFKQAL-- 55

Query: 267 PETMQQMVTLQQF--LLTQLG 285
             ++ Q +       LL+QLG
Sbjct: 56  -ASLSQALRSGGLPSLLSQLG 75

This domain appears frequently at the C-terminus of Proteasom_Rpn13, pfam04683. It is a proteasome subunit that binds the de-ubiquitinating enzyme, UCH37. Length = 96

>gnl|CDD|128966 smart00727, STI1, Heat shock chaperonin-binding motif

 Score = 34.2 bits (79), Expect = 0.004
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 208 LNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLR 242
           +   LQNP V  ++Q +  NP  + Q+L  NPQL 
Sbjct: 4   MALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLL 38

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	100.0
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.14
smart00727	41	STI1 Heat shock chaperonin-binding motif.	97.57
smart00727	41	STI1 Heat shock chaperonin-binding motif.	97.09
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	96.32
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	96.22
PF09280	59	XPC-binding: XPC-binding domain; InterPro: IPR0153	95.36
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	91.71
PF09280	59	XPC-binding: XPC-binding domain; InterPro: IPR0153	89.66
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	87.18
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	86.38
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	85.34

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=100.00  E-value=6.5e-59  Score=464.57  Aligned_cols=302  Identities=42%  Similarity=0.666  Sum_probs=231.4

Q ss_pred             ChhhhCCHHHHHhhcCHHHHHHHHhcCHHHHHHHhhChhhhhccCChHHHHHHHHHhcCHHHHHHHHhhhhHHHhhccCC
Q 018937            1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESS   80 (348)
Q Consensus         1 ~~~mm~nP~~Q~lm~NPe~m~~~i~~nP~mq~l~~~nPel~~~ln~P~~lrq~me~~~NP~~~qEmmr~~dral~~le~~   80 (348)
                      +++||+||+||.||+|||+||++|++||+||++|++|||++|++++|+.+||++|++|||+++||+||++||+++++|+|
T Consensus       159 ~~~~m~nP~vq~ll~Npd~mrq~I~anPqmq~lm~~npei~h~ln~p~i~rQtle~arNP~m~qemmrn~d~a~Snlesi  238 (493)
T KOG0010|consen  159 LRQMMENPIVQSLLNNPDLMRQLIMANPQMQDLMQRNPEIGHLLNNPLILRQTLESARNPEMMQEMMRNQDRAMSNLESI  238 (493)
T ss_pred             HHHhhhChHHHHHhcChHHHHHHHhcCHHHHHHHhhCCcchhhhcChHHHHHHHHhccCHHHHHHHHhhccccccChhcC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccchhhHHhhhccchhhhhhhccCCCCCCCCCCchhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 018937           81 PEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMA  160 (348)
Q Consensus        81 PgG~n~lr~~~~diq~pm~na~~~~~~~~~~~~npf~~l~~~~~~~~~~~~~~~~~~~~s~~t~~~~~en~~PLPNPwa~  160 (348)
                      |||||++|++|+||+|||+|+...     .+++|||++|.+.++...              .+++++ ||++|+||||+.
T Consensus       239 PgG~n~l~~my~diqdPm~Na~~~-----~~g~Npfasl~~~~~s~~--------------~~~~~~-eN~~plPn~~~~  298 (493)
T KOG0010|consen  239 PGGYNALRRMYTDIQDPMLNAASE-----QFGGNPFASLPGNQGSGT--------------GGSPSP-ENNSPLPNPWAQ  298 (493)
T ss_pred             ccHHHHHHHHhhhccchhhhhccc-----ccCCCCcccccCccccCC--------------CCCCCc-ccCCCCCCcccC
Confidence            999999999999999999999885     389999999988777521              111234 999999999985


Q ss_pred             CCCCCCCCCcccCCCCCCCCCCC-CCCCCCCCCCCcccccCC-CCChHHHHhccCChHHHHHHHHhhCChHHHHHHhhCC
Q 018937          161 AGTGGAQTNTTRSSSLGDARPQT-PAGIAGLSSPGFEDIFGA-MQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLN  238 (348)
Q Consensus       161 ~g~~~~~~~~~~~~~~s~~~~~~-~~g~~g~g~~~~~~~~g~-~~~p~~m~~mm~nP~~~~mmq~l~sNP~lm~qmi~~n  238 (348)
                      +........... ..+++.+.+. ....+.++.++..+..+. ..++.++++|++ |+++++++.+.+||.++.+     
T Consensus       299 ~~~~s~~a~~~~-~~t~G~~s~~~~~n~s~~~~~~~~a~lq~i~~n~~~~~~l~s-~~~~~m~~~~s~~P~~a~~-----  371 (493)
T KOG0010|consen  299 ASTTSSPAANPT-PGTSGGTSSNGNSNPSQLGSPGMQAGLQMITENPSLLQQLLS-PYIRSMFQSASQNPLQAAQ-----  371 (493)
T ss_pred             CCCCCCCCCCCC-cCccCccccCCCCCccccCCcchhhhhhccccChhhhhhccc-hhhHHHHhhhccCchhhhc-----
Confidence            322111100000 0011100000 000001222222222332 478899999999 9999999999999998876     


Q ss_pred             hhHHHHhhhChHHHHhhcChHHHHhhcCHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCcc-hh-----
Q 018937          239 PQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQQPGQTGGGTGIGFIHPYCF-SL-----  312 (348)
Q Consensus       239 P~l~~m~~~nPql~~~mqnP~~l~~m~NP~~mqammqiqqgm~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-s~-----  312 (348)
                                  +|+ |+||+++++|+||++|++++||||++.+ +.++.+++..+..|..++ ....|..+ .+     
T Consensus       372 ------------~~~-mq~p~~~~~~~np~a~~ai~qiqq~~~~-~~~~a~~l~~~~s~~~~~-~n~~p~~~~~~~~~~~  436 (493)
T KOG0010|consen  372 ------------LRQ-MQNPDVLRAMSNPRAMQAIRQIQQGLQT-LAREAPGLVPGQSGASGP-INGSPTLLMQLFGSLM  436 (493)
T ss_pred             ------------ccc-ccCchHhhhhcChHHHHHHHHHHHHHHH-HHhhccccccccccccCC-CCCCchhhhhhhhhhh
Confidence                        235 7899999999999999999999999997 789999988865443222 11111111 00     


