Citrus Sinensis ID: 018940

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMLLE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccEEEcccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccccEEEEEHEEHHEHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEc
Coil and Loop (DISEMBL)
mtsstvmnydienddsftqpvgRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFghfkiwhgAGSVLVAVSFSSvfggcmpcrilststlkvETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVStakthadleNQYRWIAYSSIFIGCCFVgiflsrteeprlkmglrgnshARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMLLE
Flexible Loop (DISEMBL)
mtsstvmnydienddsftqpvGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMLLE
Low Complexity Region (SEG)
MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHgagsvlvavsfssvfggCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMLLE
Disordered region (IsUnstruct)
**************DSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFML**
Disordered Region (DISOPRED)
************************SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRT******************WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMLLE
Disordered Region (DISEMBL)
MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMLLE
Disordered Region (DISPRO)
**********IENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE************ARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMLLE
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMLLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q3U481	476	Major facilitator superfa	yes	no	0.887	0.649	0.324	7e-40
Q6NUT3	480	Major facilitator superfa	yes	no	0.890	0.645	0.311	2e-39
P94488	463	Uncharacterized symporter	yes	no	0.574	0.431	0.263	7e-06
P74168	544	Uncharacterized symporter	N/A	no	0.410	0.262	0.290	0.0005

>sp|Q3U481|MFS12_MOUSE Major facilitator superfamily domain-containing protein 12 OS=Mus musculus GN=Mfsd12 PE=2 SV=1

 Score =  164 bits (416), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 175/342 (51%), Gaps = 33/342 (9%)

Query: 12  ENDDSFTQPVGRWSV---LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLS 67
            +DD+   P    S+   L +  GH LND+ A  WFTYLLLFL  + G S RGA  ++L 
Sbjct: 4   PSDDAGPGPPRTLSLAARLSFAVGHFLNDLCAGMWFTYLLLFLHSVRGYSSRGAGLLLLL 63

Query: 68  GQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122
           GQ+ADG  T  +G   DR      G  K WH AG+V V +SF  +F  C+ C     +  
Sbjct: 64  GQVADGLCTPLVGYEADRASCVRCGPRKAWHLAGTVCVLLSFPFIFSPCLGCG--EATPE 121

Query: 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182
               + Y  F  +F  GWAATQ+AH+S++  +  +   +V LT+ R AFT+VAN+++Y  
Sbjct: 122 WAALLYYGPFIVVFQFGWAATQIAHLSLIPELVTSDHEKVELTALRYAFTVVANITVYGA 181

Query: 183 AFIVFSVS-TAKTHADLE--NQ--------YRWIAYSSIFIGCCFVGIFLSRTEEPRLKM 231
           A+++  +  +A    D+   +Q        +R +A   + +G  F  +F   T+E     
Sbjct: 182 AWLLLHLQGSAHGEQDISVGDQLGVQDVPVFRNLALLVVGVGAIFSLLFHLGTKEGHRSQ 241

Query: 232 --GLRGNSHARIS---------WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND 280
             G   N H  +          W +W ++  +YQV ++YM TRL+VN+SQ Y+A Y+   
Sbjct: 242 HWGNEPNEHTPLVAPAAQPLLLWKHWLREPAFYQVGMLYMTTRLIVNLSQTYIAMYLTYS 301

Query: 281 LRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSA 322
           L + +   A +P ++Y+  F  S L++ +     R   Y++ 
Sbjct: 302 LSLPKKFIATIPLVMYLSGFFSSFLMKPVNRRIGRNMTYFTG 343

Mus musculus (taxid: 10090)

>sp|Q6NUT3|MFS12_HUMAN Major facilitator superfamily domain-containing protein 12 OS=Homo sapiens GN=MFSD12 PE=2 SV=2

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 175/343 (51%), Gaps = 33/343 (9%)

Query: 18  TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFAT 76
            +P+   + L Y  GH LND+ A+ WFTYLLL+L  +   S RGA  ++L GQ+ADG  T
Sbjct: 14  PRPLSLVARLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCT 73

Query: 77  IFIGELIDR-------FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISY 129
             +G   DR       +G  K WH  G+V V +SF  +F  C+ C   + +      + Y
Sbjct: 74  PLVGYEADRAASCCARYGPRKAWHLVGTVCVLLSFPFIFSPCLGCG--AATPEWAALLYY 131

Query: 130 CVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189
             F  IF  GWA+TQ++H+S++  +  N   +V LT+ R AFT+VAN+++Y  A+++  +
Sbjct: 132 GPFIVIFQFGWASTQISHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLLLHL 191

Query: 190 ---STAKTHADLE--NQ--------YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN 236
              S  +   D+   +Q        +R ++   + +G  F  +F   T E R        
Sbjct: 192 QGSSRVEPTQDISISDQLGGQDVPVFRNLSLLVVGVGAVFSLLFHLGTRERRRPHAEEPG 251

Query: 237 SHARIS----------WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS 286
            H  +           W +W ++  +YQV ++YM TRL+VN+SQ Y+A Y+   L + + 
Sbjct: 252 EHTPLLAPATAQPLLLWKHWLREPAFYQVGILYMTTRLIVNLSQTYMAMYLTYSLHLPKK 311

Query: 287 AKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVF 329
             A +P ++Y+  F+ S L++ +     R   Y+S   V+  F
Sbjct: 312 FIATIPLVMYLSGFLSSFLMKPINKCIGRNMTYFSGLLVILAF 354

Homo sapiens (taxid: 9606)

>sp|P94488|YNAJ_BACSU Uncharacterized symporter YnaJ OS=Bacillus subtilis (strain 168) GN=ynaJ PE=3 SV=2

 Score = 52.0 bits (123), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 35/235 (14%)

Query: 29  YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
           Y SG    ++  A   TYLL F TD+ GLS   A  + L  +I D  A  FIG ++D   
Sbjct: 17  YASGDFACNLIYATVSTYLLFFYTDVFGLSAAAAGTMFLVVRIIDALADPFIGTIVDRTN 76

Query: 85  -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST---STLKVETISYCVFAAIFNVGW 140
            RFG F+ +              +  G  P  IL+    +T     +   ++A I  VG 
Sbjct: 77  SRFGRFRPY--------------LLFGAFPFVILAILCFTTPDFSDMGKLIYAYITYVGL 122

Query: 141 AAT----QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196
           + T     V + ++ + +T N+   V +TS R  F   ANL    +AF V  ++   +  
Sbjct: 123 SLTYTTINVPYGALTSAMTRNNQEVVSITSVRMLF---ANLGGLVVAFFVPLLAAYLSDT 179

Query: 197 DLENQYRWIAYSSIF--IGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKK 249
                  W     I   IG C + IF  ++ + R+ +     S  +I +   F++
Sbjct: 180 SGNESLGWQLTMGILGMIGGCLL-IFCFKSTKERVTL---QKSEEKIKFTDIFEQ 230

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P74168|Y1374_SYNY3 Uncharacterized symporter sll1374 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1374 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 12/155 (7%)

Query: 27  LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID- 84
           L YG+G     ITA     YLL FLTD+ G+    A +V++ G+I D      IG L D 
Sbjct: 16  LAYGAGDFGPAITANILVFYLLFFLTDVAGIPAALAGSVLMIGKIFDAINDPIIGLLSDR 75

Query: 85  ---RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE---TISYCVFAAIFNV 138
              R+G    W   G +  A+ +++ +   +P    S   L  +    I Y   A  FN+
Sbjct: 76  TRSRWGRRLPWMLGGMIPFALFYTAQW--LIPH--FSDDRLTNQWGLFIYYVAIAMAFNL 131

Query: 139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM 173
            +    + + ++   +T N   R  L S R AF++
Sbjct: 132 CYTTVNLPYTALTPELTQNYNERTRLNSFRFAFSI 166

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
255542273	454	conserved hypothetical protein [Ricinus	0.974	0.746	0.793	1e-160
224106589	442	predicted protein [Populus trichocarpa]	0.974	0.766	0.787	1e-159
356557090	452	PREDICTED: uncharacterized MFS-type tran	0.974	0.75	0.775	1e-157
224120942	457	predicted protein [Populus trichocarpa]	0.974	0.741	0.774	1e-156
356525698	452	PREDICTED: uncharacterized MFS-type tran	0.974	0.75	0.766	1e-154
255646539	452	unknown [Glycine max]	0.974	0.75	0.764	1e-154
359487445	453	PREDICTED: uncharacterized MFS-type tran	0.962	0.739	0.764	1e-153
357451101	453	MFS-type transporter, putative [Medicago	0.968	0.743	0.756	1e-152
297820866	459	AT3g60070/T2O9_50 [Arabidopsis lyrata su	0.959	0.727	0.742	1e-150
145331127	462	major facilitator protein [Arabidopsis t	0.991	0.746	0.715	1e-150

>gi|255542273|ref|XP_002512200.1| conserved hypothetical protein [Ricinus communis] gi|223548744|gb|EEF50234.1| conserved hypothetical protein [Ricinus communis]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 269/339 (79%), Positives = 303/339 (89%)

Query: 7   MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
           M  DIE+D+S+ +PVGRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1   MGDDIEDDNSYPKPVGRWPVFYYGVGHMLNDITAACWFTYLLLFLTDIGLSPRDAATVML 60

Query: 67  SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
           SGQIADGFATIF GELIDRFGHFK+WHGAGSVLVA+SFSSVFGGC PC+IL T++  +ET
Sbjct: 61  SGQIADGFATIFAGELIDRFGHFKVWHGAGSVLVAISFSSVFGGCFPCKILGTNSSTIET 120

Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
           +SY +FAAIFNVGWAATQV+HMSMVNCI+LNSTSRVV+ SCRNAFTMVANLSLYAIA  +
Sbjct: 121 VSYSIFAAIFNVGWAATQVSHMSMVNCISLNSTSRVVMASCRNAFTMVANLSLYAIALTI 180

Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
           F+VS A+THAD++NQYRWIAY SI  GCCFVGIF   T+EPRLK+ L   S ARISW YW
Sbjct: 181 FNVSKAETHADIQNQYRWIAYLSICFGCCFVGIFHLGTKEPRLKISLHEISCARISWTYW 240

Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           FKKILYYQV LVY+LTRLV NVSQAYLAFYVINDLRM QSAKALVPAIIYI SF++S+++
Sbjct: 241 FKKILYYQVGLVYVLTRLVQNVSQAYLAFYVINDLRMAQSAKALVPAIIYISSFVISVIM 300

Query: 307 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 345
           QE++WTGQRLKAYYSAGG+LW+FCGA IL+LP +MSAFM
Sbjct: 301 QEISWTGQRLKAYYSAGGILWMFCGASILLLPRSMSAFM 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106589|ref|XP_002314218.1| predicted protein [Populus trichocarpa] gi|222850626|gb|EEE88173.1| predicted protein [Populus trichocarpa]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/339 (78%), Positives = 301/339 (88%)

Query: 7   MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
           M  D+E+DDS  +PVGR SV YYG GHMLNDITAACWFTYLLLFLT+IGLSPR AA VML
Sbjct: 1   MVNDVEDDDSCPKPVGRSSVFYYGVGHMLNDITAACWFTYLLLFLTEIGLSPRDAAIVML 60

Query: 67  SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
           +GQIADGFAT+F GELIDRFGHFKIWHGAGS+L A+SFSSVFGGC+PC+IL++S+  +ET
Sbjct: 61  AGQIADGFATVFAGELIDRFGHFKIWHGAGSILAAISFSSVFGGCLPCKILASSSPIIET 120

Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
           ISY   AAIFNVGWAATQV+HMSMVNCI+LNSTSRVV+TSCRNAFTMVANLSLYA+A +V
Sbjct: 121 ISYSTSAAIFNVGWAATQVSHMSMVNCISLNSTSRVVMTSCRNAFTMVANLSLYAVALVV 180

Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
           FS + A TH+D+ENQY WIAY+SIFIGCCFVGIF   T+EPRLK+ + G S+ARISWAYW
Sbjct: 181 FSTTKATTHSDIENQYHWIAYTSIFIGCCFVGIFHLGTKEPRLKIRVHGTSYARISWAYW 240

Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           FKK+LYYQV LVYMLTRL  NVSQAYLAFYVI D+RM +SAKALVPAIIYI SFIVSI++
Sbjct: 241 FKKVLYYQVGLVYMLTRLAQNVSQAYLAFYVIEDMRMAKSAKALVPAIIYISSFIVSIIM 300

Query: 307 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 345
           QEM WTGQRLKAYY AGGVLWVFCGA IL LP ++SAFM
Sbjct: 301 QEMYWTGQRLKAYYCAGGVLWVFCGASILFLPRSLSAFM 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557090|ref|XP_003546851.1| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Glycine max]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 263/339 (77%), Positives = 301/339 (88%)

Query: 7   MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
           M   +E DD++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AAAVML
Sbjct: 1   MGTIVEADDTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAAVML 60

Query: 67  SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
           SGQ+ADGFATI +GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++   ET
Sbjct: 61  SGQVADGFATILVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSCTFET 120

Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
           +SY VFAAIFN+GWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 VSYSVFAAIFNLGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180

Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
           FSV   KTH D+ENQYRWIAY SIFIGCCFVG+FL  T+EPRLK+G+ G  HARISW YW
Sbjct: 181 FSVINGKTHDDVENQYRWIAYFSIFIGCCFVGVFLLATKEPRLKLGVHGMVHARISWDYW 240

Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           FK+ILYYQVALVY+LTRLV+N+SQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNISQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300

Query: 307 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 345
           QE+AWTG+ LKAYYSAG +LW+FCGA IL+L  NMS  M
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVM 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120942|ref|XP_002330864.1| predicted protein [Populus trichocarpa] gi|222872686|gb|EEF09817.1| predicted protein [Populus trichocarpa]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/342 (77%), Positives = 303/342 (88%), Gaps = 3/342 (0%)

Query: 7   MNYDIENDD---SFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAA 63
           M  D+ENDD   S+ +PVGR  V YYG GHMLNDITAACWFTYLLLFLT+IGLSPR AA 
Sbjct: 1   MRNDVENDDDDDSYPKPVGRRCVFYYGVGHMLNDITAACWFTYLLLFLTEIGLSPRDAAI 60

Query: 64  VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK 123
            ML+GQIADGFAT+F GELIDRFGHFK+WHGAGS+LVA+SFSSVFGGC+PC+IL++ +  
Sbjct: 61  AMLAGQIADGFATVFAGELIDRFGHFKVWHGAGSILVAISFSSVFGGCLPCKILASCSSV 120

Query: 124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183
           VET+SY   AAIFNVGWAATQV+HMSMVNCI+LNS+SRVV+TSCRNAFTMVANLSLYA+A
Sbjct: 121 VETVSYSTSAAIFNVGWAATQVSHMSMVNCISLNSSSRVVMTSCRNAFTMVANLSLYAVA 180

Query: 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISW 243
            +VFS   A THAD+ENQYRWIAY+SIFIGCCFVGIF   T+EPRLK+ + G S+ARISW
Sbjct: 181 LVVFSSIKATTHADIENQYRWIAYTSIFIGCCFVGIFHLGTKEPRLKICVHGTSNARISW 240

Query: 244 AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVS 303
           AYWFKK+LYYQV LVYMLTRLV NVSQ YLAFYV++DL+M +SAKALVPAIIY+ SF VS
Sbjct: 241 AYWFKKVLYYQVGLVYMLTRLVQNVSQVYLAFYVMDDLQMAKSAKALVPAIIYMSSFFVS 300

Query: 304 ILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 345
           +++QEM+WTGQRLKAYYSAGG+LWVFCGAGIL LP NMSAFM
Sbjct: 301 VIMQEMSWTGQRLKAYYSAGGILWVFCGAGILFLPRNMSAFM 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525698|ref|XP_003531460.1| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Glycine max]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 260/339 (76%), Positives = 299/339 (88%)

Query: 7   MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
           M   +E D+++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1   MGTIVEADNTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAVVML 60

Query: 67  SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
           SGQ+ADGF TIF+GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++   ET
Sbjct: 61  SGQVADGFVTIFVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSGTFET 120

Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
           +SY ++AAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 LSYSMYAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180

Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
           FSV   KTH D+ENQYRWIAY SIFIGCCFVG+F   T+EPRLK+G+ G  HARISW YW
Sbjct: 181 FSVINGKTHDDVENQYRWIAYLSIFIGCCFVGVFHLATKEPRLKVGVHGMVHARISWDYW 240

Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           FK+ILYYQVALVY+LTRLV+NVSQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNVSQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300

Query: 307 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 345
           QE+AWTG+ LKAYYSAG +LW+FCGA IL+L  NMS  M
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVM 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646539|gb|ACU23744.1| unknown [Glycine max]

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 259/339 (76%), Positives = 298/339 (87%)

Query: 7   MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
           M   +E D+++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1   MGTIVEADNTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAVVML 60

Query: 67  SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
           SGQ+ADGF TIF+GELI RFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++   ET
Sbjct: 61  SGQVADGFVTIFVGELIGRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSGTFET 120

Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
           +SY ++AAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 LSYSMYAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180

Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
           FSV   KTH D+ENQYRWIAY SIFIGCCFVG+F   T+EPRLK+G+ G  HARISW YW
Sbjct: 181 FSVIIGKTHDDVENQYRWIAYLSIFIGCCFVGVFRLATKEPRLKVGVHGMVHARISWGYW 240

Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           FK+ILYYQVALVY+LTRLV+NVSQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNVSQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300

Query: 307 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 345
           QE+AWTG+ LKAYYSAG +LW+FCGA IL+L  NMS  M
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVM 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487445|ref|XP_002270525.2| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Vitis vinifera] gi|297741204|emb|CBI32155.3| unnamed protein product [Vitis vinifera]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 256/335 (76%), Positives = 295/335 (88%)

Query: 11  IENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQI 70
           +E+DD+FT+P+GR +V YYG GHMLNDIT+ACWFTYLL+FLTDIGL  R AA VMLSGQI
Sbjct: 5   MEDDDAFTKPLGRQAVFYYGVGHMLNDITSACWFTYLLVFLTDIGLPSRDAATVMLSGQI 64

Query: 71  ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYC 130
           ADGF TIF GELIDRFGHFKIWHGAGS+LVAVSFSSVFGGC+PC+I  +++  ++T+ Y 
Sbjct: 65  ADGFTTIFAGELIDRFGHFKIWHGAGSILVAVSFSSVFGGCLPCKIFGSNSSTLQTVGYS 124

Query: 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190
           +FAAIFNVGWAATQV+HMSMVNCITLNSTSRVVL SCRNAFTMVANLSLYA+AF+VF+ S
Sbjct: 125 MFAAIFNVGWAATQVSHMSMVNCITLNSTSRVVLASCRNAFTMVANLSLYAVAFVVFNSS 184

Query: 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKI 250
              T  D+ENQYRWIAY SI IGCCFV IFL  T+EPRLK G  G  +ARI W++WF+K+
Sbjct: 185 KPHTLVDIENQYRWIAYLSIAIGCCFVAIFLLGTKEPRLKKGAHGKGYARILWSHWFRKV 244

Query: 251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMA 310
           LYYQVALVY+LTRLV NVSQA+LAFYVINDL+M QS+KALVPAIIYICSFIVSI+LQE  
Sbjct: 245 LYYQVALVYVLTRLVTNVSQAFLAFYVINDLQMSQSSKALVPAIIYICSFIVSIILQEFT 304

Query: 311 WTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 345
           W+GQRLKA+YSAGG+LW+ CGAGIL LP NM+AFM
Sbjct: 305 WSGQRLKAFYSAGGILWIICGAGILFLPRNMNAFM 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451101|ref|XP_003595827.1| MFS-type transporter, putative [Medicago truncatula] gi|124360106|gb|ABN08122.1| C19orf28 protein, related [Medicago truncatula] gi|355484875|gb|AES66078.1| MFS-type transporter, putative [Medicago truncatula]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 255/337 (75%), Positives = 296/337 (87%)

Query: 6   VMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVM 65
           +M   IE DD+FT+ +GR  + YYG GHMLNDIT+ACWFTYLLLFLTDIG SPR AA VM
Sbjct: 1   MMGTVIEEDDTFTKALGRGPIFYYGMGHMLNDITSACWFTYLLLFLTDIGFSPRNAAIVM 60

Query: 66  LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE 125
           LSGQ+AD FAT+F+GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC I ++ ++  E
Sbjct: 61  LSGQVADAFATVFVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCTIFTSDSITFE 120

Query: 126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185
           T+SY VFAAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYAIA I
Sbjct: 121 TVSYSVFAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAIALI 180

Query: 186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAY 245
           VFSV   KT+A++ENQYRWIAY SIFIGCCFVGIFL  T+EPRL+M + G +  RISWAY
Sbjct: 181 VFSVVNGKTYANVENQYRWIAYVSIFIGCCFVGIFLLATKEPRLQMDVHGKARGRISWAY 240

Query: 246 WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSIL 305
           WFK++LYYQVAL+Y+LTRL+VN+SQAYLAFYVINDL+M QSAKALVPAIIYI SFIVSI 
Sbjct: 241 WFKRVLYYQVALIYVLTRLIVNISQAYLAFYVINDLQMAQSAKALVPAIIYISSFIVSIA 300

Query: 306 LQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMS 342
           LQE+AWTG+ LKAY+SAG +LW+FCGA I++L  +MS
Sbjct: 301 LQEIAWTGKLLKAYFSAGSILWIFCGAVIMLLTDHMS 337

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820866|ref|XP_002878316.1| AT3g60070/T2O9_50 [Arabidopsis lyrata subsp. lyrata] gi|297324154|gb|EFH54575.1| AT3g60070/T2O9_50 [Arabidopsis lyrata subsp. lyrata]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 248/334 (74%), Positives = 290/334 (86%)

Query: 12  ENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIA 71
             +D FT+P+GRWSV +YG GHMLNDITA+CWFTYLLLFLT IGLSPR AA VMLSGQ+A
Sbjct: 5   SEEDPFTKPIGRWSVFFYGVGHMLNDITASCWFTYLLLFLTQIGLSPRDAAIVMLSGQVA 64

Query: 72  DGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCV 131
           D FATIF GELIDRFGHFKIWH AGS+LVA+SFSSVFGGC+PC IL   +L +ET SY +
Sbjct: 65  DAFATIFTGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSILHNDSLTLETFSYSM 124

Query: 132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191
           FAAIFN+GWAATQV+HM+MVNCI+LNSTSRV LTS RNAFTMVANL LYAIA +VF V  
Sbjct: 125 FAAIFNIGWAATQVSHMAMVNCISLNSTSRVALTSSRNAFTMVANLGLYAIALVVFGVIK 184

Query: 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL 251
           A +  D E QYRWIAYSSI IGCCFV IFL  T+EPRL++ L+  S ARI W YWF+K+L
Sbjct: 185 AGSKEDTETQYRWIAYSSITIGCCFVVIFLMGTKEPRLRIDLKQTSRARIPWVYWFRKLL 244

Query: 252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAW 311
           YYQVA+VY+LTRLV+NVSQAYLAF+VI+DL+MGQSAKALVPAIIYICSF+VS+LLQE+ W
Sbjct: 245 YYQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMGQSAKALVPAIIYICSFVVSVLLQEIPW 304

Query: 312 TGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 345
            G+RLKAYY+AGG++W+FCGA IL+LP ++S+FM
Sbjct: 305 NGRRLKAYYTAGGIIWIFCGAAILLLPRDISSFM 338

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145331127|ref|NP_001078055.1| major facilitator protein [Arabidopsis thaliana] gi|145360981|ref|NP_181957.2| major facilitator protein [Arabidopsis thaliana] gi|22135824|gb|AAM91098.1| AT3g60070/T2O9_50 [Arabidopsis thaliana] gi|27363300|gb|AAO11569.1| At3g60070/T2O9_50 [Arabidopsis thaliana] gi|330255307|gb|AEC10401.1| major facilitator protein [Arabidopsis thaliana] gi|330255308|gb|AEC10402.1| major facilitator protein [Arabidopsis thaliana]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 247/345 (71%), Positives = 299/345 (86%)

Query: 1   MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG 60
           MTSS ++  + E +D  T+P+GR SV YYG GHMLNDITA+CWFTYLLLFLT IGLSPR 
Sbjct: 1   MTSSVIVGMEEEEEDPSTKPLGRLSVFYYGVGHMLNDITASCWFTYLLLFLTQIGLSPRD 60

Query: 61  AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120
           AA VMLSGQ+ADGFATIFIGELIDRFGHFKIWH AGS+LVA+SFSSVFGGC+PC +L  +
Sbjct: 61  AAIVMLSGQVADGFATIFIGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSLLHNN 120

Query: 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180
           +  +ET+SY +FAAIFN+GWAATQV+HM+MVNCITLNSTSRV LTS RNAF+MVANL LY
Sbjct: 121 SSTIETLSYSMFAAIFNIGWAATQVSHMAMVNCITLNSTSRVALTSSRNAFSMVANLGLY 180

Query: 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR 240
           AIA +VF VS A T  + E+QYRWIAYSSI +GCCFV IFL  T+EPRL++ LR  S AR
Sbjct: 181 AIALVVFGVSEAVTKENTESQYRWIAYSSITVGCCFVVIFLMGTKEPRLRINLRETSRAR 240

Query: 241 ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF 300
           I W+YWF+KILYYQVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKAL+PAIIY+CSF
Sbjct: 241 IPWSYWFRKILYYQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMAQSAKALIPAIIYVCSF 300

Query: 301 IVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 345
           +VS++LQE+ W G+RLKAYY AGG++W+FCG  IL+LP +++++M
Sbjct: 301 VVSVMLQEIPWNGKRLKAYYCAGGIIWIFCGISILLLPRSINSYM 345

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2050626	462	AT2G44280 "AT2G44280" [Arabido	0.991	0.746	0.675	1.7e-130
TAIR|locus:2101442	458	AT3G60070 "AT3G60070" [Arabido	0.954	0.724	0.704	1.2e-129
UNIPROTKB|Q6NUT3	480	MFSD12 "Major facilitator supe	0.477	0.345	0.346	8.5e-38
MGI|MGI:3604804	476	Mfsd12 "major facilitator supe	0.482	0.352	0.350	1.3e-37
ZFIN|ZDB-GENE-030131-4642	507	mfsd12a "major facilitator sup	0.568	0.390	0.331	1.7e-35
WB|WBGene00017530	501	F16H11.1 [Caenorhabditis elega	0.715	0.497	0.296	7.3e-26

TAIR|locus:2050626 AT2G44280 "AT2G44280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
 Identities = 233/345 (67%), Positives = 283/345 (82%)

Query:     1 MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG 60
             MTSS ++  + E +D  T+P+GR SV YYG GHMLNDITA+CWFTYLLLFLT IGLSPR 
Sbjct:     1 MTSSVIVGMEEEEEDPSTKPLGRLSVFYYGVGHMLNDITASCWFTYLLLFLTQIGLSPRD 60

Query:    61 AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTS 120
             AA VMLSGQ+ADGFATIFIGELIDRFGHFKIWH                 C+PC +L  +
Sbjct:    61 AAIVMLSGQVADGFATIFIGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSLLHNN 120

Query:   121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180
             +  +ET+SY +FAAIFN+GWAATQV+HM+MVNCITLNSTSRV LTS RNAF+MVANL LY
Sbjct:   121 SSTIETLSYSMFAAIFNIGWAATQVSHMAMVNCITLNSTSRVALTSSRNAFSMVANLGLY 180

Query:   181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR 240
             AIA +VF VS A T  + E+QYRWIAYSSI +GCCFV IFL  T+EPRL++ LR  S AR
Sbjct:   181 AIALVVFGVSEAVTKENTESQYRWIAYSSITVGCCFVVIFLMGTKEPRLRINLRETSRAR 240

Query:   241 ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF 300
             I W+YWF+KILYYQVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKAL+PAIIY+CSF
Sbjct:   241 IPWSYWFRKILYYQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMAQSAKALIPAIIYVCSF 300

Query:   301 IVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 345
             +VS++LQE+ W G+RLKAYY AGG++W+FCG  IL+LP +++++M
Sbjct:   301 VVSVMLQEIPWNGKRLKAYYCAGGIIWIFCGISILLLPRSINSYM 345

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101442 AT3G60070 "AT3G60070" [Arabidopsis thaliana (taxid:3702)]

 Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
 Identities = 234/332 (70%), Positives = 273/332 (82%)

Query:    14 DDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADG 73
             +D FT+P+GRWSV +YG GHMLNDITA+CWFTYLLLFLT IGLSPR AA VMLSGQ+AD 
Sbjct:     7 EDPFTKPIGRWSVFFYGVGHMLNDITASCWFTYLLLFLTQIGLSPRDAAIVMLSGQVADA 66

Query:    74 FATIFIGELIDRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFA 133
             FATIF GELIDRFGHFKIWH                 C+PC IL   +L +ET SY +FA
Sbjct:    67 FATIFTGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSILHNDSLTLETFSYSMFA 126

Query:   134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193
             AIFN+GWAATQV+HM+MVNCI+LNSTSRV LTS RNAFTMVANL LYAIA +VF V  A 
Sbjct:   127 AIFNIGWAATQVSHMAMVNCISLNSTSRVALTSSRNAFTMVANLGLYAIALVVFGVIKAG 186

Query:   194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYY 253
             +  D E QYRWIAYSSI IGCCFV IFL  T+EPRL++ L+  S ARI W YWF+KILYY
Sbjct:   187 SKEDTETQYRWIAYSSITIGCCFVVIFLMGTKEPRLRIDLKETSRARIPWVYWFRKILYY 246

Query:   254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTG 313
             QVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKALVPAIIYICSF+VS+LLQE+ W G
Sbjct:   247 QVAMVYLLTRLVLNVSQAYLAFFVIDDLQMDQSAKALVPAIIYICSFVVSVLLQEIPWNG 306

Query:   314 QRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 345
             +RLKAYY+AGG++W+FCGA IL+LP ++S+FM
Sbjct:   307 KRLKAYYTAGGIIWIFCGAAILLLPRDISSFM 338

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q6NUT3 MFSD12 "Major facilitator superfamily domain-containing protein 12" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 8.5e-38, Sum P(2) = 8.5e-38
 Identities = 61/176 (34%), Positives = 93/176 (52%)

Query:    19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATI 77
             +P+   + L Y  GH LND+ A+ WFTYLLL+L  +   S RGA  ++L GQ+ADG  T 
Sbjct:    15 RPLSLVARLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCTP 74

Query:    78 FIGELIDR-------FGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYC 130
              +G   DR       +G  K WH                 C+ C   +     +  + Y 
Sbjct:    75 LVGYEADRAASCCARYGPRKAWHLVGTVCVLLSFPFIFSPCLGCGAATPEWAAL--LYYG 132

Query:   131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
              F  IF  GWA+TQ++H+S++  +  N   +V LT+ R AFT+VAN+++Y  A+++
Sbjct:   133 PFIVIFQFGWASTQISHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLL 188

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:3604804 Mfsd12 "major facilitator superfamily domain containing 12" [Mus musculus (taxid:10090)]

 Score = 275 (101.9 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
 Identities = 62/177 (35%), Positives = 91/177 (51%)

Query:    27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85
             L +  GH LND+ A  WFTYLLLFL  + G S RGA  ++L GQ+ADG  T  +G   DR
Sbjct:    22 LSFAVGHFLNDLCAGMWFTYLLLFLHSVRGYSSRGAGLLLLLGQVADGLCTPLVGYEADR 81

Query:    86 F-----GHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVGW 140
                   G  K WH                 C+ C   +     +  + Y  F  +F  GW
Sbjct:    82 ASCVRCGPRKAWHLAGTVCVLLSFPFIFSPCLGCGEATPEWAAL--LYYGPFIVVFQFGW 139

Query:   141 AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197
             AATQ+AH+S++  +  +   +V LT+ R AFT+VAN+++Y  A+++  +     H +
Sbjct:   140 AATQIAHLSLIPELVTSDHEKVELTALRYAFTVVANITVYGAAWLLLHLQ-GSAHGE 195

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-4642 mfsd12a "major facilitator superfamily domain containing 12a" [Danio rerio (taxid:7955)]

 Score = 274 (101.5 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
 Identities = 71/214 (33%), Positives = 105/214 (49%)

Query:    27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85
             L Y  GH LND+ A+ WFTYLL+F   + G     A  ++L GQIADG  T  IG   DR
Sbjct:    15 LSYSVGHFLNDLCASMWFTYLLVFYHSVLGFENTYAGVLLLVGQIADGVCTPLIGYESDR 74

Query:    86 ------FGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVG 139
                   +G  K WH                 C+ C  L+T    V    +  F  IF  G
Sbjct:    75 TPGCGSYGKRKTWHLVGTISVLLSFPFIFNQCLGCD-LNTPQW-VSVTYFAPFIIIFQFG 132

Query:   140 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199
             WAATQ++H+S++  +      +V LT+ R AFT++AN+++YA+A+++F        A ++
Sbjct:   133 WAATQISHLSLIPELVSCEHEKVELTAYRYAFTVIANITVYAVAWLLFHFQEGDDPAVMD 192

Query:   200 NQ-------YRWIAYSSIFIGCCFVGIFLSRTEE 226
             N        +R ++   + IG  F  +F   T E
Sbjct:   193 NLGSVDIPVFRNLSLIVVGIGAVFTFLFHLGTRE 226

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00017530 F16H11.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 297 (109.6 bits), Expect = 7.3e-26, P = 7.3e-26
 Identities = 80/270 (29%), Positives = 132/270 (48%)

Query:    84 DRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
             D+ G    WH                 C  C+  ++  LKV  + +  F  +F  GWA+ 
Sbjct:   105 DKIGRRMSWHLIGTVLVSLSFPMIFNKCFLCKSTTSEWLKV--LWFVPFIMVFQFGWASV 162

Query:   144 QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY-AIAFIVFSVSTAKTHA---DLE 199
             Q++H++++  ++    SR  + S R AFT++ANLS+Y A+A+++ S ST  T     D  
Sbjct:   163 QISHLALIPELSSVPASRATMNSLRYAFTVIANLSVYFALAWLL-SESTGHTSIGPWDFS 221

Query:   200 NQYRWIAYSSIFIGCCFVGIFLSRTEEP-RLKMGLRGNSHA-------RISWAYWFKKIL 251
             + +R   +  + +G     +F + T EP   +   R NS +       R+ W  WF  + 
Sbjct:   222 H-FRLAGWLVVVLGITVAFVFYAFTREPTNYRRFSRLNSFSSDASELVRMHWTSWFGHVQ 280

Query:   252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAW 311
             +YQ+AL+YML+RL +N+SQ Y  FY+       +   A++P + Y+ SF VS++      
Sbjct:   281 FYQIALLYMLSRLYINISQVYFPFYITMTQNYEKKYVAILPMVAYLSSFSVSMVNSLPVV 340

Query:   312 TGQRLKAYYSAG---GVLWVFCGAGILILP 338
             +    K  YS G   G+L   C   +L LP
Sbjct:   341 SKLSKKILYSFGLASGML--SCAVMMLDLP 368

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IX001320 hypothetical protein (442 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	3e-39
COG2211	467	COG2211, MelB, Na+/melibiose symporter and related	4e-14
PRK09848	448	PRK09848, PRK09848, glucuronide transporter; Provi	1e-07
TIGR00792	437	TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuron	2e-07

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score =  143 bits (363), Expect = 3e-39
 Identities = 70/329 (21%), Positives = 120/329 (36%), Gaps = 21/329 (6%)

Query: 27  LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID- 84
           + YG G + N+I  A   TYLL F TD+ GLS      + L  +I D F    +G +ID 
Sbjct: 2   IGYGLGDLGNNIIYALLSTYLLYFYTDVLGLSAAAVGTIFLVARIWDAFTDPIVGAIIDR 61

Query: 85  ---RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWA 141
              R+G F+ W   G++ +A+S   +F    P  +  T+ L    I+Y     +  + + 
Sbjct: 62  TRTRWGKFRPWLLIGAIPLAISLVLLFA--TPFGLSMTAKLIYAFITYI----LLGLAYT 115

Query: 142 ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201
              + + S++  +T +   R  L S R     +  L +  IA  + ++       +    
Sbjct: 116 FVNIPYWSLIPVLTRDPKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGG---NGAKG 172

Query: 202 YRWIAYSSIFIGCCFVGIFLSRT-EEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYM 260
           Y   A     +      I  + T E   +    +     R  +   FK      + L+Y+
Sbjct: 173 YFLAALIIAILAVVGFLICFAGTKERVSVPPEQKEKVSLRDMFKALFKNRPLLILLLLYL 232

Query: 261 LTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KA 318
           L  L + V    L +Y    L        L+            +      W  +R   K 
Sbjct: 233 LNALAMAVRNGLLLYYFTYVLGNAGLFSVLLLIGTIAAILGAPL----WPWLAKRFGKKR 288

Query: 319 YYSAGGVLWVFCGAGILILPMNMSAFMLL 347
            +  G +L       +  LP       L+
Sbjct: 289 TFLLGMLLAAIGLVLLFFLPPGSLWLFLV 317

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 61/330 (18%), Positives = 119/330 (36%), Gaps = 25/330 (7%)

Query: 29  YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
           YG G   ++        YLL F TD+ GLS   A  + L  +I D      +G ++D   
Sbjct: 17  YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTR 76

Query: 85  -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
            R+G F+ W   G++  A+    +F       I    ++  + I   V   +  +G+   
Sbjct: 77  SRWGRFRPWLLWGAIPFAIVAVLLF-------ITPDFSMTGKLIYALVTYMLLGLGYTLV 129

Query: 144 QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 203
            + + ++   IT +   R  LTS R  F  +  L L A+ F             L   Y+
Sbjct: 130 NIPYGALGPEITQDPQERASLTSWRMVFASLGGL-LVAVLFPPLVKLFGGGDKAL--GYQ 186

Query: 204 WIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL----YYQVALVY 259
             A     IG   +       +E  ++      +  ++     F  I        + L+ 
Sbjct: 187 GTALVLGVIGVILLLFCFFNVKERVVETQ-PTKTGVKLKLKDSFLLIFKNRPLLLLLLMN 245

Query: 260 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--K 317
           +L  +  N+  + + +YV   L   +    L+  +      ++ ++L       ++   K
Sbjct: 246 LLLFIAFNIRGSIMVYYVTYVLGDPELFAYLL-LLASGAGLLIGLIL--WPRLVKKFGKK 302

Query: 318 AYYSAGGVLWVFCGAGILILPMNMSAFMLL 347
             +  G +L       +   P      +++
Sbjct: 303 KLFLIGLLLLAVGYLLLYFTPAGSVVLIVV 332

Length = 467

>gnl|CDD|182109 PRK09848, PRK09848, glucuronide transporter; Provisional

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 55/281 (19%), Positives = 112/281 (39%), Gaps = 35/281 (12%)

Query: 19  QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATI 77
           Q +   +++ Y  G + N+   A    +LL + TD+ G+    A  ++L  ++ D FA +
Sbjct: 3   QQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADV 62

Query: 78  FIGELID----RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA 133
           F G ++D    R+G F+ +   G+  + +    VF   +P     +S +    ++Y    
Sbjct: 63  FAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVF--WVPTDWSHSSKVVYAYLTY---- 116

Query: 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193
               + ++   + + S+   +T    SR  L + R    + A+L+   +AF++       
Sbjct: 117 MGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAAR---GIAASLTFVCLAFLIGPSIKNS 173

Query: 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEE--------PRLKMG---LRGNSHARIS 242
           +  ++ + Y +        G     I    T E        P LK+    L+ N      
Sbjct: 174 SPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQTLKRNR----- 228

Query: 243 WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM 283
                   +    AL  +++   V+ S  +   YV+ND  +
Sbjct: 229 -----PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGL 264

Length = 448

>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 74/335 (22%), Positives = 124/335 (37%), Gaps = 37/335 (11%)

Query: 29  YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
           YG G   N+   A   TYLL F TD+ GLS      + L  +I D      +G ++D   
Sbjct: 4   YGFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTR 63

Query: 85  -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
            R+G F+ W     +L+     S+        +L  +T         V+A I  +     
Sbjct: 64  TRWGKFRPW-----LLIGAIPFSIVL------VLLFTTPDFSATGKLVYAYITYILLGLF 112

Query: 144 ----QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199
                + + S+V  ITL+   R  L++ R      A L    +A IV  + +     D +
Sbjct: 113 YSFVNIPYWSLVPAITLDPRERESLSTFRRFG---ATLGGLLVAVIVLPLVSYFGGGDDK 169

Query: 200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL----YYQV 255
             +   A     IG   + I    T+E   ++    N   ++S    FK +        +
Sbjct: 170 FGWFMFALVLALIGVVSLIICFFGTKERYSEI--PKNIEKKLSLKQIFKALFKNDQLLIL 227

Query: 256 ALVYMLTRLVVNV---SQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWT 312
            L Y+   L  N+    Q Y   YV+ D  +     + + +I      I  +L   +   
Sbjct: 228 CLAYLFYNLAFNIKNGVQVYYFTYVLGDPEL----FSYMGSIAIGAGLIGVLLFPRLVKK 283

Query: 313 GQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMLL 347
             R K  ++ G +L V           N+   ++L
Sbjct: 284 FGR-KILFAGGILLMVLGYLIFFFAGSNLPLILVL 317

The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 437

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
COG2211	467	MelB Na+/melibiose symporter and related transport	100.0
PRK11462	460	putative transporter; Provisional	100.0
PRK10429	473	melibiose:sodium symporter; Provisional	100.0
PRK09669	444	putative symporter YagG; Provisional	100.0
PF13347	428	MFS_2: MFS/sugar transport protein	100.0
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	100.0
PRK09848	448	glucuronide transporter; Provisional	99.98
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.92
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
TIGR00901	356	2A0125 AmpG-related permease.	99.92
PRK03545	390	putative arabinose transporter; Provisional	99.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.92
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.92
PRK10133	438	L-fucose transporter; Provisional	99.91
PRK11902	402	ampG muropeptide transporter; Reviewed	99.91
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.91
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.91
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.91
PLN00028	476	nitrate transmembrane transporter; Provisional	99.91
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.91
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.91
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.91
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.91
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.91
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.91
TIGR00891	405	2A0112 putative sialic acid transporter.	99.9
PRK10091	382	MFS transport protein AraJ; Provisional	99.9
PRK11010	491	ampG muropeptide transporter; Validated	99.9
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.9
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.9
PRK11663	434	regulatory protein UhpC; Provisional	99.9
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.9
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.89
PRK09874	408	drug efflux system protein MdtG; Provisional	99.89
TIGR00893	399	2A0114 d-galactonate transporter.	99.89
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.89
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.89
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.89
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.89
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.89
PRK10504	471	putative transporter; Provisional	99.89
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.89
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.89
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.89
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.88
PRK12307	426	putative sialic acid transporter; Provisional	99.88
PRK09705	393	cynX putative cyanate transporter; Provisional	99.88
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.88
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.88
PRK10054	395	putative transporter; Provisional	99.87
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.87
PRK10642	490	proline/glycine betaine transporter; Provisional	99.87
PRK10489	417	enterobactin exporter EntS; Provisional	99.87
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.87
PRK03699	394	putative transporter; Provisional	99.87
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.87
PRK15011	393	sugar efflux transporter B; Provisional	99.87
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.87
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.86
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.86
PRK09952	438	shikimate transporter; Provisional	99.86
PRK03633	381	putative MFS family transporter protein; Provision	99.86
PRK11043	401	putative transporter; Provisional	99.86
PRK15075	434	citrate-proton symporter; Provisional	99.86
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.86
PRK12382	392	putative transporter; Provisional	99.86
TIGR00895	398	2A0115 benzoate transport.	99.85
PRK09528	420	lacY galactoside permease; Reviewed	99.85
PRK05122	399	major facilitator superfamily transporter; Provisi	99.85
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.85
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.85
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.85
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.84
PRK03893	496	putative sialic acid transporter; Provisional	99.84
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.83
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.83
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.82
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.81
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.8
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.8
KOG2532	466	consensus Permease of the major facilitator superf	99.8
TIGR00805	633	oat sodium-independent organic anion transporter.	99.8
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.79
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.78
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.78
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.78
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.77
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.75
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.75
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	99.75
TIGR00898	505	2A0119 cation transport protein.	99.74
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.73
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.72
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.7
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.7
KOG2533	495	consensus Permease of the major facilitator superf	99.69
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.68
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.67
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.65
KOG0569	485	consensus Permease of the major facilitator superf	99.65
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.63
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.63
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.6
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.6
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.6
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.57
KOG0254	513	consensus Predicted transporter (major facilitator	99.51
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.43
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.43
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.4
KOG0637	498	consensus Sucrose transporter and related proteins	99.39
PTZ00207	591	hypothetical protein; Provisional	99.34
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.28
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.24
PRK09705	393	cynX putative cyanate transporter; Provisional	99.21
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.21
KOG2563	480	consensus Permease of the major facilitator superf	99.19
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.17
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.17
PRK10642	490	proline/glycine betaine transporter; Provisional	99.17
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.16
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.14
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.14
PRK15011	393	sugar efflux transporter B; Provisional	99.12
KOG2615	451	consensus Permease of the major facilitator superf	99.11
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.1
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.1
PRK05122	399	major facilitator superfamily transporter; Provisi	99.09
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.09
PRK11663	434	regulatory protein UhpC; Provisional	99.08
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.07
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.07
KOG3626	735	consensus Organic anion transporter [Secondary met	99.07
PRK03545	390	putative arabinose transporter; Provisional	99.06
PRK10489	417	enterobactin exporter EntS; Provisional	99.06
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.05
PRK10504	471	putative transporter; Provisional	99.05
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.05
TIGR00893	399	2A0114 d-galactonate transporter.	99.05
PRK12382	392	putative transporter; Provisional	99.04
PRK03699	394	putative transporter; Provisional	99.04
PRK09528	420	lacY galactoside permease; Reviewed	99.03
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.02
PRK03633	381	putative MFS family transporter protein; Provision	99.01
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.0
PRK09874	408	drug efflux system protein MdtG; Provisional	98.99
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.98
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.97
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.95
PRK15075	434	citrate-proton symporter; Provisional	98.9
PRK09952	438	shikimate transporter; Provisional	98.89
PRK03893	496	putative sialic acid transporter; Provisional	98.88
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.87
PRK10091	382	MFS transport protein AraJ; Provisional	98.86
PRK11010	491	ampG muropeptide transporter; Validated	98.86
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.86
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.85
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.84
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.84
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.84
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.84
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.82
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.82
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.82
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.8
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.79
TIGR00900	365	2A0121 H+ Antiporter protein.	98.79
PRK12307	426	putative sialic acid transporter; Provisional	98.79
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.78
PLN00028	476	nitrate transmembrane transporter; Provisional	98.78
PRK09848	448	glucuronide transporter; Provisional	98.74
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.74
PF12832	77	MFS_1_like: MFS_1 like family	98.73
TIGR00891	405	2A0112 putative sialic acid transporter.	98.73
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.73
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.72
TIGR00895	398	2A0115 benzoate transport.	98.71
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.69
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.69
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.68
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.68
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.66
PF13347	428	MFS_2: MFS/sugar transport protein	98.65
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.65
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.63
PRK11902	402	ampG muropeptide transporter; Reviewed	98.61
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.59
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.59
KOG0569	485	consensus Permease of the major facilitator superf	98.58
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.57
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.57
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.57
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.55
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.55
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.55
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.54
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.53
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.52
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.51
PRK10054	395	putative transporter; Provisional	98.49
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.48
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.45
TIGR00901	356	2A0125 AmpG-related permease.	98.42
PRK09669	444	putative symporter YagG; Provisional	98.41
PRK10429	473	melibiose:sodium symporter; Provisional	98.41
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.38
PRK10133	438	L-fucose transporter; Provisional	98.36
TIGR00898	505	2A0119 cation transport protein.	98.36
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.35
PRK11043	401	putative transporter; Provisional	98.34
KOG2532	466	consensus Permease of the major facilitator superf	98.34
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.31
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.28
COG2211	467	MelB Na+/melibiose symporter and related transport	98.27
PRK11462	460	putative transporter; Provisional	98.19
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.17
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.11
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.1
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.09
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.05
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.02
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.99
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.91
KOG2533	495	consensus Permease of the major facilitator superf	97.87
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.87
PF12832	77	MFS_1_like: MFS_1 like family	97.72
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.71
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.68
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.64
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.6
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.56
COG0477	338	ProP Permeases of the major facilitator superfamil	97.53
KOG3762	618	consensus Predicted transporter [General function	97.49
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.48
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.37
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.33
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.31
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.26
KOG0254	513	consensus Predicted transporter (major facilitator	97.24
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.2
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.92
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	96.74
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.7
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.66
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.63
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.45
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.93
KOG3762	618	consensus Predicted transporter [General function	95.87
TIGR00805	633	oat sodium-independent organic anion transporter.	95.74
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	95.74
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.39
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.6
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	94.17
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	93.8
PTZ00207	591	hypothetical protein; Provisional	93.38
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	93.32
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	93.11
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	92.59
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	92.33
PRK03612	521	spermidine synthase; Provisional	92.02
KOG2563	480	consensus Permease of the major facilitator superf	90.72
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	90.29
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	89.62
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	89.14
KOG3097	390	consensus Predicted membrane protein [Function unk	88.71
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	88.42
COG3202	509	ATP/ADP translocase [Energy production and convers	86.69
KOG2816	463	consensus Predicted transporter ADD1 (major facili	86.47
KOG3098	461	consensus Uncharacterized conserved protein [Funct	85.48
KOG0637	498	consensus Sucrose transporter and related proteins	84.61
KOG1330	493	consensus Sugar transporter/spinster transmembrane	84.28
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	83.84
KOG3810	433	consensus Micronutrient transporters (folate trans	83.39
KOG2615	451	consensus Permease of the major facilitator superf	82.18

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.4e-39  Score=307.43  Aligned_cols=317  Identities=20%  Similarity=0.252  Sum_probs=265.4

Q ss_pred             CCCCCCCCCchHhhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhc----ccCC
Q 018940           14 DDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGH   88 (348)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~D----r~Gr   88 (348)
                      +|+.+++++.+++++|++|+++.++.......|++.||+|+ |+|+..+|.+..+.+++|++.||+.|.++|    ||||
T Consensus         2 ~~~~~~kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr   81 (467)
T COG2211           2 QNSSSKKLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGR   81 (467)
T ss_pred             CCcccCcccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccccccccc
Confidence            45667899999999999999999999999999999999998 999999999999999999999999999999    5999


Q ss_pred             chHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHH
Q 018940           89 FKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR  168 (348)
Q Consensus        89 rr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~  168 (348)
                      ||||+++++++.++..+++|.  .|. ++...+..+..+.|    .+++++|+..+.|+.++.++++++++||.+++++|
T Consensus        82 fRP~lL~g~ip~~i~~~l~F~--~p~-~~~~~k~~ya~vtY----~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R  154 (467)
T COG2211          82 FRPWLLWGAIPFAIVAVLLFI--TPD-FSMTGKLIYALVTY----MLLGLGYTLVNIPYGALGPEITQDPQERASLTSWR  154 (467)
T ss_pred             ccHHHHHHhHHHHHHHHHHHc--CCC-cccCcchHHHHHHH----HHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHH
Confidence            999999999999999988886  342 22223444444445    47889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-c--CCchhHHHHHH
Q 018940          169 NAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-R--GNSHARISWAY  245 (348)
Q Consensus       169 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~-~--~~~~~~~~~~~  245 (348)
                      +.+.++|..+...+.+|++..+++   +|...||+....++++++.+..+++++.+|||..+.++ +  .+.+.++.+..
T Consensus       155 ~~~~~~g~~l~~~~~~plv~~~g~---~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~  231 (467)
T COG2211         155 MVFASLGGLLVAVLFPPLVKLFGG---GDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLL  231 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC---CcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHH
Confidence            999999999999999999988775   23478999999999999999999999999997653332 1  34556667778


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHH
Q 018940          246 WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGG  324 (348)
Q Consensus       246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~  324 (348)
                      ++|||+++.+++.+++...+.+...+....|.+..+|.+.............+.+++.++.|.+ +|+|||  +++.++.
T Consensus       232 ~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk--~~~~~~~  309 (467)
T COG2211         232 IFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK--KLFLIGL  309 (467)
T ss_pred             HHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH--HHHHHHH
Confidence            9999999988888888877777666666777777777666544444444445556668888988 999999  9999999


Q ss_pred             HHHHHHHHhHhhccCCce
Q 018940          325 VLWVFCGAGILILPMNMS  342 (348)
Q Consensus       325 ~l~~v~~~~~~~~~~~~~  342 (348)
                      ++.+++++.++|.+.+..
T Consensus       310 ~~~~i~~~~~~f~~~~~~  327 (467)
T COG2211         310 LLLAVGYLLLYFTPAGSV  327 (467)
T ss_pred             HHHHHHHHHHHhhcCcch
Confidence            999999999999985543

>PRK11462 putative transporter; Provisional

Probab=100.00  E-value=7.1e-34  Score=277.14  Aligned_cols=303  Identities=15%  Similarity=0.225  Sum_probs=233.6

Q ss_pred             CCCCchHhhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcc----cCCchHHH
Q 018940           19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWH   93 (348)
Q Consensus        19 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr----~Grrr~~i   93 (348)
                      ++++.++++.|++|+++.+..+.++..|++.||+|+ |+++..+|.++.+.+++|++.||+.|+++||    |||||||+
T Consensus         4 ~~l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~i   83 (460)
T PRK11462          4 EVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWV   83 (460)
T ss_pred             CcccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhH
Confidence            578999999999999999999999999999999998 9999999999999999999999999999994    89999999


Q ss_pred             HHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHH
Q 018940           94 GAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM  173 (348)
Q Consensus        94 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~  173 (348)
                      +.+.++.+++++++|.  .|. +    +.....+++.+...++.+++++.++|+.++.+|+++|++||+++++++..+.+
T Consensus        84 l~g~i~~~i~~~llf~--~p~-~----s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~  156 (460)
T PRK11462         84 LFGALPFGIVCVLAYS--TPD-L----SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLAT  156 (460)
T ss_pred             hHHHHHHHHHHHHHHh--CCC-C----CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            9999999999988875  352 1    11112233333334678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHH
Q 018940          174 VANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYY  253 (348)
Q Consensus       174 ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (348)
                      +|..+++.+..|++..+++   ++...+|+....+++++++++.++++...||+.+++  +++.+.++.++..++||+++
T Consensus       157 iG~~~~~~~~~plv~~~g~---~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~--~~~~~~~~~l~~~~~Nk~~~  231 (460)
T PRK11462        157 AGGMLSTVLMMPLVNLIGG---DNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAP--PTTTSMREDLRDIWQNDQWR  231 (460)
T ss_pred             HHHHHHHHHHHHHHHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCC--ccCCCHHHHHHHHhCChHHH
Confidence            9998888887787766553   123468998888888888888888888888864322  22334677888999999988


Q ss_pred             HHHHHHH---HHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHH
Q 018940          254 QVALVYM---LTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVF  329 (348)
Q Consensus       254 ~~~l~~~---~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v  329 (348)
                      .+....+   +......+...|+.+|..+..   . ..+.+..+..++++++.++.+++ ||+|||  +.+..+..+.++
T Consensus       232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~---~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk--~~~~~~~~~~~~  305 (460)
T PRK11462        232 IVGLLTIFNILAVCVRGGAMMYYVTWILGTP---E-VFVAFLTTYCVGNLIGSALAKPLTDWKCKV--TIFWWTNALLAV  305 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh---H-HHHHHHHHHHHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHH
Confidence            7654433   334455677778888875432   2 22334445567788888889987 999998  766555444444


Q ss_pred             HHHhHhhccC
Q 018940          330 CGAGILILPM  339 (348)
Q Consensus       330 ~~~~~~~~~~  339 (348)
                      ..+.+++.+.
T Consensus       306 ~~~~~~~~~~  315 (460)
T PRK11462        306 ISLAMFFVPM  315 (460)
T ss_pred             HHHHHHHhch
Confidence            4444445443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=100.00  E-value=5.1e-33  Score=272.31  Aligned_cols=304  Identities=16%  Similarity=0.210  Sum_probs=232.5

Q ss_pred             CCCchHhhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhc----ccCCchHHHH
Q 018940           20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHG   94 (348)
Q Consensus        20 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~D----r~Grrr~~i~   94 (348)
                      +++.+++++|++|+++.+..+..+.+|+++||+|+ |+|+.++|.++++.+++|++.||+.|+++|    ||||||||++
T Consensus         2 ~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il   81 (473)
T PRK10429          2 SISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL   81 (473)
T ss_pred             CCchhHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence            57789999999999999999999999999999998 999999999999999999999999999999    6799999999


Q ss_pred             HHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHH
Q 018940           95 AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV  174 (348)
Q Consensus        95 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~i  174 (348)
                      .+.++.+++++++|.  .|.     .+.....+++.+...++++++++.++|+.++.+|++++++||.++++++..+.++
T Consensus        82 ~g~i~~~i~~~llf~--~p~-----~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~i  154 (473)
T PRK10429         82 IGTLANSVVLFLLFS--AHL-----FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASL  154 (473)
T ss_pred             hhhHHHHHHHHHHHc--CCC-----CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHH
Confidence            999999998877775  231     1111122233333346788999999999999999998899999999998888888


Q ss_pred             HHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccc----ccCCchhHHHHHHHHHhH
Q 018940          175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----LRGNSHARISWAYWFKKI  250 (348)
Q Consensus       175 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~  250 (348)
                      |+.+.+.+..|++..++..   +...+|++...+++++..+..+++++.+||+..+++    ++++.+.++.++.+++||
T Consensus       155 g~~~~~~~~~~~~~~~g~~---~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~  231 (473)
T PRK10429        155 AGFVTAGFTLPFVNYVGGG---DRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKND  231 (473)
T ss_pred             HHHHHHHHHHHHHHHhCCC---chhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCH
Confidence            8777776666766554431   234589998888888888888888888888632211    123345677788888999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHH
Q 018940          251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVF  329 (348)
Q Consensus       251 ~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v  329 (348)
                      +++.+.+..++.+...+....+.+.|.+...+. .+..+.+..+..++.+++.++.+++ ||+|||  +.+..++++.++
T Consensus       232 ~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk--~~~~~~~~~~~~  308 (473)
T PRK10429        232 QLSCLLGMALAYNIASNIINGFAIYYFTYVIGD-ADLFPYYLSYAGAANLVTLILFPRLVKSLSRR--ILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhheeeEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHH
Confidence            988877777766666666666655444444443 3333344444456778888888887 999999  888888887777


Q ss_pred             HHHhHhh
Q 018940          330 CGAGILI  336 (348)
Q Consensus       330 ~~~~~~~  336 (348)
                      +.+.+++
T Consensus       309 ~~~~~~~  315 (473)
T PRK10429        309 SCGVLLL  315 (473)
T ss_pred             HHHHHHH
Confidence            7665543

>PRK09669 putative symporter YagG; Provisional

Probab=100.00  E-value=7.7e-33  Score=268.91  Aligned_cols=309  Identities=18%  Similarity=0.189  Sum_probs=229.7

Q ss_pred             CCCCchHhhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcc----cCCchHHH
Q 018940           19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWH   93 (348)
Q Consensus        19 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr----~Grrr~~i   93 (348)
                      ++++.++++.|++|+++.+..+..+..|+++||+|. |+|+.++|.++++.+++|++.||+.|+++||    |||||||+
T Consensus         4 ~~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~i   83 (444)
T PRK09669          4 SQLTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYL   83 (444)
T ss_pred             CcccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhH
Confidence            578999999999999999998888899999999997 9999999999999999999999999999997    99999999


Q ss_pred             HHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHH
Q 018940           94 GAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM  173 (348)
Q Consensus        94 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~  173 (348)
                      +.+.++.+++..++|.  .|. .    +.......+.+...+++.++++.++|+.++.+|++++++||+++++++..+.+
T Consensus        84 l~~~~~~~i~~~l~f~--~p~-~----~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~  156 (444)
T PRK09669         84 LWFAIPFGVVCLLTFY--TPD-F----GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSF  156 (444)
T ss_pred             HHHHHHHHHHHHHHHh--CCC-C----CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHH
Confidence            9999998888876664  352 1    11111222232234667888999999999999999888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHH
Q 018940          174 VANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYY  253 (348)
Q Consensus       174 ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (348)
                      +|+.+++.+..|+...++.   ++...+|+..+.+++++..+..+++++..||+..+++ +++.+.++.+++++|||+++
T Consensus       157 ~G~~i~~~~~~pl~~~~~~---~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~n~~~~  232 (444)
T PRK09669        157 IGGLIVSVIALPLVDILGK---GDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEV-DNSSSVWKDLKLLLGNSQWR  232 (444)
T ss_pred             HHHHHHHHHHHHHHHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCC-cCCCCHHHHHHHHhCCchHH
Confidence            9998888877777766542   1235689999988888888887788888888543322 23344567788999999988


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHH
Q 018940          254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA  332 (348)
Q Consensus       254 ~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~  332 (348)
                      .+.+..++............+.|.+...+.. +..+.+.....++++++.++.+++ ||+|||  +.+..+.++.+++.+
T Consensus       233 ~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~--~~~~~~~~~~~~~~~  309 (444)
T PRK09669        233 IMFIFNVVLLTAVVTRGGATLYYVNYVLLRP-DLATLFLVTGMIAGLFGALLSERLLGKFDRV--RAFKWTIVAFVILSA  309 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeeeeecCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHHHH
Confidence            8766655554444333333333333333322 222233334456677888888887 999999  888888777666555


Q ss_pred             hHhhccCCc
Q 018940          333 GILILPMNM  341 (348)
Q Consensus       333 ~~~~~~~~~  341 (348)
                      .+++.+++.
T Consensus       310 ~~~~~~~~~  318 (444)
T PRK09669        310 LIFFIPPSN  318 (444)
T ss_pred             HHHHhCcch
Confidence            555554433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=100.00  E-value=3.3e-34  Score=277.27  Aligned_cols=305  Identities=25%  Similarity=0.374  Sum_probs=243.5

Q ss_pred             HhhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhc----ccCCchHHHHHHHHH
Q 018940           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGSVL   99 (348)
Q Consensus        25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~D----r~Grrr~~i~~~~~~   99 (348)
                      ++.+|++|+++.+..+.....|+++|++|. |+++..+|.+..+.+++|++.||+.|+++|    ||||||||++.|.++
T Consensus         2 ~~~ay~~g~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~   81 (428)
T PF13347_consen    2 KKLAYGIGDLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAIL   81 (428)
T ss_pred             cEEEeeHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHH
Confidence            346799999999999999999999999998 999999999999999999999999999999    799999999999999


Q ss_pred             HHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHH
Q 018940          100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (348)
Q Consensus       100 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~  179 (348)
                      .+++++++|.+ .|...+    .........+...++.++++..++|+.++.+|++++++||.+++++++.+..+|..+.
T Consensus        82 ~~~~~~llf~~-~p~~~~----~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~  156 (428)
T PF13347_consen   82 LALSFFLLFSP-PPAGLS----FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLA  156 (428)
T ss_pred             HHHHHHHhhcc-ccchhh----hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHH
Confidence            99999888741 132111    1111122233334678999999999999999999989999999999999999999877


Q ss_pred             HHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccc-ccccCCchhHHHHHHHHHhHHHHHHHHH
Q 018940          180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK-MGLRGNSHARISWAYWFKKILYYQVALV  258 (348)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~  258 (348)
                      +.+.++++..++..   +...+|++...+.+++..+..++.++.+||++.+ ++++++.+.++.+++++|||+++.+.+.
T Consensus       157 ~~~~~~l~~~~g~~---~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~  233 (428)
T PF13347_consen  157 SFLAPILVSWFGGG---DTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLA  233 (428)
T ss_pred             HHHhhhhhhhhccC---ccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHHHHHHH
Confidence            77777777655531   1124899999999999999999999999993222 2233455667788999999999988888


Q ss_pred             HHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       259 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      .++.+.+........+.|.++..|.+. ..+.+..+..++++++.++.+++ ||+|||  +.+..+.++.+++.+++++.
T Consensus       234 ~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~--~~~~~~~~~~~~~~~~~~~~  310 (428)
T PF13347_consen  234 FFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKK--KVYIIGLLLAALGFLLLFFL  310 (428)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccce--eehhhhHHHHHHHHHHHHHH
Confidence            777777666666566666666666553 33445555677888999989998 999999  99999999999999999988


Q ss_pred             cCC
Q 018940          338 PMN  340 (348)
Q Consensus       338 ~~~  340 (348)
                      +++
T Consensus       311 ~~~  313 (428)
T PF13347_consen  311 GPG  313 (428)
T ss_pred             Hhh
Confidence            743

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=100.00  E-value=2.9e-31  Score=256.72  Aligned_cols=300  Identities=20%  Similarity=0.288  Sum_probs=231.4

Q ss_pred             hhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcc----cCCchHHHHHHHHHH
Q 018940           26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSVLV  100 (348)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr----~Grrr~~i~~~~~~~  100 (348)
                      ++.|++|+++.+..+.+..+|+++|++|. |+|+.++|+++++..+++++.+|+.|+++||    +|||||+++.+.++.
T Consensus         1 ~~~yg~g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~   80 (437)
T TIGR00792         1 KLSYGFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPF   80 (437)
T ss_pred             CeeeecchHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHH
Confidence            46899999999999999999999999987 9999999999999999999999999999996    899999999998888


Q ss_pred             HHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHH
Q 018940          101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (348)
Q Consensus       101 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~  180 (348)
                      +++...++.  .|.     .+.......+.+...+.+++++...+|+.++.+|++++++||+++.++++.+..+|+.+++
T Consensus        81 ~i~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~  153 (437)
T TIGR00792        81 SIVLVLLFT--TPD-----FSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVA  153 (437)
T ss_pred             HHHHHHHHh--CCC-----CCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888776664  231     1111112223333346788889999999999999998889999999999999999998888


Q ss_pred             HHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--cCCchhHHHHHHHHHhHHHHHHHHH
Q 018940          181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNSHARISWAYWFKKILYYQVALV  258 (348)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~  258 (348)
                      .+.+|+...+++   +++..+|++.+.+.++++++..++.++.+||++.+.++  +++.+.++.++++++||+++...+.
T Consensus       154 ~~~~~l~~~~~~---~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  230 (437)
T TIGR00792       154 VIVLPLVSYFGG---GDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLA  230 (437)
T ss_pred             HHHHHHHHHhCC---CcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHH
Confidence            877777765442   12356899999999888888888888888886432111  2233456778889999998887777


Q ss_pred             HHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       259 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      .++.+........+.+.|.+...+ +....+.+..+..++.+++.++.+++ ||+|||  +.+..+..+.+++.+...+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~--~~~~~~~~~~~~~~~~~~~~  307 (437)
T TIGR00792       231 YLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK--ILFAGGILLMVLGYLIFFFA  307 (437)
T ss_pred             HHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHc
Confidence            776666666655555666665555 33334444455567888889889987 999999  88888988888887776665


Q ss_pred             c
Q 018940          338 P  338 (348)
Q Consensus       338 ~  338 (348)
                      +
T Consensus       308 ~  308 (437)
T TIGR00792       308 G  308 (437)
T ss_pred             c
Confidence            4

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09848 glucuronide transporter; Provisional

Probab=99.98  E-value=6.7e-30  Score=248.56  Aligned_cols=308  Identities=17%  Similarity=0.215  Sum_probs=226.2

Q ss_pred             CCCCchHhhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcc----cCCchHHH
Q 018940           19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWH   93 (348)
Q Consensus        19 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr----~Grrr~~i   93 (348)
                      ++++.++++.|++|+++++....+..+|++.|+++. |+++.++|.++++..+++++.+|+.|+++||    +||||||+
T Consensus         3 ~~~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~   82 (448)
T PRK09848          3 QQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFL   82 (448)
T ss_pred             CcccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHH
Confidence            578899999999999999999999899999999997 9999999999999999999999999999997    59999998


Q ss_pred             HHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHH
Q 018940           94 GAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM  173 (348)
Q Consensus        94 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~  173 (348)
                      +.+.++..+....++.  .|..+.+....    ....+...+.+++++..++|+.++..+++.+++||.+.+++|..+.+
T Consensus        83 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~  156 (448)
T PRK09848         83 LFGTAPLMIFSVLVFW--VPTDWSHSSKV----VYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAAS  156 (448)
T ss_pred             HHHHHHHHHHHHHHHh--CcCCCCcchHH----HHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence            8888777766655553  23111111111    11222223677889999999999999999888999999999988877


Q ss_pred             HHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHH
Q 018940          174 VANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYY  253 (348)
Q Consensus       174 ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (348)
                      ++....+...+|++....+   ++...+|.....++++++.+..++++...||+..++  +++.+.++.+++++|||+++
T Consensus       157 ~~~~~~~~~~~p~i~~~~g---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~l~~n~~f~  231 (448)
T PRK09848        157 LTFVCLAFLIGPSIKNSSP---EEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRI--VAQPSLKISLQTLKRNRPLF  231 (448)
T ss_pred             HHHHHHHHHHHHHHHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCC--ccCCCHHHHHHHHhCCchHH
Confidence            7766655555666654322   111224433334455666666666666778753322  22334566788899999998


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHH
Q 018940          254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA  332 (348)
Q Consensus       254 ~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~  332 (348)
                      ...+..++...+......+.|.|+++..|.+.....+......++.+++.++.+++ ||+|+|  +.+..|.++.+++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~--~~~~~g~~~~~i~~~  309 (448)
T PRK09848        232 MLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK--NTFLIGALLGTCGYL  309 (448)
T ss_pred             HHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHH
Confidence            88777777777777777778888888888766443333222334567777888887 999999  889999999888887


Q ss_pred             hHhhccC
Q 018940          333 GILILPM  339 (348)
Q Consensus       333 ~~~~~~~  339 (348)
                      .+.+.+.
T Consensus       310 ~~~~~~~  316 (448)
T PRK09848        310 LFFWVSV  316 (448)
T ss_pred             HHHHcCc
Confidence            7776543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.92  E-value=1.4e-22  Score=192.22  Aligned_cols=273  Identities=13%  Similarity=0.054  Sum_probs=195.2

Q ss_pred             HHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcc
Q 018940           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (348)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~  116 (348)
                      ........+.+|.+.++.|.|+.+.|++.++..+...+.+++.|+++||+||||.++ .+....+++......  .    
T Consensus        18 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~-~~~~~~~~~~~~~~~--~----   90 (385)
T TIGR00710        18 PLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLL-LGLFIFALSSLGLAL--S----   90 (385)
T ss_pred             HHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHH-HHHHHHHHHHHHHHH--H----
Confidence            334445556666666677999999999999999999999999999999999988754 566666665543321  1    


Q ss_pred             cCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc
Q 018940          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA  196 (348)
Q Consensus       117 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~  196 (348)
                         .+.....+.    ..+.+++.+...++..+++.|..+ +++|++..+..+....+|..+++.+.+.+.         
T Consensus        91 ---~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---------  153 (385)
T TIGR00710        91 ---NNIETLLVL----RFVQAFGASAGSVISQALVRDIYP-GEELSRIYSILMPVLALAPAVAPLLGGYIL---------  153 (385)
T ss_pred             ---ccHHHHHHH----HHHHHcchhHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence               123322222    235677777777788889999885 678999999998888888877766654433         


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 018940          197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY  276 (348)
Q Consensus       197 ~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y  276 (348)
                       +..+|++.+.+.+++.++..++.++..||++.+++++++++.++.+++.+|||+++...+...+..........+.|.|
T Consensus       154 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (385)
T TIGR00710       154 -VWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFV  232 (385)
T ss_pred             -HHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHH
Confidence             2357999988887777777666666677754332222222334456778899988776666555556666777788999


Q ss_pred             HhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhh
Q 018940          277 VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI  336 (348)
Q Consensus       277 l~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~  336 (348)
                      ++++.|.++.+.+.......++.+++.++.+++ ||+|+|  +.+..+..+..++.+.+.+
T Consensus       233 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~~~~~~~~~~~~~  291 (385)
T TIGR00710       233 YIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK--SLLRMGLILFAVSAVLLEI  291 (385)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHH
Confidence            998889988777766666677888899999997 999998  7777777666666555444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=4.1e-22  Score=186.96  Aligned_cols=286  Identities=15%  Similarity=0.082  Sum_probs=193.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcC
Q 018940           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (348)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~  110 (348)
                      .+.+.......+....+|.|..+.+.++.++|++.++..+..++.+|+.|+++||+||||.++ .+....++....... 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~-~~~~~~~~~~~~~~~-   83 (365)
T TIGR00900         6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMI-GADLIRAVLVAVLPF-   83 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHH-HHHHHHHHHHHHHHH-
Confidence            344555555666677788888888999999999999999999999999999999999999865 454444444322211 


Q ss_pred             cCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018940          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~  190 (348)
                       .+.  ....+.+.....    ..+.+++.+...++..++++|..+ ++||++..++.+....+|..+++.+++.+.   
T Consensus        84 -~~~--~~~~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~---  152 (365)
T TIGR00900        84 -VAL--LGGLNIWQVYVL----AGILAIAQAFFTPAYQAMLPDLVP-EEQLTQANSLSQAVRSLFYIVGPGIGGLMY---  152 (365)
T ss_pred             -HHH--cCCCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---
Confidence             010  001133322222    235677778888888899999885 578999999999999999888776655443   


Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHHHHHHHHhh-cccccccccccCC----chhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018940          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR-TEEPRLKMGLRGN----SHARISWAYWFKKILYYQVALVYMLTRLV  265 (348)
Q Consensus       191 ~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~-~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  265 (348)
                             +..+|++.+.+.++..++..++.+.. .||++.+++++.+    ++.++.++..+|||.++...+..++....
T Consensus       153 -------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (365)
T TIGR00900       153 -------ATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLV  225 (365)
T ss_pred             -------HHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHH
Confidence                   24589998887665554443333322 2332111111111    12344567788888887766666555555


Q ss_pred             HHhhh-HHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhcc
Q 018940          266 VNVSQ-AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP  338 (348)
Q Consensus       266 ~~~~~-~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~~  338 (348)
                      ..... .+.|.|.++..|.+..+.+.......++.+++.++.+++ ||++||  +.+..+..+.+++.....+.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  298 (365)
T TIGR00900       226 FAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM--ALMTGAIFVIGLAILVVGLTP  298 (365)
T ss_pred             HHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh--HHHHHHHHHHHHHHHHHHhhc
Confidence            55555 788888888788888777766666777888888888888 888888  777777766666666555544

>TIGR00901 2A0125 AmpG-related permease

Probab=99.92  E-value=4.5e-22  Score=187.53  Aligned_cols=278  Identities=13%  Similarity=0.065  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhccc-----CCchHHHHHHHHHHHHHHHHHhcCcCCCcc
Q 018940           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~-----Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~  116 (348)
                      .....+|.+.+|.|+|.+++|.+... .+..++ ++++|+++||+     ||||++++.+.+..++.+..+..  .+   
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~--~~---   78 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF--LV---   78 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc--CC---
Confidence            34456677778889999999999766 444455 99999999997     99999887777777666543321  12   


Q ss_pred             cCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc
Q 018940          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA  196 (348)
Q Consensus       117 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~  196 (348)
                       +..+......    ...+.+.+.+...++..++++|..+ +|+|+++.+++..+..+|.++++.+.+.+...++..+  
T Consensus        79 -~~~~l~~l~~----~~~~~~~~~~~~~~~~~a~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~--  150 (356)
T TIGR00901        79 -PSTDLPLLAG----LAFLIAFFSATQDIALDAWRLEILS-DEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT--  150 (356)
T ss_pred             -cchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCC-HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--
Confidence             1112221211    1124556667778889999999984 6889999999999999998888777655554333110  


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhccccccccccc--CCchhHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhhhH
Q 018940          197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKIL---YYQVALVYMLTRLVVNVSQA  271 (348)
Q Consensus       197 ~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~  271 (348)
                      ....+||..+++.++..++..++.++..||++.+++++  ++++.++.+++++|||.   ++.+.+..++.+...+...+
T Consensus       151 ~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (356)
T TIGR00901       151 GLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATV  230 (356)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence            12345999999888777666555555567753321111  11223456777888875   55555556666677788889


Q ss_pred             HHHHHHhhcccccchhhhHHhHHHH-HHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          272 YLAFYVINDLRMGQSAKALVPAIIY-ICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       272 ~~~~yl~~~~~~~~~~~~~~~~~~~-~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      ++|.|+++ .|++.++.+....+.. ++.+++.++.+++ ||+|+|  +.+..+.++.+++.....+.
T Consensus       231 ~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~--~~l~~~~~~~~~~~~~~~~~  295 (356)
T TIGR00901       231 LTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL--YALLLFGIVQALTNAGFVWL  295 (356)
T ss_pred             HHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHH
Confidence            99999988 7888877665444333 4667888999998 999998  77777777777766655443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.92  E-value=8.4e-22  Score=188.19  Aligned_cols=274  Identities=10%  Similarity=-0.036  Sum_probs=186.4

Q ss_pred             HhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHH
Q 018940           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (348)
Q Consensus        25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~  104 (348)
                      ....-.+..+..........+.+|.+.+|.|.|+.++|++.+...+...+.+++.|.++||+||||.+. .+....+++.
T Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~   88 (390)
T PRK03545         10 RVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLI-GLFVLFIASH   88 (390)
T ss_pred             HHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHH
Confidence            344445555544333344445667776777999999999999999999999999999999999998764 5666666665


Q ss_pred             HHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 018940          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (348)
Q Consensus       105 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~  184 (348)
                      .....  .       .+.....+.+    .+.+++.+...+...+++++..+ +|+|++..++...+..+|..+++.+.+
T Consensus        89 ~~~~~--~-------~~~~~l~~~r----~~~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~g~~~~~~~~g~~ig~~l~~  154 (390)
T PRK03545         89 VLSAL--A-------WNFTVLLISR----IGIAFAHAIFWSITASLAIRVAP-AGKKAQALSLLATGTALAMVLGLPLGR  154 (390)
T ss_pred             HHHHH--h-------ccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCC-hhhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence            43321  1       2333332222    35566666666667788888875 678999999988888888777655543


Q ss_pred             HHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018940          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRL  264 (348)
Q Consensus       185 ~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  264 (348)
                      .+.          +..|||+.+.+.+++.++..++.+...||++++    ++++ .+..++.+|||.++...+..++...
T Consensus       155 ~l~----------~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  219 (390)
T PRK03545        155 VIG----------QYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE----HSGS-LKSLPLLFRRPALVSLYLLTVVVVT  219 (390)
T ss_pred             HHH----------HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC----Ccch-HHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            332          245899999988887777666666566664321    1111 2345678999987765555555545


Q ss_pred             HHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 018940          265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG  331 (348)
Q Consensus       265 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~  331 (348)
                      .......|.+.|+++..|.+..+.+.......++++++.++.+++ ||+++|  +. ..+..+..++.
T Consensus       220 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~--~~-~~~~~~~~~~~  284 (390)
T PRK03545        220 AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG--FL-LIAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh--HH-HHHHHHHHHHH
Confidence            555566788888888888887766666566677889999999988 998876  54 33433333333

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=9.1e-22  Score=184.04  Aligned_cols=294  Identities=12%  Similarity=-0.006  Sum_probs=230.7

Q ss_pred             CCCCCCchHhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHH
Q 018940           17 FTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAG   96 (348)
Q Consensus        17 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~   96 (348)
                      .+++......+..+++.|.....-.+..+.+|+.-+|+|+|..++|.+.+++.+..+++.|+...+.||+.|||.+ +..
T Consensus         6 ~~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lL-l~~   84 (394)
T COG2814           6 TARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLL-LGL   84 (394)
T ss_pred             cccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH-HHH
Confidence            3555667778889999988888888889999999999999999999999999999999999999999999998875 456


Q ss_pred             HHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHH
Q 018940           97 SVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN  176 (348)
Q Consensus        97 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~  176 (348)
                      ..+++++-.+...  .|       ++....+.+.    +.++..+.+..-..+..+++.| |++|+++.+....+..++.
T Consensus        85 l~lFi~~n~l~al--Ap-------~f~~Ll~aR~----~~g~a~G~f~~i~~~~a~~lvp-p~~~~~Aiaiv~~G~tlA~  150 (394)
T COG2814          85 LALFIVSNLLSAL--AP-------SFAVLLLARA----LAGLAHGVFWSIAAALAARLVP-PGKRGRALALVFTGLTLAT  150 (394)
T ss_pred             HHHHHHHHHHHHH--hc-------cHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcC-ccchhhHHHHHHHHHHHHH
Confidence            6677777654332  12       4554545554    5556666666666778888885 6789999998887777776


