Citrus Sinensis ID: 018962

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35

MYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

ccccccccccccHHHHHHcccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHEEEccccccccccccccccccccccccccccccccccEEEccccEEEEEEccccccccEEEcccccccHHHHHHHcccccccccccccEEEccccccccHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc

cHHHHcccccccHHHHHHcccccccccccccccEEccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccHHcccHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccHHHHHHcccccccccccEEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc

myekkqgkksfwlpYIRELDrqrgrgqlavespllwsetelayltgsptKAEILERAEGIKREYNELDTVWFMAgslfqqypydipteaFTFEIFKQAFVAVQSCVVHLQKVSLARRFalvplgppllaYSSKCKAMLAAVDDAVQLVVdrpykagesivvwcgpqpnskllinygfvdednpydRLVVEAAlntedpqyqdKRMVAQRNGKLSVQVFHVHAGrekeaisdmlpylrlgyvsdtsEMQSVIsslgpicpvspcmeRAVLDQLADYFKARlagypatlsedeamltdynlhpkkrVATQLVRMEKKMLNACLQVTADMIMllpdvtvspcpapyaplln

myekkqgkksfwlpyIRELDRQRGRGQLAVESPLLWSETElayltgsptkaEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGEsivvwcgpqpNSKLLINYGFVDEDNPYDRLVVEAALntedpqyqDKRMVAQRNGKLSVQVFHVHAGrekeaisdmlPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTvspcpapyaplln

MYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKamlaavddavqlvvdRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

**********FWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNT**********VAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCP********

*Y*****KKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLS************PKKRVATQLVRMEKKMLNACLQVTAD**********************

********KSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

M*****GKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYA****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		348	2.2.26 [Sep-21-2011]
B7ZUF3		582	Histone-lysine N-methyltr	yes	no	0.905	0.541	0.236	1e-15
Q86TU7		594	Histone-lysine N-methyltr	yes	no	0.864	0.506	0.234	3e-15
A9X1D0		595	Histone-lysine N-methyltr	N/A	no	0.867	0.507	0.233	9e-15
B0VX69		595	Histone-lysine N-methyltr	yes	no	0.864	0.505	0.240	1e-14
B1MTJ4		595	Histone-lysine N-methyltr	N/A	no	0.864	0.505	0.240	1e-14
C1FXW2		589	Histone-lysine N-methyltr	N/A	no	0.864	0.511	0.240	1e-14
B5FW36		595	Histone-lysine N-methyltr	N/A	no	0.864	0.505	0.240	2e-14
B2KI88		594	Histone-lysine N-methyltr	N/A	no	0.867	0.508	0.236	5e-14
E2RBS6		588	Histone-lysine N-methyltr	yes	no	0.867	0.513	0.239	6e-14
Q5ZML9		593	Histone-lysine N-methyltr	yes	no	0.856	0.502	0.236	4e-13

>sp\|B7ZUF3\|SETD3_XENTR Histone-lysine N-methyltransferase setd3 OS=Xenopus tropicalis GN=setd3 PE=2 SV=1	Back alignment and function desciption

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 157/351 (44%), Gaps = 36/351 (10%)

Query: 9   KSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELD 68
            SFWLPYI+ L  +        ++PL ++E E+ YL  +    ++  + +   R+Y    
Sbjct: 169 NSFWLPYIKTLPNE-------YDTPLYFNEDEVQYLQSTQAILDVFSQYKNTARQY---- 217

Query: 69  TVWFMAGSLFQQYPY--DIP-TEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFALVPLG 124
             +F    + Q +P    +P  ++FTF+ ++ A  +V +    +     +R   AL+PL 
Sbjct: 218 -AYFY--KVIQTHPNANKLPLKDSFTFDDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLW 274

Query: 125 PPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPY 184
                 +          DD  + V  + +K+GE I ++ G + N++ +I+ GF  E+N +
Sbjct: 275 DMCNHTNGLITTGYNLEDDRCECVALQDFKSGEQIYIFYGTRSNAEFVIHNGFFFENNLH 334

Query: 185 DRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRL------ 238
           DR+ ++  ++  D  Y  K  V  R G  +  VF +H   E    + +L +LR+      
Sbjct: 335 DRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHV-TEPPISAQLLAFLRVFCMNED 393

Query: 239 ---GYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKAR----LAGYPATLSEDE 291
              G++     +  + +      PVS   E  +  +L  + +AR    L  Y  T+ +D 
Sbjct: 394 ELKGHLIGDHAIDKIFTLGNSEFPVS--WENEI--KLWTFLEARASLLLKTYKTTVEDDN 449

