Citrus Sinensis ID: 018950

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIGSSALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNSLLASSSSSNPHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLENHGPSTKKNSKAEFSQDESVVSNHEFIQGSFDDHEDPSSSAGPVALDCLWNY
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHcccccccccccEEEEEccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccccccEEEEEEcccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEccccccccccHHccccccEEEEEcccccccccccccccHcccccEEEccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEcccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHcccc
Coil and Loop (DISEMBL)
mekyddqeqielppgfrfhptdeelithyltpkvfdgcfsaraigevdlnkcepwdlprrakmgekeWYFFCVrdrkyptglrtnrateagywkatgkdKEIYKAKALVGMKKTLVFykgrapkgqktnWVMHEYRLEgkysaydhpktaknEWVICRVFqksgggkkthIQGMVKLgsfgngigssalpplmdsspynsetrttinetshvtcfsdalEDQKAQEDMIDSFNNsllasssssnphseispasiffskssfsnslyadqilprianmqypdsflMQDQSILKMLLEnhgpstkknskaefsqdesvvsnhefiqgsfddhedpsssagpvalDCLWNY
Flexible Loop (DISEMBL)
mekyddqeqielppgfrfhPTDEELITHYLTPKVFDGCFSARAIgevdlnkcepwdlprrakmgekewyffcvrdrkyptglrtnrateagywkatgkdkEIYKAKALVGMKKTLVfykgrapkgqktnwVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIGSSALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNSLLASSSSSNPHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLENHGPSTKKNSKAEFSQDESVVSNHEFIQGsfddhedpsssagpvaldcLWNY
Low Complexity Region (SEG)
MEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIGSSALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDsfnnsllasssssnphseispasiffskssfsnsLYADQILPRIANMQYPDSFLMQDQSILKMLLENHGPSTKKNSKAEFSQDESVVSNHEFIQGSFDDHEDPSSSAGPVALDCLWNY
Disordered region (IsUnstruct)
***************FRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGN************************************************************************FF****FSNSLYADQILPRIANMQYPDSFLMQDQSILKML************************************************DCLW**
Disordered Region (DISOPRED)
*************PGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRL****************WVICRVFQ**********************************************************************************************************************************************************************************VALDCLWNY
Disordered Region (DISEMBL)
MEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIGSSALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNSL*************SPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLENH*****************VVSNHEFIQGSF*********AGPVALDCLWNY
Disordered Region (DISPRO)
*********IELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYS*****KTAKNEWVICRVFQKSG*************************************************************EDMIDSFNNSLLASSSSSNPHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLEN******************************************VALDCLWNY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIGSSALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNSLLASSSSSNPHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLENHGPSTKKNSKAEFSQDESVVSNHEFIQGSFDDHEDPSSSAGPVALDCLWNY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q9FLJ2	336	NAC domain-containing pro	yes	no	0.922	0.955	0.573	1e-106
O04017	375	Protein CUP-SHAPED COTYLE	no	no	0.436	0.405	0.811	1e-72
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.568	0.638	0.577	3e-65
Q9S851	334	Protein CUP-SHAPED COTYLE	no	no	0.471	0.491	0.668	3e-63
Q5CD17	396	NAC domain-containing pro	no	no	0.439	0.386	0.612	6e-58
Q84TE6	324	NAC domain-containing pro	no	no	0.744	0.799	0.422	1e-57
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.422	0.431	0.608	1e-49
Q9FWX2	395	NAC domain-containing pro	no	no	0.419	0.369	0.587	5e-49
Q93VY3	297	NAC domain-containing pro	no	no	0.474	0.555	0.538	6e-49
Q9C878	305	Protein BEARSKIN1 OS=Arab	no	no	0.540	0.616	0.483	3e-48

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  387 bits (993), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/349 (57%), Positives = 240/349 (68%), Gaps = 28/349 (8%)

Query: 6   DQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGE 65
           ++EQ++LPPGFRFHPTDEELITHYL  KV D  FSA+AIGEVDLNK EPW+LP  AKMGE
Sbjct: 10  EEEQMDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMGE 69

Query: 66  KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKG 125
           KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIY+ K+LVGMKKTLVFY+GRAPKG
Sbjct: 70  KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKG 129

Query: 126 QKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIG 185
           QKTNWVMHEYRLEGK+SA++ PKTAKNEWVICRVFQKS GGKK  I  ++++GS G    
Sbjct: 130 QKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSAGGKKIPISSLIRIGSLGTDFN 189

Query: 186 SSALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNSLLASSSSSNP 245
            S LP L DSSPYN +T+T   E  +V CFS+  +  + Q   ++ F++ +L S      
Sbjct: 190 PSLLPSLTDSSPYNDKTKT---EPVYVPCFSN--QTDQNQGTTLNCFSSPVLNSIQ---- 240

Query: 246 HSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLENH------G 299
                 A IF         LY  Q L    N+Q P   L Q+ S+L  ++EN+       
Sbjct: 241 ------ADIFHRI-----PLYQTQSLQVSMNLQSP--VLTQEHSVLHAMIENNRRQSLKT 287

Query: 300 PSTKKNSKAEFSQDESVVSNHEFIQGSFDDHEDPSSSAGPVALDCLWNY 348
            S  + +      +  + S+ EF +  FD  EDPSSS GPV L+  WNY
Sbjct: 288 MSVSQETGVSTDMNTDISSDFEFGKRRFDSQEDPSSSTGPVDLEPFWNY 336

Arabidopsis thaliana (taxid: 3702)

>sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1

 Score =  273 bits (699), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 125/154 (81%), Positives = 139/154 (90%), Gaps = 2/154 (1%)

Query: 12  LPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFF 71
           LPPGFRFHPTDEELITHYL  KV DGCFS+RAI EVDLNKCEPW LP RAKMGEKEWYFF
Sbjct: 17  LPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKEWYFF 76

Query: 72  CVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAK--ALVGMKKTLVFYKGRAPKGQKTN 129
            +RDRKYPTGLRTNRATEAGYWKATGKD+EI+ +K  ALVGMKKTLVFYKGRAPKG+K+N
Sbjct: 77  SLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRAPKGEKSN 136

Query: 130 WVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKS 163
           WVMHEYRLEGK+S +   +++K+EWVI RVFQK+
Sbjct: 137 WVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKT 170

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score =  248 bits (634), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 126/218 (57%), Positives = 159/218 (72%), Gaps = 20/218 (9%)

Query: 7   QEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEK 66
           +++  +PPGFRFHPTDEELIT+YL  KV D  FS  AI +VDLNK EPW+LP +AKMGEK
Sbjct: 15  EDESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAKMGEK 74

Query: 67  EWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEI--YKAKALVGMKKTLVFYKGRAPK 124
           EWYFF +RDRKYPTGLRTNRATEAGYWKATGKD+EI   K K+L+GMKKTLVFYKGRAPK
Sbjct: 75  EWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAPK 134

Query: 125 GQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSG-GGKKTHI----QGMVKLGS 179
           G+K+ WVMHEYRL+GK+S +    +AK+EWV+C+V  KSG   ++T++          G 
Sbjct: 135 GEKSCWVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKSGVVSRETNLISSSSSSAVTGE 194

Query: 180 FGNGIGSSALPPLMDSSPYNSETRTTINETSHVTCFSD 217
           F +    SA+ P++++             T HV+CFS+
Sbjct: 195 FSS--AGSAIAPIINTFA-----------TEHVSCFSN 219

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S851|NAC31_ARATH Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1

 Score =  242 bits (618), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/169 (66%), Positives = 129/169 (76%), Gaps = 5/169 (2%)

Query: 5   DDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMG 64
           +++ +  LPPGFRFHPTDEELIT YL  K+F G  S   I EVDLN+CEPW+LP  AKMG
Sbjct: 15  EERNERGLPPGFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLNRCEPWELPEMAKMG 74

Query: 65  EKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKA--LVGMKKTLVFYKGRA 122
           E+EWYF+ +RDRKYPTGLRTNRAT AGYWKATGKDKE++      LVGMKKTLVFYKGRA
Sbjct: 75  EREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRA 134

Query: 123 PKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHI 171
           P+G KT WVMHEYRLE  +S   H  T K EWVICRVF K+G  K   +
Sbjct: 135 PRGLKTKWVMHEYRLENDHS---HRHTCKEEWVICRVFNKTGDRKNVGL 180

Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score =  224 bits (572), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 106/173 (61%), Positives = 122/173 (70%), Gaps = 20/173 (11%)

Query: 12  LPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFF 71
           LPPGFRFHPTD E+I  YL  K+ +  F++  IGEVDLNKCEPWDLP +AKMGEKEWYFF
Sbjct: 19  LPPGFRFHPTDAEVILSYLLQKLLNPSFTSLPIGEVDLNKCEPWDLPSKAKMGEKEWYFF 78

Query: 72  CVRDRKYPTGLRTNRATEAGYWKATGKDKEIY----------------KAKALVGMKKTL 115
             +D KYPTG+RTNRAT+ GYWKATGKD+EI+                K K LVGMKKTL
Sbjct: 79  SHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQLVGMKKTL 138

Query: 116 VFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPK---TAKNEWVICRVFQKSGG 165
           VFY GRAPKG KTNWVMHE+RL      + HP      K+EWV+C+VF K  G
Sbjct: 139 VFYMGRAPKGTKTNWVMHEFRLHANLHNH-HPNLRLNPKDEWVVCKVFHKKQG 190

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84TE6|NAC22_ARATH NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2

 Score =  224 bits (570), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 126/298 (42%), Positives = 175/298 (58%), Gaps = 39/298 (13%)

Query: 9   QIELPPGFRFHPTDEELITHYLTPK-VFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKE 67
           + +LPPGFRFHP D+EL+  YL  + + +       + +VDLNKCEPWD+P+ A +G K+
Sbjct: 16  EAKLPPGFRFHPKDDELVCDYLMRRSLHNNHRPPLVLIQVDLNKCEPWDIPKMACVGGKD 75

Query: 68  WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQK 127
           WYF+  RDRKY TGLRTNRAT  GYWKATGKD+ I +   LVGM+KTLVFY+GRAP+G+K
Sbjct: 76  WYFYSQRDRKYATGLRTNRATATGYWKATGKDRTILRKGKLVGMRKTLVFYQGRAPRGRK 135

Query: 128 TNWVMHEYRLEGKYSAYDHPKTA-KNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIGS 186
           T+WVMHE+RL+G +   +H  ++ K +WV+CRVF K+  G    +     +GS  +   S
Sbjct: 136 TDWVMHEFRLQGSHHPPNHSLSSPKEDWVLCRVFHKNTEG----VICRDNMGSCFDETAS 191

Query: 187 SALPPLMD---------SSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNSLL 237
           ++LPPLMD         SS  + +    INE  HV CFS+  ++Q    ++ +S  + L 
Sbjct: 192 ASLPPLMDPYINFDQEPSSYLSDDHHYIINE--HVPCFSNLSQNQTLNSNLTNSV-SELK 248

Query: 238 ASSSSSNPHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLL 295
               + NP          F+  S S            A +   DSF   DQ +L+ LL
Sbjct: 249 IPCKNPNP---------LFTGGSAS------------ATLTGLDSFCSSDQMVLRALL 285

Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score =  197 bits (500), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/156 (60%), Positives = 112/156 (71%), Gaps = 9/156 (5%)

Query: 12  LPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMG---EKEW 68
           +PPGFRFHPTDEEL+ +YL  K+    F    I EVDLNK EPWDL  R K+G   + EW
Sbjct: 9   VPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTPQNEW 68

Query: 69  YFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKT 128
           YFF  +DRKYPTG RTNRAT AG+WKATG+DK I  +   +GM+KTLVFYKGRAP GQKT
Sbjct: 69  YFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKT 128

Query: 129 NWVMHEYRLEGKYSAYDHPKTAKNE--WVICRVFQK 162
           +W+MHEYRLE      D P+   +E  WV+CRVF K
Sbjct: 129 DWIMHEYRLEDA----DDPQANPSEDGWVVCRVFMK 160

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/155 (58%), Positives = 112/155 (72%), Gaps = 9/155 (5%)

Query: 12  LPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKE---W 68
           +PPGFRFHPTDEEL+ +YL  KV         I ++DL K EPWDL    K+G +E   W
Sbjct: 7   VPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQSDW 66

Query: 69  YFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKT 128
           YFF  +D+KYPTG RTNRAT+AG+WKATG+DK IY   +L+GM+KTLVFYKGRAP GQK+
Sbjct: 67  YFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNGQKS 126

Query: 129 NWVMHEYRLEGKYSAYDHPKTAKNE-WVICRVFQK 162
           +W+MHEYRLE      D   T + E WV+CRVF+K
Sbjct: 127 DWIMHEYRLET-----DENGTPQEEGWVVCRVFKK 156

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score =  194 bits (494), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 114/167 (68%), Gaps = 2/167 (1%)

Query: 5   DDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMG 64
           D   Q+ LPPGFRF+PTDEEL+  YL  KV    FS + IG++DL K +PWDLP +A  G
Sbjct: 7   DPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLYKFDPWDLPSKALFG 66

Query: 65  EKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPK 124
           EKEWYFF  RDRKYP G R NR   +GYWKATG DK I      VG+KK LVFY G+APK
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRRVGIKKALVFYAGKAPK 126

Query: 125 GQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHI 171
           G KTNW+MHEYRL     +  H  +  ++WV+CR+++K+ G ++  +
Sbjct: 127 GTKTNWIMHEYRL--IEHSRSHGSSKLDDWVLCRIYKKTSGSQRQAV 171

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C878|BRN1_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN1 PE=2 SV=1

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/209 (48%), Positives = 134/209 (64%), Gaps = 21/209 (10%)

Query: 12  LPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMG---EKEW 68
           +PPGFRFHPTDEEL+ +YL  K+    F    I EVDLNK EPWDL  R K+G   + EW
Sbjct: 8   VPPGFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRCKIGSTPQNEW 67

Query: 69  YFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKT 128
           YFF  +DRKYPTG RTNRAT +G+WKATG+DK I  +   +GM+KTLVFYKGRAP GQKT
Sbjct: 68  YFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKT 127

Query: 129 NWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGS-FGNGIGSS 187
           +W+MHEYR+E      D P   ++ WV+CRVF+K         + + K+G+  G+ I ++
Sbjct: 128 DWIMHEYRIE---DTEDDP--CEDGWVVCRVFKK---------KNLFKVGNDVGSNISNN 173

Query: 188 ALPP---LMDSSPYNSETRTTINETSHVT 213
            L     +   SPY   +   +N+   ++
Sbjct: 174 RLEARSFIRRESPYQGISMFELNKPEEIS 202

Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
223718835	348	NAC domain protein [Citrus trifoliata]	1.0	1.0	0.991	0.0
225452871	363	PREDICTED: NAC domain-containing protein	0.997	0.955	0.695	1e-139
388827883	350	NAC domain protein DL-NACP [Pyrus betuli	0.925	0.92	0.656	1e-130
206572099	350	NAC domain protein [Malus x domestica] g	0.925	0.92	0.656	1e-129
224141015	309	NAC domain protein, IPR003441 [Populus t	0.844	0.951	0.621	1e-120
255547357	361	NAC domain-containing protein 21/22, put	0.959	0.925	0.603	1e-119
225457373	360	PREDICTED: NAC domain-containing protein	0.959	0.927	0.602	1e-119
224120650	359	NAC domain protein, IPR003441 [Populus t	0.959	0.930	0.608	1e-118
224132940	359	NAC domain protein, IPR003441 [Populus t	0.951	0.922	0.610	1e-116
296082943	290	unnamed protein product [Vitis vinifera]	0.821	0.986	0.616	1e-110