Q ss_pred             --------hh-hchHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937          313 --------FF-LLLELFFTTILKMLKPNGIPYRSFIASVEHLS  346 (348)
Q Consensus       313 --------~~-~~~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~  346 (348)
                              .. .-||++|++|||||++|||.|  +++||+||-
T Consensus       437 ~~~~~~~n~~~~~pe~r~q~QLeQL~~MGF~n--re~nlqAL~  477 (493)
T KOG0010|consen  437 LQGLRGSNQQTVPPEERYQTQLEQLNDMGFLD--REANLQALR  477 (493)
T ss_pred             hhhccccCcCCCCchHHHHHHHHHHHhcCCcc--HHHHHHHHH
Confidence                    01 128999999999999999999  889999873

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.14  E-value=2.3e-10  Score=116.25  Aligned_cols=80  Identities=39%  Similarity=0.678  Sum_probs=72.9

Q ss_pred             CCChHHHHhccCChHHHHHHHHhhCChHHHHHHhhCChhHHHHhhhChHHHHhhcChHHHHh----hcCHHHHHHHHHHH
Q 018937          202 MQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQ----LTNPETMQQMVTLQ  277 (348)
Q Consensus       202 ~~~p~~m~~mm~nP~~~~mmq~l~sNP~lm~qmi~~nP~l~~m~~~nPql~~~mqnP~~l~~----m~NP~~mqammqiq  277 (348)
                      ..+|+.+.+||+||.+    |.|++||+||+++|..||++++++++||+++|+++||+++|+    .+||+.+|++|+++
T Consensus       153 ~snpe~~~~~m~nP~v----q~ll~Npd~mrq~I~anPqmq~lm~~npei~h~ln~p~i~rQtle~arNP~m~qemmrn~  228 (493)
T KOG0010|consen  153 LSNPEALRQMMENPIV----QSLLNNPDLMRQLIMANPQMQDLMQRNPEIGHLLNNPLILRQTLESARNPEMMQEMMRNQ  228 (493)
T ss_pred             ccCHHHHHHhhhChHH----HHHhcChHHHHHHHhcCHHHHHHHhhCCcchhhhcChHHHHHHHHhccCHHHHHHHHhhc
Confidence            4799999999999975    677799999999999999999999999999999999999999    47999999999999


Q ss_pred             HHHHHhhc
Q 018937          278 QFLLTQLG  285 (348)
Q Consensus       278 qgm~~~l~  285 (348)
                      +...++++
T Consensus       229 d~a~Snle  236 (493)
T KOG0010|consen  229 DRAMSNLE  236 (493)
T ss_pred             cccccChh
Confidence            87666554

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=97.57  E-value=8.2e-05  Score=51.41  Aligned_cols=36  Identities=39%  Similarity=0.621  Sum_probs=31.6

Q ss_pred             HHhccCChHHHHHHHHhhCChHHHHHHhhCChhHHH
Q 018937          208 LNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRS  243 (348)
Q Consensus       208 m~~mm~nP~~~~mmq~l~sNP~lm~qmi~~nP~l~~  243 (348)
                      +.++++||+++++++.+++||++++.++.+||++++
T Consensus         4 ~~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~   39 (41)
T smart00727        4 MALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQ   39 (41)
T ss_pred             HHHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHh
Confidence            456778999999999999999999999977888764

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=97.09  E-value=0.00041  Score=47.87  Aligned_cols=32  Identities=28%  Similarity=0.629  Sum_probs=22.4

Q ss_pred             hhhhCCHHHHHhhc----CHHHHHHHHhcCHHHHHH
Q 018937            2 REIMNMPVVQNLMN----NPEIMRNLIMNNPQMREI   33 (348)
Q Consensus         2 ~~mm~nP~~Q~lm~----NPe~m~~~i~~nP~mq~l   33 (348)
                      .++++||.|+.+++    ||++++.++++||++++.
T Consensus         5 ~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~~   40 (41)
T smart00727        5 ALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQL   40 (41)
T ss_pred             HHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHhh
Confidence            46677787777665    787777777667776643

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=96.32  E-value=0.018  Score=58.22  Aligned_cols=21  Identities=19%  Similarity=0.022  Sum_probs=16.0

Q ss_pred             hHHHHHHHHHhhccCCCCCchhh
Q 018937          317 LELFFTTILKMLKPNGIPYRSFI  339 (348)
Q Consensus       317 ~e~~y~~qL~qL~~mGf~~~~~~  339 (348)
                      +|++  +-+++|+++||.-+..|
T Consensus       335 ~eE~--~AIeRL~~LGF~r~~vi  355 (378)
T TIGR00601       335 PEEK--EAIERLCALGFDRGLVI  355 (378)
T ss_pred             HHHH--HHHHHHHHcCCCHHHHH
Confidence            4554  67999999999766554

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=96.22  E-value=0.024  Score=56.05  Aligned_cols=62  Identities=18%  Similarity=0.133  Sum_probs=31.6

Q ss_pred             cCHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCcchhhhhchHHHHHHHHHhhccCCC
Q 018937          265 TNPETMQQMVTLQQFLLTQLGRAQSTQQPGQTGGGTGIGFIHPYCFSLFFLLLELFFTTILKMLKPNGI  333 (348)
Q Consensus       265 ~NP~~mqammqiqqgm~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~e~~y~~qL~qL~~mGf  333 (348)
                      .||+.+|.+.+-|..+...|+..+-+ +.+.+.+.....+..+    -...-||+.  +-+++||+|||
T Consensus       249 ~nP~L~q~Iq~nqe~Fl~mlnep~~~-~~~~~~~~~~~~~~~~----~I~vtpee~--eAIeRL~alGF  310 (340)
T KOG0011|consen  249 QNPQLLQLIQENQEAFLQLLNEPVEG-GDGGGTGAPAAEGPGH----QIQVTPEEK--EAIERLEALGF  310 (340)
T ss_pred             hCHHHHHHHHHHHHHHHHHhhccccc-ccccccccccccCCcc----eEecCHHHH--HHHHHHHHhCC
Confidence            46666777777777777766544443 1111111111111101    111125664  56899999999