Query: 292 AMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAP 342
            +L   ++     +A +L R+EK++L   L+  +D   L    +    P P
Sbjct: 450 KVLEQPDMTFHSAMAIKLRRVEKEILEKALKSASDNRKLYSKNSEEGTPLP 500

Histone methyltransferase that methylates 'Lys-36' of histone H3 (H3K36me). H3 'Lys-36' methylation represents a specific tag for epigenetic transcriptional activation.
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp\|Q86TU7\|SETD3_HUMAN Histone-lysine N-methyltransferase setd3 OS=Homo sapiens GN=SETD3 PE=1 SV=1	Back alignment and function description

>sp\|A9X1D0\|SETD3_PAPAN Histone-lysine N-methyltransferase setd3 OS=Papio anubis GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B0VX69\|SETD3_CALJA Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|B1MTJ4\|SETD3_CALMO Histone-lysine N-methyltransferase setd3 OS=Callicebus moloch GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|C1FXW2\|SETD3_DASNO Histone-lysine N-methyltransferase setd3 OS=Dasypus novemcinctus GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B5FW36\|SETD3_OTOGA Histone-lysine N-methyltransferase setd3 OS=Otolemur garnettii GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B2KI88\|SETD3_RHIFE Histone-lysine N-methyltransferase setd3 OS=Rhinolophus ferrumequinum GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|E2RBS6\|SETD3_CANFA Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|Q5ZML9\|SETD3_CHICK Histone-lysine N-methyltransferase setd3 OS=Gallus gallus GN=SETD3 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		348
225452167		509	PREDICTED: histone-lysine N-methyltransf	1.0	0.683	0.879	0.0
359488614		515	PREDICTED: histone-lysine N-methyltransf	1.0	0.675	0.879	0.0
296090251		428	unnamed protein product [Vitis vinifera]	0.997	0.810	0.881	0.0
224117488		502	SET domain protein [Populus trichocarpa]	0.997	0.691	0.864	1e-178
449455876		521	PREDICTED: histone-lysine N-methyltransf	0.997	0.666	0.858	1e-177
356571407		502	PREDICTED: probable ribulose-1,5 bisphos	0.997	0.691	0.829	1e-173
356511552		503	PREDICTED: probable ribulose-1,5 bisphos	0.997	0.689	0.827	1e-171
357497055		501	SET domain protein [Medicago truncatula]	0.997	0.692	0.818	1e-171
22326803		514	Rubisco methyltransferase family protein	1.0	0.677	0.807	1e-169
297807453		516	SET domain-containing protein [Arabidops	1.0	0.674	0.804	1e-168

>gi\|225452167\|ref\|XP_002264334.1\| PREDICTED: histone-lysine N-methyltransferase setd3 isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/348 (87%), Positives = 323/348 (92%)

Query: 1   MYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGI 60
           MYEKKQGKKSFW PYIRELDRQRGRGQLAVESPLLWSE+ELAYLTGSPTKAE+LERAEGI
Sbjct: 162 MYEKKQGKKSFWYPYIRELDRQRGRGQLAVESPLLWSESELAYLTGSPTKAEVLERAEGI 221

Query: 61  KREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFAL 120
           KREYNELDTVWFMAGSLFQQYPYDIPTEAF FEIFKQAFVA+QSCVVHLQKVSLARRFAL
Sbjct: 222 KREYNELDTVWFMAGSLFQQYPYDIPTEAFPFEIFKQAFVAIQSCVVHLQKVSLARRFAL 281

Query: 121 VPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDE 180
           VPLGPPLLAY S CKAMLAAVD +VQLVVDRPYKAGESIVVWCGPQPNSKLL+NYGFVDE
Sbjct: 282 VPLGPPLLAYRSNCKAMLAAVDGSVQLVVDRPYKAGESIVVWCGPQPNSKLLLNYGFVDE 341

Query: 181 DNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGY 240
           DN YDR+VVEAALNTEDPQYQDKRMVAQRNGKL+VQ FHV  G+E+EA+SDMLPYLRLGY
Sbjct: 342 DNSYDRIVVEAALNTEDPQYQDKRMVAQRNGKLTVQKFHVSVGKEREAVSDMLPYLRLGY 401