>gi|223718835|gb|ACM90162.1| NAC domain protein [Citrus trifoliata]

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/348 (99%), Positives = 346/348 (99%)

Query: 1   MEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRR 60
           MEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRR
Sbjct: 1   MEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRR 60

Query: 61  AKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKG 120
           AKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKT  FY+G
Sbjct: 61  AKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTXXFYRG 120

Query: 121 RAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSF 180
           RAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSF
Sbjct: 121 RAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSF 180

Query: 181 GNGIGSSALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNSLLASS 240
           GNGIGSSALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNSLLASS
Sbjct: 181 GNGIGSSALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNSLLASS 240

Query: 241 SSSNPHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLENHGP 300
           SSSNPHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLENHGP
Sbjct: 241 SSSNPHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLENHGP 300

Query: 301 STKKNSKAEFSQDESVVSNHEFIQGSFDDHEDPSSSAGPVALDCLWNY 348
           STKKNSKAEFSQDESVVSNHEFIQGSFDDHEDPSSSAGPVALDCLWNY
Sbjct: 301 STKKNSKAEFSQDESVVSNHEFIQGSFDDHEDPSSSAGPVALDCLWNY 348

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452871|ref|XP_002283811.1| PREDICTED: NAC domain-containing protein 100-like [Vitis vinifera]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 253/364 (69%), Positives = 292/364 (80%), Gaps = 17/364 (4%)

Query: 1   MEKYDDQ----EQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWD 56
           MEK  DQ    E +ELPPGFRFHPTDEELITHYL+ KV +  F A AIGEVDLNKCEPWD
Sbjct: 1   MEKAPDQSKDDEMMELPPGFRFHPTDEELITHYLSQKVLNSGFCAVAIGEVDLNKCEPWD 60

Query: 57  LPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLV 116
           LP +AKMGEKEWYFFCVRDRKYPTGLRTNRAT+AGYWKATGKDKEIYK K LVGMKKTLV
Sbjct: 61  LPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDKEIYKMKTLVGMKKTLV 120

Query: 117 FYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVK 176
           FYKGRAPKG+KTNWVMHEYRLEGK+S Y+ PKT KNEWVICRVFQKS GGKKTHI G+V+
Sbjct: 121 FYKGRAPKGEKTNWVMHEYRLEGKHSMYNLPKTTKNEWVICRVFQKSSGGKKTHISGLVR 180

Query: 177 LGSFGNGIGSSA-LPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNS 235
           +  +G+ + SS+ LPPL DSSP++SETR T+ ++SHVTCFS+ +ED+K QEDMIDSFNN 
Sbjct: 181 MDPYGDELRSSSQLPPLTDSSPFSSETR-TVGDSSHVTCFSNQMEDRKPQEDMIDSFNNP 239

Query: 236 LLASSSSSNPHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLL 295
           LLA+SSSS+  S+ISPAS+ FSK  F NS +  Q    + N Q+PDSFL+ DQSIL++LL
Sbjct: 240 LLAASSSSSNPSDISPASLLFSKFPFPNSFHTPQNPLNLGNCQFPDSFLIPDQSILRILL 299

Query: 296 ENHGPSTKKNSKAEFSQD-----------ESVVSNHEFIQGSFDDHEDPSSSAGPVALDC 344
           EN G   K +SK EFSQ+            SVVS HE +Q SF+D  DPS+SAGPV +DC
Sbjct: 300 ENQGSDMKPSSKTEFSQETGLSTDINTDISSVVSTHEMVQRSFEDQNDPSTSAGPVDIDC 359

Query: 345 LWNY 348
           LWNY
Sbjct: 360 LWNY 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388827883|gb|AFK79024.1| NAC domain protein DL-NACP [Pyrus betulifolia] gi|388827885|gb|AFK79025.1| NAC domain protein YL-NACP [Pyrus x bretschneideri]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/358 (65%), Positives = 271/358 (75%), Gaps = 36/358 (10%)

Query: 8   EQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKE 67
           EQ+ELPPGFRFHPTDEELI+HYL PKV D  F A+AIGEVDLNKCEPWDLPRRAKMGE+E
Sbjct: 12  EQMELPPGFRFHPTDEELISHYLCPKVLDNFFCAKAIGEVDLNKCEPWDLPRRAKMGERE 71

Query: 68  WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQK 127
           WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAK LVGMKKTLVFYKGRAPKG+K
Sbjct: 72  WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKTLVGMKKTLVFYKGRAPKGEK 131

Query: 128 TNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIGSS 187
           TNWVMHEYRL+GK SA + P+TAKNEWVICR+FQKS GGKK HI G+V+L  FGN + SS
Sbjct: 132 TNWVMHEYRLDGKNSACNLPQTAKNEWVICRIFQKSSGGKKIHISGLVRLSPFGNELRSS 191

Query: 188 ALPPLMDSSPYNSETRTTIN--ETSHVTCFSDALEDQKAQEDMIDSFNNSL--------L 237
            LPPLMDS PYNS+ RTT    ETS+V+CFSD  EDQK Q+D++DSFNNS          
Sbjct: 192 LLPPLMDSPPYNSDARTTPTPGETSYVSCFSDPPEDQKTQDDIMDSFNNSNNHHNNDIPY 251

Query: 238 ASSSSSNPHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLEN 297
           A SS SNP S++             NS+Y++QI P I  +Q+ +S LMQD+S ++ML EN
Sbjct: 252 ACSSPSNPSSDL-------------NSIYSNQITPNIGLLQHQNSVLMQDESFMRMLTEN 298

Query: 298 HGPSTKKNSKAEFSQD-------ESVVSNHEFIQGSFDDHEDPSSSAGPVALDCLWNY 348
             P+ ++++K EF QD        SVVSN E  Q      +DPS S+ P   DCLWNY
Sbjct: 299 QAPNLRRSAKIEFPQDAGLSIDASSVVSNREMAQ------DDPSYSSAPAEFDCLWNY 350

Source: Pyrus betulifolia

Species: Pyrus betulifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|206572099|gb|ACI13682.1| NAC domain protein [Malus x domestica] gi|302399023|gb|ADL36806.1| NAC domain class transcription factor [Malus x domestica]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/358 (65%), Positives = 270/358 (75%), Gaps = 36/358 (10%)

Query: 8   EQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKE 67
           EQ+ELPPGFRFHPTDEELI+HYL PKV D  F A+AIGEVDLNKCEPWDLP RAKMGE+E
Sbjct: 12  EQMELPPGFRFHPTDEELISHYLCPKVLDNFFCAKAIGEVDLNKCEPWDLPWRAKMGERE 71

Query: 68  WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQK 127
           WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAK LVGMKKTLVFYKGRAPKG K
Sbjct: 72  WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKTLVGMKKTLVFYKGRAPKGVK 131

Query: 128 TNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIGSS 187
           TNWVMHEYRL+GK SA + P+TAKNEWVICR+FQKS GGKK HI G+V+   F N + SS
Sbjct: 132 TNWVMHEYRLDGKNSACNLPQTAKNEWVICRIFQKSSGGKKIHISGLVRPSPFVNELRSS 191

Query: 188 ALPPLMDSSPYNSETRTTIN--ETSHVTCFSDALEDQKAQEDMIDSFNNSL--------L 237
            LPPLMDS PYNS+ RTT    ETSHV+CFSD  EDQK Q+D++DSFNNS          
Sbjct: 192 LLPPLMDSPPYNSDARTTPTACETSHVSCFSDPPEDQKTQDDIMDSFNNSNNHHNNDIPY 251

Query: 238 ASSSSSNPHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLEN 297
           A SS SNP + +             NS+Y++QI P I  +Q+ +S LMQDQS ++ML+EN
Sbjct: 252 ACSSPSNPSAHL-------------NSIYSNQITPNIGLLQHQNSVLMQDQSFMRMLIEN 298

Query: 298 HGPSTKKNSKAEFSQD-------ESVVSNHEFIQGSFDDHEDPSSSAGPVALDCLWNY 348
             P+ ++++K EFSQD        SVVSN E +Q      +DPS S+ PV  DCLWNY
Sbjct: 299 QAPNLRRSAKIEFSQDAGLSIDASSVVSNREMVQ------DDPSYSSAPVEFDCLWNY 350

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141015|ref|XP_002323870.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222866872|gb|EEF04003.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/351 (62%), Positives = 247/351 (70%), Gaps = 57/351 (16%)

Query: 5   DDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMG 64
           ++ EQ+ELPPGFRFHPTDEELITHYL+ KV D  F ARAIGEVDLNKCEPWDLP RAKMG
Sbjct: 9   EEDEQMELPPGFRFHPTDEELITHYLSQKVLDNYFCARAIGEVDLNKCEPWDLPWRAKMG 68

Query: 65  EKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPK 124
           EKEWYFFCV DRKYPTGLRTNRAT+AGYWKATGKDKEIY+AK LVGMKKTLVFYKGRAPK
Sbjct: 69  EKEWYFFCVIDRKYPTGLRTNRATDAGYWKATGKDKEIYRAKTLVGMKKTLVFYKGRAPK 128

Query: 125 GQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGI 184
           G+KTNWVMHEYRLEGK   Y+ PKTAKN+WVICR+F+KS GGKKTHI G+V+L S+GN +
Sbjct: 129 GEKTNWVMHEYRLEGKNPVYNPPKTAKNDWVICRIFEKSCGGKKTHISGLVRLSSYGNEL 188

Query: 185 GSSALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNSLLASSSSSN 244
             + LPPLMDSS +N++ RT I                                      
Sbjct: 189 KPTILPPLMDSSQHNNDKRTNI-------------------------------------- 210

Query: 245 PHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLENHGPSTKK 304
                    + FSK S  NS Y+  ILP IAN QYPDS +M + S+L++LLEN GP    
Sbjct: 211 ---------VLFSKPSPPNSFYSSHILPNIANFQYPDSVMMPEHSMLRILLENQGPGMNL 261

Query: 305 NSKAEFSQD-------ESVVSNHEFIQGSFDDHEDPSSSAGPVALDCLWNY 348
           NSK E S+D        SVV+NHE + GSF   EDPSSSAGPV LD LWNY
Sbjct: 262 NSKRELSEDTGLSTDMSSVVTNHELVHGSF---EDPSSSAGPVDLDYLWNY 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547357|ref|XP_002514736.1| NAC domain-containing protein 21/22, putative [Ricinus communis] gi|223546340|gb|EEF47842.1| NAC domain-containing protein 21/22, putative [Ricinus communis]

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/361 (60%), Positives = 267/361 (73%), Gaps = 27/361 (7%)

Query: 6   DQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGE 65
           + +Q++LPPGFRFHPTDEELI+HYL  KV D  FS+RAIG+VDLNK EPW+LP +AKMGE
Sbjct: 10  EDDQMDLPPGFRFHPTDEELISHYLYKKVLDISFSSRAIGDVDLNKSEPWELPWKAKMGE 69

Query: 66  KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKG 125
           KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIY+ K+LVGMKKTLVFYKGRAPKG
Sbjct: 70  KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKG 129

Query: 126 QKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIG 185
           +KTNWVMHEYRLEGKYS ++ PKTAKNEWVICRVFQKS GGKKTHI G+V+LGSFGN + 
Sbjct: 130 EKTNWVMHEYRLEGKYSIHNLPKTAKNEWVICRVFQKSSGGKKTHISGLVRLGSFGNELA 189

Query: 186 SSALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDS-FNNSLLASSSSSN 244
            + LPPLMDSSPY  +T+  + E+++V CFS+ ++ Q+ Q++ ID+ FN+  L S SS+ 
Sbjct: 190 PTVLPPLMDSSPYTGKTK-PVAESAYVPCFSNPIDIQRNQQESIDTAFNHHQLLSVSSN- 247

Query: 245 PHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLENHGPSTKK 304
                  +   F +  F NS Y+ Q LP  AN+QYP S  + + SIL++L+EN G + K+
Sbjct: 248 -------SCDIFPRFPFPNSFYSTQSLPLSANLQYPSSGSIPENSILRVLVENQGSNVKQ 300

Query: 305 NS-KAEF----------------SQDESVVSNHEFIQGSFDDHEDPSSSAGPVALDCLWN 347
            S K E                 ++  SV+SN E  +  FDD   PS+  G V LDCLWN
Sbjct: 301 QSFKTEREMISASQETGLTTEMNTEISSVISNLEMGKRPFDDQGLPSTCGGAVDLDCLWN 360

Query: 348 Y 348
           Y
Sbjct: 361 Y 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457373|ref|XP_002284825.1| PREDICTED: NAC domain-containing protein 100 isoform 1 [Vitis vinifera] gi|147810455|emb|CAN69806.1| hypothetical protein VITISV_019654 [Vitis vinifera]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/360 (60%), Positives = 258/360 (71%), Gaps = 26/360 (7%)

Query: 6   DQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGE 65
           + +Q+ LPPGFRFHPTDEELITHYL+ KV D  FSARAIG+V+LN  EPW+LP +AKMGE
Sbjct: 10  EDDQMILPPGFRFHPTDEELITHYLSKKVIDSNFSARAIGQVNLNNSEPWELPGKAKMGE 69

Query: 66  KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKG 125
           KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEI++ K+LVGMKKTLVFY GRAPKG
Sbjct: 70  KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYAGRAPKG 129

Query: 126 QKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIG 185
           +KTNWVMHEYRLEGK+S ++ P+TAKNEWVICRVFQKS GGKKTHI G+ +L S+GN + 
Sbjct: 130 EKTNWVMHEYRLEGKFSLHNLPQTAKNEWVICRVFQKSSGGKKTHISGIGRLSSYGNELN 189

Query: 186 SSALPPLMD-SSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNSLLASSSSSN 244
            S LPPLMD S+ YN  TR   +++ HV CFS+ ++  + QED+ D FNN LLA   SSN
Sbjct: 190 PSVLPPLMDASAAYNPRTRPATSQSPHVPCFSNPIDVPRNQEDIFDCFNNPLLA--ISSN 247

Query: 245 PHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLENHGPSTKK 304
           P       S  F +    N  Y+         +QYP SFLMQDQ  L+ LLENHG + ++
Sbjct: 248 P-------SDIFQRFHLPNPFYSSHAATIPGTLQYPTSFLMQDQPSLRALLENHGSNMRQ 300

Query: 305 NSKAE-----FSQD-----------ESVVSNHEFIQGSFDDHEDPSSSAGPVALDCLWNY 348
           + K E      SQ+            SVVSN E  +  F+D   PS+S GPV LD LWNY
Sbjct: 301 SQKLEREMISVSQETGLSTDINTEISSVVSNLELGKRPFEDQHVPSTSVGPVDLDPLWNY 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120650|ref|XP_002318383.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222859056|gb|EEE96603.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/360 (60%), Positives = 263/360 (73%), Gaps = 26/360 (7%)

Query: 5   DDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMG 64
           +D ++++LPPGFRFHPTDEELI+HYL  KV D  FSARAIG+VDLNK EPW+LP +AKMG
Sbjct: 10  EDDDKMDLPPGFRFHPTDEELISHYLYKKVLDINFSARAIGDVDLNKSEPWELPWKAKMG 69

Query: 65  EKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPK 124
           EKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIY+ K+LVGMKKTLVFYKGRAPK
Sbjct: 70  EKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPK 129

Query: 125 GQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGI 184
           G+KTNWVMHEYRLEGK+SA++ PKTAKNEWVICRVFQKS  GKKT+I G+V+LGSFGN  
Sbjct: 130 GEKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSSAGKKTYISGLVRLGSFGNEF 189

Query: 185 GSSALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNSLLASSSSSN 244
               LPPL DSSP N + +  + E+++V CFS+  +DQ+ Q+D  DSFNN L A   SSN
Sbjct: 190 SPYGLPPLTDSSPSNGKIK-PVAESAYVPCFSNLSDDQRNQQDTTDSFNNHLFA--VSSN 246

Query: 245 PHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLENHGPSTKK 304
           P SE+      F +    NS Y+ Q +    N+QYP S  +QD+S+LK L+EN G + K+
Sbjct: 247 P-SEV------FPRIPLLNSFYSPQAVAASGNLQYPGSVSIQDRSVLKALIENQGSNMKQ 299

Query: 305 NSK------AEFSQD---------ESVVSNHEFIQGSFDDHEDPSSS-AGPVALDCLWNY 348
            S       A  SQD          SV+SN E  + SFD+ E P  +    + LDC WNY
Sbjct: 300 QSSKLERDMASVSQDSAADMNNEISSVISNLEAGKRSFDEQEAPPCTLVQSMDLDCFWNY 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132940|ref|XP_002321447.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222868443|gb|EEF05574.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/357 (61%), Positives = 255/357 (71%), Gaps = 26/357 (7%)

Query: 8   EQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKE 67
           +Q++LPPGFRFHPTDEELI+HYL  KV D  FSA+AIG+VDLNK EPW+LP +AKMGEKE
Sbjct: 13  DQMDLPPGFRFHPTDEELISHYLYKKVLDITFSAKAIGDVDLNKSEPWELPWKAKMGEKE 72

Query: 68  WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQK 127
           WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIY+ K LVGMKKTLVFYKGRAPKG K
Sbjct: 73  WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKFLVGMKKTLVFYKGRAPKGGK 132

Query: 128 TNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIGSS 187
           TNWVMHEYRLEGK+S ++ PKTAKNEWVICRVFQKS  GKKTHI G+V+LGSF N    S
Sbjct: 133 TNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKTHISGLVRLGSFSNEFSPS 192

Query: 188 ALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNSLLASSSSSNPHS 247
            LPPLMDSSPYN + +  + E+++V CFS+ +  Q+ Q+D IDSF+N LLA   S+NP  
Sbjct: 193 GLPPLMDSSPYNCKIK-PVAESAYVPCFSNPINVQRNQQDTIDSFDNHLLA--FSTNPLE 249

Query: 248 EISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLENHGPSTKKNS- 306
                   F +    N  Y  Q +P   N+QYP S LMQD SIL+ L+ N G + K+ S 
Sbjct: 250 -------VFPRIPLLNPFYTPQAVPVSGNLQYPGSVLMQDHSILRALIANQGTNMKQQSF 302

Query: 307 KAE-----FSQDE---------SVVSNHEFIQGSFDDHE-DPSSSAGPVALDCLWNY 348
           K E      SQD          SV+SN E  + S DD +  PS+      LD  WNY
Sbjct: 303 KIERDMVGVSQDSTTDMNTEIYSVISNLEVGKRSGDDQDATPSTLVASTDLDSFWNY 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082943|emb|CBI22244.3| unnamed protein product [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/352 (61%), Positives = 243/352 (69%), Gaps = 66/352 (18%)

Query: 1   MEKYDDQ----EQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWD 56
           MEK  DQ    E +ELPPGFRFHPTDEELITHYL+ KV +  F A AIGEVDLNKCEPWD
Sbjct: 1   MEKAPDQSKDDEMMELPPGFRFHPTDEELITHYLSQKVLNSGFCAVAIGEVDLNKCEPWD 60

Query: 57  LPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLV 116
           LP +AKMGEKEWYFFCVRDRKYPTGLRTNRAT+AGYWKATGKDKEIYK K LVGMKKTLV
Sbjct: 61  LPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDKEIYKMKTLVGMKKTLV 120

Query: 117 FYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVK 176
           FYKGRAPKG+KTNWVMHEYRLEGK+S Y+ PKT KNEWVICRVFQKS GGKKTHI G+  
Sbjct: 121 FYKGRAPKGEKTNWVMHEYRLEGKHSMYNLPKTTKNEWVICRVFQKSSGGKKTHISGL-- 178

Query: 177 LGSFGNGIGSSALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQKAQEDMIDSFNNSL 236
                       LPPL DSSP++SETRT                                
Sbjct: 179 ------------LPPLTDSSPFSSETRT-------------------------------- 194

Query: 237 LASSSSSNPHSEISPASIFFSKSSFSNSLYADQILPRIANMQYPDSFLMQDQSILKMLLE 296
           +A+SSSS+  S+ISPAS+ FSK  F NS +  Q    + N Q+PDSFL+ DQSIL++LLE
Sbjct: 195 VAASSSSSNPSDISPASLLFSKFPFPNSFHTPQNPLNLGNCQFPDSFLIPDQSILRILLE 254

Query: 297 NHGPSTKKNSKAEFSQDESVVSNHEFIQGSFDDHEDPSSSAGPVALDCLWNY 348
           N G   K +SK E                SF+D  DPS+SAGPV +DCLWNY
Sbjct: 255 NQGSDMKPSSKTE----------------SFEDQNDPSTSAGPVDIDCLWNY 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2163153	336	NAC100 "NAC domain containing	0.617	0.639	0.738	1.8e-99
TAIR|locus:2160324	329	NAC080 "NAC domain containing	0.603	0.638	0.736	2e-96
TAIR|locus:2164895	285	NAC6 "NAC domain containing pr	0.640	0.782	0.696	6.4e-85
TAIR|locus:2087037	318	NAC3 "NAC domain containing pr	0.591	0.647	0.678	4.5e-84
TAIR|locus:2154684	375	CUC2 "CUP-SHAPED COTYLEDON 2"	0.436	0.405	0.811	1.8e-75
TAIR|locus:2172334	335	ANAC087 "Arabidopsis NAC domai	0.560	0.582	0.650	4.3e-70
TAIR|locus:2095958	338	NAC046 "NAC domain containing	0.543	0.559	0.670	2.1e-68
TAIR|locus:2095007	314	NAC058 "NAC domain containing	0.580	0.643	0.623	2.3e-64
TAIR|locus:2083656	310	CUC1 "CUP-SHAPED COTYLEDON1" [	0.574	0.645	0.572	2.3e-62
TAIR|locus:2011736	334	CUC3 "CUP SHAPED COTYLEDON3" [	0.459	0.479	0.684	1e-59

TAIR|locus:2163153 NAC100 "NAC domain containing protein 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 882 (315.5 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
 Identities = 161/218 (73%), Positives = 183/218 (83%)

Query:     6 DQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGE 65
             ++EQ++LPPGFRFHPTDEELITHYL  KV D  FSA+AIGEVDLNK EPW+LP  AKMGE
Sbjct:    10 EEEQMDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMGE 69

Query:    66 KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKG 125
             KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIY+ K+LVGMKKTLVFY+GRAPKG
Sbjct:    70 KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKG 129

Query:   126 QKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIG 185
             QKTNWVMHEYRLEGK+SA++ PKTAKNEWVICRVFQKS GGKK  I  ++++GS G    
Sbjct:   130 QKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSAGGKKIPISSLIRIGSLGTDFN 189

Query:   186 SSALPPLMDSSPYNSETRTTINETSHVTCFSDALEDQK 223
              S LP L DSSPYN +T+T   E  +V CFS+  +  +
Sbjct:   190 PSLLPSLTDSSPYNDKTKT---EPVYVPCFSNQTDQNQ 224

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2160324 NAC080 "NAC domain containing protein 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 869 (311.0 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
 Identities = 159/216 (73%), Positives = 185/216 (85%)

Query:     5 DDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMG 64
             +D EQ++LPPGFRFHPTDEELITHYL  KV D  FSA+AIGEVDLNK EPW+LP +AK+G
Sbjct:    10 EDDEQMDLPPGFRFHPTDEELITHYLHKKVLDLGFSAKAIGEVDLNKAEPWELPYKAKIG 69

Query:    65 EKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPK 124
             EKEWYFFCVRDRKYPTGLRTNRAT+AGYWKATGKDKEI++ K+LVGMKKTLVFY+GRAPK
Sbjct:    70 EKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFRGKSLVGMKKTLVFYRGRAPK 129

Query:   125 GQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGI 184
             GQKTNWVMHEYRL+GK SA++ PKTAKNEWVICRVF K+ GGKK  I  ++++GS+G G 
Sbjct:   130 GQKTNWVMHEYRLDGKLSAHNLPKTAKNEWVICRVFHKTAGGKKIPISTLIRIGSYGTG- 188

Query:   185 GSSALPPLMDSSPYNSETRTTINETSHVTCFSDALE 220
               S+LPPL DSSPYN +T+T   E  +V CFS+  E
Sbjct:   189 --SSLPPLTDSSPYNDKTKT---EPVYVPCFSNQAE 219

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2164895 NAC6 "NAC domain containing protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 6.4e-85, Sum P(2) = 6.4e-85
 Identities = 161/231 (69%), Positives = 178/231 (77%)

Query:     1 MEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRR 60
             +E  +D+E I+LPPGFRFHPTDEELITHYL PKVF+  FSA AIGEVDLNK EPWDLP +
Sbjct:     9 VEMVEDEEHIDLPPGFRFHPTDEELITHYLKPKVFNTFFSATAIGEVDLNKIEPWDLPWK 68

Query:    61 AKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKG 120
             AKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEI+K K+LVGMKKTLVFYKG
Sbjct:    69 AKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKG 128

Query:   121 RAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSF 180
             RAPKG KTNWVMHEYRLEGKY   + P+TAKNEWVICRVFQK   G K     M  L   
Sbjct:   129 RAPKGVKTNWVMHEYRLEGKYCIENLPQTAKNEWVICRVFQKRADGTKVP---MSMLDPH 185

Query:   181 GNGIGSSALPPLMDSSPYNSETRTTINETSHVTCFSDA-LEDQKAQEDMID 230
              N +  + LP LMD S  +S T      +SHVTCFSD   ED++   +  D
Sbjct:   186 INRMEPAGLPSLMDCSQRDSFT----GSSSHVTCFSDQETEDKRLVHESKD 232

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2087037 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
 Identities = 154/227 (67%), Positives = 171/227 (75%)

Query:     5 DDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMG 64
             +D E+I+LPPGFRFHPTDEELITHYL PKV +  FSA AIGEVDLNK EPWDLP +AK+G
Sbjct:    17 EDSEKIDLPPGFRFHPTDEELITHYLRPKVVNSFFSAIAIGEVDLNKVEPWDLPWKAKLG 76

Query:    65 EKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPK 124
             EKEWYFFCVRDRKYPTGLRTNRAT+AGYWKATGKDKEI+K K+LVGMKKTLVFYKGRAPK
Sbjct:    77 EKEWYFFCVRDRKYPTGLRTNRATKAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPK 136

Query:   125 GQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGI 184
             G KTNWVMHEYRLEGK++  +  KTAKNE VI RVF     G K H+            +
Sbjct:   137 GVKTNWVMHEYRLEGKFAIDNLSKTAKNECVISRVFHTRTDGTKEHMS-----------V 185

Query:   185 GSSALPPLMDSSPY------NSETRTTINET-SHVTCFSDALEDQKA 224
             G   LPPLMDSSPY      +S   TT+    SHVT FSD   D K+
Sbjct:   186 G---LPPLMDSSPYLKSRGQDSLAGTTLGGLLSHVTYFSDQTTDDKS 229

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IMP

TAIR|locus:2154684 CUC2 "CUP-SHAPED COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 1.8e-75, Sum P(3) = 1.8e-75
 Identities = 125/154 (81%), Positives = 139/154 (90%)

Query:    12 LPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFF 71
             LPPGFRFHPTDEELITHYL  KV DGCFS+RAI EVDLNKCEPW LP RAKMGEKEWYFF
Sbjct:    17 LPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKEWYFF 76

Query:    72 CVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAK--ALVGMKKTLVFYKGRAPKGQKTN 129
              +RDRKYPTGLRTNRATEAGYWKATGKD+EI+ +K  ALVGMKKTLVFYKGRAPKG+K+N
Sbjct:    77 SLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRAPKGEKSN 136

Query:   130 WVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKS 163
             WVMHEYRLEGK+S +   +++K+EWVI RVFQK+
Sbjct:   137 WVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKT 170

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048366 "leaf development" evidence=IMP

GO:0048504 "regulation of timing of organ formation" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2172334 ANAC087 "Arabidopsis NAC domain containing protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 134/206 (65%), Positives = 163/206 (79%)

Query:     7 QEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEK 66
             +E ++LPPGFRFHPTDEE+IT YL  KV +  F+A A+GE DLNKCEPWDLP+RAKMGEK
Sbjct:    16 EELVDLPPGFRFHPTDEEIITCYLKEKVLNSRFTAVAMGEADLNKCEPWDLPKRAKMGEK 75

Query:    67 EWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKA-LVGMKKTLVFYKGRAPKG 125
             E+YFFC RDRKYPTG+RTNRATE+GYWKATGKDKEI+K K  LVGMKKTLVFY+GRAPKG
Sbjct:    76 EFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGCLVGMKKTLVFYRGRAPKG 135

Query:   126 QKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTH------IQGMVKLGS 179
             +KTNWVMHEYRLEGKYS Y+ PK+A++EWV+CRVF K+     T       ++   ++ S
Sbjct:   136 EKTNWVMHEYRLEGKYSYYNLPKSARDEWVVCRVFHKNNPSTTTQPMTRIPVEDFTRMDS 195

Query:   180 FGNG---IGSSALPPLMDSSPYNSET 202
               N    +  S+LPPL+D S + S+T
Sbjct:   196 LENIDHLLDFSSLPPLIDPS-FMSQT 220

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2095958 NAC046 "NAC domain containing protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 130/194 (67%), Positives = 157/194 (80%)

Query:     6 DQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGE 65
             DQE ++LPPGFRFHPTDEE+ITHYL  KVF+  F+A AIG+ DLNK EPWDLP+ AKMGE
Sbjct:    14 DQEVVDLPPGFRFHPTDEEIITHYLKEKVFNIRFTAAAIGQADLNKNEPWDLPKIAKMGE 73

Query:    66 KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKA-LVGMKKTLVFYKGRAPK 124
             KE+YFFC RDRKYPTG+RTNRAT +GYWKATGKDKEI++ K  LVGMKKTLVFY GRAPK
Sbjct:    74 KEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRGKGCLVGMKKTLVFYTGRAPK 133

Query:   125 GQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKK-THIQGMVKLGSFGNG 183
             G+KTNWVMHEYRL+GKYS ++ PKTA++EWV+CRVF K+      T  + + ++ S  N 
Sbjct:   134 GEKTNWVMHEYRLDGKYSYHNLPKTARDEWVVCRVFHKNAPSTTITTTKQLSRIDSLDNI 193

Query:   184 ---IGSSALPPLMD 194
                +  S+LPPL+D
Sbjct:   194 DHLLDFSSLPPLID 207

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2095007 NAC058 "NAC domain containing protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 131/210 (62%), Positives = 151/210 (71%)

Query:    12 LPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFF 71
             LPPGFRFHPTDEELITHYL  KV D  F+ +A+ +VDLNKCEPWDLP +A MGEKEWYFF
Sbjct:     5 LPPGFRFHPTDEELITHYLCRKVSDIGFTGKAVVDVDLNKCEPWDLPAKASMGEKEWYFF 64

Query:    72 CVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWV 131
               RDRKYPTGLRTNRATEAGYWK TGKDKEIY++  LVGMKKTLVFYKGRAPKG+K+NWV
Sbjct:    65 SQRDRKYPTGLRTNRATEAGYWKTTGKDKEIYRSGVLVGMKKTLVFYKGRAPKGEKSNWV 124