>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array

Probab=95.36  E-value=0.029  Score=42.38  Aligned_cols=40  Identities=33%  Similarity=0.514  Sum_probs=23.8

Q ss_pred             hccCChHHHHHHHHhhCChHHHHHHh----hCChhHHHHhhhCh
Q 018937          210 QMLQNPAVTQMMQSLLSNPQYMNQIL----GLNPQLRSMVDSNS  249 (348)
Q Consensus       210 ~mm~nP~~~~mmq~l~sNP~lm~qmi----~~nP~l~~m~~~nP  249 (348)
                      .+.++|.+.++-+.+.+||+++..++    ..||++.+++.+||
T Consensus         3 ~Lr~~Pqf~~lR~~vq~NP~lL~~lLqql~~~nP~l~q~I~~n~   46 (59)
T PF09280_consen    3 FLRNNPQFQQLRQLVQQNPQLLPPLLQQLGQSNPQLLQLIQQNP   46 (59)
T ss_dssp             GGTTSHHHHHHHHHHHC-GGGHHHHHHHHHCCSHHHHHHHHHTH
T ss_pred             HHHcChHHHHHHHHHHHCHHHHHHHHHHHhccCHHHHHHHHHCH
Confidence            46778888888888888887554443    34444444433333

They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=91.71  E-value=0.27  Score=49.89  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=11.4

Q ss_pred             cCHHHHHHHHHHHHHHHHhhc
Q 018937          265 TNPETMQQMVTLQQFLLTQLG  285 (348)
Q Consensus       265 ~NP~~mqammqiqqgm~~~l~  285 (348)
                      +||+.+|.+.+-+..+...|+
T Consensus       281 ~nP~l~q~I~~n~e~Fl~ll~  301 (378)
T TIGR00601       281 ENPQLLQQISQHPEQFLQMLN  301 (378)
T ss_pred             hCHHHHHHHHHCHHHHHHHhc
Confidence            455555555555555555443

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array

Probab=89.66  E-value=0.73  Score=34.78  Aligned_cols=18  Identities=33%  Similarity=0.527  Sum_probs=9.6

Q ss_pred             hhhhCCHHHHHh----hcCHHH
Q 018937            2 REIMNMPVVQNL----MNNPEI   19 (348)
Q Consensus         2 ~~mm~nP~~Q~l----m~NPe~   19 (348)
                      ..+.++|.|+.|    -.||++
T Consensus         2 ~~Lr~~Pqf~~lR~~vq~NP~l   23 (59)
T PF09280_consen    2 EFLRNNPQFQQLRQLVQQNPQL   23 (59)
T ss_dssp             GGGTTSHHHHHHHHHHHC-GGG
T ss_pred             hHHHcChHHHHHHHHHHHCHHH
Confidence            456777766543    256543

They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=87.18  E-value=0.94  Score=45.08  Aligned_cols=51  Identities=33%  Similarity=0.562  Sum_probs=36.5

Q ss_pred             HHhccCChHHHHHHHHhhCChHHHHHHhhCChhHHHHhhhChHHHHhhc-ChH-HHHhh
Q 018937          208 LNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQ-NPE-FLRQL  264 (348)
Q Consensus       208 m~~mm~nP~~~~mmq~l~sNP~lm~qmi~~nP~l~~m~~~nPql~~~mq-nP~-~l~~m  264 (348)
                      +.-+.+.|.++++.+-+.+||++++-|+      +++-+.||++++.++ |++ |++++
T Consensus       216 l~fLr~~~qf~~lR~~iqqNP~ll~~~L------qqlg~~nP~L~q~Iq~nqe~Fl~ml  268 (340)
T KOG0011|consen  216 LEFLRNQPQFQQLRQMIQQNPELLHPLL------QQLGKQNPQLLQLIQENQEAFLQLL  268 (340)
T ss_pred             hhhhhccHHHHHHHHHHhhCHHHHHHHH------HHHhhhCHHHHHHHHHHHHHHHHHh
Confidence            4567889999999999999999986554      566667777776653 443 44444

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=86.38  E-value=0.16  Score=34.27  Aligned_cols=20  Identities=10%  Similarity=-0.039  Sum_probs=15.7

Q ss_pred             HHHHHHhhccCCCCCchhhh
Q 018937          321 FTTILKMLKPNGIPYRSFIA  340 (348)
Q Consensus       321 y~~qL~qL~~mGf~~~~~~~  340 (348)
                      |.+.|++|.+|||..++..+
T Consensus         2 ~~~~v~~L~~mGf~~~~~~~   21 (37)
T PF00627_consen    2 DEEKVQQLMEMGFSREQARE   21 (37)
T ss_dssp             HHHHHHHHHHHTS-HHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHH
Confidence            67899999999999865544

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>smart00165 UBA Ubiquitin associated domain

Probab=85.34  E-value=0.29  Score=32.57  Aligned_cols=23  Identities=9%  Similarity=0.073  Sum_probs=17.8

Q ss_pred             HHHHHHhhccCCCCCchhhhhcc
Q 018937          321 FTTILKMLKPNGIPYRSFIASVE  343 (348)
Q Consensus       321 y~~qL~qL~~mGf~~~~~~~~~~  343 (348)
                      |.+.+++|.+|||..++..+.++
T Consensus         1 ~~~~v~~L~~mGf~~~~a~~aL~   23 (37)
T smart00165        1 DEEKIDQLLEMGFSREEALKALR   23 (37)
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHH
Confidence            46789999999999876655443

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	6e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens} Length = 411

 Score = 65.2 bits (157), Expect = 6e-12
 Identities = 42/259 (16%), Positives = 82/259 (31%), Gaps = 6/259 (2%)

Query: 45  NDPSTLRQTLEAARNPELMREMMRNTDRA--MSNIESSPEGFNMLRRMYETVQEPFLNAT 102
            D    R+  E   NP +   +  +      +S +       ++L  M  +     +   
Sbjct: 120 QDEEHCRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPA 179

Query: 103 SMAGNAGND-NSNPFAALLGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAA 161
            + G  G    + P  A L    G      S++  + ++  T  S   +T   P P   A
Sbjct: 180 GLGGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPA 239

Query: 162 GTGGAQTNTTRSSSLGDARPQTPAGIAGLSS--PGFEDIFGAMQDTNSLNQMLQNPAVTQ 219
                  +   SS  G +   +P     LS        +             L +    +
Sbjct: 240 AASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPE 299

Query: 220 MMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQF 279
           +M  +L+N     ++L   P   S+  +  +++  + +P+F + L           L   
Sbjct: 300 IMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGP- 358

Query: 280 LLTQLGRAQSTQQPGQTGG 298
           L+ Q G      +    G 
Sbjct: 359 LMCQFGLPAEAVEAANKGD 377

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 9e-11
 Identities = 59/375 (15%), Positives = 118/375 (31%), Gaps = 95/375 (25%)

Query: 2   REIMNMPVVQNLMNNPEIMRNLIMNNPQ--MREIIDRNPELAHILNDPSTLRQT------ 53
           ++I+   V +        + N    + Q   + I+    E+ HI+     +  T      
Sbjct: 19  KDIL--SVFE-----DAFVDNFDCKDVQDMPKSIL-SKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 54  LEAARN---PELMREMMR-NTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAG 109
           L + +     + + E++R N    MS I++     +M+ RMY   ++             
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY---------- 120

Query: 110 NDNSNPFAALLGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPL----PNPWMAA-GTG 164
           NDN   FA        N +R     P     ++           L    P   +   G  
Sbjct: 121 NDNQ-VFAKY------NVSRL---QPYLKLRQA-----------LLELRPAKNVLIDGVL 159

Query: 165 GAQTNTTRSSSLGDARPQT--PAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQ 222
           G+             + Q      I  L+               ++ +MLQ   + Q+  
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLN-------LKNCNSPETVLEMLQK-LLYQIDP 211

Query: 223 SLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEF------LRQLTNPETM------ 270
           +  S   + +     N +LR +    ++LR ++++  +      L  + N +        
Sbjct: 212 NWTSRSDHSS-----NIKLR-IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 271 -QQMVTLQQFLLTQLGRAQSTQQPGQTGGGTGIGFIHPYCFSLFFLLLELFFTTILKMLK 329
            + ++T +   +T    A +T     +     +        SL       +     + L 
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHI--SLDHHSMTLTPDEVKSLL----LKYLDCRPQDLP 319

Query: 330 P---NGIPYR-SFIA 340
                  P R S IA
Sbjct: 320 REVLTTNPRRLSIIA 334

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 45/356 (12%), Positives = 100/356 (28%), Gaps = 106/356 (29%)

Query: 1   MREIMNMPVVQNLMNNP-EIMR-----NLIMNNPQ------MREIIDRN-----PELAHI 43
            + I++   + +++ +   +         +++  +      + E++  N       +   
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 44  LNDPSTLRQTLEAARNPELMREMMRNTDRAMS--NIESSPEGFNMLRR-MYETVQEPFLN 100
              PS + +     R+       + N ++  +  N+ S  + +  LR+ + E      + 
Sbjct: 102 QRQPSMMTRMYIEQRDR------LYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVL 154

Query: 101 ATSMAG---------------------------NAGNDNS-----NPFAALLG--TQGGN 126
              + G                           N  N NS          LL        
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 127 QAREGSNNPSTTTSESTTG-----SPAPNTNPL------PNPWMA-AGTGGAQT-NTTRS 173
              + S+N                   P  N L       N     A     +   TTR 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 174 SSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQ 233
             + D         A  +    +     +      + +L+   +    Q L   P+   +
Sbjct: 275 KQVTDF-----LSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDL---PR---E 321

Query: 234 ILGLNPQLRSMV----------------DSNSQLREMIQNPEFLRQLTNPETMQQM 273
           +L  NP+  S++                 +  +L  +I++   L  L  P   ++M
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVL-EPAEYRKM 374

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	98.22
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	98.05
2dna_A	67	Unnamed protein product; ubiquitin associated doma	97.66
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	97.51
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	97.27
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	97.22
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	97.02
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	97.01
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	96.68
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	96.44
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	95.71
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	95.59
2f4m_B	61	UV excision repair protein RAD23 homolog B; glycop	95.11
1pve_A	72	HHR23B, UV excision repair protein RAD23 homolog B	95.11
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	94.97
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	94.9
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	94.77
1pve_A	72	HHR23B, UV excision repair protein RAD23 homolog B	94.47
2f4m_B	61	UV excision repair protein RAD23 homolog B; glycop	94.08
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	92.08
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	90.81
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	87.35
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	82.63

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.05  E-value=3.9e-07  Score=66.37  Aligned_cols=29  Identities=10%  Similarity=-0.132  Sum_probs=26.2

Q ss_pred             chHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937          316 LLELFFTTILKMLKPNGIPYRSFIASVEHLS  346 (348)
Q Consensus       316 ~~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~  346 (348)
                      .||++|+.+|++|++|||+|  +++|+.+|.
T Consensus         4 ~~ee~~a~~L~~L~eMGF~D--~~~N~~aL~   32 (54)
T 2cp8_A            4 GSSGQTAALMAHLFEMGFCD--RQLNLRLLK   32 (54)
T ss_dssp             SSCTTHHHHHHHHHHHTCCC--HHHHHHHHT
T ss_pred             CHHHhhHHHHHHHHHcCCCc--HHHHHHHHH
Confidence            37999999999999999999  788888875

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.66  E-value=8.2e-06  Score=61.95  Aligned_cols=29  Identities=21%  Similarity=0.266  Sum_probs=24.0