Query: 241 VSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLH 300
           VSD SEMQSVISS GPICPVSPCMERAVLDQL DYF+ RLAGYP T+SEDE +L D NL+
Sbjct: 402 VSDPSEMQSVISSQGPICPVSPCMERAVLDQLVDYFERRLAGYPTTMSEDECLLADSNLN 461

Query: 301 PKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN 348
           PKK VATQLVR+EKKMLNACL+ T D+I  LPD TVSPCPAPY PLL 
Sbjct: 462 PKKLVATQLVRLEKKMLNACLKATVDLINQLPDHTVSPCPAPYTPLLK 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359488614\|ref\|XP_003633789.1\| PREDICTED: histone-lysine N-methyltransferase setd3 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296090251\|emb\|CBI40070.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224117488\|ref\|XP_002331687.1\| SET domain protein [Populus trichocarpa] gi\|222874165\|gb\|EEF11296.1\| SET domain protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449455876\|ref\|XP_004145676.1\| PREDICTED: histone-lysine N-methyltransferase setd3-like [Cucumis sativus] gi\|449492872\|ref\|XP_004159127.1\| PREDICTED: histone-lysine N-methyltransferase setd3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356571407\|ref\|XP_003553868.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like isoform 1 [Glycine max] gi\|356571409\|ref\|XP_003553869.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356511552\|ref\|XP_003524489.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|357497055\|ref\|XP_003618816.1\| SET domain protein [Medicago truncatula] gi\|355493831\|gb\|AES75034.1\| SET domain protein [Medicago truncatula]	Back alignment and taxonomy information

>gi|22326803|ref|NP_196930.2| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|30684815|ref|NP_851038.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|42573363|ref|NP_974778.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|17473570|gb|AAL38260.1| putative protein [Arabidopsis thaliana] gi|23297671|gb|AAN13005.1| unknown protein [Arabidopsis thaliana] gi|332004624|gb|AED92007.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|332004625|gb|AED92008.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|332004626|gb|AED92009.1| Rubisco methyltransferase family protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297807453\|ref\|XP_002871610.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297317447\|gb\|EFH47869.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		348
TAIR\|locus:2145663		514	AT5G14260 "AT5G14260" [Arabido	0.997	0.675	0.775	1.2e-147
TAIR\|locus:2077342		504	AT3G07670 [Arabidopsis thalian	0.839	0.579	0.277	8.9e-14
UNIPROTKB\|Q86TU7		594	SETD3 "Histone-lysine N-methyl	0.882	0.516	0.223	1.8e-12
UNIPROTKB\|F6R2J7		594	SETD3 "Uncharacterized protein	0.864	0.506	0.231	2.4e-12
UNIPROTKB\|F1SAQ4		595	SETD3 "Uncharacterized protein	0.862	0.504	0.234	4.1e-12
UNIPROTKB\|A9X1D0		595	SETD3 "Histone-lysine N-methyl	0.882	0.515	0.223	4.1e-12
UNIPROTKB\|B0VX69		595	SETD3 "Histone-lysine N-methyl	0.882	0.515	0.223	4.1e-12
UNIPROTKB\|B7ZUF3		582	setd3 "Histone-lysine N-methyl	0.899	0.537	0.236	5.1e-12
UNIPROTKB\|B1MTJ4		595	SETD3 "Histone-lysine N-methyl	0.882	0.515	0.223	5.3e-12
UNIPROTKB\|C1FXW2		589	SETD3 "Histone-lysine N-methyl	0.882	0.521	0.226	6.9e-12

TAIR\|locus:2145663 AT5G14260 "AT5G14260" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1442 (512.7 bits), Expect = 1.2e-147, P = 1.2e-147
 Identities = 269/347 (77%), Positives = 297/347 (85%)

Query:     1 MYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGI 60
             MYEKKQGKKS W PYIRELDRQRGRGQL  ESPLLWSE EL YLTGSPTKAE+LERAEGI
Sbjct:   167 MYEKKQGKKSVWYPYIRELDRQRGRGQLDAESPLLWSEAELDYLTGSPTKAEVLERAEGI 226

Query:    61 KREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFAL 120
             KREYNELDTVWFMAGSLFQQYP+DIPTEAF+FEIFKQAFVA+QSCVVHLQ V LARRFAL
Sbjct:   227 KREYNELDTVWFMAGSLFQQYPFDIPTEAFSFEIFKQAFVAIQSCVVHLQNVGLARRFAL 286