Q ss_pred             HHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHH
Q 018940          177 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVA  256 (348)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (348)
                      +++    .|+-..++      +..|||+.|...+.++++..+..+..+| ++..++ +++.+.++. .+.+|||+.+...
T Consensus       151 v~G----vPLGt~ig------~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~-~~~~~~~~~-~~~l~~p~v~~~l  217 (394)
T COG2814         151 VLG----VPLGTFLG------QLFGWRATFLAIAVLALLALLLLWKLLP-PSEISG-SLPGPLRTL-LRLLRRPGVLLGL  217 (394)
T ss_pred             HHh----ccHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCCC-CCCcchhHH-HHHhcCchHHHHH
Confidence            664    45544444      3689999999999999999999888888 222111 122222333 4689999988888


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHh
Q 018940          257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGIL  335 (348)
Q Consensus       257 l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~  335 (348)
                      +..++...+.....+|+-.+++|..|++.+..+...+.+++++++|+.+.+++ || +.|  +++.....+.++..+.+.
T Consensus       218 ~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~--~~l~~~~~l~a~~~l~l~  294 (394)
T COG2814         218 LATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR--RALIAALLLLALALLALT  294 (394)
T ss_pred             HHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch--hHHHHHHHHHHHHHHHHH
Confidence            88888888889999999999999999999888888888999999999999998 88 777  888888888888888777


Q ss_pred             hccCCc
Q 018940          336 ILPMNM  341 (348)
Q Consensus       336 ~~~~~~  341 (348)
                      +.+.+.
T Consensus       295 ~~~~~~  300 (394)
T COG2814         295 FTGASP  300 (394)
T ss_pred             HhcchH
Confidence            766554

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.92  E-value=2.5e-22  Score=189.37  Aligned_cols=291  Identities=10%  Similarity=0.005  Sum_probs=190.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHh-hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHh
Q 018940           30 GSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF  108 (348)
Q Consensus        30 ~~g~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~  108 (348)
                      .+..+.....+....+++|.++++ .|+|+.+.|++.++..+.+++.+++.|+++||+||||.++ .+....+++.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~i~~~~~~   85 (366)
T TIGR00886         7 WFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTT-LSLLLLAIPCLWAG   85 (366)
T ss_pred             HHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHH-HHHHHHHHHHHHHH
Confidence            334444455556667788865655 5999999999999999999999999999999999998754 56666666654332


Q ss_pred             cCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~  188 (348)
                      .  .+      .+.....+.+    .+.+++.+. ..+..+++++..+ +++|++..++.....++|..+++.+.+++..
T Consensus        86 ~--~~------~~~~~~~~~~----~~~g~~~~~-~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886        86 L--AV------QSYSVLLLLR----LFIGIAGGS-FASCMPWISFFFP-KKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             H--Hh------hhHHHHHHHH----HHHHHhchh-hHhHHHHHHHhcC-HhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            1  11      0233222222    245555443 3455677888774 6789999999888888888887777666655


Q ss_pred             hccCCcccchhhHHHHHH-HHHHHHHHHHHHHHHhhcccccccccccCCch-----------hHHHHHHHHHhHHHHHHH
Q 018940          189 VSTAKTHADLENQYRWIA-YSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSH-----------ARISWAYWFKKILYYQVA  256 (348)
Q Consensus       189 ~~~~~~~~~~~~g~~~~~-~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  256 (348)
                      .+......+...+||+.+ ...+++..+..++.+...+|.+.+++++++.+           ..+..++.+++|+++...
T Consensus       152 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (366)
T TIGR00886       152 SLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILA  231 (366)
T ss_pred             HHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHH
Confidence            332100001234799988 44455555555555555555322111110000           011456678888877776


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHh
Q 018940          257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGIL  335 (348)
Q Consensus       257 l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~  335 (348)
                      +..++..........+.|.|+++..|.+..+.+.+..+..+.++++.++.+++ ||+|+|  +....+..+...+...+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~--~~~~~~~~~~~~~~~~~~  309 (366)
T TIGR00886       232 LLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA--RKLLMSFLGVAMGAFLVV  309 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc--hhHHHHHHHHHHHHHHHH
Confidence            66666666667788899999999989888777766666667788888888988 999998  666666655555554444


Q ss_pred             hc
Q 018940          336 IL  337 (348)
Q Consensus       336 ~~  337 (348)
                      +.
T Consensus       310 ~~  311 (366)
T TIGR00886       310 LG  311 (366)
T ss_pred             hc
Confidence            43

>PRK10133 L-fucose transporter; Provisional

Probab=99.91  E-value=3.4e-21  Score=186.90  Aligned_cols=323  Identities=11%  Similarity=-0.018  Sum_probs=207.7

Q ss_pred             CcccccccCCCCCCCCCCCCCchHhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHh
Q 018940            2 TSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGE   81 (348)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~   81 (348)
                      ||-....||..|||-..++-.........+..+...+.......++|.+.++.|+|+.+.|++.+...+..++++++.|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~   83 (438)
T PRK10133          4 TSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGI   83 (438)
T ss_pred             cccchhhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444568888888765554544444444444444555556667777775556999999999999999999999999999


Q ss_pred             hhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccc
Q 018940           82 LIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSR  161 (348)
Q Consensus        82 l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R  161 (348)
                      ++||+||||.+ ..+....+++.....    +..  ...+.......    ..+.|++.+...+..++++.+.. ++++|
T Consensus        84 l~dr~G~r~~l-~~g~~~~~~~~~l~~----~~~--~a~~~~~ll~~----r~l~G~g~g~~~~~~~~~v~~~~-~~~~~  151 (438)
T PRK10133         84 LMKKLSYKAGI-ITGLFLYALGAALFW----PAA--EIMNYTLFLVG----LFIIAAGLGCLETAANPFVTVLG-PESSG  151 (438)
T ss_pred             HHHHhCcHHHH-HHHHHHHHHHHHHHH----HHH--hcCCHHHHHHH----HHHHHHHHHHHHhhHHHHHHHhC-ChhhH
Confidence            99999999885 567777777764321    100  01233322222    23678888888888888888764 44556


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------cccch--------hhHHHHHHHHHH-HHHHHHHHHHHhhc
Q 018940          162 VVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK--------THADL--------ENQYRWIAYSSI-FIGCCFVGIFLSRT  224 (348)
Q Consensus       162 ~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~--------~~~~~--------~~g~~~~~~i~~-~i~~~~~ll~~~~~  224 (348)
                      .+..+..+....+|..+++.++.++.......        ...+.        ..+||+++.... +..++..++.....
T Consensus       152 ~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~  231 (438)
T PRK10133        152 HFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF  231 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            66677888888888888777765544111000        00000        135666665433 33333333323334


Q ss_pred             cccccccccc-CCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhcccccchhhhHHhHHHHHHHHHH
Q 018940          225 EEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV-INDLRMGQSAKALVPAIIYICSFIV  302 (348)
Q Consensus       225 ~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl-~~~~~~~~~~~~~~~~~~~~~~i~g  302 (348)
                      ||.+.+++++ ++.+..+..+++++||.++...+..++......+...|.+.|+ ++..|+++.+.+.......++.++|
T Consensus       232 p~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG  311 (438)
T PRK10133        232 PALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIG  311 (438)
T ss_pred             CCCCccccccccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            4422111111 1112234457889999887665555555566666777899896 5678999887777767777888999


Q ss_pred             HHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhcc
Q 018940          303 SILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP  338 (348)
Q Consensus       303 ~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~~  338 (348)
                      .++.+++ ||+|+|  +++..+..+.+++.+...+.+
T Consensus       312 ~~~~g~l~~r~g~~--~~l~~~~~~~~~~~~~~~~~~  346 (438)
T PRK10133        312 RFTGTWLISRFAPH--KVLAAYALIAMALCLISAFAG  346 (438)
T ss_pred             HHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHcC
Confidence            9999998 999999  777777777666665554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.91  E-value=1.5e-21  Score=187.22  Aligned_cols=272  Identities=14%  Similarity=0.046  Sum_probs=184.8

Q ss_pred             HHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhccc-----CCchHHHHHHHHHHHHHHHHHhcCc
Q 018940           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGGC  111 (348)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~-----Grrr~~i~~~~~~~~i~~~~l~~~~  111 (348)
                      ....+....-+|.|+++.|+|.+++|++..+...  .+.+|++|+++||+     ||||+|++.+....++++..+..  
T Consensus        12 ~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~--   87 (402)
T PRK11902         12 GLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF--   87 (402)
T ss_pred             hhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh--
Confidence            3444555677899999999999999999877776  48899999999999     99999888887777777655432  


Q ss_pred             CCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018940          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (348)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~  191 (348)
                      .+    +..+.+...+.    ..+.+...+...++..++++|..+ +|||+++.+++..+..+|.++++.+...+.+   
T Consensus        88 ~~----~~~~~~~l~~~----~~~~~~~~~~~~~~~~al~~~~~~-~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~---  155 (402)
T PRK11902         88 CP----PHAALWPLAGL----AVLVAFLSASQDIVFDAYSTDVLH-PEERGAGAAVKVLGYRLAMLVSGGLALWLAD---  155 (402)
T ss_pred             cC----ccchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcC-hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh---
Confidence            22    11222212111    124556677788889999999974 6789999999998888888887665544431   


Q ss_pred             CCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC--CchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 018940          192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (348)
Q Consensus       192 ~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  269 (348)
                            ...|||..+++.+++.++..+. .+..||++.++++++  +++.++.+++++|||.++...+..++.+......
T Consensus       156 ------~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~  228 (402)
T PRK11902        156 ------RVLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFA  228 (402)
T ss_pred             ------cccCHHHHHHHHHHHHHHHHHH-HHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH
Confidence                  1248999999887776655443 456777543321111  1234456788999998877665555544433333


Q ss_pred             hHHHHHHHhhcccccchhhhHHhHHH-HHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHh
Q 018940          270 QAYLAFYVINDLRMGQSAKALVPAII-YICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAG  333 (348)
Q Consensus       270 ~~~~~~yl~~~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~  333 (348)
                      ..+.+.++.++.|++.++.+.+.... .++.+++.++.+++ ||+|+|  +....+....++..+.
T Consensus       229 ~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~--~~l~~~~~~~~l~~l~  292 (402)
T PRK11902        229 GSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY--RSLMLFGVLQAVSNLG  292 (402)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHH
Confidence            34556677777898887666554332 34567888889997 999988  6666666555555433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.91  E-value=1.8e-21  Score=188.64  Aligned_cols=314  Identities=16%  Similarity=0.102  Sum_probs=216.7

Q ss_pred             CchHhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhc----ccCCchHHHHHHH
Q 018940           22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGS   97 (348)
Q Consensus        22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~D----r~Grrr~~i~~~~   97 (348)
                      +.++.+.-+...++..+.+.+..+++++|+++.|+++.+.+.+..+..+.+.+.+|+.|+++|    |+|||||+++.+.
T Consensus         2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~   81 (477)
T TIGR01301         2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA   81 (477)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH
Confidence            567888888889999999999999999999888999999999999999999999999999999    5999999988777


Q ss_pred             HHHHHHHHHHhcCcCCCc---ccC---cccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccc-hhHHHHHHH
Q 018940           98 VLVAVSFSSVFGGCMPCR---ILS---TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSR-VVLTSCRNA  170 (348)
Q Consensus        98 ~~~~i~~~~l~~~~~~~~---~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R-~~~~~~~~~  170 (348)
                      +..++++.++.+  .+..   +..   ..+..+....+.+...+.+++.+..+.|+.|+++|++++++|| +.+.++.+.
T Consensus        82 ~~~~~~l~ll~~--~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~  159 (477)
T TIGR01301        82 ALVAFAVILIGF--AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF  159 (477)
T ss_pred             HHHHHHHHHHHh--CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence            777776654432  1110   000   0011111122222223566788888999999999999765444 578888888


Q ss_pred             HHHHHHHHHHHHHHHH--HHhc---cCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc---------cCC
Q 018940          171 FTMVANLSLYAIAFIV--FSVS---TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---------RGN  236 (348)
Q Consensus       171 ~~~ig~~~~~~~~~~~--~~~~---~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~---------~~~  236 (348)
                      +.++|+++++.+++..  ...+   ..+..+....+.++.|++.+++.++..++..+.+||++...++         .++
T Consensus       160 ~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~  239 (477)
T TIGR01301       160 FMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSK  239 (477)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccc
Confidence            8899988887765432  1111   1100001123789999998888888889999999996431110         011


Q ss_pred             chhHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-ccccch------h----hhHHhHHHHHHHH
Q 018940          237 SHARISWAYWFKK-----ILYYQVALVYMLTRLVVNVSQAYLAFYVIND-LRMGQS------A----KALVPAIIYICSF  300 (348)
Q Consensus       237 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~-~~~~~~------~----~~~~~~~~~~~~i  300 (348)
                      .+.+..+++++++     |.++++++.++++++++..+..|...|+.++ ++-++.      +    ......+..+.+.
T Consensus       240 ~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~  319 (477)
T TIGR01301       240 HGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG  319 (477)
T ss_pred             cchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            1111223333332     4578899999999999999999999888653 332211      1    1233333445556


Q ss_pred             HHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhcc
Q 018940          301 IVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP  338 (348)
Q Consensus       301 ~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~~  338 (348)
                      +.+++.+++ +|+|+| |+.+..+..+.+++.....+..
T Consensus       320 i~s~~l~~l~~~~g~~-k~~~~~s~~~~~~~l~~~~~i~  357 (477)
T TIGR01301       320 ITSIGMEKLCRGWGAG-KRLWGIVNIILAICLAATVLVT  357 (477)
T ss_pred             HHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHH
Confidence            777788887 999864 3778899888888888887653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.91  E-value=2.7e-21  Score=184.69  Aligned_cols=268  Identities=13%  Similarity=0.093  Sum_probs=186.6

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc
Q 018940           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~  121 (348)
                      ...+.+|.+.++.|.|+.+.|++.+...+...+++|+.|+++||+||||.+ +.+.+..+++......  .       .+
T Consensus        21 ~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l-~~~~~~~~i~~~~~~~--~-------~~   90 (392)
T PRK10473         21 MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVA-IPGAALFIIASLLCSL--A-------ET   90 (392)
T ss_pred             HHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHH-HHHHHHHHHHHHHHHH--h-------Cc
Confidence            334667777777799999999999999999999999999999999998765 4676666666654331  1       12


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhH
Q 018940          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (348)
Q Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g  201 (348)
                      .......+    .+.+.+.+.......+++.|..+ +++|++..++.+....++..+++.+.+.+.          +..+
T Consensus        91 ~~~~~~~~----~l~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~----------~~~g  155 (392)
T PRK10473         91 SSLFLAGR----FLQGIGAGCCYVVAFAILRDTLD-DRRRAKVLSLLNGITCIIPVLAPVLGHLIM----------LKFP  155 (392)
T ss_pred             HHHHHHHH----HHHHhhhhHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCcC
Confidence            22222222    35666666666667788888774 678999999988887777666554433322          2357


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Q 018940          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDL  281 (348)
Q Consensus       202 ~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~  281 (348)
                      |++.+++.+++..+..++.....||++.++++ ++.+.++..++.+|||+++...+...+..........+.|.|++++.
T Consensus       156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (392)
T PRK10473        156 WQSLFYTMAAMGILVLLLSLFILKETRPARAP-AASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQM  234 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCCCCCcccC-CccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHc
Confidence            99999988888877777777777875433221 12222334467788888766544444443444445567788888888


Q ss_pred             cccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          282 RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      |++..+.+.......++++++.++.+++ ||+|+|  +.+..+..+..++.+.+.+.
T Consensus       235 g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~--~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        235 GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR--TLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHH
Confidence            9887766655566667888888888987 999999  88888887777777665554

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.91  E-value=1.2e-21  Score=185.23  Aligned_cols=272  Identities=12%  Similarity=-0.010  Sum_probs=173.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHh-hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCc
Q 018940           33 HMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (348)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~  111 (348)
                      .+..........++++.|+++ .|.|+.++|++.+...+...+.+|+.|+++||+||||++++.+.+..+++......  
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--   83 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW--   83 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh--
Confidence            444555666778999999876 49999999999999999999999999999999999998765554444444332211  


Q ss_pred             CCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 018940          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVL--TSCRNAFTMVANLSLYAIAFIVFSV  189 (348)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~--~~~~~~~~~ig~~~~~~~~~~~~~~  189 (348)
                             ..+.....+..    .+.+.+.+...+...++..+..+ +++|.+.  .+....+.++|..+++.+.+.+.  
T Consensus        84 -------~~~~~~l~~~~----~~~g~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~--  149 (375)
T TIGR00899        84 -------NRNYFLLLVLG----VLLSSFASTANPQLFALAREHAD-RTGREAVMFSSVMRAQISLAWVIGPPLAFWLA--  149 (375)
T ss_pred             -------cchHHHHHHHH----HHHHhhhhhhHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH--
Confidence                   11333222222    23344444444455566666653 3445432  45555666677666554433332  


Q ss_pred             ccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 018940          190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (348)
Q Consensus       190 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  269 (348)
                              +..+||+.+++.+++.++..++.++..||+++++++++   .+++.++.+++|+++.+....++........
T Consensus       150 --------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T TIGR00899       150 --------LGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL---TRLEVRGLLASRDTRLLFVACTLMWGCNILY  218 (375)
T ss_pred             --------HhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc---CcchhhhhhcCcchHHHHHHHHHHHHHHHHH
Confidence                    24589999998888777777766666787543222111   1223445677887766554444444444555


Q ss_pred             hHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHh
Q 018940          270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAG  333 (348)
Q Consensus       270 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~  333 (348)
                      ..++|.|++++.|.+..+.+..........+++.++.+++ ||+|+|  +.+..+.....+....
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~--~~~~~~~~~~~~~~~~  281 (375)
T TIGR00899       219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR--RLMLLAALAGVAFYTG  281 (375)
T ss_pred             HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch--hHHHHHHHHHHHHHHH
Confidence            6788999988888887766655444444556677788887 999998  7766666555544433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.91  E-value=5e-21  Score=187.71  Aligned_cols=257  Identities=10%  Similarity=0.000  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc
Q 018940           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~  121 (348)
                      ...++++.+.++.|+|..+.|++.+...+...+++++.|+++||+|||+.+. .+.+..+++......         ..+
T Consensus        54 ~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~-~~~~~~~~~~~~~~~---------~~s  123 (476)
T PLN00028         54 AAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSA-FLLMLTAPAVFCMSL---------VSS  123 (476)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHHHH---------hcC
Confidence            4445566666667999999999999999999999999999999999998754 565565555542211         112


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhH
Q 018940          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (348)
Q Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g  201 (348)
                      .....+.+    .+.|++.+.. .+...++.+..+ +++|+++.++.+.+.++|..++..+.+.+...+.... .+...|
T Consensus       124 ~~~l~~~r----~l~G~~~~~~-~~~~~~i~~~~~-~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~-~~~~~g  196 (476)
T PLN00028        124 ATGFIAVR----FFIGFSLATF-VSCQYWMSTMFN-GKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG-APSFTA  196 (476)
T ss_pred             HHHHHHHH----HHHHHHHHhh-HHHHHHHHHhcC-hhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccchhh
Confidence            22222222    2455555443 334456777774 5789999999887777887776666544333221100 011358


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccc--c-c-c---CCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 018940          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--G-L-R---GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA  274 (348)
Q Consensus       202 ~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~--~-~-~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  274 (348)
                      ||+.+++.+++.++..++.++..++++...  + + +   ++++..+.+++.+++++++.+.+.+++..........++|
T Consensus       197 Wr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  276 (476)
T PLN00028        197 WRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIA  276 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHH
Confidence            999999988888777666655544422211  0 0 0   1112223456677888877766666555555566777899


Q ss_pred             HHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhh
Q 018940          275 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQR  315 (348)
Q Consensus       275 ~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r  315 (348)
                      .|+.++.|++..+.+.+..+..++++++.++.+++ ||++||
T Consensus       277 ~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        277 EYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            99988889988777777777778899999999998 999976

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.91  E-value=3e-21  Score=183.10  Aligned_cols=249  Identities=9%  Similarity=-0.011  Sum_probs=169.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCc
Q 018940           36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (348)
Q Consensus        36 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~  115 (348)
                      +...+..+.+.+|...+|.|+|+.+.|++.+...+..++++++.|+++||+|||+.. ... ....+.......  .+  
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~-~~~-~~~~~~~~~~~~--~~--   76 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFL-FGS-LATFAAAAGRLL--DP--   76 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH-HHH-HHHHHHHHHHHH--Hh--
Confidence            445555666778888778899999999999999999999999999999999988753 333 333322221111  01  


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 018940          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (348)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  195 (348)
                          .+.....+.+    .+.|++.+.. .+..+..+|..+ +|||+++.++.+.+..+|..+++.+.+++.        
T Consensus        77 ----~~~~~l~~~R----~l~G~g~~~~-~~~~~~~~~~~~-~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~--------  138 (368)
T TIGR00903        77 ----FNYEWLLACQ----LLAALGQPFL-LNAFAPAASQIR-EERRDLVISLLSFAMYLGIIFALAAGLKIY--------  138 (368)
T ss_pred             ----ccHHHHHHHH----HHHHhHhHHH-HHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence                1333333333    3566666643 344455577775 689999999999999999988876655543        


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCC-chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 018940          196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN-SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA  274 (348)
Q Consensus       196 ~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  274 (348)
                        +..|||+.+++.++++++..++.++.+||++.+++++.+ ++..+++++++|||+++.+.+.+++.....++...|+|
T Consensus       139 --~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp  216 (368)
T TIGR00903       139 --TAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLE  216 (368)
T ss_pred             --HccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              246899999998888888888888888886432221111 11123578899999999888888888888999999999


Q ss_pred             HHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhh
Q 018940          275 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQR  315 (348)
Q Consensus       275 ~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r  315 (348)
                      +|+++ .|++.+ .+....+..+.+.++   .+++ ||..||
T Consensus       217 ~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~  253 (368)
T TIGR00903       217 AALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARA  253 (368)
T ss_pred             HHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhh
Confidence            99976 567653 333333333333333   3555 666543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.91  E-value=5e-21  Score=183.32  Aligned_cols=259  Identities=13%  Similarity=0.010  Sum_probs=174.6

Q ss_pred             HhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHH
Q 018940           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (348)
Q Consensus        25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~  104 (348)
                      ....-.++.+..........+.+|++.++.|.|+.+.|+..++..+...+++|+.|+++||+||||.++ .+.+..+++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~-~~~~~~~~~~   99 (394)
T PRK10213         21 AVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVI-LFAVLLTLSC   99 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHH-HHHHHHHHHH
Confidence            334444444444444445556778877778999999999999999999999999999999999998754 5666666665


Q ss_pred             HHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 018940          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (348)
Q Consensus       105 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~  184 (348)
                      .....         ..+.+...+.+    .+.+++.+...+...+++.|..+ +|+|+++.+....+.++|..+++.+.+
T Consensus       100 ~~~~~---------~~~~~~l~~~r----~l~G~~~g~~~~~~~~~i~~~~~-~~~~~~a~~~~~~~~~~g~~ig~~l~~  165 (394)
T PRK10213        100 LLVSF---------ANSFSLLLIGR----ACLGLALGGFWAMSASLTMRLVP-PRTVPKALSVIFGAVSIALVIAAPLGS  165 (394)
T ss_pred             HHHHH---------HChHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHcC-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43211         12333333332    36677777777777888888884 678999999988888888777665544


Q ss_pred             HHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018940          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRL  264 (348)
Q Consensus       185 ~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  264 (348)
                      .+.          +..+||+.+.+.+++.+++.++.....||++.+  +   ++.++..++.+|||.++...+..++...
T Consensus       166 ~l~----------~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~--~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~  230 (394)
T PRK10213        166 FLG----------ELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE--P---SHQKQNTFRLLQRPGVMAGMIAIFMSFA  230 (394)
T ss_pred             HHH----------hhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc--c---ccchhHHHHHhcCHHHHHHHHHHHHHHH
Confidence            332          245899999887776666555544455663211  1   1112234577889987776555555545


Q ss_pred             HHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhh
Q 018940          265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTG  313 (348)
Q Consensus       265 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g  313 (348)
                      ......++++.++.++.|++.++.+.......++++++.++.+++ ||.+
T Consensus       231 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~  280 (394)
T PRK10213        231 GQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV  280 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            555566677555556678887766665566667788888888887 7743

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.91  E-value=1.8e-21  Score=184.56  Aligned_cols=264  Identities=12%  Similarity=0.054  Sum_probs=189.0

Q ss_pred             HHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCc
Q 018940           40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (348)
Q Consensus        40 ~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~  119 (348)
                      ..+..+.+|.+.++.|+|+.++|++.++..+..++++++.|+++||+||||.+ ..+....++.......  .       
T Consensus         7 ~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~i~~~~~~~--~-------   76 (377)
T PRK11102          7 IDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVI-LGGTLVFALAAVACAL--A-------   76 (377)
T ss_pred             HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHH-HHHHHHHHHHHHHHHH--H-------
Confidence            34556888888888899999999999999999999999999999999998764 5566666666543321  1       


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchh
Q 018940          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE  199 (348)
Q Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~  199 (348)
                      .+.....+.    ..+.+++.+...++..+++.+..+ +|+|++..++.+.+..+|..+++.+.+.+.          +.
T Consensus        77 ~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----------~~  141 (377)
T PRK11102         77 QTIDQLIYM----RFLHGLAAAAASVVINALMRDMFP-KEEFSRMMSFVTLVMTIAPLLAPIIGGWLL----------VW  141 (377)
T ss_pred             ccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH
Confidence            122222222    235677777777788888999874 678999999998888888777665544333          23


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC--CchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 018940          200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV  277 (348)
Q Consensus       200 ~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl  277 (348)
                      .+|++.+.+.+++.++..++..+..||+++++++++  .++..+.+++.+|||+++...+...+..........+.|.++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (377)
T PRK11102        142 FSWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVY  221 (377)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            579999888877777776666667777533222111  112234566788898877666665555566666677788888


Q ss_pred             hhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHH
Q 018940          278 INDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC  330 (348)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~  330 (348)
                      .+..|.+.++.+.......++.+++.++.+++ ||+|+|  +.+..+..+..+.
T Consensus       222 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~--~~~~~~~~~~~~~  273 (377)
T PRK11102        222 IELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL--NMLRFGLWIQFIM  273 (377)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHH
Confidence            88889888777766666777888888889987 999999  7777776554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.91  E-value=1.6e-21  Score=183.52  Aligned_cols=268  Identities=12%  Similarity=-0.001  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc
Q 018940           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~  121 (348)
                      .+..++|...++.|+|+.++|++.++..+..++++|+.|+++||+||||.++ .+..+.+++......  .       .+
T Consensus        21 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~-~~~~~~~~~~~~~~~--~-------~~   90 (377)
T TIGR00890        21 TWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAM-LGGILYGLGFTFYAI--A-------DS   90 (377)
T ss_pred             hhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhH-HhHHHHHHHHHHHHH--H-------HH
Confidence            3345555555556999999999999999999999999999999999999865 566666666543221  1       12


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhH
Q 018940          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (348)
Q Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g  201 (348)
                      .....+.+    .+.+++.+.........+.+..  +|+|+++.++...+..+|..+++    |+...+.      +..+
T Consensus        91 ~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~------~~~~  154 (377)
T TIGR00890        91 LAALYLTY----GLASAGVGIAYGIALNTAVKWF--PDKRGLASGIIIGGYGLGSFILS----PLITSVI------NLEG  154 (377)
T ss_pred             HHHHHHHH----HHHhHHHHHHHHhHHHHHHHHc--CcccHHHHHHHHHhcchhHhHHH----HHHHHHH------hccc
Confidence            33222222    2455555554444444555554  36799999988888777766543    3333222      2458


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccc--cCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 018940          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIN  279 (348)
Q Consensus       202 ~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~  279 (348)
                      ||+.+++.+++.++..++.++..+|++.++++  ++.++.+...++.+|||+++...+..++..........+++.|.++
T Consensus       155 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (377)
T TIGR00890       155 VPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS  234 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999988888877777777777665432211  1111222345678888887766555555544444455667777544


Q ss_pred             cccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhcc
Q 018940          280 DLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP  338 (348)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~~  338 (348)
                       .+.+..+.+....+..+..+++.++.+++ ||+|||  +.+..+..+.+++.+...+.+
T Consensus       235 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~~  291 (377)
T TIGR00890       235 -LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ--KTMSIVFGISAVGMAAMLFIP  291 (377)
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHcc
Confidence             67766555555566677888899999998 999999  888888888888777666554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.91  E-value=7.1e-21  Score=184.37  Aligned_cols=280  Identities=11%  Similarity=0.120  Sum_probs=173.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhh----CCChhH---HHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHH
Q 018940           31 SGHMLNDITAACWFTYLLLFLTDI----GLSPRG---AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (348)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~~~~~~----g~s~~~---~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~  103 (348)
                      ++.+. +..+....++..+++.+.    +.+..+   .+.+.+...+...++++++|+++||+||||.+ ..+....+++
T Consensus        29 ~~~~~-~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l-~~~~~~~~~~  106 (432)
T PRK10406         29 SGNLV-EWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSM-LISVCMMCFG  106 (432)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHHH
Confidence            34443 344444456666666553    355554   44556666677779999999999999999985 4566666666


Q ss_pred             HHHHhcCcCCCcccCcccc-hhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Q 018940          104 FSSVFGGCMPCRILSTSTL-KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (348)
Q Consensus       104 ~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~  182 (348)
                      ......  .|.    .... ......+.+...+.|++.+...+...++++|..+ +++|++..+..+.+...|..++..+
T Consensus       107 ~~~~~~--~~~----~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p-~~~rg~~~~~~~~~~~~G~~~~~~~  179 (432)
T PRK10406        107 SLVIAC--LPG----YETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAV-EGRKGFYASFQYVTLIGGQLLALLV  179 (432)
T ss_pred             HHHHhh--cCC----chhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCC-CCcccHHHHHHHHHHHHHHHHHHHH
Confidence            543321  231    0000 0111223333456778888777778889999885 5789999888887777777766555


Q ss_pred             HHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHH-
Q 018940          183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML-  261 (348)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-  261 (348)
                      ...+...+.+.  +....|||+.|++.++++++.. +.....||++..+++  +.+.+.++++++|||+.+...+...+ 
T Consensus       180 ~~~~~~~~~~~--~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~  254 (432)
T PRK10406        180 VVVLQQTLEDA--ELREWGWRIPFALGAVLAVVAL-WLRRQLDETSQQETR--ALKEAGSLKGLWRNRRAFIMVLGFTAA  254 (432)
T ss_pred             HHHHHHhCCHH--HHhccchHHHHHHHHHHHHHHH-HHHhcCCCCchHHHh--hhcccccHHHHHhhHHHHHHHHHHHHH
Confidence            33332222110  0014689999988777666543 333445664322111  11112346788899887665544433 


Q ss_pred             HHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHH
Q 018940          262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVL  326 (348)
Q Consensus       262 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l  326 (348)
                      .+...+...+|+|.|+.+..|.+..+.+....+..+...++.++.+++ ||+|||  +.+..+.++
T Consensus       255 ~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr--~~~~~~~~~  318 (432)
T PRK10406        255 GSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR--TSMLCFGSL  318 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch--HHHHHHHHH
Confidence            356777888999999998888887665554444455666777777887 999999  655555443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.91  E-value=4e-21  Score=189.38  Aligned_cols=287  Identities=11%  Similarity=-0.001  Sum_probs=203.8

Q ss_pred             hhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHH
Q 018940           26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (348)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~  105 (348)
                      ...-.++.+....-...++.-+|...+|+|.+..+.+++.+.+.+..++.+|+.|+++||+||||.+ +.+....+++..
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l-~~~~~~~~~~~~   86 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLL-MLGGTLFGLASL   86 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHH
Confidence            3555566666666666777778888888899999999999999999999999999999999999886 456666666654


Q ss_pred             HHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 018940          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (348)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~  185 (348)
                      ....  .       .+.....+.+    .+.|++.+...+...+.+.+...++++|++..++......+|..+++.+++.
T Consensus        87 ~~~~--a-------~~~~~li~~r----~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~  153 (495)
T PRK14995         87 AAAF--S-------PTASWLIATR----ALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGI  153 (495)
T ss_pred             HHHH--c-------CCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3321  1       2333232322    3566777766655555565655456889999999888888887776655444


Q ss_pred             HHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCc-------------------------hh-
Q 018940          186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNS-------------------------HA-  239 (348)
Q Consensus       186 ~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~-------------------------~~-  239 (348)
                      +.          +..+|||.|++...+.++..++..+..||++.+++++.+.                         +. 
T Consensus       154 l~----------~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  223 (495)
T PRK14995        154 LL----------EHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLW  223 (495)
T ss_pred             hh----------ccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchH
Confidence            33          2458999999887777777777777777743321111000                         00 


Q ss_pred             -----------------HHHH--------HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHH
Q 018940          240 -----------------RISW--------AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAI  294 (348)
Q Consensus       240 -----------------~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~  294 (348)
                                       ....        .+++|||.+....+..++......+...++|.|+++..|.++.+.+.....
T Consensus       224 ~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~  303 (495)
T PRK14995        224 VTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLP  303 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence                             0000        246777776666666666666677778899999999999998888877677


Q ss_pred             HHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhcc
Q 018940          295 IYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP  338 (348)
Q Consensus       295 ~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~~  338 (348)
                      ..++..+++++.+++ ||+|+|  +.+..|+++.+++...+.+..
T Consensus       304 ~~~~~~~~~~~~g~l~~r~g~~--~~~~~g~~~~~~~~~~l~~~~  346 (495)
T PRK14995        304 VMVASGFSGPIAGILVSRLGLR--LVATGGMALSALSFYGLAMTD  346 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHcCch--HHHHHHHHHHHHHHHHHHHhc
Confidence            778888899999997 999988  888888888888776665543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.90  E-value=7.8e-21  Score=181.12  Aligned_cols=281  Identities=14%  Similarity=0.080  Sum_probs=181.2

Q ss_pred             CCchHhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHH
Q 018940           21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV  100 (348)
Q Consensus        21 ~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~  100 (348)
                      .+++......++.+.............+.+.++.|+|+.+.|++.+...+...+++|+.|+++||+||||+++ .+.+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~-~~~~~~   87 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMV-TSIVLF   87 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHH
Confidence            3344445666666666666666666777666667999999999999999999999999999999999999865 455555


Q ss_pred             HHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHH
Q 018940          101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (348)
Q Consensus       101 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~  180 (348)
                      +++......  .       .+.....+.+    .+.|++.+.......+++.|..+ +++|+++.++.+.+..+|..+++
T Consensus        88 ~~~~~~~~~--~-------~~~~~l~~~~----~l~G~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~g~~~~~  153 (405)
T TIGR00891        88 SAGTLACGF--A-------PGYITMFIAR----LVIGIGMGGEYGSSAAYVIESWP-KHLRNKASGLLISGYAVGAVVAA  153 (405)
T ss_pred             HHHHHHHHH--h-------ccHHHHHHHH----HHHHhhhhhhhHHHHHHHHHhCC-hhhhhHHHHHHHHHHHHHHHHHH
Confidence            555543321  1       1333232222    36777777777777888889885 57899999999988888888876


Q ss_pred             HHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccc-ccCCchhHHHHHHHH------------
Q 018940          181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LRGNSHARISWAYWF------------  247 (348)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~-~~~~~~~~~~~~~~~------------  247 (348)
                      .+.+.+....        ..+||+.+.+.++..++ .++.....||++..++ +++++..++..++..            
T Consensus       154 ~l~~~l~~~~--------~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (405)
T TIGR00891       154 QVYSLVVPVW--------GDGWRALFFISILPIIF-ALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMT  224 (405)
T ss_pred             HHHHHHHHhc--------CccHHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhh
Confidence            6654443221        13599988776544443 3444455677432111 000000000000000            


Q ss_pred             -----Hh--HH----HHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhh
Q 018940          248 -----KK--IL----YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQR  315 (348)
Q Consensus       248 -----~~--~~----~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r  315 (348)
                           ++  ++    +........+.+........++|.|+.++.|++..+.+.......++.+++.++.+++ ||+|||
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~  304 (405)
T TIGR00891       225 LAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR  304 (405)
T ss_pred             hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence                 00  01    1112222333334445667789999998889988777766666778889999999998 999999


Q ss_pred             hhHHHHHHHHHH
Q 018940          316 LKAYYSAGGVLW  327 (348)
Q Consensus       316 ~k~~~~~g~~l~  327 (348)
                        +.+..+..+.
T Consensus       305 --~~~~~~~~~~  314 (405)
T TIGR00891       305 --KAYVCSLLAG  314 (405)
T ss_pred             --hhhHHHHHHH
Confidence              7776665554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.90  E-value=4.2e-21  Score=182.94  Aligned_cols=280  Identities=10%  Similarity=0.035  Sum_probs=193.5

Q ss_pred             hhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHH
Q 018940           26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (348)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~  105 (348)
                      ...+....+..........+.+|.+.+|.|.|..+.|++.+...+..++++|+.|+++||+||||.+ ..+....+++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~   83 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHIL-LFLVALCVIGNA   83 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHH-HHHHHHHHHHHH
Confidence            3455566677777777777888888777899999999999999999999999999999999998875 456666666654


Q ss_pred             HHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 018940          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (348)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~  185 (348)
                      ....  .       .+.+...+.+    .+.|++.+.......+.+.+.. ++++|++..+....+..+|..+++.+.+.
T Consensus        84 l~~~--~-------~~~~~l~~~r----~l~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  149 (382)
T PRK10091         84 MFTL--S-------SSYLMLAIGR----LVSGFPHGAFFGVGAIVLSKII-KPGKVTAAVAGMVSGMTVANLLGIPLGTY  149 (382)
T ss_pred             HHHH--h-------CcHHHHHHHH----HHHHhhhHHHHHHHHHHHHHhC-ChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence            3321  1       2333333332    3566666655555566677776 45678888887777777776665444322


Q ss_pred             HHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018940          186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLV  265 (348)
Q Consensus       186 ~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  265 (348)
                      +    .      +..+||+.+.+.+++.++..+..++..||+++++    +.+.++.+ +.+||++.+......++....
T Consensus       150 l----~------~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  214 (382)
T PRK10091        150 L----S------QEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEA----KGGLREQF-HFLRSPAPWLIFAATMFGNAG  214 (382)
T ss_pred             H----h------hhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccc----ccCHHHHH-HHhcChHHHHHHHHHHHHHHH
Confidence            2    1      2458999999888877776666666777753211    11223333 356777666554444444444


Q ss_pred             HHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       266 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      ......|++.|+.+..|.+..+.+.+.....++.+++.++.+++ ||+|+|  +....+..+.+++.+.+...
T Consensus       215 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~--~~~~~~~~~~~i~~~~~~~~  285 (382)
T PRK10091        215 VFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL--RIAAVTDFIIVLALLMLFFF  285 (382)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch--hHHHHHHHHHHHHHHHHHHH
Confidence            55556678888888889988777777677778889999999997 999998  77777777777776555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.90  E-value=8e-21  Score=186.89  Aligned_cols=280  Identities=12%  Similarity=0.059  Sum_probs=190.2

Q ss_pred             hhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhccc-----CCchHHHHHHHHHH
Q 018940           26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLV  100 (348)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~-----Grrr~~i~~~~~~~  100 (348)
                      .....+..+.......+..+.++.++++.|.|..++|.+..+....  +.++++|+++||+     ||||+|++.+.+..
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~--~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~   91 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAY--VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL   91 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence            3444444445556666777888999988899999999975444443  5899999999998     99999888777777


Q ss_pred             HHHHHHH-hcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHH
Q 018940          101 AVSFSSV-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (348)
Q Consensus       101 ~i~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~  179 (348)
                      +++...+ +.  .|     ..+.......+    .+.+++.+...++..++..|..+ +|||++..++...+..+|.+++
T Consensus        92 ~~~~~~~a~~--~~-----~~~l~~l~~~~----~l~~~~~a~~~i~~~a~~~~~~~-~~~rg~~~~i~~~g~~lG~llg  159 (491)
T PRK11010         92 LVAIAAMGFL--EP-----GTQLRWLAALA----VVIAFCSASQDIVFDAWKTDVLP-AEERGAGAAISVLGYRLAMLVS  159 (491)
T ss_pred             HHHHHHHHHc--CC-----cchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHHH
Confidence            6665433 32  12     12333222222    35667777888889999999985 6789999999999888888877


Q ss_pred             HHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC--CchhHHHHHHHHHhHHHHHHHH
Q 018940          180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVAL  257 (348)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l  257 (348)
                      +.+...+..         ...|||+.+++.+++.++..+..+ ..||++.++++++  +++..+++++.++++..+...+
T Consensus       160 ~~l~~~l~~---------~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll  229 (491)
T PRK11010        160 GGLALWLAD---------RYLGWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILL  229 (491)
T ss_pred             HHHHHHHHh---------cccCHHHHHHHHHHHHHHHHHHHH-hcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHH
Confidence            655444431         124899999988877766655444 4777543211111  1112345677787776665544


Q ss_pred             HHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHh-HHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 018940          258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVP-AIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG  331 (348)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~  331 (348)
                      ..++..........+.+.|+.++.|++.++.+... ....++.+++.++.+++ ||+|+|  +.+..+..+.+++.
T Consensus       230 ~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~--~~l~i~~~l~~l~~  303 (491)
T PRK11010        230 LIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF--RALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHH
Confidence            44555555566677888888888899888777654 34446788999999998 999988  66655555444443

>TIGR00897 2A0118 polyol permease family

Probab=99.90  E-value=6.3e-21  Score=183.02  Aligned_cols=273  Identities=14%  Similarity=0.095  Sum_probs=172.7

Q ss_pred             CCCchHh-hHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHH
Q 018940           20 PVGRWSV-LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV   98 (348)
Q Consensus        20 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~   98 (348)
                      +.++++. ....++.+...........+++++++|.|.|+.++|++.+...+...+++|+.|+++||+||||.+. .+..
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~-~~~~   86 (402)
T TIGR00897         8 KIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMM-IGLL   86 (402)
T ss_pred             HcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH-HHHH
Confidence            4555444 4445566666666666778899999888999999999999999999999999999999999999865 4555


Q ss_pred             HHHHHHHHH-hcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHH-
Q 018940           99 LVAVSFSSV-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN-  176 (348)
Q Consensus        99 ~~~i~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~-  176 (348)
                      ..+++.... ... ..     ..+.....+.+    .+.+++.+....+..+.+.+..+ +|+|++++++.+.+.++|. 
T Consensus        87 ~~~~~~~~~~~~~-~~-----~~~~~~l~~~~----~i~G~g~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~  155 (402)
T TIGR00897        87 LWCVGHAAFIVFG-LG-----HANYPLILLFY----GIRGLGYPLFAYSFLVWVVYNTK-QDNLSSAVGWFWAVYSIGIG  155 (402)
T ss_pred             HHHHHHHHHHHHh-cc-----CccHHHHHHHH----HHHHcchHHHHhHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHH
Confidence            555554321 110 00     11222222222    24566666555555666667664 6789999999888877775 


Q ss_pred             HHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccccc---CCchhHHHHHHHHHhHHHH
Q 018940          177 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR---GNSHARISWAYWFKKILYY  253 (348)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~  253 (348)
                      ..++.+.+.+...++     .....|+..+..     .+..++.++..+|++++++++   +.++.++.++.++|||+++
T Consensus       156 ~~g~~~~~~l~~~~g-----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (402)
T TIGR00897       156 VFGSYYSSYAIPAFG-----EMNTLWSALAFV-----LTGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNVL  225 (402)
T ss_pred             HHHHHHHHhcccccc-----hHHHHHHHHHHH-----HHHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhHH
Confidence            343333222221111     011124443321     122233333444432211111   1112234466788999988


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhh
Q 018940          254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQR  315 (348)
Q Consensus       254 ~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r  315 (348)
                      ...+..++.....++..+|.|.|+++ .|.+..+.+.......++++++.++.+++ ||+|+|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  287 (402)
T TIGR00897       226 LGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWM  287 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            77777777767777888899999865 78887766655555667889999999998 999988

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.90  E-value=6.4e-21  Score=182.97  Aligned_cols=284  Identities=12%  Similarity=0.034  Sum_probs=188.5

Q ss_pred             hHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHH
Q 018940           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (348)
Q Consensus        27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~  106 (348)
                      ....++.+.+.....+..+.++.+.++.|.|+.+.++..+...+...+.+++.|+++||+||||.+ ..+....+++...
T Consensus        16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l-~~~~~~~~~~~~~   94 (406)
T PRK15402         16 LCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM-LAGVAFFILTCLA   94 (406)
T ss_pred             HHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH-HHHHHHHHHHHHH
Confidence            444455555555555666677777777799999999999999999999999999999999999875 4566666665543


Q ss_pred             HhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (348)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~  186 (348)
                      ...  .       .+.......    ..+.+++.+.......+.+.|..+ +++|.+..+..+....++..+++.+.+.+
T Consensus        95 ~~~--~-------~~~~~l~~~----~~l~G~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l  160 (406)
T PRK15402         95 ILL--A-------QSIEQFTLL----RFLQGIGLCFIGAVGYAAIQESFE-EADAIKITALMANVALLAPLLGPLVGAAL  160 (406)
T ss_pred             HHH--H-------ccHHHHHHH----HHHHHhHhhhHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            321  1       122222222    234556555555555667777764 56777777776666555555544443322


Q ss_pred             HHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-CCchhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018940          187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLV  265 (348)
Q Consensus       187 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  265 (348)
                      .          +..+||+.+++.+++.++..+..++..||++.+++++ +.++.++.++++++||+++...+...+....
T Consensus       161 ~----------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (406)
T PRK15402        161 I----------HVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLP  230 (406)
T ss_pred             H----------HccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            2          1357999998887777766665656667754322211 1123345667889999887766655555455


Q ss_pred             HHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       266 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      ......+.|.|+.+..|.++.+.+.......++.+++.++.+++ ||+++|  +.+..+.++.+++...+.+.
T Consensus       231 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~--~~~~~~~~~~~~g~~~~~~~  301 (406)
T PRK15402        231 LLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLR--SLIRMGLWPMVAGLLLAALA  301 (406)
T ss_pred             HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHH
Confidence            55566678989888888887665554444456778888888888 999998  88888877777776665543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.90  E-value=6.7e-21  Score=184.71  Aligned_cols=248  Identities=13%  Similarity=0.039  Sum_probs=172.2

Q ss_pred             HHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc
Q 018940           41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (348)
Q Consensus        41 ~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~  120 (348)
                      .....++|.+.++.|+|+.+.|++.+...+..++++++.|+++||+||||.+ ..+.+..+++......         ..
T Consensus        40 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~-~~~~~~~~~~~~~~~~---------~~  109 (434)
T PRK11663         40 KSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM-GIGLIATGIINILFGF---------SS  109 (434)
T ss_pred             hhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH-HHHHHHHHHHHHHHHH---------Hh
Confidence            3445677778777899999999999999999999999999999999999875 4566666665543211         11


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhh
Q 018940          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (348)
Q Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~  200 (348)
                      +.......+    .+.+++.+....+..+++.+..+ +++|++..++.+.+.++|..+++.+.+.+.          +..
T Consensus       110 ~~~~l~~~~----~l~g~~~g~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~----------~~~  174 (434)
T PRK11663        110 SLWAFALLW----VLNAFFQGWGWPVCAKLLTAWYS-RTERGGWWAIWNTAHNVGGALIPLVVGAIA----------LHY  174 (434)
T ss_pred             HHHHHHHHH----HHHHHHHHccchHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------Hcc
Confidence            222222222    24455555555666778888874 578999999999998888887766554443          135


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccc--c-----c-------cC----CchhHHHHH-HHHHhHHHHHHHHHHHH
Q 018940          201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--G-----L-------RG----NSHARISWA-YWFKKILYYQVALVYML  261 (348)
Q Consensus       201 g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~--~-----~-------~~----~~~~~~~~~-~~~~~~~~~~~~l~~~~  261 (348)
                      +||+.+++.+++.++..++.++..||++.+.  +     +       ++    +.+.++.++ ..++||.++.+.+..++
T Consensus       175 gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (434)
T PRK11663        175 GWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVL  254 (434)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHH
Confidence            8999998887777666655555666643211  0     0       00    001112222 25667877776666666


Q ss_pred             HHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhh
Q 018940          262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTG  313 (348)
Q Consensus       262 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g  313 (348)
                      ..........|+|.|+.++.|++..+.+....+..++++++.++.+++ ||+.
T Consensus       255 ~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~  307 (434)
T PRK11663        255 VYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLF  307 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence            666667788899999988889988776666666778889999999998 9984

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.90  E-value=1.5e-20  Score=181.17  Aligned_cols=259  Identities=10%  Similarity=-0.024  Sum_probs=176.6

Q ss_pred             HHHHHHHHHHHHHHHHh-hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCc
Q 018940           37 DITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (348)
Q Consensus        37 ~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~  115 (348)
                      +..+-....+..+.+++ .|+|..+.|++.++..+..++++++.|+++||+||||.+ ..+.+...+.......  .   
T Consensus        20 ~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~-~~~~~~~~~~~~~~~~--~---   93 (412)
T TIGR02332        20 SFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWI-AGIMVLWGIASTATMF--A---   93 (412)
T ss_pred             HHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHH-HHHHHHHHHHHHHHHH--h---
Confidence            33333333444445544 599999999999999999999999999999999999875 4566666665543321  1   


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 018940          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (348)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  195 (348)
                          .+.......+    .+.|++.+...+...+++.|..+ +++|++..++.+.+..+|..+++.+.+.+...-..   
T Consensus        94 ----~~~~~l~~~r----~l~G~~~~~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~---  161 (412)
T TIGR02332        94 ----TGPESLYLLR----ILVGIAEAGFLPGILLYLTFWFP-AYFRARANALFMIAMPVTMALGLILSGYILALDGL---  161 (412)
T ss_pred             ----cCHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---
Confidence                1333233333    36677777766666677888874 57899999999988888888877765554421000   


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccc-----cc----------------CC----c---hhHHHHHHHH
Q 018940          196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-----LR----------------GN----S---HARISWAYWF  247 (348)
Q Consensus       196 ~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~-----~~----------------~~----~---~~~~~~~~~~  247 (348)
                       .+..|||+.+++.++++++..++.++++||++.+++     ++                ++    +   ..+..+++++
T Consensus       162 -~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (412)
T TIGR02332       162 -MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF  240 (412)
T ss_pred             -CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc
Confidence             013589999999888887777777777887542210     00                00    0   0011233333


Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-ccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhh
Q 018940          248 KKILYYQVALVYMLTRLVVNVSQAYLAFYVIND-LRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQR  315 (348)
Q Consensus       248 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~-~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r  315 (348)
                       +|.++...+.+++.....++..+|+|.|+++. .+.+..+.+.+.....++++++.++.+++ ||+++|
T Consensus       241 -~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r  309 (412)
T TIGR02332       241 -TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER  309 (412)
T ss_pred             -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc
Confidence             46666677777777778888899999999873 46665555666666778899999999998 999977

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.89  E-value=5.3e-22  Score=194.17  Aligned_cols=263  Identities=12%  Similarity=0.029  Sum_probs=178.2

Q ss_pred             HHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchh
Q 018940           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (348)
Q Consensus        45 ~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~  124 (348)
                      ..+|...+|+|+|+.+.|++.+.+.+..++++|+.|+++||+||||.+. .+.+..++.....-.  .++..  ..+...
T Consensus        50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~-~~~~~~~~~~~~~~~--~~~~~--~~~~~~  124 (467)
T PRK09556         50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLP-FLLILSAICMLGFGA--SLGSG--SVSLGL  124 (467)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHH-HHHHHHHHHHHHHHH--HHhcc--cchHHH
Confidence            4456666667999999999999999999999999999999999998753 444444444322110  11110  123332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHH
Q 018940          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (348)
Q Consensus       125 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  204 (348)
                      ..+.+    .+.|++.+...++..+++++..+ +++|+++.++.+.+.++|.++++.+...+.....       ..+|+.
T Consensus       125 l~~~r----~l~G~~~~~~~~~~~~~i~~~~~-~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~-------~~~~~~  192 (467)
T PRK09556        125 MIALW----ALSGFFQSTGGPCSYSTITRWTP-RRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF-------DGHVIG  192 (467)
T ss_pred             HHHHH----HHHHHHHhccchHHHHHHHHHcC-ccceeeeEEeeecccchhhhHHHHHHHHHHHhhc-------cCcchh
Confidence            32222    35667777666677788888885 5789999999888888888887665433332211       125888


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccc-----c-----c---cC----Cc--hhHHHH-HHHHHhHHHHHHHHHHHHHHH
Q 018940          205 IAYSSIFIGCCFVGIFLSRTEEPRLKM-----G-----L---RG----NS--HARISW-AYWFKKILYYQVALVYMLTRL  264 (348)
Q Consensus       205 ~~~i~~~i~~~~~ll~~~~~~e~~~~~-----~-----~---~~----~~--~~~~~~-~~~~~~~~~~~~~l~~~~~~~  264 (348)
                      .+.+.++++++..++.++..+|++++.     +     +   ++    ++  +.++.+ ++.+|||.++...+..++...
T Consensus       193 ~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  272 (467)
T PRK09556        193 MFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYI  272 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence            887777777777666666655432110     0     0   00    00  111222 337889998888888877777


Q ss_pred             HHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHH
Q 018940          265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVL  326 (348)
Q Consensus       265 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l  326 (348)
                      ..++...|.|.|+++..|++..+.+.......++++++.++.+++ ||+|+|  +....+..+
T Consensus       273 ~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r--~~~~~~~~~  333 (467)
T PRK09556        273 VRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR--RALVACIAL  333 (467)
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--chHHHHHHH
Confidence            777888999999999999988777766666777889999999998 999988  554444333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.89  E-value=1.9e-20  Score=179.27  Aligned_cols=294  Identities=10%  Similarity=0.025  Sum_probs=184.2

Q ss_pred             CCCCCCCCchHhh-HHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhH-----HHHHHHHHHHHHHhhhhhhHhhhcccCC
Q 018940           15 DSFTQPVGRWSVL-YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG-----AAAVMLSGQIADGFATIFIGELIDRFGH   88 (348)
Q Consensus        15 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~-----~g~i~~~~~i~~~i~~p~~G~l~Dr~Gr   88 (348)
                      +++.++.++++.+ ...++.+..........+++|.|+++.|++..+     .|.+.++..+.+.+.+|+.|+++||+||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~   83 (408)
T PRK09874          4 CENDTPINWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGR   83 (408)
T ss_pred             CcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCc
Confidence            3334555555543 334667777777778889999999888887543     5899999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHH
Q 018940           89 FKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR  168 (348)
Q Consensus        89 rr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~  168 (348)
                      ||.++ .+.+..+++......         ..+.....+.+    .+.+++.+. .....+.+.+.. ++++|++..+..
T Consensus        84 r~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~----~~~g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~  147 (408)
T PRK09874         84 KIMLL-RSALGMGIVMVLMGL---------AQNIWQFLILR----ALLGLLGGF-VPNANALIATQV-PRNKSGWALGTL  147 (408)
T ss_pred             HHHHH-HHHHHHHHHHHHHHH---------HhhHHHHHHHH----HHHHHhhhh-HHhHHHHHHHhc-CHhhhhHHHHHH
Confidence            98764 566666665543321         11233222222    244444333 344456666766 457889998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHH
Q 018940          169 NAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFK  248 (348)
Q Consensus       169 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~  248 (348)
                      +.+..+|..+++.+.+.+.          +..+|++.+.+.+++.++..++..+..||++.+.+++++.+.++. .+.+|
T Consensus       148 ~~~~~~g~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  216 (408)
T PRK09874        148 STGGVSGALLGPLAGGLLA----------DSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMREV-VTSLK  216 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHH----------HHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhHHHHH-HHhCc
Confidence            8877777776655544332          245799998888777777666666677775322221111222222 34566


Q ss_pred             hHHHHH-HHHHHHHHHHHHHhhhHHHHHHHhhcccccch---hhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHH
Q 018940          249 KILYYQ-VALVYMLTRLVVNVSQAYLAFYVINDLRMGQS---AKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAG  323 (348)
Q Consensus       249 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~---~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g  323 (348)
                      |++++. ......+.+........+++.|..+..+....   ..+.+..+..++++++.+..+++ ||+|||  +.+..+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~--~~~~~~  294 (408)
T PRK09874        217 NPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE--KILITA  294 (408)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--hhHHHH
Confidence            776544 33333334455556677888888875443221   12333334445666777777887 999999  877777


Q ss_pred             HHHHHHHHHhHhhc
Q 018940          324 GVLWVFCGAGILIL  337 (348)
Q Consensus       324 ~~l~~v~~~~~~~~  337 (348)
                      ..+..++.+...+.
T Consensus       295 ~~~~~~~~~~~~~~  308 (408)
T PRK09874        295 LIFSVLLLIPMSFV  308 (408)
T ss_pred             HHHHHHHHHHHHHh
Confidence            77666666544443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.89  E-value=7.2e-21  Score=179.76  Aligned_cols=246  Identities=15%  Similarity=0.095  Sum_probs=178.4

Q ss_pred             HHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchh
Q 018940           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (348)
Q Consensus        45 ~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~  124 (348)
                      ...|.+.++.|.|+.+.|++.++..+...+.+++.|+++||+||||.++ .+.+..+++......  .       .+...
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~-~~~~~~~~~~~~~~~--~-------~~~~~   84 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLA-VFIVIWGVFTGLQAF--A-------GAYVS   84 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeH-HHHHHHHHHHHHHHH--H-------cCHHH
Confidence            3344444445999999999999999999999999999999999998864 566555555543321  1       12332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHH
Q 018940          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (348)
Q Consensus       125 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  204 (348)
                      ..+.    ..+.+++.+...++..+++.|..+ +|+|++..++.+....+|..+++.+.+.+.          ...+|++
T Consensus        85 ~~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~----------~~~~~~~  149 (399)
T TIGR00893        85 LYIL----RVLLGAAEAPFFPGIILIVASWFP-ASERATAVSIFNSAQGLGGIIGGPLVGWIL----------IHFSWQW  149 (399)
T ss_pred             HHHH----HHHHHHHHHhhhhHHHHHHHHhCC-HHHHHHHHHHHHHhchHHHHHHHHHHHHHH----------HhCCchH
Confidence            2222    236777777777788889999874 678999999999888888888766554433          2457999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccccc----c-c---------------CCchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018940          205 IAYSSIFIGCCFVGIFLSRTEEPRLKMG----L-R---------------GNSHARISWAYWFKKILYYQVALVYMLTRL  264 (348)
Q Consensus       205 ~~~i~~~i~~~~~ll~~~~~~e~~~~~~----~-~---------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  264 (348)
                      .+.+.+++.++..++..+..||++.+++    + +               ++++.++..++.+|||+++...+..++...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (399)
T TIGR00893       150 AFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNI  229 (399)
T ss_pred             HHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHh
Confidence            9988877777776666666666432110    0 0               000112235678889998887777777778


Q ss_pred             HHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhh
Q 018940          265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQR  315 (348)
Q Consensus       265 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r  315 (348)
                      .......++|.|+++..|.+..+.+.......++++++.++.+++ ||++||
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  281 (399)
T TIGR00893       230 GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRR  281 (399)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            888889999999999889887777766666777888999999997 999998

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.89  E-value=5.7e-20  Score=178.99  Aligned_cols=301  Identities=13%  Similarity=0.098  Sum_probs=224.6

Q ss_pred             chHhhHHhhhhhHHHHHHH-HHHHHHHHHHHhh----CCC--------------------------hhHHHHHHHHHHHH
Q 018940           23 RWSVLYYGSGHMLNDITAA-CWFTYLLLFLTDI----GLS--------------------------PRGAAAVMLSGQIA   71 (348)
Q Consensus        23 ~~~~~~~~~g~~~~~~~~~-~~~~~l~~~~~~~----g~s--------------------------~~~~g~i~~~~~i~   71 (348)
                      .|+..+|.+.+++++.... ++..+.|+|++++    |.+                          .+..+...+++.+.
T Consensus         3 r~~i~~W~lyd~ans~f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l~   82 (477)
T PF11700_consen    3 RREIWSWALYDWANSPFATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGLL   82 (477)
T ss_pred             hhHHHHHHHhHhhcccchhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHHH
Confidence            5678999999999887554 4456778888874    211                          23457889999999


Q ss_pred             HHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 018940           72 DGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMV  151 (348)
Q Consensus        72 ~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~  151 (348)
                      .++..|+.|.++|+.|+||+++...+.+.+++...++.  ++     ..+.....+.+    ++..+++....+.++++.
T Consensus        83 ~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~--v~-----~~~~~~~~~l~----iia~v~~~~~~vfyna~L  151 (477)
T PF11700_consen   83 QALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWF--VS-----PGQWWLALVLF----IIANVGYEASNVFYNAYL  151 (477)
T ss_pred             HHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH--hC-----cchHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999988777777777665543  11     12222222222    356688888999999999


Q ss_pred             hhcccCccc-------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHH
Q 018940          152 NCITLNSTS-------------------------RVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIA  206 (348)
Q Consensus       152 ~~~~~~~~~-------------------------R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  206 (348)
                      +++++++++                         |++.++.....+++|+++...+...++......  .+.....|..+
T Consensus       152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~--~~~~~~~r~~~  229 (477)
T PF11700_consen  152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST--ASNTWAIRVAF  229 (477)
T ss_pred             HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--cccchhhhHHH
Confidence            999975443                         289999999999999888776654544332211  11245678889


Q ss_pred             HHHHHHHHHHHHHHHhhccccccccc-ccCC-------chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 018940          207 YSSIFIGCCFVGIFLSRTEEPRLKMG-LRGN-------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI  278 (348)
Q Consensus       207 ~i~~~i~~~~~ll~~~~~~e~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~  278 (348)
                      .+.++..++..+..++++||++.+++ ++.+       ++.++.+|++.|+|+..+..+.+++.+-+.++.......|..
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~  309 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYAT  309 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999754222 1111       233445667777788777888888888999999999999999


Q ss_pred             hcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhh
Q 018940          279 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI  336 (348)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~  336 (348)
                      +.+|++..+...+.++..+.+++|+++.+++ ||+|.|.|+++..+++++.+.++.-++
T Consensus       310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~  368 (477)
T PF11700_consen  310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLF  368 (477)
T ss_pred             HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999887777788889999999999998 999988788888888887555544443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.89  E-value=4.3e-20  Score=177.00  Aligned_cols=277  Identities=13%  Similarity=0.054  Sum_probs=180.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCc
Q 018940           32 GHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (348)
Q Consensus        32 g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~  111 (348)
                      ..+.............|.+.++.|.|+.+.|++.+...+...+++++.|+++||+||||.+. .+.....+.......  
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~--   99 (406)
T PRK11551         23 VALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILI-VSVALFGLFSLATAQ--   99 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH-HHHHHHHHHHHHHHH--
Confidence            34444444445556666676677999999999999999999999999999999999999865 455555554432221  


Q ss_pred             CCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018940          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (348)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~  191 (348)
                      .       .+.....+.+    .+.+++.+...+...+++.|..+ +|+|++..++.+.+..+|..+++.+...+    .
T Consensus       100 ~-------~~~~~~~~~~----~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~  163 (406)
T PRK11551        100 A-------WDFPSLLVAR----LLTGVGLGGALPNLIALTSEAVG-PRLRGTAVSLMYCGVPFGGALASVIGVLA----A  163 (406)
T ss_pred             h-------ccHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c
Confidence            1       1333232222    35677777777777888888874 57899999998888888877765443221    1


Q ss_pred             CCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC-CchhHHHHHHHHHhH---HHHHHHHHHHHHHHHHH
Q 018940          192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG-NSHARISWAYWFKKI---LYYQVALVYMLTRLVVN  267 (348)
Q Consensus       192 ~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~  267 (348)
                            +..+|++.+++.+++.++..++...+.||++.+.++++ +++.++..+..++++   ..+.+....++.....+
T Consensus       164 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (406)
T PRK11551        164 ------GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLY  237 (406)
T ss_pred             ------cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence                  24579998888776666666666666787543222111 111112223334332   22233333444445556


Q ss_pred             hhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhh
Q 018940          268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI  336 (348)
Q Consensus       268 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~  336 (348)
                      ....|+|.|+++ .|.+..+.+.......++.+++.++.+++ ||+|+|  +.+..+.+...++.+.+.+
T Consensus       238 ~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~  304 (406)
T PRK11551        238 FLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR--RVVLLIYAGILASLAALAA  304 (406)
T ss_pred             HHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHh
Confidence            677789999876 58877766666666777889999999998 999998  7766666655555544443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.89  E-value=5.7e-20  Score=177.23  Aligned_cols=306  Identities=7%  Similarity=-0.053  Sum_probs=194.3

Q ss_pred             cccCCCCCC---CCCCCCCchHhhHHhhhhhHHHHHHHHHHHHHHHHHH-hhCCChhHHHHHHHHHHHHHHhhhhhhHhh
Q 018940            7 MNYDIENDD---SFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLT-DIGLSPRGAAAVMLSGQIADGFATIFIGEL   82 (348)
Q Consensus         7 ~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l   82 (348)
                      .+.|-||.+   +.-|++-++....=.++.......+.+..+..+..-+ ++|+|++|.+++.++..+..++.+.+.|++
T Consensus        14 ~~w~pe~~~~w~~~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l   93 (462)
T PRK15034         14 RDWKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFM   93 (462)
T ss_pred             cCCCCCChHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346666652   2222333333333233333444455565555555544 469999999999999999999999999999


Q ss_pred             hcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccch
Q 018940           83 IDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRV  162 (348)
Q Consensus        83 ~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~  162 (348)
                      +||+|.||.+. .+.+..++....... ..+   ....++....+.+    .+.|++ +....+....+++..+ +++|+
T Consensus        94 ~Dr~G~R~v~~-~~~ll~~i~~~~~~~-a~~---~~~~s~~~lli~r----~l~Gig-g~~f~~~~~~vs~wfp-~~~rG  162 (462)
T PRK15034         94 VPIFGGRRWTV-FSTAILIIPCVWLGI-AVQ---NPNTPFGIFIVIA----LLCGFA-GANFASSMGNISFFFP-KAKQG  162 (462)
T ss_pred             HHHhCChHHHH-HHHHHHHHHHHHHHH-HHc---ccCCCHHHHHHHH----HHHHHH-HHhHHHHHHHHHHHCC-HhHhH
Confidence            99999998764 455555555433221 000   0012333332322    356665 4455667777888774 67899


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-----hccCCc-c--cchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 018940          163 VLTSCRNAFTMVANLSLYAIAFIVFS-----VSTAKT-H--ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR  234 (348)
Q Consensus       163 ~~~~~~~~~~~ig~~~~~~~~~~~~~-----~~~~~~-~--~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~  234 (348)
                      ++.++....+++|..+...+.++++.     .++... .  .+...+|+....++.++.++..++.++..+|++.     
T Consensus       163 ~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-----  237 (462)
T PRK15034        163 SALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-----  237 (462)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-----
Confidence            99999877778888777777655442     222110 0  0124578888888877777777777766555321     


Q ss_pred             CCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhh
Q 018940          235 GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTG  313 (348)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g  313 (348)
                      ++.+. +..++.+|||+.|.+++.+++....+.+...|+|.|+++..+-.  .......+..+...+..+++|++ ||+|
T Consensus       238 ~~~~~-~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~--~~l~~~~l~~l~~~l~rplgG~LADRiG  314 (462)
T PRK15034        238 SRASI-ADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDV--NILRLAFFGPFIGAIARSVGGAISDKFG  314 (462)
T ss_pred             cccCH-HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence            12222 34467999999999999999988888888889999988865321  11111122234556666888998 9999


Q ss_pred             hhhhHHHHHHHHHHHHHHHh
Q 018940          314 QRLKAYYSAGGVLWVFCGAG  333 (348)
Q Consensus       314 ~r~k~~~~~g~~l~~v~~~~  333 (348)
                      +|  |+..++.++.+++...
T Consensus       315 ~~--~vl~~~~i~~~i~~~~  332 (462)
T PRK15034        315 GV--RVTLINFIFMAIFSAL  332 (462)
T ss_pred             ch--HHHHHHHHHHHHHHHH
Confidence            99  8888887766666543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.89  E-value=3.7e-21  Score=179.76  Aligned_cols=278  Identities=18%  Similarity=0.176  Sum_probs=185.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHh-hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCc
Q 018940           33 HMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (348)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~  111 (348)
                      .+..........+.++.++.+ .|.|+.++|++.++..+...+.+++.|+++||+||||. +..+.+..+++......  
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~~~~~--   81 (352)
T PF07690_consen    5 FFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRV-LIIGLLLFALGSLLLAF--   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHH-HHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-EeehhhhhhhHHHHhhh--
Confidence            344455555666777745544 59999999999999999999999999999999999985 55677777777332221  


Q ss_pred             CCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018940          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (348)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~  191 (348)
                           .  .+.+..    .+...+.+++.+.......+++.|..+ +|||++..+..+....+|..+++.+++    .+.
T Consensus        82 -----~--~~~~~~----~~~~~l~g~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~----~l~  145 (352)
T PF07690_consen   82 -----A--SNFWLL----LIARFLLGIGSGFFSPASNALIADWFP-PEERGRAFGILSAGFSLGSILGPLLGG----FLI  145 (352)
T ss_dssp             -----H--CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCC-TCCHHHHHHHHHHHHHHHHHHHHHHHH----HCC
T ss_pred             -----h--hhHHHH----hhhccccccccccccccccccccccch-hhhhhhccccccchhhhhhhcccchhh----hhh
Confidence                 0  122222    222236778878888888899999885 479999999999988888877654432    222


Q ss_pred             CCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-cCCch---hH----HHHHHHHHhHHHHHHHHHHHHHH
Q 018940          192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSH---AR----ISWAYWFKKILYYQVALVYMLTR  263 (348)
Q Consensus       192 ~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~-~~~~~---~~----~~~~~~~~~~~~~~~~l~~~~~~  263 (348)
                            +..+||+.+++.+++.++..++...+.+|++.++++ +++++   .+    +.++..+++|.++......++..
T Consensus       146 ------~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (352)
T PF07690_consen  146 ------SYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFF  219 (352)
T ss_dssp             ------CHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHH
T ss_pred             ------hccccccccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHH
Confidence                  256799999988888887776544555543332221 11111   11    12567777777653444444444


Q ss_pred             HHHHhhhHHHHHHHhhccccc-chhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          264 LVVNVSQAYLAFYVINDLRMG-QSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       264 ~~~~~~~~~~~~yl~~~~~~~-~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      ........+.|.|+.+..|.+ ..+.+....+..+.++++.++.+++ ||+++|  +..........++...+.+.
T Consensus       220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~  293 (352)
T PF07690_consen  220 FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR--RRLLIAILLLILGALGLLLL  293 (352)
T ss_dssp             HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHHHHHHHH
Confidence            566778889999989999998 5666655566667777788888887 999987  55555555555555444443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.89  E-value=4.6e-20  Score=177.55  Aligned_cols=289  Identities=10%  Similarity=-0.042  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCc
Q 018940           36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (348)
Q Consensus        36 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~  115 (348)
                      ..+...+..+.+|.+.++.|+|+.+.|++.+...+...+++++.|+++||+||||.. ..+..+.+++......  .+  
T Consensus        15 ~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~-~~g~~l~~~g~~l~~~--~~--   89 (410)
T TIGR00885        15 WGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGI-LLGLFLYALGAFLFWP--AA--   89 (410)
T ss_pred             HHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-HHHHHHHHHHHHHHHH--HH--
Confidence            334445556777777666799999999999999999999999999999999999875 5677777777644321  01  


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-
Q 018940          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT-  194 (348)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~-  194 (348)
                        ...+....    .+...+.+.|.+..+.+.++++.+..+ +++|++..++.+...++|..+++.+..++........ 
T Consensus        90 --~~~~~~~~----l~~~~l~G~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~  162 (410)
T TIGR00885        90 --EIMNYTLF----LVGLFILTAGLGFLETAANPYILVMGP-ESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS  162 (410)
T ss_pred             --hhccHHHH----HHHHHHHHhhHHHHHhhhhHHHHHHCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence              01123222    222246788888888888888888764 5678888899899999999888877766653211000 


Q ss_pred             ---------------ccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHH
Q 018940          195 ---------------HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVY  259 (348)
Q Consensus       195 ---------------~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  259 (348)
                                     ...+..+||+.+.+.+++.++..++.. ..++++.+++++++++.++..++++|||+++...+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  241 (410)
T TIGR00885       163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDAKQISFSASLSRLARIRHYREGVIAQ  241 (410)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCccccccccchhhHHHHHhChhHHHHHHHH
Confidence                           000235799999888776666544432 3333322211112222334556788999987766666


Q ss_pred             HHHHHHHHhhhHHHHHHHhhcc-cccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          260 MLTRLVVNVSQAYLAFYVINDL-RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       260 ~~~~~~~~~~~~~~~~yl~~~~-~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      ++......+..+|++.|.+++. +.+....+.+.........+|.++.+++ ||+++|  +.+.++..+.++.+++..+.
T Consensus       242 f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~--~~l~i~~~~~~~~~ll~~~~  319 (410)
T TIGR00885       242 FFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH--KVLMAYAIIGMALCLGSIFA  319 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHc
Confidence            6655555567789999997643 3332222223333345667888888887 999999  88888888888877777665


Q ss_pred             cC
Q 018940          338 PM  339 (348)
Q Consensus       338 ~~  339 (348)
                      +.
T Consensus       320 ~~  321 (410)
T TIGR00885       320 GG  321 (410)
T ss_pred             CC
Confidence            54

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10504 putative transporter; Provisional

Probab=99.89  E-value=3.2e-20  Score=181.55  Aligned_cols=287  Identities=15%  Similarity=0.073  Sum_probs=196.9

Q ss_pred             HhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHH
Q 018940           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (348)
Q Consensus        25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~  104 (348)
                      ......++.+........+.+.+|.+.++.|.|+.+.|++.+...+..++++|+.|+++||+||||.++ .+....+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~-~~~~~~~~~~   89 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFF-TAIVLFTLGS   89 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHH
Confidence            444555666666666677788889998888999999999999999999999999999999999998865 4555555554


Q ss_pred             HHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 018940          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (348)
Q Consensus       105 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~  184 (348)
                      .....   .      .+.....+.    ..+.+++.+...+...+.+.+..+ +++|++..++.+...++|..+++.+.+
T Consensus        90 ~~~~~---~------~~~~~l~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~g  155 (471)
T PRK10504         90 LFCAL---S------GTLNELLLA----RVLQGVGGAMMVPVGRLTVMKIVP-REQYMAAMTFVTLPGQVGPLLGPALGG  155 (471)
T ss_pred             HHHHH---h------CCHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            33221   1      122222222    236777777776677777888774 578888888888777777777655544


Q ss_pred             HHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-c-------------------C-C-------
Q 018940          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-R-------------------G-N-------  236 (348)
Q Consensus       185 ~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~-~-------------------~-~-------  236 (348)
                      .+.          +..+||+.+.+......+..++.....||.+.++++ +                   + +       
T Consensus       156 ~l~----------~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (471)
T PRK10504        156 LLV----------EYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPL  225 (471)
T ss_pred             HHH----------hhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchH
Confidence            443          135899999887666666666655555543211110 0                   0 0       


Q ss_pred             -----------------------chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhH
Q 018940          237 -----------------------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPA  293 (348)
Q Consensus       237 -----------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~  293 (348)
                                             ++++.+ .+++|||+++...+..++.+........+.|.|++...|.++...++...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  304 (471)
T PRK10504        226 AIAGLVAVGVVALLLYLLHARNNNRALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMI  304 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence                                   000112 24788999887777777776776666778888888878888776665555


Q ss_pred             HHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhccC
Q 018940          294 IIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPM  339 (348)
Q Consensus       294 ~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~~~  339 (348)
                      ...++.+++.++.+++ ||+|||  +.+..+.++.+++..++.+.+.
T Consensus       305 ~~~~~~~~~~~~~~~l~~r~g~~--~~~~~~~~~~~~~~~~~~~~~~  349 (471)
T PRK10504        305 PMVLGSMGMKRIVVQVVNRFGYR--RVLVATTLGLALVSLLFMLVAL  349 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCch--HHHHHHHHHHHHHHHHHHhccc
Confidence            5555666676778887 999999  8888888878877776666543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.89  E-value=9.2e-21  Score=185.66  Aligned_cols=280  Identities=15%  Similarity=0.058  Sum_probs=199.4

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHh
Q 018940           29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF  108 (348)
Q Consensus        29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~  108 (348)
                      ..++.+............+|.+.++.|.|+.+.|++.+...+..+++.|+.|+++||+||||.++ .+....+++.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~   85 (485)
T TIGR00711         7 LMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFL-ISTFAFTLGSLLCG   85 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHH-HHHHHHHHHHHHHh
Confidence            34455555555566667778777778999999999999999999999999999999999998764 56666666654332


Q ss_pred             cCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~  188 (348)
                      .         ..+.....+.    ..+.|++.+...+...+++.|..+ +++|++..++.+.+..+|..+++.+.+.+. 
T Consensus        86 ~---------~~~~~~l~~~----~~~~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-  150 (485)
T TIGR00711        86 V---------APNLELMIIF----RVIQGFGGGPLIPLSFSTLLNIYP-PEKRGRAMAIWGLTVLVAPALGPTLGGWII-  150 (485)
T ss_pred             C---------cCCHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHhhhhhccHhHhc-
Confidence            1         1233322222    235677777777778888999885 678999999888888888777655543332 


Q ss_pred             hccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-----------------------CCc---hh---
Q 018940          189 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-----------------------GNS---HA---  239 (348)
Q Consensus       189 ~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~-----------------------~~~---~~---  239 (348)
                               +..+||+.+++.++++++..++..+..||++.++.++                       ++.   +.   
T Consensus       151 ---------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (485)
T TIGR00711       151 ---------ENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEI  221 (485)
T ss_pred             ---------cCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHH
Confidence                     2468999998887777777666666666643211100                       000   00   


Q ss_pred             ---------------------HHH--HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHH
Q 018940          240 ---------------------RIS--WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIY  296 (348)
Q Consensus       240 ---------------------~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~  296 (348)
                                           +++  -.+.+|||+++...+..++..........++|.|+++..|.++.+.+.......
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~  301 (485)
T TIGR00711       222 LILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVG  301 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence                                 000  024677777776666666666777777889999999999998877777666677


Q ss_pred             HHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHh
Q 018940          297 ICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGIL  335 (348)
Q Consensus       297 ~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~  335 (348)
                      ++.+++.++.+++ ||+|+|  +.+..+..+.+++...+.
T Consensus       302 ~~~~~~~~~~g~l~~r~~~~--~~~~~g~~~~~~~~~~~~  339 (485)
T TIGR00711       302 LAPMLSSPIAGRMGDKIDPR--KLVTIGLILYAVGFYWRA  339 (485)
T ss_pred             HHHHHHHHHHHHHHhhcCcH--HHHHHHHHHHHHHHHHHh
Confidence            7888999999998 999999  888888888888887666

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.89  E-value=9.4e-22  Score=182.26  Aligned_cols=271  Identities=14%  Similarity=0.014  Sum_probs=199.1