Query:   132 MHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQG-MVKLGSFGN--GIGSSA 188
             MHEYRLE K     +P T K EWV+CRVF+KS   KK   Q       SFG+     SS 
Sbjct:   125 MHEYRLESKQPF--NP-TNKEEWVVCRVFEKSTAAKKAQEQQPQSSQPSFGSPCDANSSM 181

Query:   189 LPPL--MDSSPYNSETRTTINETSHVTCFS 216
                   +D  P  +   +TI+  +H+  +S
Sbjct:   182 ANEFEDIDELPNLNSNSSTIDYNNHIHQYS 211

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2083656 CUC1 "CUP-SHAPED COTYLEDON1" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 127/222 (57%), Positives = 161/222 (72%)

Query:     3 KYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAK 62
             +++D+    +PPGFRFHPTDEELIT+YL  KV D  FS  AI +VDLNK EPW+LP +AK
Sbjct:    13 RFEDESL--MPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAK 70

Query:    63 MGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIY--KAKALVGMKKTLVFYKG 120
             MGEKEWYFF +RDRKYPTGLRTNRATEAGYWKATGKD+EI   K K+L+GMKKTLVFYKG
Sbjct:    71 MGEKEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKG 130

Query:   121 RAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGG-GKKTHI----QGMV 175
             RAPKG+K+ WVMHEYRL+GK+S +    +AK+EWV+C+V  KSG   ++T++        
Sbjct:   131 RAPKGEKSCWVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKSGVVSRETNLISSSSSSA 190

Query:   176 KLGSFGNGIGSSALPPLMDSSPYNSETRTTINETSHVTCFSD 217
               G F +    SA+ P++++             T HV+CFS+
Sbjct:   191 VTGEFSSA--GSAIAPIINTFA-----------TEHVSCFSN 219

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0048467 "gynoecium development" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010072 "primary shoot apical meristem specification" evidence=TAS

GO:0048527 "lateral root development" evidence=TAS

GO:0051782 "negative regulation of cell division" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009790 "embryo development" evidence=IGI

GO:0009908 "flower development" evidence=IGI;IMP

GO:0010014 "meristem initiation" evidence=IGI;IMP

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2011736 CUC3 "CUP SHAPED COTYLEDON3" [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 113/165 (68%), Positives = 128/165 (77%)

Query:     5 DDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMG 64
             +++ +  LPPGFRFHPTDEELIT YL  K+F G  S   I EVDLN+CEPW+LP  AKMG
Sbjct:    15 EERNERGLPPGFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLNRCEPWELPEMAKMG 74

Query:    65 EKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKA--LVGMKKTLVFYKGRA 122
             E+EWYF+ +RDRKYPTGLRTNRAT AGYWKATGKDKE++      LVGMKKTLVFYKGRA
Sbjct:    75 EREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRA 134

Query:   123 PKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGK 167
             P+G KT WVMHEYRLE  +S   H  T K EWVICRVF K+G  K
Sbjct:   135 PRGLKTKWVMHEYRLENDHS---HRHTCKEEWVICRVFNKTGDRK 176

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010014 "meristem initiation" evidence=IGI;RCA;TAS

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IGI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLJ2	NC100_ARATH	No assigned EC number	0.5730	0.9224	0.9553	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	7e-83

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  247 bits (632), Expect = 7e-83
 Identities = 89/130 (68%), Positives = 100/130 (76%), Gaps = 3/130 (2%)

Query: 12  LPPGFRFHPTDEELITHYLTPKVFDG-CFSARAIGEVDLNKCEPWDLP-RRAKMGEKEWY 69
           LPPGFRFHPTDEEL+ +YL  KV          I EVD+ K EPWDLP  +AK G++EWY
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 70  FFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIY-KAKALVGMKKTLVFYKGRAPKGQKT 128
           FF  RDRKYP G RTNRAT +GYWKATGKDK +  K   +VGMKKTLVFYKGRAPKG+KT
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGEKT 120

Query: 129 NWVMHEYRLE 138
           +WVMHEYRLE
Sbjct: 121 DWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=1.5e-44  Score=307.93  Aligned_cols=127  Identities=57%  Similarity=1.124  Sum_probs=97.9

Q ss_pred             CCCceeeCCCHHHHHHHHhhhhhcCCCCcc-cceeeccCCCCCCCCcccccccCCceEEEEEeccccCCCCCcccccccC
Q 018950           12 LPPGFRFHPTDEELITHYLTPKVFDGCFSA-RAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEA   90 (348)
Q Consensus        12 LPpGfRF~PTDEELI~~YL~~Kv~g~~~~~-~~I~evDly~~ePwdLP~~~~~ge~eWYFFs~r~rky~~G~R~nRat~~   90 (348)
                      |||||||+|||||||.+||++|+.+.+++. .+|.++|||.+|||+||.....++++||||+++++++.+|.|.+|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            899999999999999999999999998876 7899999999999999964445677999999999999999999999999


Q ss_pred             ceeeecCCCeeeee-CCceeeeEEEEEEeeccCCCCCCcCeEEEEEEeC
Q 018950           91 GYWKATGKDKEIYK-AKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLE  138 (348)
Q Consensus        91 GyWKatGk~k~I~~-~g~~VG~KKtLvFY~Grapkg~KT~WvMhEYrL~  138 (348)
                      |+||++|++++|.. ++.+||+|++|+||.++.+++.||+|+||||+|+
T Consensus        81 G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            99999999999998 8899999999999999889999999999999985

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	348
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		6e-46
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		7e-46
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		3e-43

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  181 bits (459), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/168 (52%), Positives = 111/168 (66%), Gaps = 2/168 (1%)
Query: 1   MEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRR 60
           +++ D   Q+ LPPGFRF+PTDEEL+  YL  K     FS + I E+DL K +PW LP +
Sbjct: 6   IQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK 65
Query: 61  AKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKG 120
           A  GEKEWYFF  RDRKYP G R NR   +GYWKATG DK I      VG+KK LVFY G
Sbjct: 66  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIG 125
Query: 121 RAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKK 168
           +APKG KTNW+MHEYRL     +  +  T  ++WV+CR+++K    +K
Sbjct: 126 KAPKGTKTNWIMHEYRLIE--PSRRNGSTKLDDWVLCRIYKKQSSAQK 171

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  181 bits (458), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 88/168 (52%), Positives = 111/168 (66%), Gaps = 2/168 (1%)
Query: 1   MEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRR 60
           +++ D   Q+ LPPGFRF+PTDEEL+  YL  K     FS + I E+DL K +PW LP +
Sbjct: 9   IQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK 68
Query: 61  AKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKG 120
           A  GEKEWYFF  RDRKYP G R NR   +GYWKATG DK I      VG+KK LVFY G
Sbjct: 69  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIG 128
Query: 121 RAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKK 168
           +APKG KTNW+MHEYRL     +  +  T  ++WV+CR+++K    +K
Sbjct: 129 KAPKGTKTNWIMHEYRLIE--PSRRNGSTKLDDWVLCRIYKKQSSAQK 174

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  172 bits (435), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 103/161 (63%), Gaps = 3/161 (1%)
Query: 5   DDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMG 64
           D + ++ LPPGFRFHPTD+EL+ HYL  K          I EVDL K +PWDLP RA  G
Sbjct: 8   DAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG 67
Query: 65  EKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPK 124
            +EWYFF  RDRKYP G R NRA   GYWKATG DK +      +G+KK LVFY G+AP+
Sbjct: 68  AREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPR 127
Query: 125 GQKTNWVMHEYRLEGKYSAYDHPKTAK---NEWVICRVFQK 162
           G KT+W+MHEYRL     A    K      ++WV+CR++ K
Sbjct: 128 GVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
1ut7_A	171	No apical meristem protein; transcription regulati	1e-110
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-108

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  317 bits (815), Expect = e-110
 Identities = 88/168 (52%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRR 60
           +++ D   Q+ LPPGFRF+PTDEEL+  YL  K     FS + I E+DL K +PW LP +
Sbjct: 6   IQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK 65

Query: 61  AKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKG 120
           A  GEKEWYFF  RDRKYP G R NR   +GYWKATG DK I      VG+KK LVFY G
Sbjct: 66  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIG 125

Query: 121 RAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKK 168
           +APKG KTNW+MHEYRL        +  T  ++WV+CR+++K    +K
Sbjct: 126 KAPKGTKTNWIMHEYRLIEPSR--RNGSTKLDDWVLCRIYKKQSSAQK 171

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  313 bits (803), Expect = e-108
 Identities = 85/167 (50%), Positives = 105/167 (62%), Gaps = 3/167 (1%)

Query: 5   DDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMG 64
           D + ++ LPPGFRFHPTD+EL+ HYL  K          I EVDL K +PWDLP RA  G
Sbjct: 8   DAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG 67

Query: 65  EKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPK 124
            +EWYFF  RDRKYP G R NRA   GYWKATG DK +      +G+KK LVFY G+AP+
Sbjct: 68  AREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPR 127

Query: 125 GQKTNWVMHEYRLEGKYSAYDHPKTA---KNEWVICRVFQKSGGGKK 168
           G KT+W+MHEYRL     A    K      ++WV+CR++ K    +K
Sbjct: 128 GVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=1.1e-59  Score=422.37  Aligned_cols=158  Identities=52%  Similarity=1.016  Sum_probs=138.1

Q ss_pred             ccCCCCCCceeeCCCHHHHHHHHhhhhhcCCCCcccceeeccCCCCCCCCcccccccCCceEEEEEeccccCCCCCcccc
Q 018950            7 QEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNR   86 (348)
Q Consensus         7 ~~~~~LPpGfRF~PTDEELI~~YL~~Kv~g~~~~~~~I~evDly~~ePwdLP~~~~~ge~eWYFFs~r~rky~~G~R~nR   86 (348)
                      ...+.|||||||||||||||.|||++|+.+.+++..+|+|+|||++|||+||+.+..|+++|||||+|++||++|.|+||
T Consensus        10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR   89 (174)
T 3ulx_A           10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR   89 (174)
T ss_dssp             CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred             ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence            56789999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             cccCceeeecCCCeeeeeCCceeeeEEEEEEeeccCCCCCCcCeEEEEEEeCCCCCCCC---CCCCCCCcEEEEEEEEcC
Q 018950           87 ATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYD---HPKTAKNEWVICRVFQKS  163 (348)
Q Consensus        87 at~~GyWKatGk~k~I~~~g~~VG~KKtLvFY~Grapkg~KT~WvMhEYrL~~~~~~~~---lp~~~~~e~VLCRVf~K~  163 (348)
                      +|++||||+||++++|..++.+||+||||+||.|++|+|.||+|+||||+|.+......   ......++|||||||+|+
T Consensus        90 ~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~  169 (174)
T 3ulx_A           90 AAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK  169 (174)
T ss_dssp             EETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred             ecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence            99999999999999999889999999999999999999999999999999987642210   111235899999999997


Q ss_pred             C
Q 018950          164 G  164 (348)
Q Consensus       164 ~  164 (348)
                      +
T Consensus       170 ~  170 (174)
T 3ulx_A          170 N  170 (174)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=2.8e-59  Score=418.67  Aligned_cols=159  Identities=54%  Similarity=0.994  Sum_probs=134.7

Q ss_pred             ccCCCCCCceeeCCCHHHHHHHHhhhhhcCCCCcccceeeccCCCCCCCCcccccccCCceEEEEEeccccCCCCCcccc
Q 018950            7 QEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNR   86 (348)
Q Consensus         7 ~~~~~LPpGfRF~PTDEELI~~YL~~Kv~g~~~~~~~I~evDly~~ePwdLP~~~~~ge~eWYFFs~r~rky~~G~R~nR   86 (348)
                      ...+.|||||||||||||||.|||++|+.+.+++..+|+++|||++|||+||+.+..|+++|||||++++||++|.|+||
T Consensus        12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R   91 (171)
T 1ut7_A           12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR   91 (171)
T ss_dssp             CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred             ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccc
Confidence            45789999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             cccCceeeecCCCeeeeeCCceeeeEEEEEEeeccCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEEcCCCC
Q 018950           87 ATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGG  166 (348)
Q Consensus        87 at~~GyWKatGk~k~I~~~g~~VG~KKtLvFY~Grapkg~KT~WvMhEYrL~~~~~~~~lp~~~~~e~VLCRVf~K~~~~  166 (348)
                      +|++||||+||++++|..++.+||+||+|+||+|++|+|.||+|+||||+|.....  .......++|||||||+|+...
T Consensus        92 ~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~--~~~~~~~~~~VlCrv~~k~~~~  169 (171)
T 1ut7_A           92 VAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR--RNGSTKLDDWVLCRIYKKQSSA  169 (171)
T ss_dssp             EETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------CCEEEEEEEECC---
T ss_pred             cCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc--ccCcccCCCEEEEEEEEcCCCC
Confidence            99999999999999999989999999999999999999999999999999987641  1112345899999999998654


Q ss_pred             C
Q 018950          167 K  167 (348)
Q Consensus       167 k  167 (348)
                      +
T Consensus       170 ~  170 (171)
T 1ut7_A          170 Q  170 (171)
T ss_dssp             -
T ss_pred             C
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	2e-76

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  230 bits (587), Expect = 2e-76
 Identities = 87/162 (53%), Positives = 109/162 (67%), Gaps = 2/162 (1%)

Query: 1   MEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRR 60
           +++ D   Q+ LPPGFRF+PTDEEL+  YL  K     FS + I E+DL K +PW LP +
Sbjct: 6   IQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK 65

Query: 61  AKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKG 120
           A  GEKEWYFF  RDRKYP G R NR   +GYWKATG DK I      VG+KK LVFY G
Sbjct: 66  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIG 125

Query: 121 RAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQK 162
           +APKG KTNW+MHEYRL     +  +  T  ++WV+CR+++K
Sbjct: 126 KAPKGTKTNWIMHEYRLIE--PSRRNGSTKLDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.8e-55  Score=385.11  Aligned_cols=157  Identities=55%  Similarity=1.009  Sum_probs=134.0

Q ss_pred             ccccCCCCCCceeeCCCHHHHHHHHhhhhhcCCCCcccceeeccCCCCCCCCcccccccCCceEEEEEeccccCCCCCcc
Q 018950            5 DDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRT   84 (348)
Q Consensus         5 ~~~~~~~LPpGfRF~PTDEELI~~YL~~Kv~g~~~~~~~I~evDly~~ePwdLP~~~~~ge~eWYFFs~r~rky~~G~R~   84 (348)
                      ....++.|||||||+|||||||.|||++|+.+.+++..+|+++|||++|||+||+....++++||||+++.+++++|.|.
T Consensus        10 ~~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~   89 (166)
T d1ut7a_          10 DPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRP   89 (166)
T ss_dssp             --CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------C
T ss_pred             CccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCcc
Confidence            34578999999999999999999999999999999999999999999999999998888889999999999999999999


Q ss_pred             cccccCceeeecCCCeeeeeCCceeeeEEEEEEeeccCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEEcC
Q 018950           85 NRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKS  163 (348)
Q Consensus        85 nRat~~GyWKatGk~k~I~~~g~~VG~KKtLvFY~Grapkg~KT~WvMhEYrL~~~~~~~~lp~~~~~e~VLCRVf~K~  163 (348)
                      +|+|++|+||++|+++.|..++.+||+||+|+||+|+++++.+|+|+||||+|.+....  ......++|||||||+|.
T Consensus        90 ~R~~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~--~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_          90 NRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR--NGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             CEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------CCEEEEEEEECC
T ss_pred             ccccCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccc--cCccccCCEEEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999876421  112345899999999984