Query:   121 VPLGPPLLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVVWCGPQPNSKLLINYGFVDE 180
             VPLGPPLLAY S CK               RPYKAG+ IVVWCGPQPN+KLL+NYGFVDE
Sbjct:   287 VPLGPPLLAYCSNCKAMLTAVDGAVELVVDRPYKAGDPIVVWCGPQPNAKLLLNYGFVDE 346

Query:   181 DNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGY 240
             DNPYDR++VEAALNTEDPQYQDKRMVAQRNGKLS QVF V  G+E+EA+ DMLPYLRLGY
Sbjct:   347 DNPYDRVIVEAALNTEDPQYQDKRMVAQRNGKLSQQVFQVRVGKEREAVQDMLPYLRLGY 406

Query:   241 VSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLH 300
             +SD SEMQSVISS GP+CP+SPCMERAVLDQLA+YF  RL+GYP T  ED+A+L D +L 
Sbjct:   407 MSDPSEMQSVISSQGPVCPMSPCMERAVLDQLANYFMRRLSGYPTTPKEDDALLADPSLS 466

Query:   301 PKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLL 347
             P+KRVAT+LV++EKK+L ACL  T D++  LPD  +SPCPAPYAP L
Sbjct:   467 PRKRVATRLVQLEKKILVACLTTTVDLLNQLPDTAISPCPAPYAPSL 513

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR\|locus:2077342 AT3G07670 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F6R2J7 SETD3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SAQ4 SETD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)]	Back alignment and assigned GO terms

UNIPROTKB\|B0VX69 SETD3 "Histone-lysine N-methyltransferase setd3" [Callithrix jacchus (taxid:9483)]	Back alignment and assigned GO terms

UNIPROTKB\|B7ZUF3 setd3 "Histone-lysine N-methyltransferase setd3" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|B1MTJ4 SETD3 "Histone-lysine N-methyltransferase setd3" [Callicebus moloch (taxid:9523)]	Back alignment and assigned GO terms

UNIPROTKB\|C1FXW2 SETD3 "Histone-lysine N-methyltransferase setd3" [Dasypus novemcinctus (taxid:9361)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		348
pfam09273		128	pfam09273, Rubis-subs-bind, Rubisco LSMT substrate	8e-29

>gnl\|CDD\|220161 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate-binding	Back alignment and domain information

 Score =  107 bits (270), Expect = 8e-29
 Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 7/130 (5%)

Query: 193 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVIS 252
           L+  DP Y+DK  + +RNG L    F +          ++L YLRL  +SD         
Sbjct: 1   LSPSDPLYEDKLQLLERNGLLENGNFTLGIDGPPSW--ELLAYLRLLCLSDEELTAWKSV 58

Query: 253 SLGPIC-----PVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVAT 307
            LG +      P+SP  E   L  L    K  L+ YP TL EDEA+L   NL  + R+A 
Sbjct: 59  LLGAVIGHKEAPLSPENEEKALQFLEKLCKLLLSEYPTTLEEDEALLKKGNLSEQLRLAV 118

Query: 308 QLVRMEKKML 317
           +L   EK++L
Sbjct: 119 RLRLGEKRIL 128

Members of this family adopt a multihelical structure, with an irregular array of long and short alpha-helices. They allow binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		348
KOG1337		472	consensus N-methyltransferase [General function pr	100.0
KOG1338		466	consensus Uncharacterized conserved protein [Funct	99.92
PF09273		128	Rubis-subs-bind: Rubisco LSMT substrate-binding; I	99.82
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	98.98
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	97.94
KOG1085		392	consensus Predicted methyltransferase (contains a	94.59
KOG2589		453	consensus Histone tail methylase [Chromatin struct	94.57
KOG1080		1005	consensus Histone H3 (Lys4) methyltransferase comp	85.56
KOG4442		729	consensus Clathrin coat binding protein/Huntingtin	82.17

>KOG1337 consensus N-methyltransferase [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=4e-35  Score=290.20  Aligned_cols=318  Identities=33%  Similarity=0.429  Sum_probs=252.0

Q ss_pred             cccccCCCCCChHhHHhcCcccCCCCcccCCCCCCCHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 018962            2 YEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQY   81 (348)
Q Consensus         2 ~Er~~g~~S~w~pY~~~LP~~~~~~~~~~~~pl~w~~~el~~L~gs~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   81 (348)
                      +|...+..|+|+||+..||.       .+++|++|...++..|.+++.+..+..+++.++..+..+.+++......+..+
T Consensus       120 ~~~~~~~~s~w~~~i~~l~~-------~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (472)
T KOG1337|consen  120 LEWAHGEISKWKPYISTLPS-------QYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVLQSHPSLFGSD  192 (472)
T ss_pred             Hhhhccccccchhhhhhchh-------hcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHHHhcccccccc
Confidence            56777888999999999999       57999999999999999999999999998888887777665443333333322