Q ss_pred             HHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchh
Q 018940           46 YLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (348)
Q Consensus        46 ~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~  124 (348)
                      +..+++.+. |+|.+|+|.+.+...+.+.+++.+.|.++||.+.|+. +..|.++.++..+++-+       +  .+.. 
T Consensus        50 ~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f-m~~gLilsai~nil~Gf-------s--~s~~-  118 (448)
T COG2271          50 LAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF-MAFGLILSAIVNILFGF-------S--PSLF-  118 (448)
T ss_pred             hccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee-ehHHHHHHHHHHHHHhh-------h--hHHH-
Confidence            334555454 7999999999999999999999999999999999875 56788888877754321       1  1222 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHH
Q 018940          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (348)
Q Consensus       125 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  204 (348)
                      .   +.++..+-+...+...+|+...+....+ ++|||+.-++.+...++|+.+.+.+...  +.+.      ...+||.
T Consensus       119 ~---~~~l~~lng~fQg~Gwpp~~~~i~~Wfs-r~eRG~~~siWn~shNiGGal~~~~~~l--a~~~------~~~~w~~  186 (448)
T COG2271         119 L---FAVLWVLNGWFQGMGWPPCARTITHWFS-RKERGTWWSIWNTSHNIGGALAPLVALL--AFFA------FHGGWRA  186 (448)
T ss_pred             H---HHHHHHHHHHHhcCCCcHHHHHHHHHcC-ccccCceEEEehhhhhcccchHHHHHHH--HHHH------hccchhH
Confidence            2   2222335667778888888889988885 6899999999999999998876554311  3322      1348999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccccc------------cc-CCch------hHH-HHHHHHHhHHHHHHHHHHHHHHH
Q 018940          205 IAYSSIFIGCCFVGIFLSRTEEPRLKMG------------LR-GNSH------ARI-SWAYWFKKILYYQVALVYMLTRL  264 (348)
Q Consensus       205 ~~~i~~~i~~~~~ll~~~~~~e~~~~~~------------~~-~~~~------~~~-~~~~~~~~~~~~~~~l~~~~~~~  264 (348)
                      .|++.++++++..++.++..+|++....            +. ++++      .++ -++.+++||..|.+++.+++...
T Consensus       187 ~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYi  266 (448)
T COG2271         187 AFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYV  266 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence            9999999999999999998888643210            00 1111      122 24678999999999999999989


Q ss_pred             HHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhh--hhhhHHHHHHHHHHHHHHHhHhhccCC
Q 018940          265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTG--QRLKAYYSAGGVLWVFCGAGILILPMN  340 (348)
Q Consensus       265 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g--~r~k~~~~~g~~l~~v~~~~~~~~~~~  340 (348)
                      ..++..-|-|.|+.|..|++...+.......-.+++.|+++.||+ ||+-  || ..+-.+.+++..++.+...+.|.+
T Consensus       267 vR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR-~p~~~i~~~~i~~~~~~~w~~~~~  344 (448)
T COG2271         267 VRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRR-GPMALIFMLLITASLVLYWLAPNG  344 (448)
T ss_pred             HHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHcCCCc
Confidence            999999999999999999998766666667788999999999998 9854  44 334444455555555554444544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.89  E-value=3.2e-20  Score=180.90  Aligned_cols=247  Identities=14%  Similarity=0.060  Sum_probs=163.3

Q ss_pred             HHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHH
Q 018940           47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET  126 (348)
Q Consensus        47 l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~  126 (348)
                      ..+++.+.|+|+.+.|++.+...+..++++|+.|+++||+||||.+ +.+.+..++.......  .+.   ...+.....
T Consensus        51 ~~p~l~~~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l-~~~~~~~~i~~~~~~~--~~~---~~~~~~~~~  124 (452)
T PRK11273         51 AMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL-PAGLILAAAVMLFMGF--VPW---ATSSIAVMF  124 (452)
T ss_pred             hhHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhH-HHHHHHHHHHHHHHHh--hhc---ccccHHHHH
Confidence            3345544499999999999999999999999999999999999875 4566666665543321  110   011222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCcccchhhHHHHH
Q 018940          127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-VSTAKTHADLENQYRWI  205 (348)
Q Consensus       127 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~  205 (348)
                      +.+    .+.+++.+....+..+.+.+..+ +++|++..++.+.+.++|+.+.+    |+.. ...      ...+||+.
T Consensus       125 ~~~----~l~gi~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~----~l~~~~~~------~~~gw~~~  189 (452)
T PRK11273        125 VLL----FLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGLPP----LLFLLGMA------WFNDWHAA  189 (452)
T ss_pred             HHH----HHHHHHHhccchHHHHHHHHhCC-hHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHH------HhccHHHH
Confidence            222    24555555555555566777764 57899999988888777754322    2221 111      13489999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccccc----cc------------c--CCchhHHHH-HHHHHhHHHHHHHHHHHHHHHHH
Q 018940          206 AYSSIFIGCCFVGIFLSRTEEPRLKM----GL------------R--GNSHARISW-AYWFKKILYYQVALVYMLTRLVV  266 (348)
Q Consensus       206 ~~i~~~i~~~~~ll~~~~~~e~~~~~----~~------------~--~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~  266 (348)
                      +++.+++.++..++..+..||++.+.    ++            +  ++.+.++.+ +..+|||.++...+..++.....
T Consensus       190 f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  269 (452)
T PRK11273        190 LYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR  269 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence            99888777777677777777643210    00            0  001112222 34678888887777766666677


Q ss_pred             HhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhh
Q 018940          267 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQ  314 (348)
Q Consensus       267 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~  314 (348)
                      +....|+|.|++++.|++..+.+.......++.+++.++.+++ ||+++
T Consensus       270 ~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~  318 (452)
T PRK11273        270 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR  318 (452)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            7788899999999888887666655566667888899999998 99954

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.88  E-value=1.3e-19  Score=173.97  Aligned_cols=274  Identities=13%  Similarity=0.023  Sum_probs=178.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhc
Q 018940           31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG  109 (348)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~  109 (348)
                      ..++......+.+.++++.|+++. |.|+.++|++.++..+...+.+|+.|+++||+||||.+ ..+....+++......
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l-~~~~~~~~~~~~~~~~   95 (400)
T PRK11646         17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMI-VTGMLMRAAGFATMAI   95 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHH-HHHHHHHHHHHHHHHH
Confidence            444555666667789999988775 99999999999999999999999999999999998875 4566666666544321


Q ss_pred             CcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018940          110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~  189 (348)
                         .      .+.+...+.    ..+.+++.+...++..+++.+..+ +|+|+++.++.+...++|..+++.+++.+.  
T Consensus        96 ---~------~~~~~l~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~--  159 (400)
T PRK11646         96 ---A------HEPWLLWLS----CILSGLGGTLFDPPRTALVIKLIR-PHQRGRFFSLLMMQDSAGAVIGALLGSWLL--  159 (400)
T ss_pred             ---h------ccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence               1      133322222    235666666677777888888875 678999999999898998888766654443  


Q ss_pred             ccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 018940          190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (348)
Q Consensus       190 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  269 (348)
                               ..+|++.+++.+++.++..++.....||++.+   +++++.++.+++.++||+++...+..+.........
T Consensus       160 ---------~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (400)
T PRK11646        160 ---------QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS---TVRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQV  227 (400)
T ss_pred             ---------HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc---ccchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence                     34799999887777666655555556653221   112233456778889998775544333332333334


Q ss_pred             hHHHHHHHhhcccccchhhhHHhHHHHHHHHHHH-HHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhh
Q 018940          270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVS-ILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI  336 (348)
Q Consensus       270 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~-~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~  336 (348)
                      ..++|.|+++..+ +..+.+....+..+....+. ++.++. ||++.+  +.+..+..+.+++...+.+
T Consensus       228 ~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~~~~~~~~l~~  293 (400)
T PRK11646        228 MLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLE--HRLMAGLLIMSLSMFPIGM  293 (400)
T ss_pred             HHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHHH
Confidence            5688999988766 44444444333333333333 333444 455555  5566676666666654443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.88  E-value=4.7e-20  Score=177.84  Aligned_cols=282  Identities=13%  Similarity=0.065  Sum_probs=175.8

Q ss_pred             hHHhhhhhHHHHHHHHHHHHHHHHH-HhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHH
Q 018940           27 LYYGSGHMLNDITAACWFTYLLLFL-TDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (348)
Q Consensus        27 ~~~~~g~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~  105 (348)
                      +...++.+......... .+..+++ ++.|+|+.+.+++.++..+...+++|+.|+++||+|||+.+ ..+.+..+++..
T Consensus        21 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l-~~~~~~~~~~~~   98 (426)
T PRK12307         21 FSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLM-MWSIVAYSVGTG   98 (426)
T ss_pred             HHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH-HHHHHHHHHHHH
Confidence            33334433333333333 4443444 45699999999999999999999999999999999998875 456666666654


Q ss_pred             HHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 018940          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (348)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~  185 (348)
                      ....  .       .+.....+.    ..+.|++.+.......+++.|..+ +|+|+++.++.+.+..+|.++++.+.+.
T Consensus        99 ~~~~--~-------~~~~~l~~~----r~l~G~g~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307         99 LSGL--A-------SGVIMLTLS----RFIVGMGMAGEYACASTYAVESWP-KHLKSKASAFLVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHH--H-------hHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHhCC-HhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence            3321  1       122322222    236677777666677778888875 6789999999888888887776544322


Q ss_pred             HHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccc---ccC---Cc----hhHHHHHHHHHhHHHHHH
Q 018940          186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG---LRG---NS----HARISWAYWFKKILYYQV  255 (348)
Q Consensus       186 ~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~---~~~---~~----~~~~~~~~~~~~~~~~~~  255 (348)
                      +    .      +..+||+.+.+.++. .+..+......||++..++   +++   ++    ..++.+++.+|+|.++..
T Consensus       165 l----~------~~~~w~~~f~i~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (426)
T PRK12307        165 F----A------EAYGWRAAFFVGLLP-VLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLT  233 (426)
T ss_pred             H----c------ccCCHHHHHHHHHHH-HHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHH
Confidence            2    2      245899998765433 2222222223344321100   000   00    012256778888876653


Q ss_pred             HHHH---HHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 018940          256 ALVY---MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG  331 (348)
Q Consensus       256 ~l~~---~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~  331 (348)
                      ....   ++.....+....++|.|+++. |.+....+....+..++.+++.++.+++ ||+|+|  +.+..+.++.++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~--~~~~~~~~~~~~~~  310 (426)
T PRK12307        234 LCVFIVLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK--KTFSIGLLMSFLFI  310 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHH
Confidence            3322   222223334567899998874 7776666655566667888999999988 999999  77777777666655


Q ss_pred             HhHhhcc
Q 018940          332 AGILILP  338 (348)
Q Consensus       332 ~~~~~~~  338 (348)
                      +.....+
T Consensus       311 ~~~~~~~  317 (426)
T PRK12307        311 FPLFRIP  317 (426)
T ss_pred             HHHHHHc
Confidence            5444433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.88  E-value=5.5e-20  Score=176.01  Aligned_cols=266  Identities=13%  Similarity=-0.003  Sum_probs=182.7

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc
Q 018940           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~  121 (348)
                      ...+.+|...+|+|+|..+.|++.+...+...+.+|+.|+++||+||||.+ ..+....+++......  .|       +
T Consensus        27 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l-~~~~~l~~~~~~~~~~--a~-------~   96 (393)
T PRK09705         27 SVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSV-AISLLLIAVGALMREL--YP-------Q   96 (393)
T ss_pred             ccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHH-HHHHHHHHHHHHHHHH--Cc-------c
Confidence            345677777777899999999999999999999999999999999999986 4677777777654321  12       3


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhH
Q 018940          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (348)
Q Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g  201 (348)
                      .....+.    ..+.|++.+...+...+.+.+..  +++|+++.+....+...|..+++.+.+.+..         ...+
T Consensus        97 ~~~ll~~----r~l~Gig~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~---------~~~~  161 (393)
T PRK09705         97 SALLLSS----ALLGGVGIGIIQAVMPSVIKRRF--QQRTPLVMGLWSAALMGGGGLGAAITPWLVQ---------HSET  161 (393)
T ss_pred             hHHHHHH----HHHHHhHHHHHhhhhhHHHHHHc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCC
Confidence            3323222    23677777777766677777765  3678999999888888888777766544432         1237


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Q 018940          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDL  281 (348)
Q Consensus       202 ~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~  281 (348)
                      ||+.+.+.++..++..+..+...+++++ ++++++.    ..++.+++|+.+.+.+...+..........|+|.|+++ .
T Consensus       162 w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~  235 (393)
T PRK09705        162 WYQTLAWWALPAVVALFAWWWQSAREVA-SSHKTTT----TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-I  235 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccCCCc----CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c
Confidence            8887766555544333322222222111 1111111    12345567777766666666667777888999999987 6


Q ss_pred             cccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhccCC
Q 018940          282 RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMN  340 (348)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~~~~  340 (348)
                      |.+..+.+.......++++++.++.+++ ||+++|  +.+..+..+.+++...+...+++
T Consensus       236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~--~~~~~~~~l~~~~~~~~~~~~~~  293 (393)
T PRK09705        236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR--KLLMLALVLQLVGFCGFIWLPLQ  293 (393)
T ss_pred             CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch--HHHHHHHHHHHHHHHHHHHccch
Confidence            8887777766677778889999999998 999988  77777877777777655544443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.88  E-value=8.2e-20  Score=174.12  Aligned_cols=277  Identities=13%  Similarity=-0.009  Sum_probs=178.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcC
Q 018940           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (348)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~  110 (348)
                      ++.+.......+..+++|.|+++.|.|..++|++.++..+...+.+|++|.++||+|||+..........++....+.. 
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~-   89 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA-   89 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH-
Confidence            3344444555677899999999999999999999999999999999999999999998543222111111111111110 


Q ss_pred             cCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018940          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~  190 (348)
                        .     .++.+...+.+.    +.+.+.+...+...++..+.   +++|++..+......++|.++++.+.+.+.   
T Consensus        90 --~-----~~~~~~l~~~~~----l~~~~~~~~~p~~~al~~~~---~~~~~~~~g~~~~~~slG~~~g~~l~g~l~---  152 (382)
T TIGR00902        90 --G-----AHNAWLLFIAIG----LFALFFSAGMPIGDALANTW---QKQFGLDYGKVRLIGSAAFIIGSALFGGLI---  152 (382)
T ss_pred             --h-----hhhHHHHHHHHH----HHHHHHccchhHHHHHHHHH---HHHcCCCccHHHHHHHHHHHHHHHHHHHHH---
Confidence              0     123332322222    34555555444455555432   356777777777777777777665544443   


Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccc-ccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 018940          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (348)
Q Consensus       191 ~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  269 (348)
                             +..|||..+.+.++.. +..++.+...|+++++++ ++++++..+.+++++|||+++...+..++.+.+....
T Consensus       153 -------~~~g~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~  224 (382)
T TIGR00902       153 -------GMFDEQNILAILTAGL-AFMLIGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAY  224 (382)
T ss_pred             -------HHcChhHHHHHHHHHH-HHHHHHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence                   2458988887665442 222333333333111111 1111122234678899999988887777777888888


Q ss_pred             hHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhh
Q 018940          270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI  336 (348)
Q Consensus       270 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~  336 (348)
                      .++.|.|++| .|.+..+.+....+..++.+++..+.+++ ||+|+|  +.+.++.+..++......+
T Consensus       225 ~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~--~~l~~~~~~~~~~~~~~~~  289 (382)
T TIGR00902       225 YGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR--DLLLISAIACVGRWAIIGA  289 (382)
T ss_pred             HHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH--HHHHHHHHHHHHHHHHHHh
Confidence            8999999977 78888777765555556667777778887 999988  8888998888888766654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.88  E-value=2e-19  Score=173.35  Aligned_cols=259  Identities=12%  Similarity=0.034  Sum_probs=170.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcC
Q 018940           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (348)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~  110 (348)
                      ++.+..........+-+|..-++.|.|..+.++..+++.+..++++++.|+++||+||||.++ .+....+++...... 
T Consensus        23 ~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~-~~~~~~~~~~~~~~~-  100 (413)
T PRK15403         23 LYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLI-TGALIFTLACAATLF-  100 (413)
T ss_pred             HHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHH-HHHHHHHHHHHHHHH-
Confidence            333333333344445555554556999999999999999999999999999999999998754 566666655543221 


Q ss_pred             cCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018940          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~  190 (348)
                              ..+.....+.+    .+.|++.+.......+.+.|..+ +++|++..++.+....+|..+++.+++.+.   
T Consensus       101 --------a~~~~~l~~~r----~l~Gi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~---  164 (413)
T PRK15403        101 --------TTSMTQFLIAR----FIQGTSICFIATVGYVTVQEAFG-QTKGIKLMAIITSIVLVAPIIGPLSGAALM---  164 (413)
T ss_pred             --------cCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence                    12333332322    34555555444444566777664 567888888887777777777655443332   


Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-CCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 018940          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (348)
Q Consensus       191 ~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  269 (348)
                             +..|||+.|++.+++.++..+..++..||++.+++++ ++++..+.+++++|||.++...+...+........
T Consensus       165 -------~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~  237 (413)
T PRK15403        165 -------HFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSW  237 (413)
T ss_pred             -------HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence                   2358999999888877776666566677753322111 11223456778899999888777766666677777


Q ss_pred             hHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhh
Q 018940          270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQ  314 (348)
Q Consensus       270 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~  314 (348)
                      ..+.|.|+++..|.++.+.+........+.++++.+.+.+ +|..+
T Consensus       238 ~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~  283 (413)
T PRK15403        238 VAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTE  283 (413)
T ss_pred             HHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            7788999999999988766655444455666666666654 44333

>PRK10054 putative transporter; Provisional

Probab=99.87  E-value=4.2e-20  Score=176.97  Aligned_cols=281  Identities=11%  Similarity=0.063  Sum_probs=178.0

Q ss_pred             hhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHH
Q 018940           26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (348)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~  104 (348)
                      ........+..........++++.|+++. |+|+.++|++.++..+...+.+|+.|+++||+||||.+ +.+....+++.
T Consensus         9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~-~~~~~~~~~~~   87 (395)
T PRK10054          9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYM-LLAITAFASGF   87 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH-HHHHHHHHHHH
Confidence            33444566666777777789999999875 99999999999999999999999999999999998875 45655555554


Q ss_pred             HHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 018940          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (348)
Q Consensus       105 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~  184 (348)
                      .....  .       .+.+...+.+    .+.+.+.+.......++.+|..+ +++|++..++.+...++|..+++.+.+
T Consensus        88 ~~~~~--~-------~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~lg~~igp~l~~  153 (395)
T PRK10054         88 IAIPL--V-------NNVTLVVLFF----ALINCAYSVFSTVLKAWFADNLS-STSKTKIFSLNYTMLNIGWTVGPPLGT  153 (395)
T ss_pred             HHHHH--H-------hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33211  1       1222221212    23444555555556777788774 578999999988888888888766544


Q ss_pred             HHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018940          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRL  264 (348)
Q Consensus       185 ~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  264 (348)
                      .+.           ..+|+..+.+.+++..+..++..+.+||++.+++ +++++ ....++.+|||+++...+..++...
T Consensus       154 ~l~-----------~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~  220 (395)
T PRK10054        154 LLV-----------MQSINLPFWLAAICSAFPLVFIQIWVQRSEKAIA-TETGS-VWSPSVLLQDKALLWFTCSGFLASF  220 (395)
T ss_pred             HHH-----------HhccCcHHHHHHHHHHHHHHHHHHHHhccccccc-cchhh-hhhhhhhccCceehHHHHHHHHHHH
Confidence            332           2368888887776666655555555655332211 11111 1223677889998877766666666


Q ss_pred             HHHhhhHHHHHHHhhcc--cccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhh
Q 018940          265 VVNVSQAYLAFYVINDL--RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI  336 (348)
Q Consensus       265 ~~~~~~~~~~~yl~~~~--~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~  336 (348)
                      .......+.+.|+.+..  +.+....+....+..+.........+.+ ||.++|  +.+..++.+..++.....+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~l~~~~~~~~~~~~~~~~  293 (395)
T PRK10054        221 VSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR--PLMTAGTLCFVIGLVGFIF  293 (395)
T ss_pred             HHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch--hHHHHHHHHHHHHHHHHHH
Confidence            66556667777775443  3333333333222222222233444554 777777  7777887777777655544

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.87  E-value=1.2e-19  Score=172.83  Aligned_cols=274  Identities=8%  Similarity=-0.019  Sum_probs=173.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCC
Q 018940           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP  113 (348)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~  113 (348)
                      ++......+..+++|.|++|.|.|+.++|++.++..+...+.+|++|+++||+|||+.......+..++.......   .
T Consensus        14 ~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~   90 (382)
T PRK11128         14 FGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWF---G   90 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH---h
Confidence            3334445677899999999999999999999999999999999999999999998532211111111111111111   0


Q ss_pred             CcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 018940          114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK  193 (348)
Q Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~  193 (348)
                           .++.+...+.    ..+.+.+.+...+...++..+.   +++|++..+.....+++|..+++.+++.+.      
T Consensus        91 -----~~~~~~l~i~----~~l~g~~~~~~~~~~~a~~~~~---~~~~~~a~~~~~~~~~lg~~igp~lgg~l~------  152 (382)
T PRK11128         91 -----AHSFWLLFVA----IGLFNLFFSPLVPLTDALANTW---QKQIGLDYGKVRLWGSIAFVIGSALTGKLV------  152 (382)
T ss_pred             -----cccHHHHHHH----HHHHHHHHcccccHHHHHHHHH---HhhccCCcchHHHHHHHHHHHHHHHHHHHH------
Confidence                 1233322222    1245555555555555666554   345676666666676777776655544443      


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-cCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHH
Q 018940          194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY  272 (348)
Q Consensus       194 ~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  272 (348)
                          +..|||..+++.++..++. .+..+..||+++++++ +++++.++.+++++|||.++...+..++.+.......++
T Consensus       153 ----~~~g~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~  227 (382)
T PRK11128        153 ----SWFGEQAILWILTAGVASM-LLGQLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGF  227 (382)
T ss_pred             ----HHcChhHHHHHHHHHHHHH-HHHHHccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHH
Confidence                2458998887766544333 3333344553222111 111112346788999999887777666666667777888


Q ss_pred             HHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhh
Q 018940          273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI  336 (348)
Q Consensus       273 ~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~  336 (348)
                      +|.|++| .|.+..+.+....+..++.++..++.+++ ||+|+|  +.+..+++..+++.+.+.+
T Consensus       228 ~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~--~~l~~~~~~~~~~~~~~~~  289 (382)
T PRK11128        228 SAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR--DLLLLSAICGVVRWGLMGS  289 (382)
T ss_pred             HHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHh
Confidence            8999865 68887666665555556667777778887 999988  8788888877777655543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.87  E-value=3.4e-19  Score=175.39  Aligned_cols=281  Identities=14%  Similarity=0.136  Sum_probs=174.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHh-h--CCChh--HHHH--HHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHH
Q 018940           31 SGHMLNDITAACWFTYLLLFLTD-I--GLSPR--GAAA--VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (348)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~~~~~-~--g~s~~--~~g~--i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~  103 (348)
                      +|.+. +.++.....+..++..+ .  +.++.  .++.  +.++..+...++++++|+++||+||||.++ .+.++++++
T Consensus        23 ~g~~~-~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~-~~~~l~~i~  100 (490)
T PRK10642         23 LGNAM-EWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILA-ITIVIMSIS  100 (490)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHH
Confidence            44444 44455555666666655 3  34432  1333  257778899999999999999999999864 566676666


Q ss_pred             HHHHhcCcCCCcccCcccch----hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHH
Q 018940          104 FSSVFGGCMPCRILSTSTLK----VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (348)
Q Consensus       104 ~~~l~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~  179 (348)
                      ..+...  .|       ++.    +....+.+...+.|++.+....+..++++|..| +++|++..++.+.+..+|..++
T Consensus       101 ~~~~a~--~~-------~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~G~~lg  170 (490)
T PRK10642        101 TFCIGL--IP-------SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSP-DRKRGFMGSWLDFGSIAGFVLG  170 (490)
T ss_pred             HHHHHh--cc-------cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHHHH
Confidence            643321  23       221    111123333356778888888888899999885 5789999998888888887777


Q ss_pred             HHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccc---c--cc-CC----chhHHHHHHHHHh
Q 018940          180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G--LR-GN----SHARISWAYWFKK  249 (348)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~---~--~~-~~----~~~~~~~~~~~~~  249 (348)
                      +.+...+...+...  .....|||+.|++.++++++ .++.....||++...   +  ++ ++    ++.+.++++++++
T Consensus       171 ~~~~~~~~~~~~~~--~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (490)
T PRK10642        171 AGVVVLISTIVGEA--NFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATK  247 (490)
T ss_pred             HHHHHHHHHhcCHH--HhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHH
Confidence            66544433332210  00246899999987665554 333445677753211   0  00 00    0112245566653


Q ss_pred             -HHHHH-HHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHH
Q 018940          250 -ILYYQ-VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVL  326 (348)
Q Consensus       250 -~~~~~-~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l  326 (348)
                       ++... .....++....+++...|+|.|+++..|.+............++.+++.++.+++ ||+|||  +.+..+.+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~  325 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR--PFVILGSVA  325 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHH
Confidence             22222 2223344456777888899999988888877555544445566778888888988 999999  777766654


Q ss_pred             HH
Q 018940          327 WV  328 (348)
Q Consensus       327 ~~  328 (348)
                      ..
T Consensus       326 ~~  327 (490)
T PRK10642        326 LF  327 (490)
T ss_pred             HH
Confidence            33

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.87  E-value=6.3e-20  Score=176.80  Aligned_cols=285  Identities=8%  Similarity=-0.084  Sum_probs=184.8

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHH
Q 018940           28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (348)
Q Consensus        28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l  107 (348)
                      ......+............+|.+.++.+.|+.+.|++.+...+...+.+++.|+++||+||||.++ .+.+..+++...+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~-~~~~~~~~~~~~~   99 (417)
T PRK10489         21 AVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLIL-LARGTCGLGFIGL   99 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEE-ehHHHHHHHHHHH
Confidence            333445555666666677788888888779999999999999999999999999999999998754 4555444443322


Q ss_pred             hcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~  187 (348)
                      ..   . .+....+.+...+    ...+.+++.+....+..+++++..+ +++|++..+..+...++|..+++.+++.+.
T Consensus       100 ~~---~-~~~~~~~~~~l~~----~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~  170 (417)
T PRK10489        100 AL---N-AFLPEPSLLAIYL----LGLWDGFFGSLGVTALLAATPALVG-RENLMQAGAITMLTVRLGSVISPALGGLLI  170 (417)
T ss_pred             HH---H-HHcCCCcHHHHHH----HHHHHHHHHHHHHHHHhhhhhhccC-HHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence            10   0 0000112222222    2234566666666677788888874 578899999888888888887766655444


Q ss_pred             HhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--cCCchhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018940          188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNSHARISWAYWFKKILYYQVALVYMLTRLV  265 (348)
Q Consensus       188 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  265 (348)
                      .          ..+|++.+.+.++..++..+ .....||.+.++++  ++.++.++.++..+|||.++...+..++.. .
T Consensus       171 ~----------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  238 (417)
T PRK10489        171 A----------AGGVAWNYGLAAAGTFITLL-PLLRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLT-M  238 (417)
T ss_pred             H----------HHhhHHHHHHHHHHHHHHHH-HHHhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHH-H
Confidence            2          34788887766555444433 34455654322111  111233455667788888665544443332 2


Q ss_pred             HHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhh
Q 018940          266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI  336 (348)
Q Consensus       266 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~  336 (348)
                      ..+...++|.|.++..|.+..+.+.+.....++.+++.++.+++ ||.+++  +.+..+.+...++.+.+.+
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~--~~l~~~~~~~~~~~~~~~~  308 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG--LLMLLSTLGSFLAVGLFGL  308 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc--hHHHHHHHHHHHHHHHHHc
Confidence            34567789999999889987776666666667888888888887 665544  6777777666666655443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.87  E-value=3.6e-19  Score=170.08  Aligned_cols=252  Identities=14%  Similarity=0.073  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcc
Q 018940           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (348)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~  116 (348)
                      ........+.+|.+.++.|.|+.+.|++.++..+...+++++.|+++||+||||.++ .+....+++......  .    
T Consensus        21 ~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~-~~~~~~~~~~~~~~~--~----   93 (394)
T PRK11652         21 QMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVIL-VGMSIFILGTLVALF--A----   93 (394)
T ss_pred             HHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHH-HHHHHHHHHHHHHHH--H----
Confidence            333444455667777777999999999999999999999999999999999988754 566555555543221  1    


Q ss_pred             cCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc
Q 018940          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA  196 (348)
Q Consensus       117 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~  196 (348)
                         .+.....+.+    .+.+++.+...+...++..+..+ +++|++..++.+.+..++..+++.+.+.+.         
T Consensus        94 ---~~~~~l~~~~----~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~---------  156 (394)
T PRK11652         94 ---HSLTVLIAAS----AIQGLGTGVGGVMARTLPRDLYE-GTQLRHANSLLNMGILVSPLLAPLIGGLLT---------  156 (394)
T ss_pred             ---ccHHHHHHHH----HHHHhhhhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence               1233222222    34555555544445556666553 467788777777676666665544433322         


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 018940          197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY  276 (348)
Q Consensus       197 ~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y  276 (348)
                       +..+||+.+.+.++..++..++..+..||++.+++  ++++.++.+++.+|||+++...+..+...........+.+.|
T Consensus       157 -~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (394)
T PRK11652        157 -TLFGWRACYLFLLLLGAGVTFSMARWMPETRPADA--RRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVL  233 (394)
T ss_pred             -hccChHHHHHHHHHHHHHHHHHHHHhCCccCcccc--chhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence             23579999988777776666666666777533221  122245667888999987765554444444555556677888


Q ss_pred             HhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhh
Q 018940          277 VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQR  315 (348)
Q Consensus       277 l~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r  315 (348)
                      +++..|.+..+.+.......++.++++.+.+++ ||.+++
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~  273 (394)
T PRK11652        234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL  273 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887766665555556667777777776 777643

>PRK03699 putative transporter; Provisional

Probab=99.87  E-value=3.3e-19  Score=170.63  Aligned_cols=265  Identities=9%  Similarity=-0.005  Sum_probs=170.8

Q ss_pred             HHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCc
Q 018940           40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (348)
Q Consensus        40 ~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~  119 (348)
                      .......+|.+.++.|+|+.+.|++.+...+...+++++.|+++||+||||.++ .+....+++......  .       
T Consensus        23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~-~~~~~~~i~~~l~~~--~-------   92 (394)
T PRK03699         23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLI-FGFALMILAVAGLMF--S-------   92 (394)
T ss_pred             HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHH--c-------
Confidence            344556677776667999999999999999999999999999999999998754 566565565543321  1       


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchh
Q 018940          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE  199 (348)
Q Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~  199 (348)
                      .+.......+    .+.+++.+.......+.+.+..+ +++|++..+..+....+|+.+++.+.+.++.         ..
T Consensus        93 ~~~~~~~~~~----~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~  158 (394)
T PRK03699         93 HSLALFSIAM----FVLGVVSGITMSIGTFLITHVYE-GKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA---------RS  158 (394)
T ss_pred             chHHHHHHHH----HHHHHhhHhhccchhHHhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cc
Confidence            1233222222    34556555555556677788774 5678888777766666666655444333221         23


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 018940          200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIN  279 (348)
Q Consensus       200 ~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~  279 (348)
                      .+||+.+.+.+++.++..++.+. .+.++.++++++++  ++..+. ..++.++...+..++.....+....|+|.|+++
T Consensus       159 ~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~  234 (394)
T PRK03699        159 IEWYWVYACIGLVYVAIFILTLF-SEFPALGKHAPKAD--KPVAKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQK  234 (394)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHh-cCCccccccCcccc--Cccccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999998877766655444332 22111111111111  111111 124555555555555556666778899999999


Q ss_pred             cccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhH
Q 018940          280 DLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI  334 (348)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~  334 (348)
                      +.|++..+.+.+..+..++.+++.++.+++ ||+++|  +.+..+..+.++....+
T Consensus       235 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~--~~l~~~~~~~~~~~~~~  288 (394)
T PRK03699        235 KFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ--RILTVLAGLALVLMYLF  288 (394)
T ss_pred             HcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchh--hHHHHHHHHHHHHHHHH
Confidence            999988777766666677889999999998 999998  76666665555554443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.87  E-value=1.8e-19  Score=172.38  Aligned_cols=286  Identities=12%  Similarity=0.065  Sum_probs=168.9

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHH
Q 018940           29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (348)
Q Consensus        29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l  107 (348)
                      +....+.....+....++++.|+++. |.|+.+.|++.++..+...+.+|+.|+++||+||||.++. +....++.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~-~~~~~~~~~~~~   85 (396)
T TIGR00882         7 FGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLW-IISGLLVLFAPF   85 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH-HHHHHHHHHHHH
Confidence            33344555566667789999999885 9999999999999999999999999999999999998653 333333332211


Q ss_pred             hcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~  187 (348)
                      +.  ..  +.+... ........+...+.+++++.......++..+..   ++++...+......++|..+++.+++.+ 
T Consensus        86 ~~--~~--~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g~~~g~~~~g~l-  156 (396)
T TIGR00882        86 FI--YV--FGPLLQ-SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS---RNSNFEYGKARMFGCVGWALCASIAGIL-  156 (396)
T ss_pred             HH--HH--hhhHHH-HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh---hhcccccchhhhhcccHHHHHHHHHhhh-
Confidence            10  00  000000 001111111122344555554444445554432   2233333444455566666554443222 


Q ss_pred             HhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc------cCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 018940          188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL------RGNSHARISWAYWFKKILYYQVALVYML  261 (348)
Q Consensus       188 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~  261 (348)
                         .       ..+|+..|++.+++.++..++.+...+|+++++++      +++++..++.++.+|||+++...+..++
T Consensus       157 ---~-------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  226 (396)
T TIGR00882       157 ---F-------SIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVG  226 (396)
T ss_pred             ---h-------ccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHH
Confidence               1       24789999888777777766655545553221110      1111223456788999987766555544


Q ss_pred             HHHHHHhhhHHHHHHHhhcc---cccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhh
Q 018940          262 TRLVVNVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI  336 (348)
Q Consensus       262 ~~~~~~~~~~~~~~yl~~~~---~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~  336 (348)
                      ..........+++.|+.+..   +.+....+....+..+..+++.+..+++ ||+|+|  +.+.++..+.+++......
T Consensus       227 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~--~~l~~~~~l~~l~~~~~~~  303 (396)
T TIGR00882       227 VACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK--NALLIAGTIMSVRIIGSSF  303 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHh
Confidence            44555555567788877654   3333344544444555666677778887 999999  8888887777776655443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.87  E-value=6.1e-19  Score=168.74  Aligned_cols=275  Identities=12%  Similarity=0.024  Sum_probs=166.7

Q ss_pred             hHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHH
Q 018940           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (348)
Q Consensus        27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~  105 (348)
                      ..+..+.+..........++++.|+++. |.|++++|++.+...+...+.+++.|.++||+||||.+++.+.+..++...
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~   97 (393)
T PRK15011         18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACT   97 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence            3444456777777777889999998765 999999999988887777777777777799999999866555554444433


Q ss_pred             HHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccc--hhHHHHHHHHHHHHHHHHHHHH
Q 018940          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSR--VVLTSCRNAFTMVANLSLYAIA  183 (348)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R--~~~~~~~~~~~~ig~~~~~~~~  183 (348)
                      ....         ..+.+...+.    ..+.+...+...+...++..+..+ +++|  +..+++.+.+.++|.++++.++
T Consensus        98 ~~~~---------~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~~g~~i~  163 (393)
T PRK15011         98 LFAW---------NRNYFVLLFV----GVFLSSFGSTANPQMFALAREHAD-KTGREAVMFSSFLRAQVSLAWVIGPPLA  163 (393)
T ss_pred             HHHH---------hhHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHHHHhhHHH
Confidence            2211         1122211111    112333333334444455555432 3334  2345666777777777765544


Q ss_pred             HHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhH-HHHHHHHHHHHH
Q 018940          184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKI-LYYQVALVYMLT  262 (348)
Q Consensus       184 ~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~  262 (348)
                      +.+.          +..|||+.+++.+++.++..++.+...||.+.++++++ ++ .+.   ..+|+ ..+.......+.
T Consensus       164 ~~l~----------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~---~~~~~~~~~~~~~~~~~~  228 (393)
T PRK15011        164 YALA----------MGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT-GT-LEA---PRRNRRDTLLLFVICTLM  228 (393)
T ss_pred             HHHH----------HhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc-cc-ccc---cccccccHHHHHHHHHHH
Confidence            3332          24589999988888777777777777777532221111 11 111   12232 223232233333


Q ss_pred             HHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHH
Q 018940          263 RLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA  332 (348)
Q Consensus       263 ~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~  332 (348)
                      .........+.|.|+++..|++..+.+.+.....++.+++.++.+++ ||+|+|  +.+..+....++...
T Consensus       229 ~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~--~~~~~~~~~~~~~~~  297 (393)
T PRK15011        229 WGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR--FLMRVAAVAGVCFYA  297 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHHHH
Confidence            34445556789999999889987766655455556667788889997 999999  666666555544443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.87  E-value=5.4e-20  Score=173.32  Aligned_cols=250  Identities=14%  Similarity=0.085  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc
Q 018940           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~  121 (348)
                      ......|.+.++.|.|..+.|++.++..+...+++++.|+++||+||||.+ ..+....+++..+...  .       .+
T Consensus        13 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~~~--~-------~~   82 (379)
T TIGR00881        13 NFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFL-PIGLILCAIVNLFFGF--S-------TS   82 (379)
T ss_pred             hhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehh-HHHHHHHHHHHHHHHH--h-------hh
Confidence            333444544445599999999999999999999999999999999999875 4566666666543321  1       12


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhH
Q 018940          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (348)
Q Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g  201 (348)
                      .....+.    ..+.+++.+...+...+++.+..+ +++|++..++.+.+..+|..+++.+....+   .      ...+
T Consensus        83 ~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~------~~~~  148 (379)
T TIGR00881        83 LWVMAAL----WALNGIFQGMGWPPCGRTVTKWFS-RSERGTWVSFWNCSHNVGGGLLPPLVLFGI---A------ELYS  148 (379)
T ss_pred             HHHHHHH----HHHHHhhccccCCchHHHHHHhcC-HhhheeeEeehhccchhHHHHHHHHHHHHH---H------hcCC
Confidence            2322222    235666667667777788888874 578999989888888888777652211211   1      2457


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccc-----c---cC-------C----chhHHHHHHHHHhHHHHHHHHHHHHH
Q 018940          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-----L---RG-------N----SHARISWAYWFKKILYYQVALVYMLT  262 (348)
Q Consensus       202 ~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~-----~---~~-------~----~~~~~~~~~~~~~~~~~~~~l~~~~~  262 (348)
                      |++.+.+.+++.++..++.+...||++++++     +   ++       +    ++.+...++.+|+|.++.+.+..++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (379)
T TIGR00881       149 WHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFV  228 (379)
T ss_pred             chhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHH
Confidence            9999888877777776776666766432110     0   00       0    11122356678888888777777777


Q ss_pred             HHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhh
Q 018940          263 RLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQR  315 (348)
Q Consensus       263 ~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r  315 (348)
                      .........|.|.|+.+..|.+..+.+.......++.+++.++.+++ ||..+|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  282 (379)
T TIGR00881       229 YVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNG  282 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCC
Confidence            77777888899999999889987776666666677888899999987 886544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.86  E-value=1.8e-19  Score=174.96  Aligned_cols=250  Identities=12%  Similarity=0.043  Sum_probs=169.6

Q ss_pred             HHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhH
Q 018940           46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE  125 (348)
Q Consensus        46 ~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~  125 (348)
                      +..+++++.|+|+.+.|++.++..+...+++++.|+++||+||||.+ ..+.+..+++......  .+.   ...+....
T Consensus        48 ~~~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~-~~~~~~~~~~~~~~~~--~~~---~~~~~~~l  121 (438)
T TIGR00712        48 LAMPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL-PAGLILSAAVMLLMGF--VPW---ATSSIAIM  121 (438)
T ss_pred             hhhHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh-HHHHHHHHHHHHHHhc--ccc---ccchHHHH
Confidence            34456666799999999999999999999999999999999998875 4566666666543321  120   01122211


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHH
Q 018940          126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI  205 (348)
Q Consensus       126 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  205 (348)
                      .+.    ..+.+++.+....+....+.|..+ +++|+++.++.+.+.++|+.+++.+.+....         ...+||+.
T Consensus       122 ~~~----~~l~g~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~---------~~~~w~~~  187 (438)
T TIGR00712       122 FVL----LFLNGWFQGMGWPPCGRTMVHWWS-QSERGTIVSIWNCAHNIGGGIPPLLVLLGMA---------WFNDWHAA  187 (438)
T ss_pred             HHH----HHHHHHHhhcchHHHHHHHHHhcC-cccchhHHHHHHHHHHhHhHHHHHHHHHHHH---------HhhhhHHH
Confidence            111    224566666655666677788774 6789999999888888877765544322221         23589999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccccc---c-c---c--------C-C--chhHHH-HHHHHHhHHHHHHHHHHHHHHHHH
Q 018940          206 AYSSIFIGCCFVGIFLSRTEEPRLKM---G-L---R--------G-N--SHARIS-WAYWFKKILYYQVALVYMLTRLVV  266 (348)
Q Consensus       206 ~~i~~~i~~~~~ll~~~~~~e~~~~~---~-~---~--------~-~--~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~  266 (348)
                      +++.+++.++..++.++.+||++.+.   + +   +        + +  .+.++. .+..+||+.++...+..++.....
T Consensus       188 f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (438)
T TIGR00712       188 LYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLR  267 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence            99888887777767777777643210   0 0   0        0 0  011111 124678888777766655655666


Q ss_pred             HhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhh
Q 018940          267 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQR  315 (348)
Q Consensus       267 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r  315 (348)
                      ++...|+|.|+++..|++..+.+.......+.++++.++.+++ ||++++
T Consensus       268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            7788899999999889888777766666777889999999998 999755

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00896 CynX cyanate transporter

Probab=99.86  E-value=2.9e-19  Score=168.35  Aligned_cols=265  Identities=15%  Similarity=0.101  Sum_probs=176.8

Q ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccch
Q 018940           44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (348)
Q Consensus        44 ~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~  123 (348)
                      .+.+|.+.++.|+|+.+.|++.+...+...+++++.|+++||+||||.++ .+....+++.....   .+       +..
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~---~~-------~~~   88 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVA-AGLLLIAAGILIRS---AP-------GTA   88 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHH-HHHHHHHHHHHHHH---hc-------cHH
Confidence            46677777777999999999999999999999999999999999998864 46555555443221   11       222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHH
Q 018940          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR  203 (348)
Q Consensus       124 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~  203 (348)
                      ...+.    ..+.+++.+.......+.+.+..  +++|+++.+..+.+..+|..+++.+.+++....        ..+||
T Consensus        89 ~l~~~----~~~~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~--------~~~w~  154 (355)
T TIGR00896        89 LLFAG----TALIGVGIAIINVLLPSLIKRDF--PQRVGLMTGLYSMALMGGAALAAAATVPLAQHS--------GGHWQ  154 (355)
T ss_pred             HHHHH----HHHHHHHHHHHhccchHHHHHhC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhhHH
Confidence            22222    23456666655555555666654  357899999988888888888776665554321        23588


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccc
Q 018940          204 WIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM  283 (348)
Q Consensus       204 ~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~  283 (348)
                      +.+.+.+++.++...   .+.+|.+.+++++ +++.++..++.+|||.++...+...+..........|+|.|+++ .|.
T Consensus       155 ~~f~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~  229 (355)
T TIGR00896       155 QALAWWALPALLALL---AWIPQVRRRVAAN-QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGA  229 (355)
T ss_pred             HHHHHHHHHHHHHHH---HHhhhhccccCCC-CCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC
Confidence            888766554433322   2234422211111 11111234567888887766666555556677778899999987 588


Q ss_pred             cchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhccC
Q 018940          284 GQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPM  339 (348)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~~~  339 (348)
                      +..+.+.......++.+++.++.+++ ||+++| |+.+..+..+.+++.+.+.+.+.
T Consensus       230 ~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~-~~~~~~~~~~~~~~~~~~~~~~~  285 (355)
T TIGR00896       230 SAATAGSLLALMQLAQAASALLIPALARRVKDQ-RGIVAVLAVLQLVGLCGLLFAPM  285 (355)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHhhh
Confidence            87777766677778899999999998 999655 26677777777777766665543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09952 shikimate transporter; Provisional

Probab=99.86  E-value=8.5e-19  Score=170.21  Aligned_cols=304  Identities=12%  Similarity=0.030  Sum_probs=180.9

Q ss_pred             CCCCCCCCCchHhhHH-hhhhhHHHHHHHHHHHHH-HHHHHh-h--CCChhHHHHHH-----HHHHHHHHhhhhhhHhhh
Q 018940           14 DDSFTQPVGRWSVLYY-GSGHMLNDITAACWFTYL-LLFLTD-I--GLSPRGAAAVM-----LSGQIADGFATIFIGELI   83 (348)
Q Consensus        14 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~l-~~~~~~-~--g~s~~~~g~i~-----~~~~i~~~i~~p~~G~l~   83 (348)
                      .||++-.++.+++..+ .+.....+.++.....+. +.+..+ .  +.++. .|++.     ++..+...+++++.|+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~   88 (438)
T PRK09952         10 PDEGTLSLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFG   88 (438)
T ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3666555555444332 223444455555555554 344443 3  67766 45543     355667788899999999


Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc-chhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccch
Q 018940           84 DRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST-LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRV  162 (348)
Q Consensus        84 Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~  162 (348)
                      ||+||||.++ .+....+++..+...  .|.    ... ..+....+.+...+.|++.+...+...+++.|..| +++|+
T Consensus        89 Dr~Grr~~l~-~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p-~~~rg  160 (438)
T PRK09952         89 DRLGRKRMLM-LTVWMMGIATALIGL--LPS----FSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP-KNKKA  160 (438)
T ss_pred             HhhccHHHHH-HHHHHHHHHHHHHhc--CCc----HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC-CCCCc
Confidence            9999999865 566666666544321  231    010 01111123333456778877777777788889885 57899


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccc---ccCCch-
Q 018940          163 VLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG---LRGNSH-  238 (348)
Q Consensus       163 ~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~---~~~~~~-  238 (348)
                      +..+..+.+..+|..++..+...+...+....  ....|||+.|++.+++.++. +......||++...+   ++++.+ 
T Consensus       161 ~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~--~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~~~~~  237 (438)
T PRK09952        161 FYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQ--FLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQAAAKK  237 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--hhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhcccccc
Confidence            98888888888887776655444333222100  02368999998876665443 333344566432111   101111 


Q ss_pred             hHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhh
Q 018940          239 ARISWAYWFKKILYYQVA-LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL  316 (348)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~  316 (348)
                      .....+.++++|+.+... ...++.....+...+|.|.|+++..|++.+.......+..+.++++.++.+++ ||+||| 
T Consensus       238 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr-  316 (438)
T PRK09952        238 RIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR-  316 (438)
T ss_pred             cCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-
Confidence            111233466777655543 34555556677788899999998888877544334444556667788888988 999999 


Q ss_pred             hHHHHHHHHHHHHHH
Q 018940          317 KAYYSAGGVLWVFCG  331 (348)
Q Consensus       317 k~~~~~g~~l~~v~~  331 (348)
                       +.+..+.++.+++.
T Consensus       317 -~~~~~~~~~~~~~~  330 (438)
T PRK09952        317 -RVYITGALIGTLSA  330 (438)
T ss_pred             -HHHHHHHHHHHHHH
Confidence             77777766555544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.86  E-value=4.7e-19  Score=168.76  Aligned_cols=275  Identities=13%  Similarity=0.052  Sum_probs=176.1

Q ss_pred             HhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHH
Q 018940           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (348)
Q Consensus        25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~  104 (348)
                      ......++.+..........+++|.|.++.|.|+.++|++.+...+...+++|+.|+++||+||||.+. .+....+++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~-~~~~~~~~~~   85 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYY-LASLIFAAGC   85 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            355666777778888888889999999988999999999999999999999999999999999998865 5666666655


Q ss_pred             HHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 018940          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (348)
Q Consensus       105 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~  184 (348)
                      .....  .       .+.....+.+    .+.|++.+...+...+.+.+..+ +++|++..+..+.+.++|..+++.+.+
T Consensus        86 ~~~~~--~-------~~~~~l~~~~----~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~  151 (381)
T PRK03633         86 AGLGL--M-------VGFWSWLAWR----FVAGIGCAMIWVVVESALMCSGT-SRNRGRLLAAYMMVYYLGTVLGQLLVS  151 (381)
T ss_pred             HHHHH--h-------ccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            43221  1       1333222222    35667766665555555666654 568999999888888888777655543


Q ss_pred             HHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018940          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRL  264 (348)
Q Consensus       185 ~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  264 (348)
                      .+.....      ....|+....     ......+.+...+|+  ++++++    +++.++.+|||.++......++...
T Consensus       152 ~l~~~~~------~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  214 (381)
T PRK03633        152 KVSTELM------SVLPWVTGLV-----LAAILPLLFTRILNQ--QAENHD----STSIWPMLKLRQARLGVNGCIISGI  214 (381)
T ss_pred             ccccccc------chHHHHHHHH-----HHHHHHHHHhcccCC--CCCCCC----CCCHHHHHHhcchHHHHHHHHHHHH
Confidence            3321110      1123332211     111111111112221  111111    1234567888886654433333334


Q ss_pred             HHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhH
Q 018940          265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI  334 (348)
Q Consensus       265 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~  334 (348)
                      .......++|.|+++ .|.+..+.+....+..++.+++.+..+++ ||+|+|  +.+..+..+..++.+.+
T Consensus       215 ~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~--~~l~~~~~~~~~~~~~~  282 (381)
T PRK03633        215 VLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL--LVLRVQVFVVILGSIAM  282 (381)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH--HHHHHHHHHHHHHHHHH
Confidence            455566789999887 47777666655566667888888888987 999999  77777777666665443

>PRK11043 putative transporter; Provisional

Probab=99.86  E-value=2e-18  Score=165.36  Aligned_cols=262  Identities=11%  Similarity=0.033  Sum_probs=165.6

Q ss_pred             HHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCccc
Q 018940           38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (348)
Q Consensus        38 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~  117 (348)
                      ....+..+.++.+.++.|.|+.++|++.++..+...+++++.|+++||+||||.+ ..+.....++......  .     
T Consensus        20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~~~--~-----   91 (401)
T PRK11043         20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL-LAGLSLFALGSLGMLW--V-----   91 (401)
T ss_pred             HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHH-HHHHHHHHHHHHHHHH--h-----
Confidence            3334444555555566699999999999999999999999999999999999875 4555555555443221  1     


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc
Q 018940          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (348)
Q Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~  197 (348)
                        .+.....+.+    .+.+++.+.......+++.+..+ +++|++..+..+....++..+++.+.+.+.          
T Consensus        92 --~~~~~l~~~~----~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~----------  154 (401)
T PRK11043         92 --ESAAQLLVLR----FVQAVGVCSAAVIWQALVIDRYP-AQKANRVFATIMPLVALSPALAPLLGAWLL----------  154 (401)
T ss_pred             --cCHHHHHHHH----HHHHhhhHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence              1333222222    24555555555556677777764 455666666665555666666554443332          


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 018940          198 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV  277 (348)
Q Consensus       198 ~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl  277 (348)
                      +..+||+.+++.+++.++..++.+. .+|++.++   ++++.++.+++.+|+|+++...+...+..........+.|.|+
T Consensus       155 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  230 (401)
T PRK11043        155 NHFGWQAIFATLFAITLLLILPTLR-LKPSKKAR---KQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFIL  230 (401)
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHHH-cCCCCCcc---ccchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            2358999988877777666555443 44422211   1122345678889999877655544444455556677888887


Q ss_pred             hhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 018940          278 INDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG  331 (348)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~  331 (348)
                      ++ .|.+..+.+.......++.+++.++.+++ ||+++|  +....+....+++.
T Consensus       231 ~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~--~~~~~~~~~~~~~~  282 (401)
T PRK11043        231 EQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGE--QLLPWLLVLFAVSV  282 (401)
T ss_pred             HH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHH
Confidence            65 58887666654444456677888888887 999988  55555444444433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.86  E-value=1.6e-18  Score=168.14  Aligned_cols=284  Identities=15%  Similarity=0.074  Sum_probs=167.5

Q ss_pred             hHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHH-HH-----HHHHHHhhhhhhHhhhcccCCchHHHHHHHHHH
Q 018940           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVM-LS-----GQIADGFATIFIGELIDRFGHFKIWHGAGSVLV  100 (348)
Q Consensus        27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~-~~-----~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~  100 (348)
                      ....++.+....-...+....|...++.+.++.+.+.+. +.     ..+...+++++.|+++||+||||.++ .+....
T Consensus        18 ~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~-~~~~~~   96 (434)
T PRK15075         18 LRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLI-VTLSIM   96 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHH-HHHHHH
Confidence            344444444444444445555655566688776655432 22     23333567899999999999999865 566666


Q ss_pred             HHHHHHHhcCcCCCcccCcccchhH----HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHH
Q 018940          101 AVSFSSVFGGCMPCRILSTSTLKVE----TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN  176 (348)
Q Consensus       101 ~i~~~~l~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~  176 (348)
                      .++......  .|       +....    .....+...+.+++.+....+..++++|..| +++|++..++.+.+.++|.
T Consensus        97 ~~~~~l~~~--~~-------~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p-~~~rg~~~~~~~~~~~~g~  166 (434)
T PRK15075         97 ASGTLLIAF--VP-------GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT-PGRKGFYTSWQSASQQVAV  166 (434)
T ss_pred             HHHHHHHHh--CC-------cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC-cccchHHHHHHHHHHHHHH
Confidence            666543321  12       21110    0111222345667766666666778999885 6789999999888888887


Q ss_pred             HHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHH-
Q 018940          177 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQV-  255 (348)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  255 (348)
                      .+++.++..+...+...  ..+..|||+.|++.++.. ....+.....||.+...+++++.+.++.++...++++.+.. 
T Consensus       167 ~~g~~~g~~l~~~~~~~--~~~~~gWr~~f~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (434)
T PRK15075        167 VFAALLGYLLNQWLSPA--QMAEWGWRIPFLIGCLIV-PFIFLIRRSLEETEEFLARKHRPSMREIFRSLAANWRIVLAG  243 (434)
T ss_pred             HHHHHHHHHHHHhCCHH--HHhccchHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHhhhccccccHHHHHHHhHHHHHHH
Confidence            77666654443332210  002468999998654332 22222222233422111111111223334555566654433 


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHH
Q 018940          256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVL  326 (348)
Q Consensus       256 ~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l  326 (348)
                      ....++.....+....|.|.|+++..|++..+.+....+..++++++.++.+++ ||+|||  +.+..+..+
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r--~~~~~~~~~  313 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR--PVLIAFTVL  313 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHH
Confidence            233334455667788899999999889987766666666677888999999998 999999  666555443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.86  E-value=2.1e-18  Score=165.18  Aligned_cols=267  Identities=9%  Similarity=-0.014  Sum_probs=177.4

Q ss_pred             hHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHH
Q 018940           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (348)
Q Consensus        27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~  106 (348)
                      ..+..+.+...+.+......++...++.+.++.+.+++.+.+.+...+.+|+.|+++||+||||.++ .+....+++...
T Consensus         6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~-~~~~~~~~~~~~   84 (393)
T PRK11195          6 YAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMF-IANGIKLLGCLL   84 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhH-HHHHHHHHHHHH
Confidence            3455666666665555555566666677999999999999999999999999999999999999865 565555555433


Q ss_pred             HhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (348)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~  186 (348)
                      ...  .+       +.   ...+    .+.+++.+...+...++++|+.+ +|||+++.++.+....+|..+++.+++.+
T Consensus        85 ~~~--~~-------~~---~~~r----~l~G~~~a~~~pa~~a~i~~~~~-~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195         85 MLF--GI-------HP---LLAY----GLVGIGAAAYSPAKYGILTELLP-GEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             HHH--HH-------HH---HHHH----HHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221  01       11   1222    35778888888888999999985 68899999998888888888877666554


Q ss_pred             HHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCC------chhHHHHHHHHHhHHHHHHHHHHH
Q 018940          187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN------SHARISWAYWFKKILYYQVALVYM  260 (348)
Q Consensus       187 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~  260 (348)
                      ..           ..|+..+.+.+.... ...+..+.+||++.+++++++      ++.++.++.+++||.++.......
T Consensus       148 ~~-----------~~~~~~~~i~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  215 (393)
T PRK11195        148 AD-----------PHAEAALAVCALIYL-LAALFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTT  215 (393)
T ss_pred             HH-----------HHHHHHHHHHHHHHH-HHHHHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            42           235555544433322 223344566764322211111      112234566788887665444333


Q ss_pred             HHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHH
Q 018940          261 LTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGV  325 (348)
Q Consensus       261 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~  325 (348)
                      +.+.........+|.|+++.+|.++.+.+.......++.++++++.+++ ||.++|  +.+..++.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~--~~~~~g~~  279 (393)
T PRK11195        216 LFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL--RVLPAGIL  279 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--chHHHHHH
Confidence            3344445556677788888889988877776666777888888888887 777766  66666643

>PRK12382 putative transporter; Provisional

Probab=99.86  E-value=2.2e-18  Score=164.51  Aligned_cols=281  Identities=10%  Similarity=0.039  Sum_probs=166.1

Q ss_pred             HhhHHhhhhhHHHHHHHHHHHHHHHHHHh-hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHH
Q 018940           25 SVLYYGSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (348)
Q Consensus        25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~  103 (348)
                      ......++.+.......+..+.+|.|+++ .|.|+.++|++.+...+..++.+|+.|+++||+||||+++ .+.+..+++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~-~~~~~~~~~   94 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSAL-QGMLACGLA   94 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHH-HHHHHHHHH
Confidence            34445556666666667777888888765 5999999999999999999999999999999999999865 455544443


Q ss_pred             HHHH-hcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Q 018940          104 FSSV-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (348)
Q Consensus       104 ~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~  182 (348)
                      .... .....+.  ....+....    .+...+.|++.+...++..+++.+..+ +|+|+++.++.+.+...|..+++.+
T Consensus        95 ~~~~~~~~~~~~--~~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~a~~~~~~~~~~g~~~g~~~  167 (392)
T PRK12382         95 GLAYLLAAILPV--SAPFKFALL----VVGRLILGFGESQLLTGALTWGLGLVG-PKHSGKVMSWNGMAMYGALAAGAPL  167 (392)
T ss_pred             HHHHHhhhcccc--chhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhCC-ccccchhhhHHHHHHHHHHHHHHHH
Confidence            3211 1000110  000122212    222236677777666666677888774 6889999998877777776665544


Q ss_pred             HHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHH
Q 018940          183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLT  262 (348)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  262 (348)
                      ++.+.          +..||++.+.+..++.++... .....||.+  ++++++++.++..+...+ +.     +...+.
T Consensus       168 ~~~l~----------~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~-----~~~~l~  228 (392)
T PRK12382        168 GLLLH----------SHFGFAALALTTMVLPLLAWA-FNGTVRKVP--AHAGERPSLWSVVGLIWK-PG-----LGLALQ  228 (392)
T ss_pred             HHHHH----------hccChHHHHHHHHHHHHHHHH-HHHhccCCC--CCcccCchHHHHHHHHHH-hH-----HHHHHH
Confidence            33332          235788776654433322221 112223211  111111122222222111 11     112222


Q ss_pred             HHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          263 RLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       263 ~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      .........+.|.|+++. +.+.  .+.......++.+++.++.+++ ||+|+|  |.+..+..+.+++.+...+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~--~~~~~~~~~~~~~~~~~~~~  299 (392)
T PRK12382        229 GVGFAVIGTFVSLYFASK-GWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGV--KVAIVSLLVETVGLLLLWLA  299 (392)
T ss_pred             HHHHhHHHHHHHHHHHhc-CCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCC--eehHHHHHHHHHHHHHHHHc
Confidence            344445667888888764 5543  2233333445667788888887 999998  77778877777777655443

>TIGR00895 2A0115 benzoate transport

Probab=99.85  E-value=3.3e-19  Score=169.19  Aligned_cols=262  Identities=15%  Similarity=0.052  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCc
Q 018940           40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (348)
Q Consensus        40 ~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~  119 (348)
                      ......+.|.+.++.|.++.+.|++.++..+...+++++.|+++||+||||.+ ..+.+..+++......  .       
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~--~-------  102 (398)
T TIGR00895        33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVL-LWSILLFSVFTLLCAL--A-------  102 (398)
T ss_pred             HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH-HHHHHHHHHHHHHHHH--c-------
Confidence            33444455555555699999999999999999999999999999999998775 4566655555543321  1       


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchh
Q 018940          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE  199 (348)
Q Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~  199 (348)
                      .+.....+.    ..+.+++.+....+..+++.|..+ +++|++..++.+.+..+|..+++.+.+.+.          +.
T Consensus       103 ~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~----------~~  167 (398)
T TIGR00895       103 TNVTQLLIL----RFLAGLGLGGLMPNLNALVSEYAP-KRFRGTAVGLMFCGYPIGAAVGGFLAGWLI----------PV  167 (398)
T ss_pred             cchHHHHHH----HHHHhcccccchhhHHHHHHHHcC-HHhhchhHhhHhhHHHHHHHHHHHHHHHHh----------hc
Confidence            122222222    235667777777778888999874 578999999988888888877666544433          23


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccccccc---c-c-----------------------c-cC-CchhHHHHHHHHHhH
Q 018940          200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK---M-G-----------------------L-RG-NSHARISWAYWFKKI  250 (348)
Q Consensus       200 ~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~---~-~-----------------------~-~~-~~~~~~~~~~~~~~~  250 (348)
                      .+|++.+.+.+++..+..++.....||++..   + +                       + ++ +++.++.++..++++
T Consensus       168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (398)
T TIGR00895       168 FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGK  247 (398)
T ss_pred             ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcch
Confidence            5788888877666666666666666664210   0 0                       0 00 011122233333333


Q ss_pred             H---HHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHH
Q 018940          251 L---YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVL  326 (348)
Q Consensus       251 ~---~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l  326 (348)
                      .   ...+.+..++..........|+| ++.++.|.+..+.+.......++.+++.++.+++ ||+|+|  +........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~  324 (398)
T TIGR00895       248 TARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR--VTALLLLLG  324 (398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHH
Confidence            2   22233344455556667777888 6666678887766666666778889999999998 999988  554444433


Q ss_pred             HHH
Q 018940          327 WVF  329 (348)
Q Consensus       327 ~~v  329 (348)
                      .+.
T Consensus       325 ~~~  327 (398)
T TIGR00895       325 AVF  327 (398)
T ss_pred             HHH
Confidence            333

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.85  E-value=3.1e-19  Score=172.21  Aligned_cols=282  Identities=11%  Similarity=0.040  Sum_probs=159.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcC
Q 018940           32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (348)
Q Consensus        32 g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~  110 (348)
                      ..+..........++++.|+++. |+|+.++|.+.++..+...+.+|+.|+++||+||||.+++ +....++.....+. 
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~-~~~~~~~~~~~~~~-   95 (420)
T PRK09528         18 FFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLW-IISGLLVLFGPFFI-   95 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH-HHHHHHHHHHHHHH-
Confidence            34444455556789999999985 9999999999999999999999999999999999988654 33332222211110 


Q ss_pred             cCCCcccCcccchhHHHHHHHHH-HHHHHHHHHHHHhHhhhhhhccc-CcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          111 CMPCRILSTSTLKVETISYCVFA-AIFNVGWAATQVAHMSMVNCITL-NSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~~-~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~  188 (348)
                       ..     ..+..   ....+.. .+.++..+....+......++.+ .+++|+...+..+...++|..+++.+.+.+. 
T Consensus        96 -~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~-  165 (420)
T PRK09528         96 -YV-----FAPLL---QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILF-  165 (420)
T ss_pred             -HH-----HHHHH---HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHH-
Confidence             00     00000   0001000 01112222221111122222221 1234555556666666777776655543332 


Q ss_pred             hccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccc---c-cc--CCchhHHHHHHHHHhHHHHHHHHHHHHH
Q 018940          189 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G-LR--GNSHARISWAYWFKKILYYQVALVYMLT  262 (348)
Q Consensus       189 ~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~---~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~  262 (348)
                                ..+|++.+++.+++.++..++.++..+|++++.   + ++  +++...+..++.+|||.++.+.+...+.
T Consensus       166 ----------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~  235 (420)
T PRK09528        166 ----------NINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGV  235 (420)
T ss_pred             ----------hcCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHH
Confidence                      236888888877776666555554444432221   0 10  1111123345678888866554433333


Q ss_pred             HHHHHhhhHHHHHHHhhcc---cccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          263 RLVVNVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       263 ~~~~~~~~~~~~~yl~~~~---~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      .........++|.|+.+..   +.+..+.+....+..++.+++.++.+++ ||+|+|  +.+..+.++.+++.....+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~~~~l~~~~~~l~~~~  312 (420)
T PRK09528        236 ACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAK--NALLLAGTIMAVRIIGSGFA  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHHhc
Confidence            3444444456777766543   4444444555555556667888888988 999999  77777777777766555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.85  E-value=3e-18  Score=163.98  Aligned_cols=283  Identities=9%  Similarity=-0.002  Sum_probs=172.5

Q ss_pred             hHhhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHH
Q 018940           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV  102 (348)
Q Consensus        24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i  102 (348)
                      ++.....+..+.......+..++++.+.++. |.|+.++|++.++..+..++.+|+.|+++||+||||.++ .+.+..++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~-~~~~~~~~   93 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVV-FGLCGCAL   93 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHH-HHHHHHHH
Confidence            3445566666677777777888999887664 999999999999999999999999999999999999864 55555554


Q ss_pred             HHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Q 018940          103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (348)
Q Consensus       103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~  182 (348)
                      +......  ..  +..... ........+...+.|++.+.......+++.+.. ++|+|+++.++...+..+|..+++.+
T Consensus        94 ~~~~~~~--~~--~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l  167 (399)
T PRK05122         94 SGLLYLL--AG--LLAAWP-VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRV-GALHTGRVISWNGIATYGALAIGAPL  167 (399)
T ss_pred             HHHHHHH--hh--hhhccc-hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhc-ChhhhccchhhhhhhhhHHHHHHHHH
Confidence            4322211  00  000000 111112222334677777777777777777877 46789999988877777776666555


Q ss_pred             HHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHH
Q 018940          183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLT  262 (348)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  262 (348)
                      ++.+..          ..+|++.+.+.+++.++..+. ....||+  +++++++    .++++.+|+  .+.......+.
T Consensus       168 ~~~l~~----------~~g~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~----~~~~~~~~~--~~~~~~~~~~~  228 (399)
T PRK05122        168 GVLLYH----------WGGLAGLGLLIMLLALLGLLL-ARPRPAV--PPVKGER----LPFRRVLGR--VWPYGMGLALA  228 (399)
T ss_pred             HHHHHH----------cccHHHHHHHHHHHHHHHHHH-HhcCCCC--CCCCccc----hhHHHHHHH--HHHHHHHHHHH
Confidence            443332          357888877665544332222 1112221  1111111    123333332  12112222333


Q ss_pred             HHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          263 RLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       263 ~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      .........+.+.|+.+. |.+.  .+.......++.+++.++.+++ ||+|+|  +.+..+..+.+++.....+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~  299 (399)
T PRK05122        229 SIGFGTIATFITLYYAAR-GWDG--AALALTLFGVAFVGARLLFGNLINRLGGL--RVAIVSLLVEILGLLLLWLA  299 (399)
T ss_pred             HHHHHHHHHHHHHHHHHc-cccc--chHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHHh
Confidence            445556667888888754 5432  2333344556777888888887 999988  77777777777776555543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.85  E-value=5.8e-18  Score=161.71  Aligned_cols=271  Identities=12%  Similarity=-0.004  Sum_probs=173.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCChhHHHHH--HHHHHHHHHhhhhhhHh-hhcccCCchHHHHHHHHHHHHHHHHHhcC
Q 018940           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAV--MLSGQIADGFATIFIGE-LIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (348)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i--~~~~~i~~~i~~p~~G~-l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~  110 (348)
                      +...+......+++|.|++|.|.|++++|.+  .....+...+.+|++++ .+||+||||.|++......+.....+.. 
T Consensus        11 ~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~-   89 (390)
T TIGR02718        11 LSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLAL-   89 (390)
T ss_pred             HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHc-
Confidence            4556666777899999999999999999997  46778888899999966 7999999999866543333322222210 


Q ss_pred             cCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018940          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~  190 (348)
                      ..+   . .....+..    ......+...+..++...++..|.. ++++++..++.+..+..+|..+++...+.+.   
T Consensus        90 ~~~---~-~~~~~~~~----~~~~~~~~~~a~~d~~~d~~~~~~~-~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~---  157 (390)
T TIGR02718        90 VGP---D-VAGAGWAV----GLLACASLASATQDIATDGMAAEHF-NGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF---  157 (390)
T ss_pred             CCc---c-hhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhC-CHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            011   0 11111111    1112333445555666666665544 3445566777777666777776654433333   


Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q 018940          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQ  270 (348)
Q Consensus       191 ~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  270 (348)
                             +..+||..+++.+++..+..+..++..+|+ .+++ +++++.++++++.+|||.++......++.+.......
T Consensus       158 -------~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~  228 (390)
T TIGR02718       158 -------GKFGQRPAFLLVACVPLASLVCVLWLKDRA-VASP-EAPLARRASLFRFFRRPLAWSLLALALLSAMTAVSGF  228 (390)
T ss_pred             -------HHhCHHHHHHHHHHHHHHHHHHHHHcCCCC-cCcc-ccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHH
Confidence                   246899999988877766655554443332 2111 1111223456788999987777666667767777777


Q ss_pred             HHHHHHHhhcccccchhhhHHhHHHH-HHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHH
Q 018940          271 AYLAFYVINDLRMGQSAKALVPAIIY-ICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVF  329 (348)
Q Consensus       271 ~~~~~yl~~~~~~~~~~~~~~~~~~~-~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v  329 (348)
                      .+.+.|++| .|++.++.+....+.. ...+++.++.+++ ||+|+|  +.+..+.++.++
T Consensus       229 ~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~--~~l~~~~~~~~~  286 (390)
T TIGR02718       229 GLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW--RTFILGVGLAGS  286 (390)
T ss_pred             HHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHH
Confidence            889999987 5998887776544433 3556778888987 999999  777766665533

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.85  E-value=7.8e-19  Score=163.05  Aligned_cols=262  Identities=13%  Similarity=0.039  Sum_probs=186.5

Q ss_pred             HhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHH
Q 018940           52 TDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCV  131 (348)
Q Consensus        52 ~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  131 (348)
                      +|.|+|+.|.+++.++..+..++.-.+.|.+.||+|.||... .+.++..+-.+.+..   .   .+..++ +.++... 
T Consensus        42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~-~s~~l~~IP~~~~~~---a---~~~~~~-~~ll~~g-  112 (417)
T COG2223          42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI-LSMLLLLIPCLGLAF---A---VTYPST-WQLLVIG-  112 (417)
T ss_pred             cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH-HHHHHHHHHHHHHHH---H---ccCCch-HHHHHHH-
Confidence            445999999999999999999999999999999999988765 455554444432221   1   112233 2322222 


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHH
Q 018940          132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIF  211 (348)
Q Consensus       132 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~  211 (348)
                        .+.|++-+.+ ....++++...| ||+++.+.++.- .+|+|..+...+.++++...+.       ..|+....++.+
T Consensus       113 --ll~G~~GasF-av~m~~~s~~fP-~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~-------~~w~~~~~i~~~  180 (417)
T COG2223         113 --LLLGLAGASF-AVGMPNASFFFP-KEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGF-------LAWRNVAGIYVV  180 (417)
T ss_pred             --HHHhccccee-hcccccccccCC-hhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHH
Confidence              2455443332 224456777774 678999999887 7789988888887666654321       148888888888


Q ss_pred             HHHHHHHHHHhhcccccccccccCCchhH-HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhH
Q 018940          212 IGCCFVGIFLSRTEEPRLKMGLRGNSHAR-ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKAL  290 (348)
Q Consensus       212 i~~~~~ll~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~  290 (348)
                      ..++..++.++..+|.+..+++  .++.+ .+++..++||+.|.+++.|+....+..+...++|.|++++++++..+.+.
T Consensus       181 ~l~v~~v~~~~~~~d~p~~r~~--~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~  258 (417)
T COG2223         181 ALAIAAVLAWLGMNDVPEHRAS--VKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGL  258 (417)
T ss_pred             HHHHHHHHHHHHhCCChhhhcc--ccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHH
Confidence            7888788888888775432221  11112 56788999999999999999999999999999999999999999877665


Q ss_pred             HhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhcc
Q 018940          291 VPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP  338 (348)
Q Consensus       291 ~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~~  338 (348)
                      +.......+.+.-++.|++ ||+|.+  |+.....+.++++.......+
T Consensus       259 ~a~~f~~~g~l~Rp~GG~LsDR~Gg~--rv~~~~f~~~~~~~~~l~~~~  305 (417)
T COG2223         259 IAFLFPLIGALARPLGGWLSDRIGGR--RVTLAVFVGMALAAALLSLFL  305 (417)
T ss_pred             HHHHHHHHHHHHHhccchhhhhccch--hHHHHHHHHHHHHHHHHHccc
Confidence            5444334444455778888 999999  877777777777776665554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.85  E-value=1.5e-18  Score=164.29  Aligned_cols=257  Identities=16%  Similarity=0.053  Sum_probs=160.0

Q ss_pred             CChhHHHHHHHH-----HHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccc-hhHHHHH
Q 018940           56 LSPRGAAAVMLS-----GQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL-KVETISY  129 (348)
Q Consensus        56 ~s~~~~g~i~~~-----~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~-~~~~~~~  129 (348)
                      .++.+.+.+...     ..+...+++++.|+++||+||||.++ .+.+...++......  .+.    .... .+.....
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~-~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~   99 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLV-ITLLMMGIGTLLIGL--LPS----YATIGIWAPILL   99 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHH-HHHHHHHHHHHHHhh--CCC----hhhhHHHHHHHH
Confidence            556666665443     34445678999999999999998865 566666666543321  120    0000 0111112


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHH
Q 018940          130 CVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSS  209 (348)
Q Consensus       130 ~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~  209 (348)
                      .+...+.|++.+....+..+++.|..+ +++|++..++.+.+..+|..+++.+...+...++..  .....+||+.+.+.
T Consensus       100 ~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~--~~~~~~w~~~~~~~  176 (394)
T TIGR00883       100 LLARLIQGFSLGGEWGGAALYLAEYAP-PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD--ALLEWGWRIPFLVS  176 (394)
T ss_pred             HHHHHHHHhhccccccccHHHhhhcCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HhhccchHHHHHHH
Confidence            222235666666666667788888874 678999999999898888888776654433222210  00245899998877


Q ss_pred             HHHHHHHHHHHHhhccccccccc-ccCCchhHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccch
Q 018940          210 IFIGCCFVGIFLSRTEEPRLKMG-LRGNSHARISWAYWFKKIL--YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS  286 (348)
Q Consensus       210 ~~i~~~~~ll~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~  286 (348)
                      +++.++... .....+|++..++ ++++++.+++.++.+++++  ++......++..........+.|.|++++.|.+..
T Consensus       177 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  255 (394)
T TIGR00883       177 AVLVLIGLY-LRRNLEETPVFEKAQEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSAN  255 (394)
T ss_pred             HHHHHHHHH-HHHhcCCChhHHHHHhccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence            655544333 3344555432211 1111122334566777765  55555566666677777888999999888888877


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHH
Q 018940          287 AKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGV  325 (348)
Q Consensus       287 ~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~  325 (348)
                      +.+.......+..+++.++.+++ ||+|||  +.+..+..
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~~~~  293 (394)
T TIGR00883       256 SALLVLMLSLILFFITIPLSGALSDRIGRR--PVLIIFTV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchH--HHHHHHHH
Confidence            66666566667788888888987 999998  65554433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.84  E-value=5.1e-18  Score=157.90  Aligned_cols=256  Identities=18%  Similarity=0.179  Sum_probs=191.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcC
Q 018940           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (348)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~  110 (348)
                      +..+..........+..+.+.++.|.++.+.|++.+...+...+.+|+.|+++||+||||.+ ..+.....++...... 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~-~~~~~~~~~~~~~~~~-   83 (352)
T cd06174           6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVL-LLGLLLFALGSLLLAF-   83 (352)
T ss_pred             HHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhh-HHHHHHHHHHHHHHHH-
Confidence            34455555566667888888888899999999999999999999999999999999999864 5677776666654331 


Q ss_pred             cCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018940          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~  190 (348)
                        .      .+.....+.    ..+.+++.+....+..++..|..+ +|+|++..++.+....+|..+++.+.+.+..  
T Consensus        84 --~------~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--  148 (352)
T cd06174          84 --A------SSLWLLLVG----RFLLGLGGGALYPAAAALIAEWFP-PKERGRALGLFSAGFGLGALLGPLLGGLLAE--  148 (352)
T ss_pred             --h------ccHHHHHHH----HHHHHcccccccHhHHHHHHHhCC-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHH--
Confidence              1      122222222    235667777777888899999885 5789999999999999998887776655442  


Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q 018940          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQ  270 (348)
Q Consensus       191 ~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  270 (348)
                              ..+|++.+.+.+++.++..++..+. +                        |.++...+..++.........
T Consensus       149 --------~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------------~~~~~~~~~~~~~~~~~~~~~  195 (352)
T cd06174         149 --------SLGWRWLFLILAILGLLLALLLLFL-L------------------------RLLLLLALAFFLLSFGYYGLL  195 (352)
T ss_pred             --------HhhHHHHHHHHHHHHHHHHHHHHHH-H------------------------HHHHHHHHHHHHHHhHHHHHH
Confidence                    3468888887766666555444322 1                        555566666666677778888


Q ss_pred             HHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhH-HHHHHHHHHHHHHHhHhhcc
Q 018940          271 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKA-YYSAGGVLWVFCGAGILILP  338 (348)
Q Consensus       271 ~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~-~~~~g~~l~~v~~~~~~~~~  338 (348)
                      .+.|.|..+..|.+..+.+.......++.+++.++.+++ ||+|+|  + .+..+..+..++.+...+.+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~  263 (352)
T cd06174         196 TYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR--RLLLLIGLLLAALGLLLLALAP  263 (352)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhc
Confidence            899999998878888777777777778889999988887 999999  7 88888888888877666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.84  E-value=6e-18  Score=166.46  Aligned_cols=280  Identities=15%  Similarity=0.063  Sum_probs=171.2

Q ss_pred             HhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHH
Q 018940           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (348)
Q Consensus        25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~  104 (348)
                      ......++.+............++.+.++.|+|+.+.+++.+...+..++++++.|+++||+||||.+ ..+.+..+++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~   99 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAM-VISIVLFSVGT   99 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHH
Confidence            33455555555555555555666666666799999999999999999999999999999999998875 45666666665


Q ss_pred             HHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 018940          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (348)
Q Consensus       105 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~  184 (348)
                      .....         ..+.....+.    ..+.+++.+.......+++.|..+ +|+|++..+..+.+..+|..+++.+.+
T Consensus       100 ~~~~~---------~~~~~~l~~~----~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~  165 (496)
T PRK03893        100 LACGF---------APGYWTLFIA----RLVIGMGMAGEYGSSATYVIESWP-KHLRNKASGFLISGFSIGAVVAAQVYS  165 (496)
T ss_pred             HHHHH---------HhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43321         1123322222    235666666666677788888874 678999988888888888777665543


Q ss_pred             HHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-cCCchhHHHHHHHHHh-HHH----------
Q 018940          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFKK-ILY----------  252 (348)
Q Consensus       185 ~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~-~~~----------  252 (348)
                      .+.          +..+||+.+.+.+ +..+..++.....||++..+++ +++.+.++..+...++ +..          
T Consensus       166 ~l~----------~~~~w~~~f~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (496)
T PRK03893        166 LVV----------PVWGWRALFFIGI-LPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAA  234 (496)
T ss_pred             HHh----------ccCCHHHHHHHHH-HHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHH
Confidence            332          2458999887643 3333333334445654221111 1111001111111110 000          