Q ss_pred             chHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937          316 LLELFFTTILKMLKPNGIPYRSFIASVEHLS  346 (348)
Q Consensus       316 ~~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~  346 (348)
                      .||++|++||+||++|||.|++  +|+.||.
T Consensus        14 ~pe~~y~~ql~qL~~MGF~d~~--an~~AL~   42 (67)
T 2dna_A           14 APEVRFSKEMECLQAMGFVNYN--ANLQALI   42 (67)
T ss_dssp             CHHHHTHHHHHHHHHHTCCCHH--HHHHHHH
T ss_pred             ChHHHHHHHHHHHHHcCCCcHH--HHHHHHH
Confidence            3899999999999999999954  5666653

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=97.51  E-value=2.3e-05  Score=55.15  Aligned_cols=27  Identities=22%  Similarity=0.137  Sum_probs=22.7

Q ss_pred             hHHHHHHHHHhhccCCCCCchhhhhcccc
Q 018937          317 LELFFTTILKMLKPNGIPYRSFIASVEHL  345 (348)
Q Consensus       317 ~e~~y~~qL~qL~~mGf~~~~~~~~~~~~  345 (348)
                      ||++|.++|++|++|||.||+  +++.||
T Consensus         3 p~~~~~~~i~~L~~MGF~d~~--~~~~AL   29 (46)
T 2bwb_A            3 PEERYEHQLRQLNDMGFFDFD--RNVAAL   29 (46)
T ss_dssp             HHHHTHHHHHHHHHTTCCCHH--HHHHHH
T ss_pred             HhHHHHHHHHHHHHcCCCcHH--HHHHHH
Confidence            899999999999999999865  455554

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=97.27  E-value=4.6e-05  Score=56.22  Aligned_cols=29  Identities=21%  Similarity=0.079  Sum_probs=23.7

Q ss_pred             chHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937          316 LLELFFTTILKMLKPNGIPYRSFIASVEHLS  346 (348)
Q Consensus       316 ~~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~  346 (348)
                      .||++|.++|++|++|||.||+  +++.||.
T Consensus        12 ~pe~~~~~qi~~L~~MGF~d~~--~~~~AL~   40 (58)
T 1wr1_B           12 DPEERYEHQLRQLNDMGFFDFD--RNVAALR   40 (58)
T ss_dssp             SHHHHTHHHHHHHHHHTCCCHH--HHHHHHH
T ss_pred             ChHHHHHHHHHHHHHcCCCcHH--HHHHHHH
Confidence            3799999999999999999854  5555553

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.22  E-value=4.1e-05  Score=59.18  Aligned_cols=29  Identities=28%  Similarity=0.318  Sum_probs=23.8

Q ss_pred             chHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937          316 LLELFFTTILKMLKPNGIPYRSFIASVEHLS  346 (348)
Q Consensus       316 ~~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~  346 (348)
                      .||++|.++|++|++|||.||+  ++|.||.
T Consensus        24 ~pe~~ye~qi~qL~eMGF~dr~--~~~~AL~   52 (74)
T 1vej_A           24 FTEGRYQQELEELKALGFANRD--ANLQALV   52 (74)
T ss_dssp             GTTTTSHHHHHHHHHHTCCCHH--HHHHHHH
T ss_pred             CchHHHHHHHHHHHHcCCCcHH--HHHHHHH
Confidence            4899999999999999998854  5566653

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=97.02  E-value=0.00021  Score=51.47  Aligned_cols=28  Identities=29%  Similarity=0.400  Sum_probs=22.9

Q ss_pred             chHHHHHHHHHhhccCCCCCchhhhhcccc
Q 018937          316 LLELFFTTILKMLKPNGIPYRSFIASVEHL  345 (348)
Q Consensus       316 ~~e~~y~~qL~qL~~mGf~~~~~~~~~~~~  345 (348)
                      .||++|.++|++|++|||.||+  +++.||
T Consensus         6 ~pe~~~~~~l~~L~~MGF~~~~--~~~~AL   33 (53)
T 2knz_A            6 MPEVRFQQQLEQLNSMGFINRE--ANLQAL   33 (53)
T ss_dssp             CTHHHHHHHHHHHHTTTCCCHH--HHHHHH
T ss_pred             ChhhHHHHHHHHHHHcCCCCHH--HHHHHH
Confidence            3799999999999999998854  455554

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.01  E-value=4.2e-05  Score=55.58  Aligned_cols=28  Identities=25%  Similarity=0.297  Sum_probs=22.7

Q ss_pred             hHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937          317 LELFFTTILKMLKPNGIPYRSFIASVEHLS  346 (348)
Q Consensus       317 ~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~  346 (348)
                      ||++|.++|++|++|||.|++  +|+.||.
T Consensus         5 p~~~~~~~l~~L~~MGF~d~~--~n~~AL~   32 (54)
T 2dah_A            5 SSGHFQVQLEQLRSMGFLNRE--ANLQALI   32 (54)
T ss_dssp             CCCSSHHHHHHHHHHTCCCHH--HHHHHHH
T ss_pred             hhhhHHHHHHHHHHcCCCcHH--HHHHHHH
Confidence            678999999999999999954  5555553

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=96.68  E-value=0.00021  Score=51.32  Aligned_cols=29  Identities=28%  Similarity=0.293  Sum_probs=23.3

Q ss_pred             chHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937          316 LLELFFTTILKMLKPNGIPYRSFIASVEHLS  346 (348)
Q Consensus       316 ~~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~  346 (348)
                      .||+.|.++|++|++|||.||+  +++.||+
T Consensus         7 ~p~~~~~~~l~~L~~MGF~~~~--~~~~AL~   35 (52)
T 2jy5_A            7 NPEVRFQQQLEQLSAMGFLNRE--ANLQALI   35 (52)
T ss_dssp             STTTTTHHHHHHHHHTTCCCHH--HHHHHHH
T ss_pred             CchhHHHHHHHHHHHcCCCCHH--HHHHHHH
Confidence            3799999999999999998854  5555553

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=96.44  E-value=0.00034  Score=57.72  Aligned_cols=28  Identities=21%  Similarity=0.157  Sum_probs=22.7

Q ss_pred             hHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937          317 LELFFTTILKMLKPNGIPYRSFIASVEHLS  346 (348)
Q Consensus       317 ~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~  346 (348)
                      ||++|.+||++|+||||.||  +++|.||+
T Consensus        62 ~e~~~~~qL~qL~eMGF~d~--~~ni~AL~   89 (108)
T 2cwb_A           62 EGSQWQPQLQQLRDMGIQDD--ELSLRALQ   89 (108)
T ss_dssp             -CCTTHHHHHHHHTTTCCCH--HHHHHHHH
T ss_pred             cccchHHHHHHHHHcCCCCH--HHHHHHHH
Confidence            68899999999999999884  46666664

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=95.59  E-value=0.018  Score=42.48  Aligned_cols=32  Identities=22%  Similarity=0.425  Sum_probs=14.2

Q ss_pred             ChhhhhccCChHHHHHHHHHhcCHHHHHHHHh
Q 018937           37 NPELAHILNDPSTLRQTLEAARNPELMREMMR   68 (348)
Q Consensus        37 nPel~~~ln~P~~lrq~me~~~NP~~~qEmmr   68 (348)
                      +||+..+|+||+++..+-++.+||+.+++.+.
T Consensus        11 dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~   42 (62)
T 2lnm_A           11 NPDVAMAFQNPRVQAALMECSENPMNIMKYQN   42 (62)
T ss_dssp             SHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTT
T ss_pred             ChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHh
Confidence            44444444444444444444444444444443

>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*

Probab=95.11  E-value=0.02  Score=42.49  Aligned_cols=50  Identities=30%  Similarity=0.476  Sum_probs=31.4

Q ss_pred             HhccCChHHHHHHHHhhCChHHHHHHhhCChhHHHHhhhChHHHHhh-cChH-HHHhh
Q 018937          209 NQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMI-QNPE-FLRQL  264 (348)
Q Consensus       209 ~~mm~nP~~~~mmq~l~sNP~lm~qmi~~nP~l~~m~~~nPql~~~m-qnP~-~l~~m  264 (348)
                      .-+.++|.++++-+.+.+||+++..++      +++-+.||++.+++ +||+ |++++
T Consensus         5 ~~Lr~~Pqf~~lR~~vq~NP~~L~~lL------qql~~~nP~l~~~I~~n~e~Fl~ll   56 (61)
T 2f4m_B            5 EFLRNQPQFQQMRQIIQQNPSLLPALL------QQIGRENPQLLQQISQHQEHFIQML   56 (61)
T ss_dssp             GGGTTCHHHHHHHHHHHHCGGGHHHHH------HHHHHHCHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHHHCHHHHHHHH------HHHHhHCHHHHHHHHHCHHHHHHHH
Confidence            456778888888888888888776655      33445555555544 3554 55544

>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1

Probab=95.11  E-value=0.01  Score=45.46  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=12.5

Q ss_pred             hccCChHHHHHHHHhhCChHHHHHH
Q 018937          210 QMLQNPAVTQMMQSLLSNPQYMNQI  234 (348)
Q Consensus       210 ~mm~nP~~~~mmq~l~sNP~lm~qm  234 (348)
                      -+.++|.++++-+.+.+||+++..+
T Consensus         8 ~Lr~~Pqf~qlR~~vqqNP~lL~~l   32 (72)
T 1pve_A            8 FLRNQPQFQQMRQIIQQNPSLLPAL   32 (72)
T ss_dssp             GGTTCTTTTTHHHHHTTCGGGHHHH
T ss_pred             HHHcChHHHHHHHHHHHCHHHHHHH
Confidence            3445555555555555555554433

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=94.97  E-value=0.04  Score=54.17  Aligned_cols=72  Identities=22%  Similarity=0.272  Sum_probs=38.1

Q ss_pred             cCHHHHHHHHHHHHHHHHhhcccCCCCCCCC-CCCCCC-CCCCCCCcchhhhhc-hHHHHHHHHHhhccCCCCCchhhh
Q 018937          265 TNPETMQQMVTLQQFLLTQLGRAQSTQQPGQ-TGGGTG-IGFIHPYCFSLFFLL-LELFFTTILKMLKPNGIPYRSFIA  340 (348)
Q Consensus       265 ~NP~~mqammqiqqgm~~~l~~~~~~~~~~~-~~~~~g-~~~~~~~~~s~~~~~-~e~~y~~qL~qL~~mGf~~~~~~~  340 (348)
                      +||+.++.+.+-+..+...|+..+.+-+.+. .++..| .....+.. ... .+ +|+.  +-+++|.+|||.-+..+.
T Consensus       270 ~nP~l~~~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~i-~~t~ee~--eaI~rL~~mGF~~~~a~~  344 (368)
T 1oqy_A          270 ENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM-NYI-QVTPQEK--EAIERLKALGFPESLVIQ  344 (368)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTC-SSC-CCCTTTH--HHHHHHHHHTCCSHHHHH
T ss_pred             hCHHHHHHHHHCHHHHHHHHcCcccccccccccccccccccccCCcc-ccc-cCCCcCH--HHHHHHHHcCCCHHHHHH
Confidence            6999999889999998887754322111111 111111 11111110 000 12 3332  568999999999766654

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=94.90  E-value=0.024  Score=41.80  Aligned_cols=41  Identities=27%  Similarity=0.454  Sum_probs=24.1

Q ss_pred             hhhhCCHHHHHhhcCHHHHHHHHhcCHHHHHHHhhChh-hhhccCChHHH
Q 018937            2 REIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPE-LAHILNDPSTL   50 (348)
Q Consensus         2 ~~mm~nP~~Q~lm~NPe~m~~~i~~nP~mq~l~~~nPe-l~~~ln~P~~l   50 (348)
                      ..+++||.++.+|+||+++.-+- .       +.+||. +.++++||+.+
T Consensus         6 ~kl~~dPe~~~~m~dP~~~~~lq-~-------i~~NP~~~~~~~~dP~v~   47 (62)
T 2lnm_A            6 SKIMENPDVAMAFQNPRVQAALM-E-------CSENPMNIMKYQNDKEVM   47 (62)
T ss_dssp             HHHTTSHHHHHHTTSHHHHHHHH-H-------HTTCGGGHHHHTTCHHHH
T ss_pred             HHHHcChHHHHHcCCHHHHHHHH-H-------HHHCHHHHHHHHhChHHH
Confidence            45677888888888887665432 1       334554 44455555543

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=94.77  E-value=0.025  Score=43.12  Aligned_cols=36  Identities=19%  Similarity=0.461  Sum_probs=20.5

Q ss_pred             HHhccCChHHHHHHHHhhCChHHHHHHhhCChhHHHH
Q 018937          208 LNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSM  244 (348)
Q Consensus       208 m~~mm~nP~~~~mmq~l~sNP~lm~qmi~~nP~l~~m  244 (348)
                      +..+|+||.|+++++.+++||+.+...+ +||.++.+
T Consensus        22 i~~im~DP~~~~~lq~~~~NP~~~~k~~-~nP~v~~~   57 (71)
T 2llw_A           22 VAAIMQDPVMQSILQQAQQNPAALQEHM-KNPEVFKK   57 (71)
T ss_dssp             HHHHHTCTHHHHHHHHHHHCHHHHHHHH-HSHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHCHHHHHHHH-hCHHHHHH
Confidence            3445566666666666666666665554 25555443

>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1

Probab=94.47  E-value=0.046  Score=41.86  Aligned_cols=41  Identities=27%  Similarity=0.493  Sum_probs=26.8

Q ss_pred             HHHHhhhChHHHHhhcChHHHHh--hcCHHHHHHHHHHHHHHHHhhcc
Q 018937          241 LRSMVDSNSQLREMIQNPEFLRQ--LTNPETMQQMVTLQQFLLTQLGR  286 (348)
Q Consensus       241 l~~m~~~nPql~~~mqnP~~l~~--m~NP~~mqammqiqqgm~~~l~~  286 (348)
                      +|+++++||++.+     .++.+  -+||+.++.+.+-++.+...++.
T Consensus        18 lR~~vqqNP~lL~-----~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e   60 (72)
T 1pve_A           18 MRQIIQQNPSLLP-----ALLQQIGRENPQLLQQISQHQEHFIQMLNE   60 (72)
T ss_dssp             HHHHHTTCGGGHH-----HHHHHHHTTCHHHHHHHHTTHHHHHHHHHS
T ss_pred             HHHHHHHCHHHHH-----HHHHHHHhHCHHHHHHHHHCHHHHHHHHcC
Confidence            4555566666653     34444  36888888888888888776643

>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*

Probab=94.08  E-value=0.046  Score=40.51  Aligned_cols=38  Identities=29%  Similarity=0.544  Sum_probs=24.7

Q ss_pred             HHHhhhChHHHHhhcChHHHHhh--cCHHHHHHHHHHHHHHHHhh
Q 018937          242 RSMVDSNSQLREMIQNPEFLRQL--TNPETMQQMVTLQQFLLTQL  284 (348)
Q Consensus       242 ~~m~~~nPql~~~mqnP~~l~~m--~NP~~mqammqiqqgm~~~l  284 (348)
                      |+++++||++.+     .++.++  +||+.++.+.+-++.+...+
T Consensus        17 R~~vq~NP~~L~-----~lLqql~~~nP~l~~~I~~n~e~Fl~ll   56 (61)
T 2f4m_B           17 RQIIQQNPSLLP-----ALLQQIGRENPQLLQQISQHQEHFIQML   56 (61)
T ss_dssp             HHHHHHCGGGHH-----HHHHHHHHHCHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHCHHHHH-----HHHHHHHhHCHHHHHHHHHCHHHHHHHH
Confidence            445556666653     344443  68888888888888777655

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=92.08  E-value=0.15  Score=38.68  Aligned_cols=34  Identities=35%  Similarity=0.603  Sum_probs=17.6

Q ss_pred             ChhhhhccCChHHHHHHHHHhcCHHHHHHHHhhh
Q 018937           37 NPELAHILNDPSTLRQTLEAARNPELMREMMRNT   70 (348)
Q Consensus        37 nPel~~~ln~P~~lrq~me~~~NP~~~qEmmr~~   70 (348)
                      .||+..+|+||+.+.-+-++.+||+.+++.+.+.
T Consensus        19 dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP   52 (71)
T 2llw_A           19 DPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNP   52 (71)
T ss_dssp             SHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSH
T ss_pred             CHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCH
Confidence            4444455555554444444555665555555544

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=90.81  E-value=0.028  Score=42.57  Aligned_cols=44  Identities=18%  Similarity=0.544  Sum_probs=34.1

Q ss_pred             CHHHHHHHhhChhhhhccCChHHHHHHHHHhcCHHHHHH-HHhhh
Q 018937           27 NPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMRE-MMRNT   70 (348)
Q Consensus        27 nP~mq~l~~~nPel~~~ln~P~~lrq~me~~~NP~~~qE-mmr~~   70 (348)
                      .|.+-+.+..||+++.++.||+++..+-++.+||..+++ .+.+.
T Consensus        12 ~p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dP   56 (71)
T 2llv_A           12 DPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDP   56 (71)
T ss_dssp             SSSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCH
T ss_pred             ChHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCc
Confidence            455544567788999999999988888888899988887 76544

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=87.35  E-value=0.24  Score=48.65  Aligned_cols=27  Identities=22%  Similarity=0.422  Sum_probs=19.0

Q ss_pred             HhccCChHHHHHHHHhhCChHHHHHHh
Q 018937          209 NQMLQNPAVTQMMQSLLSNPQYMNQIL  235 (348)
Q Consensus       209 ~~mm~nP~~~~mmq~l~sNP~lm~qmi  235 (348)
                      .-+-++|.|+++-+.+.+||++++.+|
T Consensus       238 ~~Lr~~pqf~~lR~~vq~nP~~l~~~l  264 (368)
T 1oqy_A          238 EFLRDQPQFQNMRQVIQQNPALLPALL  264 (368)
T ss_dssp             HHHHHSHHHHHHHHSTTTCTTHHHHHH
T ss_pred             HHHhcChHHHHHHHHHHhChHHHHHHH
Confidence            344567777777777778888776665

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=82.63  E-value=0.5  Score=35.60  Aligned_cols=17  Identities=24%  Similarity=0.751  Sum_probs=8.3

Q ss_pred             hhChh-hhh-ccCChHHHH
Q 018937           35 DRNPE-LAH-ILNDPSTLR   51 (348)
Q Consensus        35 ~~nPe-l~~-~ln~P~~lr   51 (348)
                      .+||. ++. .++||+.+.
T Consensus        42 ~~NP~~i~~~~~~dPrv~~   60 (71)
T 2llv_A           42 KQNPQAIGQDLFTDPRLMT   60 (71)
T ss_dssp             HHSCTTHHHHTTTCHHHHH
T ss_pred             HHCHHHHHHHHhhCcHHHH
Confidence            34543 344 556665444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.64
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	98.49
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	98.29
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	97.82
d2f4mb1	58	XPC-binding domain of Rad23 homolog B (Hhr23b) {Hu	95.15
d2f4mb1	58	XPC-binding domain of Rad23 homolog B (Hhr23b) {Hu	89.7

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=2.6e-09  Score=73.11  Aligned_cols=28  Identities=25%  Similarity=0.199  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937          317 LELFFTTILKMLKPNGIPYRSFIASVEHLS  346 (348)
Q Consensus       317 ~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~  346 (348)
                      ||++|++||+||++|||.|  .++||+||.
T Consensus         1 pe~ry~~QL~qL~~MGF~d--~~~Ni~AL~   28 (44)
T d2bwba1           1 PEERYEHQLRQLNDMGFFD--FDRNVAALR   28 (44)
T ss_dssp             HHHHTHHHHHHHHHTTCCC--HHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCCc--HHHHHHHHH
Confidence            7999999999999999999  778888874

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=9.4e-09  Score=72.04  Aligned_cols=28  Identities=21%  Similarity=0.328  Sum_probs=25.7

Q ss_pred             hHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937          317 LELFFTTILKMLKPNGIPYRSFIASVEHLS  346 (348)
Q Consensus       317 ~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~  346 (348)
                      ||++|++||+||++|||.|  .++||+||.
T Consensus         4 pe~ry~~QL~qL~~MGF~d--~~~Ni~AL~   31 (50)
T d2dnaa1           4 PEVRFSKEMECLQAMGFVN--YNANLQALI   31 (50)
T ss_dssp             HHHHTHHHHHHHHHHTCCC--HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCC--HHHHHHHHH
Confidence            8999999999999999999  778888874

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=3.6e-08  Score=71.76  Aligned_cols=31  Identities=26%  Similarity=0.179  Sum_probs=26.8

Q ss_pred             hhchHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937          314 FLLLELFFTTILKMLKPNGIPYRSFIASVEHLS  346 (348)
Q Consensus       314 ~~~~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~  346 (348)
                      +..+|++|++||+||++|||.|  .++||+||.
T Consensus        15 ~~~~e~ry~~QL~qL~eMGF~d--~~~Nl~AL~   45 (61)
T d1veja1          15 SLFTEGRYQQELEELKALGFAN--RDANLQALV   45 (61)
T ss_dssp             GGGTTTTSHHHHHHHHHHTCCC--HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCC--HHHHHHHHH
Confidence            3457999999999999999999  677888874

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.1e-06  Score=58.99  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=21.2

Q ss_pred             HHHHHHhhccCCCCCchhhhhccccc
Q 018937          321 FTTILKMLKPNGIPYRSFIASVEHLS  346 (348)
Q Consensus       321 y~~qL~qL~~mGf~~~~~~~~~~~~~  346 (348)
                      |++||++|++|||.|  .++||.||.
T Consensus         2 y~~QL~~L~~MGF~d--~~~Ni~AL~   25 (41)
T d2daha1           2 FQVQLEQLRSMGFLN--REANLQALI   25 (41)
T ss_dssp             SHHHHHHHHHHTCCC--HHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCC--HHHHHHHHH
Confidence            899999999999999  667887764

>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: XPC-binding domain
superfamily: XPC-binding domain
family: XPC-binding domain
domain: XPC-binding domain of Rad23 homolog B (Hhr23b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0091  Score=42.17  Aligned_cols=26  Identities=27%  Similarity=0.445  Sum_probs=17.2

Q ss_pred             hccCChHHHHHHHHhhCChHHHHHHh
Q 018937          210 QMLQNPAVTQMMQSLLSNPQYMNQIL  235 (348)
Q Consensus       210 ~mm~nP~~~~mmq~l~sNP~lm~qmi  235 (348)
                      -+-++|.++++-+.+.+||+++..++
T Consensus         4 ~Lr~~PqFq~lR~~vq~nP~~L~~lL   29 (58)
T d2f4mb1           4 FLRNQPQFQQMRQIIQQNPSLLPALL   29 (58)
T ss_dssp             GGTTCHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHhcChHHHHHHHHHHHCHHHHHHHH
Confidence            35567777777777777777665444

>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: XPC-binding domain
superfamily: XPC-binding domain
family: XPC-binding domain
domain: XPC-binding domain of Rad23 homolog B (Hhr23b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.70  E-value=0.1  Score=36.61  Aligned_cols=37  Identities=30%  Similarity=0.544  Sum_probs=20.8

Q ss_pred             HHhhhChHHHHhhcChHHHHh--hcCHHHHHHHHHHHHHHHHhh
Q 018937          243 SMVDSNSQLREMIQNPEFLRQ--LTNPETMQQMVTLQQFLLTQL  284 (348)
Q Consensus       243 ~m~~~nPql~~~mqnP~~l~~--m~NP~~mqammqiqqgm~~~l  284 (348)
                      +++++||++.     |.++.+  -+||+.++.+-+-+..+...+
T Consensus        16 ~~vq~nP~~L-----~~lLqql~~~NP~L~q~I~~nqe~Fl~ll   54 (58)
T d2f4mb1          16 QIIQQNPSLL-----PALLQQIGRENPQLLQQISQHQEHFIQML   54 (58)
T ss_dssp             HHHHHCGGGH-----HHHHHHHHHHCHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHCHHHH-----HHHHHHHHhhCHHHHHHHHHCHHHHHHHH
Confidence            3444455544     234444  357777777777777666544