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhhhceeecccc------ccccceeeeecCCCCCCCCCccceeEeeeCCeEEEEEeccCCC
Q 018962           82 PYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV------SLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKA  155 (348)
Q Consensus        82 ~~~~~~~~~t~~~f~wA~~~v~SRa~~~~~~------~~~~~~~LvP~~D~~Nh~~~~~~~~~~~~~~~~~~~a~~~~~~  155 (348)
                      ..    +.+|+++|.||+++|.||+|+.+..      +.....+|+|++||.||......+.++..++.+.+++.+++++
T Consensus       193 ~~----d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~  268 (472)
T KOG1337|consen  193 LF----DTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSA  268 (472)
T ss_pred             cc----CccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecC
Confidence            22    2389999999999999999987532      1124579999999999754444666677777999999999999


Q ss_pred             CCeEEeccCCCCcHHHhHhcCcccCCCCCCeEEEEeecCCCCCChHHHHHHHHHcCCCccceEEEEeCCcccchhchHHH
Q 018962          156 GESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPY  235 (348)
Q Consensus       156 Geev~~~YG~~sN~~lL~~YGFv~~~Np~D~v~l~~~~~~~d~~~~~K~~~l~~~g~~~~~~f~l~~~~~~~~~~~ll~~  235 (348)
                      |+||||+||+++|++||++|||+.++||+|+|.+.+.+...++.+..|.+.+..++......|.+.......  .+++..
T Consensus       269 geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  346 (472)
T KOG1337|consen  269 GEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPV--SEMLLL  346 (472)
T ss_pred             CCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCch--hhhhhh
Confidence            999999999999999999999999999999999999999999999999999999998888888876654322  233333


Q ss_pred             HHhhcCCC---hHHHHHHHH----h---cCCCCCCChhhHHHHHHHHHHH-HHHHHhcCCCCHHHHHHhhccCCCChhHH
Q 018962          236 LRLGYVSD---TSEMQSVIS----S---LGPICPVSPCMERAVLDQLADY-FKARLAGYPATLSEDEAMLTDYNLHPKKR  304 (348)
Q Consensus       236 lRv~~~~~---~~el~~~~~----~---~~~~~~~s~~~E~~~~~~L~~~-l~~~L~~y~tt~eeD~~~L~~~~~s~r~~  304 (348)
                      .++..+.+   ..++.....    .   .....+++..+|...+..+... +...+..+.+++++++..+.+..++.+..
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~~l~~~~~  426 (472)
T KOG1337|consen  347 FLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDNILSKLLE  426 (472)
T ss_pred             hhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhcccccchhhh
Confidence            33222221   112221111    1   1245677888999999999998 88888899999999999998877888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018962          305 VATQLVRMEKKMLNACLQVTADMIMLLP  332 (348)
Q Consensus       305 ~A~~~R~~eK~IL~~~l~~l~~~~~~l~  332 (348)
                      ++..++..+++||.+.+..+..+...++
T Consensus       427 ~~~k~~~~~~~iL~~~~~~~~~~~~~l~  454 (472)
T KOG1337|consen  427 LLEKLRTLEKRILEKSLKLLRSRLKLLH  454 (472)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999998886555554

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]	Back alignment and domain information

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		348
3smt_A		497	Crystal Structure Of Human Set Domain-Containing Pr		2e-14
1mlv_A		444	Structure And Catalytic Mechanism Of A Set Domain P		5e-06
2h21_A		440	Structure Of Rubisco Lsmt Bound To Adomet Length =		5e-06