Q ss_pred             --------------HH-----------------------------HHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhh
Q 018940          253 --------------YQ-----------------------------VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKA  289 (348)
Q Consensus       253 --------------~~-----------------------------~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~  289 (348)
                                    +.                             +.+..+...........++|.|++++.|.+..+.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g  314 (496)
T PRK03893        235 AALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVA  314 (496)
T ss_pred             HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHH
Confidence                          00                             00000000011113457899999888899887777


Q ss_pred             HHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHH
Q 018940          290 LVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA  332 (348)
Q Consensus       290 ~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~  332 (348)
                      .......++.+++.++.+++ ||+|+|  +.+..+..+..+..+
T Consensus       315 ~~~~~~~~~~~~g~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~  356 (496)
T PRK03893        315 NVLFFSGFGAAVGCCVGGFLGDWLGTR--KAYVCSLLISQLLII  356 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHH
Confidence            77777778889999999998 999999  777766655555443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.83  E-value=1.4e-19  Score=168.01  Aligned_cols=315  Identities=12%  Similarity=0.058  Sum_probs=229.6

Q ss_pred             CCCCCCCCCCchHhhHHhhhhhHHHHHHHHHH-HHHHHHHHhh-CC---C----hhHHHHHHHHHHHHHHhhhhhhHhhh
Q 018940           13 NDDSFTQPVGRWSVLYYGSGHMLNDITAACWF-TYLLLFLTDI-GL---S----PRGAAAVMLSGQIADGFATIFIGELI   83 (348)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~l~~~~~~~-g~---s----~~~~g~i~~~~~i~~~i~~p~~G~l~   83 (348)
                      ++++..++...+....|.+.+.+.+....++. .+.|+|+++. +.   +    ....|...+++.+..++..|+.|.++
T Consensus         3 ~~~~~~~~~~~~~~~sWilyD~~~~p~~~ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~ia   82 (438)
T COG2270           3 GPMRSRMPKLRKGIKSWILYDWGSSPFFAIVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIA   82 (438)
T ss_pred             chhhhhcccccccceeEEEeeccCCceeeeeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            44555455555666788888888777765554 5678899874 22   3    35668899999999999999999999


Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchh
Q 018940           84 DRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVV  163 (348)
Q Consensus        84 Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~  163 (348)
                      |+.|+||+++.....+..++...+++  .|     ..+.++..+.+   .++..+++...++.++++.+++++ +++-++
T Consensus        83 D~~g~Rk~~~~~f~~i~i~~~~~L~~--i~-----~~s~~~~~l~~---~il~~i~~~~s~Vfyds~L~~~~~-k~~~~r  151 (438)
T COG2270          83 DYPGPRKKFFGFFTAIGIISTFLLWF--IP-----PGSYLLLLLLF---LILASIGFEFSNVFYDSMLPRLTT-KDNMGR  151 (438)
T ss_pred             ccCCCcchHHHHHHHHHHHHHHHHHH--hC-----CCchHHHHHHH---HHHHHHhcchhheehhhHhhhhcC-ccccCc
Confidence            99999999987777776777666664  34     11233222221   236778888889999999999884 455677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc--c-------CCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccc-cc
Q 018940          164 LTSCRNAFTMVANLSLYAIAFIVFSVS--T-------AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-GL  233 (348)
Q Consensus       164 ~~~~~~~~~~ig~~~~~~~~~~~~~~~--~-------~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~-~~  233 (348)
                      .++..+..+.+|+.+...........-  .       +.+.+ +...-|..+.++++..++..+-.+..+||.++.. ++
T Consensus       152 iS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~  230 (438)
T COG2270         152 ISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPA-DGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPP  230 (438)
T ss_pred             ccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcc-ccccchhHHHHHHHHHHHHHhHHHhcccccccccccc
Confidence            777777777788776554432211110  0       00011 2345688888898888888888888888865322 11


Q ss_pred             -----cCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHH
Q 018940          234 -----RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE  308 (348)
Q Consensus       234 -----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  308 (348)
                           +.-++.++++|++.+++......+..++.+-+.++..+.-..|-.+++|++..+..++.....+.+++|+++.|+
T Consensus       231 ~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~  310 (438)
T COG2270         231 PTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGF  310 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 112344567788888888888888888888899999999999999999999988888888888999999999999


Q ss_pred             H-HHhhhhhhHHHHHHHHHHHHHHHhHhhccCCc
Q 018940          309 M-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNM  341 (348)
Q Consensus       309 l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~~~~~  341 (348)
                      + +|+|.|  +++..++++..+.++-.++.....
T Consensus       311 Ld~rfg~k--~vl~~~lvi~~~~~~~~~~~~~~~  342 (438)
T COG2270         311 LDERFGSK--PVLMIGLVILSIAALYLIFLEGEL  342 (438)
T ss_pred             HHHHhCCc--eeehHHHHHHHHHHHHHHHccccH
Confidence            9 999999  999999998888887777765443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.83  E-value=1.6e-18  Score=169.37  Aligned_cols=240  Identities=11%  Similarity=0.111  Sum_probs=174.2

Q ss_pred             hhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHH
Q 018940           53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVF  132 (348)
Q Consensus        53 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  132 (348)
                      |.++++.+.|.+.+...+...+++++.|+++||+||||.+. .+.+...+...+...   .    ...+....    .+.
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~-~~~~~~~~~~~~~~~---~----~~~~~~~l----~~~  137 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIG-IGMFLSSVISIVIPW---A----AGGGIALV----VFC  137 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhH-HHHHHHHHHHHHHHH---H----HHcCchHH----HHH
Confidence            34889999999999999999999999999999999998754 455555554432210   0    01122222    222


Q ss_pred             HHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchh-hHHHHHHHHHHH
Q 018940          133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE-NQYRWIAYSSIF  211 (348)
Q Consensus       133 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~i~~~  211 (348)
                      ..+.|++.+...+...+++++..+ +++|+++.++.+.+..+|..+++.+.+.+.          .. .+||+.+++.++
T Consensus       138 r~~~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~----------~~~~gw~~~f~i~~~  206 (465)
T TIGR00894       138 RVIQGLAQGSVSPATHKIIVKWAP-PKERSRLLGMSTSGFQLGTFIFLPISGWLC----------ESWGGWPMIFYVFGI  206 (465)
T ss_pred             HHHHHHhcccchhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hccCCCCeehhhhhH
Confidence            346777777777778888999885 678999999998888888887665543332          13 389999999888


Q ss_pred             HHHHHHHHHHhhcccccccccc--c-----------C---CchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 018940          212 IGCCFVGIFLSRTEEPRLKMGL--R-----------G---NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF  275 (348)
Q Consensus       212 i~~~~~ll~~~~~~e~~~~~~~--~-----------~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  275 (348)
                      ++++..++.+...+|++...++  +           +   +++.+.++++.++++.++...+..++.....+...+|+|.
T Consensus       207 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~  286 (465)
T TIGR00894       207 VGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPT  286 (465)
T ss_pred             HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887777766666553221100  0           0   0111234788999999888888888888888888999999


Q ss_pred             HHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhh
Q 018940          276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQR  315 (348)
Q Consensus       276 yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r  315 (348)
                      |+.+..|.+..+.+....+..++.+++.++.+++ ||+++|
T Consensus       287 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~  327 (465)
T TIGR00894       287 FISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSS  327 (465)
T ss_pred             HHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999988777777667778888999999998 988755

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.82  E-value=2.7e-17  Score=161.08  Aligned_cols=304  Identities=13%  Similarity=0.048  Sum_probs=174.2

Q ss_pred             hHhhHHhhhhhHHHHHHHHHHHHHHHHHHhh--------CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHH
Q 018940           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI--------GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGA   95 (348)
Q Consensus        24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~   95 (348)
                      +-.+.-.++.+........+.+..+.+.+++        +.++.+.|++.++..+..+++++++|+++||+||||.++ .
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~-~   90 (479)
T PRK10077         12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK-I   90 (479)
T ss_pred             HHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-H
Confidence            3344444555444443444444444443333        788999999999999999999999999999999999865 5


Q ss_pred             HHHHHHHHHHHHhcCcCCCcccC-cccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHH
Q 018940           96 GSVLVAVSFSSVFGGCMPCRILS-TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV  174 (348)
Q Consensus        96 ~~~~~~i~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~i  174 (348)
                      +..+.+++......+  ...+.. ..+.......+.+...+.|++.+...+...++++|..+ +++|+++.+..+.+..+
T Consensus        91 ~~~l~~i~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~~  167 (479)
T PRK10077         91 AAVLFFISALGSAWP--EFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAP-AHIRGKLVSFNQFAIIF  167 (479)
T ss_pred             HHHHHHHHHHHHHhh--ccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCC-hhhhhHHHHHHHHHHHH
Confidence            556655554332210  000000 00111111122233346788888888888899999986 57899999998888888


Q ss_pred             HHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccc---ccc-cC----------CchhH
Q 018940          175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK---MGL-RG----------NSHAR  240 (348)
Q Consensus       175 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~---~~~-~~----------~~~~~  240 (348)
                      |..++..++..+....... . ....|||+.+.+.++..++..+. .+++||++..   +++ ++          ..+.+
T Consensus       168 G~~~~~~~~~~~~~~~~~~-~-~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~  244 (479)
T PRK10077        168 GQLVVYFVNYFIARSGDAS-W-LNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRKIMGNTLAT  244 (479)
T ss_pred             HHHHHHHHHHHHhccCccc-c-cccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHH
Confidence            8777655433322110000 0 02458999998887777665443 5567775421   000 00          00001


Q ss_pred             ---HHHHHHHHhH-----HHHHHH----HH-----HHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHH
Q 018940          241 ---ISWAYWFKKI-----LYYQVA----LV-----YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVS  303 (348)
Q Consensus       241 ---~~~~~~~~~~-----~~~~~~----l~-----~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~  303 (348)
                         +..++..+++     .++...    ..     .+......+....|.|.+. +..|.+............+..+++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~~  323 (479)
T PRK10077        245 QALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIF-KTLGASTDIALLQTIIVGVINLTFT  323 (479)
T ss_pred             HHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHH-HHcCCCCchHHHHHHHHHHHHHHHH
Confidence               1112222211     111000    00     0101111222333445444 4567765544444445566778888


Q ss_pred             HHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          304 ILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       304 ~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      ++.+++ ||+|||  +.+..+..+.+++.+.+...
T Consensus       324 ~~~g~l~dr~g~r--~~~i~~~~~~~v~~~~l~~~  356 (479)
T PRK10077        324 VLAIMTVDKFGRK--PLQIIGALGMAIGMFSLGTA  356 (479)
T ss_pred             HHHHHHHHHhcCh--HHHHHhHHHHHHHHHHHHHH
Confidence            989987 999999  88888888888877665443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.81  E-value=6.6e-17  Score=164.54  Aligned_cols=170  Identities=13%  Similarity=-0.028  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccc
Q 018940           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (348)
Q Consensus        43 ~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~  122 (348)
                      +...+|....+.|++..+.|++.++..+..+++++++|+++||+|||+.++ .+.++.+++..+...  .+       +.
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~li-i~lil~~i~~ll~af--a~-------s~  255 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLL-ICLSVNGFFAFFSSF--VQ-------GY  255 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH-HHHHHHHHHHHHHHH--Hh-------hH
Confidence            334445454556999999999999999999999999999999999998865 455555544433221  11       22


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---ccchh
Q 018940          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT---HADLE  199 (348)
Q Consensus       123 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~---~~~~~  199 (348)
                      ....+    ...+.+++.+...+...+++.|..+ +++|++..++.+.+..+|.++++.++..++..++...   .....
T Consensus       256 ~~llv----~R~l~G~g~g~~~p~~~~~isE~~p-~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~  330 (742)
T TIGR01299       256 GFFLF----CRLLSGFGIGGAIPIVFSYFAEFLA-QEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQF  330 (742)
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccccc
Confidence            22222    2246777777777778889999885 5789999998888888888887766555443222100   00013


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018940          200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (348)
Q Consensus       200 ~g~~~~~~i~~~i~~~~~ll~~~~~~e~~  228 (348)
                      .+||+.+++.++..++ .++..+++||++
T Consensus       331 ~gWR~l~~i~~lp~ll-~ll~~~~lPESP  358 (742)
T TIGR01299       331 HSWRVFVIVCAFPCVF-AIGALTFMPESP  358 (742)
T ss_pred             ccHHHHHHHHHHHHHH-HHHHHHHcCCCH
Confidence            4799988877665544 455566788863

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.80  E-value=2.4e-17  Score=159.87  Aligned_cols=257  Identities=15%  Similarity=0.077  Sum_probs=154.9

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHH
Q 018940           56 LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI  135 (348)
Q Consensus        56 ~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  135 (348)
                      .+..+.|++.++..+..++++|++|+++||+||||.++ .+..+.+++..+...  .+    ...+.+...+.    ..+
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~----r~l  136 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL-IIALLFVIGAILMGL--AA----FALSVEMLIVG----RVL  136 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH-HHHHHHHHHHHHHHH--hc----cccchHHHHHH----HHH
Confidence            45899999999999999999999999999999988764 566666666543321  11    11121122222    236


Q ss_pred             HHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHH
Q 018940          136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC  215 (348)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  215 (348)
                      .+++.+.......++++|..+ +++|++..++.+.+..+|..+++.+.  ......     ....+||+.+.+.++..++
T Consensus       137 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~--~~~~~~-----~~~~~w~~~f~~~~~~~~~  208 (481)
T TIGR00879       137 LGIGVGIASALVPMYLSEIAP-KALRGALTSLYQLAITFGILVAYGFG--SGKVSL-----NNTLGWRIPLGLQLIPAGL  208 (481)
T ss_pred             HHhhhhHHHhHHHHHHHccCC-hhhhhhhhhHHHHHHHHHHHHHHHHH--HHhhcC-----CCCccHHHHHHHHHHHHHH
Confidence            777777777778889999885 67899999998888888887765543  000111     1246899999886554444


Q ss_pred             HHHHHHhhccccccc---ccc--c-----------CC-c-hhHH------------------HHHHHHHh-----HHHHH
Q 018940          216 FVGIFLSRTEEPRLK---MGL--R-----------GN-S-HARI------------------SWAYWFKK-----ILYYQ  254 (348)
Q Consensus       216 ~~ll~~~~~~e~~~~---~~~--~-----------~~-~-~~~~------------------~~~~~~~~-----~~~~~  254 (348)
                       .++..+++||++..   +++  +           ++ + +..+                  .+++.++.     +....
T Consensus       209 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (481)
T TIGR00879       209 -LFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFL  287 (481)
T ss_pred             -HHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHH
Confidence             34444556664210   000  0           00 0 0000                  01122221     11111


Q ss_pred             H-HHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHH
Q 018940          255 V-ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA  332 (348)
Q Consensus       255 ~-~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~  332 (348)
                      . .+..+......+....|.| ++.++.|.+..+.+.......++.+++.++.+++ ||+|||  +.+..++++.+++.+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~  364 (481)
T TIGR00879       288 GVVLQWFQQFTGINAIMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR--PLLLIGAAGMAICLF  364 (481)
T ss_pred             HHHHHHHHHHhCCeehHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHH
Confidence            1 1222222222233344445 4445568877655556566667788899989988 999999  877777777777665


Q ss_pred             hHh
Q 018940          333 GIL  335 (348)
Q Consensus       333 ~~~  335 (348)
                      .+.
T Consensus       365 ~~~  367 (481)
T TIGR00879       365 VLG  367 (481)
T ss_pred             HHH
Confidence            554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.80  E-value=3.4e-17  Score=176.57  Aligned_cols=297  Identities=12%  Similarity=-0.045  Sum_probs=181.6

Q ss_pred             HhhHHhhhhhHHHHHHHHHHHHHHHHH-HhhCC--ChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHH
Q 018940           25 SVLYYGSGHMLNDITAACWFTYLLLFL-TDIGL--SPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA  101 (348)
Q Consensus        25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~-~~~g~--s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~  101 (348)
                      +...+.+..+...+........+..++ .+.+.  +....+++.++..+...+++|++|+++||+||||.++ .+..+.+
T Consensus        10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~-~~~~~~~   88 (1146)
T PRK08633         10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIR-IVKLFEV   88 (1146)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHH-HHHHHHH
Confidence            333444444454444433333333333 33444  4556799999999999999999999999999998865 4443333


Q ss_pred             HHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHH
Q 018940          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (348)
Q Consensus       102 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~  181 (348)
                      +...+...  ..    ...+.+..    .+..++.+++.+...++..++++++.+ +++|+++.++.+.+..+|.++++.
T Consensus        89 ~~~~~~~~--~~----~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~ig~~lg~~  157 (1146)
T PRK08633         89 GLTLLIVL--AY----YLGWFWLA----FAVTFLLGAQSAIYSPAKYGIIPELVG-KENLSRANGLLEAFTIVAILAGTA  157 (1146)
T ss_pred             HHHHHHHH--HH----HHccHHHH----HHHHHHHHHHHHhhchHHHhhhHHhcC-cccchhhhhHHHHHHHHHHHHHHH
Confidence            33221110  00    01122222    222236777778777888899999985 578999999999999999888887


Q ss_pred             HHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc---cC----CchhHHHHHHHHHhHHHHH
Q 018940          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---RG----NSHARISWAYWFKKILYYQ  254 (348)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~  254 (348)
                      +++.+.......+ .+...+|++.+.+.++...+..++..+..||.+....+   ++    ....++.++.++++|.++.
T Consensus       158 l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  236 (1146)
T PRK08633        158 LFSFLFESVNGNT-PSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWL  236 (1146)
T ss_pred             HHHHHHHhhcccc-ccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHH
Confidence            7666654311000 00011334443333333333333444455664322111   11    1123445677888888776


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhcccccch-hhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHH
Q 018940          255 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQS-AKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA  332 (348)
Q Consensus       255 ~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~-~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~  332 (348)
                      ..+...+..........++|.|+.+..|.+.. ..+++.....++.+++.++.+++ ||++++  +.+.++.++.+++.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~--~~~~~~~~~~~~~~~  314 (1146)
T PRK08633        237 AIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL--GLVPLGALGLALSLF  314 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc--cchhHHHHHHHHHHH
Confidence            66655555566667778999999999999877 66766666777888888888887 888877  666666666665554


Q ss_pred             hHhh
Q 018940          333 GILI  336 (348)
Q Consensus       333 ~~~~  336 (348)
                      .+.+
T Consensus       315 ~~~~  318 (1146)
T PRK08633        315 LLPT  318 (1146)
T ss_pred             HHHH
Confidence            4443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.80  E-value=1.7e-17  Score=160.88  Aligned_cols=265  Identities=11%  Similarity=0.065  Sum_probs=198.3

Q ss_pred             CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHH
Q 018940           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (348)
Q Consensus        55 g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  134 (348)
                      +.|..+-|++.+.......+++.+.|+++||+|-||++. .+.+..+++..+     +|..  ...+....    .+..+
T Consensus        69 ~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~-~~~~~sa~~t~l-----~P~a--a~~~~~~~----~~~R~  136 (466)
T KOG2532|consen   69 DWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFF-ISGLISALLTLL-----TPLA--ASIGFYLL----LVLRF  136 (466)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHH-HHHHHHHHHHHH-----HHHH--HHhcchhh----HHHHH
Confidence            678899999999999999999999999999999999865 455555555432     2421  11222222    22334


Q ss_pred             HHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHH
Q 018940          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC  214 (348)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~  214 (348)
                      +.|++.+...++...+....+| ++||++..++...+..+|.++...++    +.+..     ...||+++|++.+++++
T Consensus       137 lqGl~~g~~~pa~~~i~~~W~P-~~Ers~~~ail~~g~q~g~v~~mp~s----g~lc~-----s~~GW~sifY~~g~~g~  206 (466)
T KOG2532|consen  137 LQGLGQGVLFPAIGSILAKWAP-PNERSTFIAILTAGSQLGTIITMPVS----GLLCE-----SSLGWPSIFYVFGIVGL  206 (466)
T ss_pred             HhHHHHhHHHhhhhceeeeECC-HHHHHHHHHHHHHHHHHHHHHHHHhH----HHHhc-----cCCCCchHHHHHHHHHH
Confidence            7788888888888888888885 78999999999989888877754443    33331     24699999999999999


Q ss_pred             HHHHHHHhhccccccccc-----c-------cC----CchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 018940          215 CFVGIFLSRTEEPRLKMG-----L-------RG----NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI  278 (348)
Q Consensus       215 ~~~ll~~~~~~e~~~~~~-----~-------~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~  278 (348)
                      ++.++.+++..|++.+.+     |       +.    +++.+.+++++++++.+|.+.+..++.+.+.+....|.|+|+.
T Consensus       207 i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~  286 (466)
T KOG2532|consen  207 IWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLK  286 (466)
T ss_pred             HHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999998888776433211     0       00    1112457999999999999999999999999999999999999


Q ss_pred             hcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhh------hH-HHHHHHHHHHHHHHhHhhccCCc
Q 018940          279 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL------KA-YYSAGGVLWVFCGAGILILPMNM  341 (348)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~------k~-~~~~g~~l~~v~~~~~~~~~~~~  341 (348)
                      |.+|++..+.+++..+..+...+..++.+.+ ||+-+|.      +| .=.++....++..+.+.+.+.+.
T Consensus       287 ~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~  357 (466)
T KOG2532|consen  287 EVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEH  357 (466)
T ss_pred             HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCc
Confidence            9999999988988888888889999889987 8876631      23 33444555666666666666444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.80  E-value=5.3e-18  Score=171.22  Aligned_cols=287  Identities=9%  Similarity=0.018  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccC---
Q 018940           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS---  118 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~---  118 (348)
                      ....-++..-++++++..+.|++.+.+.+..++..++.|+++||.||||. +..+.++++++..+..   +|..+..   
T Consensus        51 ~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~-i~~g~ll~~lg~ll~a---lphf~~~~y~  126 (633)
T TIGR00805        51 LVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV-IGIGCAIMGLGSFLLS---LPHFLSGRYS  126 (633)
T ss_pred             HHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceE-EEecHHHHHHHHHHHh---ChHHhcCCcc
Confidence            33344444444569999999999999999999999999999999999875 5678888888875433   2310000   


Q ss_pred             ---------------------c-----------------ccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCccc
Q 018940          119 ---------------------T-----------------STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS  160 (348)
Q Consensus       119 ---------------------~-----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  160 (348)
                                           .                 .+.......+.+..++.|+|.+...+...+++.|..+ +++
T Consensus       127 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~-~~~  205 (633)
T TIGR00805       127 YSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK-SKN  205 (633)
T ss_pred             ccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC-ccc
Confidence                                 0                 0000011122233356777777777777789999885 678


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc----------ccchh--hHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018940          161 RVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT----------HADLE--NQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (348)
Q Consensus       161 R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~----------~~~~~--~g~~~~~~i~~~i~~~~~ll~~~~~~e~~  228 (348)
                      |++..++.+.+..+|..++..+++.+...+.+..          ..|..  -+|+..|++.++++++.++..+++.++.+
T Consensus       206 ~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp  285 (633)
T TIGR00805       206 SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALP  285 (633)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccC
Confidence            9999999999999998888877766665432100          01111  14888888888888777665544333321


Q ss_pred             cc---cc----cc------CC----------chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccc
Q 018940          229 LK---MG----LR------GN----------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQ  285 (348)
Q Consensus       229 ~~---~~----~~------~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~  285 (348)
                      .+   .+    ++      ++          ++..+.++.+++||.++...+..++.....++..+|+|.|++++.|+++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~  365 (633)
T TIGR00805       286 KEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISS  365 (633)
T ss_pred             CcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            11   00    00      00          0112345778999998888888888888889999999999999999998


Q ss_pred             hhhhHHhHHHHH-HHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHh
Q 018940          286 SAKALVPAIIYI-CSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAG  333 (348)
Q Consensus       286 ~~~~~~~~~~~~-~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~  333 (348)
                      .+.+++.....+ +.++|.++.+++ ||++.+.|+....++++.+++.+.
T Consensus       366 ~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       366 AEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            877765544443 457888999997 999977667888887777766533

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.79  E-value=5.5e-17  Score=158.31  Aligned_cols=244  Identities=11%  Similarity=-0.068  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccc
Q 018940           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (348)
Q Consensus        43 ~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~  122 (348)
                      ...+++.+.++.|.|..+.+++.+...+...+..|+.|+++||+||||.+ +.+.....++......       .  .+.
T Consensus        38 ~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l-~~~~~~~~~~~~~~~~-------~--~~~  107 (455)
T TIGR00892        38 VTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVV-IAGGLLASLGMILASF-------S--SNV  107 (455)
T ss_pred             hhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHH-HhhHHHHHHHHHHHHH-------h--hhH
Confidence            34556666666799999999999999999999999999999999999875 4566555555543211       1  122


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHH
Q 018940          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY  202 (348)
Q Consensus       123 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~  202 (348)
                      ........   .+.+++.+....+..+.+.+..  +++|+++.++.+.+..+|..+++.+.+.+.          +..||
T Consensus       108 ~~l~~~~~---~l~G~~~~~~~~~~~~~~~~~~--~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~----------~~~gw  172 (455)
T TIGR00892       108 IELYLTAG---FITGLGLAFNFQPSLTMLGKYF--YRRRPLANGLAMAGSPVFLSTLAPLNQYLF----------ESFGW  172 (455)
T ss_pred             HHHHHHHH---HHHHhcchhhhhHHHHHHHHHH--HhhHHHHHHHHHhcccHHHHHHHHHHHHHH----------HHhCh
Confidence            22211111   2445666655456666777765  368999999988888888776654443332          24589


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccc----ccc--c----c--CCc----h---hHHHH--HHHHHhHHHHHHHHHHHH
Q 018940          203 RWIAYSSIFIGCCFVGIFLSRTEEPRL----KMG--L----R--GNS----H---ARISW--AYWFKKILYYQVALVYML  261 (348)
Q Consensus       203 ~~~~~i~~~i~~~~~ll~~~~~~e~~~----~~~--~----~--~~~----~---~~~~~--~~~~~~~~~~~~~l~~~~  261 (348)
                      |+.+++.+++.++..+..++..++++.    +.+  +    +  .++    .   ....+  .+.+++|.++...+..++
T Consensus       173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (455)
T TIGR00892       173 RGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVI  252 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHH
Confidence            999999888776655544444432211    000  0    0  000    0   00011  146788888776666666


Q ss_pred             HHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHh
Q 018940          262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWT  312 (348)
Q Consensus       262 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~  312 (348)
                      ..........|+|.|.++ .|.+..+.+....+..++.+++.++.+++ ||.
T Consensus       253 ~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       253 MFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             HHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            666777778899999876 58887777766666677778888888887 763

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.78  E-value=3.4e-16  Score=154.14  Aligned_cols=297  Identities=15%  Similarity=0.089  Sum_probs=195.9

Q ss_pred             CCCCchHhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHH
Q 018940           19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV   98 (348)
Q Consensus        19 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~   98 (348)
                      .+++-+....+..+++..++...+...-++.+..+..-|+..+|++.....+...+.+++.|.++||+.|||.++. +-+
T Consensus         5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~-~~~   83 (524)
T PF05977_consen    5 APLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILIL-SQL   83 (524)
T ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH-HHH
Confidence            4455555555556666666666666555666666777889999999999999999999999999999999998654 443


Q ss_pred             HHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHH
Q 018940           99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS  178 (348)
Q Consensus        99 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~  178 (348)
                      ..++....+..  ..  .....+.+ ..+.   +.++.+.+.+...++.++.++++.+ +||-.+++++.+...+++.++
T Consensus        84 ~~~~~~~~L~~--l~--~~~~~~~~-~Ll~---~~fl~g~~~a~~~PA~~A~ip~lV~-~~~L~~A~al~s~~~niar~i  154 (524)
T PF05977_consen   84 LRALVALLLAV--LA--FFGLLSPW-LLLI---LTFLLGIGSAFFNPAWQAIIPELVP-KEDLPAANALNSISFNIARII  154 (524)
T ss_pred             HHHHHHHHHHH--HH--HhCcCCHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHHHHHhc
Confidence            33332221110  00  01112222 2222   2246778888888899999999985 567788888888888888888


Q ss_pred             HHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccc-cc--CCchhHHHHHHHHHhHHHHHH
Q 018940          179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LR--GNSHARISWAYWFKKILYYQV  255 (348)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~  255 (348)
                      ++.+++.++..+          |-.+.|.+.++ +.+..+......|.+..+++ ++  -.++.++.++.+.+||.++.+
T Consensus       155 GPalgG~Lva~~----------G~~~~f~inal-sfl~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~  223 (524)
T PF05977_consen  155 GPALGGILVAFF----------GAAAAFLINAL-SFLISILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSV  223 (524)
T ss_pred             cchHHHHHHHHH----------HHHHHHHHHHH-HHHHHHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHH
Confidence            887777776543          33445555433 33333333333333221111 11  123455667777778877665


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhH
Q 018940          256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI  334 (348)
Q Consensus       256 ~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~  334 (348)
                      .+..++.+.........+|.+..+.+|.++...+++..+.++++++|+++.+++ +|++++  +.+..+.++.+++++.+
T Consensus       224 l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~--~lv~~~~~~~a~~~~~l  301 (524)
T PF05977_consen  224 LLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR--RLVLLASLLFALALLLL  301 (524)
T ss_pred             HHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--hhhHHHHHHHHHHHHHH
Confidence            554444444444556678999999999988777777777888999999999988 777776  77788888777777666


Q ss_pred             hhcc
Q 018940          335 LILP  338 (348)
Q Consensus       335 ~~~~  338 (348)
                      .+.+
T Consensus       302 al~~  305 (524)
T PF05977_consen  302 ALSP  305 (524)
T ss_pred             hcch
Confidence            5543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.78  E-value=5.4e-16  Score=153.15  Aligned_cols=267  Identities=13%  Similarity=0.088  Sum_probs=159.6

Q ss_pred             CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHH
Q 018940           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (348)
Q Consensus        55 g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  134 (348)
                      +.+..+.+++.+...+...++++++|+++||+|||+.++ .+.+...++..+...  .+    ...+.. ....+.+...
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~-~~~~~~~v~~~~~~~--~~----~~~~~~-~~~~~~~~r~  123 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG-MELIIMIIATVASGL--SP----GSSPKS-VMATLCFWRF  123 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHH--cc----Ccccch-HHHHHHHHHH
Confidence            356678899999999999999999999999999998764 555555555543321  12    001110 0111222334


Q ss_pred             HHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccC----Ccc-c--------chhhH
Q 018940          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA----KTH-A--------DLENQ  201 (348)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~----~~~-~--------~~~~g  201 (348)
                      +.|++.+....+...++.|..| +++|++..++.+....+|..++..+...+...+..    ..+ +        ..+.+
T Consensus       124 l~G~~~g~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (502)
T TIGR00887       124 WLGVGIGGDYPLSAIITSEFAT-KKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYM  202 (502)
T ss_pred             HHHHHHhhhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhccc
Confidence            6778888877788899999985 68999999999888888888877665544332211    000 0        01247


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccc-----cccc----------------CC----------chhHHHHHHHHHhH
Q 018940          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLK-----MGLR----------------GN----------SHARISWAYWFKKI  250 (348)
Q Consensus       202 ~~~~~~i~~~i~~~~~ll~~~~~~e~~~~-----~~~~----------------~~----------~~~~~~~~~~~~~~  250 (348)
                      ||+.+.+.++.+++ ..+..+++||+++.     ++++                ++          ++.+.+++++++++
T Consensus       203 WR~~~~~~~ip~~i-~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  281 (502)
T TIGR00887       203 WRILIGFGAVPALL-ALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHF  281 (502)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHH
Confidence            99999766555544 44455678886320     1000                00          00112466676532


Q ss_pred             ---HH-HHH---HHHHHHHHHHHHhhhHHHHHHHhhcccccchhhh-----------H-HhHHHHHHHHHHHHHHHHH-H
Q 018940          251 ---LY-YQV---ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKA-----------L-VPAIIYICSFIVSILLQEM-A  310 (348)
Q Consensus       251 ---~~-~~~---~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~-----------~-~~~~~~~~~i~g~~~~~~l-~  310 (348)
                         +. +..   ....+......++...|.|.++++ .|++....+           . ...+..++.+++.++.+++ |
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d  360 (502)
T TIGR00887       282 FKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVD  360 (502)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               22 211   122333344556677788888864 566532110           0 1222334556677888887 9


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHhH
Q 018940          311 WTGQRLKAYYSAGGVLWVFCGAGI  334 (348)
Q Consensus       311 r~g~r~k~~~~~g~~l~~v~~~~~  334 (348)
                      |+|||  +.+..+.++..+++..+
T Consensus       361 r~gRR--~~l~~~~~~~~~~~~~l  382 (502)
T TIGR00887       361 IIGRK--PIQLMGFFILTVLFFVL  382 (502)
T ss_pred             hhcch--hHHHHHHHHHHHHHHHH
Confidence            99999  77777766655554433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00889 2A0110 nucleoside transporter

Probab=99.78  E-value=3.7e-16  Score=150.82  Aligned_cols=266  Identities=9%  Similarity=-0.007  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCC
Q 018940           36 NDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC  114 (348)
Q Consensus        36 ~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~  114 (348)
                      ....+....+++++|+++. |+|..++|++.++..+...+++|++|+++||+||||+.+..+....++.......     
T Consensus        14 ~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~-----   88 (418)
T TIGR00889        14 QWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ-----   88 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-----
Confidence            3445557779999999885 9999999999999999999999999999999987665555555555444432221     


Q ss_pred             cccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhh----hh----hcccCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSM----VN----CITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (348)
Q Consensus       115 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~----~~----~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~  186 (348)
                          ..+.......+.    +.+++.+.......++    ..    |... +..|.+..+      .+|..+++.+.+.+
T Consensus        89 ----~~~~~~~~~~~~----l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~-~~~~~r~~G------~lG~~ig~~l~g~l  153 (418)
T TIGR00889        89 ----VTTPAGMFPVLL----ANSLAYMPTIALTNSISYANLPQAGLDVVT-DFPPIRVMG------TIGFIAAMWAVSLL  153 (418)
T ss_pred             ----hcCHHHHHHHHH----HHHHHHccHHHHHHHHHHHHHhhcCCCchh-cCCCeeeeh------hHHHHHHHHHHHHh
Confidence                112222222222    3334333222222222    21    2221 223444332      34444444333222


Q ss_pred             HHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhH----HHHHHHHHhHHHHHHHHHHHHH
Q 018940          187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR----ISWAYWFKKILYYQVALVYMLT  262 (348)
Q Consensus       187 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~  262 (348)
                          .      ....|+. +++.+++.++..++ .+.+||+++++++ ++.+.+    ...++++|||+++.+.+..++.
T Consensus       154 ----~------~~~~~~~-f~~~~~~~~~~~~~-~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  220 (418)
T TIGR00889       154 ----D------IELSNIQ-LYITAGSSALLGVF-ALTLPDIPVAKST-AKMSIKVMLGLDAFILFKNKRMAIFFFFSMLL  220 (418)
T ss_pred             ----c------ccchhHH-HHHHHHHHHHHHHH-HhcCCCCCCCccc-cccCHHHHhhhhHHHHhcCCCeeeHHHHHHHH
Confidence                1      1123433 44555555554443 4567775322211 111111    1235678888877666666665


Q ss_pred             HHHHHhhhHHHHHHHhhccccc--------chhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHh
Q 018940          263 RLVVNVSQAYLAFYVINDLRMG--------QSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAG  333 (348)
Q Consensus       263 ~~~~~~~~~~~~~yl~~~~~~~--------~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~  333 (348)
                      .........+++.|+++. +.+        .++.+....+..+..+++.+..+++ ||+|+|  +.+..+.++..++...
T Consensus       221 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r--~~l~~~~~~~~v~~~l  297 (418)
T TIGR00889       221 GAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK--KVMLLSLVAWALRFGF  297 (418)
T ss_pred             HhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHH
Confidence            555556667888888764 322        2344555555566777788888887 999999  8899998888887655


Q ss_pred             Hhhc
Q 018940          334 ILIL  337 (348)
Q Consensus       334 ~~~~  337 (348)
                      +...
T Consensus       298 ~~~~  301 (418)
T TIGR00889       298 FAYG  301 (418)
T ss_pred             HHHc
Confidence            5543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.77  E-value=1.7e-16  Score=171.22  Aligned_cols=247  Identities=12%  Similarity=-0.035  Sum_probs=165.0

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHH--HHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHH
Q 018940           58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG--AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI  135 (348)
Q Consensus        58 ~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~--~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  135 (348)
                      ....++..+++.+..++++|+.|+++||+||||.+..  ...+.........+.         ..+.+..++    ..++
T Consensus        51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~---------~~s~~~l~~----~~~l  117 (1140)
T PRK06814         51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH---------LNSVPLLFA----ALFL  117 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH---------HhhHHHHHH----HHHH
Confidence            3567888889999999999999999999999986432  111111111111110         012332222    2246


Q ss_pred             HHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHH
Q 018940          136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC  215 (348)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  215 (348)
                      .+++.+...+...++++++.+ +++|++++++.+.+.++|.++++.+++.++.          ..+|++.+...++.. +
T Consensus       118 ~gi~~a~~~p~~~a~l~~~~~-~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~----------~~~~~~~~~~~~~~~-~  185 (1140)
T PRK06814        118 MGIHSALFGPIKYSILPDHLN-KDELLGANALVEAGTFIAILLGTIIGGLATI----------SGNFVILVALLMGIA-V  185 (1140)
T ss_pred             HHHHHHhhchHHHHhhHhhcC-ccccchhhHHHHHHHHHHHHHHHHHHHHHHh----------ccccHHHHHHHHHHH-H
Confidence            778888888888999999985 5789999999999999999988777666553          347888774443333 3


Q ss_pred             HHHHHHhhcccccccccc-cCC----chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhH
Q 018940          216 FVGIFLSRTEEPRLKMGL-RGN----SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKAL  290 (348)
Q Consensus       216 ~~ll~~~~~~e~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~  290 (348)
                      ..++..+.++|++...+. +.+    ++..+.++.+.+||.++...+..++.+.......+++|.|+++..|.+....+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~  265 (1140)
T PRK06814        186 LGWLASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATL  265 (1140)
T ss_pred             HHHHHHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHH
Confidence            344444556654322111 111    122345778889999888777777776777778889999999999998877777


Q ss_pred             HhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 018940          291 VPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG  331 (348)
Q Consensus       291 ~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~  331 (348)
                      +.....+++++|+++.+++ +|.+++  +.+..+.++..++.
T Consensus       266 ~~~~~~~g~~ig~~~~g~l~~~~~~~--~~~~~~~~~~~~~~  305 (1140)
T PRK06814        266 FLAVFSVGVAVGSFLASKLSEGRITL--LYVPIGALLMGLFG  305 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceee--eeehHHHHHHHHHH
Confidence            7677778889999989887 666655  44444444433333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.75  E-value=1.3e-15  Score=145.64  Aligned_cols=279  Identities=13%  Similarity=0.044  Sum_probs=160.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCC
Q 018940           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP  113 (348)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~  113 (348)
                      +.......+..+|++.|+++.|.|+.|+|.++++..+...+++|++|.++||.+++|..+....+..++.+.....    
T Consensus        12 f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~----   87 (400)
T PF03825_consen   12 FLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF----   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH----
Confidence            3344555677899999999999999999999999999999999999999999987666555444444444332221    


Q ss_pred             CcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 018940          114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK  193 (348)
Q Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~  193 (348)
                           ..+.+..+...    .++.+.+....+-..++..+..+  +++......|. .+++|-++++......+....  
T Consensus        88 -----~~~f~~~~~~~----~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRl-wGSiGf~~~~~~~~~~~~~~~--  153 (400)
T PF03825_consen   88 -----SSSFWWLFVIM----LLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRL-WGSIGFIVAALAFGGLLGGYL--  153 (400)
T ss_pred             -----hccHHHHHHHH----HHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchh-hhhHHHHHHHHHHHHHHHhhh--
Confidence                 12233222211    23344444333333344443332  22333333442 334555444322111111111  


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccc-c-cCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH
Q 018940          194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-L-RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQA  271 (348)
Q Consensus       194 ~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  271 (348)
                          ...+..+.+++.+....+..... +..|+.+.+++ + +.+++..+...+++|||++....+..++.+........
T Consensus       154 ----~~~~~~~~~~i~~~~~~ll~~~~-l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~  228 (400)
T PF03825_consen  154 ----GISGTSLIFYIAAILSLLLAGFA-LFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYT  228 (400)
T ss_pred             ----ccccccHHHHHHHHHHHHHHHHH-HhCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence                11122234444444444333333 23454332111 1 11122222334789999988877777777888888899


Q ss_pred             HHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          272 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       272 ~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      |.+.|++|..+.+.+..+....+..++=++.-...+++ +|+|.|  +.+.++++.+++=..+....
T Consensus       229 f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~--~ll~~a~~~~~vR~~l~a~~  293 (400)
T PF03825_consen  229 FFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK--WLLLLALVAYAVRWLLYAYF  293 (400)
T ss_pred             HHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHh
Confidence            99999998866665544433233333334445566776 999988  89999988888777666666

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.75  E-value=2.5e-15  Score=147.77  Aligned_cols=172  Identities=10%  Similarity=-0.065  Sum_probs=121.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcc-cCCchHHHHHHHHHHHHHHHHH
Q 018940           30 GSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSV  107 (348)
Q Consensus        30 ~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~i~~~~~~~~i~~~~l  107 (348)
                      .+..+.....++.+.++++.|+++. |.+..+.+++...+.....+..++.|+++|| +||||.++ .+.+..+++...+
T Consensus        20 ~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~-~g~~~~~~g~~~~   98 (489)
T PRK10207         20 FFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIV-LGAIVLAIGYFMT   98 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHH-HHHHHHHHHHHHH
Confidence            3455667777888889999999875 9999999999999999999999999999999 99999864 6777777776554


Q ss_pred             hcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcc-cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLSLYAIAFIV  186 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~R~~~~~~~~~~~~ig~~~~~~~~~~~  186 (348)
                      +.   +    . .......+.+    .+.++|.+...++..+++.|..++++ +|++..++.+.+.++|..+++.+++.+
T Consensus        99 ~~---~----~-~~~~ll~~~~----~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l  166 (489)
T PRK10207         99 GM---S----L-LKPDLIFIAL----GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI  166 (489)
T ss_pred             HH---h----c-cchhHHHHHH----HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            42   1    1 1111111111    24567777777777789999886544 446778888889999988877665444


Q ss_pred             HHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018940          187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE  225 (348)
Q Consensus       187 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~  225 (348)
                      .          +..|||+.|++.++ +++..++.+...+
T Consensus       167 ~----------~~~gw~~~F~i~~i-~~~~~~~~~~~~~  194 (489)
T PRK10207        167 A----------DKFGYSVTYNLCGA-GLIIALLVYFACR  194 (489)
T ss_pred             H----------HhhChHHHHHHHHH-HHHHHHHHHHHcc
Confidence            3          23589999987643 4444444444444

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.75  E-value=5.4e-20  Score=159.31  Aligned_cols=280  Identities=47%  Similarity=0.851  Sum_probs=200.6

Q ss_pred             CCCCCCCCchHhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhc---------c
Q 018940           15 DSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID---------R   85 (348)
Q Consensus        15 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~D---------r   85 (348)
                      |..+||++.+++++|+.|++.+++..+++.+|+..|++++|+++...+.++.++.+.+++..|+.|..+|         |
T Consensus         8 DPstkPigr~svf~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr   87 (412)
T KOG4830|consen    8 DPSTKPIGRTSVFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDR   87 (412)
T ss_pred             CCCCCcccceeeeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhh
Confidence            3468899999999999999999999999999999999999999999999999999999999999996665         8


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHH
Q 018940           86 FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLT  165 (348)
Q Consensus        86 ~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~  165 (348)
                      +|||+.|-..|.++..+++...|.+         ..             ++..+.+.               .       
T Consensus        88 ~G~~~~wh~~gt~lVslSf~~ifg~---------a~-------------iF~~~~~~---------------s-------  123 (412)
T KOG4830|consen   88 IGRRMSWHLIGTVLVSLSFPMIFGF---------AK-------------IFLCKSTT---------------S-------  123 (412)
T ss_pred             hcceeeeeecccEEEEEechhhcCc---------ee-------------EEeeccHH---------------H-------
Confidence            9999999887766655554333210         00             00000000               0       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCC-cccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHH
Q 018940          166 SCRNAFTMVANLSLYAIAFIVFSVSTAK-THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWA  244 (348)
Q Consensus       166 ~~~~~~~~ig~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~  244 (348)
                      -+.+    +|-..   +...+++ ++.. ...+.+..+||..+...++++..+.+...+++||+..-..++.+..+-+|.
T Consensus       124 ~van----lglya---ialvVFg-v~~A~~ke~tea~~R~~~~~~v~lG~~~~~vF~~~TrEP~~~~~~~~s~~~Rm~W~  195 (412)
T KOG4830|consen  124 EVAN----LGLYA---IALVVFG-VGWASVKESTEALIRLAGWLVVVLGITVAFVFYAFTREPTNSFSSDASELVRMHWT  195 (412)
T ss_pred             HHHH----hHHHH---HHhheee-eeeecccccHHHHHHHhhhheeeeceeEEEEEeecccCcccccCcchhhhhcccch
Confidence            0111    11110   0000111 0110 011234456777666656676666677777888764322233333445688


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 018940          245 YWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGG  324 (348)
Q Consensus       245 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~r~g~r~k~~~~~g~  324 (348)
                      ..|++-.++++.+.+++.....+..+.|+++|+.++++++.+..++++.+.+++++..+.+-..+..=|+|.|..+..|.
T Consensus       196 ~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~~eipwngkrlKayYsaGg  275 (412)
T KOG4830|consen  196 SWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVNSEIPWNGKRLKAYYSAGG  275 (412)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhcccCCcCcceeeeeeeccc
Confidence            88999999999999999999999999999999999999998888899999999999888766544333444347788999


Q ss_pred             HHHHHHHHhHhhccCCceeeee
Q 018940          325 VLWVFCGAGILILPMNMSAFML  346 (348)
Q Consensus       325 ~l~~v~~~~~~~~~~~~~~~~~  346 (348)
                      +.++.+++.+...|++-...||
T Consensus       276 iiwifcga~ilLlpr~i~symy  297 (412)
T KOG4830|consen  276 IIWIFCGAVILLLPRGIKSYMY  297 (412)
T ss_pred             HHHHHhhhheeecccchHHHHH
Confidence            9999999999999988665544

>TIGR00898 2A0119 cation transport protein

Probab=99.74  E-value=6.9e-16  Score=152.31  Aligned_cols=257  Identities=15%  Similarity=0.108  Sum_probs=161.3

Q ss_pred             HHHHhhCCC---hhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhH
Q 018940           49 LFLTDIGLS---PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE  125 (348)
Q Consensus        49 ~~~~~~g~s---~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~  125 (348)
                      ...+|.|++   +.+.|++.++..+..++++++.|+++||+||||.++ .+.+..+++......  .       .+....
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~-~~~~~~~i~~~~~~~--~-------~~~~~~  183 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLL-LSTLVTAVSGVLTAF--S-------PNYTVF  183 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHH-HHHHHHHHHHHHHHH--c-------ccHHHH
Confidence            333445888   899999999999999999999999999999998764 566665555543321  1       133322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHH
Q 018940          126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI  205 (348)
Q Consensus       126 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  205 (348)
                      .+.    ..+.|++.+.......+++.|..+ +++|++..+....+..+|.++++.     ++.+        ..+||+.
T Consensus       184 ~~~----r~l~G~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~-----~~~~--------~~~wr~~  245 (505)
T TIGR00898       184 LVF----RLLVGMGIGGIWVQAVVLNTEFLP-KKQRAIVGTLIQVFFSLGLVLLPL-----VAYF--------IPDWRWL  245 (505)
T ss_pred             HHH----HHHHHhhccchHHHHHHHhheecC-hhhhHHHHHHHHHHHHHHHHHHHH-----HHHH--------hhHHHHH
Confidence            222    236777777777778888999885 578998888877776666655433     3222        1249999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccc---ccc----------------------------cCC---chhHHHHHHHHHhHH
Q 018940          206 AYSSIFIGCCFVGIFLSRTEEPRLK---MGL----------------------------RGN---SHARISWAYWFKKIL  251 (348)
Q Consensus       206 ~~i~~~i~~~~~ll~~~~~~e~~~~---~~~----------------------------~~~---~~~~~~~~~~~~~~~  251 (348)
                      +++.+++.++..+.. +++||++..   +++                            +++   ++.+..+++++++|.
T Consensus       246 ~~~~~i~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  324 (505)
T TIGR00898       246 QLAVSLPTFLFFLLS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPN  324 (505)
T ss_pred             HHHHHHHHHHHHHHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChH
Confidence            988877776665554 567774320   000                            000   000124567888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHH
Q 018940          252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC  330 (348)
Q Consensus       252 ~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~  330 (348)
                      ++...+...+.+...... .|...+..+..+.+..   ....+..+..+++.++.+++ ||+|||  +.+..+.++.+++
T Consensus       325 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr--~~~~~~~~~~~~~  398 (505)
T TIGR00898       325 LRKTTLCLMMLWFTTAFS-YYGLVLDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRR--YTMAASLLLAGVA  398 (505)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHhccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHH
Confidence            776554443333332221 1222222333343322   22233445667788888887 999999  8888888888888


Q ss_pred             HHhHhhccCC
Q 018940          331 GAGILILPMN  340 (348)
Q Consensus       331 ~~~~~~~~~~  340 (348)
                      ++.+.+.+.+
T Consensus       399 ~l~~~~~~~~  408 (505)
T TIGR00898       399 LLLLLFVPVD  408 (505)
T ss_pred             HHHHHHcCCC
Confidence            8777776544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.73  E-value=1e-14  Score=143.08  Aligned_cols=165  Identities=12%  Similarity=-0.056  Sum_probs=119.4

Q ss_pred             hHHhhhhhHHHHHHHHHHHHHHHHHHh---hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcc-cCCchHHHHHHHHHHHH
Q 018940           27 LYYGSGHMLNDITAACWFTYLLLFLTD---IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAV  102 (348)
Q Consensus        27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~i~~~~~~~~i  102 (348)
                      .......+.....++.+.++++.|+++   .|+|+.++|.+.++..+...+++++.|+++|| +||||.+ ..+.+..++
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l-~~~~~~~~~   91 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM-VLGGIVLML   91 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH-HHHHHHHHH
Confidence            344456677778888888999999976   59999999999999999999999999999999 8999885 467777777


Q ss_pred             HHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcc--cchhHHHHHHHHHHHHHHHHH
Q 018940          103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST--SRVVLTSCRNAFTMVANLSLY  180 (348)
Q Consensus       103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~R~~~~~~~~~~~~ig~~~~~  180 (348)
                      +...+..   .      .+.....+.+    .+.+++.+...++..+++++..++++  +|++..++.+...++|..+++
T Consensus        92 g~~~~~~---~------~~~~~~~~~~----~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~  158 (475)
T TIGR00924        92 GHFMLAM---S------IYPDLIFYGL----GTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISP  158 (475)
T ss_pred             HHHHHHh---c------ccHhHHHHHH----HHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHH
Confidence            7654331   1      1222121211    24566666666777788888876432  477888898899999988876


Q ss_pred             HHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHH
Q 018940          181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC  215 (348)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  215 (348)
                      .+.+.+.          +..+|++.|.+.++..++
T Consensus       159 ~l~g~l~----------~~~g~~~~f~~~~~~~~~  183 (475)
T TIGR00924       159 LLAGVIA----------ENYGYHVGFNLAAVGMVI  183 (475)
T ss_pred             HHHHHHH----------HhcChHHHHHHHHHHHHH
Confidence            6654432          245799999887654443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.72  E-value=1.7e-15  Score=143.38  Aligned_cols=287  Identities=11%  Similarity=0.067  Sum_probs=151.4

Q ss_pred             HhhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHH-H
Q 018940           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA-V  102 (348)
Q Consensus        25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~-i  102 (348)
                      +...+++..+...+.++...+|.+.|+++. |+|++++|.+.++..+...+.||+.|.++||.|.||.++..-.+... .
T Consensus         8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~   87 (412)
T PF01306_consen    8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLF   87 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHH
Confidence            445556666777777888899999999985 99999999999999999999999999999999977775543222211 1


Q ss_pred             HHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccC-cccchhHHHHHHHHHHHHHHHHHH
Q 018940          103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYA  181 (348)
Q Consensus       103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~R~~~~~~~~~~~~ig~~~~~~  181 (348)
                      +-+..+. +.|..   ..+.. .  ..++....++..+........+++.+.++. .-|-|+   .| ..+++|.++++.
T Consensus        88 ~pff~~v-~~pll---~~n~~-l--g~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~---~R-~wGSig~ai~s~  156 (412)
T PF01306_consen   88 GPFFIYV-FGPLL---QSNFW-L--GAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGR---AR-MWGSIGFAIASL  156 (412)
T ss_dssp             HHHHHHT-HHHHH---HTT-H-H--HHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHH---HH-HHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHH---HHHHH-H--HHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcch---HH-HHhhHHHHHHHH
Confidence            1111211 01210   01111 1  111101112222333333333444333311 112223   23 233555555555


Q ss_pred             HHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccc--c-cCCch---hHHHHHHHHHhHHHHHH
Q 018940          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG--L-RGNSH---ARISWAYWFKKILYYQV  255 (348)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~--~-~~~~~---~~~~~~~~~~~~~~~~~  255 (348)
                      +++.++.. .      +    ...+++....+++..++.+..-||++++.+  + ++.++   ..+...+++|+|++|.+
T Consensus       157 ~~G~L~~i-~------p----~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~  225 (412)
T PF01306_consen  157 LAGILFNI-N------P----NIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFF  225 (412)
T ss_dssp             HHHHHHHH-H------H----HHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHH
T ss_pred             Hhheeeee-C------c----cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHH
Confidence            55665542 1      1    223333333344444444444433222111  1 11111   11234678999999987


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhccccc---chhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 018940          256 ALVYMLTRLVVNVSQAYLAFYVINDLRMG---QSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG  331 (348)
Q Consensus       256 ~l~~~~~~~~~~~~~~~~~~yl~~~~~~~---~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~  331 (348)
                      .+........+......++.|..+..+-.   .+..+....+..+.-++.-.++|++ +|+|.|  +.+.++...+++=.
T Consensus       226 ~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k--~~Lllag~i~~iRi  303 (412)
T PF01306_consen  226 VLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK--NLLLLAGVIMAIRI  303 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH--hHHHHHHHHHHHHH
Confidence            77666655667777777888887654432   2223333333333445556777887 999999  87777766665544


Q ss_pred             HhHh
Q 018940          332 AGIL  335 (348)
Q Consensus       332 ~~~~  335 (348)
                      ....
T Consensus       304 ~~~~  307 (412)
T PF01306_consen  304 IGSG  307 (412)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.70  E-value=6.1e-17  Score=151.79  Aligned_cols=271  Identities=11%  Similarity=0.035  Sum_probs=183.8

Q ss_pred             CCCchHhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHH
Q 018940           20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL   99 (348)
Q Consensus        20 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~   99 (348)
                      .-+.+.....-+.++++..--+.+-..+.--.+..|+++...|++..+..+..++.+|++|.++||+.|++.+ ..|..+
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~-~vG~~i  107 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI-AVGIFI  107 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE-eeHHHH
Confidence            3334455666666666665555554544333333499999999999999999999999999999999998875 567666


Q ss_pred             HHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHH
Q 018940          100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (348)
Q Consensus       100 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~  179 (348)
                      ..++.+..-          ..+   .+..+.+...+.|+|.+.+.+...++++|+++ +++|++..++.+....+|+.++
T Consensus       108 W~~Av~~~~----------fs~---~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~-~~~Rs~~~~ify~~ipvGsglG  173 (493)
T KOG1330|consen  108 WTLAVFASG----------FSN---HFWQVLLCRGFVGIGEASYSPIAPSLIADSFP-DDKRSRVLGIFYFAIPVGSGLG  173 (493)
T ss_pred             HHHHHHHHH----------HHH---HHHHHHHHHHHhccchhhhcccchhHhhhcCc-chhhhHHHHHhhhhccccccee
Confidence            666654221          111   12223334457899999988888999999995 5789999999999988887775


Q ss_pred             HHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--c-------CCchhHHHHHHHHHhH
Q 018940          180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--R-------GNSHARISWAYWFKKI  250 (348)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~--~-------~~~~~~~~~~~~~~~~  250 (348)
                      ...+ -.++.        ....|||.+.+.+++++++.++.+++++||+.++.+  +       +..+..+..|.+.|+|
T Consensus       174 ~vvg-s~va~--------~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~  244 (493)
T KOG1330|consen  174 YVVG-SVVAS--------LTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIK  244 (493)
T ss_pred             EEee-eeecc--------CccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccC
Confidence            4432 22211        123499999999999999999999999997643211  1       1122334456667777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhhc---ccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhh
Q 018940          251 LYYQVALVYMLTRLVVNVSQAYLAFYVIND---LRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQ  314 (348)
Q Consensus       251 ~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~---~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~  314 (348)
                      .+..-.+.+...++...++.-|.|.++...   .|.+.....++..+..+++.+|.++++.+ ||+.+
T Consensus       245 v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~  312 (493)
T KOG1330|consen  245 VFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSR  312 (493)
T ss_pred             ceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHH
Confidence            766666666666666666555666654433   33333344456666677888888888887 77544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.70  E-value=1.1e-13  Score=128.34  Aligned_cols=276  Identities=12%  Similarity=0.063  Sum_probs=183.3

Q ss_pred             HHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccch
Q 018940           45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (348)
Q Consensus        45 ~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~  123 (348)
                      -.+.+.+++. +++..+++++.......+.+.+.+.|++.+|+|+|+-. +.|..++++++.+.+    |..  ....+ 
T Consensus        33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi-~lgL~l~avg~~lF~----pAa--~~~~y-  104 (422)
T COG0738          33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGI-VLGLLLYAVGAALFW----PAA--SSKSY-  104 (422)
T ss_pred             hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHH-HHHHHHHHHHHHHHh----hhh--hhhhH-
Confidence            3344555565 99999999999999999999999999999999999985 578999999986544    311  11111 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCC-c-----
Q 018940          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV---STAK-T-----  194 (348)
Q Consensus       124 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~---~~~~-~-----  194 (348)
                         ..+....++.+.|.+..++..+.++..+-+ +++...-.+..+.+..+|+++++.++..++..   .... +     
T Consensus       105 ---~~FL~~lFila~Gi~~LetaaNp~v~~lg~-~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~  180 (422)
T COG0738         105 ---GFFLVALFILASGIGLLETAANPYVTLLGK-PESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAI  180 (422)
T ss_pred             ---HHHHHHHHHHHhhhHHHHhccchHHHHhCC-chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHH
Confidence               112222236777788889989999988875 33445555667788888888877766555431   0000 0     


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCC-chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHH
Q 018940          195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN-SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYL  273 (348)
Q Consensus       195 ~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  273 (348)
                      .+.....+++++...+.+.+++.+.. ...|-|+.++.++++ ++.+....+++|||+++.-.+..++.-..-.....|+
T Consensus       181 ~~~~~~~v~~pYl~~~~~lvll~v~~-~~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl  259 (422)
T COG0738         181 KGADASSVQFPYLILAGLLVLLAVLI-LLSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFL  259 (422)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHH-HhccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHH
Confidence            00012236777766555444443333 233322222221111 1111145789999999988888888877778889999


Q ss_pred             HHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHh
Q 018940          274 AFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGIL  335 (348)
Q Consensus       274 ~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~  335 (348)
                      +.|+.|..|.+..+.+.+.....++..+|-++.-++ +|+...  |.+....+..++-++...
T Consensus       260 ~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~--k~Laf~a~~~ill~~~~~  320 (422)
T COG0738         260 VSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE--KYLAFYALIAILLLLAVA  320 (422)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHH
Confidence            999999989888877777777777888888777776 999988  766666555444444433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.69  E-value=3.9e-15  Score=144.93  Aligned_cols=264  Identities=13%  Similarity=0.039  Sum_probs=188.3

Q ss_pred             hhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHH
Q 018940           53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVF  132 (348)
Q Consensus        53 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  132 (348)
                      |.++...+.|.+.+++.+.+++++++.|.+.||+.-.|-+...+ +...+..++-.      .   ..+...    +..+
T Consensus        75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~-~~w~~~~~~~~------~---~~s~~~----~ial  140 (495)
T KOG2533|consen   75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSG-ILWGLFGFLTA------A---VHSFPG----LIAL  140 (495)
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHH-HHHHHHHHHHH------H---HhhhHH----HHHH
Confidence            34667788999999999999999999999999998555433222 22211111111      0   112332    2333


Q ss_pred             HHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHH
Q 018940          133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFI  212 (348)
Q Consensus       133 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i  212 (348)
                      .++.|+..++..++..+.+..... ++||+...++.++..++|++.++.+...+...-+.    ....||||.|++-+++
T Consensus       141 r~llGl~es~~wP~~~~~lg~wy~-~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~----~~~~gW~~~FiI~G~i  215 (495)
T KOG2533|consen  141 RFLLGLFESGGWPGVVAILGNWYG-KSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS----GGLAGWRWLFIIEGVI  215 (495)
T ss_pred             HHHHHHHhcccchHHHHHHHhhcC-hhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC----CCcCCceeehhHHHHH
Confidence            346788888888888888888774 68999999999999999999888776554432111    1357999999999999


Q ss_pred             HHHHHHHHHhhcccccccc-----cc----------cC-----CchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHH
Q 018940          213 GCCFVGIFLSRTEEPRLKM-----GL----------RG-----NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY  272 (348)
Q Consensus       213 ~~~~~ll~~~~~~e~~~~~-----~~----------~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  272 (348)
                      .++..++.++++|+.+.+.     ++          ++     ++..+..+++.+++|..|...+++++.....++...|
T Consensus       216 ~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~  295 (495)
T KOG2533|consen  216 TLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYW  295 (495)
T ss_pred             HHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHH
Confidence            9999999999998754311     00          00     1123456788999999999999999999999999999


Q ss_pred             HHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHh----hhhhhHHHHHHH-HHHHHHHHhHhhc
Q 018940          273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWT----GQRLKAYYSAGG-VLWVFCGAGILIL  337 (348)
Q Consensus       273 ~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~----g~r~k~~~~~g~-~l~~v~~~~~~~~  337 (348)
                      +|.|+.+..|.+..+...+.....++++++.++++++ ||.    .+|  ..+...+ +...++++.+...
T Consensus       296 lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~--~~~~~~~~~~~~~g~~~l~~~  364 (495)
T KOG2533|consen  296 LPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARR--LLFIVFLCLYAIIGAISLLAA  364 (495)
T ss_pred             HHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence            9999999777887766667677788999999999998 994    344  4444443 3455554444443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.68  E-value=6.9e-14  Score=127.84  Aligned_cols=271  Identities=15%  Similarity=0.099  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc
Q 018940           41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (348)
Q Consensus        41 ~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~  120 (348)
                      ..+.+.++..-+|.|+|.+.+|.+.++..++..+.+|+..+++.|+|..|.+ ..+.+..+++..+ =    +     ..
T Consensus        29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l-~~~Llli~~G~~i-R----~-----~~   97 (395)
T COG2807          29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSL-FLALLLIAAGILI-R----S-----LG   97 (395)
T ss_pred             hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHH-HHHHHHHHHHHHH-H----h-----cc
Confidence            3445666666666799999999999999999999999999999999998875 4566666666532 1    1     01


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhh
Q 018940          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (348)
Q Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~  200 (348)
                      +....    .....+.+.+.+..++-..+++-+-.  ||+-+..++.+.....+|+.+++.+..|+...         ..
T Consensus        98 ~~~~L----~~gt~l~G~gIav~nVLLPslIK~~F--pk~~~~mtglYs~sl~~~aaLaa~lavpla~~---------~~  162 (395)
T COG2807          98 GLPLL----FLGTLLAGAGIAVINVLLPSLIKRDF--PKRVGLMTGLYSTSLGAGAALAAALAVPLAQH---------SG  162 (395)
T ss_pred             cHHHH----HHHHHHHHhhHHHHHHhhhHHHHhhc--ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHh---------hc
Confidence            11111    11123556666666655555665543  34557788899888889999988888787642         24


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q 018940          201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND  280 (348)
Q Consensus       201 g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~  280 (348)
                      +||......+.++++..++.+.-.  .|.+.+ +.+.+ ..+..+++|||.-|.+.+..-+.+..+|....|+|.++.|+
T Consensus       163 gW~~aL~~WAl~allAl~~WlPq~--~r~~~~-~~~~~-~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~  238 (395)
T COG2807         163 GWRGALGFWALLALLALLIWLPQA--LREQAA-SIATK-LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR  238 (395)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhc--cccccc-ccccc-cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence            799988877777776655443321  121111 11111 11224578999989998888888899999999999999986


Q ss_pred             ccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhccCCcee
Q 018940          281 LRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSA  343 (348)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~~~~~~~  343 (348)
                       |+++.+.+....+..+..+..+++.|++ +|..++ |.......+.+.+|.+.+.+.|.+.+.
T Consensus       239 -G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~-r~~~~~~~~~~l~G~~G~~~~P~~~~~  300 (395)
T COG2807         239 -GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ-RPLVVLALLLMLVGLVGLLLAPGQLPI  300 (395)
T ss_pred             -CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence             9999888877777888999999999997 765544 366777778888888888888776553

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.67  E-value=2.7e-14  Score=133.29  Aligned_cols=276  Identities=12%  Similarity=0.058  Sum_probs=188.5

Q ss_pred             HhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccC-----CchHHHHHHHHHHHHHHHHHhcCc--CCCcccC-cccch
Q 018940           52 TDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG-----HFKIWHGAGSVLVAVSFSSVFGGC--MPCRILS-TSTLK  123 (348)
Q Consensus        52 ~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~G-----rrr~~i~~~~~~~~i~~~~l~~~~--~~~~~~~-~~~~~  123 (348)
                      .|+++++...|.+.+...+..- ..|.+|+.||+.+     ||.||++.|....+.+....-...  +.....+ ..+.+
T Consensus         8 vEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~   86 (403)
T PF03209_consen    8 VELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW   86 (403)
T ss_pred             HHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence            3558999999988887777655 6999999999988     999999999888777653221000  1100000 01111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHH
Q 018940          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR  203 (348)
Q Consensus       124 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~  203 (348)
                      .....-.+...++|+|.+...+++.++..|.++ ||+|.++.++.+....+|.++++.+.+.++.-+       +...-.
T Consensus        87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~-e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~-------s~~rL~  158 (403)
T PF03209_consen   87 LGLALAALAFLLYGLGVHASGTSFLALLADLAP-EERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF-------SPERLI  158 (403)
T ss_pred             HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCC-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc-------CHHHHH
Confidence            111112222247888899999999999999984 789999999999998888888777766655322       122222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccccc----cccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 018940          204 WIAYSSIFIGCCFVGIFLSRTEEPRLKM----GLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIN  279 (348)
Q Consensus       204 ~~~~i~~~i~~~~~ll~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~  279 (348)
                      ..+...+++.++..++.... .|++.++    +++++.+.++.+++..++|+.++.....++...++..-...+=.|--+
T Consensus       159 ~v~~~~a~i~~~l~~ia~wg-~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~  237 (403)
T PF03209_consen  159 QVIQGVALIALLLNLIALWG-QEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGE  237 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhH
Confidence            23333444444444444433 4543322    223455677888888899998888777777778888888888889999


Q ss_pred             cccccchhhhHHhHHHHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHhHhhccC
Q 018940          280 DLRMGQSAKALVPAIIYICSFIVSILLQEM--AWTGQRLKAYYSAGGVLWVFCGAGILILPM  339 (348)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l--~r~g~r~k~~~~~g~~l~~v~~~~~~~~~~  339 (348)
                      ..|++..+..-+......+.++|-.+.+++  +|.+++  +.-.+|+.+.+++.....+..+
T Consensus       238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~--~~a~~G~~~~~~~f~lii~a~~  297 (403)
T PF03209_consen  238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK--RTAALGCLLGALAFALIILAGP  297 (403)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHh
Confidence            999998776656666677788888888875  567777  7888888888888877666533

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=8.6e-16  Score=141.40  Aligned_cols=250  Identities=11%  Similarity=-0.005  Sum_probs=179.6

Q ss_pred             CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHH
Q 018940           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (348)
Q Consensus        55 g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  134 (348)
                      +-+++++|++.+...+.+.+.+|++|.+.||.|+|-|+ +.|...+..+.++ |.  .      ..++...+..+    .
T Consensus       102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm-~~Gl~vmf~sTil-Fa--f------g~sy~~l~vAR----~  167 (464)
T KOG3764|consen  102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPM-VAGLFVMFLSTIL-FA--F------GNSYPMLFVAR----S  167 (464)
T ss_pred             cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHH-HHHHHHHHHHHHH-HH--H------cchhHHHHHHH----H
Confidence            66789999999999999999999999999999999986 4687777777754 32  1      13455454444    3


Q ss_pred             HHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHH
Q 018940          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC  214 (348)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~  214 (348)
                      +-++|.++..++..+++++..++++||+++.+..-.+..+|.++++.+++.+-.          -.|++.+|++++++.+
T Consensus       168 LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe----------~~Gk~aPFlVL~~v~L  237 (464)
T KOG3764|consen  168 LQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE----------FAGKSAPFLVLAIVLL  237 (464)
T ss_pred             HhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh----------hcCCcCcHHHHHHHHH
Confidence            677999999999999999999888899999999888888888887666554443          3467788999998888


Q ss_pred             HHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHH
Q 018940          215 CFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAI  294 (348)
Q Consensus       215 ~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~  294 (348)
                      +-..+.++.++.. +.+++++++  ..++++++++|+.+...+....++........-++.+..|+...+..+.++..+-
T Consensus       238 ld~~L~l~vi~p~-~~~~~~~~~--~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp  314 (464)
T KOG3764|consen  238 LDGALQLLVIEPT-EMDPDSTEQ--GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLP  314 (464)
T ss_pred             HHHHHHHheeCcc-ccCcccccc--CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecc
Confidence            8877776655432 222211111  2346789999997766665555667777888888999888888555455544333


Q ss_pred             HHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 018940          295 IYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG  331 (348)
Q Consensus       295 ~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~  331 (348)
                      ..+..+++..+.+.+ ||+++..-.....|++...+.+
T Consensus       315 ~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~  352 (464)
T KOG3764|consen  315 ASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSS  352 (464)
T ss_pred             cccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence            456778888888887 9999661123334444444433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.65  E-value=6.6e-14  Score=135.04  Aligned_cols=256  Identities=11%  Similarity=0.028  Sum_probs=169.1

Q ss_pred             CChhHH----HHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHH-hcCcCCCcccCcccchhHHHHHH
Q 018940           56 LSPRGA----AAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-FGGCMPCRILSTSTLKVETISYC  130 (348)
Q Consensus        56 ~s~~~~----g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l-~~~~~~~~~~~~~~~~~~~~~~~  130 (348)
                      +|..+.    +.+.++..+..++++.+.|.++||+|||..+.+ ..+...++..+. +.  ..     .......    +
T Consensus        53 ~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~-~~~l~~~~~~~~~~s--~~-----~~~~e~l----i  120 (485)
T KOG0569|consen   53 LSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLL-SNLLAVLAALLMGLS--KS-----APSFEML----I  120 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHH--HH-----hhhHHHH----H
Confidence            555443    557888899999999999999999999977654 444433333222 21  00     1122222    3


Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHH
Q 018940          131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSI  210 (348)
Q Consensus       131 l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~  210 (348)
                      +...+.|+..+.......-++.|.+| .+-||..+.....+..+|..++..++.|-+  +|      .+..|++.+....
T Consensus       121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP-~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i--lG------t~~~W~~l~~~~~  191 (485)
T KOG0569|consen  121 LGRLIVGLACGLSTGLVPMYLTEISP-KNLRGALGTLLQIGVVIGILLGQVLGLPSL--LG------TEDLWPYLLAFPL  191 (485)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhhcCh-hhhccHHHHHHHHHHHHHHHHHHHHccHHh--cC------CCcchHHHHHHHH
Confidence            23345666555555555567889986 578999999999998888888766654433  33      3567998887776


Q ss_pred             HHHHHHHHHHHhhccccccc----cc--cc--------------C---------------CchhHHHHHHHHHhHHHHHH
Q 018940          211 FIGCCFVGIFLSRTEEPRLK----MG--LR--------------G---------------NSHARISWAYWFKKILYYQV  255 (348)
Q Consensus       211 ~i~~~~~ll~~~~~~e~~~~----~~--~~--------------~---------------~~~~~~~~~~~~~~~~~~~~  255 (348)
                      +++++. ++...+.||+++.    +.  ++              +               +++.+.+++++++||.+++-
T Consensus       192 i~~~~~-l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~  270 (485)
T KOG0569|consen  192 IPALLQ-LALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRP  270 (485)
T ss_pred             HHHHHH-HHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHH
Confidence            655544 4455678886431    10  00              0               00012247789999877653


Q ss_pred             ----HHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHH
Q 018940          256 ----ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC  330 (348)
Q Consensus       256 ----~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~  330 (348)
                          ....+..++.......+|.+.+.++.|++..+........++.+++.+++++++ ||.|||  +.+..++.+..+.
T Consensus       271 ~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR--pLll~~~~~~~~~  348 (485)
T KOG0569|consen  271 LLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR--PLLLISLSLMAVA  348 (485)
T ss_pred             HHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHH
Confidence                223444445444556688888888889988777777777788889999999997 999999  8888888777776


Q ss_pred             HHhHh
Q 018940          331 GAGIL  335 (348)
Q Consensus       331 ~~~~~  335 (348)
                      .+.+.
T Consensus       349 ~~~~~  353 (485)
T KOG0569|consen  349 LLLMS  353 (485)
T ss_pred             HHHHH
Confidence            65554

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.63  E-value=9.3e-13  Score=130.03  Aligned_cols=159  Identities=11%  Similarity=-0.004  Sum_probs=107.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcc-cCCchHHHHHHHHHHHHHHHHHh
Q 018940           31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVF  108 (348)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~i~~~~~~~~i~~~~l~  108 (348)
                      +..+......+.+..+++.|+++. |+|..+.+.+.+..........++.|+++|| +||||.++ .+....+++...+.
T Consensus        28 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~-~g~~~~~ig~~l~~  106 (500)
T PRK09584         28 SIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM-LGAIVLAIGYALVA  106 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH-HHHHHHHHHHHHHH
Confidence            445566677777788999999775 9999999998888777777777899999999 59998754 56666666654332


Q ss_pred             cCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcc-cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~R~~~~~~~~~~~~ig~~~~~~~~~~~~  187 (348)
                      .  .+      .......+.    ..+.+++.+....+..+++++..++++ +|++..++.+.+.++|..+++.+.+.+.
T Consensus       107 ~--~~------~~~~~l~~~----~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~  174 (500)
T PRK09584        107 W--SG------HDAGIVYMG----MATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA  174 (500)
T ss_pred             H--hc------ccHHHHHHH----HHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            1  11      111111111    124556666666666778888875433 3445677777888888887766654443


Q ss_pred             HhccCCcccchhhHHHHHHHHHHHH
Q 018940          188 SVSTAKTHADLENQYRWIAYSSIFI  212 (348)
Q Consensus       188 ~~~~~~~~~~~~~g~~~~~~i~~~i  212 (348)
                                +..|||+.|.+.++.
T Consensus       175 ----------~~~g~~~~F~i~~i~  189 (500)
T PRK09584        175 ----------AKYGWSVAFALSVVG  189 (500)
T ss_pred             ----------HhhCHHHHHHHHHHH
Confidence                      245899999887643

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.63  E-value=1e-13  Score=136.12  Aligned_cols=279  Identities=15%  Similarity=0.068  Sum_probs=194.6

Q ss_pred             hHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHH
Q 018940           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (348)
Q Consensus        27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~  106 (348)
                      ++..+.++..+.....+..+...+.++++.+..+++++.++..-+..+..|+.+.++||+|.|+.. +.|.++.++++.+
T Consensus        49 ~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~-i~G~~v~~~g~~l  127 (509)
T KOG2504|consen   49 FASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVM-IAGGLVAALGLLL  127 (509)
T ss_pred             HhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHH-HHHHHHHHHHHHH
Confidence            344444444444444444445555555699999999999999999999999999999999998774 5788888888764


Q ss_pred             HhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (348)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~  186 (348)
                      ..+         ..+.+..++.+.   ++.|+|.+....|...++....  +++|+.+.++...+..+|..+.+    ++
T Consensus       128 ssF---------~~~i~~l~lt~g---vi~G~G~~~~~~paiviv~~YF--~kkR~lA~Gia~~GsG~G~~~~~----~l  189 (509)
T KOG2504|consen  128 SSF---------ATSLWQLYLTFG---VIGGLGLGLIYLPAVVILGTYF--EKKRALATGIAVSGTGVGTVVFP----PL  189 (509)
T ss_pred             HHH---------HhhHHHHHHHHH---HHhhccchhhhcchhhhhhhHh--HHHHHHHHhhhhccCCcceeeHH----HH
Confidence            432         124444555554   3788889988888888887665  56899999998888888877644    33


Q ss_pred             HHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcc--------------------cc-------cc-cc--ccc--
Q 018940          187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE--------------------EP-------RL-KM--GLR--  234 (348)
Q Consensus       187 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~--------------------e~-------~~-~~--~~~--  234 (348)
                      ...+.      +..|||+..++.+.+.+-..+......|                    |.       +. .+  +..  
T Consensus       190 ~~~l~------~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (509)
T KOG2504|consen  190 LKYLL------SKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKL  263 (509)
T ss_pred             HHHHH------HHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcc
Confidence            33332      3679999998887777665555555444                    00       00 00  000  


Q ss_pred             -------------CCc--hhHHHH----HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHH
Q 018940          235 -------------GNS--HARISW----AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAII  295 (348)
Q Consensus       235 -------------~~~--~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~  295 (348)
                                   +..  ..+...    .+++|||.++.+.+...+...++.....++|.|.. ..+.+..+.+....+.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Sii  342 (509)
T KOG2504|consen  264 SLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSII  342 (509)
T ss_pred             cccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHH
Confidence                         000  111112    47889999888888888888899999999999998 6688887777777888


Q ss_pred             HHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 018940          296 YICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG  331 (348)
Q Consensus       296 ~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~  331 (348)
                      .+..+++-++.|++ ||...+.+..+.++++..+++.
T Consensus       343 gi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~  379 (509)
T KOG2504|consen  343 GVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR  379 (509)
T ss_pred             HHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence            88999999999998 8888552345666666555555

>TIGR00788 fbt folate/biopterin transporter

Probab=99.60  E-value=2.9e-13  Score=132.52  Aligned_cols=272  Identities=12%  Similarity=0.020  Sum_probs=168.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHh-hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccC----CchHHHHHHHHHHH-HHHHHH
Q 018940           34 MLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG----HFKIWHGAGSVLVA-VSFSSV  107 (348)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~G----rrr~~i~~~~~~~~-i~~~~l  107 (348)
                      +...+. .+....+++++++ .|+|+++++...+...+...+ .|++|.++||++    |||++++.+.++.. +... .
T Consensus        36 ~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~-~  112 (468)
T TIGR00788        36 FVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYG-L  112 (468)
T ss_pred             HHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHH-h
Confidence            344444 4555666777776 499999999999999999887 788999999974    46777777765552 2221 1


Q ss_pred             hcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchh---HHHHHHHHHHHHHHHHHHHHH
Q 018940          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVV---LTSCRNAFTMVANLSLYAIAF  184 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~---~~~~~~~~~~ig~~~~~~~~~  184 (348)
                      .    +.    ..+....   ..+...+.+++.+..+++..++..|..+  |++..   ..++.+....+|..+++.+++
T Consensus       113 l----~~----~~~~~~~---~~~~~~l~~~~~a~~dv~~da~~~e~~~--~~~~~~~~~~s~~~~~~~~G~~vg~~l~G  179 (468)
T TIGR00788       113 L----PG----KVSSAKV---AAAFIFLAALAKALYDVLVDSLYSERIR--ESPSAGPSLVSWMWGASATGGLISSLLGG  179 (468)
T ss_pred             c----cc----ccchHHH---HHHHHHHHHHHHHHHHHhHHHHHhhhhh--cCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence            1    10    1111111   1112235677788888899999999886  23322   333444444567777666665


Q ss_pred             HHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccc-cCC---------c----hhHH---HHHHH
Q 018940          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL-KMGL-RGN---------S----HARI---SWAYW  246 (348)
Q Consensus       185 ~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~-~~~~-~~~---------~----~~~~---~~~~~  246 (348)
                      ++..          ..+|+..+++.+++.++. .+...+.+|++. ..++ +++         .    ..++   ..++.
T Consensus       180 ~l~~----------~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  248 (468)
T TIGR00788       180 PLLD----------KTLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGA  248 (468)
T ss_pred             HHHH----------hcCcchHHHHHHHHHHHH-HHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            5542          347888888887777666 444567788541 1111 010         0    1111   23455


Q ss_pred             HHhHHHHHHHHHHHH-HHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHH
Q 018940          247 FKKILYYQVALVYML-TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGG  324 (348)
Q Consensus       247 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~  324 (348)
                      +++|..+...+..++ .......... ...+.++..|.++.+.++......++.+++..+.++. +|++.|  +++.++.
T Consensus       249 l~~~~i~~~l~fifl~~~~~~~~~~~-~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r--~~l~~~~  325 (468)
T TIGR00788       249 IQLLEIAKPLIFIFLSYANLPGASGS-VFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR--LLFGVTT  325 (468)
T ss_pred             HhcHHHHHHHHHHHHHHhhcCCCCce-eEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH--HHHHHHH
Confidence            777877665444444 2222222111 1113445688888888777666778888888888876 888888  9999999


Q ss_pred             HHHHHHHHhHh
Q 018940          325 VLWVFCGAGIL  335 (348)
Q Consensus       325 ~l~~v~~~~~~  335 (348)
                      ++.+++.+...
T Consensus       326 ~l~~~~~~~~~  336 (468)
T TIGR00788       326 LLYTLSSLFDL  336 (468)
T ss_pred             HHHHHHHhCce
Confidence            98888775543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.60  E-value=3.1e-12  Score=124.97  Aligned_cols=165  Identities=13%  Similarity=0.007  Sum_probs=112.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhccc-CCchHHHHHHHHHHHHHHHHHhcC
Q 018940           33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAGSVLVAVSFSSVFGG  110 (348)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~-Grrr~~i~~~~~~~~i~~~~l~~~  110 (348)
                      .+......+.+..+++.|+++. |+|+.+.+.+...+.....+..++.|+++||+ ||||.+ ..+.+..+++...+.. 
T Consensus        18 ~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i-liG~il~~lg~lll~~-   95 (493)
T PRK15462         18 QIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV-MLGALLMAIGHVVLGA-   95 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH-HHHHHHHHHHHHHHHH-
Confidence            4445666667778999999875 99999999999999999999999999999999 999885 4677777766543321 


Q ss_pred             cCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018940          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS-TSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~  189 (348)
                        +     ..+......  .+  .+..++.+....+..++++|..+++ ++|.+..++.+.+.++|+.+++.+.+.+.  
T Consensus        96 --~-----~~~~~~~~l--~l--~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~--  162 (493)
T PRK15462         96 --S-----EIHPSFLYL--SL--AIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ--  162 (493)
T ss_pred             --h-----hcchhHHHH--HH--HHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH--
Confidence              1     011111111  11  1233445555555667888988643 35788888888888888887766654443  


Q ss_pred             ccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 018940          190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFL  221 (348)
Q Consensus       190 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~  221 (348)
                              +..||++.|.+.++ +.+..++.+
T Consensus       163 --------~~~Gw~~~F~iaai-gm~l~li~~  185 (493)
T PRK15462        163 --------EEYSWAMGFGLAAV-GMIAGLVIF  185 (493)
T ss_pred             --------hhhChHHHHHHHHH-HHHHHHHHH
Confidence                    24589999887655 334344333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.60  E-value=2e-12  Score=127.90  Aligned_cols=268  Identities=15%  Similarity=0.113  Sum_probs=155.8

Q ss_pred             HHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchh
Q 018940           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (348)
Q Consensus        45 ~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~  124 (348)
                      .-++...+|+|-+ ....|+.....+..++..|+.|+++|.||||..+ +.+.++..++.+...+         ..+.. 
T Consensus        65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~-i~g~~l~vvG~Iv~at---------A~~~~-  132 (599)
T PF06609_consen   65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFF-IIGSLLGVVGSIVCAT---------AQNMN-  132 (599)
T ss_pred             HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHH-HHHHHHHHhHHHHhhc---------CCcHH-
Confidence            3345555667554 3566778888899999999999999999998765 5688888888765432         11222 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCcccchhhHHH
Q 018940          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-VSTAKTHADLENQYR  203 (348)
Q Consensus       125 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~~~~g~~  203 (348)
                      .   ++....+.|+|.+..... ...++|+.++ |.|.....+..    ...+..... ++.++ .+.      ...+||
T Consensus       133 ~---~iag~~l~GvgaG~~~~~-~~~isEl~p~-k~R~~~~~~~~----~~~i~~~~~-~~~ia~~~~------~~~~WR  196 (599)
T PF06609_consen  133 T---FIAGMVLYGVGAGVQELA-ALAISELVPN-KWRGLGLAIAS----IPFIITTWI-SPLIAQLFA------AHSGWR  196 (599)
T ss_pred             H---HHHHHHHHHHhhHHHHHH-HHHHHHhccc-chhhhHhHHHH----HHHHhhhcc-cHHHHHHhc------cCCCcc
Confidence            1   222223566776655443 4457888854 56654333222    222222222 23332 222      245899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccc-cc-ccc-----c--------------------------------CCc-------
Q 018940          204 WIAYSSIFIGCCFVGIFLSRTEEPR-LK-MGL-----R--------------------------------GNS-------  237 (348)
Q Consensus       204 ~~~~i~~~i~~~~~ll~~~~~~e~~-~~-~~~-----~--------------------------------~~~-------  237 (348)
                      |.+++++++..+..++.+++.+.++ .+ .++     +                                +.+       
T Consensus       197 w~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~  276 (599)
T PF06609_consen  197 WIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAP  276 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhh
Confidence            9999988876666655544443221 11 000     0                                000       


Q ss_pred             ------------------hhHHHH--HHHHHhH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccch---hhhHHhH
Q 018940          238 ------------------HARISW--AYWFKKI-LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS---AKALVPA  293 (348)
Q Consensus       238 ------------------~~~~~~--~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~---~~~~~~~  293 (348)
                                        ..|+++  .++|||+ .+....+..++....++....++|+......+-+..   ..+....
T Consensus       277 lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~  356 (599)
T PF06609_consen  277 LVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISS  356 (599)
T ss_pred             HHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhh
Confidence                              001111  3577774 444444555555566677778899887766555432   2334444


Q ss_pred             HHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhccCCc
Q 018940          294 IIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNM  341 (348)
Q Consensus       294 ~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~~~~~  341 (348)
                      ....+..+|+++.+.+ +|+++- |..+.++.+++++++-++....++.
T Consensus       357 ~~~fg~~~g~~i~g~l~~~ir~~-Kw~li~~~~~~ta~~Gama~~~~~n  404 (599)
T PF06609_consen  357 PVGFGSCAGAVILGLLFSKIRHI-KWQLIFGSVLMTAFCGAMAAVRPDN  404 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHccch-hHHHHHHHHHHHHHHHHHHHccCCC
Confidence            4556677788778876 777644 6677788888887776666664444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.57  E-value=4.9e-12  Score=121.08  Aligned_cols=148  Identities=8%  Similarity=-0.007  Sum_probs=106.3

Q ss_pred             CchHhhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhH-HHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHH
Q 018940           22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRG-AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL   99 (348)
Q Consensus        22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~-~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~   99 (348)
                      +.|.+...-+..++...-.=.-.++..+++.+. |+++.+ .|.+.++....+++.+.+.|+++||+|.||.+ ..+.+.
T Consensus        23 ~~W~~~~~~lC~fGF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL-~l~~l~  101 (511)
T TIGR00806        23 KSWRVLVLYLCFYGFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVL-VLQALS  101 (511)
T ss_pred             cchhHHHHHHHHHHHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHH-HHHHHH
Confidence            556666554444433222222247777777765 999999 99999999999999999999999999998775 455555


Q ss_pred             HHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHH
Q 018940          100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (348)
Q Consensus       100 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~  179 (348)
                      ..+...++.+         ..+....    .+..+++|++.+... ++..++....| ++||+++.++.+.+..+|.+++
T Consensus       102 Wsl~t~L~~f---------a~Sl~~L----~i~R~llGvaEA~~~-A~~syI~~WfP-~kER~ratsi~~sg~~vG~~Ia  166 (511)
T TIGR00806       102 FVCVWLLLLL---------GTSVWHM----QLMEVFYSVTMAARI-AYSSYIFSLVP-PSRYQRAAAYSRAAVLLGVFLS  166 (511)
T ss_pred             HHHHHHHHHH---------HHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555443221         1122222    333347888888777 88888888885 7899999999999999999988


Q ss_pred             HHHHHH
Q 018940          180 YAIAFI  185 (348)
Q Consensus       180 ~~~~~~  185 (348)
                      +.+++.
T Consensus       167 ~~L~ql  172 (511)
T TIGR00806       167 SVLGQL  172 (511)
T ss_pred             HHHHHH
Confidence            777655

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.51  E-value=6.4e-12  Score=124.54  Aligned_cols=250  Identities=14%  Similarity=0.107  Sum_probs=155.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHH
Q 018940           59 RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNV  138 (348)
Q Consensus        59 ~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  138 (348)
                      .+.+++.+...+..++++++.|+++|++|||+.++ .+.++..++..+...  .       .+.......+    .+.|+
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~-~~~~~~~iG~ii~~~--a-------~~~~~l~~GR----~l~G~  154 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL-LAVVLFLIGAIIIAL--A-------PSWYQLIVGR----ILTGL  154 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHH--h-------hhHHHHHHHH----HHhcc
Confidence            45699999999999999999999999999998864 577777777654432  1       1334343333    46778


Q ss_pred             HHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHH
Q 018940          139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVG  218 (348)
Q Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~l  218 (348)
                      |.+........+++|+++ ++.|+...+..+....+|..++..+     +....    +...+||..+.+..+.+++..+
T Consensus       155 g~G~~~~~~piy~sEiap-~~~RG~l~~~~~l~~~~Gi~~~~~~-----~~~~~----~~~~~Wr~~~~~~~i~~~~~~~  224 (513)
T KOG0254|consen  155 GVGGASVLAPVYISEIAP-AHIRGTLVSLYQLFITIGILLGYCI-----NYGTS----KVYAGWRIPLGLALIPAVILAL  224 (513)
T ss_pred             chhhhhhcchhhHhhcCC-hhhhHHHHHHHHHHHHHHHHHHHHH-----hhhhc----cCCccHHHHHHHHHHHHHHHHH
Confidence            888777777788999885 5789999998888877776665322     22211    0114899888888777777666


Q ss_pred             HHHhhccccccc---ccc------------c--CCch--hHH-----------------HHHHHHH--hHH-HHHHHHHH
Q 018940          219 IFLSRTEEPRLK---MGL------------R--GNSH--ARI-----------------SWAYWFK--KIL-YYQVALVY  259 (348)
Q Consensus       219 l~~~~~~e~~~~---~~~------------~--~~~~--~~~-----------------~~~~~~~--~~~-~~~~~l~~  259 (348)
                      . .++.||++..   +.+            .  +++.  +.+                 .++++++  +++ ........
T Consensus       225 ~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~  303 (513)
T KOG0254|consen  225 G-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQ  303 (513)
T ss_pred             H-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHH
Confidence            6 7788885421   100            0  0000  000                 0122222  111 11122334


Q ss_pred             HHHHH-HHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          260 MLTRL-VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       260 ~~~~~-~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      .+.+. +.+....|.+.. .+..|.+... .....+..+..+++.+++..+ ||+|||  +.+..|...++++..++...
T Consensus       304 ~fqq~tG~~~~~~Y~~~i-f~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr--~lll~s~~~m~~~~~~~~~~  379 (513)
T KOG0254|consen  304 LFQQLTGINYVFYYSTTI-FKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRR--KLLLFGAAGMSICLVILAVV  379 (513)
T ss_pred             HHHHHhCCceEEeehHHH-HHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHhHHHHHHHHHHHHHH
Confidence            44444 334444455544 4444555321 223334455667777777666 999999  99999999888888766644

>TIGR01272 gluP glucose/galactose transporter

Probab=99.43  E-value=5.2e-11  Score=110.45  Aligned_cols=202  Identities=12%  Similarity=0.005  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc----cc--chhhHHHHHH
Q 018940          133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT----HA--DLENQYRWIA  206 (348)
Q Consensus       133 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~----~~--~~~~g~~~~~  206 (348)
                      .++.+.|.+..++..+++++++.+ +|++++..++.+....+|..+++.+...++..-....    .+  .....|++++
T Consensus        17 ~f~~g~G~~~lq~~~n~~v~~~~~-~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y   95 (310)
T TIGR01272        17 LFVLASGLTILQVAANPYVSILGP-IETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPY   95 (310)
T ss_pred             HHHHHhhHHHHHhhHHHHHHHHCC-cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHH
Confidence            347888999999999999999874 5678888899999999999988777665553211000    00  0124688888


Q ss_pred             HHHHHHHHHHHHHH-HhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc--ccc
Q 018940          207 YSSIFIGCCFVGIF-LSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND--LRM  283 (348)
Q Consensus       207 ~i~~~i~~~~~ll~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~--~~~  283 (348)
                      ++.+.+..+..++. +...||.+.+++++..++.....+..+|+|+++...+..++....-.+...|.+.|+.|.  .|+
T Consensus        96 l~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~  175 (310)
T TIGR01272        96 LLLAGALAVLAIIFAFLPLPELQEADVARVSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGL  175 (310)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCcccccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence            86655544444332 222344222111111001111123567888877766667776667778899999999864  588


Q ss_pred             cchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          284 GQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      +.++.+........+..+|.++.+++ ||+|+|  |.+.++..+.+++.++....
T Consensus       176 s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~--~~l~~~~~l~~~~~~l~~~~  228 (310)
T TIGR01272       176 PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG--RYLAFNAFLAVLLSIGAALT  228 (310)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHc
Confidence            87777776666777888999999997 999988  77888877777766544443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.43  E-value=2.4e-11  Score=117.69  Aligned_cols=267  Identities=18%  Similarity=0.126  Sum_probs=158.2

Q ss_pred             HHHHHHHHh-hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcc---cC-CchHHHHHHHHHHHHHHHHHhcCcCCCcccCc
Q 018940           45 TYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDR---FG-HFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (348)
Q Consensus        45 ~~l~~~~~~-~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr---~G-rrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~  119 (348)
                      .-..+|++| +|+++++......+..+...+ .|+.|.++|-   +| |||++++.+.++.+++...+..  .|..   .
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~--~~~~---~   83 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL--LPAS---E   83 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh--cccc---c
Confidence            334456666 499999999998888887775 9999999995   46 8899999888877665543332  3411   1


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccch
Q 018940          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (348)
Q Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~  198 (348)
                      .+....    .+...+..+|+...++...++..|..+. +++|+...++.+....+|++++..+.+++...         
T Consensus        84 ~s~~~~----~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~---------  150 (433)
T PF03092_consen   84 SSAAIA----VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS---------  150 (433)
T ss_pred             chhhhH----HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc---------
Confidence            122211    1122356788889999999999998853 34477888888888888888888777776542         


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc------cC-Cc----hhHH---HHHHHHHhHHHHHHHH-HHHHHH
Q 018940          199 ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL------RG-NS----HARI---SWAYWFKKILYYQVAL-VYMLTR  263 (348)
Q Consensus       199 ~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~------~~-~~----~~~~---~~~~~~~~~~~~~~~l-~~~~~~  263 (348)
                       .+.++.+.+.+++..+..+...+..+|+++.++.      ++ .+    ..++   .+++.++.|..+...+ ..++.+
T Consensus       151 -~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~  229 (433)
T PF03092_consen  151 -FGPQGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFN  229 (433)
T ss_pred             -CCCeEEehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence             2344555566666666655666666662221110      01 00    0122   2345666666665444 333332


Q ss_pred             HHHHhh---hHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHh
Q 018940          264 LVVNVS---QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAG  333 (348)
Q Consensus       264 ~~~~~~---~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~  333 (348)
                      ......   ..|+.++..+-.|++....+....+..+++++|..+.... .+...|  +++.+..++.++..+.
T Consensus       230 ~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R--~~~~~t~~~~~~~~l~  301 (433)
T PF03092_consen  230 LPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWR--RIFVVTTLVSVLASLF  301 (433)
T ss_pred             hccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHhcc
Confidence            222211   1122222121223666655555555556666666655543 555555  7777777766665543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.40  E-value=4.1e-10  Score=103.87  Aligned_cols=251  Identities=14%  Similarity=0.043  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcc
Q 018940           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (348)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~  116 (348)
                      ..++-+..+|+=..|++.|.++.|++.+...+....++..++.|.++||+||||. .+.-+++..+++..--        
T Consensus        47 ~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~-cl~~cily~~scl~k~--------  117 (354)
T PF05631_consen   47 MAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKA-CLLFCILYSLSCLTKH--------  117 (354)
T ss_pred             HHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH-HHHHHHHHHHHHHHHh--------
Confidence            3344466677655555669999999999999999999999999999999999987 4556777777764321        


Q ss_pred             cCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhh-hcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 018940          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVN-CITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (348)
Q Consensus       117 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  195 (348)
                        ..+...+.+.++    +.|++.+....++-++.. |..+..-++..+..........++.+..+..+.+.+.+..   
T Consensus       118 --~~~~~~L~~GRv----lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~---  188 (354)
T PF05631_consen  118 --SSNYPVLLLGRV----LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLAD---  188 (354)
T ss_pred             --ccccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH---
Confidence              123333434443    566776766666666653 2211100112222221111112222222222232222110   


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--cCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHH-hhhHH
Q 018940          196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNSHARISWAYWFKKILYYQVALVYMLTRLVVN-VSQAY  272 (348)
Q Consensus       196 ~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~  272 (348)
                       ....|-..+|....++..+..++....=+|...+..+  +..++.++.++.+.+||+.+.+.+...+.....+ ....|
T Consensus       189 -~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflW  267 (354)
T PF05631_consen  189 -WFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLW  267 (354)
T ss_pred             -HhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeee
Confidence             0011224455544444444443333333443221111  1123445567778888998888777776655444 45556


Q ss_pred             HHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH
Q 018940          273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM  309 (348)
Q Consensus       273 ~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l  309 (348)
                      -|..-.++.+.+   .+++....+++..+|+.+.+++
T Consensus       268 tPaL~~~~~~~P---~GlIFssFM~a~MlGS~lf~~l  301 (354)
T PF05631_consen  268 TPALDPDDEELP---LGLIFSSFMVAMMLGSSLFSRL  301 (354)
T ss_pred             eceecCCCCCCC---chHHHHHHHHHHHHHHHHHHHH
Confidence            776443222332   3455566678889999888764

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.39  E-value=7.3e-12  Score=117.65  Aligned_cols=157  Identities=17%  Similarity=0.177  Sum_probs=118.8

Q ss_pred             hHhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhc----ccCCchHHHHHHHHH
Q 018940           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGSVL   99 (348)
Q Consensus        24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~D----r~Grrr~~i~~~~~~   99 (348)
                      +..+.-+...++..+.+.+...|+++|++.+|++....+.+...+++...+.||+.|..+|    |||||||++..+.+.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~  111 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL  111 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence            5567777888889999999999999999999999999999999999999999999999999    599999999998888


Q ss_pred             HHHHHHHHhcCcCCC---cccCccc---chhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHH
Q 018940          100 VAVSFSSVFGGCMPC---RILSTST---LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM  173 (348)
Q Consensus       100 ~~i~~~~l~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~  173 (348)
                      .+++.+++-.  .+.   .+.....   .......+++-.-+..+.....+.|.-++..|+..+++++.+++++...+..
T Consensus       112 i~~~l~Lig~--aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~a  189 (498)
T KOG0637|consen  112 IAVSLFLIGY--AADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMA  189 (498)
T ss_pred             HHHHHhhhhh--HhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHH
Confidence            8888764321  111   0001111   1123333333334677777788899999999998765444448888888888


Q ss_pred             HHHHHHHHH
Q 018940          174 VANLSLYAI  182 (348)
Q Consensus       174 ig~~~~~~~  182 (348)
                      +|+.++...
T Consensus       190 vGnvLGY~~  198 (498)
T KOG0637|consen  190 VGNVLGYAL  198 (498)
T ss_pred             hcceeeeec
Confidence            888776544

>PTZ00207 hypothetical protein; Provisional

Probab=99.34  E-value=1.8e-09  Score=107.50  Aligned_cols=166  Identities=10%  Similarity=0.061  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc
Q 018940           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~  121 (348)
                      .++.+.+...++.|+|..+++++.+++. ...+.+++.|+++||+|||+.+ ..+.+..+++...... +.....  ..+
T Consensus        45 ~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vl-lig~ll~~iG~ll~al-a~~~~i--~~s  119 (591)
T PTZ00207         45 AFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIF-VLSMTVFCLGTLLFAL-TFQEVI--EGS  119 (591)
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHH-Hhcccc--cCc
Confidence            3344455544456999999999988754 4456788899999999999875 4677777777654432 011000  012


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhH
Q 018940          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (348)
Q Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g  201 (348)
                      .+...+.+    .+.+.+.+....+....+.+..  |++|+++.++...+..+|+.+.+.+...+   +        ..+
T Consensus       120 ~~~l~l~r----~l~G~G~~~~~~~~~~~i~~~F--p~~RG~a~Gi~~~~~gLGsaI~~~l~~~l---~--------~~~  182 (591)
T PTZ00207        120 VVRLSVYN----GLMTLGCMLFDLGAVVTVLSVF--PSNRGAVVAIMKTFTGLGSAILGSIQLAF---F--------SDN  182 (591)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHH---H--------HHh
Confidence            33222222    3566666666666666667766  46899999999988888876543322111   1        235


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccc
Q 018940          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (348)
Q Consensus       202 ~~~~~~i~~~i~~~~~ll~~~~~~e~~~  229 (348)
                      |++.+++.++++++..++....+++++.
T Consensus       183 ~~~~fl~l~vl~~vv~ll~~~~vr~p~~  210 (591)
T PTZ00207        183 TSAYFFFLMSFALVVGILAIVFMRLPPF  210 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhheeCCcc
Confidence            7777888888888888888888877643

>TIGR00889 2A0110 nucleoside transporter

Probab=99.28  E-value=5e-10  Score=108.21  Aligned_cols=181  Identities=13%  Similarity=0.009  Sum_probs=121.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhCCC--------hhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHH
Q 018940           33 HMLNDITAACWFTYLLLFLTDIGLS--------PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (348)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~~~~g~s--------~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~  104 (348)
                      .+...........+++.|.++.|.+        ..+.|.+.++..+...++.++.|+++||+||||.+ ..+.+...+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l-~~~~~~~~v~~  295 (418)
T TIGR00889       217 SMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVM-LLSLVAWALRF  295 (418)
T ss_pred             HHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHH
Confidence            3333333334457778888776544        36779999999999999999999999999998875 45666655554


Q ss_pred             HHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHH-HHHHHHHHHHHHHH
Q 018940          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIA  183 (348)
Q Consensus       105 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~-~~~~ig~~~~~~~~  183 (348)
                      .....   .     ..+.. ......+...+.+++++........++.+..+ +++|++..++.+ ....+|..+++.+.
T Consensus       296 ~l~~~---~-----~~~~~-~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p-~~~~g~~~g~~~~~~~~lg~~iGp~l~  365 (418)
T TIGR00889       296 GFFAY---G-----DPEYF-GYALLFLSMIVYGCAFDFFNISGSVFVEKEVP-VHIRASAQGLFTLMCNGFGSLLGYILS  365 (418)
T ss_pred             HHHHH---c-----Ccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            32221   1     01111 01111112235666666666666677888774 678999999986 56678888888777


Q ss_pred             HHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018940          184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (348)
Q Consensus       184 ~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~  228 (348)
                      +.+.+..+.    +...||++.+.+.+++.++..++..++.||+.
T Consensus       366 G~l~~~~g~----~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       366 GVMVEKMFA----YGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHhcc----ccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            777654331    11147999988888888888888888888863

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.24  E-value=8.1e-09  Score=94.95  Aligned_cols=174  Identities=15%  Similarity=0.123  Sum_probs=108.0

Q ss_pred             hHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHH
Q 018940           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (348)
Q Consensus        27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~  105 (348)
                      ..++--....+.+.++....+.+-++.. |.+..|..++.........+++-.+|..+||+||||-+.+ ..+...+.-+
T Consensus        80 ~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~-T~l~t~v~~~  158 (528)
T KOG0253|consen   80 FFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNL-TFLVTGVFGV  158 (528)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhh-hHHHHHHHHH
Confidence            4445445566667766667777777777 9999999999999999999999999999999999998754 3322222222


Q ss_pred             HHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 018940          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (348)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~  185 (348)
                      +--+         +.+..++.+.+.    +.+.|.+. .+-..++-.|.-|. .+|...+-.. ....+|.+....+...
T Consensus       159 is~~---------spnf~~L~~f~~----l~~~g~gg-~pv~~~~yle~lp~-~~r~~~~V~~-~~waig~v~ea~law~  222 (528)
T KOG0253|consen  159 ISGA---------SPNFASLCVFRA----LWGFGVGG-LPVDSAIYLEFLPS-SHRWLLTVMS-FFWAIGQVFEALLAWG  222 (528)
T ss_pred             hhcC---------CCCeehhhHHHH----HHhccCCC-ccHhHHHHHHhccC-cCCCcchhHH-HHHHHHHHHHHHHHHH
Confidence            1110         123333433333    44444444 22233444555543 4676654444 6667777776655434


Q ss_pred             HHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018940          186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (348)
Q Consensus       186 ~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~  228 (348)
                      ++          ...||||......+ .+..+....++++|++
T Consensus       223 vm----------~~~gwr~~l~~~~~-pl~~~a~f~~w~~ESp  254 (528)
T KOG0253|consen  223 VM----------SNFGWRYLLFTSST-PLMFAARFLVWVYESP  254 (528)
T ss_pred             HH----------HhhhHHHHHHHHHh-HHHHHHHHHhhcccCc
Confidence            33          24588887766654 4444555667888853

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.21  E-value=2.8e-09  Score=102.09  Aligned_cols=169  Identities=12%  Similarity=0.061  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCc
Q 018940           36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (348)
Q Consensus        36 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~  115 (348)
                      ..........++|.|+++.|.|+.+.|.+.++..+...++.++.|+++||+|||+..+ .+....+++...+..  .|  
T Consensus       217 ~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~-~~~~l~~~~~~~~~~--~~--  291 (393)
T PRK09705        217 INGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLM-LALVLQLVGFCGFIW--LP--  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHH-HHHHHHHHHHHHHHH--cc--
Confidence            3344445568899999888999999999999999999999999999999999987754 455454454433221  12  


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 018940          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (348)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  195 (348)
                         . +....  . .   .+.+++.+.......+...+..+++++|++..++.+....+++.+++.+.+.+.+..+    
T Consensus       292 ---~-~~~~~--~-~---~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g----  357 (393)
T PRK09705        292 ---L-QLPVL--W-A---MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG----  357 (393)
T ss_pred             ---c-hHHHH--H-H---HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence               1 11111  1 1   1334444444444444555555455678899888888888887777766666654322    


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018940          196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (348)
Q Consensus       196 ~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~  228 (348)
                           .|...+++.++.+.+..++.....||++
T Consensus       358 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        358 -----NYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             -----CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence                 2555555555555555555566667754

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.21  E-value=1.2e-08  Score=101.24  Aligned_cols=253  Identities=14%  Similarity=0.041  Sum_probs=145.4

Q ss_pred             hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHH
Q 018940           54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA  133 (348)
Q Consensus        54 ~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  133 (348)
                      +..+.....+..+++.+..+++..++|.++||+|||+.++ .+....++.-.....  .       .+.. .   +.++.
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~-~~~~~~~i~~~~~a~--a-------~~~~-~---~~~~R  178 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLL-VSLLLFIIFGILTAF--A-------PNYW-M---FLIFR  178 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHH-HHHHHHHHHHHHHHH--h-------CcHH-H---HHHHH
Confidence            4788889999999999999999999999999999998865 555555544432211  1       2333 2   23333


Q ss_pred             HHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHH
Q 018940          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG  213 (348)
Q Consensus       134 ~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~  213 (348)
                      .+.|++.+........+..|+.. +++|+.+..+ ......++..+    ++..+.+        ..+|||.+++..++.
T Consensus       179 fl~G~~~~~~~~~~~~~~~E~~~-~~~R~~~~~~-~~~~~~~~~~~----~~~~a~~--------~~~Wr~~~~~~~~~~  244 (521)
T KOG0255|consen  179 FLSGFFGSGPLTVGFGLVAEIVS-PKQRGLALTL-GGFFFVGGLML----PAGAAYI--------TRDWRWLFWIISIPS  244 (521)
T ss_pred             HHHHhhccchhHHhHhhheeecC-cchhhHHHHH-HHHHHHHHHHH----HHHHHHH--------HhhHHHHHHHHHHHH
Confidence            46777777777777788899985 6899998887 44444444443    2333332        238999999887777


Q ss_pred             HHHHHHHHhhccccccc---cc---------cc------CCchhH--------------------HHHHHHHHhHHHHHH
Q 018940          214 CCFVGIFLSRTEEPRLK---MG---------LR------GNSHAR--------------------ISWAYWFKKILYYQV  255 (348)
Q Consensus       214 ~~~~ll~~~~~~e~~~~---~~---------~~------~~~~~~--------------------~~~~~~~~~~~~~~~  255 (348)
                      .+..++ +++.+|.+..   ++         ++      .+.+.+                    ..+..+++.|+++..
T Consensus       245 ~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~  323 (521)
T KOG0255|consen  245 GLFLLL-WFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYR  323 (521)
T ss_pred             HHHHHH-HHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHH
Confidence            766555 5556675321   00         00      000000                    112344444443332


Q ss_pred             HHHHHHHHHHHHhhhHHHHHH-HhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHh
Q 018940          256 ALVYMLTRLVVNVSQAYLAFY-VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAG  333 (348)
Q Consensus       256 ~l~~~~~~~~~~~~~~~~~~y-l~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~  333 (348)
                      .+...+.+  ......|+... ..+..|.+..   .........-..+....+.. +|.|||  .....+..+..+++++
T Consensus       324 ~~~~~~~~--~~~~~~y~gl~~~~~~lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~--~~~~~~~~~~~~~~~~  396 (521)
T KOG0255|consen  324 TLYLLFIW--FVFSLVYYGLSLNVSGLGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRR--PPLFLSLFLAGIGLLL  396 (521)
T ss_pred             HHHHHHHH--HHHhHHHHhhhhhhhhcCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHH
Confidence            22222222  11122233222 2222333221   11111112233344444554 999999  8889999999999988


Q ss_pred             HhhccCCce
Q 018940          334 ILILPMNMS  342 (348)
Q Consensus       334 ~~~~~~~~~  342 (348)
                      ..+.+.+..
T Consensus       397 ~~~~~~~~~  405 (521)
T KOG0255|consen  397 FGWLPDDLG  405 (521)
T ss_pred             HHHhhccch
Confidence            888865543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.19  E-value=1.5e-08  Score=95.51  Aligned_cols=288  Identities=10%  Similarity=0.031  Sum_probs=162.6

Q ss_pred             hhHHhhhhhHHHHHHHHHHHH--HHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHH
Q 018940           26 VLYYGSGHMLNDITAACWFTY--LLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV  102 (348)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~~~~--l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i  102 (348)
                      .+.+++-++.|..-|   ..|  +..|.++. | |...+-++..++.++......+.-|+.||+|=|... +.+..+.++
T Consensus        47 Ll~~slL~~SN~~qW---I~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~-llgt~ln~i  121 (480)
T KOG2563|consen   47 LLAFSLLNFSNGMQW---IQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTAL-LLGTVLNGI  121 (480)
T ss_pred             HHHHHHHHhcCcchh---eeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHH-HHHHHHHHH
Confidence            466666666655433   233  23344554 6 777778889999999999999999999999998775 568888888


Q ss_pred             HHHHHhcCcCCCcccCcccch-hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHH
Q 018940          103 SFSSVFGGCMPCRILSTSTLK-VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (348)
Q Consensus       103 ~~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~  181 (348)
                      +.++=.....|     ..+.. +-.+... .-.+.+..+..... ..+-+++..-+++||..+......++.+|..++..
T Consensus       122 Ga~Ir~iss~p-----~v~~~f~~~l~~~-Gq~iaa~Aq~Fim~-lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  122 GAWIRLISSLP-----FVPPLFRRPLTHT-GQSIAAAAQPFILG-LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHhhhccCc-----cccccchhhhhHH-hHHHHHHhhhHhhc-cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            87642210111     01111 1111110 00111122211111 11223333335789999998888888888888766


Q ss_pred             HHHHHHHhccCCcccchhhHHHH--HHHHHHHHHHHHHHHHHhhcccccccccc-----cCCchhHHHHHHHHHhHHHHH
Q 018940          182 IAFIVFSVSTAKTHADLENQYRW--IAYSSIFIGCCFVGIFLSRTEEPRLKMGL-----RGNSHARISWAYWFKKILYYQ  254 (348)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~g~~~--~~~i~~~i~~~~~ll~~~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  254 (348)
                      +.+.++.. .   ..++...|..  .++..++++.+...+..+.-+|+++.++.     ..+.+..++.++++||++|..
T Consensus       195 lppilV~~-~---~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~i  270 (480)
T KOG2563|consen  195 LPPILVPS-S---KDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFII  270 (480)
T ss_pred             ccceecCC-C---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHH
Confidence            54333321 1   0112344543  34444445444444444444453322221     112345667889999999988


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 018940          255 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG  331 (348)
Q Consensus       255 ~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~  331 (348)
                      +.+++.......+...+.+-.-+ ...|.+....+.......+++.+++++++.+ ||.++- |++..+......++.
T Consensus       271 l~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f-k~~~~v~~~~~~v~~  346 (480)
T KOG2563|consen  271 LAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKF-KLTTLVLYLFALVGT  346 (480)
T ss_pred             HHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHHH
Confidence            87777666555554443332111 1224443345566666778899999999987 998876 555555555555543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.17  E-value=1.5e-14  Score=140.72  Aligned_cols=254  Identities=16%  Similarity=0.133  Sum_probs=151.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHH
Q 018940           58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFN  137 (348)
Q Consensus        58 ~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  137 (348)
                      ..+.+++.+...+...++.++.|.++||+|||+.++ .+..+..++..+...  .|.    ..+.....+.+    .+.|
T Consensus        45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~-~~~~~~~i~~~~~~~--~~~----~~~~~~~~~~R----~~~G  113 (451)
T PF00083_consen   45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALI-ISALLMIIGSILIAF--APS----YNNFWMLLIGR----FLIG  113 (451)
T ss_pred             HHHHHHHHHHHHhhhccccccccccccccccccccc-ccccccccccccccc--ccc----ccccccccccc----cccc
Confidence            356789999999999999999999999999998865 466665565543221  110    01233232333    3677


Q ss_pred             HHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHH
Q 018940          138 VGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFV  217 (348)
Q Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  217 (348)
                      ++.+........++.|..+ ++.|++..++.+....+|..++..+.... ...      +...+||+.+.+.+++.++. 
T Consensus       114 ~~~g~~~~~~~~~~~E~~~-~~~R~~~~~~~~~~~~~G~~~~~~~~~~~-~~~------~~~~~Wr~~~~~~~~~~l~~-  184 (451)
T PF00083_consen  114 FGIGGAYVVSPIYISEIAP-PKHRGFLSSLFQLFWALGILLASLIGYIV-SYY------SDNWGWRILLIFGAIPSLLV-  184 (451)
T ss_pred             ccccccccccccccccccc-ccccccccccccccccccccccccccccc-ccc------cccccccccccccccccccc-
Confidence            7777777777788999885 67899998888888778777655443211 111      11357999887776666544 


Q ss_pred             HHHHhhccccccc-----c-cc------c---------C----Cchh------HHHHHHHHHhHHHH-H---HHHHHHHH
Q 018940          218 GIFLSRTEEPRLK-----M-GL------R---------G----NSHA------RISWAYWFKKILYY-Q---VALVYMLT  262 (348)
Q Consensus       218 ll~~~~~~e~~~~-----~-~~------~---------~----~~~~------~~~~~~~~~~~~~~-~---~~l~~~~~  262 (348)
                      ++...+.||++..     + ++      +         +    .++.      +..++++++++..+ .   ......+.
T Consensus       185 ~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~  264 (451)
T PF00083_consen  185 LLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQ  264 (451)
T ss_pred             cccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccc
Confidence            3344677885310     0 00      0         0    0000      01245566664421 1   12222223


Q ss_pred             HHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHh
Q 018940          263 RLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGIL  335 (348)
Q Consensus       263 ~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~  335 (348)
                      +........++..++.++.+.+...  ....+..+..+++.+++..+ ||+|||  +.+..+..+.+++++.+.
T Consensus       265 ~~~g~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~GRr--~~~i~~~~~~~~~~~~~~  334 (451)
T PF00083_consen  265 QFSGINFIFYYSPSIFENAGISNSF--LATLILGLVNFLGTLLAIFLIDRFGRR--KLLIIGLLLMAICSLILG  334 (451)
T ss_pred             ccccccccccccccccccccccccc--ccccccccccccccccccccccccccc--cccccccccccccccccc
Confidence            2333334445555666666666541  11122334455666666565 999999  888888888777776663

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.17  E-value=2.1e-09  Score=105.36  Aligned_cols=167  Identities=8%  Similarity=-0.033  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHH-HHhcCcCCCcccC
Q 018940           41 ACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS-SVFGGCMPCRILS  118 (348)
Q Consensus        41 ~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~-~l~~~~~~~~~~~  118 (348)
                      .....++|.|+++. |.|..+.+...+...+...++.++.|+++||+||||..+. ......+... ..+.   .     
T Consensus       275 ~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~-~~~~~~~~~~~~~~~---~-----  345 (467)
T PRK09556        275 IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVA-CIALALIIFTLGVYQ---H-----  345 (467)
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH-HHHHHHHHHHHHHHH---h-----
Confidence            34567889999886 9999999999999999999999999999999999887543 2222222221 1111   0     


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHH-HHHHHHHHHHHHHH-hccCCc-c
Q 018940          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLYAIAFIVFS-VSTAKT-H  195 (348)
Q Consensus       119 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~i-g~~~~~~~~~~~~~-~~~~~~-~  195 (348)
                      ..+.....+..    .+.+........+......|..| +++|+.+.++.+...++ |..+++.+.+.+.+ ...+.. .
T Consensus       346 ~~~~~~~~~~~----~~~G~~~~~~~~~~~~~~~~~~p-~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~  420 (467)
T PRK09556        346 ATSEYMYLASL----FALGFLVFGPQLLIGVAAVGFVP-KKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIF  420 (467)
T ss_pred             cCcHHHHHHHH----HHHHHHHhhHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccc
Confidence            11222121111    12332211111122345557764 67899999998877775 54665555445443 110000 0


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHH
Q 018940          196 ADLENQYRWIAYSSIFIGCCFVGIFL  221 (348)
Q Consensus       196 ~~~~~g~~~~~~i~~~i~~~~~ll~~  221 (348)
                      +....+|+..+.+.++..++..+...
T Consensus       421 ~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        421 GYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             cccccChHHHHHHHHHHHHHHHHHHH
Confidence            00135688888777555555544443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.17  E-value=7.4e-09  Score=102.12  Aligned_cols=171  Identities=15%  Similarity=0.085  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCc
Q 018940           37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (348)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~  115 (348)
                      ....+....++|.|+++. |.+..+.+.......+...++.++.|+++||+|||+.++ .+.+...+.....+. ...  
T Consensus       263 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~~-~~~--  338 (490)
T PRK10642        263 NVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVI-LGSVALFVLAIPAFI-LIN--  338 (490)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHH-HHh--
Confidence            344455668899999775 999888888888888889999999999999999998754 444332222211110 001  


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 018940          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (348)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  195 (348)
                         ..+........    .+.+++.+.......+..+++.| ++.|++..++.+....+++.+++.+.+.+...      
T Consensus       339 ---~~~~~~~~~~~----~~~g~~~~~~~g~~~~~~~~~~p-~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~------  404 (490)
T PRK10642        339 ---SNVIGLIFAGL----LMLAVILNCFTGVMASTLPAMFP-THIRYSALAAAFNISVLVAGLTPTLAAWLVES------  404 (490)
T ss_pred             ---CCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence               11222121111    13334444444445567777775 57899887764333344444444333333211      


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 018940          196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (348)
Q Consensus       196 ~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~  229 (348)
                         ..+|+..+....+.+++..+. .++.||++.
T Consensus       405 ---~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~  434 (490)
T PRK10642        405 ---TQNLMMPAYYLMVVAVIGLIT-GVTMKETAN  434 (490)
T ss_pred             ---hCCchHHHHHHHHHHHHHHHH-HHHhccccC
Confidence               123555554444444444333 345688543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.16  E-value=1e-09  Score=103.10  Aligned_cols=155  Identities=17%  Similarity=0.090  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccC
Q 018940           39 TAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (348)
Q Consensus        39 ~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~  118 (348)
                      .......+.++|.++.|.++.+.+.+.++..+...++.++.|+++||+|||+.+. .+....+++...+..  .+     
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~~--~~-----  291 (377)
T TIGR00890       220 SGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMS-IVFGISAVGMAAMLF--IP-----  291 (377)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHHHHH--cc-----
Confidence            3334445666776677999999999999999999999999999999999988754 455555555543321  11     


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccch
Q 018940          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (348)
Q Consensus       119 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~  198 (348)
                      ... ....   .....+.+.+.+.......++++|..+ +++|++..++.+....+|+.+++.+.+.+.          +
T Consensus       292 ~~~-~~~~---~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~----------~  356 (377)
T TIGR00890       292 MLN-DVLF---LATVALVFFTWGGTISLFPSLVSDIFG-PANSAANYGFLYTAKAVAGIFGGLIASHAL----------T  356 (377)
T ss_pred             cch-hHHH---HHHHHHHHHHhccchhccHHHHHHHhh-hhhhhhHhHHHHHHHHHHHHHHHHHHHHHH----------h
Confidence            111 1111   111123445555444455667778774 678999999998888888887766654443          2


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q 018940          199 ENQYRWIAYSSIFIGCCF  216 (348)
Q Consensus       199 ~~g~~~~~~i~~~i~~~~  216 (348)
                      ..||++.+.+.+++.++.
T Consensus       357 ~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       357 EIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hhchhhHHHHHHHHHHHh
Confidence            457888887776655543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.14  E-value=1.6e-09  Score=102.14  Aligned_cols=270  Identities=14%  Similarity=0.085  Sum_probs=143.1

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHH
Q 018940           56 LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI  135 (348)
Q Consensus        56 ~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  135 (348)
                      .++...+.+-.+..+..+++|.++|++.||+||||.+. ...+++.++.+..-   +|...   ++.........+...+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG-~~liImIi~t~~~~---~s~~~---~~~~~~m~~L~~~R~~  153 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYG-KELIIMIICSALSG---LSVGT---TSPLGVMMTLCFFRFL  153 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhh-HHHHHHHHHHHHhc---cCCCC---CCCcchhhHHHHHHHH
Confidence            67788899999999999999999999999999999975 45566666665332   23221   1111111222222346


Q ss_pred             HHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccC----Cc-ccchhhHHHHHHHHHH
Q 018940          136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA----KT-HADLENQYRWIAYSSI  210 (348)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~----~~-~~~~~~g~~~~~~i~~  210 (348)
                      +|+|.+.-++-..+..+|.+ +++.|+...+.....+..|...+++++..+...+-.    .. ....+.-||..+-+.+
T Consensus       154 LGiGIGGDYPlSAtI~SE~a-n~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~  232 (538)
T KOG0252|consen  154 LGIGIGGDYPLSATIMSESA-NKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGA  232 (538)
T ss_pred             hhccccCCCcchHHHhhhhh-hhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHH
Confidence            77877765555555556655 567788765544444455544444444333332211    10 0012345998886655


Q ss_pred             HHHHHHHHHHHhhcccccccc-----c-----cc-CC----------------chhHHH---HHHHHHh---HHHHHHHH
Q 018940          211 FIGCCFVGIFLSRTEEPRLKM-----G-----LR-GN----------------SHARIS---WAYWFKK---ILYYQVAL  257 (348)
Q Consensus       211 ~i~~~~~ll~~~~~~e~~~~~-----~-----~~-~~----------------~~~~~~---~~~~~~~---~~~~~~~l  257 (348)
                      ++++ ..+.....+||++.-+     .     ++ ++                ..++..   +...+..   +++.-.++
T Consensus       233 vpa~-~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~  311 (538)
T KOG0252|consen  233 VPAL-LVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAG  311 (538)
T ss_pred             HHHH-HHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence            5444 4455556678853211     0     00 00                001111   1122221   22233444


Q ss_pred             HHHHHHHHHHhhhHHHHHHHhhcccccchh--------hhHHhHHHH-HHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHH
Q 018940          258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSA--------KALVPAIIY-ICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW  327 (348)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~--------~~~~~~~~~-~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~  327 (348)
                      ..++.-.+.+....+...-+. +.+..+..        .+....+.. .+.+.|..+.... |++|||  .+-.-|..++
T Consensus       312 ~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk--~iq~~GF~~~  388 (538)
T KOG0252|consen  312 TWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK--YIQLMGFFIM  388 (538)
T ss_pred             HHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH--HHHHhhHHHH
Confidence            555555566666655554444 23433321        111112211 2223344444444 999999  8888888777


Q ss_pred             HHHHHhHhhc
Q 018940          328 VFCGAGILIL  337 (348)
Q Consensus       328 ~v~~~~~~~~  337 (348)
                      ++-.+.+.+.
T Consensus       389 ~i~~~~~~~~  398 (538)
T KOG0252|consen  389 TIFFFVIAGP  398 (538)
T ss_pred             HHHHHHHcCC
Confidence            7766555544

>TIGR00897 2A0118 polyol permease family

Probab=99.14  E-value=6.1e-09  Score=99.97  Aligned_cols=167  Identities=13%  Similarity=0.094  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCC
Q 018940           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP  113 (348)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~  113 (348)
                      +...........++|.|+++.|.|+.+.+.+.....+...++.++.|+++||+||||+....+.+..++....+..  .|
T Consensus       232 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~--~~  309 (402)
T TIGR00897       232 IINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY--IP  309 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH--HH
Confidence            3334444455678888887779999999999999999999999999999999999887533333333333222110  11


Q ss_pred             CcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 018940          114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK  193 (348)
Q Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~  193 (348)
                      ..  ...+.....+.    ..+.+.+.+.. .+..+...+..  |++|++..++.+....+|+.+++.+.+.+++     
T Consensus       310 ~~--~~~~~~~~~~~----~~~~G~~~~~~-~~~~~~~~~~~--~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~-----  375 (402)
T TIGR00897       310 QH--FGHSFAVALII----AIALGIFLAGY-VPLAAVFPTLA--PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG-----  375 (402)
T ss_pred             Hc--cCCcHHHHHHH----HHHHHHHHHHH-HHHHHHHHhhC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence            00  01122211111    12445444443 34445555543  4689999999999988888887766655553     


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHH
Q 018940          194 THADLENQYRWIAYSSIFIGCCFVGIFL  221 (348)
Q Consensus       194 ~~~~~~~g~~~~~~i~~~i~~~~~ll~~  221 (348)
                           ..|++..+.+.+++.++..++.+
T Consensus       376 -----~~g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       376 -----FFGAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             -----hcchHHHHHHHHHHHHHHHHHHH
Confidence                 34677777777666665555544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.12  E-value=1.4e-08  Score=97.18  Aligned_cols=161  Identities=12%  Similarity=0.029  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCccc
Q 018940           39 TAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (348)
Q Consensus        39 ~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~  117 (348)
                      .......++|.|+++. |.++.+.|.+.+...+...++.++.|+++||+||||.+. .+.....+.......   +    
T Consensus       231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~-~~~~~~~~~~~~~~~---~----  302 (393)
T PRK15011        231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMR-VAAVAGVCFYAGMLM---A----  302 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH-HHHHHHHHHHHHHHH---H----
Confidence            3344456788888776 999999999988888888889999999999999998653 444443333322211   1    


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc
Q 018940          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (348)
Q Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~  197 (348)
                        .+.........    +.+++.+.......+...|..|  ++|+++.++.+...++|..+++.+.+.+.+         
T Consensus       303 --~~~~~~l~~~~----l~~~~~g~~~~~~~~~~~~~~p--~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~---------  365 (393)
T PRK15011        303 --HSPAILLGLQL----LNAIYIGILGGIGMLYFQDLMP--GQAGSATTLYTNTSRVGWIIAGSLAGIVAE---------  365 (393)
T ss_pred             --hhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence              12222211111    2222333322233345566653  468888888888888888887776655542         


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018940          198 LENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (348)
Q Consensus       198 ~~~g~~~~~~i~~~i~~~~~ll~~~~~~e  226 (348)
                       ..+|+..+.+.+++.++..++ .+..||
T Consensus       366 -~~g~~~~~~~~~~~~~~~~~~-~~~~~~  392 (393)
T PRK15011        366 -IWNYHAVFWFALVMIIATLFC-LLRIKD  392 (393)
T ss_pred             -HhhhHHHHHHHHHHHHHHHHH-HHhhcC
Confidence             347888887766555554433 344454

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.11  E-value=4.9e-09  Score=96.73  Aligned_cols=162  Identities=10%  Similarity=-0.030  Sum_probs=99.7

Q ss_pred             CCCCCCCCCCCCchHhhHHhhhhhHHHHHHHHH------HHHHHHHHHhh-----CCChhHHHHHHHHHHHHHHhhhhhh
Q 018940           11 IENDDSFTQPVGRWSVLYYGSGHMLNDITAACW------FTYLLLFLTDI-----GLSPRGAAAVMLSGQIADGFATIFI   79 (348)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~l~~~~~~~-----g~s~~~~g~i~~~~~i~~~i~~p~~   79 (348)
                      .++|+++++..+.++...-++..+..-+...+.      ..+....++..     +.+..-.|.+-+.+.+...+.+|.+
T Consensus         9 ~~~kk~q~~g~P~~~~~~v~vv~~~~ll~l~~~~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~   88 (451)
T KOG2615|consen    9 ALRKKEQKRGFPALALDVVAVVSLSLLLPLLLVSSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLW   88 (451)
T ss_pred             ccchHHHhcCCchhhcceeeeeehhhhhhHhhccchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhh
Confidence            455677777777776544444444333322111      12222222221     3355678999999999999999999


Q ss_pred             HhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcc
Q 018940           80 GELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST  159 (348)
Q Consensus        80 G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~  159 (348)
                      |.++||+|||.. ++.+++..+++.. +|.  .      +.+.. .   +.+..++.|...+- -....|+++|+.+ +|
T Consensus        89 G~~SD~yGRkpv-ll~c~~~va~s~l-l~~--~------S~~F~-a---fv~aR~l~Gi~kgn-l~v~rAiisdV~s-ek  152 (451)
T KOG2615|consen   89 GCLSDRYGRKPV-LLACLIGVALSYL-LWA--L------SRNFA-A---FVLARFLGGIFKGN-LSVIRAIISDVVS-EK  152 (451)
T ss_pred             hhhhhhhCchHH-HHHHHHHHHHHHH-HHH--H------HHHHH-H---HHHHHHhhhhccCc-hHHHHHHHHhhcC-hh
Confidence            999999999755 6677777777553 331  0      11221 2   22212344554433 3346689999985 58


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          160 SRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (348)
Q Consensus       160 ~R~~~~~~~~~~~~ig~~~~~~~~~~~~~  188 (348)
                      +|+...+.......+|-++++.+++-+..
T Consensus       153 ~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  153 YRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             hccceeeeeehhhhcchhhcchhhhHHHh
Confidence            99998888777778888777766554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.10  E-value=8.5e-09  Score=98.76  Aligned_cols=134  Identities=14%  Similarity=0.105  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccC
Q 018940           39 TAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (348)
Q Consensus        39 ~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~  118 (348)
                      .......++|.|+++.|.++.+.|.+.+...+...++.++.|+++||+||||.+. .+.+...+....+..  .+     
T Consensus       235 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~~--~~-----  306 (406)
T PRK11551        235 VLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVL-LIYAGILASLAALAA--AP-----  306 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHh--cC-----
Confidence            3344557788888888999999999999999999999999999999999988754 344444444332221  11     


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (348)
Q Consensus       119 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~  187 (348)
                        +.....+    ...+.+.+.+.......++.++..+ +++|++..++.+....+|..+++.+.+.+.
T Consensus       307 --~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  368 (406)
T PRK11551        307 --SFAGMLL----AGFAAGLFVVGGQSVLYALAPLFYP-TQVRGTGVGAAVAVGRLGSMAGPLLAGQLL  368 (406)
T ss_pred             --cHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHcc-hhhhhhhhhHHHHhhhHHHHHHhhhHhhhh
Confidence              2221111    1124455555555566678888875 578999999988888888877766655544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.10  E-value=6.8e-09  Score=100.03  Aligned_cols=245  Identities=9%  Similarity=0.041  Sum_probs=138.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhh--CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCC-chHHHHHHHHHHHHHHHH
Q 018940           30 GSGHMLNDITAACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH-FKIWHGAGSVLVAVSFSS  106 (348)
Q Consensus        30 ~~g~~~~~~~~~~~~~~l~~~~~~~--g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Gr-rr~~i~~~~~~~~i~~~~  106 (348)
                      .+.++....-.++..+=.-+|++++  +.+++..|++.+...+..++.+|.+|+.+.|.|+ |||++ .+.+..+++-. 
T Consensus        40 ~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli-~s~ii~~~g~l-  117 (488)
T KOG2325|consen   40 LLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLI-VSFLIAIIGNL-  117 (488)
T ss_pred             HHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHH-HHHHHHHHHHH-
Confidence            3334444444433334445788885  8888999999999999999999999999999986 88964 68888777763 


Q ss_pred             HhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (348)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~  186 (348)
                      ++. ++..  .+..........|    ++.|+|.+.. ..+-+++++.+ ..+||.++.+....+..+|.++++.+ ++.
T Consensus       118 lY~-~l~~--~~~~~~y~mL~~R----~l~Gvg~~n~-a~lR~Y~a~~s-~~~dR~rA~a~~~~~~vlg~ilGp~~-q~~  187 (488)
T KOG2325|consen  118 LYL-ALAY--VPNGVKYLMLVAR----ILTGVGVGNF-AVLRAYIADAS-TVEDRPRAFAATSGGFVLGIILGPTI-QLA  187 (488)
T ss_pred             HHH-HHHh--cccchHHHHHHHH----HHcCcCcccH-HHHHHHHHhcc-CccchHHHHHHhhhHHHHHHHHhHHH-HHH
Confidence            221 0111  1111222233333    3556665433 33566777765 36789998887766667777776655 344


Q ss_pred             HHhccCCc----ccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC------CchhHHHHHHHHHhHHHHH--
Q 018940          187 FSVSTAKT----HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG------NSHARISWAYWFKKILYYQ--  254 (348)
Q Consensus       187 ~~~~~~~~----~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--  254 (348)
                      +..++.+.    ++..-..+..+.++.+++.++..++..+..+|.+.+..+++      +++.++..+  .-|.++..  
T Consensus       188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~  265 (488)
T KOG2325|consen  188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEKSDIEKVK--KPKLDWVAVL  265 (488)
T ss_pred             HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhccchhhhc--cCChhHHHHH
Confidence            44444221    00011124445556667777777777788888644322111      111111111  11223222  


Q ss_pred             -HHHHHHHHHHHHHhhhHHHHHHHhhcccccchhh
Q 018940          255 -VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAK  288 (348)
Q Consensus       255 -~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~  288 (348)
                       +.+..+...+......+-.+....+..+...++.
T Consensus       266 vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~a  300 (488)
T KOG2325|consen  266 VCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEA  300 (488)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHhccccchH
Confidence             2333444445555545566666666667665543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.09  E-value=1.3e-08  Score=97.22  Aligned_cols=162  Identities=15%  Similarity=0.057  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCccc
Q 018940           38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (348)
Q Consensus        38 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~  117 (348)
                      ........+++.|+++.|.+  +.+.......+...++.++.|++.||+||||.+ ..+....+++...+..   .    
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~-~~~~~~~~~~~~~~~~---~----  299 (399)
T PRK05122        230 IGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVA-IVSLLVEILGLLLLWL---A----  299 (399)
T ss_pred             HHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHH---h----
Confidence            33445567888888776663  445666777888888999999999999998865 3455555555433321   1    


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc
Q 018940          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (348)
Q Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~  197 (348)
                        .+.....    +...+.+++.+.......+...+.. ++++|++..++.+....+|..+++.+.+.+.          
T Consensus       300 --~~~~~~~----~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~----------  362 (399)
T PRK05122        300 --PSPWMAL----IGAALTGFGFSLVFPALGVEAVKRV-PPQNRGAALGAYSVFLDLSLGITGPLAGLVA----------  362 (399)
T ss_pred             --ccHHHHH----HHHHHHHHhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence              1222121    1123566666655555455566665 4678999999988888888776655544433          


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018940          198 LENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (348)
Q Consensus       198 ~~~g~~~~~~i~~~i~~~~~ll~~~~~~e  226 (348)
                      +..||++.+.+.+++.++..++..+..++
T Consensus       363 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        363 SWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            23478888887776666655555544333

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.09  E-value=1.5e-09  Score=87.04  Aligned_cols=136  Identities=16%  Similarity=0.043  Sum_probs=90.8

Q ss_pred             HHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 018940           66 LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQV  145 (348)
Q Consensus        66 ~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  145 (348)
                      +...+...+.+++.|+++||+||||.++ .+.....+.......   .      .+.......    ..+.+.+.+....
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~-~~~~~~~~~~~~~~~---~------~~~~~~~~~----~~~~g~~~~~~~~   70 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLL-VGLFIFVLSTAMFAL---S------SNITVLIIA----RFLQGFGAAFALV   70 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHH-HHHHHHHHHHHHHHH---h------ccHHHHHHH----HHHHHHHHHHHHH
Confidence            3456777889999999999999998865 455555555433321   1      122222121    2356677777777


Q ss_pred             hHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018940          146 AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE  225 (348)
Q Consensus       146 ~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~  225 (348)
                      ...++..|..+ +++|++..+..+....+|..+++.+.+.+.          +..+|++.+.+.+++.++..+...+..|
T Consensus        71 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        71 AGAALIADIYP-PEERGVALGLMSAGIALGPLLGPPLGGVLA----------QFLGWRAPFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             hHHHHHHHHCC-hhhhhHHHHHHHHhHHHHHHHhHHhHHHHh----------cccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence            77788888874 578999999988888888877766554433          1346888888777777666666666555


Q ss_pred             c
Q 018940          226 E  226 (348)
Q Consensus       226 e  226 (348)
                      |
T Consensus       140 ~  140 (141)
T TIGR00880       140 E  140 (141)
T ss_pred             C
Confidence            5

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.08  E-value=1.2e-08  Score=99.04  Aligned_cols=171  Identities=10%  Similarity=-0.005  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhccc--CCchHHHHHHHHHHHHHHHHHhcC
Q 018940           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVAVSFSSVFGG  110 (348)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~--Grrr~~i~~~~~~~~i~~~~l~~~  110 (348)
                      +........+..++|.|+++. |.|..+.+...+...+...++.++.|+++||+  ++|++......+...+....+.. 
T Consensus       253 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~-  331 (434)
T PRK11663        253 VLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL-  331 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH-
Confidence            333444445567889999775 99999999999999999999999999999998  33444322222222222211111 


Q ss_pred             cCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018940          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~  190 (348)
                       .+     ..+.......+    ...+.+............+|.. ++++|++..++.+....+|+.+++.+.+.+.+  
T Consensus       332 -~~-----~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~--  398 (434)
T PRK11663        332 -MP-----FASYVMQAACF----FTIGFFVFGPQMLIGMAAAECS-HKEAAGAATGFVGLFAYLGAALSGYPLAKVLE--  398 (434)
T ss_pred             -cc-----cccHHHHHHHH----HHHHHHHhhHHHHHHHHHHhcc-cHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH--
Confidence             12     11211111111    1222211111111223445655 46789999999999999988887666555442  


Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018940          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (348)
Q Consensus       191 ~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e  226 (348)
                              ..||+..++..+++.++..+...+..++
T Consensus       399 --------~~g~~~~f~~~~~~~~~~~~~~~~~~~~  426 (434)
T PRK11663        399 --------IWHWTGFFVVISIAAGISALLLLPFLNA  426 (434)
T ss_pred             --------hcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                    3568888887777777766666555554

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.07  E-value=1.2e-11  Score=122.56  Aligned_cols=285  Identities=10%  Similarity=0.039  Sum_probs=1.4

Q ss_pred             HHHHHHHHHHH----hhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCccc
Q 018940           42 CWFTYLLLFLT----DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (348)
Q Consensus        42 ~~~~~l~~~~~----~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~  117 (348)
                      +...|...-++    +++++.++.|++.+.+-+...+..++..++.+|. +|..|+-.|.++++++.++..   +|....
T Consensus        17 ~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~---lPhf~~   92 (539)
T PF03137_consen   17 MVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFA---LPHFLS   92 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHh---ccHhhc
Confidence            33445444333    3499999999999999999999999999999985 556678888888888875432   454221


Q ss_pred             Cc---------------------------------------ccchh-HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccC
Q 018940          118 ST---------------------------------------STLKV-ETISYCVFAAIFNVGWAATQVAHMSMVNCITLN  157 (348)
Q Consensus       118 ~~---------------------------------------~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~  157 (348)
                      +.                                       .+... ....+++.-++.|+|.+..++--.+++.|.++ 
T Consensus        93 ~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~-  171 (539)
T PF03137_consen   93 GPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVS-  171 (539)
T ss_dssp             -----------------------------------------------------------SSS------------------
T ss_pred             CCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccc-
Confidence            10                                       00000 01111111123444444444444567777663 


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc----------ccchh-h-HHHHHHHHHHHHHHHHHHHHHhhcc
Q 018940          158 STSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT----------HADLE-N-QYRWIAYSSIFIGCCFVGIFLSRTE  225 (348)
Q Consensus       158 ~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~----------~~~~~-~-g~~~~~~i~~~i~~~~~ll~~~~~~  225 (348)
                      +++-....++.+....+|..++..+++..+....+.+          +.|+. . .|..-|++.+++.++.++..+.+-|
T Consensus       172 ~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk  251 (539)
T PF03137_consen  172 KKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPK  251 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            4455566777777777777776666655554322210          11111 1 3655566677766666655544433


Q ss_pred             ccccc---------cccc-----------CC---------chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 018940          226 EPRLK---------MGLR-----------GN---------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY  276 (348)
Q Consensus       226 e~~~~---------~~~~-----------~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y  276 (348)
                      +-+..         ++++           ++         ++.....+.+++||.+....+...+......+..+|.|+|
T Consensus       252 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKy  331 (539)
T PF03137_consen  252 KLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKY  331 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            31111         0000           00         1112235678899998888888877788889999999999


Q ss_pred             HhhcccccchhhhHHhHH-HHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 018940          277 VINDLRMGQSAKALVPAI-IYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG  331 (348)
Q Consensus       277 l~~~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~  331 (348)
                      ++.+.+.+++.++++..+ ..-++.+|.+++|++ +|++-+.|+......+...++.
T Consensus       332 lE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~  388 (539)
T PF03137_consen  332 LESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSV  388 (539)
T ss_dssp             ---------------------------------------------------------
T ss_pred             HHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence            999999998766644333 323556788888987 9988766666555555444444

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.07  E-value=9e-09  Score=95.52  Aligned_cols=164  Identities=16%  Similarity=0.174  Sum_probs=116.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCch-HHHHHHHHHHHHHHHHHhc
Q 018940           32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFK-IWHGAGSVLVAVSFSSVFG  109 (348)
Q Consensus        32 g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr-~~i~~~~~~~~i~~~~l~~  109 (348)
                      ..+...........+.+.+.++. |.++.+.+.+.....+...++.++.|+++||+|||+ .+ ..+.....++......
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~  261 (352)
T cd06174         183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLL-LIGLLLAALGLLLLAL  261 (352)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHH
Confidence            33344444455567888888887 999999999999999999999999999999999988 54 4566666665543321


Q ss_pred             CcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018940          110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~  189 (348)
                        .       .+.....+.    ..+.+.+.+.......++..|..+ +|+|++..+..+....+|..+++.+.+.+.+ 
T Consensus       262 --~-------~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~-  326 (352)
T cd06174         262 --A-------PSLALLLVA----LLLLGFGLGFAFPALLTLASELAP-PEARGTASGLFNTFGSLGGALGPLLAGLLLD-  326 (352)
T ss_pred             --h-------ccHHHHHHH----HHHHHHHHhccchhHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence              1       122222121    235677777777778888888874 5889999999999988888887666555432 


Q ss_pred             ccCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 018940          190 STAKTHADLENQYRWIAYSSIFIGCCFVGIF  220 (348)
Q Consensus       190 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~  220 (348)
                               ..+|++.+.+.+++.++..++.
T Consensus       327 ---------~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         327 ---------TGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             ---------ccCcchHHHHHHHHHHHHHHHh
Confidence                     3567888877777666655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.07  E-value=6.3e-09  Score=104.24  Aligned_cols=291  Identities=10%  Similarity=0.046  Sum_probs=180.7

Q ss_pred             HHHHHHHHHHHh----hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCccc
Q 018940           42 CWFTYLLLFLTD----IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (348)
Q Consensus        42 ~~~~~l~~~~~~----~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~  117 (348)
                      +...|+..-.+.    ++++.++.|++.+.+-+...+...++.+..-|..|- .|+-.|.++++++.++..   +|..+.
T Consensus       111 l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrP-r~Ig~G~~~m~lgsll~a---lPHf~~  186 (735)
T KOG3626|consen  111 LYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRP-RWIGIGLVLMGLGSLLFA---LPHFFS  186 (735)
T ss_pred             hhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCcc-ceeeechhHHHHHHHHHh---ChHHhc
Confidence            334555444432    399999999999999999999999999999887664 467788888888876543   352111


Q ss_pred             ----------------C----------------------c----ccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcc
Q 018940          118 ----------------S----------------------T----STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCIT  155 (348)
Q Consensus       118 ----------------~----------------------~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~  155 (348)
                                      +                      .    .+.....+.+.+.-.+.|+|.+...+--.+++.|.+
T Consensus       187 ~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnv  266 (735)
T KOG3626|consen  187 GPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNV  266 (735)
T ss_pred             CcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccc
Confidence                            0                      0    000001112221113444554444444445666655


Q ss_pred             cCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--c-----ccchhh--HHHHHHHHHHHHHHHHHHHHHhhccc
Q 018940          156 LNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK--T-----HADLEN--QYRWIAYSSIFIGCCFVGIFLSRTEE  226 (348)
Q Consensus       156 ~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~--~-----~~~~~~--g~~~~~~i~~~i~~~~~ll~~~~~~e  226 (348)
                      . +++-....++.++...+|.+++..++........+.  +     ..|+.+  .|+.-|++++.+.++.++..+++-+|
T Consensus       267 k-~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~  345 (735)
T KOG3626|consen  267 K-KKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKE  345 (735)
T ss_pred             c-ccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            3 334456677777777777777766665555543321  0     112211  46666888888888888777776655


Q ss_pred             ccccc-----c-------cc----CC-------chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccc
Q 018940          227 PRLKM-----G-------LR----GN-------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM  283 (348)
Q Consensus       227 ~~~~~-----~-------~~----~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~  283 (348)
                      .+...     +       ++    ++       ++.....+.+++||-+....+...+......+..+|+|.|++.+++.
T Consensus       346 lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~  425 (735)
T KOG3626|consen  346 LPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGI  425 (735)
T ss_pred             CccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCC
Confidence            33211     0       00    00       12233567889999988888888888888999999999999999999


Q ss_pred             cchhhhHHhHHHHH-HHHHHHHHHHHH-HHhhhhhhHHHHHHHHH---HHHHHHhHhhc
Q 018940          284 GQSAKALVPAIIYI-CSFIVSILLQEM-AWTGQRLKAYYSAGGVL---WVFCGAGILIL  337 (348)
Q Consensus       284 ~~~~~~~~~~~~~~-~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l---~~v~~~~~~~~  337 (348)
                      ++..+.++.....+ +..+|.+++|++ +|+.-+.|.+..+.++.   ..+++...+++
T Consensus       426 sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~i  484 (735)
T KOG3626|consen  426 SASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFI  484 (735)
T ss_pred             CHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEe
Confidence            98766655433333 445677888887 88887765554444443   33333444444

>PRK03545 putative arabinose transporter; Provisional

Probab=99.06  E-value=2.6e-08  Score=95.11  Aligned_cols=160  Identities=11%  Similarity=0.022  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc
Q 018940           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (348)
Q Consensus        42 ~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~  120 (348)
                      ....++++|+++. |.|+.+.|.+.+...+...+++++.|+++||+|||+. . .+.....++...+..  .+      .
T Consensus       223 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~-~~~~~~~~~~~~l~~--~~------~  292 (390)
T PRK03545        223 TAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-L-IAIALLLVCLLLLLP--AA------N  292 (390)
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-H-HHHHHHHHHHHHHHH--Hh------c
Confidence            3456788888886 9999999999999999999999999999999998754 3 333333333322211  01      1


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhh
Q 018940          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (348)
Q Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~  200 (348)
                      +.....+    ...+.+++.........+.+.+..  +++|+++.++.+....+|..+++.+.+.+.+          ..
T Consensus       293 ~~~~~~~----~~~l~g~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~----------~~  356 (390)
T PRK03545        293 SEWHLSV----LSIFWGIAIMCIGLAMQVKVLKLA--PDATDVAMALFSGIFNIGIGAGALLGNQVSL----------HL  356 (390)
T ss_pred             hHHHHHH----HHHHHHHHHhcchHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cc
Confidence            2221111    112455555544444556666654  3578888888877777887776666555442          35


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018940          201 QYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (348)
Q Consensus       201 g~~~~~~i~~~i~~~~~ll~~~~~~e~  227 (348)
                      |++..+...+.+.++..++.....+++
T Consensus       357 g~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (390)
T PRK03545        357 GLSSIGYVGAALALAALVWSILIFRRF  383 (390)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHcccc
Confidence            677777777777766666666655543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.06  E-value=2e-08  Score=96.80  Aligned_cols=162  Identities=10%  Similarity=-0.060  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc
Q 018940           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (348)
Q Consensus        42 ~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~  120 (348)
                      ....++|.|.++. |.++.+.|++.+...+...++.++.|++.||.+++|.+ ..+....++....+..  .+       
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l-~~~~~~~~~~~~~~~~--~~-------  310 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLM-LLSTLGSFLAVGLFGL--MP-------  310 (417)
T ss_pred             hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHH-HHHHHHHHHHHHHHHc--cc-------
Confidence            3456788899885 99999999999999999999999999999997776654 4455555555433221  11       


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhh
Q 018940          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (348)
Q Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~  200 (348)
                      +......    ...+.+.+.+.......+.+.+..+ +++|++..++.+....+|..+++.+.+.+.+.          .
T Consensus       311 ~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~----------~  375 (417)
T PRK10489        311 MWILAVL----CLALFGYLSAISSLLQYTLLQTQTP-DEMLGRINGLWTAQNVTGDAIGAALLGGLGAM----------M  375 (417)
T ss_pred             hHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH----------h
Confidence            2111111    1124555555555555677777764 56799999999888888888887776666532          3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018940          201 QYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (348)
Q Consensus       201 g~~~~~~i~~~i~~~~~ll~~~~~~e~~  228 (348)
                      |.+..+.+.+++..+..++....++|.+
T Consensus       376 g~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        376 TPVASASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            4555566666666565566666666643

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.05  E-value=2e-08  Score=94.86  Aligned_cols=159  Identities=11%  Similarity=0.049  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCc
Q 018940           41 ACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (348)
Q Consensus        41 ~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~  119 (348)
                      .....++|.|+++. |.++.+.|.+.........+..++.|+++||+||||.+. .+.+...+.......         .
T Consensus       216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~-~~~~~~~~~~~~~~~---------~  285 (375)
T TIGR00899       216 ILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLML-LAALAGVAFYTGLAA---------D  285 (375)
T ss_pred             HHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHH-HHHHHHHHHHHHHHH---------H
Confidence            34456678888775 999999999988888888888999999999999998754 344333333222110         0


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchh
Q 018940          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE  199 (348)
Q Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~  199 (348)
                      .+.+....    ...+.+.+.+.......+...|..+  ++|++..+..+...++|..+++.+.+.+.+          .
T Consensus       286 ~~~~~~~~----~~~~~g~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~----------~  349 (375)
T TIGR00899       286 NSLWALLM----LQLLNAIFIGILAGIGMLYFQDLMP--GRAGAATTLYTNTGRVGWIIAGSVGGILAE----------R  349 (375)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------h
Confidence            12221111    1124455555555555566777653  456788888887777888777666555442          3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018940          200 NQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (348)
Q Consensus       200 ~g~~~~~~i~~~i~~~~~ll~~~~~~e  226 (348)
                      .||+..+.+.++..++..++. ..+||
T Consensus       350 ~g~~~~~~~~~~~~~~~~~~~-~~~~~  375 (375)
T TIGR00899       350 WSYHAVYWFAIVMLIVALFCL-LLIKD  375 (375)
T ss_pred             ccchhHHHHHHHHHHHHHHHH-heecC
Confidence            467777777666555544443 33443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10504 putative transporter; Provisional

Probab=99.05  E-value=3.3e-08  Score=96.81  Aligned_cols=144  Identities=11%  Similarity=-0.034  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCC
Q 018940           35 LNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP  113 (348)
Q Consensus        35 ~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~  113 (348)
                      ...........+.|.|++.. |.++.+.|++.....+...+..++.|+++||+||||.+. .+....++....+..  .+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~-~~~~~~~~~~~~~~~--~~  348 (471)
T PRK10504        272 AGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLV-ATTLGLALVSLLFML--VA  348 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH-HHHHHHHHHHHHHHh--cc
Confidence            33333444445667777765 999999999999999999999999999999999988754 455555555433321  11


Q ss_pred             CcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018940          114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (348)
Q Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~  190 (348)
                           ..+..+...   +...+.+++.+....+..++..+..+ +++|+..+++.+....+|..+++.+.+.+++..
T Consensus       349 -----~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        349 -----LLGWYYLLP---FVLFLQGMVNSTRFSSMNTLTLKDLP-DNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             -----ccccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCC-HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 111111111   11124456666666667777777764 578999999988888899888888877776654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.05  E-value=1.9e-08  Score=98.22  Aligned_cols=171  Identities=9%  Similarity=-0.044  Sum_probs=96.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhccc--CCchHHHHHHHHHHHHHHHHH
Q 018940           31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVAVSFSSV  107 (348)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~--Grrr~~i~~~~~~~~i~~~~l  107 (348)
                      +..+...........++|.|+++. |.+..+.+.+..+..+...++.++.|+++||+  |||+..........+++...+
T Consensus       260 l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~  339 (452)
T PRK11273        260 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY  339 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHH
Confidence            333333444455568999999986 99999999999999999999999999999998  444432222222222332222


Q ss_pred             hcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHH-HHHHHHHH
Q 018940          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS-LYAIAFIV  186 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~-~~~~~~~~  186 (348)
                      ..  .+     ..+.....+  .  ...++.+.........++..|..+ +++|++.+++.+....+|+.+ ++.+.+.+
T Consensus       340 ~~--~~-----~~~~~~~~~--~--~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l  407 (452)
T PRK11273        340 WL--NP-----AGNPTVDMA--C--MIVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVGYT  407 (452)
T ss_pred             HH--hc-----ccChHHHHH--H--HHHHHHHHHhHHHHHHHHHHHHcC-hhhhhhHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            11  11     111111111  1  112222211111122344556664 578999999887776676544 34443333


Q ss_pred             HHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 018940          187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR  223 (348)
Q Consensus       187 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~  223 (348)
                      .          +..||+..+.++++.+++..+....+
T Consensus       408 ~----------~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        408 V----------DFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             H----------HHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            3          24568888877766655554444433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.05  E-value=7e-09  Score=97.75  Aligned_cols=173  Identities=10%  Similarity=-0.007  Sum_probs=106.0

Q ss_pred             hhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHH-
Q 018940           26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS-  103 (348)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~-  103 (348)
                      .....+..+...........+++.|+++. |.|+.+.|.+.++..+...++.++.|+++||+|||+..+........+. 
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (399)
T TIGR00893       217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG  296 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence            34444555555566666778899999886 9999999999999999999999999999999999862221111111111 


Q ss_pred             ---HHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHH
Q 018940          104 ---FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (348)
Q Consensus       104 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~  180 (348)
                         ....+.  .+     ..+..+.....    ...+.+.........++.+|..+ +++|++..++.+....+|..+++
T Consensus       297 ~~~~~~~~~--~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~~~  364 (399)
T TIGR00893       297 LVLSLLMFA--TN-----YVNIPYAALAL----VALGFFGLGAGAIGWALISDNAP-GNIAGLTGGLINSLGNLGGIVGP  364 (399)
T ss_pred             HHHHHHHHH--hc-----cchhHHHHHHH----HHHHHhchhhhhHHHHHHHhhcC-hhHHHHHHHHHHHHHHHhhhhhh
Confidence               111111  01     01111111111    12222222245566778888874 67899999999888888887766


Q ss_pred             HHHHHHHHhccCCcccchhhH-HHHHHHHHHHHHHHHHHHH
Q 018940          181 AIAFIVFSVSTAKTHADLENQ-YRWIAYSSIFIGCCFVGIF  220 (348)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~g-~~~~~~i~~~i~~~~~ll~  220 (348)
                      .+.+.+.+          ..| |++.+.+.+++.++..+..
T Consensus       365 ~i~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       365 IVIGAIAA----------TTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHhhhhcc----------CCCchhHHHHHHHHHHHHHHHHH
Confidence            55444332          234 7777776666555554443

>PRK12382 putative transporter; Provisional

Probab=99.04  E-value=2.1e-08  Score=95.77  Aligned_cols=159  Identities=18%  Similarity=0.064  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCccc
Q 018940           38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (348)
Q Consensus        38 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~  117 (348)
                      ........+.+.|+++.|.+.  .+.......+...+++++.|++.||+||||.. ..+....+++...+..  .+    
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-~~~~~~~~~~~~~~~~--~~----  300 (392)
T PRK12382        230 VGFAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA-IVSLLVETVGLLLLWL--AP----  300 (392)
T ss_pred             HHHhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh-HHHHHHHHHHHHHHHH--cc----
Confidence            334455677888887777654  45566677788888999999999999998875 4555555555543321  11    


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc
Q 018940          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (348)
Q Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~  197 (348)
                         +.....+.    ..+.+++++.......+...+.. ++|+|++..++.+....+|..+++.+.+.+.          
T Consensus       301 ---~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~----------  362 (392)
T PRK12382        301 ---TAWVALAG----AALTGAGCSLIFPALGVEVVKRV-PSQVRGTALGGYAAFQDIAYGVSGPLAGMLA----------  362 (392)
T ss_pred             ---cHHHHHHH----HHHHHHHHHhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence               22212111    12556666655555566666766 4678999999998888888887766655544          


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhh
Q 018940          198 LENQYRWIAYSSIFIGCCFVGIFLSR  223 (348)
Q Consensus       198 ~~~g~~~~~~i~~~i~~~~~ll~~~~  223 (348)
                      +..||++.+.+.+++.++..++..+.
T Consensus       363 ~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        363 TSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            24578888888777666666555444