>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497

Back alignment and structure

Iteration: 1

Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 74/329 (22%), Positives = 146/329 (44%), Gaps = 28/329 (8%) Query: 10 SFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDT 69 SFW PYI+ L + ++PL + E E+ YL + ++ + + R+Y Sbjct: 169 SFWQPYIQTLPSE-------YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQY----- 216 Query: 70 VWFMAGSLFQQYPY--DIP-TEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFALVPLGP 125 +F + Q +P+ +P ++FT+E ++ A +V + + +R AL+PL Sbjct: 217 AYFY--KVIQTHPHANKLPLKDSFTYEDYRWAVSSVXTRQNQIPTEDGSRVTLALIPLWD 274 Query: 126 PLLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYD 185 + + ++AGE I ++ G + N++ +I+ GF ++N +D Sbjct: 275 XCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHD 334 Query: 186 RLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRL------- 238 R+ ++ ++ D Y K V R G + VF +H E + +L +LR+ Sbjct: 335 RVKIKLGVSKSDRLYAXKAEVLARAGIPTSSVFALHFT-EPPISAQLLAFLRVFCXTEEE 393 Query: 239 --GYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTD 296 ++ S + + + PVS E + L D L Y T+ ED+++L + Sbjct: 394 LKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKN 453 Query: 297 YNLHPKKRVATQLVRMEKKMLNACLQVTA 325 ++L + + A +L EK++L ++ A Sbjct: 454 HDLSVRAKXAIKLRLGEKEILEKAVKSAA 482

PyMOL of 3smt

>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444

Back alignment and structure

>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		348
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	2e-60
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	2e-54
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	3e-44
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497	Back alignment and structure

 Score =  200 bits (510), Expect = 2e-60
 Identities = 74/338 (21%), Positives = 146/338 (43%), Gaps = 23/338 (6%)

Query: 1   MYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGI 60
           + E+     SFW PYI+ L  +        ++PL + E E+ YL  +    ++  + +  
Sbjct: 161 LCERA-SPNSFWQPYIQTLPSE-------YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNT 212

Query: 61  KREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFA 119
            R+Y     V                 ++FT+E ++ A  +V +    +     +R   A
Sbjct: 213 ARQYAYFYKVIQT----HPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLA 268

Query: 120 LVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVD 179
           L+PL       +          DD  + V  + ++AGE I ++ G + N++ +I+ GF  
Sbjct: 269 LIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFF 328

Query: 180 EDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLG 239
           ++N +DR+ ++  ++  D  Y  K  V  R G  +  VF +H        + +L +LR+ 
Sbjct: 329 DNNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTEP-PISAQLLAFLRVF 387

Query: 240 YVSD---------TSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSED 290
            +++          S +  + +      PVS   E  +   L D     L  Y  T+ ED
Sbjct: 388 CMTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEED 447

Query: 291 EAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMI 328
           +++L +++L  + ++A +L   EK++L   ++  A   
Sbjct: 448 KSVLKNHDLSVRAKMAIKLRLGEKEILEKAVKSAAVNR 485

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		348
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	100.0
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	100.0
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	100.0
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	98.44
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	98.41
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	98.21
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	97.85
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	97.11
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	96.94
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	96.61
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	96.59
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	96.09
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	96.07
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	96.04
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	95.9
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	95.77
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	95.62
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	95.13
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	94.82
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	94.65
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	94.39
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	94.31
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	93.4
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	93.28
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	92.03
3ihx_A		152	PR domain zinc finger protein 10; PRDM10, methyltr	85.77
3ray_A		237	PR domain-containing protein 11; structural genomi	83.33

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=1.8e-60  Score=471.11  Aligned_cols=316  Identities=24%  Similarity=0.373  Sum_probs=275.1

Q ss_pred             CcccccCCCCCChHhHHhcCcccCCCCcccCCCCCCCHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 018962            1 MYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQ   80 (348)
Q Consensus         1 ~~Er~~g~~S~w~pY~~~LP~~~~~~~~~~~~pl~w~~~el~~L~gs~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   80 (348)
                      |||+. |+.|+|+||+++||+       .+++|++|+++|+++|+||++...+.++.+.+.++|..+.+       ++..
T Consensus       161 l~E~~-~~~S~w~pYl~~LP~-------~~~~pl~w~~eel~~L~gt~l~~~v~~~~~~~~~~~~~~~~-------~~~~  225 (497)
T 3smt_A          161 LCERA-SPNSFWQPYIQTLPS-------EYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYK-------VIQT  225 (497)
T ss_dssp             HHHHT-CTTCTTHHHHTTSCS-------CCCSGGGCCHHHHHTTSSSSHHHHHHHHHHHHHHHHHHHHH-------HC--
T ss_pred             HHHhc-CCCCchHHHHHhCCC-------CCCCCCcCCHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHH-------HHHh
Confidence            57884 899999999999999       58999999999999999999999998888888889987754       3444


Q ss_pred             CCCC--CC-CCCCCHHHHHHHHHHhhhceeeccccccc-cceeeeecCCCCCCCCCccceeEeeeCCeEEEEEeccCCCC
Q 018962           81 YPYD--IP-TEAFTFEIFKQAFVAVQSCVVHLQKVSLA-RRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAG  156 (348)
Q Consensus        81 ~~~~--~~-~~~~t~~~f~wA~~~v~SRa~~~~~~~~~-~~~~LvP~~D~~Nh~~~~~~~~~~~~~~~~~~~a~~~~~~G  156 (348)
                      +|..  ++ ...+|+++|.||+++|+||+|.++..++. ...+|||++||+||++..+++.|+.+++.+.+++.++|++|
T Consensus       226 ~p~~~~~~~~~~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~a~~~i~~G  305 (497)
T 3smt_A          226 HPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAG  305 (497)
T ss_dssp             --CCCCSTTTTCCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECSCSEEEEEETTTTEEEEEESSCBCTT
T ss_pred             CcccccCccccccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCCcccceeeeccCCeEEEEeCCccCCC
Confidence            4432  22 45799999999999999999998643322 25799999999998766667788888899999999999999


Q ss_pred             CeEEeccCCCCcHHHhHhcCcccCCCCCCeEEEEeecCCCCCChHHHHHHHHHcCCCccceEEEEeCCcccchhchHHHH
Q 018962          157 ESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYL  236 (348)
Q Consensus       157 eev~~~YG~~sN~~lL~~YGFv~~~Np~D~v~l~~~~~~~d~~~~~K~~~l~~~g~~~~~~f~l~~~~~~~~~~~ll~~l  236 (348)
                      |||||+||+++|++||++|||++++||+|+|.|.+.++.+||++..|.++|+.+|+.....|.+..++ .+++.+|++++
T Consensus       306 eei~isYG~~~n~~Ll~~YGFv~~~Np~D~v~l~l~~~~~d~l~~~K~~~L~~~gl~~~~~f~l~~~~-~~~~~~Ll~~L  384 (497)
T 3smt_A          306 EQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTE-PPISAQLLAFL  384 (497)
T ss_dssp             CEEEECCCSCCHHHHHHHHSCCCTTCTTCEEEEEEECCTTSTTHHHHHHHHHHTTCCSEEEEEEESSS-SCSCHHHHHHH
T ss_pred             CEEEEeCCCCChHHHHHHCCCCCCCCCCceEEEEecCCCcchhHHHHHHHHHHcCCCccceeeeecCC-CCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888888887654 46789999999


Q ss_pred             HhhcCCChHHHHHHHHhc----------CCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCHHHHHHhhccCCCChhHHHH
Q 018962          237 RLGYVSDTSEMQSVISSL----------GPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVA  306 (348)
Q Consensus       237 Rv~~~~~~~el~~~~~~~----------~~~~~~s~~~E~~~~~~L~~~l~~~L~~y~tt~eeD~~~L~~~~~s~r~~~A  306 (348)
                      |+++++ ++++..+..+.          ....|+|.+||.++++.|...|+.+|+.|+||+++|+++|++..++.|+++|
T Consensus       385 Rvl~~~-~~el~~~~~~~~~~~~~~~l~~~~~piS~~nE~~v~~~L~~~~~~~L~~Y~TtieeDe~lL~~~~ls~r~r~A  463 (497)
T 3smt_A          385 RVFCMT-EEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKMA  463 (497)
T ss_dssp             HHHTCC-HHHHHHHHHTCSSSCTTTTTTCTTSCSCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHTTCTTSCHHHHHH
T ss_pred             HHHhCC-HHHHHHHhcccchhhhhhhcccccCCCChhhHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHhcCCCCHHHHHH
Confidence            999985 67888875532          1346899999999999999999999999999999999999888889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018962          307 TQLVRMEKKMLNACLQVTADMIMLLPD  333 (348)
Q Consensus       307 ~~~R~~eK~IL~~~l~~l~~~~~~l~~  333 (348)
                      +++|+|||+||+++++.++.....+..
T Consensus       464 v~vR~gEK~IL~~~l~~~~~~~~~~~~  490 (497)
T 3smt_A          464 IKLRLGEKEILEKAVKSAAVNREYYRQ  490 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888775543

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}	Back alignment and structure

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		348
d2h2ja1		176	a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, sub	3e-28
d2h2ja2		261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	7e-22