>PRK03699 putative transporter; Provisional

Probab=99.04  E-value=3.1e-08  Score=94.80  Aligned_cols=156  Identities=7%  Similarity=-0.034  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCc
Q 018940           37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (348)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~  115 (348)
                      ......+..++|.|+++. |.|+.+.|.+.+...+...++.++.|+++||+||||.+.. .....++....+..   .  
T Consensus       218 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~-~~~~~~~~~~~~~~---~--  291 (394)
T PRK03699        218 ILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTV-LAGLALVLMYLFVN---T--  291 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHH-HHHHHHHHHHHHHH---c--
Confidence            333445668899999876 9999999999999999999999999999999999987653 43333333322211   1  


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 018940          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (348)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  195 (348)
                          .+..+....    ....+++.+.......+...+..  ++++++..+.......+|..+++.+.+.+.+       
T Consensus       292 ----~~~~~~~~~----~~~~G~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~-------  354 (394)
T PRK03699        292 ----DDPSHLLYA----ILGLGFFSSAIYTTIITLGSQQT--KVASPKLVNFILTCGTIGTMLTFVVTSPIVA-------  354 (394)
T ss_pred             ----CCchHHHHH----HHHHHHHHHHHHHHHHHHHHHHc--cCCCHHHHHHHHHhhhHHHHHHHHHHHHHHH-------
Confidence                122222111    12344444433333444555544  2345566666666666777776665555543       


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHH
Q 018940          196 ADLENQYRWIAYSSIFIGCCFVG  218 (348)
Q Consensus       196 ~~~~~g~~~~~~i~~~i~~~~~l  218 (348)
                         ..|++..+++.+++..+..+
T Consensus       355 ---~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        355 ---HFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             ---HhCchhhhhhhHHHHHHHHH
Confidence               23566665554444444433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.03  E-value=1.8e-08  Score=97.19  Aligned_cols=160  Identities=9%  Similarity=-0.069  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHh----hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccC
Q 018940           43 WFTYLLLFLTD----IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (348)
Q Consensus        43 ~~~~l~~~~~~----~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~  118 (348)
                      .....+.|+.+    .+.+..+.|.+.++..+...+++++.|+++||+||||.+. .+....++...+...  .      
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-~~~~l~~~~~~l~~~--~------  312 (420)
T PRK09528        242 FDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALL-LAGTIMAVRIIGSGF--A------  312 (420)
T ss_pred             HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhH-HHHHHHHHHHHHHHh--c------
Confidence            33445556554    2677788999999999999999999999999999998754 455555555433321  1      


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCcccc
Q 018940          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (348)
Q Consensus       119 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~-~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~  197 (348)
                       .+.+......    .+.+.+.+.........+++..+ ++.|+...+. .+....+|..+++.+.+.+.+         
T Consensus       313 -~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~---------  377 (420)
T PRK09528        313 -TGPLEVSILK----LLHAFEVPFLLVGVFKYITLNFD-VRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD---------  377 (420)
T ss_pred             -ccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC-ccceeeeeeehHHHHHHHHHHHHHHHHHHHHH---------
Confidence             1223222211    24455555555555566667664 4566655433 344555666665555444432         


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018940          198 LENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (348)
Q Consensus       198 ~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~  227 (348)
                       ..||+..+.+.+++.++..++.++..+++
T Consensus       378 -~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        378 -SIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             -hhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence             35788888888777777776666666653

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.02  E-value=8.7e-09  Score=97.38  Aligned_cols=143  Identities=16%  Similarity=0.053  Sum_probs=90.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcC
Q 018940           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (348)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~  112 (348)
                      +...........++|.|+++. |.++.+.+.+.....+...+..++.|+++||+||||.++..+.............  .
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~  306 (394)
T TIGR00883       229 IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA--L  306 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH--H
Confidence            334444455668889998765 9999999999999999999999999999999999987654333332222111110  0


Q ss_pred             CCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHH-HHHHHHHHHHHHHHHHHHH
Q 018940          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVF  187 (348)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~-~~~~~ig~~~~~~~~~~~~  187 (348)
                      .    ...+.. ...   +...+.+.+.+....+..++++|..| +++|++..+.. +....+|..+++.+.+.+.
T Consensus       307 ~----~~~~~~-~~~---~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~  373 (394)
T TIGR00883       307 L----DSGSFT-LFF---FLVLGLALIGGMYTGPMGSFLPELFP-TEVRYTGASLAYNLAGAIFGGFAPYIAAALV  373 (394)
T ss_pred             h----cCCchH-HHH---HHHHHHHHHHHHHhhhHHHHHHHhCC-ccceeeEeeehhHhHHHHHhhHHHHHHHHHH
Confidence            0    011222 111   11124556666677778889999885 56788877763 3444556656555554444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.01  E-value=3.7e-08  Score=93.77  Aligned_cols=148  Identities=13%  Similarity=0.078  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc
Q 018940           41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (348)
Q Consensus        41 ~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~  120 (348)
                      .....++|.|+++.|.++.+.|.+.+...+...+++.+.|+++||+|||+.+ ..+....+++.....    +       
T Consensus       217 ~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l-~~~~~~~~~~~~~~~----~-------  284 (381)
T PRK03633        217 GSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVL-RVQVFVVILGSIAML----S-------  284 (381)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHH-HHHHHHHHHHHHHHh----h-------
Confidence            3445778888887799999999999999999999999999999999998764 445444444433221    1       


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhh
Q 018940          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (348)
Q Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~  200 (348)
                      ... .....    .+.+.+.....+...+++.|..+ +++++...+..+...++|..+++.+.+.+.+          ..
T Consensus       285 ~~~-~~~~~----~l~g~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~----------~~  348 (381)
T PRK03633        285 QAA-MAPAL----FILGAAGFTLYPVAMAWACEKVE-HHELVAMNQALLLSYTVGSLLGPSFTAMLMQ----------NY  348 (381)
T ss_pred             hHH-HHHHH----HHHHHHHHhHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------Hh
Confidence            011 11111    13343333444555566666653 4555666666666677777777666655543          34


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018940          201 QYRWIAYSSIFIGCCF  216 (348)
Q Consensus       201 g~~~~~~i~~~i~~~~  216 (348)
                      ++++.+.+.+.+.++.
T Consensus       349 g~~~~f~~~~~~~l~~  364 (381)
T PRK03633        349 SDNLLFIMIASVSFIY  364 (381)
T ss_pred             CccHHHHHHHHHHHHH
Confidence            6777777766666544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.00  E-value=2.3e-07  Score=88.94  Aligned_cols=172  Identities=13%  Similarity=-0.017  Sum_probs=115.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhh-C----CChhHHHHHHHHHHHHHHhhhhhhHhhhcc-cCCchHHHHHHHHHHHHH
Q 018940           30 GSGHMLNDITAACWFTYLLLFLTDI-G----LSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVS  103 (348)
Q Consensus        30 ~~g~~~~~~~~~~~~~~l~~~~~~~-g----~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~i~~~~~~~~i~  103 (348)
                      ....+--.+.++-+-..+..|++.. +    +|.+++..+++.+.-..-....+.|+++|| +|+||.. ..|+++++++
T Consensus        27 f~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI-~lGail~~iG  105 (498)
T COG3104          27 FFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI-VLGAILMAIG  105 (498)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHH
Confidence            3445556666665566666666553 5    999999999999988888999999999999 5999985 5799999999


Q ss_pred             HHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcc-cchhHHHHHHHHHHHHHHHHHHH
Q 018940          104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLSLYAI  182 (348)
Q Consensus       104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~R~~~~~~~~~~~~ig~~~~~~~  182 (348)
                      -..+..   +    +..+.....+...    +..+|.+..=.+..+++.+..++.| +|....+..+.+.++|+..++.+
T Consensus       106 h~~L~~---~----~~~~~~gl~i~L~----~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i  174 (498)
T COG3104         106 HLVLAI---S----SVSGPGGLYIGLA----LIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII  174 (498)
T ss_pred             HHHHhc---c----ccccccHHHHHHH----HHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH
Confidence            877653   2    1012222323222    3447777777777788888875433 35667778888889998887666


Q ss_pred             HHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 018940          183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRT  224 (348)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~  224 (348)
                      .+.+.          ...||+..|-+.++- ....++.+...
T Consensus       175 ~~~~~----------~~~g~~~gF~~aavG-m~~gl~~f~~~  205 (498)
T COG3104         175 TGLLA----------INYGWHVGFGLAAVG-MIIGLVIFLLG  205 (498)
T ss_pred             HHHHH----------HhhCHHHHHHHHHHH-HHHHHHHHHHc
Confidence            54332          256788877766543 33333333333

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.00  E-value=5.9e-08  Score=91.51  Aligned_cols=164  Identities=15%  Similarity=0.122  Sum_probs=111.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcC
Q 018940           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (348)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~  112 (348)
                      +......+...+|+.++++|. |.|...+++++.++.+...+++.+.|+++|| +.||... ....+.++.+..+..  .
T Consensus       221 ~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~-~~~~l~a~~~l~l~~--~  296 (394)
T COG2814         221 FLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALI-AALLLLALALLALTF--T  296 (394)
T ss_pred             HHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHH-HHHHHHHHHHHHHHH--h
Confidence            333444456679999999998 9999999999999999999999999999999 7777654 454555555543321  1


Q ss_pred             CCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 018940          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA  192 (348)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~  192 (348)
                      +      .+.+ ......   .+.+...+..........++.  .||+++...++.....|+|..++..+++.+++    
T Consensus       297 ~------~~~~-~~~~~~---~~wg~a~~~~~~~~~~~~a~~--~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~----  360 (394)
T COG2814         297 G------ASPA-LALALL---FLWGFAFSPALQGLQTRLARL--APDAADLAGSLNVAAFNLGIALGAALGGLVLD----  360 (394)
T ss_pred             c------chHH-HHHHHH---HHHHHHhhhhhhHHHHHhccc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            2      1222 211111   134444444444444444442  35788999999999999999999888888774    


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 018940          193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSR  223 (348)
Q Consensus       193 ~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~  223 (348)
                            ..|+....++.+++.++..++....
T Consensus       361 ------~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         361 ------ALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             ------hhchHHHHHHHHHHHHHHHHHHHHH
Confidence                  3567777777777766666555443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.99  E-value=4.4e-08  Score=93.68  Aligned_cols=162  Identities=12%  Similarity=0.038  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHhh-CC-Ch--hHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCc
Q 018940           40 AACWFTYLLLFLTDI-GL-SP--RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (348)
Q Consensus        40 ~~~~~~~l~~~~~~~-g~-s~--~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~  115 (348)
                      .....++++.|..+. +. +.  ...|.+..+..+...+..++.|+++||+||||.+. .+.....+.......   .  
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~~---~--  308 (408)
T PRK09874        235 TGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILI-TALIFSVLLLIPMSF---V--  308 (408)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHH-HHHHHHHHHHHHHHH---h--
Confidence            334456777787775 32 21  23566777778888899999999999999988754 454444444332211   0  


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 018940          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (348)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  195 (348)
                          .+.....+    ...+.+++.+...+...+.+.+.. ++++|++..+..+....+|..+++.+.+.+.        
T Consensus       309 ----~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~--------  371 (408)
T PRK09874        309 ----QTPLQLGI----LRFLLGAADGALLPAVQTLLVYNS-SNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS--------  371 (408)
T ss_pred             ----ccHHHHHH----HHHHHHhhhHhhHHHHHHHHHHhC-CcccceeeehHHHHHHHHHHHhhHHHHHHHH--------
Confidence                12221111    112456666666666666666655 4567888888888888888877766655443        


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018940          196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (348)
Q Consensus       196 ~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e  226 (348)
                        +..||++.+++.+++.++..++.++..++
T Consensus       372 --~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        372 --ANYGFRAVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             --hhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              23578889988888777777666555444

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.98  E-value=1.1e-08  Score=99.03  Aligned_cols=168  Identities=15%  Similarity=-0.019  Sum_probs=104.3

Q ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc--c
Q 018940           44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS--T  121 (348)
Q Consensus        44 ~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~--~  121 (348)
                      ..+.+.++++.|.+..+.+....+..+...++.++.|+++||+|||+.+. .+....+++...+.....+.  ....  .
T Consensus       304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~  380 (481)
T TIGR00879       304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLL-IGAAGMAICLFVLGILGASF--VTGSSKS  380 (481)
T ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHHhhcc--cCCcccc
Confidence            45566666667999888899999999999999999999999999998764 45555555543332000010  0000  0


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHH-HhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhh
Q 018940          122 LKVETISYCVFAAIFNVGWAATQ-VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (348)
Q Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~  200 (348)
                      .....+...   .++..+++... ....++..|..+ +++|++..+..+...++|+.+++.+.+.+..          ..
T Consensus       381 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~----------~~  446 (481)
T TIGR00879       381 SGNVAIVFI---LLFIAFFAMGWGPVPWVIVSEIFP-LSLRPKGISIAVAANWLANFIVGFLFPTMLE----------SI  446 (481)
T ss_pred             hhHHHHHHH---HHHHHHHHccccCeehhhhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hc
Confidence            011111111   12222333222 223455577764 5789999999888888888877665544432          34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018940          201 QYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (348)
Q Consensus       201 g~~~~~~i~~~i~~~~~ll~~~~~~e~~  228 (348)
                      +|++.+.+.++++++..++..+..||++
T Consensus       447 ~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       447 GVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             CccceehhHHHHHHHHHHHHheecccCC
Confidence            6777777777777777777766677743

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.97  E-value=1.2e-08  Score=99.85  Aligned_cols=167  Identities=12%  Similarity=0.018  Sum_probs=105.0

Q ss_pred             HHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchh
Q 018940           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (348)
Q Consensus        45 ~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~  124 (348)
                      .+.|.++++.|.+....+.......+...++.++.|+++||+|||+.+ +.+.+..+++...+..  ..   ........
T Consensus       292 ~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~-i~~~~~~~v~~~~l~~--~~---~~~~~~~~  365 (479)
T PRK10077        292 YYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ-IIGALGMAIGMFSLGT--AF---YTQAPGIV  365 (479)
T ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHhHHHHHHHHHHHHH--HH---hcCcccHH
Confidence            344555566688877777777778888899999999999999998875 4566666666543321  01   00111111


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCcccchhhH
Q 018940          125 ETISYCVFAAIFNVGWAAT-QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS--VSTAKTHADLENQ  201 (348)
Q Consensus       125 ~~~~~~l~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~--~~~~~~~~~~~~g  201 (348)
                      . . ..+  .+++.+++.. .+...++++|..+ +++|++..++.+....+|..+++.+.+.+..  .+.      +..+
T Consensus       366 ~-~-~~~--~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~------~~~~  434 (479)
T PRK10077        366 A-L-LSM--LFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLV------AHFH  434 (479)
T ss_pred             H-H-HHH--HHHHHHHhccccchhHHHhHhhCC-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchh------hhcc
Confidence            1 1 111  1233333322 2335678888874 5789999999988888888887766533321  111      2456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccc
Q 018940          202 YRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (348)
Q Consensus       202 ~~~~~~i~~~i~~~~~ll~~~~~~e~~  228 (348)
                      |++.+++.+++.++..++.++..||++
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~e~~  461 (479)
T PRK10077        435 NGFSYWIYGCMGVLAALFMWKFVPETK  461 (479)
T ss_pred             CccHHHHHHHHHHHHHHHHHhccccCC
Confidence            777777777777777777766777753

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.95  E-value=1.1e-08  Score=99.83  Aligned_cols=162  Identities=12%  Similarity=0.050  Sum_probs=101.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhccc--CCchHHHHH-HHHHHHHHHHHHhc
Q 018940           33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGA-GSVLVAVSFSSVFG  109 (348)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~--Grrr~~i~~-~~~~~~i~~~~l~~  109 (348)
                      .+...........+++.|.++.|.+..+.|.+.++..+...+.+|+.|+++||.  ++||...+. +.....+...... 
T Consensus       250 ~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~-  328 (455)
T TIGR00892       250 NVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA-  328 (455)
T ss_pred             HHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH-
Confidence            333333444456788899888899999999999999999999999999999983  333333221 2222222221111 


Q ss_pred             CcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018940          110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~  189 (348)
                        .      ..+.....+    ...+.+++++....+..+++.+..+ +++|++..++.+....+|+.+++.+.+.+.+.
T Consensus       329 --~------~~~~~~~~i----~~~~~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~  395 (455)
T TIGR00892       329 --L------AGDYTGLVI----YCIFFGLSFGSVGALLFEVLMDLVG-AQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA  395 (455)
T ss_pred             --H------hchHHHHHH----HHHHHHHHhchHHHHHHHHHHHHhh-HHHHhhHHhHHHHHHHHHHHccccceeeeehh
Confidence              0      112222211    1235667777777777788888774 57889999998888888888766554443321


Q ss_pred             ccCCcccchhhHHHHHHHHHHHHHHHHH
Q 018940          190 STAKTHADLENQYRWIAYSSIFIGCCFV  217 (348)
Q Consensus       190 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~  217 (348)
                               ..+|++.+++.+++.++..
T Consensus       396 ---------~g~~~~~f~~~~~~~li~~  414 (455)
T TIGR00892       396 ---------TKNYKYIFYASGSIVVSAG  414 (455)
T ss_pred             ---------cCCcchHHHHhhHHHHHHH
Confidence                     1247777766655544443

>PRK15075 citrate-proton symporter; Provisional

Probab=98.90  E-value=1.6e-07  Score=91.13  Aligned_cols=137  Identities=12%  Similarity=0.019  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccC
Q 018940           40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (348)
Q Consensus        40 ~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~  118 (348)
                      ......++|.|+++. |.+..+.+++..+..+...++.++.|+++||+||||.++................  .+    .
T Consensus       254 ~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--~~----~  327 (434)
T PRK15075        254 FYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW--LV----A  327 (434)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH--HH----c
Confidence            345567889999886 9999999999989999999999999999999999988654322221112111110  01    0


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHH-HHHHHHHHHHHHHHHHH
Q 018940          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVF  187 (348)
Q Consensus       119 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~-~~~ig~~~~~~~~~~~~  187 (348)
                      ..+........    .+.+++++.......++..|..| +++|+...++.+. +..+++.+++.+.+.+.
T Consensus       328 ~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~e~~p-~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~  392 (434)
T PRK15075        328 APSFARMLAVE----LWLSFLYGSYNGAMVVALTEVMP-AEVRTAGFSLAYSLATAIFGGFTPAISTWLI  392 (434)
T ss_pred             CCchHHHHHHH----HHHHHHHHHHHhhHHHHHHHHCC-CCccchheeHHHHHHHHHHhhhHHHHHHHHH
Confidence            11111111111    12334455544445567788875 5689888776433 32233444444433333

>PRK09952 shikimate transporter; Provisional

Probab=98.89  E-value=3.2e-07  Score=89.23  Aligned_cols=170  Identities=12%  Similarity=0.012  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCc
Q 018940           37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (348)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~  115 (348)
                      ........++.+.|.++. |.+......+.....+...++.++.|+++||+||||.++ .+.+..++.....+. ...  
T Consensus       263 ~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~-~~~~~~~~~~~~~~~-~~~--  338 (438)
T PRK09952        263 LLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYI-TGALIGTLSAFPFFM-ALE--  338 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH-HHHHHHHHHHHHHHH-HHH--
Confidence            334445567888888775 998887666666677788889999999999999998754 454444433322211 000  


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCc
Q 018940          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFSVSTAKT  194 (348)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~-~~~ig~~~~~~~~~~~~~~~~~~~  194 (348)
                         ..+..+..+.   ...+.+++.+.......++.+|..+ ++.|+...++.+. +..+|+.+++.+.+.+++..    
T Consensus       339 ---~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~e~~p-~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~----  407 (438)
T PRK09952        339 ---AQSIFWIVFF---SIMLANIAHDMVVCVQQPMFTEMFG-ASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF----  407 (438)
T ss_pred             ---cCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence               1111111111   1123445555556667788899885 4678777776543 33356556555554444321    


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018940          195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (348)
Q Consensus       195 ~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e  226 (348)
                          ..+|+..+...++..++..+.. +.++|
T Consensus       408 ----~~~~~~~~~~~~~~~~i~~v~~-~~~~~  434 (438)
T PRK09952        408 ----GGSWHSVAIYLLAGCLISAMTA-LLMKD  434 (438)
T ss_pred             ----CCCchHHHHHHHHHHHHHHHHH-HHccc
Confidence                1236666665555554444333 44565

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.88  E-value=7.3e-08  Score=94.88  Aligned_cols=132  Identities=11%  Similarity=0.026  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc
Q 018940           43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (348)
Q Consensus        43 ~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~  121 (348)
                      ...++|.|+++. |.++.+.|.+.+...+...++.++.|+++||+||||.++ .+.....+....+..  .+     ..+
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~~--~~-----~~~  365 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYV-CSLLISQLLIIPVFA--IG-----GAN  365 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHhh--cc-----ccH
Confidence            346788999754 999999999999999999999999999999999998765 344443333322221  11     111


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (348)
Q Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~  187 (348)
                      .. ......   .+.+...........+++.+..+ +++|++..++.+....+|+.+++.+.+.+.
T Consensus       366 ~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~  426 (496)
T PRK03893        366 VW-VLGLLL---FFQQMLGQGISGLLPKLIGGYFD-TEQRAAGLGFTYNVGALGGALAPILGALIA  426 (496)
T ss_pred             HH-HHHHHH---HHHHHHhcccchhhHHHHHhhCC-HHHhhcccchhhhhhhHHHHHHHHHHHHHh
Confidence            11 111111   11221111222334456777764 578999999888888888777666554443

>TIGR00896 CynX cyanate transporter

Probab=98.87  E-value=1.8e-07  Score=88.10  Aligned_cols=137  Identities=12%  Similarity=0.094  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCccc
Q 018940           38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (348)
Q Consensus        38 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~  117 (348)
                      ........++|.|+++.|.|+.+.|.+.++..+..+++.++.|+++||+|+||..+..+....+++...+..  .+    
T Consensus       211 ~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~~----  284 (355)
T TIGR00896       211 GLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF--AP----  284 (355)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH--hh----
Confidence            334455678899998889999999999999999999999999999999965555455555555555443321  12    


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (348)
Q Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~  188 (348)
                       ... . . . +.   .+.+++.+.......+.+.+..+++++++...++.+....++..+++.+.+.+.+
T Consensus       285 -~~~-~-~-~-~~---~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~  347 (355)
T TIGR00896       285 -MHG-L-W-A-WA---LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD  347 (355)
T ss_pred             -hhH-H-H-H-HH---HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             111 1 1 1 11   2566666665554445554444445566777777776666666666555555543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.86  E-value=1.3e-07  Score=90.05  Aligned_cols=158  Identities=12%  Similarity=0.158  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc
Q 018940           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (348)
Q Consensus        42 ~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~  120 (348)
                      ....|+++|+++. |.|+.+.+.+.+...+...++.++.|+++||+|+||... .+....+++...+..  .+      .
T Consensus       217 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~-~~~~~~~i~~~~~~~--~~------~  287 (382)
T PRK10091        217 AWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAA-VTDFIIVLALLMLFF--FG------G  287 (382)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHH-HHHHHHHHHHHHHHH--HH------h
Confidence            3356778888775 999999999999999999999999999999999987754 455555555433221  01      1


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhh
Q 018940          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (348)
Q Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~  200 (348)
                      +.....+. .   .+.+.+......+......+..+++++++..  ..+....+|..+++.+.+.+.+.         ..
T Consensus       288 ~~~~~~~~-~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~---------~~  352 (382)
T PRK10091        288 MKTASLIF-A---FICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTL---------GL  352 (382)
T ss_pred             hHHHHHHH-H---HHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHc---------cc
Confidence            11111111 1   1333443333333332222222233334433  22445566777766665555432         23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 018940          201 QYRWIAYSSIFIGCCFVGIFLSR  223 (348)
Q Consensus       201 g~~~~~~i~~~i~~~~~ll~~~~  223 (348)
                      +|++.+.+.+++..+.......+
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        353 AYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHH
Confidence            56666666555544444333333

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.86  E-value=2.3e-06  Score=84.52  Aligned_cols=161  Identities=14%  Similarity=0.083  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHhh-CCChhHHHHHH-HHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCccc
Q 018940           40 AACWFTYLLLFLTDI-GLSPRGAAAVM-LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (348)
Q Consensus        40 ~~~~~~~l~~~~~~~-g~s~~~~g~i~-~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~  117 (348)
                      ......+.++|+.+. |.|+.+.|.+. ....+...++.++.|+++||+||||..++ +.+..++.......  ..  ..
T Consensus       238 ~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i-~~~l~~l~~l~~~~--l~--~~  312 (491)
T PRK11010        238 DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMI-FGILQGVSNAGYWL--LS--IT  312 (491)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHH--HH--hc
Confidence            334456677887665 99999999997 46678999999999999999999887543 33333332211110  01  00


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc
Q 018940          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (348)
Q Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~  197 (348)
                       ..+........    .+.++..+....+..+...++.+ ++.++...++.+....+|..+++.+.+.+.+         
T Consensus       313 -~~~~~~l~~~~----~l~~~~~g~~~~~~~a~~~~l~~-~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~---------  377 (491)
T PRK11010        313 -DKNLYSMGAAV----FFENLCGGMGTAAFVALLMTLCN-KSFSATQFALLSALSAVGRVYVGPVAGWFVE---------  377 (491)
T ss_pred             -cccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence             11211111111    12222333333445566667764 4566777777777777776665544444442         


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH
Q 018940          198 LENQYRWIAYSSIFIGCCFVGIFL  221 (348)
Q Consensus       198 ~~~g~~~~~~i~~~i~~~~~ll~~  221 (348)
                       ..||+..+.+.+++++...++..
T Consensus       378 -~~G~~~~f~~~~~~~l~~l~~~~  400 (491)
T PRK11010        378 -AHGWPTFYLFSVAAAVPGLLLLL  400 (491)
T ss_pred             -HhChHHHHHHHHHHHHHHHHHHH
Confidence             34788777776666665544443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.86  E-value=3e-07  Score=94.37  Aligned_cols=140  Identities=16%  Similarity=-0.017  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHH
Q 018940           62 AAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWA  141 (348)
Q Consensus        62 g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  141 (348)
                      .....+..+...+++++.|+++||+|||+.+ ..+.++.+++..++..  .+       +.....+..    .+.+++.+
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l-~~~~~lsai~~ll~~~--~~-------s~~~ll~~~----~l~g~~~~  663 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRML-AGSMVLSCISCFFLSF--GN-------SESAMIALL----CLFGGLSI  663 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHHHH--Hc-------cHHHHHHHH----HHHHHHHH
Confidence            4456677788899999999999999999875 4566666665543221  11       112121111    23444444


Q ss_pred             HHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 018940          142 ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL  221 (348)
Q Consensus       142 ~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~  221 (348)
                      .......++++|+.| .++|+++.++.+....+|+++++.+.+.+..           .+...++++++++.++.+++..
T Consensus       664 ~~~~~~~a~~aEl~P-t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~-----------~~~~~pf~i~a~~lll~~ll~~  731 (742)
T TIGR01299       664 AAWNALDVLTVELYP-SDKRATAFGFLNALCKAAAVLGILIFGSFVG-----------ITKAAPILFASAALACGGLLAL  731 (742)
T ss_pred             HHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHHHHHH
Confidence            455556788899885 5789999999999999999988776555432           2334566667666666555544


Q ss_pred             hhccccc
Q 018940          222 SRTEEPR  228 (348)
Q Consensus       222 ~~~~e~~  228 (348)
                       +.||.+
T Consensus       732 -~LPET~  737 (742)
T TIGR01299       732 -KLPDTR  737 (742)
T ss_pred             -hCCCCc
Confidence             558754

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.85  E-value=1.5e-07  Score=92.13  Aligned_cols=140  Identities=15%  Similarity=0.086  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCc
Q 018940           37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (348)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~  115 (348)
                      .........++|.|+++. |.++.+.|.+.....+...++.++.|++.||+|||+.+ ..+....+++...+... .   
T Consensus       268 ~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~-~~g~~~~~~~~~~~~~~-~---  342 (485)
T TIGR00711       268 GLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLV-TIGLILYAVGFYWRAFT-F---  342 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHH-HHHHHHHHHHHHHHhcc-C---
Confidence            333344456788899887 99999999999999999999999999999999998774 45666666665443310 1   


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (348)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~  187 (348)
                       .+..+.......    ..+.+++.+....+......+.. ++++|+.+.+..+....+|+.++..+.+.+.
T Consensus       343 -~~~~~~~~~~~~----~~l~g~g~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~  408 (485)
T TIGR00711       343 -TPDTPFLAIALP----QFIRGFGMGCFFMPLTTIALSGL-PPHKIARGSSLSNFTRQLGGSIGTALITTIL  408 (485)
T ss_pred             -CCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC-CHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             111222222111    13566777666666666665555 4678999999998888888888776655554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.84  E-value=4.1e-07  Score=88.22  Aligned_cols=126  Identities=13%  Similarity=0.079  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCc
Q 018940           37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (348)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~  115 (348)
                      .........++|.|+++. |.+..+.+....+..+...+.+++.|+++||+||||..+. +.+..++.....+. ..+  
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~-~~~~~~~~~~~~~~-~~~--  331 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLC-FGSLAALFTVPILS-ALQ--  331 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH-HHHHHHHHHHHHHH-HHH--
Confidence            333445568899999875 9999999999998888899999999999999999987654 33332222211110 001  


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHH
Q 018940          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM  173 (348)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~  173 (348)
                        ...+.... ....   .+.....+.......++.+|..| +|.|+...++.+...+
T Consensus       332 --~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~e~fp-~~~r~t~~g~~~~~g~  382 (432)
T PRK10406        332 --NVSSPYAA-FGLV---MCALLIVSFYTSISGILKAEMFP-AQVRALGVGLSYAVAN  382 (432)
T ss_pred             --cCCcHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHCC-CCccchhhhHHHHHHH
Confidence              01111111 1111   11112222333345567888885 5789999998775433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.84  E-value=1.1e-07  Score=92.28  Aligned_cols=242  Identities=13%  Similarity=0.025  Sum_probs=139.1

Q ss_pred             HHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Q 018940           67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVA  146 (348)
Q Consensus        67 ~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  146 (348)
                      ...+...+.+|..|.++||||||.++. .......+..+.+..          .+ +|.++.     .-...++.+....
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~-~~~~~~~l~~~~~~~----------~~-~~~~~~-----~~l~g~~~~~~s~  132 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLL-LPLFGTILPALCLLF----------QG-YWFFLL-----LGLSGGFSAIFSV  132 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHH-HHHHHHHHhHHHHHH----------HH-HHHhhh-----cccccchhhhhhh
Confidence            447888899999999999999988754 333333333221110          01 111110     0122334455555


Q ss_pred             HhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018940          147 HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (348)
Q Consensus       147 ~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e  226 (348)
                      ..+.+++++. +++|....+..+.-...+..+++.+++-..          ...|.-..+.+.++..++..+...+.+||
T Consensus       133 ~~a~vadis~-~~~R~~~~gll~~~~~~~~~~~p~~~~~~~----------~~~~~a~~f~ia~~~~~~~~~y~~~~l~E  201 (463)
T KOG2816|consen  133 GFAYVADISS-EEERSSSIGLLSGTFGAGLVIGPALGGYLV----------KFLGIALVFLIAAASGILSLLYMLLFLPE  201 (463)
T ss_pred             hhhheeeccc-hhHHHHHHHHHHHHHHHHHhHHHHHHHHHH----------HhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence            6678888875 567887777666544444444333322222          23456666777777888888888888999


Q ss_pred             cccccccc----------C--CchhHHHHHHHHH---hHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhhcccccchhhhH
Q 018940          227 PRLKMGLR----------G--NSHARISWAYWFK---KILYYQVALVYMLTRLVVN-VSQAYLAFYVINDLRMGQSAKAL  290 (348)
Q Consensus       227 ~~~~~~~~----------~--~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~~~~~~~yl~~~~~~~~~~~~~  290 (348)
                      +..+++++          +  .....+.++...+   +|..+.+.+..++....-. ...-..+.|+....+++.++.+.
T Consensus       202 sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~  281 (463)
T KOG2816|consen  202 SLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSD  281 (463)
T ss_pred             ccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHH
Confidence            64432221          0  0111222222222   2333333333333322222 22214466777778898877775


Q ss_pred             HhHHHHHHHHHHHHHHH-HH-HHhhhhhhHHHHHHHHHHHHHHHhHhhcc
Q 018940          291 VPAIIYICSFIVSILLQ-EM-AWTGQRLKAYYSAGGVLWVFCGAGILILP  338 (348)
Q Consensus       291 ~~~~~~~~~i~g~~~~~-~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~~  338 (348)
                      +....+....++.++.. .+ +.+|.|  +.+..|+....+...+..|+.
T Consensus       282 ~~~~~~~~~~i~~l~~~~~l~~~l~~~--~~i~lGl~~~~~~~~~~af~~  329 (463)
T KOG2816|consen  282 LLSLVSILGIISQLLLLPLLSSILGEK--RLISLGLLSEFLQLLLFAFAT  329 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh--hHhhHHHHHHHHHHHHHHHhc
Confidence            55555566667665554 56 788988  799999998888888877774

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.84  E-value=4.1e-07  Score=87.30  Aligned_cols=133  Identities=10%  Similarity=0.016  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc
Q 018940           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (348)
Q Consensus        42 ~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~  120 (348)
                      ....+.|.|+.+. |.++.+.|.......+...++.++.|+++||+||||.. ..+.+..+++...+..  .+.  ....
T Consensus       233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~-~~~~~~~~~g~~~~~~--~~~--~~~~  307 (406)
T PRK15402        233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLI-RMGLWPMVAGLLLAAL--ATV--ISSH  307 (406)
T ss_pred             HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHH--HHH--cccc
Confidence            3345567777775 99999999988878888889999999999999998875 4565555555433221  010  0011


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 018940          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (348)
Q Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~  185 (348)
                      +..+..    +...+.+.+.+....+..+.... . ++++|++..+..+....++..+++.+.+.
T Consensus       308 ~~~~~~----~~~~~~g~g~~~~~~~~~~~~~~-~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~  366 (406)
T PRK15402        308 AYLWLT----AGLSLYAFGIGLANAGLYRLTLF-S-SDVSKGTVSAAMGMLSMLIFTVGIELSKH  366 (406)
T ss_pred             cHHHHH----HHHHHHHHHHHHHhhhHHHHHhh-h-ccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222211    11124555655544444443322 2 34789999998888877777665544433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.84  E-value=1.7e-07  Score=83.61  Aligned_cols=127  Identities=13%  Similarity=0.163  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccc
Q 018940           44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (348)
Q Consensus        44 ~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~  122 (348)
                      .+.-+.++++- |+|+..+|.+.+.-....++.+|++|.++||.||+-.|+..+++....+=..+++   .    .-+++
T Consensus       284 i~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F---t----~lsPy  356 (459)
T KOG4686|consen  284 ITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF---T----FLSPY  356 (459)
T ss_pred             hhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh---h----hccHH
Confidence            34456788875 9999999999999999999999999999999999877776655555554333332   1    01122


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (348)
Q Consensus       123 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~  186 (348)
                      . .   .    .+.|+.++....+.+.+++.+.| +++-+.+.++.+..+++|-.+.+++.+.+
T Consensus       357 ~-~---m----~~lGLsysllAcslWP~va~~vp-E~qLGTaygf~qsIqNLgla~i~Iiag~i  411 (459)
T KOG4686|consen  357 T-S---M----TFLGLSYSLLACSLWPCVASLVP-EEQLGTAYGFIQSIQNLGLAFIPIIAGFI  411 (459)
T ss_pred             H-H---H----HHHhhhHHHHHHHHhhhhhhhCC-HHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence            1 1   1    25677777777777888888774 67789999999999999988766655443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.82  E-value=4.4e-07  Score=86.60  Aligned_cols=165  Identities=15%  Similarity=0.040  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHH-HHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCC
Q 018940           35 LNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP  113 (348)
Q Consensus        35 ~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i-~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~  113 (348)
                      ..........++.++|++|.|.|+.++|.+..+... ...++..+.|++.||+|+||... .+....++.....+.  ..
T Consensus       219 l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~-~~~~~~~~~~~~~~~--~~  295 (390)
T TIGR02718       219 LSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFI-LGVGLAGSLALLWFA--QA  295 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHH--HH
Confidence            334444455678889998889999999999888775 44556889999999999988754 344333222211110  00


Q ss_pred             CcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 018940          114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK  193 (348)
Q Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~  193 (348)
                      .. ....+.. .  .+.. ..+.++..+....+..+...+..+++++|++..+..+...++|..+++.+.+.+.+     
T Consensus       296 ~~-~~~~~~~-~--~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~-----  365 (390)
T TIGR02718       296 AF-WLAPGIA-V--AWSC-SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD-----  365 (390)
T ss_pred             Hc-ccCCcHH-H--HHHH-HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            00 0001111 1  1111 01223344555455555555555444678898898888888888887777666553     


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHH
Q 018940          194 THADLENQYRWIAYSSIFIGCCFV  217 (348)
Q Consensus       194 ~~~~~~~g~~~~~~i~~~i~~~~~  217 (348)
                           ..|++..+.+.+++.++..
T Consensus       366 -----~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       366 -----RFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             -----HHccHHHHHHHHHHHHHHH
Confidence                 3466667766655555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.82  E-value=1.6e-07  Score=90.77  Aligned_cols=144  Identities=12%  Similarity=0.132  Sum_probs=92.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCc
Q 018940           33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (348)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~  111 (348)
                      .+...........+.+.|.++. + ++.+.+.+..+..+...++.+++|+++||+||||.+. .+....+++......  
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~-~~~~~~~~~~~~~~~--  306 (437)
T TIGR00792       231 YLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFA-GGILLMVLGYLIFFF--  306 (437)
T ss_pred             HHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH-HHHHHHHHHHHHHHH--
Confidence            3333333333333444444444 5 5667788888889999999999999999999998764 566565555543321  


Q ss_pred             CCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccc------CcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 018940          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITL------NSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (348)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~------~~~~R~~~~~~~~~~~~ig~~~~~~~~~~  185 (348)
                      .+      .+....    .+...+.+++.+.......++++|..+      ++++++...+..+....+|..+++.+.+.
T Consensus       307 ~~------~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~  376 (437)
T TIGR00792       307 AG------SNLPLI----LVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGL  376 (437)
T ss_pred             cc------hhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11      122211    111235566777667777778877653      13345788888888889999888888777


Q ss_pred             HHHhc
Q 018940          186 VFSVS  190 (348)
Q Consensus       186 ~~~~~  190 (348)
                      +++..
T Consensus       377 ll~~~  381 (437)
T TIGR00792       377 ILGII  381 (437)
T ss_pred             HHHHc
Confidence            77654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.82  E-value=1.3e-07  Score=88.70  Aligned_cols=168  Identities=12%  Similarity=0.039  Sum_probs=103.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcc-c-CCchHHHHHHHHHHHHHHHH
Q 018940           30 GSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-F-GHFKIWHGAGSVLVAVSFSS  106 (348)
Q Consensus        30 ~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr-~-Grrr~~i~~~~~~~~i~~~~  106 (348)
                      ++.++..-+.-+.+.-+.|.|++|. |.|..++++..+.+-+....+..++|++||| + |||.|.-+...+...++...
T Consensus       258 a~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~  337 (448)
T COG2271         258 ALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVL  337 (448)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence            3445555555566678899999998 9999999999999999999999999999998 3 89999877666666666654


Q ss_pred             HhcCcCCCcccCcccchhHHHHHHHHHHHHH-HHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHH-HHHHHHHHHH
Q 018940          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFN-VGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLYAIAF  184 (348)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~i-g~~~~~~~~~  184 (348)
                      .+.  .|     ..+.....+..    ...| .-|+-... ......|..| ++--+.+.++...+..+ |...++    
T Consensus       338 ~w~--~~-----~~~~~l~~~~l----~~iGf~IyGPqmL-iGl~a~e~~p-K~AaGtA~Gf~Glf~Yl~Ga~~a~----  400 (448)
T COG2271         338 YWL--AP-----NGSYLLDAILL----FIIGFLIYGPQML-IGLAAAEFVP-KKAAGTATGFVGLFAYLIGAALAG----  400 (448)
T ss_pred             HHc--CC-----CccHHHHHHHH----HHHHHHHhhHHHH-HHHHHhcccc-HhhccchhchhhhHHHHhhHHhcC----
Confidence            443  23     22222221111    1222 12232211 2233445553 44457788888777776 444332    


Q ss_pred             HHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 018940          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF  220 (348)
Q Consensus       185 ~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~  220 (348)
                      ..++...     | ..||...|++..+.++++.++.
T Consensus       401 ~~~g~i~-----d-~~gW~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         401 LPLGYIA-----D-TWGWDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             CcceeeE-----e-cCCCcchHHHHHHHHHHHHHHH
Confidence            2223222     2 3688887776655444444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.80  E-value=7.1e-07  Score=85.06  Aligned_cols=146  Identities=11%  Similarity=0.105  Sum_probs=101.0

Q ss_pred             hHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHH
Q 018940           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (348)
Q Consensus        27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~  106 (348)
                      ..+....+..........++.++|++|.|.|+.++|.+..+..+...+..++.|++.||+|+|+.+ ..+.+...+....
T Consensus       208 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l-~~~~~~~~~~~~~  286 (382)
T TIGR00902       208 LRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLL-LISAIACVGRWAI  286 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHH-HHHHHHHHHHHHH
Confidence            444455555566666777899999988899999999999999999999999999999999998764 4666666666543


Q ss_pred             HhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHH-HHHHHHHHHHHHHHHH
Q 018940          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIAFI  185 (348)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~-~~~~ig~~~~~~~~~~  185 (348)
                      ...   +      .+.+....    ...+.++.++...++...++.+.  ++++|++..+..+ ....+|..+++.+++.
T Consensus       287 ~~~---~------~~~~~~~~----~q~l~g~~~~~~~~~~~~~i~~~--~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~  351 (382)
T TIGR00902       287 IGA---I------EAFPLIFL----LQILHCGTFAVCHLAAMRYIAAQ--PGSEIAKLQALYNALAMGGLIAIFTAFAGF  351 (382)
T ss_pred             HHh---H------hhHHHHHH----HHHHHHHHHHHHHHHHHHHHHhC--CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211   1      12221211    12356677777777777777764  3567788788765 3455677777766666


Q ss_pred             HHH
Q 018940          186 VFS  188 (348)
Q Consensus       186 ~~~  188 (348)
                      +.+
T Consensus       352 l~~  354 (382)
T TIGR00902       352 IYP  354 (382)
T ss_pred             HHH
Confidence            654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.79  E-value=3.4e-07  Score=88.98  Aligned_cols=168  Identities=9%  Similarity=-0.028  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHH--HHHhcCcCCC
Q 018940           38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF--SSVFGGCMPC  114 (348)
Q Consensus        38 ~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~--~~l~~~~~~~  114 (348)
                      ........++|.|+++. |.|+.+.|+...+..+...++.++.|+++||+|++|... .+.....+..  ...+. ..+ 
T Consensus       265 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~-  341 (438)
T TIGR00712       265 LLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA-TGVFFMTLVTIAVIVYW-MNP-  341 (438)
T ss_pred             HHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH-HHHHHHHHHHHHHHHHH-hcC-
Confidence            33345567899999987 999999999999999999999999999999997543222 2222221111  11111 011 


Q ss_pred             cccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhccCC
Q 018940          115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN-LSLYAIAFIVFSVSTAK  193 (348)
Q Consensus       115 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~-~~~~~~~~~~~~~~~~~  193 (348)
                          ..+....  ...+  ...+.+.............+..+ +++|+...++.+.....|+ .+++.+.+.+.+     
T Consensus       342 ----~~~~~~~--~~~~--~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~-----  407 (438)
T TIGR00712       342 ----AGNPLVD--MICM--IVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD-----  407 (438)
T ss_pred             ----CCchHHH--HHHH--HHHHHHHccHHHHHHHHHHHhcC-hhheeeehhhhchHHHhhhhhhcchhHHHHHH-----
Confidence                1121211  1111  12222211111111234556664 5789999888876666654 445555444442     


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018940          194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (348)
Q Consensus       194 ~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~  227 (348)
                           ..||.+.+++.+.+.++..+...+..||+
T Consensus       408 -----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       408 -----FFGWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             -----hccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                 34677777777666666677777777773

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.79  E-value=4.7e-07  Score=84.64  Aligned_cols=130  Identities=10%  Similarity=0.052  Sum_probs=93.7

Q ss_pred             HHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccch
Q 018940           45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (348)
Q Consensus        45 ~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~  123 (348)
                      .+.|.|.++. |.++.+.|.+.....+...++.++.|++.||+|||+... .+....++....+..  .+     . +.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~-----~-~~~  302 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMT-GAIFVIGLAILVVGL--TP-----P-NFP  302 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH-HHHHHHHHHHHHHHh--hc-----h-hHH
Confidence            6677787775 999999999999999999999999999999999987654 444444444433221  11     1 122


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (348)
Q Consensus       124 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~  188 (348)
                      ..    .+...+.+++.+...+...+++.+..+ +|+|++..+..+....++..+++.+.+.+.+
T Consensus       303 ~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       303 LF----LVLWFAIGVGYGPINVPQGTLLQRRVP-AELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11    112235667777777777888888874 6789999999999988888887776665553

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.79  E-value=3.7e-07  Score=88.04  Aligned_cols=130  Identities=15%  Similarity=0.120  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccc
Q 018940           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (348)
Q Consensus        43 ~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~  122 (348)
                      +..++|.|+++.|.++.+.+.+.++..+...+++++.|+++||+||||.+. .+.+..++....+..  .+     ....
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~~~~~--~~-----~~~~  321 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFS-IGLLMSFLFIFPLFR--IP-----QDNY  321 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHH--Hc-----cccH
Confidence            456788888888999999999999999999999999999999999988754 454444444332221  11     1111


Q ss_pred             hhHHHHHHHHHHHHHHHHH--HHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          123 KVETISYCVFAAIFNVGWA--ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (348)
Q Consensus       123 ~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~  187 (348)
                      . . ....    +++.+..  .........+.|..+ +++|++..++.+....+|+.+++.+.+.+.
T Consensus       322 ~-~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~  381 (426)
T PRK12307        322 L-L-LGAC----LFGLMATNVGVGGLVPKFLYDYFP-LEVRGLGTGLIYNLAATSGTFNSMAATWLG  381 (426)
T ss_pred             H-H-HHHH----HHHHHHhcccHhHHHHHHHHHhCc-HHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence            1 1 1111    1222111  111223355677774 578999999887777777777666554443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.78  E-value=3.3e-07  Score=90.56  Aligned_cols=134  Identities=19%  Similarity=0.156  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc
Q 018940           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (348)
Q Consensus        42 ~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~  120 (348)
                      ....++|.|+++. |.|+.+.|..+....+...++.++.|+++||+|||+. +..+....+++...+..  ..    ...
T Consensus       277 ~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-~~~g~~~~~~~~~~l~~--~~----~~~  349 (495)
T PRK14995        277 GFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLV-ATGGMALSALSFYGLAM--TD----FST  349 (495)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHHHHHH--hc----CCC
Confidence            3446778899987 9999999999999999999999999999999999765 45666666665543321  11    112


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (348)
Q Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~  187 (348)
                      +.... ...   ..+.+++.+....+....+.+.. ++++++..++..+...++|+.++..+.+.+.
T Consensus       350 ~~~~~-~~~---~~l~G~g~g~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        350 QQWQA-WGL---MALLGFSAASALLASTSAIMAAA-PPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             chHHH-HHH---HHHHHHhHHHHHHHHHHHHHhcC-CHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22212 111   23567777777776766666655 4678899999888888888887666554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.78  E-value=2.9e-07  Score=90.48  Aligned_cols=157  Identities=17%  Similarity=0.011  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCc-----hHHHHHHH-HHHHHHHHHHhcCcCCC
Q 018940           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHF-----KIWHGAGS-VLVAVSFSSVFGGCMPC  114 (348)
Q Consensus        42 ~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grr-----r~~i~~~~-~~~~i~~~~l~~~~~~~  114 (348)
                      ....++|.|+.+. |.+..+.+.+.++..+...++.++.|+++||+|||     |.++.... .+..+... .+    +.
T Consensus       270 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~-~~----~~  344 (476)
T PLN00028        270 TMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCI-WL----GR  344 (476)
T ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHH-Hh----cc
Confidence            3456778888776 99999999999999999999999999999999865     22222221 11111111 11    10


Q ss_pred             cccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 018940          115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT  194 (348)
Q Consensus       115 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~  194 (348)
                          ..+.... ....   .+++.+.........++.+++.  +++|+...++.+.+..+|+.+++.    +.+. .   
T Consensus       345 ----~~~~~~~-~~~~---~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~g~lg~~i~~~----l~~~-~---  406 (476)
T PLN00028        345 ----ANSLGAA-IVVM---ILFSIFVQAACGATFGIVPFVS--RRSLGVISGLTGAGGNVGAVLTQL----LFFT-G---  406 (476)
T ss_pred             ----cchHHHH-HHHH---HHHHHHHHHhhhhhcccCcccC--hhhchhhhhhhhccccHHHHHHHH----HHHh-c---
Confidence                1122211 1111   1233333333333445566553  467888888876665555555432    2221 1   


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018940          195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTE  225 (348)
Q Consensus       195 ~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~  225 (348)
                         ...+|+..+++.+++.++..++. ++++
T Consensus       407 ---~~~~y~~~f~~~~~~~~i~~~~~-~~~~  433 (476)
T PLN00028        407 ---SSYSTETGISLMGVMIIACTLPV-AFIH  433 (476)
T ss_pred             ---CCccHhhHHHHHHHHHHHHHHHH-Hhee
Confidence               12358888887776666655444 3443

>PRK09848 glucuronide transporter; Provisional

Probab=98.74  E-value=1.1e-06  Score=85.47  Aligned_cols=150  Identities=13%  Similarity=0.076  Sum_probs=96.5

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHH
Q 018940           29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (348)
Q Consensus        29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l  107 (348)
                      +.+..+.............+.|+++. |.++...+.......+...++.|+.++++||+|+||.+. .+.+..+++...+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~-~g~~~~~i~~~~~  311 (448)
T PRK09848        233 LCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFL-IGALLGTCGYLLF  311 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH-HHHHHHHHHHHHH
Confidence            33444444444444445556666776 887766666555556778889999999999999988864 5666666665443


Q ss_pred             hcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcc------cchhHHHHHHHHHHHHHHHHHH
Q 018940          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST------SRVVLTSCRNAFTMVANLSLYA  181 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~R~~~~~~~~~~~~ig~~~~~~  181 (348)
                      ..  .|     ..+.+..    .+...+.++|.+....+..++.+|..+..|      +++...+..+....+|..++..
T Consensus       312 ~~--~~-----~~~~~~~----~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~  380 (448)
T PRK09848        312 FW--VS-----VWSLPVA----LVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGS  380 (448)
T ss_pred             HH--cC-----chhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHH
Confidence            32  12     1222211    111235677777777788888888764221      2367788888888889888887


Q ss_pred             HHHHHHHhc
Q 018940          182 IAFIVFSVS  190 (348)
Q Consensus       182 ~~~~~~~~~  190 (348)
                      +.+.+++..
T Consensus       381 i~g~~l~~~  389 (448)
T PRK09848        381 IPAFILGLS  389 (448)
T ss_pred             HHHHHHHHc
Confidence            777766543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.74  E-value=4.7e-07  Score=84.98  Aligned_cols=165  Identities=15%  Similarity=0.045  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc
Q 018940           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (348)
Q Consensus        42 ~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~  120 (348)
                      .+..++|.|+++. |+++.++|.+.+...+...+.-|..|+++||+|.+|..+ .....+++....+..+ .+ ......
T Consensus       236 gfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~-~~f~~~~~~~~~l~~~-~~-~~~~~~  312 (417)
T COG2223         236 GFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTL-AVFVGMALAAALLSLF-LT-GFGHGG  312 (417)
T ss_pred             HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHH-HHHHHHHHHHHHHHcc-cc-ccccCc
Confidence            4468899999887 999999999999999999999999999999999888754 4555555555443321 11 000001


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhh
Q 018940          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (348)
Q Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~  200 (348)
                      +.......+.    ...+..+..+.....+++.+.+  +|-+.+.++....+.+|+...+...+...+.         .-
T Consensus       313 ~~~~~~~~~l----~l~~~~G~GnGsvfk~Ip~if~--~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~---------tg  377 (417)
T COG2223         313 SFVVFVAVFL----ALFVFAGLGNGSVFKMIPVIFP--KETGAVTGIVGAIGGLGGFFLPLAFGVSLDL---------TG  377 (417)
T ss_pred             chHHHHHHHH----HHHHHhccCcchheeechHHHH--hhhhHHHHHHHHhccccccchhHHHHHHHHh---------cc
Confidence            1221222222    2233333444445677777653  4566666666555555543322221111111         11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Q 018940          201 QYRWIAYSSIFIGCCFVGIFLSRT  224 (348)
Q Consensus       201 g~~~~~~i~~~i~~~~~ll~~~~~  224 (348)
                      .++..|.++..+.+++.++.+...
T Consensus       378 ~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         378 SYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566666566666665555443

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.73  E-value=5.6e-08  Score=70.48  Aligned_cols=58  Identities=26%  Similarity=0.430  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHH
Q 018940           38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGA   95 (348)
Q Consensus        38 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~   95 (348)
                      ...+...+|++.|+++.|+|+.++|.+.++..+...+++|++|.++||+||+|..+..
T Consensus        14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~   71 (77)
T PF12832_consen   14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG   71 (77)
T ss_pred             HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence            3344667999999999999999999999999999999999999999999999986543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.73  E-value=5.4e-07  Score=85.67  Aligned_cols=133  Identities=14%  Similarity=0.057  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc
Q 018940           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (348)
Q Consensus        42 ~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~  120 (348)
                      ....++|.|+++. |.+..+.+.+.+...+...++.++.|+++||+||||.+. .+.....+.....+.  .+      .
T Consensus       256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~~--~~------~  326 (405)
T TIGR00891       256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYV-CSLLAGQLLIIPVFA--IG------A  326 (405)
T ss_pred             hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhH-HHHHHHHHHHHHHHH--hC------C
Confidence            3346678888775 999999999999999999999999999999999998754 344433222222221  11      1


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (348)
Q Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~  188 (348)
                      +.....+..    .+.+...........++++|..+ +++|++..+..+....+|..+++.+.+.+.+
T Consensus       327 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       327 NVAVLGLGL----FFQQMLVQGIWGILPKHLGEYFP-TDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             chHHHHHHH----HHHHHHHccchhhHHHHHhhhCC-cchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            222111111    12333333333445567778774 6789999999888888888887766655553

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.73  E-value=6.4e-07  Score=87.63  Aligned_cols=177  Identities=12%  Similarity=0.023  Sum_probs=97.1

Q ss_pred             hHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHH-------HHHHHH
Q 018940           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIW-------HGAGSV   98 (348)
Q Consensus        27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~-------i~~~~~   98 (348)
                      ....+..+...........++|.|+++. |.+..+.|.+.++..+...++.++.|+++||+++||..       +..+..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  343 (465)
T TIGR00894       264 WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIG  343 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            4444555565666666678999999886 99999999999999999999999999999987644221       111111


Q ss_pred             HHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHH
Q 018940           99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS  178 (348)
Q Consensus        99 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~  178 (348)
                      ..........   .+.  . ..+........    .+.+.+.+...........+..  ++.++...++.+..+.+|+.+
T Consensus       344 ~~~~~~~~~~---~~~--~-~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~l~~~i  411 (465)
T TIGR00894       344 GLGPGIFAYA---LPY--L-SAAFYLTIIIL----TLANAVSSGPLAGVLINSLDLA--PRFLGFIKGITGLPGFIGGLI  411 (465)
T ss_pred             HHHHHHHHHH---HHH--c-CCchHHHHHHH----HHHHHHhhhhhhhhhhchhhcC--hhHHHHHHHHHHHHHHHHHHH
Confidence            1111111111   010  0 11111111111    1222222322333333444444  345677777777666666655


Q ss_pred             HHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 018940          179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS  222 (348)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~  222 (348)
                      ++    .+.+.+...   +...+|+..+.+.+++.++..++...
T Consensus       412 ~p----~l~g~~~~~---~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       412 AS----TLAGNILSQ---DSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HH----HhhheeeCC---CCchHHHHHHHHHHHHHHHHHHHeee
Confidence            44    333332210   11245888888887766666555443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.72  E-value=9.8e-07  Score=81.43  Aligned_cols=167  Identities=14%  Similarity=0.086  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCc
Q 018940           36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (348)
Q Consensus        36 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~  115 (348)
                      .+...+.+..++|.++.|.|+|+.+.|.+.+...+..+......-.+++|...+|++.......+.++...+..  .|  
T Consensus       220 qS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~--~P--  295 (395)
T COG2807         220 QSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL--AP--  295 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH--hh--
Confidence            45566677899999999999999999999999999999999999999999877788776666666666654321  24  


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 018940          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (348)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  195 (348)
                         ....    +.+.   .++|.|.+....-....+.+-++++++-++++++.+.   +|++++.. ++++++.+.    
T Consensus       296 ---~~~~----~lw~---~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg---~GYllAa~-GP~l~G~lh----  357 (395)
T COG2807         296 ---GQLP----ILWA---LLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQG---VGYLLAAF-GPWLFGFLH----  357 (395)
T ss_pred             ---hhHH----HHHH---HHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhh---hhHHHHhh-hhhhHhHHH----
Confidence               1221    1122   2566666555555556777767666666777776554   45555432 344555543    


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018940          196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTE  225 (348)
Q Consensus       196 ~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~  225 (348)
                       |...+|+...+..+...++..+..+..-|
T Consensus       358 -Da~gsw~~~~~~l~~~~i~m~i~Gl~a~r  386 (395)
T COG2807         358 -DATGSWSAPLVLLALATLLMLIFGLRAGR  386 (395)
T ss_pred             -HhcCChHHHHHHHHHHHHHHHHHHhhcch
Confidence             33456887777666666555555544433

>TIGR00895 2A0115 benzoate transport

Probab=98.71  E-value=6.3e-07  Score=84.83  Aligned_cols=132  Identities=15%  Similarity=0.016  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcc
Q 018940           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (348)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~  116 (348)
                      .........++|.+.++.|.++.+.+.+.++..+...++.++.|+++||+||| +..... ....+....+..   .   
T Consensus       263 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~-~~~~~~~~~~~~---~---  334 (398)
T TIGR00895       263 LVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR-VTALLL-LLGAVFAVLVGS---T---  334 (398)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH-HHHHHH-HHHHHHHHHHHH---H---
Confidence            33344455677755555699999999999999999999999999999999988 433333 333333222221   0   


Q ss_pred             cCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Q 018940          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (348)
Q Consensus       117 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~  183 (348)
                        ..+......    ...+.+++.+.......+++.+..+ +++|++..++.+....+|..+++.+.
T Consensus       335 --~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~g~~~~  394 (398)
T TIGR00895       335 --LFSPTLLLL----LGAIAGFFVNGGQSGLYALMALFYP-TAIRATGVGWAIGIGRLGAIIGPILA  394 (398)
T ss_pred             --hhCHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence              012221111    1135667777777777888888874 67899999988888777777655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.69  E-value=4.1e-07  Score=87.74  Aligned_cols=158  Identities=11%  Similarity=0.005  Sum_probs=91.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhh--CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHh
Q 018940           31 SGHMLNDITAACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF  108 (348)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~~~~~~--g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~  108 (348)
                      ...+........+.+++|.|+++.  |.|..+.+.+.....+...++.++.|+++||+||||..+....+...++..+..
T Consensus       249 ~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~  328 (412)
T TIGR02332       249 LAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLAS  328 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHH
Confidence            333444444556678999999884  778899999999999999999999999999999887644434334333332221


Q ss_pred             cCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~  188 (348)
                          +     ..+......  .+  .+...+.............+.. ++++|+++.++.+....+|+.+++.+.+.+.+
T Consensus       329 ----~-----~~~~~~~~~--~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~  394 (412)
T TIGR02332       329 ----A-----TDHNLIQLL--GI--IMASMGSFSAMAIFWTTPDQSI-SLQARAIAIAVINATGNIGSALSPFLIGILKD  394 (412)
T ss_pred             ----h-----cCCHHHHHH--HH--HHHHHHhhhhhhHHHhhccccc-chHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence                1     011111111  11  0111222111111222223333 46789999999998888888776554433332


Q ss_pred             hccCCcccchhhHHHHHHHHHHH
Q 018940          189 VSTAKTHADLENQYRWIAYSSIF  211 (348)
Q Consensus       189 ~~~~~~~~~~~~g~~~~~~i~~~  211 (348)
                      .         ..+|++.+.++++
T Consensus       395 ~---------~g~~~~~~~~~~~  408 (412)
T TIGR02332       395 A---------TGSFNSGLWFVAA  408 (412)
T ss_pred             c---------CCCCchhHHHHHH
Confidence            1         1247766655443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.69  E-value=4.2e-06  Score=80.37  Aligned_cols=190  Identities=13%  Similarity=0.125  Sum_probs=131.6

Q ss_pred             hHhhHHhhhhhHHHHHHHHHHHHHHHHHHhhC-CChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHH
Q 018940           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIG-LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV  102 (348)
Q Consensus        24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g-~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i  102 (348)
                      ++...+-+..+...........|.+.|++|.| .+....|.+++++.+..+..=...+++..|+|.|+.++ .+.+..++
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~-~a~~~~~v  285 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLL-LALVAYAV  285 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHH
Confidence            34566777777888888888999999999995 88889999999999999999999999999999987754 45544444


Q ss_pred             HHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHH-HHHHHHHHHHH
Q 018940          103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYA  181 (348)
Q Consensus       103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~-~~~ig~~~~~~  181 (348)
                      =. .++. ..+      .+.......-.+.-.+.|+.++....+...++.+.+| ++.|++..++.+. ...+|..+++.
T Consensus       286 R~-~l~a-~~~------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p-~~~~at~Q~l~~~~~~Glg~~iG~~  356 (400)
T PF03825_consen  286 RW-LLYA-YFS------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAP-PELRATAQGLYSALSFGLGGAIGSL  356 (400)
T ss_pred             HH-HHHH-Hhc------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHhhHHHHHHHH
Confidence            33 2321 010      1211111111110124667777777777788888874 6788999998766 35678888888


Q ss_pred             HHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018940          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (348)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~  227 (348)
                      +++.+.+.++.    +....|...+.+.+++.++..++.++..||+
T Consensus       357 igG~l~~~~g~----~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  357 IGGWLYDAFGA----RGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHhcc----hhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            88888876653    1233455566667777777777777777764

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.68  E-value=3.1e-06  Score=80.64  Aligned_cols=139  Identities=12%  Similarity=0.122  Sum_probs=89.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcC
Q 018940           33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (348)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~  112 (348)
                      .+...........++++|.+|.|.++.+.|.+.++..+...+..++.|++.||+|+|+.+ ..+.+..++....+..   
T Consensus       214 ~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l-~~~~~~~~~~~~~~~~---  289 (382)
T PRK11128        214 VSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLL-LLSAICGVVRWGLMGS---  289 (382)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHh---
Confidence            333344444556788888887899999999999999999999999999999999998874 4566666665433321   


Q ss_pred             CCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHH-HHHHHHHHHHHHHHHHHH
Q 018940          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIAFIVF  187 (348)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~-~~~~ig~~~~~~~~~~~~  187 (348)
                      .      .+.+ ..+   +...+.+++++....+...+..+.  +++++++..+..+ ....+|..+++.+++.+.
T Consensus       290 ~------~~~~-~~~---~~~~l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~  353 (382)
T PRK11128        290 T------TALP-WLI---VIQILHCGTFTVCHLAAMRYIAAR--PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY  353 (382)
T ss_pred             h------hhHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHC--CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1      1222 211   122356666666666666666654  3455677777654 333445555555555544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.68  E-value=4.4e-06  Score=81.93  Aligned_cols=157  Identities=14%  Similarity=0.125  Sum_probs=104.7

Q ss_pred             HhhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCc--hHHHHHHHHHH-
Q 018940           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHF--KIWHGAGSVLV-  100 (348)
Q Consensus        25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grr--r~~i~~~~~~~-  100 (348)
                      +...|-+..+...-....+..+...|.++. |+|..+...+..+..+..+++..++|++.||+|.|  |.++ ...... 
T Consensus       282 ~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~-~~l~~~~  360 (477)
T PF11700_consen  282 QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLL-ISLILWI  360 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH-HHHHHHH
Confidence            345555554444444445567777888876 99999999999999999999999999999999988  6543 333333 


Q ss_pred             HHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHH
Q 018940          101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (348)
Q Consensus       101 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~  180 (348)
                      .+..+.++ +..+.... ..+ .+.+..   ...+.|+..+..+....++.+++.| +++.+...++....+..++.+++
T Consensus       361 ~i~~~g~~-G~~~~~~g-~~~-~~~f~~---~a~~~G~~~G~~qs~sRs~~~~LiP-~g~e~efFgly~i~gk~ss~lGP  433 (477)
T PF11700_consen  361 IIPLYGLF-GFWPSFFG-LKS-PWEFWV---LAVLIGLFMGGIQSASRSLFSRLIP-PGREAEFFGLYAITGKASSWLGP  433 (477)
T ss_pred             HHHHHHHH-HhhhcccC-ccc-HHHHHH---HHHHHHHHhhhHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHHHH
Confidence            22222222 00110000 112 223222   2246778888888889999999996 45668889999888888888877


Q ss_pred             HHHHHHHHh
Q 018940          181 AIAFIVFSV  189 (348)
Q Consensus       181 ~~~~~~~~~  189 (348)
                      .+.+.+.+.
T Consensus       434 ll~g~i~~~  442 (477)
T PF11700_consen  434 LLFGLITDA  442 (477)
T ss_pred             HHHHHHHHH
Confidence            766665544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.66  E-value=4.1e-05  Score=77.82  Aligned_cols=171  Identities=13%  Similarity=0.063  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcc-cCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc
Q 018940           44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (348)
Q Consensus        44 ~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~  121 (348)
                      ...+..|+++. |.+...+..+........-+...+.|.++|+ +||+|.. +.+.++..++..++..+..|    ....
T Consensus         7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tI-l~~~ii~~lG~~llai~a~~----~~~~   81 (654)
T TIGR00926         7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTI-LYLSIVYVVGHALLSFGAIP----SSGH   81 (654)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHhccCc----cccc
Confidence            34556677665 9999999999999999999999999999996 6998875 46777777776554321111    0011


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchh
Q 018940          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST--SRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE  199 (348)
Q Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~  199 (348)
                      .......+ +...+..+|.+..-.+..+...+..++++  +|.+...+.+...++|+.++..+.+.+-...+..   +..
T Consensus        82 ~~~~~~~l-~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~f---g~~  157 (654)
T TIGR00926        82 PLHDLLDL-LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCF---GCQ  157 (654)
T ss_pred             chHHHHHH-HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---ccC
Confidence            11111111 11134556777777778888888764322  2456677777788888777665543322111100   013


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh
Q 018940          200 NQYRWIAYSSIFIGCCFVGIFLSR  223 (348)
Q Consensus       200 ~g~~~~~~i~~~i~~~~~ll~~~~  223 (348)
                      .+|...|.+.++..++..++....
T Consensus       158 ~~~~~aF~i~~i~m~ia~lvf~~g  181 (654)
T TIGR00926       158 DCYPLAFGVPAILMILALIVFMAG  181 (654)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHh
Confidence            468888888877777666655443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.65  E-value=1.2e-06  Score=84.84  Aligned_cols=151  Identities=19%  Similarity=0.175  Sum_probs=104.8

Q ss_pred             hHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHH
Q 018940           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (348)
Q Consensus        27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~  105 (348)
                      ....+..+.......+..++.++|.++. |.+ ...+.+..+..+...+..|++++++||+||||.+. .+....++...
T Consensus       228 ~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~-~~~~~~~~~~~  305 (428)
T PF13347_consen  228 RILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYI-IGLLLAALGFL  305 (428)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehh-hhHHHHHHHHH
Confidence            3444555555666666677777888886 666 56788888899999999999999999999999865 56666666655


Q ss_pred             HHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcc------cchhHHHHHHHHHHHHHHHH
Q 018940          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST------SRVVLTSCRNAFTMVANLSL  179 (348)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~R~~~~~~~~~~~~ig~~~~  179 (348)
                      .++.  .+     ..+.+...    +...+.+++.+.......++.+|..+.+|      +.+...+..+....++..++
T Consensus       306 ~~~~--~~-----~~~~~~~~----i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la  374 (428)
T PF13347_consen  306 LLFF--LG-----PGSPWLVL----ILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLA  374 (428)
T ss_pred             HHHH--HH-----hhhHHHHH----HHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHH
Confidence            4432  22     12233222    22236778888887888889999875322      12567788888888888888


Q ss_pred             HHHHHHHHHhc
Q 018940          180 YAIAFIVFSVS  190 (348)
Q Consensus       180 ~~~~~~~~~~~  190 (348)
                      ..+.+.++...
T Consensus       375 ~~i~g~~l~~~  385 (428)
T PF13347_consen  375 GAIVGLLLALV  385 (428)
T ss_pred             HHHHHHHHHHh
Confidence            87777776653

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.65  E-value=1.7e-06  Score=93.89  Aligned_cols=130  Identities=13%  Similarity=0.145  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHhh-CCChh-HHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcc
Q 018940           39 TAACWFTYLLLFLTDI-GLSPR-GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (348)
Q Consensus        39 ~~~~~~~~l~~~~~~~-g~s~~-~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~  116 (348)
                      .......+++.|+++. |.+.. +.|++.+...+...+++++.|+++||+++|+.+. .+.+..+++...+..  .    
T Consensus       247 ~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~-~~~~~~~~~~~~~~~--~----  319 (1146)
T PRK08633        247 ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVP-LGALGLALSLFLLPT--A----  319 (1146)
T ss_pred             HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchh-HHHHHHHHHHHHHHH--h----
Confidence            3344557778888775 99998 9999999999999999999999999999887654 455555555433321  1    


Q ss_pred             cCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Q 018940          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (348)
Q Consensus       117 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~  183 (348)
                         .+.....+    ...+++++.+....+..+++.+..+ +++|+++.+..+....+|..++..++
T Consensus       320 ---~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~p-~~~rg~~~~~~~~~~~lg~~~~~~~~  378 (1146)
T PRK08633        320 ---PSLASVLV----LFFLFGFSAGLFIVPLNALIQFRAP-EKELGKVLAANNFLQNVGMLLFLALT  378 (1146)
T ss_pred             ---hhHHHHHH----HHHHHHHHHHHhhHHHHHHHhhcCC-ccchhhhhHHHHHHHHHHHHHHHHHH
Confidence               12221211    1235667777777777888888774 57899999988888887776655443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.63  E-value=1.2e-06  Score=85.17  Aligned_cols=59  Identities=12%  Similarity=0.169  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHH
Q 018940           44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (348)
Q Consensus        44 ~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~  104 (348)
                      ..++|.|+++. .+.........+..+...+..|+.|+++||+|+||..+ .+.+..++..
T Consensus       272 s~~lp~~~~~~-~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~-~~~i~~~i~~  330 (462)
T PRK15034        272 SAGFAMLAKTQ-FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTL-INFIFMAIFS  330 (462)
T ss_pred             HHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHH-HHHHHHHHHH
Confidence            45677777663 33333444455677889999999999999999998754 4555444444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.61  E-value=8.8e-06  Score=78.05  Aligned_cols=155  Identities=16%  Similarity=0.058  Sum_probs=79.9

Q ss_pred             HHHHHHHHhh-CCChhHHHHHHHHH-HHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccc
Q 018940           45 TYLLLFLTDI-GLSPRGAAAVMLSG-QIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (348)
Q Consensus        45 ~~l~~~~~~~-g~s~~~~g~i~~~~-~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~  122 (348)
                      .+.++++.+. |.++.+.|.+.... .+...++.++.|++.||+||||.... +....++.......  ...  . ..+.
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~-~~~~~~l~~l~~~~--~~~--~-~~~~  303 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLML-FGVLQAVSNLGYWV--LAV--T-PKHL  303 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHH--HHh--c-CCcH
Confidence            4455566665 99999999998654 45688889999999999999887543 33333333221110  000  0 0122


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHH
Q 018940          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY  202 (348)
Q Consensus       123 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~  202 (348)
                      +.......+.....+.+.+........++.+..+ .+++    +..+....++...++.+++.+.          +..||
T Consensus       304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~l~~~~~~~~~G~l~----------~~~G~  368 (402)
T PRK11902        304 WTMALAIGIENLCGGMGTAAFVALLMALCNRSFS-ATQY----ALLSALASVGRVYVGPTSGYLV----------EAYGW  368 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-HHHH----HHHHHHHHHHHHHHHHHHHHHH----------HHhCh
Confidence            2111111111112333344444444444443332 2233    3333344455544443333433          24678


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 018940          203 RWIAYSSIFIGCCFVGIF  220 (348)
Q Consensus       203 ~~~~~i~~~i~~~~~ll~  220 (348)
                      +..+.+.++++++..++.
T Consensus       369 ~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        369 PGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888887776666554444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.59  E-value=4.3e-06  Score=80.11  Aligned_cols=125  Identities=10%  Similarity=-0.009  Sum_probs=84.2

Q ss_pred             HHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccch
Q 018940           45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (348)
Q Consensus        45 ~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~  123 (348)
                      ..++.|+++. |.|+.+.|.+.+...+...+++++.|++.||+++|+.. ..+. ..++....+..   +      .+.+
T Consensus       226 ~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~-~~g~-~~~~~~~~~~~---~------~~~~  294 (393)
T PRK11195        226 FLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVL-PAGI-LMGLVVLLMAL---Q------HSLL  294 (393)
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH-HHHH-HHHHHHHHHHH---H------hHHH
Confidence            4456677776 99999999999999999999999999999999987754 3443 22222221110   1      1222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCccc-chhHHHHHHHHHHHHHHHHHHHHHH
Q 018940          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS-RVVLTSCRNAFTMVANLSLYAIAFI  185 (348)
Q Consensus       124 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-R~~~~~~~~~~~~ig~~~~~~~~~~  185 (348)
                      ..    .+...+.+.+.+...++..+.+.+.. ++|. |++..+..+...+++..++..+.+.
T Consensus       295 ~~----~~~~~~~G~~~g~~~~~~~~~~q~~~-~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~  352 (393)
T PRK11195        295 PA----YPLLILIGALGGFFVVPMNALLQHRG-HVLVGAGHSIAVQNFNENLAMLLMLGLYSL  352 (393)
T ss_pred             HH----HHHHHHHHHhhhhhhhhHHHHHHhhC-cccccchhHHHHHhHHHHHHHHHHHHHHHH
Confidence            11    11122566777777788888887754 3333 6889888888888888777666543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.59  E-value=0.00039  Score=67.87  Aligned_cols=253  Identities=8%  Similarity=-0.028  Sum_probs=123.4

Q ss_pred             ChhHHHHHHHHHHHHHHhh-hhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcC-cCCC--cccCc---------cc--
Q 018940           57 SPRGAAAVMLSGQIADGFA-TIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG-CMPC--RILST---------ST--  121 (348)
Q Consensus        57 s~~~~g~i~~~~~i~~~i~-~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~-~~~~--~~~~~---------~~--  121 (348)
                      ++..+.++-....+..++. .|+.+++++|++|+|.+-... ..+ +....+|.. ..|.  .+.++         .+  
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~-~~F-~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~  118 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI-SPF-LGFFALFAFVIYPLSDLLHPTALADKLLSLLPPG  118 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH-HHH-HHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchh
Confidence            3467788887777776666 999999999999998764322 222 222222110 0121  00000         00  


Q ss_pred             chhH-----HHHHHHHHHHHHHHHHHHH-HhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 018940          122 LKVE-----TISYCVFAAIFNVGWAATQ-VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (348)
Q Consensus       122 ~~~~-----~~~~~l~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  195 (348)
                      ..+.     -..+.++.+...+-..... .-+++.+.|+++ .+|-.|..++...+.++|.++++.+...+.......+ 
T Consensus       119 ~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t-~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~-  196 (472)
T TIGR00769       119 FMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITT-IDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLG-  196 (472)
T ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-
Confidence            0000     0011121122333223222 357888999884 5677788899989999998887765433332100000 


Q ss_pred             cchhhHH----HHHHHHHHHHHHHHHHHHHhhccccc-c-c---------ccccCCchhHHHHHHHHHhHHHHHHHHHHH
Q 018940          196 ADLENQY----RWIAYSSIFIGCCFVGIFLSRTEEPR-L-K---------MGLRGNSHARISWAYWFKKILYYQVALVYM  260 (348)
Q Consensus       196 ~~~~~g~----~~~~~i~~~i~~~~~ll~~~~~~e~~-~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  260 (348)
                       .....|    +..+.+.++.+.+... +..++.+.. . +         ++++++.+.++.++.++|+|+++.++++.+
T Consensus       197 -~~~~~~~~~~~~l~~i~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi  274 (472)
T TIGR00769       197 -PGVDGWHVSLKNLMVIVICSGLAIIL-LYWWVNRNVLTDPRSYNPALKEKKVKPKMSTMESLKFLVSSPYILDLALLVI  274 (472)
T ss_pred             -cccChHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccCCccccchhhccccCCCCCCHHHHHHHHHhCHHHHHHHHHHH
Confidence             011223    2233333333333322 323322111 0 0         111223456788999999999887766655


Q ss_pred             HHHHHHHhhhHHHHHHHhhcccccch---hhhHHhHHHHHHHHHHHHHHHHH-HHhhhh
Q 018940          261 LTRLVVNVSQAYLAFYVINDLRMGQS---AKALVPAIIYICSFIVSILLQEM-AWTGQR  315 (348)
Q Consensus       261 ~~~~~~~~~~~~~~~yl~~~~~~~~~---~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r  315 (348)
                      +.....+....-.-..+.+..--+.+   ..+-+....++.+++..++.+++ +|+|.+
T Consensus       275 ~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       275 AYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            55444443332222223332211111   12223233344444445555776 999988

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.58  E-value=4.2e-06  Score=81.40  Aligned_cols=169  Identities=16%  Similarity=0.084  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc
Q 018940           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~  121 (348)
                      .+..|....+++.|++..++-++.....+...++..+...+.||.|||+. ++.+...+++...++..   ........+
T Consensus       288 ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL-ll~~~~~~~~~~~~~~~---~~~l~~~~~  363 (485)
T KOG0569|consen  288 AIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL-LLISLSLMAVALLLMSI---ALFLSNSFG  363 (485)
T ss_pred             eeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHHH---HHHHHHHhh
Confidence            33455666666779999999999999999999999999999999998755 55666666665543321   100011111


Q ss_pred             chhHHHHHH--HHHHHHHHHHHHHHHh-HhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccch
Q 018940          122 LKVETISYC--VFAAIFNVGWAATQVA-HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (348)
Q Consensus       122 ~~~~~~~~~--l~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~  198 (348)
                       .|.  .|.  ....++...++....| ..-+.+|+.+ ++.|..+.++......+...+.....+|+-..++       
T Consensus       364 -~~~--~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~-~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-------  432 (485)
T KOG0569|consen  364 -SWL--SYLCIAAIFLFIISFAIGPGPIPWFIGAELFP-QSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-------  432 (485)
T ss_pred             -hHH--HHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence             111  111  1112333334333222 2346788885 6889999999988988888888877777655443       


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 018940          199 ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (348)
Q Consensus       199 ~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~  229 (348)
                        +  ..++++.+...+..+..++.+||.+.
T Consensus       433 --~--~~filF~i~~~~~~i~~~~~lPETkg  459 (485)
T KOG0569|consen  433 --P--YVFILFVIPLAIFLIYLYRYLPETKG  459 (485)
T ss_pred             --c--hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence              1  34666778888888889999999653

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.57  E-value=1.1e-05  Score=77.22  Aligned_cols=153  Identities=20%  Similarity=0.073  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHh-hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc
Q 018940           42 CWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (348)
Q Consensus        42 ~~~~~l~~~~~~-~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~  120 (348)
                      ....++++++.+ .|.++.+.|.+.....+...++..+.|++.||.+| +.++.......+....+...   +      .
T Consensus       234 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~---~------~  303 (394)
T PRK10213        234 AFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLW---G------S  303 (394)
T ss_pred             HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHH---h------h
Confidence            345666454444 59999999999999999999999999999999644 44333222222222222111   1      1


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhh
Q 018940          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (348)
Q Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~  200 (348)
                      +.+....    ...+.+++++.......+++.+..+  +++++..+......++|..+++.+++.+.+.          .
T Consensus       304 ~~~~~~~----~~~l~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~----------~  367 (394)
T PRK10213        304 DKIVATG----VAIIWGLTFALVPVGWSTWITRSLA--DQAEKAGSIQVAVIQLANTCGAAIGGYALDN----------I  367 (394)
T ss_pred             hHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------c
Confidence            2221111    1235677777777777777776653  4455666666666677777777776666532          3


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 018940          201 QYRWIAYSSIFIGCCFVGIF  220 (348)
Q Consensus       201 g~~~~~~i~~~i~~~~~ll~  220 (348)
                      |++..+...+++..+..++.
T Consensus       368 g~~~~~~~~~~~~~~~~~~~  387 (394)
T PRK10213        368 GLTSPLMLSGTLMLLTALLV  387 (394)
T ss_pred             ChhhHHHHHHHHHHHHHHHH
Confidence            45555555555444444333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.57  E-value=3.7e-06  Score=80.45  Aligned_cols=155  Identities=12%  Similarity=-0.003  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHhh----CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccC
Q 018940           43 WFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (348)
Q Consensus        43 ~~~~l~~~~~~~----g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~  118 (348)
                      .....+.|+++.    +.+..+.|.+.++..+...+..+..|++.||+||||.+ ..+....++.......         
T Consensus       234 ~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l-~~~~~l~~l~~~~~~~---------  303 (396)
T TIGR00882       234 FDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNAL-LIAGTIMSVRIIGSSF---------  303 (396)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHHHHh---------
Confidence            334556666653    45667889999999999999999999999999999875 4555555555433221         


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCcccc
Q 018940          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (348)
Q Consensus       119 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~-~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~  197 (348)
                      ..+.+...+..    .+.+++.+...........+..+ ++.|+...+. .+....+|..+++.+.+.+.+         
T Consensus       304 ~~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~-~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~---------  369 (396)
T TIGR00882       304 ATTALEVVILK----MLHAFEVPFLLVGCFKYITSQFD-VRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD---------  369 (396)
T ss_pred             cCChHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCC-cceEEEeehHHHHHHHHHHHHHHHHhHHHHHH---------
Confidence            11222222211    23444444433323333333332 2333443333 345666677776666555553         


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHh
Q 018940          198 LENQYRWIAYSSIFIGCCFVGIFLS  222 (348)
Q Consensus       198 ~~~g~~~~~~i~~~i~~~~~ll~~~  222 (348)
                       ..||+..+.+.+++..+..++..+
T Consensus       370 -~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       370 -SIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             -hcccHHHHHHHHHHHHHHHHHHHH
Confidence             347888888777777766666544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.57  E-value=1.8e-06  Score=81.03  Aligned_cols=145  Identities=12%  Similarity=0.027  Sum_probs=85.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCC-chHHHHHH-HHHHHHHHHHH
Q 018940           31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH-FKIWHGAG-SVLVAVSFSSV  107 (348)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Gr-rr~~i~~~-~~~~~i~~~~l  107 (348)
                      +..+...........+.+.|+++. |.++.+.+.+.+...+...++.++.|+++||.++ ||..+... .....+.....
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  302 (379)
T TIGR00881       223 LGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVY  302 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence            333334444445567888898876 9999999999999999999999999999998643 33222111 11111222111


Q ss_pred             hcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~  187 (348)
                      +.  .+     ..+.... ...   ....+...............|..+ +++|++..++.+....+|+.+++.+.+.+.
T Consensus       303 ~~--~~-----~~~~~~~-~~~---~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  370 (379)
T TIGR00881       303 WL--NP-----AANPLMD-LIC---LFALGFLVYGPQMLIGVIASELAP-KKAAGTAAGFVGFFAYLGGILAGLPLGYLA  370 (379)
T ss_pred             hc--Cc-----chhHHHH-HHH---HHHHHHHHhhhhHHHHHHHHHhcC-cchhHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence            11  11     1121111 111   112332222222333456677764 678999999998888888887766655554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.55  E-value=2.9e-06  Score=80.98  Aligned_cols=61  Identities=13%  Similarity=0.006  Sum_probs=48.5

Q ss_pred             HHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHH
Q 018940           45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (348)
Q Consensus        45 ~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~  106 (348)
                      .+.+.++++. |.++.+.|.+.+...+...++.++.|+++||+||||.++ .+.....++...
T Consensus       224 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~-~~~~~~~~~~~~  285 (392)
T PRK10473        224 NTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLML-TSQVLFLAAGIT  285 (392)
T ss_pred             HhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHH
Confidence            4456666665 999999999999999999999999999999999988754 565555555543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.55  E-value=3.5e-06  Score=80.96  Aligned_cols=131  Identities=13%  Similarity=0.080  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcc-cCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccc
Q 018940           44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (348)
Q Consensus        44 ~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~  122 (348)
                      ..++|.|.++.+.++.+.|.+.++..+.......+.+++.|| ++.++.. ..+....+++...+..  .+       +.
T Consensus       228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~~~~~~~~l~~--~~-------~~  297 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRL-MAGLLIMSLSMFPIGM--VS-------NL  297 (400)
T ss_pred             HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHH--hh-------hH
Confidence            456788888874577889999888777776666666777775 5555443 4555555555433321  11       22


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018940          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (348)
Q Consensus       123 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~  189 (348)
                      .....    ...+.+.+.+...++..+++.+..+ +++|++..++.+....+|..+++.+.+.+.+.
T Consensus       298 ~~~~~----~~~l~~~g~~~~~p~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        298 QQLFT----LICLFYIGSIIAEPARETLSASLAD-ARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HHHHH----HHHHHHHHHHHHHccHHHHHHhcCC-cccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            21111    1124555666666667778888774 67899999999988888888887777776653

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.55  E-value=9.1e-06  Score=76.88  Aligned_cols=55  Identities=16%  Similarity=0.212  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHH
Q 018940           43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV   98 (348)
Q Consensus        43 ~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~   98 (348)
                      ...+.+.++.+. |.++.+.|.+..+..+...++.++.|++.||+||||.+. .+..
T Consensus       213 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~-~~~~  268 (377)
T PRK11102        213 FLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLR-FGLW  268 (377)
T ss_pred             HHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH-HHHH
Confidence            344556677775 999999999999999999999999999999999988754 3443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.54  E-value=8.9e-06  Score=77.31  Aligned_cols=142  Identities=13%  Similarity=0.017  Sum_probs=80.5

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccC---CchHHHHHHHHHHHHHH
Q 018940           28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG---HFKIWHGAGSVLVAVSF  104 (348)
Q Consensus        28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~G---rrr~~i~~~~~~~~i~~  104 (348)
                      ......+...........++|.|+++.|.|.. .+....+..+...++.   |+++||..   ||+..........++..
T Consensus       196 ~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~~~~~~~a~~~  271 (368)
T TIGR00903       196 IIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGV---AVIPDRVARAGLRSIYIRAAALLIAAFF  271 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            33334444555555667899999987788764 6666666666666554   67777654   34443332333333332


Q ss_pred             HHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 018940          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (348)
Q Consensus       105 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~  184 (348)
                      ..+..   .      .+...... ..   .+.+.+.........++.+|..| ++.|++..++.+..+.+|+..++.+.+
T Consensus       272 ~~~~~---~------~~~~~~~~-~~---~l~~~~~~~~~~~~~~~~~~~~p-~~~rgt~~G~~~~~g~~~~~~~~~~~~  337 (368)
T TIGR00903       272 LALAF---E------LNRLALFA-FI---GIAGLLMLPAYAIIMDWIGKFCD-KELHGKAAGAIGFTSRAISVALALAAM  337 (368)
T ss_pred             HHHHH---c------cccHHHHH-HH---HHHHHhhhhhHHHHHHHHHHhcc-hhhcCcccchhhHHHHHHHHHHHHHHH
Confidence            22111   1      11111111 11   12333333333446678889885 678999999999988898877665544


Q ss_pred             HHH
Q 018940          185 IVF  187 (348)
Q Consensus       185 ~~~  187 (348)
                      .++
T Consensus       338 ~~~  340 (368)
T TIGR00903       338 LFI  340 (368)
T ss_pred             HHh
Confidence            443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.53  E-value=5.1e-06  Score=90.29  Aligned_cols=153  Identities=10%  Similarity=-0.024  Sum_probs=98.3

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHH-H
Q 018940           29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS-S  106 (348)
Q Consensus        29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~-~  106 (348)
                      ..++.+......+....++|.|+++. |.++.+.|++.+...+...+++++.|+++||.++++... .+.+..++... +
T Consensus       230 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~-~~~~~~~~~~~~l  308 (1140)
T PRK06814        230 AILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVP-IGALLMGLFGLDL  308 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeeh-HHHHHHHHHHHHH
Confidence            33444444444556667889999886 999999999999999999999999999999887766543 33333333222 1


Q ss_pred             HhcCc---CCCc-------ccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHH
Q 018940          107 VFGGC---MPCR-------ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN  176 (348)
Q Consensus       107 l~~~~---~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~  176 (348)
                      .+...   .+..       +....+.+..    .+..++++++.+...++..+++.+.++ +++|+++.+..+....++.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~G~v~g~~~~~~~~~~  383 (1140)
T PRK06814        309 AFASSSVPAEPAQLKSILVFLSKRHGWRI----LIDLFGLAAAGGLYIVPLFAALQAWAN-PAHRARVIAANNVLNAAFM  383 (1140)
T ss_pred             HhcccccccccccccchhhhhcccccHHH----HHHHHHHHHHHHHhHHHHHHHHHhhCC-cccceeeeHHHHHHHHHHH
Confidence            11000   0000       0000111211    112235677777788888889888875 6789999999888888877


Q ss_pred             HHHHHHHHHHH
Q 018940          177 LSLYAIAFIVF  187 (348)
Q Consensus       177 ~~~~~~~~~~~  187 (348)
                      .+++.+.+.+.
T Consensus       384 ~ig~~~~g~l~  394 (1140)
T PRK06814        384 VAGTIILALLQ  394 (1140)
T ss_pred             HHHHHHHHHHH
Confidence            77666554443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.52  E-value=3.3e-06  Score=78.59  Aligned_cols=138  Identities=17%  Similarity=0.171  Sum_probs=94.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhh-CCC-hhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHH
Q 018940           30 GSGHMLNDITAACWFTYLLLFLTDI-GLS-PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (348)
Q Consensus        30 ~~g~~~~~~~~~~~~~~l~~~~~~~-g~s-~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l  107 (348)
                      ....+...........++|.|+++. |.+ ..+.+.+..+..+...++.++.|+++||+|+|+.... ......+....+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~  290 (352)
T PF07690_consen  212 LIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLI-AILLLILGALGL  290 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH-HHHHHHHHHHHH
Confidence            3344444445555678888886665 999 8999999999999999999999999999998777543 444444444333


Q ss_pred             hcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHH
Q 018940          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~  179 (348)
                      ..  .+    ...+..+...    ...+.+++.+...+...++..+..+ +|+|++..+..+...++|+.++
T Consensus       291 ~~--~~----~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~ig  351 (352)
T PF07690_consen  291 LL--LP----FSSSPVWLII----ALFLIGFGFGIVFPILFSLIQELVP-PEYRGTAFGLFNSIGSLGGIIG  351 (352)
T ss_dssp             CC--SH----HHCHHHHHHH----HHHHHHHHHHHHCHHHHHHHHCCCH-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH--HH----HhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHC
Confidence            21  11    0111222211    1235677777777778888888874 5789999999988888887764

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.51  E-value=1.3e-05  Score=75.78  Aligned_cols=124  Identities=16%  Similarity=0.102  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCc
Q 018940           41 ACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (348)
Q Consensus        41 ~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~  119 (348)
                      .....+.|.++++. |.++.+.|.+.....+...++.++.|+++||+||||... .+.....++...+..  .+   ...
T Consensus       223 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~---~~~  296 (385)
T TIGR00710       223 FAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLR-MGLILFAVSAVLLEI--TA---ILG  296 (385)
T ss_pred             HHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHHHH--HH---Hhc
Confidence            34455667788765 999999999999999999999999999999999988754 455555544432221  01   000


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHH
Q 018940          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA  175 (348)
Q Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig  175 (348)
                      .+....   ......+.+.+.+.......+...|..  +++|++..+..+.....+
T Consensus       297 ~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~  347 (385)
T TIGR00710       297 LGSWAM---IIGPMMFVGIGNSMISSIAMAYALEDF--PHVAGTASALFGTLRLVL  347 (385)
T ss_pred             cchHHH---HHHHHHHHHHHHHHHHHHHHHHHhccC--cccchHHHHHHHHHHHHH
Confidence            011111   111112455555555554445555543  457888888776554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10054 putative transporter; Provisional

Probab=98.49  E-value=9.2e-06  Score=77.90  Aligned_cols=174  Identities=9%  Similarity=0.064  Sum_probs=98.3

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHh---hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHH
Q 018940           28 YYGSGHMLNDITAACWFTYLLLFLTD---IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (348)
Q Consensus        28 ~~~~g~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~  104 (348)
                      .+.+..+...........+.+.|..+   .+.+....|.+..+..+.....+++.|++.||+|+|+.. ..+....+++.
T Consensus       210 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l-~~~~~~~~~~~  288 (395)
T PRK10054        210 WFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLM-TAGTLCFVIGL  288 (395)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHH-HHHHHHHHHHH
Confidence            33344444333333333455555543   367777889999998888888899999999999988764 45555555554


Q ss_pred             HHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 018940          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (348)
Q Consensus       105 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~  184 (348)
                      ..+..   .     .++....    .+...+.+.+.....+...+.+.+..+ ++.|++..+..+ ...+|..+++.+.+
T Consensus       289 ~~~~~---~-----~~~~~~~----~~~~~~~~~g~~~~~p~~~~~~~~~~p-~~~~~~~~~~~~-~~~~G~~~Gp~~~G  354 (395)
T PRK10054        289 VGFIF---S-----GNSLLLW----GMSAAVFTVGEIIYAPGEYMLIDHIAP-PGMKASYFSAQS-LGWLGAAINPLVSG  354 (395)
T ss_pred             HHHHH---c-----chHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHhCC-cccceehHhHHH-HHHHHHHHHHHHHH
Confidence            32211   1     1122211    111235566665555555667777764 467777766543 44466666666665


Q ss_pred             HHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018940          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (348)
Q Consensus       185 ~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e  226 (348)
                      .+.+.          .|.+..+.+.++...+..++.....+|
T Consensus       355 ~l~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (395)
T PRK10054        355 VILTT----------LPPWSLFVILALAIVAAWLLMLKGMRA  386 (395)
T ss_pred             HHHHH----------cChhhHHHHHHHHHHHHHHHHHhcccc
Confidence            65543          244555555444444443444333344

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.48  E-value=2.5e-06  Score=84.48  Aligned_cols=172  Identities=11%  Similarity=-0.066  Sum_probs=88.6

Q ss_pred             HHHHHHHHHhhCCChhHHHH------------HHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCc
Q 018940           44 FTYLLLFLTDIGLSPRGAAA------------VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (348)
Q Consensus        44 ~~~l~~~~~~~g~s~~~~g~------------i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~  111 (348)
                      ..+.|.++++.|.+..+.+.            ...+..+...++..+.|+++||+|||+.++ .+....++....+.. .
T Consensus       308 ~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~-~~~~~~~~~~~~l~~-~  385 (502)
T TIGR00887       308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQL-MGFFILTVLFFVLGF-A  385 (502)
T ss_pred             ccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHH-HHHHHHHHHHHHHHH-H
Confidence            34567777766775432211            122334455567788999999999987754 455554544432211 0


Q ss_pred             CCCcccCcccchhHHHHHHHHHHHHHHHHHH-HHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018940          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAA-TQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (348)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~  190 (348)
                      ..    ........ ..+.    .....++. .......+.+|+.| .+.|++..++.+..+.+++.+++.+.+.+...-
T Consensus       386 ~~----~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~E~~p-~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~  455 (502)
T TIGR00887       386 YN----HLSTHGFL-AIYV----LAQFFANFGPNATTFIVPGEVFP-TRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG  455 (502)
T ss_pred             HH----hcchhHHH-HHHH----HHHHHHhcCCCchhhhhhhccCc-hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence            00    00011111 1111    11111111 11123345678875 578999999999888888888776655444311


Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018940          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (348)
Q Consensus       191 ~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~  228 (348)
                      +...+.+...++...+.+++++.++..+. .+++||.+
T Consensus       456 ~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~  492 (502)
T TIGR00887       456 DPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETK  492 (502)
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHH-heEeccCC
Confidence            00000000134455666666666655443 45678854

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.45  E-value=3.1e-05  Score=76.82  Aligned_cols=154  Identities=12%  Similarity=0.006  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc
Q 018940           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (348)
Q Consensus        42 ~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~  120 (348)
                      .....+|.+.++. |.++...|++.+...+...++..+.+++.+|.++++.. ..+.+..++++..+..  .       .
T Consensus       236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv-~~~~~~~a~~~~~lal--~-------~  305 (524)
T PF05977_consen  236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLV-LLASLLFALALLLLAL--S-------P  305 (524)
T ss_pred             HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhh-HHHHHHHHHHHHHHhc--c-------h
Confidence            3345567777776 99999999999999999999999999999999887764 4566666665543321  1       1


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhh
Q 018940          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (348)
Q Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~  200 (348)
                      +.+.....    ..+.|.+........++.+.+.+| ++.|+++.+..+.....+..+++.+.+.+...          .
T Consensus       306 ~~~~~~~~----l~l~G~~~~~~~~~~~t~~Q~~~P-~~~~GRv~si~~~~~~g~~~lGsll~G~la~~----------~  370 (524)
T PF05977_consen  306 SFWLALIA----LFLAGAAWIIANSSLNTLVQLSVP-DWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH----------F  370 (524)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCC-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------h
Confidence            22222111    135667777777777777777764 67899999998877777777777666665543          3


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 018940          201 QYRWIAYSSIFIGCCFVGIF  220 (348)
Q Consensus       201 g~~~~~~i~~~i~~~~~ll~  220 (348)
                      |-+..+.+.++..++..++.
T Consensus       371 g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  371 GVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             CHHHHHHHHHHHHHHHHHHH
Confidence            44555555554444444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00901 2A0125 AmpG-related permease

Probab=98.42  E-value=7.6e-06  Score=76.95  Aligned_cols=129  Identities=11%  Similarity=0.064  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHH-HHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCC
Q 018940           36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQ-IADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC  114 (348)
Q Consensus        36 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~-i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~  114 (348)
                      ..........++++|+++.|.++.+.|.+..+.. +...++.++.|+++||+||||..+ .+.+..++.......  .+.
T Consensus       221 ~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~-~~~~~~~~~~~~~~~--~~~  297 (356)
T TIGR00901       221 YKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALL-LFGIVQALTNAGFVW--LAS  297 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHH--HHh
Confidence            3444445567888898888999999998887655 567788999999999999988754 455555554432211  110


Q ss_pred             cccC----cccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHH
Q 018940          115 RILS----TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT  172 (348)
Q Consensus       115 ~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~  172 (348)
                      ....    ..+.+..    .....+.+++.+...++..+++.+.+| +++|++..++.+...
T Consensus       298 ~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       298 NGHHDGITFPHLLML----FLTITLEAVTGGLGTVAFVAFLSKLSN-PKFGATQMALLSSLS  354 (356)
T ss_pred             cCcccccccchHHHH----HHHHHHHHHHhHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHH
Confidence            0000    0111111    111124567777888888999999885 688999988776554

>PRK09669 putative symporter YagG; Provisional

Probab=98.41  E-value=4.4e-05  Score=74.29  Aligned_cols=135  Identities=15%  Similarity=0.096  Sum_probs=81.5

Q ss_pred             HHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccc
Q 018940           44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (348)
Q Consensus        44 ~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~  122 (348)
                      ....++|.++. +. +...+.+.....+...++.+++++++||+||||.+. .+....++....++.  .+     ..+.
T Consensus       249 ~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~-~~~~~~~~~~~~~~~--~~-----~~~~  319 (444)
T PRK09669        249 GGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFK-WTIVAFVILSALIFF--IP-----PSNV  319 (444)
T ss_pred             hhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH-HHHHHHHHHHHHHHH--hC-----cchH
Confidence            34343443444 33 334445666667778888899999999999998865 344443332222221  12     1222


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018940          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST------SRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (348)
Q Consensus       123 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~  191 (348)
                      . ..   .+...+.+++.+.......++++|..+..|      +.+...+..+....+|..+++.+.+.+++..+
T Consensus       320 ~-~~---~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        320 W-LI---FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             H-HH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            2 11   112236777788777778889988764211      12346677777888888888888777776543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.41  E-value=3.6e-05  Score=75.59  Aligned_cols=151  Identities=11%  Similarity=0.074  Sum_probs=91.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcC
Q 018940           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (348)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~  110 (348)
                      ...+...........+.++|.+...-++...+.+..+..+...++.|++++++||+||||.++ .+....+++....+. 
T Consensus       238 ~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~-~~~~~~~~~~~~~~~-  315 (473)
T PRK10429        238 GMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWA-GASIFPVLSCGVLLL-  315 (473)
T ss_pred             HHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH-HHHHHHHHHHHHHHH-
Confidence            334444444455556655554544335667777888778889999999999999999998865 454444444332221 


Q ss_pred             cCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcc----c--chhHHHHHHHHHHHHHHHHHHHHH
Q 018940          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST----S--RVVLTSCRNAFTMVANLSLYAIAF  184 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~--R~~~~~~~~~~~~ig~~~~~~~~~  184 (348)
                       ..  +....+.. ..   .+...+.+++.+.......++++|..+..|    +  .+...+.......+|..+++.+.+
T Consensus       316 -~~--~~~~~~~~-~~---~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g  388 (473)
T PRK10429        316 -MG--LAAPHNAL-LI---VIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG  388 (473)
T ss_pred             -Hh--ccCchhHH-HH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence             00  00111212 21   112235667777777777888988864211    1  234677777788888888888877


Q ss_pred             HHHHhc
Q 018940          185 IVFSVS  190 (348)
Q Consensus       185 ~~~~~~  190 (348)
                      .+++..
T Consensus       389 ~~l~~~  394 (473)
T PRK10429        389 VVLGLI  394 (473)
T ss_pred             HHHHHc
Confidence            777654

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.38  E-value=1.9e-05  Score=73.36  Aligned_cols=243  Identities=12%  Similarity=0.044  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhc-----ccCCchHHHHHHHHHHHHHHHHHhcCc
Q 018940           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID-----RFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (348)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~D-----r~Grrr~~i~~~~~~~~i~~~~l~~~~  111 (348)
                      .+..++.. -+|..++.-|.|-++.|.....+.=.  -....+..+.|     |+||||.|+.-...+....+..+-. +
T Consensus        44 GiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~-~  119 (510)
T KOG3574|consen   44 GIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSY-L  119 (510)
T ss_pred             CCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhh-C
Confidence            44444444 45555554488888877654443211  13567888888     8999999987554444444433221 2


Q ss_pred             CCCccc-CcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 018940          112 MPCRIL-STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS--  188 (348)
Q Consensus       112 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~--  188 (348)
                      ++-... +...+......+.+  .++++..+...++..++.-.+- ++|+-+-++.....+.+.|..++..+...+-.  
T Consensus       120 v~~~~g~ng~~p~v~~lt~~f--~LLnflaAtQDIAVDgwALtmL-s~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~d  196 (510)
T KOG3574|consen  120 VDRGLGGNGGLPNVVALTLLF--LLLNFLAATQDIAVDGWALTML-SRENLGYASTCQSVGQTAGYFLGNVVFLALESPD  196 (510)
T ss_pred             CCcccccCCCCcchHHHHHHH--HHHHHHHhhhhhhhhHHHHHhc-CHhhcCchhHHHHHHHhhhHHhhcceeeEecChh
Confidence            332222 11111112221111  2566666777777777776666 45677888887777888887776544211110  


Q ss_pred             h----ccCCcccc----hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHH---HHHHHhHHHHHHHH
Q 018940          189 V----STAKTHAD----LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISW---AYWFKKILYYQVAL  257 (348)
Q Consensus       189 ~----~~~~~~~~----~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l  257 (348)
                      +    +-.. +.|    .-.|+-|   ..+.+.++...+..+.-+|+++...++.+...++.+   ++.++-|..+++.+
T Consensus       197 F~N~y~rs~-P~~~g~ItL~gy~~---fwg~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~~yk~l~~vLklk~v~~la~  272 (510)
T KOG3574|consen  197 FCNTYLRSI-PLDQGFITLAGYLW---FWGALFIVATTLVALLKKENDESVDEELELGIHESYKLLRDVLKLKSVRWLAG  272 (510)
T ss_pred             hhhHHHhcC-cCccceEEhhHHHH---HHHHHHHHHHHHHHHhcCCCchhhhhhhhcCHHHHHHHHHHHHcCccHHHHHH
Confidence            0    0000 000    0112221   223344444455555666644332222233334444   45566677777777


Q ss_pred             HHHHHHHHHHhhhHHHHHHHhhcccccchhhhHH
Q 018940          258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALV  291 (348)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~  291 (348)
                      .....-.+..+.....+.-+.|+ |.+.++.++.
T Consensus       273 i~lt~K~gf~a~da~t~LkLle~-Gv~ke~Lal~  305 (510)
T KOG3574|consen  273 ILLTGKLGFQAADALTSLKLLEH-GVPKEELALI  305 (510)
T ss_pred             HHHHHHHHhhhhhhccchHHHHc-CCChhHheee
Confidence            66666677778888888888876 8877765543

>PRK10133 L-fucose transporter; Provisional

Probab=98.36  E-value=4.4e-05  Score=74.33  Aligned_cols=111  Identities=14%  Similarity=0.016  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHH-Hhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccC
Q 018940           41 ACWFTYLLLFL-TDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (348)
Q Consensus        41 ~~~~~~l~~~~-~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~  118 (348)
                      .....|++.|+ ++. |.|+.+.|.......+...++.++.|++.||+||||... .+....++.+.....  .+     
T Consensus       275 ~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~-~~~~~~~~~~~~~~~--~~-----  346 (438)
T PRK10133        275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLA-AYALIAMALCLISAF--AG-----  346 (438)
T ss_pred             HHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH-HHHHHHHHHHHHHHH--cC-----
Confidence            33456778785 555 999999999999999999999999999999999998754 444443333322211  11     


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHH
Q 018940          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR  168 (348)
Q Consensus       119 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~  168 (348)
                        +.. ....+    .+.+++.+...++..+...+..+  ++.+..+++.
T Consensus       347 --~~~-~~~~~----~l~glg~~~i~P~~~s~a~~~~~--~~~~~as~l~  387 (438)
T PRK10133        347 --GHV-GLIAL----TLCSAFMSIQYPTIFSLGIKNLG--QDTKYGSSFI  387 (438)
T ss_pred             --ChH-HHHHH----HHHHHHHHHHHHHHHHHHHcccc--hhhccchhHH
Confidence              111 11111    25677778777777777766542  3344555544

>TIGR00898 2A0119 cation transport protein

Probab=98.36  E-value=4.5e-05  Score=75.36  Aligned_cols=147  Identities=12%  Similarity=-0.022  Sum_probs=84.8

Q ss_pred             hhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHH
Q 018940           53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVF  132 (348)
Q Consensus        53 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  132 (348)
                      +.+.+.....   ....+....+.++.++++||+|||+.+. .+.+..+++...+..  .+     ...........   
T Consensus       352 ~~~~~~~~~~---~~~~~~~i~~~~~~~~l~dr~grr~~~~-~~~~~~~~~~l~~~~--~~-----~~~~~~~~~~~---  417 (505)
T TIGR00898       352 NLGGNIYLDL---FISGLVELPAKLITLLLIDRLGRRYTMA-ASLLLAGVALLLLLF--VP-----VDLYFLRTALA---  417 (505)
T ss_pred             ccCCChHHHH---HHHHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHH--cC-----CCchHHHHHHH---
Confidence            3455543333   3445666778889999999999998754 555555555543321  22     11111111111   


Q ss_pred             HHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHH
Q 018940          133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFI  212 (348)
Q Consensus       133 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i  212 (348)
                       .+.+.+.+.......++.+|..| ++.|++..++.+....+|+++++.+.+ +           ...++...+.+++..
T Consensus       418 -~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-----------~~~~~~~~~~~~~~~  483 (505)
T TIGR00898       418 -VLGKFGITSAFQMVYLYTAELYP-TVVRNLGVGVCSTMARVGSIISPFLVY-L-----------GEKWLFLPLVLFGGL  483 (505)
T ss_pred             -HHHHHHHHHHHHHHHHHhccccc-HHHHhhhHhHHHHHHHHHHHHHhHHHH-H-----------HHHHHhhHHHHHHHH
Confidence             12333344444445677788875 567999988888887888777655433 1           123455566666666


Q ss_pred             HHHHHHHHHhhccccc
Q 018940          213 GCCFVGIFLSRTEEPR  228 (348)
Q Consensus       213 ~~~~~ll~~~~~~e~~  228 (348)
                      .++..++. .+.||.+
T Consensus       484 ~~~~~~~~-~~lpet~  498 (505)
T TIGR00898       484 ALLAGILT-LFLPETK  498 (505)
T ss_pred             HHHHHHHH-HcCcCCC
Confidence            66655554 4567754

>TIGR01272 gluP glucose/galactose transporter

Probab=98.35  E-value=4.8e-05  Score=70.53  Aligned_cols=123  Identities=10%  Similarity=-0.035  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHhh---CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcc
Q 018940           40 AACWFTYLLLFLTDI---GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (348)
Q Consensus        40 ~~~~~~~l~~~~~~~---g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~  116 (348)
                      ...+..+++.|++|.   |+++.+.+...+......+++..+.++++||+|+||.+ ..+....++...+...  .+   
T Consensus       156 e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l-~~~~~l~~~~~~l~~~--~~---  229 (310)
T TIGR01272       156 EVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL-AFNAFLAVLLSIGAAL--TH---  229 (310)
T ss_pred             HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHHHHHHHHHHHH--cC---
Confidence            345568899999752   99999999999999999999999999999999998864 4555555554432221  11   


Q ss_pred             cCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHH
Q 018940          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (348)
Q Consensus       117 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~  180 (348)
                          +.. ..  +.+  .+.+++.+...+...++..+..+  ++.+..+++. ....+|+.+.+
T Consensus       230 ----~~~-~~--~~~--~l~g~~~s~i~P~~~s~a~~~~~--~~~~~asai~-~~~~~Gg~i~P  281 (310)
T TIGR01272       230 ----GYV-AM--WFV--LALGLFNSIMFPTIFSLALNALG--RHTSQGSGIL-CLAIVGGAIVP  281 (310)
T ss_pred             ----CHH-HH--HHH--HHHHHHHHHHHHHHHHHHHhhhh--hhhhhhHHHH-HHHHhcchHHH
Confidence                111 11  111  24566666666665566655443  2334455543 34445554443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11043 putative transporter; Provisional

Probab=98.34  E-value=6e-05  Score=72.08  Aligned_cols=131  Identities=15%  Similarity=0.113  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc
Q 018940           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~  121 (348)
                      ....+.|.++++.|.++.+.|.......+...++..+.+++.||+|+||.. ..+.+..++....++.  ...  ....+
T Consensus       221 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~-~~~~~~~~~~~~~~~~--~~~--~~~~~  295 (401)
T PRK11043        221 AWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL-PWLLVLFAVSVIAIWL--ASL--LSHPS  295 (401)
T ss_pred             HHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH-HHHHHHHHHHHHHHHH--HHH--hccCc
Confidence            344667777776799999999988888888888999999999999988754 2333333333221110  000  00112


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Q 018940          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (348)
Q Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~  183 (348)
                      .....+..    .+.+.+.+.......+...+..  +++|++..++.+.....++..++.+.
T Consensus       296 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~~~~~~~~~~  351 (401)
T PRK11043        296 LVPLLIPF----CVMAAANGAIYPIVVAQALRPF--PQATGKAAALQNTLQLGLCFLASLLV  351 (401)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHhhhC--cccChHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111    2344555554444444443433  46789999988876655555544433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.34  E-value=1.7e-05  Score=77.52  Aligned_cols=179  Identities=14%  Similarity=0.052  Sum_probs=105.2

Q ss_pred             hhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccC--------CchHHHHHH
Q 018940           26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFG--------HFKIWHGAG   96 (348)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~G--------rrr~~i~~~   96 (348)
                      ..+-.+.+++......+...|+|.|++|+ |.+-.+.|++.++..+...+...+.|.++||.-        +||.+-..+
T Consensus       260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~  339 (466)
T KOG2532|consen  260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIA  339 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHH
Confidence            34555677888888888899999999998 999999999999999999999999999999753        344443334


Q ss_pred             HHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHH
Q 018940           97 SVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN  176 (348)
Q Consensus        97 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~  176 (348)
                      ....++.+..+-  ..+     ........+.+.+.....+...+....+    ..+.  .|+.-+.+.+..+....+++
T Consensus       340 ~~~~ai~l~~l~--~~~-----~~~~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~--apq~a~~l~g~~~~~~~~~~  406 (466)
T KOG2532|consen  340 FGGPAVFLLVLA--FTS-----DEHRLLAVILLTIAIGLSGFNISGFYKN----HQDI--APQHAGFVMGIINFVGALAG  406 (466)
T ss_pred             HHHHHHHHHeee--ecC-----CCcchHHHHHHHHHHHHcccchhhhHhh----hhhc--cchHHHHHHHHHHHHHHHHH
Confidence            444444333221  122     1122222222221111111111111111    1111  23444566666665555555


Q ss_pred             HHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 018940          177 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRT  224 (348)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~  224 (348)
                      +++    +.+++.+.. +  +...+|++.|.+.+.+.++..++..++-
T Consensus       407 ~~~----P~~vg~~~~-~--~t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  407 FIA----PLLVGIIVT-D--NTREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHH----HHheeeEeC-C--CCHHHHHHHHHHHHHHHHHhchheeEee
Confidence            543    333343332 1  2467899999998888777775555443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.31  E-value=2.4e-06  Score=80.39  Aligned_cols=124  Identities=19%  Similarity=0.102  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccC
Q 018940           40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (348)
Q Consensus        40 ~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~  118 (348)
                      ...+..+++.|+++. |.++.+.|.+..+..+...++.++.|+++||+||||.+. .+....+.+...+..  ..   ..
T Consensus       241 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~-~~~~~~~~~~~~~~~--~~---~~  314 (366)
T TIGR00886       241 FLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLL-MSFLGVAMGAFLVVL--GL---VS  314 (366)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHH-HHHHHHHHHHHHHHh--cC---CC
Confidence            345567888899886 999999999999999999999999999999999988754 344444444332221  01   00


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHH
Q 018940          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA  175 (348)
Q Consensus       119 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig  175 (348)
                      ..+.........    +...+.+....+..+..++..+  ++|+...++.+...++|
T Consensus       315 ~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       315 PLSLAVFIVLFV----ALFFFSGAGNGSTFALVPHIFR--RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             cchHHHHHHHHH----HHHHHhccccchhhhcchhhch--hhcccHHHHHHHhccCC
Confidence            002221111111    2333344444445567777663  57888888766655443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.28  E-value=7.6e-05  Score=66.70  Aligned_cols=129  Identities=19%  Similarity=0.234  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc
Q 018940           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~  121 (348)
                      .+..|-+...++.|+|.+|+..+.....+...+ .++.|.+.||+|+|.. +..|+....++...++. +.... .+..+
T Consensus        20 ~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~-l~iG~~~~~~GY~~~~l-~~~~~-i~~~~   95 (250)
T PF06813_consen   20 TFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVV-LLIGAVLGFVGYGLLWL-AVSGR-IPSLP   95 (250)
T ss_pred             chhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHH-HHhCc-cCccc
Confidence            344555555555699999999999999999886 6999999999998765 56788888888766553 11111 01112


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHH
Q 018940          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (348)
Q Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~  180 (348)
                      . +....+.   .+.+.+.+..+.+.  +...+..-|++||.+.++......+++.+-.
T Consensus        96 ~-~~~~~~~---~l~~~s~~~~~ta~--lvt~~~NFP~~RG~vvgilk~~~GLSaai~t  148 (250)
T PF06813_consen   96 V-WLMCLFL---FLGGNSSCWFNTAS--LVTCVRNFPRSRGTVVGILKGFFGLSAAIFT  148 (250)
T ss_pred             h-HHHHHHH---HHHcccHHHhhhHH--HHHHHHhCccccCceehhhhHHHHhHHHHHH
Confidence            2 2322222   12333333333332  2222222357899999988887777766543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.27  E-value=8.8e-05  Score=71.72  Aligned_cols=147  Identities=17%  Similarity=0.133  Sum_probs=101.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcC
Q 018940           32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (348)
Q Consensus        32 g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~  110 (348)
                      ..+..........+...+|.+.. |-+................++.+++.++++|+||||.+. .+.++.+++...++. 
T Consensus       244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~-~~~~~~~i~~~~~~f-  321 (467)
T COG2211         244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFL-IGLLLLAVGYLLLYF-  321 (467)
T ss_pred             HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH-HHHHHHHHHHHHHHh-
Confidence            34444444455556666666665 888888888888888888888999999999999999986 577777777766653 


Q ss_pred             cCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCccc------c-hhHHHHHHHHHHHHHHHHHHHH
Q 018940          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS------R-VVLTSCRNAFTMVANLSLYAIA  183 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------R-~~~~~~~~~~~~ig~~~~~~~~  183 (348)
                       +|     ..+....++    ...+.+++.+..+.-..++++|... ++|      | |...+......-+|..+++++.
T Consensus       322 -~~-----~~~~~l~~~----~~~i~~~g~~~~~~l~wam~~d~vD-yge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~  390 (467)
T COG2211         322 -TP-----AGSVVLIVV----ALIIAGVGTGIANPLPWAMVADTVD-YGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP  390 (467)
T ss_pred             -hc-----CcchHHHHH----HHHHHHHHhhccccccHHHhcchhh-HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence             34     123332211    1236678888877778899998763 222      2 3455666677777888888887


Q ss_pred             HHHHHhcc
Q 018940          184 FIVFSVST  191 (348)
Q Consensus       184 ~~~~~~~~  191 (348)
                      ++.++..+
T Consensus       391 g~~L~~~G  398 (467)
T COG2211         391 GWILGAIG  398 (467)
T ss_pred             HHHHHHcC
Confidence            78877654

>PRK11462 putative transporter; Provisional

Probab=98.19  E-value=0.00063  Score=66.68  Aligned_cols=136  Identities=10%  Similarity=0.023  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCc
Q 018940           41 ACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (348)
Q Consensus        41 ~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~  119 (348)
                      ........+|.+.. |.+ ...+.++.+..+..+++.+++++++||+|||+.+...............+   .|     .
T Consensus       245 ~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~---~~-----~  315 (460)
T PRK11462        245 CVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFF---VP-----M  315 (460)
T ss_pred             HHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---hc-----h
Confidence            33344444555554 443 34566777888888899999999999999988754322222222222222   22     1


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCc-----ccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018940          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS-----TSR-VVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (348)
Q Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~R-~~~~~~~~~~~~ig~~~~~~~~~~~~~~  189 (348)
                      .+.....+ .   ..+.+++.+.......++++|.....     ++| +...+.......+|..+++.+.+.+++.
T Consensus       316 ~~~~~~~~-~---~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~  387 (460)
T PRK11462        316 QASITMFV-F---IFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY  387 (460)
T ss_pred             hHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12111111 1   12345555555555567777765311     122 2334555667788888888877777764

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.17  E-value=0.00049  Score=65.84  Aligned_cols=170  Identities=11%  Similarity=0.028  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhh----CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcC
Q 018940           35 LNDITAACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (348)
Q Consensus        35 ~~~~~~~~~~~~l~~~~~~~----g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~  110 (348)
                      +....+.+.....+.|+++.    +.++...|.+.++..+..++.-.+..++.+|+|.|+.+++. ...+++=...... 
T Consensus       231 g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Llla-g~i~~iRi~~~~~-  308 (412)
T PF01306_consen  231 GVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLA-GVIMAIRIIGSGF-  308 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHH-HHHHHHHHHHHhh-
Confidence            33344455555667777764    45677899999999999999999999999999999887654 3444443332221 


Q ss_pred             cCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 018940          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFSV  189 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~-~~~~~ig~~~~~~~~~~~~~~  189 (348)
                       .       .+.++....    -.+-++-++...++..-++.+.. |++......... +...++|..+.+...+.+.  
T Consensus       309 -~-------~~~~~i~~~----klLH~~e~~l~lva~fkYI~~~f-d~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly--  373 (412)
T PF01306_consen  309 -A-------TNPWVISLI----KLLHALEFPLLLVAAFKYITAHF-DKRLSATLYLVGFQFAKQIGIIILSPLAGYLY--  373 (412)
T ss_dssp             ----------SHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHS--GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH--
T ss_pred             -h-------cchHHHHHH----HHHHHHHHHHHHHHHHHHHHHhC-CHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH--
Confidence             1       233322221    13555666666666666676654 222222332221 2333444444433333332  


Q ss_pred             ccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 018940          190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (348)
Q Consensus       190 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~  229 (348)
                              +..|++.++.+.+.+.++..++.++..+++++
T Consensus       374 --------d~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  374 --------DRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             --------hhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence                    36788888888888888888888888776443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.11  E-value=0.0043  Score=59.27  Aligned_cols=127  Identities=11%  Similarity=0.038  Sum_probs=77.0

Q ss_pred             HHHHHHHHhh--CCChhHHH-HHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc
Q 018940           45 TYLLLFLTDI--GLSPRGAA-AVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (348)
Q Consensus        45 ~~l~~~~~~~--g~s~~~~g-~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~  121 (348)
                      +|+.+|+.+.  |++..|+- -+.-+..=.....-.+...+.|..|-| |.++.+++...+...++.+   .      .+
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk-pviil~~~~~i~t~~lll~---~------~s   93 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK-PVIILQALSYIITWLLLLF---G------TS   93 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH---H------Cc
Confidence            8999999874  89988885 455555556666778999999988765 6566666665555443322   1      12


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (348)
Q Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~  187 (348)
                      ....-+.-    +..|++. +..+++.+++=... ++++--++.+...+...+|..+++.++..++
T Consensus        94 v~~mq~~q----~~yg~~~-a~evay~sYiys~v-~~~~yq~vts~~raa~l~g~~~s~~lgQllv  153 (412)
T PF01770_consen   94 VLAMQLMQ----FFYGLAT-AAEVAYYSYIYSVV-DKEHYQKVTSYTRAATLVGRFISSLLGQLLV  153 (412)
T ss_pred             HHHHHHHH----HHHHHHH-HHHHHHHHHheeec-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22221111    1233322 34566666665444 3444456777777777777777777665444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.10  E-value=0.00026  Score=67.01  Aligned_cols=131  Identities=11%  Similarity=0.102  Sum_probs=91.7

Q ss_pred             HHHHHHHHHh-hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccc
Q 018940           44 FTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (348)
Q Consensus        44 ~~~l~~~~~~-~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~  122 (348)
                      ...-..|-.+ .|++.+++.++.....+..+++..+.|++.||+|.|+.++ .+.+...+.....++   .      .. 
T Consensus       272 l~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~-~~lvi~~~~~~~~~~---~------~~-  340 (438)
T COG2270         272 LAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLM-IGLVILSIAALYLIF---L------EG-  340 (438)
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeh-HHHHHHHHHHHHHHH---c------cc-
Confidence            3555567664 5999999999999999999999999999999999987654 454444444433321   1      11 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018940          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (348)
Q Consensus       123 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~  189 (348)
                      ...+..+   ..+++...+..+...-++.+++.| +++-++..++++..+-.+...+++..+.+.+.
T Consensus       341 ~~~f~i~---gll~g~s~G~~qA~SRSy~~~lvp-~~k~~~fFglyaltgra~S~~gp~lv~v~t~i  403 (438)
T COG2270         341 ELDFWIL---GLLVGTSLGGAQASSRSYLARLVP-KGKEGRFFGLYALTGRAASFLGPFLVAVITQI  403 (438)
T ss_pred             cHHHHHH---HHHHHHhcchHHHHHHHHHHHhCC-CccccceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence            1122222   236778888888888899999986 45667888888888777777766655444433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.09  E-value=0.00046  Score=65.82  Aligned_cols=128  Identities=13%  Similarity=0.019  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc
Q 018940           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (348)
Q Consensus        42 ~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~  120 (348)
                      ....+.+.++++. |.++.+.|++.....+...++.++.+++.||+||+.. ..  .....+.....+.   +.. ....
T Consensus       225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-~~--~~~~~~~~~~~~~---~~~-~~~~  297 (394)
T PRK11652        225 VFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW-QS--VICCLLAGLLMWI---PGW-FGVM  297 (394)
T ss_pred             HHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHH---HHH-hccc
Confidence            3345567788885 9999999999888888888899999999999984332 22  1111222111110   100 0001


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Q 018940          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (348)
Q Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~  182 (348)
                      +....    .+...+.+.+.+...+...+...+..  +++++...+..+...++|+.+++.+
T Consensus       298 ~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~lg~~~~~~~  353 (394)
T PRK11652        298 NVWTL----LVPAALFFFGAGMLFPLATSGAMEPF--PYLAGTAGALLGGLQNIGSGLAALL  353 (394)
T ss_pred             cHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhc--cccchHHHHHHHHHHHHHHHHHHHH
Confidence            11111    11112455666666666666666654  3578888888877777777665543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.05  E-value=1e-05  Score=72.41  Aligned_cols=265  Identities=9%  Similarity=0.038  Sum_probs=133.2

Q ss_pred             CCChhHHHHHHHHHHHHHHhhhhhhHhhhcc-cCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHH
Q 018940           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA  133 (348)
Q Consensus        55 g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  133 (348)
                      +++.++.-++.+++.....+...+.|++.|| +|-|.--++. +....++- +.|.  ..       ...-.+....+..
T Consensus        75 ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~-~~fv~~Gq-liFa--~G-------gi~~aFw~M~~GR  143 (459)
T KOG4686|consen   75 NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIIL-CIFVFLGQ-LIFA--AG-------GISHAFWTMLAGR  143 (459)
T ss_pred             ccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHH-HHHHHHHH-HHHH--hc-------hHHHHHHHHHhhh
Confidence            6777788999999999999999999999996 6665332222 22222222 1231  11       1111111222223


Q ss_pred             HHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCcccchhhHHHHHH-HH
Q 018940          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV----STAKTHADLENQYRWIA-YS  208 (348)
Q Consensus       134 ~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~-~i  208 (348)
                      +++|+|.-...+..+.++....+ -||-..+.++.....-+|..+--.+.+++...    +++.  +....|-...+ ..
T Consensus       144 F~FGIGgESlAVaQN~yav~wFK-GKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~--ghT~LG~~l~~~~~  220 (459)
T KOG4686|consen  144 FLFGIGGESLAVAQNKYAVYWFK-GKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGV--GHTLLGLWLCFEVK  220 (459)
T ss_pred             eeeccCchhhhhhhcceeEEEec-CccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccc--hHHHHHHHHHHHHH
Confidence            46776655666777777777665 36677777777666666654433333444332    2211  01112211111 11


Q ss_pred             HHHHHHHHHHHHHhhcccccc---ccccc-CCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccccc
Q 018940          209 SIFIGCCFVGIFLSRTEEPRL---KMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMG  284 (348)
Q Consensus       209 ~~~i~~~~~ll~~~~~~e~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~  284 (348)
                      .....++++ +..-+.+++..   ..++. ..+.+|..-...++ |++|.+.++-++...+..-+.+.-|.++++..|++
T Consensus       221 tc~~slica-l~lg~~D~rAerilh~e~g~~Ge~pkLtdv~~f~-ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS  298 (459)
T KOG4686|consen  221 TCKQSLICA-LSLGLSDDRAERILHLEEGFLGEEPKLTDVNTFY-PPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLS  298 (459)
T ss_pred             HHHHHHHHH-HHhhhhhhHHHHHHhhhcCcccCCcccccccccC-ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCC
Confidence            112222222 22223333211   11110 01111111112233 45565433333333333334445567889999999


Q ss_pred             chhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHH-HHHHHHHHHHHHHhHhhc
Q 018940          285 QSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAY-YSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       285 ~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~-~~~g~~l~~v~~~~~~~~  337 (348)
                      +.+++.+....+.-+...+++.+.+ ||.|++  .. +..+.+....+...++|-
T Consensus       299 ~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n--~~wv~~a~~~tl~~H~~l~Ft  351 (459)
T KOG4686|consen  299 AVSAGNILSTVYGISAVLSPVFGAISDKYGFN--LWWVASACILTLLGHSGLFFT  351 (459)
T ss_pred             hhhccchhhhhhhhhhhhhhhHHHhHhhhcce--ehhHHHHHHHHHHHhhhHHhh
Confidence            8765544444444555566666766 999999  54 344455566666555554

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.00087  Score=64.90  Aligned_cols=258  Identities=10%  Similarity=-0.032  Sum_probs=131.4

Q ss_pred             HHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHH
Q 018940           65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ  144 (348)
Q Consensus        65 ~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  144 (348)
                      .++-.....+...+.+.+.|+.|.|..+. .++.....-....+.   |      +.+.     +.+...+.|+|.+..+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv-~ga~~y~~f~~gfl~---~------N~y~-----~yfssallG~Gaallw  120 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALV-IGATCYAAFPLGFLF---P------NSYY-----LYFSSALLGFGAALLW  120 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHH-HHhHHHHHHHHHHHh---c------chHH-----HHHHHHHhhhhHHhee
Confidence            66667777888999999999999987754 455444433322221   2      1111     1223357888888888


Q ss_pred             HhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHH--------H---HHHHHHHHH
Q 018940          145 VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR--------W---IAYSSIFIG  213 (348)
Q Consensus       145 ~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~---~~~i~~~i~  213 (348)
                      ..+...+.+..+ ++.+.+..++.......+.+++++.. ..+......+ +....+.+        .   ...+++++.
T Consensus       121 ~GqG~ylt~~st-~~tie~Nisi~Wai~~~~li~Ggi~l-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  197 (461)
T KOG3098|consen  121 TGQGGYLTSNST-RETIERNISIFWAIGQSSLIIGGIIL-FIYFQFSSSS-AIITDGTRRLVFEVLFIDFEIKVLFGVLL  197 (461)
T ss_pred             cccceehhhcCC-hhhHHHHHHHHHHHHHHHHHhhhHhh-eeeeEecccc-cccccchhhhhcchhhhhHHHHHHHHHHH
Confidence            888888888764 56677888877777777777665542 1111111100 00011111        0   111111111


Q ss_pred             HHHH--HHHHhhcccccccccccCC-chhHHHHHH---HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccch-
Q 018940          214 CCFV--GIFLSRTEEPRLKMGLRGN-SHARISWAY---WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS-  286 (348)
Q Consensus       214 ~~~~--ll~~~~~~e~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~-  286 (348)
                      ....  .+.....|.++...++++. +..++.+|.   ++++|+...+...++....-.......+|+.+.-....... 
T Consensus       198 ~~~~l~~i~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~  277 (461)
T KOG3098|consen  198 AISVLSIINFDFLPSKDVVNCKSSSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNT  277 (461)
T ss_pred             HHHHHHhhheeecCccchhhhhhhccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcc
Confidence            1111  1111122221111111111 233344333   45567766666665555555556666777776554333222 


Q ss_pred             --hhhHHhHHHHHHHHHHHHHHHHH----HHhhhhhhHHHHHHHHHHHHHHHhHhhc-cCCce
Q 018940          287 --AKALVPAIIYICSFIVSILLQEM----AWTGQRLKAYYSAGGVLWVFCGAGILIL-PMNMS  342 (348)
Q Consensus       287 --~~~~~~~~~~~~~i~g~~~~~~l----~r~g~r~k~~~~~g~~l~~v~~~~~~~~-~~~~~  342 (348)
                        ..++.....+++.+++.+..+.+    +|+|++  +.+.++..+-.+++++...- |.+.|
T Consensus       278 ~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~--~~~~~~~~~~~~~~~li~l~~p~dap  338 (461)
T KOG3098|consen  278 TYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK--PTVLIGIIIHLIGFLLIHLSFPNDAP  338 (461)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC--cchhHHHHHHHHHHHHHhccccccCC
Confidence              22334444455556655555544    445555  77777766665555444433 55554

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.99  E-value=0.019  Score=55.61  Aligned_cols=56  Identities=5%  Similarity=-0.073  Sum_probs=41.6

Q ss_pred             hhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHH
Q 018940          269 SQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW  327 (348)
Q Consensus       269 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~  327 (348)
                      +....-.|+..+ |++....+.+=....+.++.|..+.|++ +|+|..  |+=.+++...
T Consensus       277 f~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlv--r~G~~~l~~q  333 (432)
T PF06963_consen  277 FGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLV--RAGLWSLWWQ  333 (432)
T ss_pred             CcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhHHHHHHHH
Confidence            455566777777 9998877766666667788899999998 999988  6655555543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.91  E-value=0.0002  Score=70.88  Aligned_cols=173  Identities=14%  Similarity=0.099  Sum_probs=107.2

Q ss_pred             hhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHH
Q 018940           26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (348)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~  105 (348)
                      ...++++...+.+.......+++.|..+.|.+..+++.++++..+.+.++-++.|+++|+...++.++...+++ ..+..
T Consensus       300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll-~~gl~  378 (509)
T KOG2504|consen  300 FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLL-IAGLA  378 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHH-HHHHH
Confidence            35666776666676677778888888877999999999999999999999999999999987555544322222 22222


Q ss_pred             HHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 018940          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (348)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~  185 (348)
                      .++.   |.    ..++. ..+.+.   .++|...+....-..-.+.++.. .++-..+.++......++.+++    +|
T Consensus       379 ~~~~---p~----~~~~~-~l~~~~---~~fG~~~g~~~~l~~~i~~~~~g-~~~l~~a~Gl~l~~~gi~~l~g----pP  442 (509)
T KOG2504|consen  379 RLFL---PF----ATTYV-GLIVFS---ILFGFCVGSFSSLTPVILVDLVG-LEKLSNAYGLLLLFQGIGALVG----PP  442 (509)
T ss_pred             HHHH---HH----hccHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHcC-hhhcchHHHHHHHHhHHHHHcC----cc
Confidence            2332   31    12332 222232   24555555444333345556653 4455677787777777766664    45


Q ss_pred             HHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 018940          186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF  220 (348)
Q Consensus       186 ~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~  220 (348)
                      +.+.+-+     ....|...++.+++..++..++.
T Consensus       443 iag~~~d-----~tg~Y~~~f~~~g~~~~~s~~~~  472 (509)
T KOG2504|consen  443 IAGLLYD-----ITGNYDHAFYFCGLCFLLSAVLL  472 (509)
T ss_pred             cceeeee-----ccCCeeeehhhcChHHHHHHHHH
Confidence            4443321     12237777887776666555444

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.87  E-value=9.8e-05  Score=72.55  Aligned_cols=83  Identities=17%  Similarity=0.152  Sum_probs=66.2

Q ss_pred             HhhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcc----cCCchHHHHHHHHH
Q 018940           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSVL   99 (348)
Q Consensus        25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr----~Grrr~~i~~~~~~   99 (348)
                      ....|++..+......+....++|.|+++. |.|..+.+.+.....+..+++.+++|.++||    +.+|..+.....+.
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            467788888888888888889999999995 8999999999999999999999999999999    66665555444445


Q ss_pred             HHHHHHHH
Q 018940          100 VAVSFSSV  107 (348)
Q Consensus       100 ~~i~~~~l  107 (348)
                      ..++...+
T Consensus       354 ~~~g~~~l  361 (495)
T KOG2533|consen  354 AIIGAISL  361 (495)
T ss_pred             HHHHHHHH
Confidence            44553433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.87  E-value=0.0008  Score=66.22  Aligned_cols=164  Identities=8%  Similarity=-0.118  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhh-CCC----hhHHHHHHHHHHHHHHhhhhhhH----hhhcc-cCCchHH-HHHHHHHHHHHHHHHhcC--
Q 018940           44 FTYLLLFLTDI-GLS----PRGAAAVMLSGQIADGFATIFIG----ELIDR-FGHFKIW-HGAGSVLVAVSFSSVFGG--  110 (348)
Q Consensus        44 ~~~l~~~~~~~-g~s----~~~~g~i~~~~~i~~~i~~p~~G----~l~Dr-~Grrr~~-i~~~~~~~~i~~~~l~~~--  110 (348)
                      .+.++.|.++. +.+    ....+++.++..+...+.+|+..    ++.|| .+++.+. +..|.++.++++..+...  
T Consensus       292 ~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~  371 (475)
T TIGR00924       292 PTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIW  371 (475)
T ss_pred             hhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566666553 332    22377889999999999999866    45555 2223222 145666666665433200  


Q ss_pred             cCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018940          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~  190 (348)
                      ....  ....+.++....+.    +.++|.....+...+++.+.+| ++.|+++.+.......+|..+++.+.....   
T Consensus       372 ~~~~--~~~~s~~~~i~~~~----~~~~ge~~~~p~~~~~~~~~aP-~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~---  441 (475)
T TIGR00924       372 FADA--GGLTSPWFMVLIYL----FQTLGELMISPLGLSWWTKIAP-QRLMGQMLGMWFLAQAMGSLLGGYLATFGA---  441 (475)
T ss_pred             hcCC--CCccCHHHHHHHHH----HHHHHHHHHhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            0000  00134454444443    6778888888888899999885 678999999998888888887766543221   


Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 018940          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRT  224 (348)
Q Consensus       191 ~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~  224 (348)
                             ...+|.+.+...+++.++..++.++..
T Consensus       442 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       442 -------VPQGVTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             -------cccchhhHHHHHHHHHHHHHHHHHHHH
Confidence                   122455555555555555455444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.72  E-value=0.00038  Score=50.38  Aligned_cols=66  Identities=18%  Similarity=0.276  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHH
Q 018940          255 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAG  323 (348)
Q Consensus       255 ~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g  323 (348)
                      +-..+++...+.....+|+|.|+.+ .|++..+.+++..+..+..++++++.+.+ ||.+|+  +.+..+
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~--~~~l~~   71 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR--KVILLG   71 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc--HHHHHH
Confidence            4456667777888899999999996 79999998888888888899999999998 999999  544443

>TIGR00788 fbt folate/biopterin transporter

Probab=97.71  E-value=0.0008  Score=66.12  Aligned_cols=131  Identities=8%  Similarity=-0.030  Sum_probs=89.7

Q ss_pred             hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCc--ccchhHHHHHHH
Q 018940           54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST--STLKVETISYCV  131 (348)
Q Consensus        54 ~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~--~~~~~~~~~~~l  131 (348)
                      .|.|+.+.|.+..+..+..+++....+++.+|++.|+.+. .+.+..+++...... ... .+...  .+..+....   
T Consensus       283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~-~~~~l~~~~~~~~~~-l~~-~~~~~~gi~~~~~~~~---  356 (468)
T TIGR00788       283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFG-VTTLLYTLSSLFDLI-LVK-RWNLAFGISDEVFVLG---  356 (468)
T ss_pred             CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHhCcee-eee-ccccccCCCCeeeeee---
Confidence            3999999999999999999999999999999999887754 555555554421100 000 00000  011111111   


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018940          132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (348)
Q Consensus       132 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~  191 (348)
                      ...+.+++++....|...++.+..+ +++++...++.+...++|..+++.+++.+...++
T Consensus       357 ~~~l~~~~~g~~~~~~~~~~~~~~p-~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       357 DSIIAEVLAQLKFMPFLVLLARLCP-SGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             hhHHHHHHHHHHHccHHHHHHHhCC-CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            1125667777888888899999885 6788999888888889998888877777766654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.68  E-value=0.00026  Score=69.70  Aligned_cols=84  Identities=15%  Similarity=0.135  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHh-hhhhhHHHHHHHHHH
Q 018940          250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWT-GQRLKAYYSAGGVLW  327 (348)
Q Consensus       250 ~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~-g~r~k~~~~~g~~l~  327 (348)
                      |.++.+........+.+++...++|.|+++.+|++..+.+...........++.++.|++ ||+ |||  |++.+|.++.
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr--r~iliG~il~   86 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR--MAVMLGALLM   86 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH--HHHHHHHHHH
Confidence            345555666677778899999999999999999988776666565666777888899998 998 999  9999999998


Q ss_pred             HHHHHhHh
Q 018940          328 VFCGAGIL  335 (348)
Q Consensus       328 ~v~~~~~~  335 (348)
                      +++++.+.
T Consensus        87 ~lg~lll~   94 (493)
T PRK15462         87 AIGHVVLG   94 (493)
T ss_pred             HHHHHHHH
Confidence            88876554

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.64  E-value=0.0036  Score=62.05  Aligned_cols=157  Identities=11%  Similarity=-0.038  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHhhhhhh----HhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCccc--CcccchhHHHHHHHHHH
Q 018940           61 AAAVMLSGQIADGFATIFI----GELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL--STSTLKVETISYCVFAA  134 (348)
Q Consensus        61 ~g~i~~~~~i~~~i~~p~~----G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~--~~~~~~~~~~~~~l~~~  134 (348)
                      .+++.++..+...+.+|+.    +++.||.+.++. +..|..+.++++..+..  .+....  ...+.++....+    .
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~-~~~G~~l~~l~f~~l~~--~~~~~~~~~~vs~~~~~~~~----~  390 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHK-FAIGMVLCSGAFLVLPL--GAKFANDAGIVSVNWLIASY----G  390 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHH-HHHHHHHHHHHHHHHHH--HHHhcCCCCccCHHHHHHHH----H
Confidence            5667777887777888887    555555554444 34577777777654321  010000  011223343333    3


Q ss_pred             HHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHH
Q 018940          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC  214 (348)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~  214 (348)
                      +.++|.....+...+++.+.+| ++.|++..+.......+|+.+++.+....-......+......++.+.+...+++.+
T Consensus       391 l~~~ge~~~~p~g~s~~~~~aP-~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  469 (500)
T PRK09584        391 LQSIGELMISGLGLAMVAQLVP-QRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATA  469 (500)
T ss_pred             HHHHHHHHHhHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHH
Confidence            6778888888888888888885 678999999887776677666554432100000000000011246677776666665


Q ss_pred             HHHHHHHhhcc
Q 018940          215 CFVGIFLSRTE  225 (348)
Q Consensus       215 ~~~ll~~~~~~  225 (348)
                      +.+++.+...|
T Consensus       470 ~~a~~~~~~~~  480 (500)
T PRK09584        470 VIAVLMLLTAP  480 (500)
T ss_pred             HHHHHHHHHHH
Confidence            55555444333

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.60  E-value=0.088  Score=51.87  Aligned_cols=167  Identities=11%  Similarity=0.037  Sum_probs=85.4

Q ss_pred             hHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHH----HHHHHHHHHHHHHHHH
Q 018940          146 AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI----AYSSIFIGCCFVGIFL  221 (348)
Q Consensus       146 ~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~i~~~i~~~~~ll~~  221 (348)
                      -+++.+.|+++ .+|-.|..++...+.++|.++++.+...+........ .....+|...    +.+..+.+.+...+ .
T Consensus       164 LFW~fAN~itt-~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~v~~~g~~i~~~-~  240 (491)
T PF03219_consen  164 LFWGFANEITT-VEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSL-PAGVDAWELSLNSLMGIVLILGIVIILL-Y  240 (491)
T ss_pred             HHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccccccHhHHHHHHHHHHHHHHHHHHHH-H
Confidence            36788888874 5677788888888989988887766544433111100 0012334322    22222222222222 2


Q ss_pred             hhccc-----ccc------cccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccch---h
Q 018940          222 SRTEE-----PRL------KMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS---A  287 (348)
Q Consensus       222 ~~~~e-----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~---~  287 (348)
                      .++.+     ++.      +++++++.+.+|.++.++|+|+++.+++...+.+...+....-.-..+.+...-+.+   .
T Consensus       241 ~~~~~~vl~~~~~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysaf  320 (491)
T PF03219_consen  241 RYMNKNVLTDPRFYPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAF  320 (491)
T ss_pred             HHHHHHccCccccchhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            22221     111      011123445678888999999988776665555555444433332333333222222   1


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHH-HHhhhh
Q 018940          288 KALVPAIIYICSFIVSILLQEM-AWTGQR  315 (348)
Q Consensus       288 ~~~~~~~~~~~~i~g~~~~~~l-~r~g~r  315 (348)
                      ++-+....++.+++..++.+.+ +|+|.+
T Consensus       321 mG~~~~~tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  321 MGKFSSWTGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            2222333344455555667776 999988

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.56  E-value=0.0005  Score=67.95  Aligned_cols=87  Identities=10%  Similarity=0.060  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HH-hhhhhhHHHHHHHHHH
Q 018940          250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AW-TGQRLKAYYSAGGVLW  327 (348)
Q Consensus       250 ~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r-~g~r~k~~~~~g~~l~  327 (348)
                      |.++.+.+..++..+.+++...+++.|+++++|++.++.+...........+..+++|++ || +|||  |++..|.+++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r--~~~~~g~~~~   91 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK--RTIVLGAIVL   91 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH--HHHHHHHHHH
Confidence            345556667777889999999999999999999988766544444444555556788898 99 9999  9999999999


Q ss_pred             HHHHHhHhhcc
Q 018940          328 VFCGAGILILP  338 (348)
Q Consensus       328 ~v~~~~~~~~~  338 (348)
                      +++++...+.+
T Consensus        92 ~~g~~~~~~~~  102 (489)
T PRK10207         92 AIGYFMTGMSL  102 (489)
T ss_pred             HHHHHHHHHhc
Confidence            99998777654

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.53  E-value=0.018  Score=51.18  Aligned_cols=153  Identities=14%  Similarity=0.096  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHhhCCCh--hHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCc
Q 018940           42 CWFTYLLLFLTDIGLSP--RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~--~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~  119 (348)
                      ......+.+..+.+.+.  .+.++......+...+.+++.|+++||+|||+.++ .+.....++......  .+     .
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~--~~-----~   91 (338)
T COG0477          20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLI-IGLLLFLLGTLLLAL--AP-----N   91 (338)
T ss_pred             hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHH-HHHHHHHHHHHHHHh--Cc-----c
Confidence            33455556666665554  58899999999999999999999999999986654 444332333222211  11     1


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCcccch
Q 018940          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFSVSTAKTHADL  198 (348)
Q Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~-~~~ig~~~~~~~~~~~~~~~~~~~~~~~  198 (348)
                      ......    .+.....+.+.+.......+++.+..++.++|+...+.... ...+|..+++.+.+.+...        .
T Consensus        92 ~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  159 (338)
T COG0477          92 VGLALL----LILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA--------L  159 (338)
T ss_pred             chHHHH----HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence            111212    11112355666666667778888876420356766666555 3444555544332222211        1


Q ss_pred             hhHHHHHHHHHHHHHH
Q 018940          199 ENQYRWIAYSSIFIGC  214 (348)
Q Consensus       199 ~~g~~~~~~i~~~i~~  214 (348)
                      ..+|++.+.+......
T Consensus       160 ~~~~~~~~~~~~~~~~  175 (338)
T COG0477         160 LWGWRAAFLLAALLGL  175 (338)
T ss_pred             hcchHHHHHHHHHHHH
Confidence            3578886655544443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.49  E-value=0.00016  Score=70.16  Aligned_cols=66  Identities=17%  Similarity=0.226  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHH
Q 018940           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l  107 (348)
                      ...++++.|..++|+++.+.|.+...-+++.++..|++|.++||+.|||++++.+.+......+++
T Consensus        29 ~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll   94 (618)
T KOG3762|consen   29 SLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLL   94 (618)
T ss_pred             ccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhe
Confidence            345888999999999999999999999999999999999999999999998776655555554443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.48  E-value=0.015  Score=56.14  Aligned_cols=51  Identities=14%  Similarity=0.126  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchH
Q 018940           41 ACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKI   91 (348)
Q Consensus        41 ~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~   91 (348)
                      .....+.|.++++. |.++.+.|+..........++..+.+++.+|.+++|.
T Consensus       235 ~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~  286 (413)
T PRK15403        235 MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF  286 (413)
T ss_pred             HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence            34445678888887 9999999999877788888888899988765544443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.37  E-value=0.023  Score=54.73  Aligned_cols=63  Identities=11%  Similarity=0.127  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhh--CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHH
Q 018940           41 ACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (348)
Q Consensus        41 ~~~~~~l~~~~~~~--g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~  104 (348)
                      ....++++.|.++.  +.+....+...+.......++..+.|++.||.++||.+.+ .....++..
T Consensus       249 ~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i-~~~~~~~~~  313 (410)
T TIGR00885       249 IMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMA-YAIIGMALC  313 (410)
T ss_pred             HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH-HHHHHHHHH
Confidence            34568888898764  5566666666666667888999999999999999887543 444444443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.33  E-value=0.036  Score=53.92  Aligned_cols=235  Identities=11%  Similarity=0.072  Sum_probs=113.8

Q ss_pred             HHHHHHhh--CCChhHHHHHHHHH-HHHHHhhhhhhHhhhc-----ccCCchHHHHHHHHHHHHHHHHHhcCcCC-----
Q 018940           47 LLLFLTDI--GLSPRGAAAVMLSG-QIADGFATIFIGELID-----RFGHFKIWHGAGSVLVAVSFSSVFGGCMP-----  113 (348)
Q Consensus        47 l~~~~~~~--g~s~~~~g~i~~~~-~i~~~i~~p~~G~l~D-----r~Grrr~~i~~~~~~~~i~~~~l~~~~~~-----  113 (348)
                      +|..+++.  ++|-+|.|....+. +..   ...++..+.|     |+||||.|++-.-.+..+.++.+-. ...     
T Consensus        23 iPflL~~~~~~~sy~q~~~fSla~~PfS---lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~-~i~~~~~~   98 (544)
T PF13000_consen   23 IPFLLQSMAKKVSYSQQAIFSLASYPFS---LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSY-NISQWLLF   98 (544)
T ss_pred             chhhhccccCCCChhHheeeeeeechhH---HHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHh-ccchhhcc
Confidence            44555552  77877777653222 211   2345555555     8999999987665555555433321 120     


Q ss_pred             ----Cccc-Ccccch------hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Q 018940          114 ----CRIL-STSTLK------VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (348)
Q Consensus       114 ----~~~~-~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~  182 (348)
                          ..+. ...+..      .+...+.    ++.+..+-..++...+.-.+. ++|+++-++.....|++.|..++..+
T Consensus        99 ~~~~d~~~~~~~~~~~~~~i~~Lt~~F~----~L~fl~ATQDIAVDGWALT~L-s~~n~~~ASTcqtvG~~~Gyfls~tv  173 (544)
T PF13000_consen   99 DGVDDALLGQGESTVNNITIKFLTWFFF----ILVFLCATQDIAVDGWALTML-SPENVGYASTCQTVGQTAGYFLSFTV  173 (544)
T ss_pred             cccchhhhcCCCCcccccchhHHHHHHH----HHHHHHccCCceeehhhhhhc-ChhhcchHHHHHHhHhhhhHHHHHHH
Confidence                0000 000100      0111111    122222334444445554444 46778888888888888887776544


Q ss_pred             HHHHH-----HhccCCcccc----hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccc-----c-----c----------
Q 018940          183 AFIVF-----SVSTAKTHAD----LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-----G-----L----------  233 (348)
Q Consensus       183 ~~~~~-----~~~~~~~~~~----~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~-----~-----~----------  233 (348)
                      ...+=     +......+.|    .-.||   ....|.+-++......++.+|++..+     +     +          
T Consensus       174 Flalns~~f~Nky~r~~p~~~glvtl~~y---l~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (544)
T PF13000_consen  174 FLALNSPDFCNKYLRSTPSDEGLVTLSGY---LKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDGKSKEISIEY  250 (544)
T ss_pred             HHhhCCHHHHHHhcccCCCCCCeeeHHHH---HHHHHHHHHHHHHHHheEeecccccccCccccccccccccccccceec
Confidence            21110     0000000111    01122   12233344444444556666643110     0     0          


Q ss_pred             -cCC-------chhHHHH---HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHH
Q 018940          234 -RGN-------SHARISW---AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAI  294 (348)
Q Consensus       234 -~~~-------~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~  294 (348)
                       +++       .+.++.+   .+++|.|..+.+.+....+..++.....--..-+.|. |++++..++...+
T Consensus       251 ~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEk-G~~KE~LAl~~li  321 (544)
T PF13000_consen  251 DESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEK-GLSKEDLALLVLI  321 (544)
T ss_pred             ccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHc-CCCHHHhHHHHHH
Confidence             000       0112222   3455667766677777777777777776666777764 9988877655444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.31  E-value=0.037  Score=52.60  Aligned_cols=170  Identities=12%  Similarity=-0.011  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCc
Q 018940           37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (348)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~  115 (348)
                      .+..++....+=||=.++ |+|..+..-+.........++-...|++..|..+++.+...|+...++++..+.. .-+  
T Consensus       221 t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~-a~~--  297 (403)
T PF03209_consen  221 TLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL-AGP--  297 (403)
T ss_pred             HHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH-HHh--
Confidence            333344455566676777 9999888888888888888888889999985433344566788888887754331 001  


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 018940          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (348)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~  195 (348)
                         ..+.+ .   +.....++|++.+.+.+..-+.+.+++. +++.+...+.+...+.++..++...++.+.+.......
T Consensus       298 ---~~~~~-~---~~~~~~l~G~g~G~f~vgals~mM~lt~-~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~  369 (403)
T PF03209_consen  298 ---LGSPW-L---FRPGVFLLGLGNGLFTVGALSLMMDLTS-AGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFG  369 (403)
T ss_pred             ---cccch-H---HHHHHHHHHHhhhHHHHHHHHHHHhCCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               11222 2   1222247888888888888888888884 45667777777777777776766666665543211000


Q ss_pred             cchhhHHHHHHHHHHHHHHHHH
Q 018940          196 ADLENQYRWIAYSSIFIGCCFV  217 (348)
Q Consensus       196 ~~~~~g~~~~~~i~~~i~~~~~  217 (348)
                      .++..+|...|.+=++..++..
T Consensus       370 ~~~~~aY~~VF~lEa~ll~~a~  391 (403)
T PF03209_consen  370 NSPALAYGVVFALEAVLLLAAL  391 (403)
T ss_pred             CCcchHHHHHHHHHHHHHHHHH
Confidence            1245678877766544444333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.0016  Score=61.19  Aligned_cols=157  Identities=12%  Similarity=0.114  Sum_probs=81.9

Q ss_pred             HHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccch
Q 018940           45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (348)
Q Consensus        45 ~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~  123 (348)
                      +-++.+..|. ..+..+.|+...-..+.+.++.+++|.++||+++-| |.....-+..++ ....  ++|.    .++..
T Consensus       291 Ptlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~-wl~~~~gl~~~G-~~~~--~iP~----~~~~~  362 (464)
T KOG3764|consen  291 PTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLR-WLLSLGGLATVG-VSSG--PIPF----ATSIA  362 (464)
T ss_pred             cccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchh-HHHHHHHHHHHH-HHhc--hhHh----hhhHH
Confidence            4445555554 767779999999999999999999999999999654 332211111222 1111  2341    12222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH---HhHhhhhhhcccCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccch
Q 018940          124 VETISYCVFAAIFNVGWAATQ---VAHMSMVNCITLNS--TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (348)
Q Consensus       124 ~~~~~~~l~~~~~~~~~~~~~---~~~~a~~~~~~~~~--~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~  198 (348)
                      .+.+-.    ...+++.+...   .|...+.-|...+.  +--+...++......+|..+++.+++.++          .
T Consensus       363 ~L~vp~----~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv----------~  428 (464)
T KOG3764|consen  363 QLWVPN----FGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV----------E  428 (464)
T ss_pred             HHhhhh----HHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhe----------e
Confidence            221111    12233333322   23333333322111  01234555555555555555433322221          3


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhh
Q 018940          199 ENQYRWIAYSSIFIGCCFVGIFLSR  223 (348)
Q Consensus       199 ~~g~~~~~~i~~~i~~~~~ll~~~~  223 (348)
                      ..||.|...+.++.-++..-++.++
T Consensus       429 ~iGF~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  429 AIGFEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             ehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789998888877777666555443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.24  E-value=0.0024  Score=63.52  Aligned_cols=169  Identities=14%  Similarity=-0.002  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCc-
Q 018940           41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST-  119 (348)
Q Consensus        41 ~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~-  119 (348)
                      ..+..|.+.++++.|.+... .....+..+...++..+.+.+.||+|||+.+ +.+...++++...+..  ... .... 
T Consensus       312 ~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ll-l~s~~~m~~~~~~~~~--~~~-~~~~~  386 (513)
T KOG0254|consen  312 NYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLL-LFGAAGMSICLVILAV--VGV-FALYY  386 (513)
T ss_pred             ceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHhHHHHHHHHHHHHH--HHH-HhccC
Confidence            34446666777666555332 3344445555666666779999999998764 5777777777654321  000 0000 


Q ss_pred             ----ccchhHHHHHHHHHHHHHHHHHHHHHhHh-hhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 018940          120 ----STLKVETISYCVFAAIFNVGWAATQVAHM-SMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT  194 (348)
Q Consensus       120 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~  194 (348)
                          ....+..+...   .++-..++....|.. .+.+|+.| .+-|++..++........+.............     
T Consensus       387 ~~~~~~~~~~~~~~~---~~~v~~f~~g~g~v~w~~~sEifp-~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~-----  457 (513)
T KOG0254|consen  387 PNSSKGAGWLAIVFL---CLFIFSFAIGWGPVPWVIVSEIFP-LRLRSKGASLAVAVNWLWNFLISFFFPFITEA-----  457 (513)
T ss_pred             CCcccchhHHHHHHH---HHHHHHHhcccccchhhhhhccCc-HhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence                01111111111   122222332222222 35577764 56777777776666555554433332222211     


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHH-HHHhhccccc
Q 018940          195 HADLENQYRWIAYSSIFIGCCFVG-IFLSRTEEPR  228 (348)
Q Consensus       195 ~~~~~~g~~~~~~i~~~i~~~~~l-l~~~~~~e~~  228 (348)
                           .++...+..++.+..+... ..++.+||.+
T Consensus       458 -----~~~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  458 -----LGIGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             -----ccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence                 1123344555455555555 5677788854

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.20  E-value=0.044  Score=53.85  Aligned_cols=153  Identities=11%  Similarity=0.032  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCc-----------ccchhHHHHHHHHH
Q 018940           65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST-----------STLKVETISYCVFA  133 (348)
Q Consensus        65 ~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~l~~  133 (348)
                      .....+...+.+.+.-++++|+|+||.+-..+.++.++++...+.  +.. ..+.           .+.........+..
T Consensus       311 l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~--i~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  387 (477)
T TIGR01301       311 LMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVL--VTY-VAKNSRYYDGDGESLPPPTGIKASALIVF  387 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH--HHh-hhhccccccccccccCcchhhHHHHHHHH
Confidence            444455555667777888889996444334565666666543321  110 0000           00100001112222


Q ss_pred             HHHHHHHHHHHHhHhhhhhhcccC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHH
Q 018940          134 AIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFI  212 (348)
Q Consensus       134 ~~~~~~~~~~~~~~~a~~~~~~~~-~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i  212 (348)
                      ...|+.++..+.--.+++++..++ .++.|...++.|....+.+++.+...+++...+++        +-.+.+.+.++.
T Consensus       388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------~~~~~~~~~gv~  459 (477)
T TIGR01301       388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------GNLPAFVVGAVA  459 (477)
T ss_pred             HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------CCeeHHHHHHHH
Confidence            367777775544334567666543 23448899999999999999988877786666553        123345666777


Q ss_pred             HHHHHHHHHhhccccc
Q 018940          213 GCCFVGIFLSRTEEPR  228 (348)
Q Consensus       213 ~~~~~ll~~~~~~e~~  228 (348)
                      .++.++..++.+|+++
T Consensus       460 ~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       460 AFVSGLLALILLPRPR  475 (477)
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            7777888888887753

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.92  E-value=0.0051  Score=54.75  Aligned_cols=175  Identities=11%  Similarity=0.079  Sum_probs=84.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccc--cccccc--
Q 018940          159 TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR--LKMGLR--  234 (348)
Q Consensus       159 ~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~--~~~~~~--  234 (348)
                      ++|+..+.+-..+.++|.+++...  .+... ..  .......|++.+.+.+++.++..++...+-+|-+  .+++++  
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ip--F~~~~-~~--~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k   76 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIP--FLISS-SV--VIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQEK   76 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhh--HHhcc-hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccccc
Confidence            567777777777888888775532  22210 00  0012456999888877766665555544433311  111111  


Q ss_pred             --CCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---hcc--ccc----c----hhhhHHhHHHHHHH
Q 018940          235 --GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI---NDL--RMG----Q----SAKALVPAIIYICS  299 (348)
Q Consensus       235 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~---~~~--~~~----~----~~~~~~~~~~~~~~  299 (348)
                        .+.+.++..++.+|+|+-|...+.+...-.  ..+.++-+.+..   +.-  +.+    .    ....+...+...+.
T Consensus        77 ~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv--~~V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~fv~g~  154 (267)
T PF07672_consen   77 ENSTLSKKPSYKSILKEKETWKWILIYGIWLV--VVVFPFTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQILFVAGY  154 (267)
T ss_pred             ccccccccchHHHHHccchHHHHHHHHHHHhe--eEEEeccchhHhHhhhcCcccccccccccccchhhHHHHHHHHHHH
Confidence              112234567889999987765444432211  111111112221   111  110    1    11223333333444


Q ss_pred             HHHHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHhHhhccCC
Q 018940          300 FIVSILLQEMAWTGQRLKAY----YSAGGVLWVFCGAGILILPMN  340 (348)
Q Consensus       300 i~g~~~~~~l~r~g~r~k~~----~~~g~~l~~v~~~~~~~~~~~  340 (348)
                      ++|.+..++++|..-|+|+.    +..|.+++++.++..++..++
T Consensus       155 ~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~  199 (267)
T PF07672_consen  155 FLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPG  199 (267)
T ss_pred             hhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            56766677776655221343    334566666666665454443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=96.74  E-value=0.0072  Score=56.56  Aligned_cols=132  Identities=9%  Similarity=-0.017  Sum_probs=74.5

Q ss_pred             HHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHh
Q 018940           69 QIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHM  148 (348)
Q Consensus        69 ~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  148 (348)
                      .+...=+..+.|++.||+||||.+. ...+++++..++++. |..       +.......+     ..-...+......+
T Consensus       391 slaefPGlLIt~~iverlGRKkTMa-l~l~~f~iflfll~~-c~~-------rn~~tvllf-----~arafisg~fqvaY  456 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMA-LSLILFGIFLFLLTT-CKT-------RNAYTVLLF-----TARAFISGAFQVAY  456 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHH-hcC-------cchhHHHHH-----HHHHHHhchheEEE
Confidence            3344445679999999999999965 466666666655553 221       111111111     11122233333356


Q ss_pred             hhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018940          149 SMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (348)
Q Consensus       149 a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~  227 (348)
                      .+.+|+.|. +-|+...+......-+|+++.+.++  +.   .       +.+-..+..+++...++..+..+++--|+
T Consensus       457 vYtPEVyPT-avRatgvGtcSsmaRIggI~~p~iA--~~---~-------e~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  457 VYTPEVYPT-AVRATGVGTCSSMARIGGIFSPVIA--MR---A-------ELSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             EecCcccch-hhhhcchhhhhhHHhhhhhhhhHHH--HH---h-------ccceeehHHHHHHHHHHHHHHheeeeecc
Confidence            788888864 6788777777777777887766554  21   1       11112233456666666666666554453

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.70  E-value=0.11  Score=49.18  Aligned_cols=115  Identities=10%  Similarity=-0.033  Sum_probs=73.5

Q ss_pred             hHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHH
Q 018940           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (348)
Q Consensus        27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~  105 (348)
                      ..+.++.+.--..--....+++.|+.+. |.++.+.+...+.+....+++-.+.-++..|+...|.+...+.+...+...
T Consensus       239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~  318 (422)
T COG0738         239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLA  318 (422)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            4444444444444445679999999996 999999999999999999999988888888998877765544333333322


Q ss_pred             HHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccc
Q 018940          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITL  156 (348)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~  156 (348)
                      ..+.   +       +.. .  .|.+  .+.+...+...+...+..-+..+
T Consensus       319 ~~l~---~-------g~v-~--~~~l--~~ig~F~simfPTIfslal~~l~  354 (422)
T COG0738         319 VALI---G-------GVV-A--LYAL--FLIGLFNSIMFPTIFSLALKNLG  354 (422)
T ss_pred             HHHh---c-------ChH-H--HHHH--HHHHHHhHHHHHHHHHHHHhccC
Confidence            2221   1       222 1  2222  25666677666666666655554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.66  E-value=0.008  Score=58.26  Aligned_cols=91  Identities=15%  Similarity=0.164  Sum_probs=64.7

Q ss_pred             HHHHhHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhhccc----ccchhhhHHhHHHHHHHHHHHHHHHHH-HH-hhhhhh
Q 018940          245 YWFKKIL-YYQVALVYMLTRLVVNVSQAYLAFYVINDLR----MGQSAKALVPAIIYICSFIVSILLQEM-AW-TGQRLK  317 (348)
Q Consensus       245 ~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~----~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r-~g~r~k  317 (348)
                      ..+++|+ ++.+...-+.-.+.+|++..-+..|+..+.+    ++.+++.-....+..-.-..++++||+ || +|+|  
T Consensus        15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~--   92 (498)
T COG3104          15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR--   92 (498)
T ss_pred             ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh--
Confidence            4566654 5556667777888999999888888887776    776543322222222223445777887 88 8999  


Q ss_pred             HHHHHHHHHHHHHHHhHhhc
Q 018940          318 AYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       318 ~~~~~g~~l~~v~~~~~~~~  337 (348)
                      |++.+|.++.++|.+++..-
T Consensus        93 ~tI~lGail~~iGh~~L~~~  112 (498)
T COG3104          93 RTIVLGAILMAIGHLVLAIS  112 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999877654

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.63  E-value=0.015  Score=52.19  Aligned_cols=62  Identities=13%  Similarity=0.180  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHH
Q 018940           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~  104 (348)
                      +..+|+=+.|++.|..+.++|-+...+.-..++...+.|.++||-||||.= +.-++...+++
T Consensus        55 LQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKrac-vtycitYiLsC  116 (454)
T KOG4332|consen   55 LQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC-VTYCITYILSC  116 (454)
T ss_pred             hcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccce-eeehHHHHHHH
Confidence            334555334455588899999999888889999999999999999999863 33344444443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.45  E-value=0.22  Score=41.14  Aligned_cols=102  Identities=14%  Similarity=0.030  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHH
Q 018940           65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ  144 (348)
Q Consensus        65 ~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  144 (348)
                      .++.....++..++...+.+|.|.|+.++ .|.+..++-....+   .|       +....    .....+.|++.+...
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~-lg~~~y~~y~~~~~---~~-------~~~~l----~~~s~l~G~~~a~lW  107 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMI-LGSLGYAIYIASFF---YP-------NSYTL----YPASALLGFGAALLW  107 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHH-HHHHHHHHHHHHHH---hh-------hHHHH----HHHHHHHhhhhHHhh
Confidence            44556666677777888899999988865 56555554443322   12       11111    222247888888889


Q ss_pred             HhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Q 018940          145 VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (348)
Q Consensus       145 ~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~  182 (348)
                      .+....+.+.. ++++|++..++.......+.+.++..
T Consensus       108 ~aqg~ylt~~s-~~~~~~~~~~ifw~i~~~s~i~G~~~  144 (156)
T PF05978_consen  108 TAQGTYLTSYS-TEETIGRNTGIFWAIFQSSLIFGNLF  144 (156)
T ss_pred             HhhhHHHHHcC-CHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            99888888876 46788888887777777776666554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.93  E-value=0.097  Score=38.43  Aligned_cols=66  Identities=18%  Similarity=0.158  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHH
Q 018940           41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (348)
Q Consensus        41 ~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l  107 (348)
                      ....+.+|.-.+|.++|.++.|++-+...+.+.++.....++.++.++|+. +..+.+..+++...+
T Consensus         9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~-~~~~l~~~~~~~~~m   74 (85)
T PF06779_consen    9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRL-LRAGLLLTVLSTAAM   74 (85)
T ss_pred             HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHH
Confidence            344566666666679999999999999999999999999999988655544 556766666665543

Note that many members are hypothetical proteins.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.87  E-value=0.13  Score=50.59  Aligned_cols=143  Identities=15%  Similarity=0.065  Sum_probs=84.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcC
Q 018940           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (348)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~  110 (348)
                      +-.+...+....+.+|+-.+++|.|-.++..|.........-.+.-++.+++..|.||-|.+. .+....++=+. ..  
T Consensus       378 ~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~-lgLa~~~~Rf~-~~--  453 (618)
T KOG3762|consen  378 FVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMY-LGLACNVGRFL-YY--  453 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceee-ehhhHHHHHHH-HH--
Confidence            334444455556667776777888877778887777777778888999999999999988754 34333333221 11  


Q ss_pred             cCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 018940          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFS  188 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~-~~~ig~~~~~~~~~~~~~  188 (348)
                        ..    ..+.|.....=    ++-++-++.......+++...+| |+-|..+.++... .-.+|--.++.+++.++.
T Consensus       454 --S~----L~n~W~vLPie----ilqgit~aliWaa~~sY~s~vaP-p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~  521 (618)
T KOG3762|consen  454 --SY----LQNPWMVLPIE----ILQGITHALIWAAIISYASHVAP-PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE  521 (618)
T ss_pred             --HH----hcCchheeeHH----HHHHHHHHHHHHHHHHHHHhhCC-CcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence              10    11223221111    14456666777777778887775 5667666654332 333444445555545443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.74  E-value=0.055  Score=55.30  Aligned_cols=76  Identities=17%  Similarity=0.214  Sum_probs=53.6

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHH-HHHhhhhhhHhhhcccCCc-hHHHHHHHHHHHHH
Q 018940           28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHF-KIWHGAGSVLVAVS  103 (348)
Q Consensus        28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i-~~~i~~p~~G~l~Dr~Grr-r~~i~~~~~~~~i~  103 (348)
                      ...+..+........+..++|.|+++. |.++.++|.+.....+ ..+++.++.|+++||++++ |..+..+.+...++
T Consensus       334 ~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~  412 (633)
T TIGR00805       334 LVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS  412 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence            344444455555556678999999886 9999999999887776 5678999999999999843 23333444433333

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=95.74  E-value=3.9e-05  Score=74.57  Aligned_cols=162  Identities=13%  Similarity=0.002  Sum_probs=83.1

Q ss_pred             HHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc---c
Q 018940           46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST---L  122 (348)
Q Consensus        46 ~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~---~  122 (348)
                      |.+..+++.|.+...  .......+...++.++...+.||+|||+.++ .+....++....+..   +.......+   .
T Consensus       275 ~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  348 (451)
T PF00083_consen  275 YSPSIFENAGISNSF--LATLILGLVNFLGTLLAIFLIDRFGRRKLLI-IGLLLMAICSLILGI---IFFLGVSSSSWWS  348 (451)
T ss_pred             ccccccccccccccc--ccccccccccccccccccccccccccccccc-ccccccccccccccc---ccccccccccccc
Confidence            334444444666551  1122334555566777789999999997754 565555555432210   000011111   1


Q ss_pred             hhHHHHHHHHHHHHHHHHH-HHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhH
Q 018940          123 KVETISYCVFAAIFNVGWA-ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (348)
Q Consensus       123 ~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g  201 (348)
                      ........    +....++ ........+.+|+.| .+.|.+..++.+..+.+++.+.+.+.+.+..          ..+
T Consensus       349 ~~~i~~~~----l~~~~~~~g~~~~~~~~~~ElfP-t~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~----------~~~  413 (451)
T PF00083_consen  349 ILSIVFLA----LFFAFFSLGWGPLPWIYTAELFP-TKVRSTGIGLSYAVGRIGGFIIPFLFPYLFN----------NLG  413 (451)
T ss_pred             cccceeee----ecccccccccccccccccccccc-ccccccccccccccccccccccccccccccc----------ccc
Confidence            11111111    1222222 222334467789886 5789888887777666666655444322221          112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccc
Q 018940          202 YRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (348)
Q Consensus       202 ~~~~~~i~~~i~~~~~ll~~~~~~e~~  228 (348)
                      -...+.+++.+.++..++.++++||.+
T Consensus       414 ~~~~~~i~~~~~~i~~i~~~~~lpET~  440 (451)
T PF00083_consen  414 GWGVFLIFAGVCLIAIIFVYFFLPETK  440 (451)
T ss_pred             ccccchhhHHHHHHHHhheeEEEeeCC
Confidence            122344555666677777888899964

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.39  E-value=0.35  Score=45.30  Aligned_cols=73  Identities=14%  Similarity=0.147  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHh
Q 018940          258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAG  333 (348)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~  333 (348)
                      .+.+...+-+.-.+|.-..+ +++|++..+.+.+.....+.+.+...+.+.+ ||+|||  +.-+.-+++..++|+.
T Consensus        42 vY~La~~aDWLQGpY~Y~LY-~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk--~~cl~~cily~~scl~  115 (354)
T PF05631_consen   42 VYLLAMAADWLQGPYLYALY-ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK--KACLLFCILYSLSCLT  115 (354)
T ss_pred             HHHHHHHHHHhhcchhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--HHHHHHHHHHHHHHHH
Confidence            33344444444444443333 3579988777765555555666655566666 999999  7666666777777753

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.60  E-value=0.56  Score=44.43  Aligned_cols=77  Identities=8%  Similarity=-0.147  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhHhhhhhhcccCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHH
Q 018940          135 IFNVGWAATQVAHMSMVNCITLNS--TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFI  212 (348)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~~~~~~--~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i  212 (348)
                      +..+|.|..-++..++.+|..+++  ++|.+..++.+.+.++|..++.... +.+.         +..||.+.|.+.++.
T Consensus        42 lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~-~~i~---------~~~~~~~~f~i~~~~  111 (372)
T PF00854_consen   42 LIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLV-PYIQ---------QNYGWFLGFGIPAIG  111 (372)
T ss_dssp             HHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCC-CHHH---------HCS-HHHHHHHHHHH
T ss_pred             HHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccc-hhhc---------cccchhhhhhHHHHH
Confidence            567888888888889999988643  3456788889999999988765442 2221         357899988887666


Q ss_pred             HHHHHHHHH
Q 018940          213 GCCFVGIFL  221 (348)
Q Consensus       213 ~~~~~ll~~  221 (348)
                      .++..+..+
T Consensus       112 ~~~~~~~f~  120 (372)
T PF00854_consen  112 MLLALIVFL  120 (372)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555544443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=94.17  E-value=0.13  Score=49.64  Aligned_cols=138  Identities=13%  Similarity=-0.039  Sum_probs=76.9

Q ss_pred             hhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q 018940           75 ATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCI  154 (348)
Q Consensus        75 ~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~  154 (348)
                      +.++...++|+.|||+. .+.|...+.+....+-.   |+.  +..+....++.|.+..++.++|=+   .......+|.
T Consensus       364 Gyw~tv~~id~iGRk~i-q~~GF~~~~i~~~~~~~---~y~--~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~  434 (538)
T KOG0252|consen  364 GYWFTVYFIDIIGRKYI-QLMGFFIMTIFFFVIAG---PYN--QLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEI  434 (538)
T ss_pred             ceeEEEEEeehhhhHHH-HHhhHHHHHHHHHHHcC---Ccc--cccccCceeehHHHHHHHHhcCCC---ceeEEeehhh
Confidence            66778889999999876 45677777766654432   321  111222233444432222222110   1112234565


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018940          155 TLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (348)
Q Consensus       155 ~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~  228 (348)
                      .| .+-|+..-++..+.+-.|++++.....++..-  .+   ....+.++.+++.+...++..+..+ ++||.+
T Consensus       435 FP-arvR~t~hGIsAA~GK~GAivg~~~F~~~t~~--~y---p~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk  501 (538)
T KOG0252|consen  435 FP-ARVRSTCHGISAASGKAGAIVGAFGFLYLTDH--NY---PPNIGVRNVFIILAGCMLLGILFTL-LIPETK  501 (538)
T ss_pred             ch-HHHhhhhhhHHHHhccchHHHHHHHhhHhhhc--cC---CccccchHHHHHHHHHHHHhHheeE-Eeeccc
Confidence            54 45677777777777777777766554444320  01   1245788899888777776666554 556753

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=93.80  E-value=3.1  Score=42.14  Aligned_cols=126  Identities=15%  Similarity=0.172  Sum_probs=72.4

Q ss_pred             HHHHHHHHhh-CCCh---hHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcc
Q 018940           45 TYLLLFLTDI-GLSP---RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (348)
Q Consensus        45 ~~l~~~~~~~-g~s~---~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~  120 (348)
                      .+.|.....+ +-+.   ...+++.....+...++..+.|.+.-+.||-|..++.+.+.+.+.+-.+.. .-|     .+
T Consensus       331 ~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~-~~~-----~n  404 (599)
T PF06609_consen  331 ILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAA-VRP-----DN  404 (599)
T ss_pred             HHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH-ccC-----CC
Confidence            3444444443 4443   356778778888888888999999988888776666776666554433322 112     12


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Q 018940          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (348)
Q Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~  182 (348)
                      ... . +.+.   .+.+++.+....+......-..+ +++-+.++++......+|+.++..+
T Consensus       405 ~~~-~-i~~~---~l~g~giG~~~~~~~~~~ql~~p-~~~ig~a~gL~~s~R~~GGsIg~aI  460 (599)
T PF06609_consen  405 KNA-A-IAFL---VLAGFGIGGILVPAIVIAQLIVP-DEDIGTATGLTGSIRSIGGSIGYAI  460 (599)
T ss_pred             cch-H-HHHH---HHHHHhHHHHHHHHHHeeEeeeC-chHHHHHHHHHHHHHHHhhHHHHHH
Confidence            211 1 2232   25667777777776665555444 4566766655444444444444433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=93.38  E-value=0.76  Score=46.47  Aligned_cols=67  Identities=4%  Similarity=0.016  Sum_probs=46.9

Q ss_pred             HhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          267 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       267 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      +....+.+ .+++++|++..+.+....+....+ ...+..|++ ||+|+|  +++.+|.+++.+++++..+.
T Consensus        44 y~fsv~s~-~L~~~lgls~~~l~~i~svg~~~g-~~~lp~G~L~Dr~G~R--~vllig~ll~~iG~ll~ala  111 (591)
T PTZ00207         44 YAFNLISG-AMQARYNLTQRDLSTITTVGIAVG-YFLLPYSFIYDYLGPR--PIFVLSMTVFCLGTLLFALT  111 (591)
T ss_pred             HHHHHHHH-HHHHHhCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHH
Confidence            34444444 578888998876665444322222 234456887 999999  99999999999999887775

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=93.32  E-value=0.82  Score=33.57  Aligned_cols=67  Identities=16%  Similarity=0.223  Sum_probs=49.6

Q ss_pred             hhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       268 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      .....+|. .+++.+++.++.+.+....+++-++|++....+ ++..++  +.+..++++.++.++.+.+.
T Consensus        10 ayTplLP~-M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   10 AYTPLLPL-MQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR--RLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHhHhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHH
Confidence            33445554 566679998888888888888889999888877 554555  78888888888887666554

Note that many members are hypothetical proteins.

>TIGR00806 rfc RFC reduced folate carrier

Probab=93.11  E-value=0.88  Score=44.68  Aligned_cols=67  Identities=7%  Similarity=0.141  Sum_probs=53.8

Q ss_pred             hhHHHHHHHhhcccccchh-hhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          269 SQAYLAFYVINDLRMGQSA-KALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       269 ~~~~~~~yl~~~~~~~~~~-~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      ..++...|+.+++|++.++ .+.+......+-.+.-+.++++ ||+|-|  +++..+++.+.+..+++.+.
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K--~vL~l~~l~Wsl~t~L~~fa  112 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK--PVLVLQALSFVCVWLLLLLG  112 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHHHHHHHHHH
Confidence            3445666888899999887 6655555566777788888888 999999  99999999999998888775

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=92.59  E-value=9.9  Score=36.97  Aligned_cols=130  Identities=15%  Similarity=0.073  Sum_probs=82.9

Q ss_pred             HHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHH---HHHHhcCcCCCcccCccc
Q 018940           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS---FSSVFGGCMPCRILSTST  121 (348)
Q Consensus        45 ~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~---~~~l~~~~~~~~~~~~~~  121 (348)
                      ..+..|+...|+|+.++|..-+.+.+....+.....++.+|.|..|.= +++...-...   ....++  .|.   ...+
T Consensus       279 ~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G-~~~l~~q~~~L~~~v~~~~--~~~---~~~~  352 (432)
T PF06963_consen  279 GLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAG-LWSLWWQWVCLALCVVSFW--APG---SPFS  352 (432)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH-HHHHHHHHHHHHHHHHHHh--cCC---CCch
Confidence            344567766799999999999999999999999999999999987653 2343221111   111221  231   0001


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Q 018940          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (348)
Q Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~  182 (348)
                      .... ..+.....+.-+|.-+++....-++.|.. +++||+..++..++.+++--++...+
T Consensus       353 ~~s~-~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V-~~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  353 SISA-YLLLGGIALSRIGLWSFDLAVTQIMQENV-PESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             hhHH-HHHHHHHHHHHHHHHhhhHHHHHhhcccC-CHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            1111 11111112233666677777777888876 46899999999998888877765443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=92.33  E-value=5.4  Score=40.31  Aligned_cols=188  Identities=11%  Similarity=0.056  Sum_probs=96.8

Q ss_pred             chHhhHHhhhhhH-HHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcc-cCCchHHHHHHHHH
Q 018940           23 RWSVLYYGSGHML-NDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVL   99 (348)
Q Consensus        23 ~~~~~~~~~g~~~-~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~i~~~~~~   99 (348)
                      .|+...|.+++-. -..+......-+..|+++. +.+...+.-......-..-+.....+.++|- +||-+.. ..+..+
T Consensus        35 ~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI-~~~s~i  113 (571)
T KOG1237|consen   35 GWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTI-NIGSLI  113 (571)
T ss_pred             hhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHH-HHHHHH
Confidence            3445666666433 2222223345566788876 8887878777777777777788899999996 6988775 445555


Q ss_pred             HHHHHHHHh-cCcCCCcc---------c---CcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccc--Ccccc-h-
Q 018940          100 VAVSFSSVF-GGCMPCRI---------L---STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITL--NSTSR-V-  162 (348)
Q Consensus       100 ~~i~~~~l~-~~~~~~~~---------~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~R-~-  162 (348)
                      ..++..++- ....|...         .   +..+.....+.|.-+ ....+|.+.......+.-+|-..  +++++ . 
T Consensus       114 ~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l-~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~  192 (571)
T KOG1237|consen  114 SLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGAL-YLIALGAGGIRPCLLAFGADQFDELDPVEVKGI  192 (571)
T ss_pred             HHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHH-HHheeccCCCCCcchhhcccccCccCcchhhCc
Confidence            444432211 00011000         0   000111111222211 12334455555555566666553  12222 2 


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 018940          163 -VLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS  222 (348)
Q Consensus       163 -~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~  222 (348)
                       +...|.+...++|..++..+. ...         ++..+|.+-+-+..+...+..++++.
T Consensus       193 ~~fFnW~yf~~~~g~l~a~t~~-vyi---------q~~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  193 PSFFNWFYFSQNGGALLAQTVL-VYI---------QDNVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             ccchhHHHHHHHHHHHHHHHHH-Hhh---------hhcccceeeccHHHHHHHHHHHHHHc
Confidence             456778777777776654331 111         12456766666555544444444433

>PRK03612 spermidine synthase; Provisional

Probab=92.02  E-value=14  Score=36.86  Aligned_cols=37  Identities=16%  Similarity=0.056  Sum_probs=30.2

Q ss_pred             HHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhc
Q 018940           48 LLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID   84 (348)
Q Consensus        48 ~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~D   84 (348)
                      .-.+..+ |-+..+.+.+++++-...++++.+.|++.+
T Consensus        38 ~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~   75 (521)
T PRK03612         38 GTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLR   75 (521)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3444444 899999999999999999999999888874

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=90.72  E-value=0.88  Score=43.96  Aligned_cols=49  Identities=16%  Similarity=0.065  Sum_probs=37.6

Q ss_pred             CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHH
Q 018940           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (348)
Q Consensus        55 g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~  103 (348)
                      |.++...|.+....-+..++++.+.|.+.||.++.|..++.-.....++
T Consensus       297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG  345 (480)
T ss_pred             cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence            7777888999999999999999999999999887665444443333333

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=90.29  E-value=20  Score=35.44  Aligned_cols=136  Identities=9%  Similarity=-0.102  Sum_probs=68.9

Q ss_pred             HHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 018940           71 ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSM  150 (348)
Q Consensus        71 ~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  150 (348)
                      .........+...||+|||.+.. .+.....+++.....  .+.    ........+...    +...+.+.........
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~~-~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  430 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPLF-LSLFLAGIGLLLFGW--LPD----DLGGWLHWILPL----LGKFFIGSAFNLIFLY  430 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHHH-HHHHHHHHHHHHHHH--hhc----cchhHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            44445556689999999987764 455555555543321  221    111001111111    1112222222223455


Q ss_pred             hhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 018940          151 VNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (348)
Q Consensus       151 ~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~  229 (348)
                      .+|+.|+ .-|..+.+.......+|+++++.+.......         .....  ..+++..+.+...+...++||++.
T Consensus       431 ~~el~pt-~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~---------~~~~~--~~~~~~~~~l~~~~~~~~lpet~~  497 (521)
T KOG0255|consen  431 SAELIPT-VVRNTAVGAISAAARLGSILAPLFPLLLRQM---------FPLLG--LILFGWLALLLGLLSLLLLPETKG  497 (521)
T ss_pred             HHhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------cccch--HHHHHHHHHHHHHHHHhcCcccCC
Confidence            6677753 4688887777777777777765542111110         01111  112455666666777788999654

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=89.62  E-value=7.4  Score=37.83  Aligned_cols=161  Identities=8%  Similarity=-0.010  Sum_probs=86.7

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCc--ccchhHHHHHHHHH
Q 018940           56 LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST--STLKVETISYCVFA  133 (348)
Q Consensus        56 ~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~--~~~~~~~~~~~l~~  133 (348)
                      .|+...|.+..++.+...++..+..+.-=++.-|+.+. ...+..++....-.. .+. .+...  .+..+..+.-.   
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~-~t~~~~~~~~l~~~~-lv~-~~n~~~Gi~d~~f~lgd~---  325 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFV-VTTLVSVLASLFDLL-LVT-RWNLDLGIPDQWFALGDT---  325 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHhcccEE-EEE-EEeeeeCcCCeEEEEEhH---
Confidence            88888999888888888887777766555555455543 333333322211000 000 00000  00000001111   


Q ss_pred             HHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHH
Q 018940          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG  213 (348)
Q Consensus       134 ~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~  213 (348)
                      .+..+.......|...+++++.| +...+...++.....++|..++..++..+...++..+  ++-.+-.+..+++.+..
T Consensus       326 ~l~~~~~~i~~mP~lvl~a~lcP-~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~--~~f~~l~~lili~~~~~  402 (433)
T PF03092_consen  326 ILEEVIGMIAFMPSLVLAARLCP-KGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTR--DDFSNLWLLILICSVIQ  402 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--ccccchHHHHHHHHHHH
Confidence            23445555667788888999886 4566777788778888888887777666666555321  12223344455555555


Q ss_pred             HHHHHHHHhhccc
Q 018940          214 CCFVGIFLSRTEE  226 (348)
Q Consensus       214 ~~~~ll~~~~~~e  226 (348)
                      ++. +....++|+
T Consensus       403 ll~-l~ll~lLp~  414 (433)
T PF03092_consen  403 LLP-LPLLFLLPP  414 (433)
T ss_pred             HHH-HHHHHHcCC
Confidence            333 333445554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=89.14  E-value=22  Score=34.19  Aligned_cols=51  Identities=14%  Similarity=0.025  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-CCCh--hHHHHHHHHHHHHHHhhhhhhHhhhcc
Q 018940           35 LNDITAACWFTYLLLFLTDI-GLSP--RGAAAVMLSGQIADGFATIFIGELIDR   85 (348)
Q Consensus        35 ~~~~~~~~~~~~l~~~~~~~-g~s~--~~~g~i~~~~~i~~~i~~p~~G~l~Dr   85 (348)
                      +.-..+..+.+--++|+.+. +-++  .--......+.+...+....--++.-|
T Consensus        29 G~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~   82 (406)
T KOG1479|consen   29 GTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTR   82 (406)
T ss_pred             ccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666667777776 5444  223444555566666666666677766

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=88.71  E-value=21  Score=33.42  Aligned_cols=60  Identities=17%  Similarity=0.257  Sum_probs=35.0

Q ss_pred             HHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhHhhccC
Q 018940          276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPM  339 (348)
Q Consensus       276 yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~~~~~~  339 (348)
                      |+....|++.  .+....+.++...+.+.+.+.+ +++||.  .....|.+.--.-...+++-++
T Consensus       302 ~V~c~~Gv~~--igf~m~cfgv~~Av~S~~~g~L~~~~gr~--~~~v~gavv~l~li~~~~~w~~  362 (390)
T KOG3097|consen  302 YVACALGVSR--IGFAMACFGVGDAVASSLFGLLGKWIGRP--PLLVLGAVVHLLLITILFFWAP  362 (390)
T ss_pred             hhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCc--cHHHHHHHHHHHHHHHHHhccc
Confidence            3444444443  4445455666656666566665 999999  7777776654444444444433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=88.42  E-value=24  Score=33.98  Aligned_cols=51  Identities=8%  Similarity=-0.091  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (348)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~  186 (348)
                      ..|+..|+.++.....+.+-. +++||....+....+...|..+++.++.++
T Consensus       344 ~eGLlGGa~YVNtF~~I~~~~-~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  344 YEGLLGGASYVNTFYRISEEV-PPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            455555666666666666655 468899999988888888888877765443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=86.69  E-value=34  Score=33.69  Aligned_cols=210  Identities=10%  Similarity=0.011  Sum_probs=101.1

Q ss_pred             CCChhHHHHHHHHHHH-HHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcC-cCCCccc--Cc---------cc
Q 018940           55 GLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG-CMPCRIL--ST---------ST  121 (348)
Q Consensus        55 g~s~~~~g~i~~~~~i-~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~-~~~~~~~--~~---------~~  121 (348)
                      ..++..+..+=...-+ +..+..++.+.++++.-|+|.+-...  ....+++.+|.. ..|+.-.  ++         ..
T Consensus        57 ~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~--~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~  134 (509)
T COG3202          57 RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIIL--GFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADL  134 (509)
T ss_pred             cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHH--HHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhC
Confidence            4567777777766666 66778899999999998877764322  112222222210 0132000  00         00


Q ss_pred             c-h--hHH-----HHHHHHHHHHHHHHH-HHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 018940          122 L-K--VET-----ISYCVFAAIFNVGWA-ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA  192 (348)
Q Consensus       122 ~-~--~~~-----~~~~l~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~  192 (348)
                      + .  +.+     ..+.+..+...+-.+ ..+.-+...+.|++. .+|-.|..+..+.+.+++..+++.+...+......
T Consensus       135 p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt-~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~  213 (509)
T COG3202         135 PMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT-IEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDA  213 (509)
T ss_pred             CccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence            0 0  000     112211112222111 122235667778774 45667888888888888877766554333210000


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHHHhhccc---ccc---c---c--cccCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 018940          193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE---PRL---K---M--GLRGNSHARISWAYWFKKILYYQVALVYML  261 (348)
Q Consensus       193 ~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e---~~~---~---~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  261 (348)
                      ..........+..+.+.++.++++..+-.+.=++   ++.   .   +  .++.+.+..++++.+.|.|.++.+.+...+
T Consensus       214 ~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~  293 (509)
T COG3202         214 LASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKKKKLKLGLIESFKMILRSKYLGAIALLVLA  293 (509)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcccccccccCcHHHHHHHHHhhhHHHHHHHHHHH
Confidence            0000011234555555544444444333222111   111   0   0  011233456788888999998877666555


Q ss_pred             HHHHHH
Q 018940          262 TRLVVN  267 (348)
Q Consensus       262 ~~~~~~  267 (348)
                      .....+
T Consensus       294 Y~v~in  299 (509)
T COG3202         294 YGVSIN  299 (509)
T ss_pred             HHHHHH
Confidence            544443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=86.47  E-value=21  Score=35.03  Aligned_cols=119  Identities=7%  Similarity=-0.041  Sum_probs=76.9

Q ss_pred             hCCChhHHHHHHHHHHHHHHhhhhhhH-hhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHH
Q 018940           54 IGLSPRGAAAVMLSGQIADGFATIFIG-ELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVF  132 (348)
Q Consensus        54 ~g~s~~~~g~i~~~~~i~~~i~~p~~G-~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  132 (348)
                      +|.+..+.+...+...+...+.+.+.. .+.-+.|-|+ .+..|...-.+.......   .      ...+..+...   
T Consensus       272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~-~i~lGl~~~~~~~~~~af---~------~~~w~~~~~~---  338 (463)
T KOG2816|consen  272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR-LISLGLLSEFLQLLLFAF---A------TETWMMFAAG---  338 (463)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HhhHHHHHHHHHHHHHHH---h------ccchhhhHHH---
Confidence            399999999999999999999998888 5665678777 455565555454432211   1      1222121111   


Q ss_pred             HHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (348)
Q Consensus       133 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~  188 (348)
                        ..........+...+.++.+. ++|||+++.++........+.+++.+-..+..
T Consensus       339 --v~~~~~~~~~pa~~s~~s~~v-~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  339 --VVVALAGIVFPAIRAFASILV-SPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             --HHHHhhcchhHHHHhHHHhhc-ccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence              222223344445566666666 57899999999988888888887777656554

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.48  E-value=39  Score=33.18  Aligned_cols=116  Identities=14%  Similarity=0.120  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhHhhhcc---cCCchHHHHHHHHHHHHHHHHHhcCcCCCcc--cCcc--cch--hHHHHHHH
Q 018940           61 AAAVMLSGQIADGFATIFIGELIDR---FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI--LSTS--TLK--VETISYCV  131 (348)
Q Consensus        61 ~g~i~~~~~i~~~i~~p~~G~l~Dr---~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~--~~~~--~~~--~~~~~~~l  131 (348)
                      .+.-.....+...++..+++.+++|   +||++. +..+.++..+...+... ..|...  .++.  +..  .-.....+
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~-~~~~~~~~~~~~~li~l-~~p~dap~~~t~~~~~~~~~~~~~~~i  358 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPT-VLIGIIIHLIGFLLIHL-SFPNDAPLRPTDSPPLLFTPSYYLALI  358 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcc-hhHHHHHHHHHHHHHhc-cccccCCCCCCcccccccccchhHHHH
Confidence            3444445556666667777777775   788655 55666666666544432 234211  0000  000  00111222


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHH
Q 018940          132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (348)
Q Consensus       132 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~  180 (348)
                      +..+.|++-++.+.-.+..++...  ++||..+.++...-..++..++.
T Consensus       359 i~~l~G~~D~~~~t~~~~ii~~~~--~~~~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  359 IGFLLGFGDACFNTQRYVIIALLY--PDDRAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHh
Confidence            334677888888887777887766  46787777766656566655533

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=84.61  E-value=0.42  Score=46.13  Aligned_cols=83  Identities=16%  Similarity=0.120  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-----HHhhhhhhHHHHHHHHHH
Q 018940          253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-----AWTGQRLKAYYSAGGVLW  327 (348)
Q Consensus       253 ~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-----~r~g~r~k~~~~~g~~l~  327 (348)
                      ..+....+-.++++..-..|.+.|+++. |.+.+..++...+.-+.+++.-++.|..     .|+||| |+.+..+....
T Consensus        35 i~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR-RPfI~~~s~~i  112 (498)
T KOG0637|consen   35 ISVASIAAGVQFGWALELSYLTPYLQSL-GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR-RPFILAGSLLI  112 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHc-CCCcccccccccccccccceecccccccccccccccccc-cchHHHhhHHH
Confidence            3344445555778888888999999874 8877766665555445555555555543     468888 55666666666


Q ss_pred             HHHHHhHhhc
Q 018940          328 VFCGAGILIL  337 (348)
Q Consensus       328 ~v~~~~~~~~  337 (348)
                      .++..++.++
T Consensus       113 ~~~l~Lig~a  122 (498)
T KOG0637|consen  113 AVSLFLIGYA  122 (498)
T ss_pred             HHHHhhhhhH
Confidence            6766655443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=84.28  E-value=2.7  Score=40.86  Aligned_cols=58  Identities=14%  Similarity=0.201  Sum_probs=46.2

Q ss_pred             HHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhH
Q 018940          275 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI  334 (348)
Q Consensus       275 ~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~  334 (348)
                      +=+++..|++.++.+++..+..+.-.+.+++.+.+ ||+.|+  .++.+|..+|+.+.++-
T Consensus        57 ~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~--~v~~vG~~iW~~Av~~~  115 (493)
T KOG1330|consen   57 KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK--RVIAVGIFIWTLAVFAS  115 (493)
T ss_pred             HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc--eEEeeHHHHHHHHHHHH
Confidence            34677788888777777777777778888999998 999999  88889988888776543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=83.84  E-value=2.9  Score=42.92  Aligned_cols=70  Identities=13%  Similarity=0.175  Sum_probs=47.7

Q ss_pred             HHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHhHhhc
Q 018940          266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM--AWTGQRLKAYYSAGGVLWVFCGAGILIL  337 (348)
Q Consensus       266 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l--~r~g~r~k~~~~~g~~l~~v~~~~~~~~  337 (348)
                      ++++.+-+..|+.+.+|++...+..+........-+.+++++++  +++|++  +++..+.++..+|.+++.+.
T Consensus         3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~--~tIl~~~ii~~lG~~llai~   74 (654)
T TIGR00926         3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKF--KTILYLSIVYVVGHALLSFG   74 (654)
T ss_pred             eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHhc
Confidence            45667778888888888876543322222222334445556665  679999  99999999999998777664

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=83.39  E-value=42  Score=31.84  Aligned_cols=46  Identities=15%  Similarity=0.114  Sum_probs=29.9

Q ss_pred             HHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          141 AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (348)
Q Consensus       141 ~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~  187 (348)
                      ++..+++.+.+-+.. +|+++-++.+...+..-.|-..++..+..++
T Consensus       109 tAaEIAYysYIYs~V-d~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLv  154 (433)
T KOG3810|consen  109 TAAEIAYYSYIYSKV-DPEMYKRVTGYCRAAFLVGKFVGSVLAQLLV  154 (433)
T ss_pred             HHHHHhhhheeeeec-CHHHHHHHHHHhHHHHHHHhHHHhHHHHHHh
Confidence            355667777776655 5677778877766666667676666554444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=82.18  E-value=5.2  Score=38.13  Aligned_cols=49  Identities=14%  Similarity=-0.025  Sum_probs=37.7

Q ss_pred             cchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhH
Q 018940          284 GQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI  334 (348)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~  334 (348)
                      +....+++....++.-++.++..|.+ ||+|||  .++.+|+...++.++.+
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRk--pvll~c~~~va~s~ll~  115 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRK--PVLLACLIGVALSYLLW  115 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCch--HHHHHHHHHHHHHHHHH
Confidence            33455666676777888999888888 999999  98888888777765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.95
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.93
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.87
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.82
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.75
2xut_A	524	Proton/peptide symporter family protein; transport	99.67
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.27
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.06
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.95
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.88
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.85
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.18
2xut_A	524	Proton/peptide symporter family protein; transport	98.15

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.95  E-value=4.7e-25  Score=210.86  Aligned_cols=302  Identities=11%  Similarity=-0.039  Sum_probs=215.6

Q ss_pred             chHhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHH
Q 018940           23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV  102 (348)
Q Consensus        23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i  102 (348)
                      .+......+..+..........+++|.+.++.|+|+.+.|++.++..+..++++|+.|+++||+||||.+ +.+....++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l-~~~~~~~~~  103 (438)
T 3o7q_A           25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI-ITGLFLYAL  103 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH-HHHHHHHHH
Confidence            3444444555555555556667777777667799999999999999999999999999999999999885 467777777


Q ss_pred             HHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Q 018940          103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (348)
Q Consensus       103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~  182 (348)
                      +....+.  .+    ...+.+...+.+    .+.|++.+...++..++++|..+ +|+|++..++.+.+..+|..+++.+
T Consensus       104 ~~~~~~~--~~----~~~~~~~l~~~~----~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~  172 (438)
T 3o7q_A          104 GAALFWP--AA----EIMNYTLFLVGL----FIIAAGLGCLETAANPFVTVLGP-ESSGHFRLNLAQTFNSFGAIIAVVF  172 (438)
T ss_dssp             HHHHHHH--HH----HTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh--cc----ccccHHHHHHHH----HHHHhhHHHhhhhHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7654411  00    012333332222    46788888888888999999985 6789999999999999999988777


Q ss_pred             HHHHHHhccCC-c---------------ccchhhHHHHHHHHHHHHHHHHHHHHHhh-cccccccc-cccCCchhHHHHH
Q 018940          183 AFIVFSVSTAK-T---------------HADLENQYRWIAYSSIFIGCCFVGIFLSR-TEEPRLKM-GLRGNSHARISWA  244 (348)
Q Consensus       183 ~~~~~~~~~~~-~---------------~~~~~~g~~~~~~i~~~i~~~~~ll~~~~-~~e~~~~~-~~~~~~~~~~~~~  244 (348)
                      .+.+.....+. +               ..+...+||+.+++.+++..+..++.++. .||++.++ +++++++.++.++
T Consensus       173 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  252 (438)
T 3o7q_A          173 GQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLS  252 (438)
T ss_dssp             TTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHH
T ss_pred             HHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHH
Confidence            65555221110 0               00011238999877766665555444332 34433222 1223344556788


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHH
Q 018940          245 YWFKKILYYQVALVYMLTRLVVNVSQAYLAFY-VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSA  322 (348)
Q Consensus       245 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y-l~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~  322 (348)
                      +++|||.++...+..++..........|+|.| +++..|.+..+.+....+..++.+++.++.+++ ||+|+|  +.+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~--~~~~~  330 (438)
T 3o7q_A          253 RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH--KVLAA  330 (438)
T ss_dssp             HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH--HHHHH
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHH
Confidence            89999998888877777777788888999999 888889988777777677778889999999998 999999  88888


Q ss_pred             HHHHHHHHHHhHhhcc
Q 018940          323 GGVLWVFCGAGILILP  338 (348)
Q Consensus       323 g~~l~~v~~~~~~~~~  338 (348)
                      +.++.+++.+...+.+
T Consensus       331 ~~~~~~~~~~~~~~~~  346 (438)
T 3o7q_A          331 YALIAMALCLISAFAG  346 (438)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            8888888877666654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.93  E-value=7.9e-25  Score=209.88  Aligned_cols=288  Identities=13%  Similarity=0.021  Sum_probs=208.9

Q ss_pred             hHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHH
Q 018940           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (348)
Q Consensus        27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~  106 (348)
                      ....++.+..........++++.+.++. .|+.+.|++.++..+...++++++|+++||+||||.+ +.+.+..+++...
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l-~~~~~~~~~~~~~  108 (451)
T 1pw4_A           31 LGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL-PAGLILAAAVMLF  108 (451)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH-HHHHHHHHHHHHH
Confidence            3444455555555555667788888889 9999999999999999999999999999999998875 5677777776654


Q ss_pred             HhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (348)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~  186 (348)
                      ...  .+..   ..+.....+.+    .+.|++.+...++..++++|..+ +++|++..++.+.+..+|..+++.+++.+
T Consensus       109 ~~~--~~~~---~~~~~~l~~~~----~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A          109 MGF--VPWA---TSSIAVMFVLL----FLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             HHH--CHHH---HSSSSHHHHHH----HHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHh--hhhc---cccHHHHHHHH----HHHHHHhhhccchHHHHHHHHCC-chhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            321  1100   11333232322    36778888888888999999985 57899999999999999988877666554


Q ss_pred             HHhccCCcccchhhH-HHHHHHHHHHHHHHHHHHHHhhccccccccc----cc--C------------CchhHH-HHHHH
Q 018940          187 FSVSTAKTHADLENQ-YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----LR--G------------NSHARI-SWAYW  246 (348)
Q Consensus       187 ~~~~~~~~~~~~~~g-~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~----~~--~------------~~~~~~-~~~~~  246 (348)
                      ..          ..+ ||+.+++.+++.++..++.++..||++.+.+    ++  +            +.+.++ ..++.
T Consensus       179 ~~----------~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (451)
T 1pw4_A          179 MA----------WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYV  248 (451)
T ss_dssp             HH----------HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHT
T ss_pred             HH----------HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHH
Confidence            42          345 9999988888887777777777887543211    00  0            001111 14567


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHh--hhhhhHHHHHH
Q 018940          247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWT--GQRLKAYYSAG  323 (348)
Q Consensus       247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~--g~r~k~~~~~g  323 (348)
                      +|||.++...+..++..........|+|.|+++..|.+..+.+.......++.+++.++.+++ ||+  |+|  +.+..+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--~~~~~~  326 (451)
T 1pw4_A          249 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--GATGVF  326 (451)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--HHHHHH
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHH
Confidence            788998888888777778888899999999999899988777777777778889999999998 999  888  777777


Q ss_pred             HHHHH-HHHHhHhhcc
Q 018940          324 GVLWV-FCGAGILILP  338 (348)
Q Consensus       324 ~~l~~-v~~~~~~~~~  338 (348)
                      ..+.. ++.+.+.+.+
T Consensus       327 ~~~~~~~~~~~~~~~~  342 (451)
T 1pw4_A          327 FMTLVTIATIVYWMNP  342 (451)
T ss_dssp             HHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            66655 6665555544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=6.5e-23  Score=192.40  Aligned_cols=259  Identities=12%  Similarity=0.030  Sum_probs=189.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhc
Q 018940           30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG  109 (348)
Q Consensus        30 ~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~  109 (348)
                      .+..+..........+.++.+.++.|.|+.+.|++.+...+...+++|+.|+++||+||||.++ .+....+++......
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~   84 (375)
T 2gfp_A            6 VLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL-VGMSIFMLATLVAVT   84 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH-HHHHHHHHHHHHHHH
Confidence            3445555556666677788777777999999999999999999999999999999999999865 566666666543321


Q ss_pred             CcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018940          110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~  189 (348)
                        .       .+.....+    ...+.+++.+...+...+++.|..+ +|+|++..+..+.+..+|..+++.+.+.    
T Consensus        85 --~-------~~~~~l~~----~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~----  146 (375)
T 2gfp_A           85 --T-------SSLTVLIA----ASAMQGMGTGVGGVMARTLPRDLYE-RTQLRHANSLLNMGILVSPLLAPLIGGL----  146 (375)
T ss_dssp             --H-------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-TSSCCSHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             --h-------ccHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHhhHHHHHH----
Confidence              1       12222222    2236778888888888899999885 5789999999988888887776544322    


Q ss_pred             ccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 018940          190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (348)
Q Consensus       190 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  269 (348)
                      +.      +..+||+.+.+.+++..+..++..+..||++.++++  +++.++.+++.+|||+++...+..++........
T Consensus       147 l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T 2gfp_A          147 LD------TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP--RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAF  218 (375)
T ss_dssp             SS------CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC--CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH------HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc--cccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence            22      246899999988887777766566677875433221  1223345677899999888877777777888888


Q ss_pred             hHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhh
Q 018940          270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQR  315 (348)
Q Consensus       270 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r  315 (348)
                      ..++|.|+++..|.+..+.+.......++.+++.++.+++ ||.+++
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~  265 (375)
T 2gfp_A          219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL  265 (375)
T ss_dssp             HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999889888777766666667777787777776 776654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.87  E-value=1.9e-19  Score=174.75  Aligned_cols=287  Identities=9%  Similarity=-0.068  Sum_probs=182.5

Q ss_pred             HhhHHhhhhhHHHHHHHHHHHHHHHHHHh------hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcc-cCCchHHHHHHH
Q 018940           25 SVLYYGSGHMLNDITAACWFTYLLLFLTD------IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGS   97 (348)
Q Consensus        25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~------~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~i~~~~   97 (348)
                      ......+..+..........++++.|+++      .|.|..+.|++.++..+...+++++.|+++|| +||||.+ ..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~-~~~~   92 (491)
T 4aps_A           14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV-FWGG   92 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH-HHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH-HHHH
Confidence            33444455556666666667888888876      69999999999999999999999999999999 8999885 4677


Q ss_pred             HHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCccc--chhHHHHHHHHHHHH
Q 018940           98 VLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS--RVVLTSCRNAFTMVA  175 (348)
Q Consensus        98 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--R~~~~~~~~~~~~ig  175 (348)
                      +..+++......   .      .+.....+.+    .+.+++.+...++..++++|..+ +++  |+...+..+.+.++|
T Consensus        93 ~~~~~~~~~~~~---~------~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~g  158 (491)
T 4aps_A           93 VLIMLGHIVLAL---P------FGASALFGSI----ILIIIGTGFLKPNVSTLVGTLYD-EHDRRRDAGFSIFVFGINLG  158 (491)
T ss_dssp             HHHHHHHHHHHS---C------CSTTHHHHHH----HHHHHHHHHHHHHHHHHHHHHSS-SCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---h------hhHHHHHHHH----HHHHHHHHhccchHHHHHHHHcC-cccccceeeehHHHHHHHHH
Confidence            777776654432   1      2333232222    36778888888888899999885 455  666777777888888


Q ss_pred             HHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccc---cccC-Cchh-HHHHHH-----
Q 018940          176 NLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---GLRG-NSHA-RISWAY-----  245 (348)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~---~~~~-~~~~-~~~~~~-----  245 (348)
                      ..+++.+.+.+.          +..||++.+++.++..++..++..+..++...++   ++++ +++. ++..+.     
T Consensus       159 ~~~~~~~~~~l~----------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  228 (491)
T 4aps_A          159 AFIAPLIVGAAQ----------EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAV  228 (491)
T ss_dssp             HHHHHHHHHHHH----------HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHH----------hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHH
Confidence            887766654443          2457999998876666655555444433321111   1110 1111 110000     


Q ss_pred             ------------------------------------------------HHHhH--HHHHHHHHHHHHHHHHHhhhHHHHH
Q 018940          246 ------------------------------------------------WFKKI--LYYQVALVYMLTRLVVNVSQAYLAF  275 (348)
Q Consensus       246 ------------------------------------------------~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~  275 (348)
                                                                      ..+++  ..+.+.+..++..........++|.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (491)
T 4aps_A          229 AGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLAT  308 (491)
T ss_dssp             HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHH
T ss_pred             HHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence                                                            00111  1222333444445566677788999


Q ss_pred             HHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhh---hHHHHHHHHHHHHHHHhHhh
Q 018940          276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL---KAYYSAGGVLWVFCGAGILI  336 (348)
Q Consensus       276 yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~---k~~~~~g~~l~~v~~~~~~~  336 (348)
                      |.++..+.+....+.......+..+++.++.+++ ||+|||.   .+.+..+..+.+++.+.+.+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~  373 (491)
T 4aps_A          309 FAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI  373 (491)
T ss_dssp             HHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH
T ss_pred             HHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence            9998877764444444455566777788888887 9999882   12344777777777666554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.82  E-value=5.2e-20  Score=175.86  Aligned_cols=291  Identities=12%  Similarity=0.067  Sum_probs=157.9

Q ss_pred             hHhhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHH
Q 018940           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV  102 (348)
Q Consensus        24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i  102 (348)
                      ++........+..........++++.|+++. |+|+.+.|++.++..+...+++|++|+++||+||||++++ +....++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~-~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW-IITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH-HHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHH
Confidence            3434444444444555556678999999885 9999999999999999999999999999999999998654 4333322


Q ss_pred             HHHHHh-cCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHH
Q 018940          103 SFSSVF-GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (348)
Q Consensus       103 ~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~  181 (348)
                      .....+ ....+.  . .....   ....+.....+.+++.......++.++.   +++|+...+..+....+|..+++.
T Consensus        86 ~~~~~~~~~~~~~--~-~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~g~~~~~~  156 (417)
T 2cfq_A           86 MFAPFFIFIFGPL--L-QYNIL---VGSIVGGIYLGFCFNAGAPAVEAFIEKV---SRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             CHHHHHHHTHHHH--H-HTTCC---HHHHGGGSSTTHHHHTTHHHHHHHHHHH---HHHHTCCHHHHSSSTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHH--H-HHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHh---hhhcccchHHHHHHHHHHHHHHHH
Confidence            111010 000000  0 00000   0111000011222222222222222221   123344444444444555555444


Q ss_pred             HHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccc--cc----cCCchhHHHHHHHHHhHHHHHH
Q 018940          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--GL----RGNSHARISWAYWFKKILYYQV  255 (348)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~  255 (348)
                      +.+.+.           ..+|++.+++.++..++..++.+...||++.+.  ++    ++++...+.+++++|||+++..
T Consensus       157 l~~~l~-----------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (417)
T 2cfq_A          157 IVGIMF-----------TINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFL  225 (417)
T ss_dssp             HHHHHH-----------HHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHH-----------HhchhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhH
Confidence            433332           246788887665554433333333334432111  11    1111122345678889988766


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhccccc---chhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 018940          256 ALVYMLTRLVVNVSQAYLAFYVINDLRMG---QSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG  331 (348)
Q Consensus       256 ~l~~~~~~~~~~~~~~~~~~yl~~~~~~~---~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~  331 (348)
                      .+..++....+.....++|.|+.+..+..   ....+....+..++.+++.++.+++ ||+|+|  +.+..+..+.+++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~l~~~~~~~~~~~  303 (417)
T 2cfq_A          226 SLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK--NALLLAGTIMSVRI  303 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHH
Confidence            55544444455555667888887765432   2233444444455667788888987 999999  88878877777766


Q ss_pred             HhHhhc
Q 018940          332 AGILIL  337 (348)
Q Consensus       332 ~~~~~~  337 (348)
                      +...+.
T Consensus       304 ~~~~~~  309 (417)
T 2cfq_A          304 IGSSFA  309 (417)
T ss_dssp             HHHTTC
T ss_pred             HHHHHh
Confidence            555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.75  E-value=3e-16  Score=151.99  Aligned_cols=265  Identities=13%  Similarity=0.063  Sum_probs=153.7

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCccc-----------CcccchhH
Q 018940           57 SPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL-----------STSTLKVE  125 (348)
Q Consensus        57 s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~-----------~~~~~~~~  125 (348)
                      ++.+.|++.+...+..+++++++|+++||+|||+.++ .+.+++.++......  .+....           ...+....
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~-~~~~l~~i~~i~~a~--~~~~~~~~~~~~~~~~~~a~~~~~l  129 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK-IAAVLFFISGVGSAW--PELGFTSINPDNTVPVYLAGYVPEF  129 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHHHC--TTTTTSCSSSSSSCCGGGGGCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHH--HhhhhhhhcchhHHHHHHhhhHHHH
Confidence            4567889999999999999999999999999998865 566666666543321  110000           01122222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHH
Q 018940          126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI  205 (348)
Q Consensus       126 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  205 (348)
                          .+...+.|++.+...+...++++|.+| +++|++..++.+.+...|...+..............  .....+||+.
T Consensus       130 ----~~~R~l~G~g~G~~~~~~~~~i~E~~p-~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  202 (491)
T 4gc0_A          130 ----VIYRIIGGIGVGLASMLSPMYIAELAP-AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS--WLNTDGWRYM  202 (491)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHTTSC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT--TTTTTHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhCC-HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc--cccchhhHHH
Confidence                233347788888888888889999985 688999999988888888777666544433221110  0124568877


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccc---ccc--cC-------------Cch---hHHHH---------HHHHHhHHHHHH
Q 018940          206 AYSSIFIGCCFVGIFLSRTEEPRLK---MGL--RG-------------NSH---ARISW---------AYWFKKILYYQV  255 (348)
Q Consensus       206 ~~i~~~i~~~~~ll~~~~~~e~~~~---~~~--~~-------------~~~---~~~~~---------~~~~~~~~~~~~  255 (348)
                      +.+.++..++ .++..+..||++..   +++  +.             +++   .++..         ...++.+.....
T Consensus       203 ~~~~~~~~~~-~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (491)
T 4gc0_A          203 FASECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIG  281 (491)
T ss_dssp             HHTTHHHHHH-HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHH
T ss_pred             hhhhhhhhhh-hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHH
Confidence            7666554444 44455677885421   000  00             000   00000         000111111222


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhH
Q 018940          256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI  334 (348)
Q Consensus       256 ~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~  334 (348)
                      .....+.+........++..++.+..+.+.........+..+..+++.++..++ ||+|||  +....+.....++.+.+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr--~~~~~~~~~~~~~~~~l  359 (491)
T 4gc0_A          282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK--PLQIIGALGMAIGMFSL  359 (491)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc--chhccchHHHHHHHHHH
Confidence            222333333323334445555555556655444444455567778888888887 999999  77777766666555443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.67  E-value=1.3e-15  Score=148.87  Aligned_cols=169  Identities=11%  Similarity=-0.043  Sum_probs=118.0

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhh-C------CChhHHHHHHHHHHHHHHhhhhhhHhhhccc-CCchHHHHHHHHHH
Q 018940           29 YGSGHMLNDITAACWFTYLLLFLTDI-G------LSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAGSVLV  100 (348)
Q Consensus        29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g------~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~-Grrr~~i~~~~~~~  100 (348)
                      ..+..+......+...++++.|+++. |      .|+.+.|++.++..+...+++++.|+++||+ ||||.++ .+.+..
T Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~-~~~~~~   95 (524)
T 2xut_A           17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL-WLSLIY   95 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHH
Confidence            34445555666666778889998875 8      9999999999999999999999999999999 9998864 566666


Q ss_pred             HHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHH---HHHHHHHHHH
Q 018940          101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC---RNAFTMVANL  177 (348)
Q Consensus       101 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~---~~~~~~ig~~  177 (348)
                      +++......  .+      .+.....+.    ..+.+++.+...++..++++|..+ +++|++..+.   .+...++|..
T Consensus        96 ~~~~~~~~~--~~------~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~g~~  162 (524)
T 2xut_A           96 CVGHAFLAI--FE------HSVQGFYTG----LFLIALGSGGIKPLVSSFMGDQFD-QSNKSLAQKAFDMFYFTINFGSF  162 (524)
T ss_dssp             HHHHHHHHH--TS------SCHHHHHHH----HHHHHHHHHTTHHHHHHHHHHTCS-TTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--hc------ccHHHHHHH----HHHHHHhccccchhHHHHHHHHcC-ccchHHHHHHHHHHHHHHHHHHH
Confidence            666543321  11      123322222    236778888888888899999885 5678665544   7777777777


Q ss_pred             HHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 018940          178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL  221 (348)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~  221 (348)
                      +++.+.+.+.          +..+|++.+.+.+++.++..++.+
T Consensus       163 ~g~~~~~~l~----------~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          163 FASLSMPLLL----------KNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHTSTHHH----------HTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh----------ccccHHHHHHHHHHHHHHHHHHHH
Confidence            6554433332          235799999887776665554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.27  E-value=1.4e-10  Score=110.49  Aligned_cols=175  Identities=9%  Similarity=-0.027  Sum_probs=118.7

Q ss_pred             hhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhccc--CCchHHHHHHHHHHH-
Q 018940           26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVA-  101 (348)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~--Grrr~~i~~~~~~~~-  101 (348)
                      .....+..+...........+++.|+++. |.++.+.|.+.++..+...++.++.|+++||+  |||+.++. +..... 
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~-~~~~~~~  332 (451)
T 1pw4_A          254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV-FFMTLVT  332 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHHH
Confidence            34445555555556666778899999885 99999999999999999999999999999999  98887554 444433 


Q ss_pred             HHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHH-HHHHHH
Q 018940          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLY  180 (348)
Q Consensus       102 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~i-g~~~~~  180 (348)
                      ++...+..  .+     ..+......    ...+.+.+.+.......++..+..+ +++|++..++.+....+ |..+++
T Consensus       333 ~~~~~~~~--~~-----~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~~~~~  400 (451)
T 1pw4_A          333 IATIVYWM--NP-----AGNPTVDMI----CMIVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAAS  400 (451)
T ss_dssp             HHHHHTTS--CC-----TTCHHHHHH----HHHHHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--hc-----ccCHHHHHH----HHHHHHHHHhchHHHHHHHHHHHhc-hhhhhhHHHHHHHHHHHHHHHHHH
Confidence            44433221  11     112221111    1124555555656666778888874 57899999999988888 888877


Q ss_pred             HHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 018940          181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR  223 (348)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~  223 (348)
                      .+.+.+.+          ..||+..+++.+++.++..++.+..
T Consensus       401 ~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          401 AIVGYTVD----------FFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHH----------SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----------hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            76655543          2357777777766666655555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.06  E-value=5.6e-09  Score=99.11  Aligned_cols=162  Identities=11%  Similarity=0.040  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHhh-C---CChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCccc
Q 018940           42 CWFTYLLLFLTDI-G---LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (348)
Q Consensus        42 ~~~~~l~~~~~~~-g---~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~  117 (348)
                      .....+|.|+++. +   .+..+.|.+.++..+...++.++.|+++||+||||.++ .+....++....+..  .     
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~-~~~~~~~~~~~~~~~--~-----  309 (417)
T 2cfq_A          238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL-LAGTIMSVRIIGSSF--A-----  309 (417)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHTT--C-----
T ss_pred             HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH-HHHHHHHHHHHHHHH--h-----
Confidence            3334567777664 4   33556788888888888999999999999999988754 455555555432211  1     


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCccc
Q 018940          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAFIVFSVSTAKTHA  196 (348)
Q Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~-~~~~~~ig~~~~~~~~~~~~~~~~~~~~~  196 (348)
                        .+.....+.    ..+.+.+.+....+..++.+|..| ++.|+...+. .+....+|+.+++.+.+.+.+        
T Consensus       310 --~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~--------  374 (417)
T 2cfq_A          310 --TSALEVVIL----KTLHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE--------  374 (417)
T ss_dssp             --CSHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH--------
T ss_pred             --ccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH--------
Confidence              122211111    113344455555556678888874 5678887776 355666777766655544432        


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018940          197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (348)
Q Consensus       197 ~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~  228 (348)
                        ..|++..+.+.+++.++..++.+...||++
T Consensus       375 --~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          375 --SIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             --HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             --hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence              346777777777777777766666667644

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.95  E-value=3.1e-08  Score=93.82  Aligned_cols=141  Identities=12%  Similarity=-0.011  Sum_probs=92.9

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHH-HHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHH
Q 018940           29 YGSGHMLNDITAACWFTYLLLF-LTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (348)
Q Consensus        29 ~~~g~~~~~~~~~~~~~~l~~~-~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~  106 (348)
                      ..+..+...........+++.| +++. |.++.+.|.+.++..+...++.++.|+++||+||||.+. .+....++....
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~-~~~~~~~~~~~~  341 (438)
T 3o7q_A          263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLA-AYALIAMALCLI  341 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHH
Confidence            3344444444455666889999 8887 999999999999999999999999999999999988754 455555555543


Q ss_pred             HhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018940          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (348)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~  186 (348)
                      ...  .+       +.. .....    .+.+++.+...+...++..+..+  ++|+...++.. ...+|+.+++.+.+.+
T Consensus       342 ~~~--~~-------~~~-~~~~~----~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~g~~~~~~~~g~l  404 (438)
T 3o7q_A          342 SAF--AG-------GHV-GLIAL----TLCSAFMSIQYPTIFSLGIKNLG--QDTKYGSSFIV-MTIIGGGIVTPVMGFV  404 (438)
T ss_dssp             HHH--CC-------HHH-HHHHH----HHHHHHHTTHHHHHHHHHHSSCG--GGHHHHHHHHH-HTTHHHHHHHHHHHHH
T ss_pred             HHH--cC-------CcH-HHHHH----HHHHHHHHHHHHHHHHHHHhhcc--ccccchhhHHH-HHHHHHHHHHHHHHHH
Confidence            321  11       111 21111    24556666666667777677664  34767666655 4456666655555444


Q ss_pred             H
Q 018940          187 F  187 (348)
Q Consensus       187 ~  187 (348)
                      .
T Consensus       405 ~  405 (438)
T 3o7q_A          405 S  405 (438)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.88  E-value=3.3e-08  Score=95.28  Aligned_cols=173  Identities=12%  Similarity=-0.018  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc
Q 018940           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (348)
Q Consensus        42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~  121 (348)
                      .+..|.+.+.++.+.+.........+..+...+..++.+++.||+|||+.++ .+....+++...+......     ..+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~-~~~~~~~~~~~~l~~~~~~-----~~~  368 (491)
T 4gc0_A          295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQI-IGALGMAIGMFSLGTAFYT-----QAP  368 (491)
T ss_dssp             HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHH-HHHHHHHHHHHHHHHHHHT-----TCC
T ss_pred             HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhc-cchHHHHHHHHHHHHHHhc-----ccc
Confidence            3344555555556888877777778888889999999999999999998754 5555555554332110001     111


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHH-HhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhh
Q 018940          122 LKVETISYCVFAAIFNVGWAATQ-VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (348)
Q Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~  200 (348)
                      .. ..+...   .++..+++... .....+.+|+.| .+.|++..++.+..+.+++.+++.+.+.+......    ....
T Consensus       369 ~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~E~fP-t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~----~~~~  439 (491)
T 4gc0_A          369 GI-VALLSM---LFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL----VAHF  439 (491)
T ss_dssp             HH-HHHHHH---HHHHHHHHTTTTHHHHHHHHHSSC-TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH----HHHH
T ss_pred             hH-HHHHHH---HHHHHHHHhHHHHHHHHHHHHhCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhh
Confidence            11 111111   12222233221 223467889885 57899999998888888888877664333221000    0123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 018940          201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (348)
Q Consensus       201 g~~~~~~i~~~i~~~~~ll~~~~~~e~~~  229 (348)
                      ++.+.++++++++++..++.++++||.+.
T Consensus       440 ~~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          440 HNGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence            44556778888888888888899999654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.85  E-value=3.2e-09  Score=102.50  Aligned_cols=173  Identities=9%  Similarity=-0.141  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHH----HHHHHHHHHHHHHhcCc
Q 018940           37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG----AGSVLVAVSFSSVFGGC  111 (348)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~----~~~~~~~i~~~~l~~~~  111 (348)
                      .........+++.|.++. +.+..+.+.+.....+...+..++.|+++||+|||++...    .+....++++..+..  
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~--  373 (491)
T 4aps_A          296 WAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI--  373 (491)
T ss_dssp             HHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH--
T ss_pred             HHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH--
Confidence            333334456778888886 7776778888888899999999999999999999865321    344444444321110  


Q ss_pred             CCCcc--cCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018940          112 MPCRI--LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (348)
Q Consensus       112 ~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~  189 (348)
                      .+...  ....+..+....    ..+.+++.+...++..+++.|..| +++|+++.++.+....+|..+++.+.    +.
T Consensus       374 ~~~~~~~~~~~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~i~~~~~----~~  444 (491)
T 4aps_A          374 PGALYGTSGKVSPLWLVGS----WALVILGEMLISPVGLSVTTKLAP-KAFNSQMMSMWFLSSSVGSALNAQLV----TL  444 (491)
T ss_dssp             HHHHCCCCTTCCTHHHHHH----HHHHHHHHHTTTTHHHHHHHHHTT-TTCSSSSTHHHHHHHHHHHHHHHHHG----GG
T ss_pred             HHHhcCCCCCccHHHHHHH----HHHHHHHHHHHhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence            00000  001122222222    235667777666677788888875 57899999998888888877755432    22


Q ss_pred             ccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018940          190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (348)
Q Consensus       190 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~  227 (348)
                      +.       +.++.+.+.+++++.++..++.++..++.
T Consensus       445 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          445 YN-------AKSEVAYFSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             GG-------GSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred             Hh-------cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21       22444556666666666666665555553

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.18  E-value=5.2e-07  Score=83.67  Aligned_cols=141  Identities=13%  Similarity=-0.004  Sum_probs=88.6

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHH-HHHHHH
Q 018940           28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL-VAVSFS  105 (348)
Q Consensus        28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~-~~i~~~  105 (348)
                      ...+..+...........++|.|+++. |.++.+.|.+.+...+...++.++.|++.||+|| +.  ..+... ...+..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~~--~~~~~~~~~~~~~  279 (375)
T 2gfp_A          203 CYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-LM--WQSVICCLLAGLL  279 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-HH--HHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHH
Confidence            334444444555556667788888885 9999999999999999999999999999999987 22  222222 111110


Q ss_pred             HHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Q 018940          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (348)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~  182 (348)
                      ...   .+  .....+.+ .   ..+...+.+++.+...+...++..|..|  |+|++..+..+....+|..+++.+
T Consensus       280 ~~~---~~--~~~~~~~~-~---~~~~~~l~g~~~~~~~~~~~~~~~~~~p--~~~g~~~g~~~~~~~~g~~~~~~~  345 (375)
T 2gfp_A          280 MWI---PD--WFGVMNVW-T---LLVPAALFFFGAGMLFPLATSGAMEPFP--FLAGTAGALVGGLQNIGSGVLASL  345 (375)
T ss_dssp             SSH---HH--HHHHHHHH-H---HHHHHHHHHHHHHHTSSTTHHHHHTHHH--HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred             HHH---Hh--hhccccHH-H---HHHHHHHHHHHHHHhhHHHHHHHHHhCC--cccchHHHHHHHHHHHHHHHHHHH
Confidence            000   00  00000111 1   1112235667777777777788888764  689999999888877776665443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.15  E-value=8.4e-06  Score=79.07  Aligned_cols=119  Identities=14%  Similarity=0.105  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhh----cccCCc---hHHHHHHHHHHHHHHHHHhcCcCCCccc--CcccchhHHHHHH
Q 018940           60 GAAAVMLSGQIADGFATIFIGELI----DRFGHF---KIWHGAGSVLVAVSFSSVFGGCMPCRIL--STSTLKVETISYC  130 (348)
Q Consensus        60 ~~g~i~~~~~i~~~i~~p~~G~l~----Dr~Grr---r~~i~~~~~~~~i~~~~l~~~~~~~~~~--~~~~~~~~~~~~~  130 (348)
                      ..+.+.....+...+..++.|++.    ||.|||   +..+..+....++++..+..  .+....  ...+..+....+ 
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-  412 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGT--IQLMMDGGSALSIFWQILPY-  412 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTT--TTTTTTTTCCCCSHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH--HHHHhcCCCCcCHHHHHHHH-
Confidence            355565565666677788888875    555432   12344555555555432211  110000  011222222222 


Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 018940          131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (348)
Q Consensus       131 l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~  185 (348)
                         .+.+++.+...++..+++.+..| +++|++..++.+....+|+.+++.+.+.
T Consensus       413 ---~l~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~~~g~  463 (524)
T 2xut_A          413 ---ALLTFGEVLVSATGLEFAYSQAP-KAMKGTIMSFWTLSVTVGNLWVLLANVS  463 (524)
T ss_dssp             ---HHHHHHHHHHHHHHTTTHHHHCC-TTCCTTTHHHHGGGHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence               35677777777888888988885 5789999999988888888887665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.89
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.8
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.07
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.01

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.2e-22  Score=191.36  Aligned_cols=252  Identities=13%  Similarity=0.058  Sum_probs=181.4

Q ss_pred             HHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchh
Q 018940           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (348)
Q Consensus        45 ~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~  124 (348)
                      +...++.+|.|+|++++|++.++..+..++++++.|+++||+||||.+ ..+.++.+++..+...  .+.   ...+...
T Consensus        45 ~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~-~~~~~~~~~~~~~~~~--~~~---~~~~~~~  118 (447)
T d1pw4a_          45 ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL-PAGLILAAAVMLFMGF--VPW---ATSSIAV  118 (447)
T ss_dssp             HHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHHHHH--CHH---HHSSSSH
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHhhccc--cch---hhhhHHH
Confidence            455567777899999999999999999999999999999999999875 4566666665543221  110   0112232


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHH
Q 018940          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (348)
Q Consensus       125 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  204 (348)
                      ..+.    ..+.+++.+....+..++++|..+ +++|++..++.+.+..+|..+++.+.......         ..+|++
T Consensus       119 ~~~~----~~~~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~---------~~~w~~  184 (447)
T d1pw4a_         119 MFVL----LFLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---------FNDWHA  184 (447)
T ss_dssp             HHHH----HHHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---------TCCSTT
T ss_pred             HHHH----HHHHHHhhhhhhhHHHHHHHHHHH-hhcccccccccccccchhhhhhhhhhhhHhhh---------hhcccc
Confidence            2222    235677777777788889999885 67899999999999888888776654444332         236888


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccccc-----c-cC-------------CchhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018940          205 IAYSSIFIGCCFVGIFLSRTEEPRLKMG-----L-RG-------------NSHARISWAYWFKKILYYQVALVYMLTRLV  265 (348)
Q Consensus       205 ~~~i~~~i~~~~~ll~~~~~~e~~~~~~-----~-~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  265 (348)
                      .+++.+++..+..++.+...+|++.+..     + ++             ....+...+..++||.++......++....
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (447)
T d1pw4a_         185 ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL  264 (447)
T ss_dssp             CTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhh
Confidence            8888777777777777777766432110     0 00             001122345667788888777777777788


Q ss_pred             HHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhh
Q 018940          266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL  316 (348)
Q Consensus       266 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~  316 (348)
                      .+....|.|.|+.+..+.+..+.+....+..++++++.++.+++ ||++|+.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  316 (447)
T d1pw4a_         265 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN  316 (447)
T ss_dssp             HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             hhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc
Confidence            88889999999999999988777766677778889999999998 9999874

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=7.1e-18  Score=154.99  Aligned_cols=292  Identities=11%  Similarity=0.040  Sum_probs=155.0

Q ss_pred             hHhhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHH
Q 018940           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV  102 (348)
Q Consensus        24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i  102 (348)
                      ++....+...+..........++++.|++|. |+|++++|++.++..+...+.+|++|+++||+||||+++. +.....+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~-~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW-IITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHH-HHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH-HHHHHHH
Confidence            3444555556666677777789999999886 9999999999999999999999999999999999998654 4444444


Q ss_pred             HHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccC-cccchhHHHHHHHHHHHHHHHHHH
Q 018940          103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYA  181 (348)
Q Consensus       103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~R~~~~~~~~~~~~ig~~~~~~  181 (348)
                      +......  .+       ..........+.....+.+.+....+......+...+ ++++.+..+........+..+++.
T Consensus        86 ~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (417)
T d1pv7a_          86 MFAPFFI--FI-------FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             THHHHHH--HT-------HHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--hh-------hhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccc
Confidence            4432221  11       0000100011100111111111111111112111111 122333444444454555555444


Q ss_pred             HHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc------cCCchhHHHHHHHHHhHHHHHH
Q 018940          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL------RGNSHARISWAYWFKKILYYQV  255 (348)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  255 (348)
                      +.+.+.           ..+|++.+........+...+..+..+|++.++++      ++++..++..++..+++..+..
T Consensus       157 ~~~~l~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (417)
T d1pv7a_         157 IVGIMF-----------TINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFL  225 (417)
T ss_dssp             HHHHHH-----------HHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHH
T ss_pred             cccccc-----------cccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccch
Confidence            333322           23455555555555555555566666654332211      1111122233344444443433


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHH---hhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 018940          256 ALVYMLTRLVVNVSQAYLAFYV---INDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG  331 (348)
Q Consensus       256 ~l~~~~~~~~~~~~~~~~~~yl---~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~  331 (348)
                      ................+.+.+.   .+..+.+....+.......++..++..+.+++ ||.|+|  +.+..+..+.+++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~  303 (417)
T d1pv7a_         226 SLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK--NALLLAGTIMSVRI  303 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH--HHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc--cchhhhHHHHHHhh
Confidence            3322222222222222333332   23333333334444455556777888888887 999999  88889988888888


Q ss_pred             HhHhhcc
Q 018940          332 AGILILP  338 (348)
Q Consensus       332 ~~~~~~~  338 (348)
                      +...+.+
T Consensus       304 ~~~~~~~  310 (417)
T d1pv7a_         304 IGSSFAT  310 (417)
T ss_dssp             HHHHTCC
T ss_pred             hcccccc
Confidence            7776654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=3.3e-09  Score=98.07  Aligned_cols=177  Identities=8%  Similarity=-0.056  Sum_probs=104.1

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHH
Q 018940           28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (348)
Q Consensus        28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~  106 (348)
                      ......+...........+.+.|+++. +.+..+.+....+..+...++.++.|+++||++||+................
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (447)
T d1pw4a_         253 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT  332 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHH
Confidence            334444444555556668888888887 9999999999999999999999999999999988654332221111111111


Q ss_pred             HhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHH-HHHHHHHHH
Q 018940          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN-LSLYAIAFI  185 (348)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~-~~~~~~~~~  185 (348)
                      ...   ..  ....+.....+..    .+.+.+.+.......+...|..+ +++|+++.++.+....+++ ++++.+.+.
T Consensus       333 ~~~---~~--~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~~g~~~~~~~~g~  402 (447)
T d1pw4a_         333 IVY---WM--NPAGNPTVDMICM----IVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVGY  402 (447)
T ss_dssp             HHT---TS--CCTTCHHHHHHHH----HHHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH---Hh--cccccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111   10  1112222121111    24445544555556677778774 5778999888776666543 444444434


Q ss_pred             HHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 018940          186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRT  224 (348)
Q Consensus       186 ~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~  224 (348)
                      +.+          ..||+..+.+.+...++..++.....
T Consensus       403 ~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         403 TVD----------FFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHH----------SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH----------HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            332          34666666665555555444444443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=2.2e-09  Score=97.06  Aligned_cols=149  Identities=11%  Similarity=0.017  Sum_probs=104.4

Q ss_pred             CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHH
Q 018940           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (348)
Q Consensus        55 g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  134 (348)
                      +.+....+.......+...+..++.|++.||+|||+.+. .+....++....+..  .       .+.+...+.    ..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~-~~~~~~~~~~~~~~~--~-------~~~~~~~~~----~~  320 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL-LAGTIMSVRIIGSSF--A-------TSALEVVIL----KT  320 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHT--C-------CCHHHHHHH----HH
T ss_pred             ccchhhhcccccccccccccchhhhhhhhcccccccchh-hhHHHHHHhhhcccc--c-------cccchhhHH----HH
Confidence            456677888899999999999999999999999988754 555565555543331  1       122222221    23


Q ss_pred             HHHHHHHHHHHhHhhhhhhcccCcccchhHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHH
Q 018940          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG  213 (348)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~-~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~  213 (348)
                      +.+++.+...++..+++.|..+ +++|++..+.. +....+|..+++.+.+.+.          +..|++..+++.+++.
T Consensus       321 l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~----------~~~g~~~~~~~~~~~~  389 (417)
T d1pv7a_         321 LHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAGNMY----------ESIGFQGAYLVLGLVA  389 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSC-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH----------HHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHCHHHHHHHHHHHH
Confidence            5677777778888889999885 67888887764 3455667776665554444          2467888888888888


Q ss_pred             HHHHHHHHhhccccc
Q 018940          214 CCFVGIFLSRTEEPR  228 (348)
Q Consensus       214 ~~~~ll~~~~~~e~~  228 (348)
                      ++..++..+..++++
T Consensus       390 ~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         390 LGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHhhcCCC
Confidence            888888877777643