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176	Back information, alignment and structure


class: All alpha proteins
fold: RuBisCo LSMT C-terminal, substrate-binding domain
superfamily: RuBisCo LSMT C-terminal, substrate-binding domain
family: RuBisCo LSMT C-terminal, substrate-binding domain
domain: RuBisCo LSMT C-terminal, substrate-binding domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  106 bits (265), Expect = 3e-28
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 193 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSE--MQSV 250
           ++  DP + DK  VA+ NG      F +   R       +LPYLRL  +  T    ++S+
Sbjct: 8   ISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPP--GLLPYLRLVALGGTDAFLLESL 65

Query: 251 ISS--LGPI-CPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVAT 307
                 G +   VS   E  +   + +  K+ LAGY  T+ +D  +  + NL  +  +A 
Sbjct: 66  FRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELK-EGNLDSRLAIAV 124

Query: 308 QLVRMEKKMLNACLQ 322
            +   EK +L     
Sbjct: 125 GIREGEKMVLQQIDG 139

PyMOL of d2h2ja1

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		348
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	99.96
d2h2ja1		176	RuBisCo LSMT C-terminal, substrate-binding domain	99.89
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	97.74
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	96.82
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	95.57
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	95.5

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.96  E-value=9e-30  Score=229.74  Aligned_cols=164  Identities=23%  Similarity=0.319  Sum_probs=133.4

Q ss_pred             cccccCCCCCChHhHHhcCcccCCCCcccCCCCCCCHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 018962            2 YEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQY   81 (348)
Q Consensus         2 ~Er~~g~~S~w~pY~~~LP~~~~~~~~~~~~pl~w~~~el~~L~gs~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   81 (348)
                      +|+ .+..|.|+||+++||+       ...+|++|+..+++.|+++.+...+....+.++++|.++...      ++...
T Consensus        85 ~e~-~~~~s~~~~y~~~lp~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  150 (261)
T d2h2ja2          85 RER-SREDSVWKHYFGILPQ-------ETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQE------IILPN  150 (261)
T ss_dssp             HHH-HCTTCTTHHHHTTSCS-------CCSCGGGCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHH------TTTTT
T ss_pred             HHH-hCCCCchhhhhhcccc-------ccCCcccCCHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH------HHhhh
Confidence            466 6899999999999999       579999999999999999999999999999999999888653      23333


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhhhceeeccccccccceeeeecCCCCCCCCCccceeE-----------eeeCCeEEEEEe
Q 018962           82 PYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAML-----------AAVDDAVQLVVD  150 (348)
Q Consensus        82 ~~~~~~~~~t~~~f~wA~~~v~SRa~~~~~~~~~~~~~LvP~~D~~Nh~~~~~~~~~-----------~~~~~~~~~~a~  150 (348)
                      +. .....++++.|.||+++|.||+|..++.   ...+|+|++||+||.+. .|+.+           ...++.++++|.
T Consensus       151 ~~-~~~~~~~~~~~~~a~~~v~sr~~~~~~~---~~~~l~P~~d~~NHsc~-pn~~~~~~~~~~~~~~~~~~~~~~l~A~  225 (261)
T d2h2ja2         151 KR-LFPDPVTLDDFFWAFGILRSRAFSRLRN---ENLVVVPMADLINHSAG-VTTEDHAYEVKGAAGLFSWDYLFSLKSP  225 (261)
T ss_dssp             TT-TCCSCCCHHHHHHHHHHHHHHSBCCC------CCBCCTTGGGCEECSS-CCSCCCCCC-----------CEEEEECS
T ss_pred             hh-hccCccCHHHHHHHHHHhhccccccccc---ccccchhhhHHhhcCCC-CCcccccccccCcccccCCCcEEEEEEC
Confidence            32 2345689999999999999999988532   34699999999998543 23222           224567999999


Q ss_pred             ccCCCCCeEEeccCC-CCcHHHhHhcCcccCC-CCC
Q 018962          151 RPYKAGESIVVWCGP-QPNSKLLINYGFVDED-NPY  184 (348)
Q Consensus       151 ~~~~~Geev~~~YG~-~sN~~lL~~YGFv~~~-Np~  184 (348)
                      |+|++||||||+||+ ++|++||.+||||+++ |||
T Consensus       226 r~I~~GEEI~isYG~~~~n~~ll~~yGFv~~~~n~~  261 (261)
T d2h2ja2         226 LSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH  261 (261)
T ss_dssp             SCCCTTSBCEECSCSSCCHHHHHHHSSCCCSCGGGC
T ss_pred             CCCCCCCEEEEecCCCCCHHHHHHhCCCCCCCCCCC
Confidence            999999999999995 6999999999999876 986

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure