Citrus Sinensis ID: 018967
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 348 | 2.2.26 [Sep-21-2011] | |||||||
| Q8H1Y0 | 393 | Pyruvate dehydrogenase E1 | yes | no | 0.968 | 0.857 | 0.824 | 1e-172 | |
| P52902 | 397 | Pyruvate dehydrogenase E1 | N/A | no | 0.925 | 0.811 | 0.866 | 1e-172 | |
| P52901 | 389 | Pyruvate dehydrogenase E1 | no | no | 0.962 | 0.861 | 0.838 | 1e-172 | |
| P52903 | 391 | Pyruvate dehydrogenase E1 | N/A | no | 0.956 | 0.851 | 0.805 | 1e-166 | |
| Q6Z5N4 | 390 | Pyruvate dehydrogenase E1 | yes | no | 0.916 | 0.817 | 0.833 | 1e-164 | |
| Q654V6 | 398 | Pyruvate dehydrogenase E1 | no | no | 0.899 | 0.786 | 0.785 | 1e-154 | |
| Q54C70 | 377 | Pyruvate dehydrogenase E1 | yes | no | 0.856 | 0.790 | 0.604 | 1e-105 | |
| P16387 | 420 | Pyruvate dehydrogenase E1 | yes | no | 0.870 | 0.721 | 0.553 | 6e-98 | |
| O13366 | 412 | Pyruvate dehydrogenase E1 | yes | no | 0.893 | 0.754 | 0.542 | 3e-97 | |
| P52899 | 397 | Probable pyruvate dehydro | yes | no | 0.956 | 0.838 | 0.532 | 6e-97 |
| >sp|Q8H1Y0|ODPA2_ARATH Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 605 bits (1559), Expect = e-172, Method: Compositional matrix adjust.
Identities = 282/342 (82%), Positives = 314/342 (91%), Gaps = 5/342 (1%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSF--LLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVE 58
MALS+LSS S+ LKP + + R +STD++P+TIET+VPFTSH CE+PSRSVE
Sbjct: 1 MALSRLSSRSN---TFLKPAITALPSSIRRHVSTDSSPITIETAVPFTSHLCESPSRSVE 57
Query: 59 TTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII 118
T+ +E+L+FFR MA MRRMEIAADSLYKAKL+RGFCHLYDGQEA+A+GMEA ITKKD+II
Sbjct: 58 TSSEEILAFFRDMARMRRMEIAADSLYKAKLIRGFCHLYDGQEALAVGMEAAITKKDAII 117
Query: 119 TAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPL 178
T+YRDHCTF+GRGG L++ FSELMGRK GCSHGKGGSMHFYKKD+ FYGGHGIVGAQIPL
Sbjct: 118 TSYRDHCTFIGRGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHGIVGAQIPL 177
Query: 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAE 238
GCGLAFAQKY+KDE VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA
Sbjct: 178 GCGLAFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAT 237
Query: 239 WRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298
WR+AKSP+Y+KRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSM
Sbjct: 238 WRSAKSPAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSM 297
Query: 299 SDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
SDPGSTYRTRDEISGVRQ RDPIER+RKL+L HD+ATEKELK
Sbjct: 298 SDPGSTYRTRDEISGVRQVRDPIERVRKLLLTHDIATEKELK 339
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The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 1 |
| >sp|P52902|ODPA_PEA Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Pisum sativum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 604 bits (1558), Expect = e-172, Method: Compositional matrix adjust.
Identities = 280/323 (86%), Positives = 304/323 (94%), Gaps = 1/323 (0%)
Query: 19 PLTNSFLLHRPISTDTTP-LTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRM 77
P + +F L+RPIS+DTT LTIETS+PFT+H C+ PSRSV T+P ELLSFFR MA MRRM
Sbjct: 21 PFSAAFTLNRPISSDTTATLTIETSLPFTAHNCDPPSRSVTTSPSELLSFFRTMALMRRM 80
Query: 78 EIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEV 137
EIAADSLYKA L+RGFCHLYDGQEAVA+GMEAG TKKD IITAYRDHCTFLGRGGTLL V
Sbjct: 81 EIAADSLYKANLIRGFCHLYDGQEAVAVGMEAGTTKKDCIITAYRDHCTFLGRGGTLLRV 140
Query: 138 FSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFA 197
++ELMGR+DGCS GKGGSMHFYKKDSGFYGGHGIVGAQ+PLGCGLAF QKY KDE+VTFA
Sbjct: 141 YAELMGRRDGCSKGKGGSMHFYKKDSGFYGGHGIVGAQVPLGCGLAFGQKYLKDESVTFA 200
Query: 198 LYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGL 257
LYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA WR+AKSP+Y+KRGDYVPGL
Sbjct: 201 LYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDYVPGL 260
Query: 258 KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE 317
KVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE
Sbjct: 261 KVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE 320
Query: 318 RDPIERIRKLILAHDLATEKELK 340
RDPIER+RKL+L+HD+ATEKELK
Sbjct: 321 RDPIERVRKLLLSHDIATEKELK 343
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The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|P52901|ODPA1_ARATH Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=E1 ALPHA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 604 bits (1557), Expect = e-172, Method: Compositional matrix adjust.
Identities = 285/340 (83%), Positives = 314/340 (92%), Gaps = 5/340 (1%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETT 60
MALS+LSS S++ I +P + +F R ISTDTTP+TIETS+PFT+H C+ PSRSVE++
Sbjct: 1 MALSRLSSRSNI---ITRPFSAAF--SRLISTDTTPITIETSLPFTAHLCDPPSRSVESS 55
Query: 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITA 120
+ELL FFR MA MRRMEIAADSLYKAKL+RGFCHLYDGQEAVAIGMEA ITKKD+IITA
Sbjct: 56 SQELLDFFRTMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAIGMEAAITKKDAIITA 115
Query: 121 YRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGC 180
YRDHC FLGRGG+L EVFSELMGR+ GCS GKGGSMHFYKK+S FYGGHGIVGAQ+PLGC
Sbjct: 116 YRDHCIFLGRGGSLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFYGGHGIVGAQVPLGC 175
Query: 181 GLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR 240
G+AFAQKY+K+E VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTAEWR
Sbjct: 176 GIAFAQKYNKEEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAEWR 235
Query: 241 AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD 300
AAKSPSYYKRGDYVPGLKVDGMDA AVKQACKFAK+HAL+ GP+ILEMDTYRYHGHSMSD
Sbjct: 236 AAKSPSYYKRGDYVPGLKVDGMDAFAVKQACKFAKQHALEKGPIILEMDTYRYHGHSMSD 295
Query: 301 PGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
PGSTYRTRDEISGVRQERDPIERI+KL+L+HDLATEKELK
Sbjct: 296 PGSTYRTRDEISGVRQERDPIERIKKLVLSHDLATEKELK 335
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The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|P52903|ODPA_SOLTU Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 583 bits (1503), Expect = e-166, Method: Compositional matrix adjust.
Identities = 269/334 (80%), Positives = 302/334 (90%), Gaps = 1/334 (0%)
Query: 8 SPSSLSTNILKPLTNSFLLHRPISTDTTP-LTIETSVPFTSHQCEAPSRSVETTPKELLS 66
S S +I+KPL+ + R +S+D+T +T+ETS+PFTSH + PSRSVET+PKEL++
Sbjct: 4 STSRAINHIMKPLSAAVCATRRLSSDSTATITVETSLPFTSHNIDPPSRSVETSPKELMT 63
Query: 67 FFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCT 126
FF+ M MRRMEIAADSLYKAKL+RGFCHLYDGQEAVA+GMEA ITKKD IITAYRDHC
Sbjct: 64 FFKDMTEMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKKDCIITAYRDHCI 123
Query: 127 FLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQ 186
FLGRGGTL+E F+ELMGR+DGCS GKGGSMHFYKK+SGFYGGHGIVGAQ+PLG GLAFAQ
Sbjct: 124 FLGRGGTLVEAFAELMGRRDGCSRGKGGSMHFYKKESGFYGGHGIVGAQVPLGIGLAFAQ 183
Query: 187 KYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246
KY K++ VTFA+YGDGAANQGQLFEALN+AALWDLPAILVCENNHYGMGTAEWRAAKSP+
Sbjct: 184 KYKKEDYVTFAMYGDGAANQGQLFEALNMAALWDLPAILVCENNHYGMGTAEWRAAKSPA 243
Query: 247 YYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYR 306
YYKRGDYVPGL+VDGMD AVKQAC FAK+HALKNGP+ILEMDTYRYHGHSMSDPGSTYR
Sbjct: 244 YYKRGDYVPGLRVDGMDVFAVKQACTFAKQHALKNGPIILEMDTYRYHGHSMSDPGSTYR 303
Query: 307 TRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
TRDEISGVRQERDP+ERIR LILAH++ATE ELK
Sbjct: 304 TRDEISGVRQERDPVERIRSLILAHNIATEAELK 337
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The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Solanum tuberosum (taxid: 4113) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|Q6Z5N4|ODPA1_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0739600 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 579 bits (1493), Expect = e-164, Method: Compositional matrix adjust.
Identities = 266/319 (83%), Positives = 287/319 (89%)
Query: 22 NSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAA 81
+ + R IS T PLTIETSVPFTSH + PSR V TTP ELL+FFR M+ MRRMEIAA
Sbjct: 18 TALIAARSISDSTAPLTIETSVPFTSHIVDPPSRDVTTTPAELLTFFRDMSVMRRMEIAA 77
Query: 82 DSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSEL 141
DSLYKAKL+RGFCHLYDGQEAVA+GMEA IT+ DSIITAYRDHCT+L RGG L+ F+EL
Sbjct: 78 DSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRSDSIITAYRDHCTYLARGGDLVSAFAEL 137
Query: 142 MGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGD 201
MGR+ GCS GKGGSMHFYKKD+ FYGGHGIVGAQ+PLGCGLAFAQKY K+ET TFALYGD
Sbjct: 138 MGRQAGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGCGLAFAQKYRKEETATFALYGD 197
Query: 202 GAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDG 261
GAANQGQLFEALNI+ALW LPAILVCENNHYGMGTAEWRAAKSP+YYKRGDYVPGLKVDG
Sbjct: 198 GAANQGQLFEALNISALWKLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDG 257
Query: 262 MDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPI 321
MD LAVKQACKFAKEHA+ NGP++LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPI
Sbjct: 258 MDVLAVKQACKFAKEHAIANGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPI 317
Query: 322 ERIRKLILAHDLATEKELK 340
ER+RKLILAHDLAT ELK
Sbjct: 318 ERVRKLILAHDLATAAELK 336
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The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|Q654V6|ODPA2_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0246500 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 543 bits (1400), Expect = e-154, Method: Compositional matrix adjust.
Identities = 246/313 (78%), Positives = 276/313 (88%)
Query: 28 RPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKA 87
R +S T PLTIETSVP+ SH + P R V TT +EL +FFR M+ MRR EIAADSLYKA
Sbjct: 32 RGVSDSTEPLTIETSVPYKSHIVDPPPREVATTARELATFFRDMSAMRRAEIAADSLYKA 91
Query: 88 KLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDG 147
KL+RGFCHLYDGQEAVA+GMEA T+ D+IITAYRDHC +L RGG L +F+ELMGR+ G
Sbjct: 92 KLIRGFCHLYDGQEAVAVGMEAATTRADAIITAYRDHCAYLARGGDLAALFAELMGRRGG 151
Query: 148 CSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQG 207
CS GKGGSMH YKKD+ FYGGHGIVGAQ+PLGCGLAFAQ+Y K+ VTF LYGDGAANQG
Sbjct: 152 CSRGKGGSMHLYKKDANFYGGHGIVGAQVPLGCGLAFAQRYRKEAAVTFDLYGDGAANQG 211
Query: 208 QLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAV 267
QLFEALN+AALW LP +LVCENNHYGMGTAEWRA+KSP+YYKRGDYVPGLKVDGMD LAV
Sbjct: 212 QLFEALNMAALWKLPVVLVCENNHYGMGTAEWRASKSPAYYKRGDYVPGLKVDGMDVLAV 271
Query: 268 KQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL 327
KQACKFAK+HAL+NGP+ILEMDTYRYHGHSMSDPGSTYRTRDEI+G+RQERDPIER+RKL
Sbjct: 272 KQACKFAKQHALENGPIILEMDTYRYHGHSMSDPGSTYRTRDEIAGIRQERDPIERVRKL 331
Query: 328 ILAHDLATEKELK 340
+LAHD AT +ELK
Sbjct: 332 LLAHDFATTQELK 344
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|Q54C70|ODPA_DICDI Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=pdhA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/301 (60%), Positives = 222/301 (73%), Gaps = 3/301 (0%)
Query: 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIG 106
++ C+ PS S T EL+SFF +M+ RR+E D LYK KL+RGFCHLY GQEAV G
Sbjct: 35 TYLCDGPSDSTVTNKDELISFFTEMSRFRRLETVCDGLYKKKLIRGFCHLYTGQEAVCAG 94
Query: 107 MEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFY 166
+E+ ITK D IITAYRDH L RG T E+F+EL+ ++ GCS GKGGSMH + K+ FY
Sbjct: 95 LESAITKDDHIITAYRDHTYMLSRGATPEEIFAELLMKETGCSKGKGGSMHMFTKN--FY 152
Query: 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV 226
GG+GIVGAQ PLG G+AFAQKY+K V A+YGDGAANQGQLFEA N+A+LW LP I +
Sbjct: 153 GGNGIVGAQCPLGAGIAFAQKYNKTGNVCLAMYGDGAANQGQLFEAFNMASLWKLPVIFI 212
Query: 227 CENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMI 285
CENN YGMGT++ R+ +Y RG YV GLKVDGMD AVK+A K+A E NGP+I
Sbjct: 213 CENNKYGMGTSQKRSTAGHDFYTRGHYVAGLKVDGMDVFAVKEAGKYAAEWCRAGNGPII 272
Query: 286 LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQL 345
LEMDTYRY GHSMSDPG TYRTR+E++ VRQ RDPIE IR++IL + +ATE +L +
Sbjct: 273 LEMDTYRYVGHSMSDPGITYRTREEVNHVRQTRDPIENIRQIILDNKIATEDQLAAIEET 332
Query: 346 V 346
V
Sbjct: 333 V 333
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|P16387|ODPA_YEAST Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 357 bits (917), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 171/309 (55%), Positives = 222/309 (71%), Gaps = 6/309 (1%)
Query: 38 TIETSVP---FTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFC 94
T++ +P F S+ E P S ET+ LL ++ M +RRME+A D+LYKAK +RGFC
Sbjct: 52 TVQIELPESSFESYMLEPPDLSYETSKATLLQMYKDMVIIRRMEMACDALYKAKKIRGFC 111
Query: 95 HLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGG 154
HL GQEA+A+G+E ITK DSIIT+YR H RG ++ V +ELMGR+ G S+GKGG
Sbjct: 112 HLSVGQEAIAVGIENAITKLDSIITSYRCHGFTFMRGASVKAVLAELMGRRAGVSYGKGG 171
Query: 155 SMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN 214
SMH Y GFYGG+GIVGAQ+PLG GLAFA +Y ++ +F LYGDGA+NQGQ+FE+ N
Sbjct: 172 SMHLYA--PGFYGGNGIVGAQVPLGAGLAFAHQYKNEDACSFTLYGDGASNQGQVFESFN 229
Query: 215 IAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFA 274
+A LW+LP + CENN YGMGTA R++ Y+KRG Y+PGLKV+GMD LAV QA KFA
Sbjct: 230 MAKLWNLPVVFCCENNKYGMGTAASRSSAMTEYFKRGQYIPGLKVNGMDILAVYQASKFA 289
Query: 275 KEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDL 333
K+ L GP++LE +TYRY GHSMSDPG+TYRTRDEI +R + DPI ++ ++ +
Sbjct: 290 KDWCLSGKGPLVLEYETYRYGGHSMSDPGTTYRTRDEIQHMRSKNDPIAGLKMHLIDLGI 349
Query: 334 ATEKELKVF 342
ATE E+K +
Sbjct: 350 ATEAEVKAY 358
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|O13366|ODPA_KLULA Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PDA1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 355 bits (911), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 172/317 (54%), Positives = 225/317 (70%), Gaps = 6/317 (1%)
Query: 28 RPISTDTTPLTI-ETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYK 86
+P D + + ETS F + + P S +TT LL ++ M +RRME+A D+LYK
Sbjct: 38 KPGDDDLVQIDLPETS--FEGYLLDVPELSYQTTKSNLLQMYKDMIIVRRMEMACDALYK 95
Query: 87 AKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKD 146
AK +RGFCH GQEA+A+G+E ITK+D++IT+YR H RG + V +ELMGR+
Sbjct: 96 AKKIRGFCHSSVGQEAIAVGIENAITKRDTVITSYRCHGFTYMRGAAVQAVLAELMGRRT 155
Query: 147 GCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ 206
G S GKGGSMH Y GFYGG+GIVGAQ+PLG GLAFA +Y ++ +FALYGDGA+NQ
Sbjct: 156 GVSFGKGGSMHLYA--PGFYGGNGIVGAQVPLGAGLAFAHQYKHEDACSFALYGDGASNQ 213
Query: 207 GQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALA 266
GQ+FE+ N+A LW+LPA+ CENN YGMGTA R++ Y+KRG Y+PGLKV+GMD LA
Sbjct: 214 GQVFESFNMAKLWNLPAVFCCENNKYGMGTAAARSSAMTEYFKRGQYIPGLKVNGMDILA 273
Query: 267 VKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIR 325
V QA KFAK+ + NGP++LE +TYRY GHSMSDPG+TYRTRDEI +R + DPI ++
Sbjct: 274 VYQASKFAKDWTVSGNGPIVLEYETYRYGGHSMSDPGTTYRTRDEIQHMRSKNDPIAGLK 333
Query: 326 KLILAHDLATEKELKVF 342
+L +ATE E+K +
Sbjct: 334 MHLLELGIATEDEIKAY 350
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
| >sp|P52899|ODPA_CAEEL Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 180/338 (53%), Positives = 231/338 (68%), Gaps = 5/338 (1%)
Query: 11 SLSTNILKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCE-APSRSVETTPKELLSFFR 69
SL L+ LT S + + + +T ++ T P H+ + P+ SV ++ L ++R
Sbjct: 2 SLFARQLQSLTASGIRTQQVRLASTEVSFHTK-PCKLHKLDNGPNTSVTLNREDALKYYR 60
Query: 70 QMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLG 129
M +RRME AA +LYK K +RGFCHLY GQEA A+GM+A +T+ D++ITAYR H
Sbjct: 61 DMQVIRRMESAAGNLYKEKKIRGFCHLYSGQEACAVGMKAAMTEGDAVITAYRCHGWTWL 120
Query: 130 RGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYS 189
G T+ EV +EL GR G HGKGGSMH Y K+ FYGG+GIVGAQ PLG G+A A KY
Sbjct: 121 LGATVTEVLAELTGRVAGNVHGKGGSMHMYTKN--FYGGNGIVGAQQPLGAGVALAMKYR 178
Query: 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK 249
+ + V LYGDGAANQGQLFEA N+A LWDLP + VCENN +GMGT R++ S YY
Sbjct: 179 EQKNVCVTLYGDGAANQGQLFEATNMAKLWDLPVLFVCENNGFGMGTTAERSSASTEYYT 238
Query: 250 RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTR 308
RGDYVPG+ VDGMD LAV++A K+AKE+ GP+++EM TYRYHGHSMSDPG++YRTR
Sbjct: 239 RGDYVPGIWVDGMDILAVREATKWAKEYCDSGKGPLMMEMATYRYHGHSMSDPGTSYRTR 298
Query: 309 DEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLV 346
+EI VR+ RDPI + I+ LATE+ELK + V
Sbjct: 299 EEIQEVRKTRDPITGFKDRIITSSLATEEELKAIDKEV 336
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 348 | ||||||
| 68138987 | 395 | pyruvate dehydrogenase, partial [Citrus | 0.968 | 0.853 | 0.988 | 0.0 | |
| 211906500 | 394 | pyruvate dehydrogenase alpha subunit [Go | 0.899 | 0.794 | 0.923 | 1e-175 | |
| 255558342 | 399 | pyruvate dehydrogenase, putative [Ricinu | 0.971 | 0.847 | 0.853 | 1e-175 | |
| 157849684 | 389 | pyruvate dehydrogenase complex E1 alpha | 0.962 | 0.861 | 0.852 | 1e-174 | |
| 356567586 | 395 | PREDICTED: pyruvate dehydrogenase E1 com | 0.977 | 0.860 | 0.824 | 1e-172 | |
| 356526868 | 394 | PREDICTED: pyruvate dehydrogenase E1 com | 0.974 | 0.860 | 0.824 | 1e-170 | |
| 15221692 | 393 | pyruvate dehydrogenase E1 component subu | 0.968 | 0.857 | 0.824 | 1e-170 | |
| 449458013 | 399 | PREDICTED: pyruvate dehydrogenase E1 com | 0.873 | 0.761 | 0.921 | 1e-170 | |
| 297850898 | 393 | IAA-conjugate-resistant 4 [Arabidopsis l | 0.968 | 0.857 | 0.821 | 1e-170 | |
| 1709449 | 397 | RecName: Full=Pyruvate dehydrogenase E1 | 0.925 | 0.811 | 0.866 | 1e-170 |
| >gi|68138987|gb|AAY86036.1| pyruvate dehydrogenase, partial [Citrus x paradisi] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/337 (98%), Positives = 333/337 (98%)
Query: 4 SKLSSPSSLSTNILKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKE 63
SKLSS SSLSTNILKPLTNSF LHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKE
Sbjct: 5 SKLSSSSSLSTNILKPLTNSFFLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKE 64
Query: 64 LLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRD 123
LLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRD
Sbjct: 65 LLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRD 124
Query: 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLA 183
HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDS YGGHGIVGAQIPLGCGLA
Sbjct: 125 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSRLYGGHGIVGAQIPLGCGLA 184
Query: 184 FAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK 243
FAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK
Sbjct: 185 FAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK 244
Query: 244 SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS 303
SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS
Sbjct: 245 SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS 304
Query: 304 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK
Sbjct: 305 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 341
|
Source: Citrus x paradisi Species: Citrus x paradisi Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|211906500|gb|ACJ11743.1| pyruvate dehydrogenase alpha subunit [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 289/313 (92%), Positives = 302/313 (96%)
Query: 28 RPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKA 87
RPIS D +PLT+ETSVPFTSHQCEAPSRSVET PKELL+FFR MA MRRMEIAADSLYKA
Sbjct: 28 RPISGDNSPLTVETSVPFTSHQCEAPSRSVETNPKELLTFFRDMALMRRMEIAADSLYKA 87
Query: 88 KLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDG 147
KL+RGFCHLYDGQEAVA+GMEA ITKKD IITAYRDHCTF+ RGGTLLEVF+ELMGR+ G
Sbjct: 88 KLIRGFCHLYDGQEAVAVGMEAAITKKDCIITAYRDHCTFVSRGGTLLEVFAELMGRQAG 147
Query: 148 CSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQG 207
CS GKGGSMHFYKKDS FYGGHGIVGAQ+PLGCGLAFAQKYSKDETVTFALYGDGAANQG
Sbjct: 148 CSKGKGGSMHFYKKDSNFYGGHGIVGAQVPLGCGLAFAQKYSKDETVTFALYGDGAANQG 207
Query: 208 QLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAV 267
QLFEALNI+ALWDLPAILVCENNHYGMGTAEWRAAKSP+YYKRGDYVPGLKVDGMDALAV
Sbjct: 208 QLFEALNISALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDALAV 267
Query: 268 KQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL 327
KQACKFAKEHALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL
Sbjct: 268 KQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL 327
Query: 328 ILAHDLATEKELK 340
IL+HDLATEKELK
Sbjct: 328 ILSHDLATEKELK 340
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558342|ref|XP_002520198.1| pyruvate dehydrogenase, putative [Ricinus communis] gi|223540690|gb|EEF42253.1| pyruvate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 296/347 (85%), Positives = 318/347 (91%), Gaps = 9/347 (2%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSFL-------LHRPISTDTTPLTIETSVPFTSHQCEAP 53
MALS L+S S +N+LK LT + L RPIST + PLTIETSVPFT H+CE P
Sbjct: 1 MALSHLTSSSR--SNLLKSLTTTTTTAAAAFTLRRPISTSSDPLTIETSVPFTPHRCEPP 58
Query: 54 SRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITK 113
SR+V+TTP+ELLSFFR MATMRRMEIAADSLYKAKL+RGFCHLYDGQEAVA+GMEA ITK
Sbjct: 59 SRNVDTTPQELLSFFRDMATMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITK 118
Query: 114 KDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVG 173
KD IITAYRDHCTF+GRGGT+L+VF+ELMGRKDGCS GKGGSMHFYKK++GFYGGHGIVG
Sbjct: 119 KDCIITAYRDHCTFVGRGGTMLQVFAELMGRKDGCSRGKGGSMHFYKKEAGFYGGHGIVG 178
Query: 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG 233
AQIPLGCGLAFAQKY+KDETVTFALYGDGAANQGQLFEALNI+ALWDLP ILVCENNHYG
Sbjct: 179 AQIPLGCGLAFAQKYNKDETVTFALYGDGAANQGQLFEALNISALWDLPVILVCENNHYG 238
Query: 234 MGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293
MGTAEWRAAKSP+YYKRGDYVPGLKVDGMD LAVKQACKFAKE LKNGP+ILEMDTYRY
Sbjct: 239 MGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEFVLKNGPLILEMDTYRY 298
Query: 294 HGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
HGHSMSDPGSTYRTRDEISGVRQERDPIERIRK+ILAHDLATEKELK
Sbjct: 299 HGHSMSDPGSTYRTRDEISGVRQERDPIERIRKVILAHDLATEKELK 345
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|157849684|gb|ABV89625.1| pyruvate dehydrogenase complex E1 alpha subunit dehydrogenase [Brassica rapa] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/340 (85%), Positives = 318/340 (93%), Gaps = 5/340 (1%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETT 60
MALS+LSS S++ I +PL+ +F R ISTDTTP+TIETS+PFT+H C+ PSRSVE++
Sbjct: 1 MALSRLSSRSNI---ISRPLSAAF--RRSISTDTTPITIETSLPFTAHLCDPPSRSVESS 55
Query: 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITA 120
+ELLSFFR MA MRRMEIAADSLYKAKL+RGFCHLYDGQEAVAIGMEA ITKKD+IITA
Sbjct: 56 TQELLSFFRTMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAIGMEAAITKKDAIITA 115
Query: 121 YRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGC 180
YRDHC FLGRGG+L EVF+ELMGR+DGCS GKGGSMHFYKKDS FYGGHGIVGAQ+PLGC
Sbjct: 116 YRDHCIFLGRGGSLYEVFAELMGRQDGCSRGKGGSMHFYKKDSSFYGGHGIVGAQVPLGC 175
Query: 181 GLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR 240
G+AFAQKYSK+E VTFA+YGDGAANQGQLFEALNI+ALWDLP+ILVCENNHYGMGTAEWR
Sbjct: 176 GIAFAQKYSKEEAVTFAMYGDGAANQGQLFEALNISALWDLPSILVCENNHYGMGTAEWR 235
Query: 241 AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD 300
AAKSPSYYKRGDYVPGLKVDGMDA AVKQACKFAKEHALKNGP+ILEMDTYRYHGHSMSD
Sbjct: 236 AAKSPSYYKRGDYVPGLKVDGMDAFAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSD 295
Query: 301 PGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
PGSTYRTRDEISGVRQERDPIERI+KL+L+HDLATEKELK
Sbjct: 296 PGSTYRTRDEISGVRQERDPIERIKKLVLSHDLATEKELK 335
|
Source: Brassica rapa Species: Brassica rapa Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567586|ref|XP_003551999.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 281/341 (82%), Positives = 312/341 (91%), Gaps = 1/341 (0%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSF-LLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVET 59
MALS+++ S +N+LKPL++ L R +ST + PLT+ETSVPFTSH C+AP R+VET
Sbjct: 1 MALSRVAQSSPSQSNLLKPLSSYLSLRRRSVSTSSEPLTVETSVPFTSHNCDAPPRAVET 60
Query: 60 TPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIIT 119
+ EL SFFR MA MRRMEIAADSLYKAKL+RGFCHLYDGQEAVA+GMEA IT+KD IIT
Sbjct: 61 SSAELFSFFRDMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRKDCIIT 120
Query: 120 AYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLG 179
AYRDHCTFL RGGTL+EVF+ELMGR+DGCS GKGGSMHFY+K+ GFYGGHGIVGAQ+PLG
Sbjct: 121 AYRDHCTFLARGGTLIEVFAELMGRRDGCSKGKGGSMHFYRKEGGFYGGHGIVGAQVPLG 180
Query: 180 CGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEW 239
CGLAFAQKY KDE VTF++YGDGAANQGQLFEALNI+ALWDLP+ILVCENNHYGMGTAEW
Sbjct: 181 CGLAFAQKYCKDENVTFSMYGDGAANQGQLFEALNISALWDLPSILVCENNHYGMGTAEW 240
Query: 240 RAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299
RAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKE ALKNGP+ILEMDTYRYHGHSMS
Sbjct: 241 RAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEFALKNGPIILEMDTYRYHGHSMS 300
Query: 300 DPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
DPGSTYRTRDEISGVRQERDPIER+RKL+L H++ATEKELK
Sbjct: 301 DPGSTYRTRDEISGVRQERDPIERVRKLLLTHEIATEKELK 341
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526868|ref|XP_003532038.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 281/341 (82%), Positives = 312/341 (91%), Gaps = 2/341 (0%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSF-LLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVET 59
MALS++ + SS S N+LKPL + L R +ST + PLTIETSVPFTSH C+APSR+VET
Sbjct: 1 MALSRVVAQSSQS-NLLKPLASYLSLRRRSVSTSSDPLTIETSVPFTSHNCDAPSRAVET 59
Query: 60 TPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIIT 119
+ EL +FF MA MRRMEIAADSLYKAKL+RGFCHLYDGQEAVA+GMEA IT+KD +IT
Sbjct: 60 SSAELFAFFHDMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRKDCVIT 119
Query: 120 AYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLG 179
AYRDHCTFL RGGTL+E+FSELMGR+DGCS GKGGSMHFY+K+ GFYGGHGIVGAQ+PLG
Sbjct: 120 AYRDHCTFLARGGTLIEIFSELMGRRDGCSKGKGGSMHFYRKEGGFYGGHGIVGAQVPLG 179
Query: 180 CGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEW 239
CGLAFAQKY KDE VTF++YGDGAANQGQLFEALNI+ALWDLP+ILVCENNHYGMGTAEW
Sbjct: 180 CGLAFAQKYCKDENVTFSMYGDGAANQGQLFEALNISALWDLPSILVCENNHYGMGTAEW 239
Query: 240 RAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299
RAAKSP+YYKRGDYVPGLKVDGMDALAVKQACKFAKE ALKNGP+ILEMDTYRYHGHSMS
Sbjct: 240 RAAKSPAYYKRGDYVPGLKVDGMDALAVKQACKFAKEFALKNGPIILEMDTYRYHGHSMS 299
Query: 300 DPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
DPGSTYRTRDEISGVRQERDPIER+RKL+L H++ATEKELK
Sbjct: 300 DPGSTYRTRDEISGVRQERDPIERVRKLLLTHEIATEKELK 340
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221692|ref|NP_173828.1| pyruvate dehydrogenase E1 component subunit alpha-2 [Arabidopsis thaliana] gi|118573089|sp|Q8H1Y0.2|ODPA2_ARATH RecName: Full=Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial; Short=PDHE1-A; Flags: Precursor gi|13430606|gb|AAK25925.1|AF360215_1 putative pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|2829869|gb|AAC00577.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|15293169|gb|AAK93695.1| putative pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|21593680|gb|AAM65647.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|332192371|gb|AEE30492.1| pyruvate dehydrogenase E1 component subunit alpha-2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 282/342 (82%), Positives = 314/342 (91%), Gaps = 5/342 (1%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSF--LLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVE 58
MALS+LSS S+ LKP + + R +STD++P+TIET+VPFTSH CE+PSRSVE
Sbjct: 1 MALSRLSSRSN---TFLKPAITALPSSIRRHVSTDSSPITIETAVPFTSHLCESPSRSVE 57
Query: 59 TTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII 118
T+ +E+L+FFR MA MRRMEIAADSLYKAKL+RGFCHLYDGQEA+A+GMEA ITKKD+II
Sbjct: 58 TSSEEILAFFRDMARMRRMEIAADSLYKAKLIRGFCHLYDGQEALAVGMEAAITKKDAII 117
Query: 119 TAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPL 178
T+YRDHCTF+GRGG L++ FSELMGRK GCSHGKGGSMHFYKKD+ FYGGHGIVGAQIPL
Sbjct: 118 TSYRDHCTFIGRGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHGIVGAQIPL 177
Query: 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAE 238
GCGLAFAQKY+KDE VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA
Sbjct: 178 GCGLAFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAT 237
Query: 239 WRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298
WR+AKSP+Y+KRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSM
Sbjct: 238 WRSAKSPAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSM 297
Query: 299 SDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
SDPGSTYRTRDEISGVRQ RDPIER+RKL+L HD+ATEKELK
Sbjct: 298 SDPGSTYRTRDEISGVRQVRDPIERVRKLLLTHDIATEKELK 339
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458013|ref|XP_004146742.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 280/304 (92%), Positives = 295/304 (97%)
Query: 37 LTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHL 96
LT+ETSVPFT+H C+ PSRSVETTPKELL FFR MA MRRMEIAADSLYKAKL+RGFCHL
Sbjct: 42 LTVETSVPFTAHNCDEPSRSVETTPKELLRFFRDMALMRRMEIAADSLYKAKLIRGFCHL 101
Query: 97 YDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSM 156
YDGQEAVA+GMEA ITKKD+IITAYRDHCTFLGRGGTLLEVFSELMGR+ GCS GKGGSM
Sbjct: 102 YDGQEAVAVGMEAAITKKDAIITAYRDHCTFLGRGGTLLEVFSELMGRQAGCSRGKGGSM 161
Query: 157 HFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIA 216
HFYKKD+GFYGGHGIVGAQ+PLGCG+AFAQKYSKDETVTFALYGDGAANQGQLFEALNI+
Sbjct: 162 HFYKKDAGFYGGHGIVGAQVPLGCGVAFAQKYSKDETVTFALYGDGAANQGQLFEALNIS 221
Query: 217 ALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKE 276
ALWDLP ILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKE
Sbjct: 222 ALWDLPVILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKE 281
Query: 277 HALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATE 336
HALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL+L++DLATE
Sbjct: 282 HALKNGPLILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLVLSYDLATE 341
Query: 337 KELK 340
KELK
Sbjct: 342 KELK 345
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850898|ref|XP_002893330.1| IAA-conjugate-resistant 4 [Arabidopsis lyrata subsp. lyrata] gi|297339172|gb|EFH69589.1| IAA-conjugate-resistant 4 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 281/342 (82%), Positives = 315/342 (92%), Gaps = 5/342 (1%)
Query: 1 MALSKLSSPSSLSTNILKPLTNSF--LLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVE 58
MALS+LSS S+ LKP + + R +STD++P+TIET+VPFTSH CE+PSRSVE
Sbjct: 1 MALSRLSSRSN---TFLKPAITALPSSIRRHVSTDSSPITIETAVPFTSHLCESPSRSVE 57
Query: 59 TTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII 118
T+ +E+L+FFR MA MRRMEIAADSLYKAKL+RGFCHLYDGQEA+A+GMEA IT+KD+II
Sbjct: 58 TSSEEILAFFRDMARMRRMEIAADSLYKAKLIRGFCHLYDGQEALAVGMEAAITRKDAII 117
Query: 119 TAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPL 178
T+YRDHCTF+GRGG L++ FSELMGRK GCSHGKGGSMHFYKKD+ FYGGHGIVGAQIPL
Sbjct: 118 TSYRDHCTFIGRGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHGIVGAQIPL 177
Query: 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAE 238
GCGLAFAQKY+KDE VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA
Sbjct: 178 GCGLAFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAT 237
Query: 239 WRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298
WR+AKSP+Y+KRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSM
Sbjct: 238 WRSAKSPAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSM 297
Query: 299 SDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
SDPGSTYRTRDEISGVRQ RDPIER+RKL+L+HD+ATEKELK
Sbjct: 298 SDPGSTYRTRDEISGVRQVRDPIERVRKLLLSHDIATEKELK 339
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1709449|sp|P52902.1|ODPA_PEA RecName: Full=Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial; Short=PDHE1-A; Flags: Precursor gi|1263302|gb|AAA97411.1| pyruvate dehydrogenase E1 alpha subunit [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 280/323 (86%), Positives = 304/323 (94%), Gaps = 1/323 (0%)
Query: 19 PLTNSFLLHRPISTDTTP-LTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRM 77
P + +F L+RPIS+DTT LTIETS+PFT+H C+ PSRSV T+P ELLSFFR MA MRRM
Sbjct: 21 PFSAAFTLNRPISSDTTATLTIETSLPFTAHNCDPPSRSVTTSPSELLSFFRTMALMRRM 80
Query: 78 EIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEV 137
EIAADSLYKA L+RGFCHLYDGQEAVA+GMEAG TKKD IITAYRDHCTFLGRGGTLL V
Sbjct: 81 EIAADSLYKANLIRGFCHLYDGQEAVAVGMEAGTTKKDCIITAYRDHCTFLGRGGTLLRV 140
Query: 138 FSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFA 197
++ELMGR+DGCS GKGGSMHFYKKDSGFYGGHGIVGAQ+PLGCGLAF QKY KDE+VTFA
Sbjct: 141 YAELMGRRDGCSKGKGGSMHFYKKDSGFYGGHGIVGAQVPLGCGLAFGQKYLKDESVTFA 200
Query: 198 LYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGL 257
LYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA WR+AKSP+Y+KRGDYVPGL
Sbjct: 201 LYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDYVPGL 260
Query: 258 KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE 317
KVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE
Sbjct: 261 KVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE 320
Query: 318 RDPIERIRKLILAHDLATEKELK 340
RDPIER+RKL+L+HD+ATEKELK
Sbjct: 321 RDPIERVRKLLLSHDIATEKELK 343
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 348 | ||||||
| TAIR|locus:2032367 | 393 | IAR4 "IAA-CONJUGATE-RESISTANT | 0.931 | 0.824 | 0.840 | 2.8e-153 | |
| TAIR|locus:2025966 | 389 | E1 ALPHA "pyruvate dehydrogena | 0.933 | 0.835 | 0.847 | 1.5e-152 | |
| DICTYBASE|DDB_G0292994 | 377 | pdhA "pyruvate dehydrogenase E | 0.856 | 0.790 | 0.604 | 9.7e-96 | |
| ZFIN|ZDB-GENE-040426-2719 | 393 | pdha1a "pyruvate dehydrogenase | 0.827 | 0.732 | 0.580 | 1.5e-90 | |
| SGD|S000000980 | 420 | PDA1 "E1 alpha subunit of the | 0.882 | 0.730 | 0.555 | 1.9e-90 | |
| CGD|CAL0001531 | 401 | PDA1 [Candida albicans (taxid: | 0.873 | 0.758 | 0.542 | 6.5e-90 | |
| POMBASE|SPAC26F1.03 | 409 | pda1 "pyruvate dehydrogenase e | 0.893 | 0.760 | 0.553 | 2.8e-89 | |
| WB|WBGene00011510 | 414 | pdha-1 [Caenorhabditis elegans | 0.919 | 0.772 | 0.547 | 5.9e-89 | |
| UNIPROTKB|G4N7T0 | 416 | MGG_06371 "Pyruvate dehydrogen | 0.882 | 0.737 | 0.536 | 1.2e-88 | |
| UNIPROTKB|P52900 | 363 | PDHA "Pyruvate dehydrogenase E | 0.827 | 0.793 | 0.563 | 5.3e-88 |
| TAIR|locus:2032367 IAR4 "IAA-CONJUGATE-RESISTANT 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1495 (531.3 bits), Expect = 2.8e-153, P = 2.8e-153
Identities = 274/326 (84%), Positives = 304/326 (93%)
Query: 17 LKPLTNSF--LLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATM 74
LKP + + R +STD++P+TIET+VPFTSH CE+PSRSVET+ +E+L+FFR MA M
Sbjct: 14 LKPAITALPSSIRRHVSTDSSPITIETAVPFTSHLCESPSRSVETSSEEILAFFRDMARM 73
Query: 75 RRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTL 134
RRMEIAADSLYKAKL+RGFCHLYDGQEA+A+GMEA ITKKD+IIT+YRDHCTF+GRGG L
Sbjct: 74 RRMEIAADSLYKAKLIRGFCHLYDGQEALAVGMEAAITKKDAIITSYRDHCTFIGRGGKL 133
Query: 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETV 194
++ FSELMGRK GCSHGKGGSMHFYKKD+ FYGGHGIVGAQIPLGCGLAFAQKY+KDE V
Sbjct: 134 VDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHGIVGAQIPLGCGLAFAQKYNKDEAV 193
Query: 195 TFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYV 254
TFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA WR+AKSP+Y+KRGDYV
Sbjct: 194 TFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDYV 253
Query: 255 PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGV 314
PGLKVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGV
Sbjct: 254 PGLKVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGV 313
Query: 315 RQERDPIERIRKLILAHDLATEKELK 340
RQ RDPIER+RKL+L HD+ATEKELK
Sbjct: 314 RQVRDPIERVRKLLLTHDIATEKELK 339
|
|
| TAIR|locus:2025966 E1 ALPHA "pyruvate dehydrogenase complex E1 alpha subunit" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1488 (528.9 bits), Expect = 1.5e-152, P = 1.5e-152
Identities = 278/328 (84%), Positives = 306/328 (93%)
Query: 14 TNIL-KPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMA 72
+NI+ +P + +F R ISTDTTP+TIETS+PFT+H C+ PSRSVE++ +ELL FFR MA
Sbjct: 10 SNIITRPFSAAF--SRLISTDTTPITIETSLPFTAHLCDPPSRSVESSSQELLDFFRTMA 67
Query: 73 TMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132
MRRMEIAADSLYKAKL+RGFCHLYDGQEAVAIGMEA ITKKD+IITAYRDHC FLGRGG
Sbjct: 68 LMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAIGMEAAITKKDAIITAYRDHCIFLGRGG 127
Query: 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE 192
+L EVFSELMGR+ GCS GKGGSMHFYKK+S FYGGHGIVGAQ+PLGCG+AFAQKY+K+E
Sbjct: 128 SLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFYGGHGIVGAQVPLGCGIAFAQKYNKEE 187
Query: 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD 252
VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD
Sbjct: 188 AVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD 247
Query: 253 YVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 312
YVPGLKVDGMDA AVKQACKFAK+HAL+ GP+ILEMDTYRYHGHSMSDPGSTYRTRDEIS
Sbjct: 248 YVPGLKVDGMDAFAVKQACKFAKQHALEKGPIILEMDTYRYHGHSMSDPGSTYRTRDEIS 307
Query: 313 GVRQERDPIERIRKLILAHDLATEKELK 340
GVRQERDPIERI+KL+L+HDLATEKELK
Sbjct: 308 GVRQERDPIERIKKLVLSHDLATEKELK 335
|
|
| DICTYBASE|DDB_G0292994 pdhA "pyruvate dehydrogenase E1 alpha subunit" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 182/301 (60%), Positives = 222/301 (73%)
Query: 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIG 106
++ C+ PS S T EL+SFF +M+ RR+E D LYK KL+RGFCHLY GQEAV G
Sbjct: 35 TYLCDGPSDSTVTNKDELISFFTEMSRFRRLETVCDGLYKKKLIRGFCHLYTGQEAVCAG 94
Query: 107 MEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFY 166
+E+ ITK D IITAYRDH L RG T E+F+EL+ ++ GCS GKGGSMH + K+ FY
Sbjct: 95 LESAITKDDHIITAYRDHTYMLSRGATPEEIFAELLMKETGCSKGKGGSMHMFTKN--FY 152
Query: 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV 226
GG+GIVGAQ PLG G+AFAQKY+K V A+YGDGAANQGQLFEA N+A+LW LP I +
Sbjct: 153 GGNGIVGAQCPLGAGIAFAQKYNKTGNVCLAMYGDGAANQGQLFEAFNMASLWKLPVIFI 212
Query: 227 CENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMI 285
CENN YGMGT++ R+ +Y RG YV GLKVDGMD AVK+A K+A E NGP+I
Sbjct: 213 CENNKYGMGTSQKRSTAGHDFYTRGHYVAGLKVDGMDVFAVKEAGKYAAEWCRAGNGPII 272
Query: 286 LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQL 345
LEMDTYRY GHSMSDPG TYRTR+E++ VRQ RDPIE IR++IL + +ATE +L +
Sbjct: 273 LEMDTYRYVGHSMSDPGITYRTREEVNHVRQTRDPIENIRQIILDNKIATEDQLAAIEET 332
Query: 346 V 346
V
Sbjct: 333 V 333
|
|
| ZFIN|ZDB-GENE-040426-2719 pdha1a "pyruvate dehydrogenase (lipoamide) alpha 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 169/291 (58%), Positives = 214/291 (73%)
Query: 51 EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG 110
E P+ T +E L ++R M TMRRME+ AD LYK K++RGFCHLYDGQEA A+G+EAG
Sbjct: 51 EGPAVQAVLTREEGLQYYRTMQTMRRMELKADQLYKQKIIRGFCHLYDGQEACAVGIEAG 110
Query: 111 ITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHG 170
I D +ITAYR H L RGGT+ E+ +EL GR+ G + GKGGSMH Y K FYGG+G
Sbjct: 111 INLSDHLITAYRAHGYTLTRGGTVREIMAELTGRRGGIAKGKGGSMHMYTKH--FYGGNG 168
Query: 171 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230
IVGAQ+PLG G+A A KY + LYGDGAANQGQ+FE N+A+LW LP I +CENN
Sbjct: 169 IVGAQVPLGAGVALACKYQGKNELCVCLYGDGAANQGQIFETYNMASLWKLPCIFICENN 228
Query: 231 HYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKN-GPMILEMD 289
YGMGT+ RAA S YYKRGD++PGL+VDGMD L V++A KFA EH GP+++E+
Sbjct: 229 KYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDVLCVREATKFAAEHCRSGKGPILMELQ 288
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
TYRYHGHSMSDPG +YRTR+EI VR + DPI ++ +L++++A+ +ELK
Sbjct: 289 TYRYHGHSMSDPGVSYRTREEIQEVRSKSDPISLLKDRMLSNNMASVEELK 339
|
|
| SGD|S000000980 PDA1 "E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
Identities = 174/313 (55%), Positives = 226/313 (72%)
Query: 32 TDTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVR 91
+DT + + S F S+ E P S ET+ LL ++ M +RRME+A D+LYKAK +R
Sbjct: 50 SDTVQIELPES-SFESYMLEPPDLSYETSKATLLQMYKDMVIIRRMEMACDALYKAKKIR 108
Query: 92 GFCHLYDGQEAVAIGMEAGITKKDSIITAYRDH-CTFLGRGGTLLEVFSELMGRKDGCSH 150
GFCHL GQEA+A+G+E ITK DSIIT+YR H TF+ RG ++ V +ELMGR+ G S+
Sbjct: 109 GFCHLSVGQEAIAVGIENAITKLDSIITSYRCHGFTFM-RGASVKAVLAELMGRRAGVSY 167
Query: 151 GKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLF 210
GKGGSMH Y GFYGG+GIVGAQ+PLG GLAFA +Y ++ +F LYGDGA+NQGQ+F
Sbjct: 168 GKGGSMHLYAP--GFYGGNGIVGAQVPLGAGLAFAHQYKNEDACSFTLYGDGASNQGQVF 225
Query: 211 EALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQA 270
E+ N+A LW+LP + CENN YGMGTA R++ Y+KRG Y+PGLKV+GMD LAV QA
Sbjct: 226 ESFNMAKLWNLPVVFCCENNKYGMGTAASRSSAMTEYFKRGQYIPGLKVNGMDILAVYQA 285
Query: 271 CKFAKEHALKN-GPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLIL 329
KFAK+ L GP++LE +TYRY GHSMSDPG+TYRTRDEI +R + DPI ++ ++
Sbjct: 286 SKFAKDWCLSGKGPLVLEYETYRYGGHSMSDPGTTYRTRDEIQHMRSKNDPIAGLKMHLI 345
Query: 330 AHDLATEKELKVF 342
+ATE E+K +
Sbjct: 346 DLGIATEAEVKAY 358
|
|
| CGD|CAL0001531 PDA1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
Identities = 167/308 (54%), Positives = 225/308 (73%)
Query: 37 LTIETSVP-FTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCH 95
+TIE + + E P+ S ET + LL ++ M +RRME+AAD+LYK+K +RGFCH
Sbjct: 33 VTIELPASSYEGYNLEVPALSFETEKETLLKMYKDMIIIRRMEMAADALYKSKKIRGFCH 92
Query: 96 LYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGS 155
L GQEA+A+G+E IT D++IT+YR H RG ++ V +ELMGR+ G ++GKGGS
Sbjct: 93 LSVGQEAIAVGIENAITPTDTVITSYRCHGFAFMRGASVKSVLAELMGRRSGIANGKGGS 152
Query: 156 MHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNI 215
MH + +GFYGG+GIVGAQ+PLG GLAF+ KY D+ VTF LYGDGA+NQGQ+FEA N+
Sbjct: 153 MHMFT--NGFYGGNGIVGAQVPLGAGLAFSHKYKNDKAVTFDLYGDGASNQGQVFEAYNM 210
Query: 216 AALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAK 275
A LW+LP I CENN YGMGT+ R++ YYKRG Y+PGLK++GMD LA QA KFAK
Sbjct: 211 AKLWNLPVIFACENNKYGMGTSAARSSAMTEYYKRGQYIPGLKINGMDVLATYQASKFAK 270
Query: 276 EHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLA 334
+ A + NGP++LE +TYRY GHSMSDPG+TYRTR+E+ +R DPI ++ ++L ++A
Sbjct: 271 DWASQGNGPLVLEYETYRYGGHSMSDPGTTYRTREEVQHMRSRNDPIAGLKAVLLEKEIA 330
Query: 335 TEKELKVF 342
+E E+K +
Sbjct: 331 SEDEIKSY 338
|
|
| POMBASE|SPAC26F1.03 pda1 "pyruvate dehydrogenase e1 component alpha subunit Pda1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 175/316 (55%), Positives = 223/316 (70%)
Query: 27 HRPISTDTT-PLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLY 85
H P D P+ ++ SV F ++ + PS +E T ELL + +M T+RR+E+A D+LY
Sbjct: 41 HVPEEHDKPFPVKLDDSV-FEGYKIDVPSTEIEVTKGELLGLYEKMVTIRRLELACDALY 99
Query: 86 KAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRK 145
KAK +RGFCHL GQEAVA G+E IT DSIIT+YR H RG ++ + ELMGR+
Sbjct: 100 KAKKIRGFCHLSIGQEAVAAGIEGAITLDDSIITSYRCHGFAYTRGLSIRSIIGELMGRQ 159
Query: 146 DGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN 205
G S GKGGSMH + K+ FYGG+GIVGAQIPLG G+ FAQKY + T TFALYGDGA+N
Sbjct: 160 CGASKGKGGSMHIFAKN--FYGGNGIVGAQIPLGAGIGFAQKYLEKPTTTFALYGDGASN 217
Query: 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDAL 265
QGQ FEA N+A LW LP I CENN YGMGT+ R++ +YKRG Y+PGL V+GMD L
Sbjct: 218 QGQAFEAFNMAKLWGLPVIFACENNKYGMGTSAERSSAMTEFYKRGQYIPGLLVNGMDVL 277
Query: 266 AVKQACKFAKEHALKNG-PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERI 324
AV QA KFAK++ ++N P+++E TYRY GHSMSDPG+TYR+R+E+ VR RDPIE +
Sbjct: 278 AVLQASKFAKKYTVENSQPLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVRAARDPIEGL 337
Query: 325 RKLILAHDLATEKELK 340
+K I+ +A ELK
Sbjct: 338 KKHIMEWGVANANELK 353
|
|
| WB|WBGene00011510 pdha-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
Identities = 179/327 (54%), Positives = 230/327 (70%)
Query: 17 LKPLTNSFLLHRPISTDTTPLTIETSVPFTSHQCE-APSRSVETTPKELLSFFRQMATMR 75
L+ LT S + + + +T ++ T P H+ + P+ SV ++ L ++R M +R
Sbjct: 25 LQSLTASGIRTQQVRLASTEVSFHTK-PCKLHKLDNGPNTSVTLNREDALKYYRDMQVIR 83
Query: 76 RMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDH-CTFLGRGGTL 134
RME AA +LYK K +RGFCHLY GQEA A+GM+A +T+ D++ITAYR H T+L G T+
Sbjct: 84 RMESAAGNLYKEKKIRGFCHLYSGQEACAVGMKAAMTEGDAVITAYRCHGWTWL-LGATV 142
Query: 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETV 194
EV +EL GR G HGKGGSMH Y K+ FYGG+GIVGAQ PLG G+A A KY + + V
Sbjct: 143 TEVLAELTGRVAGNVHGKGGSMHMYTKN--FYGGNGIVGAQQPLGAGVALAMKYREQKNV 200
Query: 195 TFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYV 254
LYGDGAANQGQLFEA N+A LWDLP + VCENN +GMGT R++ S YY RGDYV
Sbjct: 201 CVTLYGDGAANQGQLFEATNMAKLWDLPVLFVCENNGFGMGTTAERSSASTEYYTRGDYV 260
Query: 255 PGLKVDGMDALAVKQACKFAKEHALKN-GPMILEMDTYRYHGHSMSDPGSTYRTRDEISG 313
PG+ VDGMD LAV++A K+AKE+ GP+++EM TYRYHGHSMSDPG++YRTR+EI
Sbjct: 261 PGIWVDGMDILAVREATKWAKEYCDSGKGPLMMEMATYRYHGHSMSDPGTSYRTREEIQE 320
Query: 314 VRQERDPIERIRKLILAHDLATEKELK 340
VR+ RDPI + I+ LATE+ELK
Sbjct: 321 VRKTRDPITGFKDRIITSSLATEEELK 347
|
|
| UNIPROTKB|G4N7T0 MGG_06371 "Pyruvate dehydrogenase E1 component subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 167/311 (53%), Positives = 223/311 (71%)
Query: 32 TDTTPLTIETS-VPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLV 90
+D P T+ S F +++ + P +++ T K+L + M +R+ME+AAD LYK K +
Sbjct: 49 SDDEPFTVNLSDESFETYELDPPPYTLDVTKKDLKQMYYDMVVVRQMEMAADRLYKEKKI 108
Query: 91 RGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSH 150
RGFCHL GQEAVA+G+E I K D +IT+YR H RGGT+ + EL+GR++G ++
Sbjct: 109 RGFCHLSTGQEAVAVGIEHAINKSDDVITSYRCHGFAYMRGGTVRSIIGELLGRREGIAY 168
Query: 151 GKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLF 210
GKGGSMH + K GFYGG+GIVGAQ+P+G GLAFAQKY+ + + LYGDGA+NQGQ+F
Sbjct: 169 GKGGSMHMFAK--GFYGGNGIVGAQVPVGAGLAFAQKYTGGKKASIILYGDGASNQGQVF 226
Query: 211 EALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQA 270
EA N+A LW+LPA+ CENN YGMGT+ R++ YYKRG Y+PGLKV+GMDALAVK A
Sbjct: 227 EAFNMAKLWNLPALFGCENNKYGMGTSASRSSALTDYYKRGQYIPGLKVNGMDALAVKAA 286
Query: 271 CKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLIL 329
K+ KE NGP++LE TYRY GHSMSDPG+TYRTR+EI +R DPI +++ ++
Sbjct: 287 VKYGKEWTESGNGPLVLEYVTYRYGGHSMSDPGTTYRTREEIQRMRSTNDPIAGLKQKMM 346
Query: 330 AHDLATEKELK 340
D+ TE+ELK
Sbjct: 347 DWDVVTEEELK 357
|
|
| UNIPROTKB|P52900 PDHA "Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial" [Sminthopsis macroura (taxid:9302)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 164/291 (56%), Positives = 213/291 (73%)
Query: 51 EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG 110
E P + T +E L +++ M T+RRME+ AD LYK K++RGFCHLYDGQEA +G+EAG
Sbjct: 21 EGPPTTAVLTREEGLKYYKIMQTVRRMELKADQLYKQKIIRGFCHLYDGQEACCMGLEAG 80
Query: 111 ITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHG 170
I D +ITAYR H RG + E+ +EL GR+ GC+ GKGGSMH Y K+ FYGG+G
Sbjct: 81 INPTDHVITAYRAHGFTYTRGLPVREILAELTGRRGGCAKGKGGSMHMYAKN--FYGGNG 138
Query: 171 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230
IVGAQ+PLG G+A A KY++ + + LYGDGAANQGQ+FEA N+AALW LP I +CENN
Sbjct: 139 IVGAQVPLGVGIALACKYNEKDEICLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 198
Query: 231 HYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKN-GPMILEMD 289
YGMGT+ RAA S YYKRGD++PG+ VDGMD L V++A KFA + GPM++E+
Sbjct: 199 RYGMGTSVERAAASTDYYKRGDFIPGIMVDGMDVLCVREATKFAAAYCRSGKGPMLMELQ 258
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
TYRYHGHSMSDPG +YRTR+EI VR + DPI ++ ++ ++LA+ +ELK
Sbjct: 259 TYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNNNLASIEELK 309
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P26267 | ODPA_ASCSU | 1, ., 2, ., 4, ., 1 | 0.5136 | 0.9281 | 0.8156 | N/A | no |
| Q6Z5N4 | ODPA1_ORYSJ | 1, ., 2, ., 4, ., 1 | 0.8338 | 0.9166 | 0.8179 | yes | no |
| P52899 | ODPA_CAEEL | 1, ., 2, ., 4, ., 1 | 0.5325 | 0.9568 | 0.8387 | yes | no |
| Q8HXW9 | ODPA_MACFA | 1, ., 2, ., 4, ., 1 | 0.5059 | 0.9137 | 0.8153 | N/A | no |
| P29803 | ODPAT_HUMAN | 1, ., 2, ., 4, ., 1 | 0.5601 | 0.8275 | 0.7422 | yes | no |
| P26268 | ODPT_ASCSU | 1, ., 2, ., 4, ., 1 | 0.5151 | 0.9310 | 0.8286 | N/A | no |
| P29804 | ODPA_PIG | 1, ., 2, ., 4, ., 1 | 0.5089 | 0.9137 | 0.8174 | yes | no |
| P35486 | ODPA_MOUSE | 1, ., 2, ., 4, ., 1 | 0.5089 | 0.9137 | 0.8153 | yes | no |
| Q54C70 | ODPA_DICDI | 1, ., 2, ., 4, ., 1 | 0.6046 | 0.8563 | 0.7904 | yes | no |
| O13366 | ODPA_KLULA | 1, ., 2, ., 4, ., 1 | 0.5425 | 0.8936 | 0.7548 | yes | no |
| Q8H1Y0 | ODPA2_ARATH | 1, ., 2, ., 4, ., 1 | 0.8245 | 0.9683 | 0.8575 | yes | no |
| P52901 | ODPA1_ARATH | 1, ., 2, ., 4, ., 1 | 0.8382 | 0.9626 | 0.8611 | no | no |
| P52902 | ODPA_PEA | 1, ., 2, ., 4, ., 1 | 0.8668 | 0.9252 | 0.8110 | N/A | no |
| P52903 | ODPA_SOLTU | 1, ., 2, ., 4, ., 1 | 0.8053 | 0.9568 | 0.8516 | N/A | no |
| Q4UKQ6 | ODPA_RICFE | 1, ., 2, ., 4, ., 1 | 0.4677 | 0.8333 | 0.8895 | yes | no |
| O66112 | ODPA_ZYMMO | 1, ., 2, ., 4, ., 1 | 0.5018 | 0.7701 | 0.7570 | yes | no |
| P16387 | ODPA_YEAST | 1, ., 2, ., 4, ., 1 | 0.5533 | 0.8706 | 0.7214 | yes | no |
| Q10489 | ODPA_SCHPO | 1, ., 2, ., 4, ., 1 | 0.5537 | 0.8936 | 0.7603 | yes | no |
| A7MB35 | ODPA_BOVIN | 1, ., 2, ., 4, ., 1 | 0.5148 | 0.9137 | 0.8153 | yes | no |
| Q1RJX4 | ODPA_RICBR | 1, ., 2, ., 4, ., 1 | 0.4673 | 0.8045 | 0.8588 | yes | no |
| Q9R9N5 | ODPA_RHIME | 1, ., 2, ., 4, ., 1 | 0.5034 | 0.8103 | 0.8103 | yes | no |
| P26284 | ODPA_RAT | 1, ., 2, ., 4, ., 1 | 0.5151 | 0.8965 | 0.8 | yes | no |
| Q92IS3 | ODPA_RICCN | 1, ., 2, ., 4, ., 1 | 0.4689 | 0.8189 | 0.8742 | yes | no |
| Q9ZDR4 | ODPA_RICPR | 1, ., 2, ., 4, ., 1 | 0.4775 | 0.8103 | 0.8650 | yes | no |
| P27745 | ACOA_CUPNH | 1, ., 1, ., 1, ., - | 0.3472 | 0.8160 | 0.8528 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.2.4 | 0.983 |
| 4th Layer | 1.2.4.1 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 348 | |||
| PLN02269 | 362 | PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp | 0.0 | |
| TIGR03182 | 315 | TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E | 1e-146 | |
| pfam00676 | 303 | pfam00676, E1_dh, Dehydrogenase E1 component | 1e-140 | |
| cd02000 | 293 | cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph | 1e-135 | |
| COG1071 | 358 | COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena | 1e-119 | |
| PLN02374 | 433 | PLN02374, PLN02374, pyruvate dehydrogenase (acetyl | 6e-75 | |
| CHL00149 | 341 | CHL00149, odpA, pyruvate dehydrogenase E1 componen | 2e-72 | |
| TIGR03181 | 341 | TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E | 6e-55 | |
| TIGR00239 | 929 | TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenas | 1e-04 | |
| cd02007 | 195 | cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam | 4e-04 | |
| cd02012 | 255 | cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami | 5e-04 | |
| COG3959 | 243 | COG3959, COG3959, Transketolase, N-terminal subuni | 0.001 |
| >gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Score = 693 bits (1790), Expect = 0.0
Identities = 262/308 (85%), Positives = 284/308 (92%)
Query: 33 DTTPLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRG 92
T P+TIET VPF H C+ PSR+VET+ +EL+ FFR M MRRMEIAADSLYKAKL+RG
Sbjct: 1 STDPITIETPVPFKGHLCDPPSRTVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRG 60
Query: 93 FCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGK 152
FCHLYDGQEAVA+GMEA ITK+D+IITAYRDHCT LGRGGT+LEVF+ELMGRKDGCS GK
Sbjct: 61 FCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGK 120
Query: 153 GGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212
GGSMHFYKKD+ FYGGHGIVGAQ+PLG GLAFAQKY+K+E V FALYGDGAANQGQLFEA
Sbjct: 121 GGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEA 180
Query: 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACK 272
LNIAALWDLP I VCENNHYGMGTAEWRAAKSP+YYKRGDYVPGLKVDGMD LAVKQACK
Sbjct: 181 LNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACK 240
Query: 273 FAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHD 332
FAKEHAL NGP++LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIER+RKL+LAH+
Sbjct: 241 FAKEHALSNGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHE 300
Query: 333 LATEKELK 340
LATE ELK
Sbjct: 301 LATEAELK 308
|
Length = 362 |
| >gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 415 bits (1069), Expect = e-146
Identities = 149/283 (52%), Positives = 193/283 (68%), Gaps = 5/283 (1%)
Query: 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITA 120
+ELL +R M +RR E A LY + GFCHLY GQEAVA+G+ A + D +IT+
Sbjct: 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITS 60
Query: 121 YRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGC 180
YRDH L RG EV +EL GR+ GCS GKGGSMH + ++ FYGGHGIVGAQ+PL
Sbjct: 61 YRDHGHALARGVPPKEVMAELTGRETGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLAT 120
Query: 181 GLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR 240
GLAFA KY ++ VT +GDGAANQGQ +E+ N+AALW LP I V ENN Y MGTA R
Sbjct: 121 GLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTAVER 180
Query: 241 AAKSPSYYKRGD--YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297
++ YKRG+ +PG +VDGMD LAV++A K A E A GP++LEM TYR+ GHS
Sbjct: 181 SSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240
Query: 298 MSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
MSDP YR+++E+ R +RDPIE+++ ++ +A+E+ELK
Sbjct: 241 MSDPAK-YRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELK 281
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 315 |
| >gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component | Back alignment and domain information |
|---|
Score = 398 bits (1024), Expect = e-140
Identities = 151/277 (54%), Positives = 196/277 (70%), Gaps = 5/277 (1%)
Query: 69 RQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFL 128
+M T+RRME A D+LY+ K +RGFCHLY GQEA+ +G+ A + D +I YRDH L
Sbjct: 1 YRMMTLRRMEDARDALYQRKGIRGFCHLYAGQEALQVGIAAALNPGDYVIPTYRDHGNLL 60
Query: 129 GRGGTLLEVFSELMGRKDGCSHGKGGSMHFY--KKDSGFYGGHGIVGAQIPLGCGLAFAQ 186
RG +L +V +EL G + GCS GKGGSMH Y K++ FYGG+GIVGAQ+PLG G+A A
Sbjct: 61 ARGVSLEQVMAELTGNEAGCSKGKGGSMHGYYAPKNNRFYGGNGIVGAQVPLGAGIALAA 120
Query: 187 KYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246
KY + V L+GDGA NQGQ FEALN AALW LP I VCENN Y + T R++ S +
Sbjct: 121 KYRGKKEVAITLFGDGATNQGQFFEALNFAALWKLPVIFVCENNQYAISTPAERSSASTT 180
Query: 247 YYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGS 303
Y RG +PG++VDGMD LAV QA KFA E A NGP ++E+ TYRY GHSMSD S
Sbjct: 181 YADRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTGNGPTLIELVTYRYGGHSMSDDPS 240
Query: 304 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
TYRTR+E+ VR+++DPI+R++K +++ + +E+ELK
Sbjct: 241 TYRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELK 277
|
This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303 |
| >gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Score = 386 bits (994), Expect = e-135
Identities = 123/277 (44%), Positives = 162/277 (58%), Gaps = 4/277 (1%)
Query: 67 FFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCT 126
+R M +RR + LY+ + GF HL GQEAVA+G+ A + D + YRDH
Sbjct: 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGH 60
Query: 127 FLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQ 186
L RG L E+ +EL G++ G G+GGSMH K+ F+GG+GIVG Q+PL G A A
Sbjct: 61 ALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL 120
Query: 187 KYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246
KY ++ V +GDGA N+G EALN AALW LP I VCENN Y + T R S
Sbjct: 121 KYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTS 180
Query: 247 YYKRGD--YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGS 303
R +PG++VDG D LAV +A K A E A GP ++E TYR GHS SD S
Sbjct: 181 IADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240
Query: 304 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
YRT++E+ ++RDPI R+RK ++ + TE+EL
Sbjct: 241 RYRTKEEVEE-WKKRDPILRLRKYLIEAGILTEEELA 276
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293 |
| >gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 347 bits (893), Expect = e-119
Identities = 126/295 (42%), Positives = 169/295 (57%), Gaps = 6/295 (2%)
Query: 51 EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG 110
E P + + +ELL +R M +RR + L + + GF HLY GQEAV +G A
Sbjct: 16 ELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAA 75
Query: 111 IT-KKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGH 169
+ +D I YRDH L RG L E+ +EL+G+ G G+GGSMH+ K+ GF GG
Sbjct: 76 LRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGS 135
Query: 170 GIVGAQIPLGCGLAFAQKYSK-DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE 228
GIVG QIPL G A A KY + V A +GDGA NQG EALN AA+W LP + V E
Sbjct: 136 GIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIE 195
Query: 229 NNHYGMGTAEWRAAKSPSYYKRGD--YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMI 285
NN Y + R + R +PG++VDG D LAV +A K A E A GP +
Sbjct: 196 NNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTL 255
Query: 286 LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
+E TYRY GHS SD S YR+++E+ + +RDPI R+RK ++ + +E+EL+
Sbjct: 256 IEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELE 309
|
Length = 358 |
| >gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Score = 237 bits (605), Expect = 6e-75
Identities = 120/292 (41%), Positives = 167/292 (57%), Gaps = 14/292 (4%)
Query: 60 TPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII 118
T +E L + M R E + A Y+ K+ GF HLY+GQEAV+ G + K DS++
Sbjct: 84 TREEGLELYEDMVLGRSFEDMCAQMYYRGKMF-GFVHLYNGQEAVSTGFIKLLKKDDSVV 142
Query: 119 TAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPL 178
+ YRDH L +G V SEL G+ GC G+GGSMH + K+ GG +G IP+
Sbjct: 143 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 202
Query: 179 GCGLAFAQKYSKD-------ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231
G AF+ KY ++ + VT A +GDG N GQ FE LN+AALW LP + V ENN
Sbjct: 203 ATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 262
Query: 232 YGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288
+ +G + RA P +K+G +PG+ VDGMD L V++ K A E A + GP ++E
Sbjct: 263 WAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 322
Query: 289 DTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
+TYR+ GHS++DP R E + RDPI ++K ++ + LATE ELK
Sbjct: 323 ETYRFRGHSLADP-DELRDPAEKAHY-AARDPIAALKKYLIENGLATEAELK 372
|
Length = 433 |
| >gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 2e-72
Identities = 115/310 (37%), Positives = 169/310 (54%), Gaps = 27/310 (8%)
Query: 49 QCEAP---SRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVA 104
+ P S LL + M R E + A Y+ K+ GF HLY+GQEAV+
Sbjct: 4 KVNLPLTNSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMF-GFVHLYNGQEAVS 62
Query: 105 IGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSG 164
G+ + + D + + YRDH L +G V +EL G++ GCS G+GGSMH +
Sbjct: 63 TGVIKLLAETDYVCSTYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHN 122
Query: 165 FYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAANQGQLFEALNIAA 217
F GG +G IP+ G AF Y + VT +GDG N GQ FE LN+A
Sbjct: 123 FLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAV 182
Query: 218 LWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAK 275
LW LP I V ENN + +G A R+ P +K+ + +PG++VDGMD LAV++ K A
Sbjct: 183 LWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAV 242
Query: 276 EHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE-----RDPIERIRKLIL 329
E A + +GP ++E TYR+ GHS++DP DE+ +++ RDPI++++ I+
Sbjct: 243 ERARQGDGPTLIEALTYRFRGHSLADP-------DELRSKQEKEAWVARDPIKKLKSYII 295
Query: 330 AHDLATEKEL 339
++LA++KEL
Sbjct: 296 DNELASQKEL 305
|
Length = 341 |
| >gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 6e-55
Identities = 81/283 (28%), Positives = 136/283 (48%), Gaps = 16/283 (5%)
Query: 60 TPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVAIGMEAGITKKDSII 118
+ +EL+ +R M RR + A +L + +L G GQEA +G + K D +
Sbjct: 22 SDEELVELYRDMVLTRRFDTKALALQRQGRL--GTYAPNLGQEAAQVGSALALRKDDWVF 79
Query: 119 TAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPL 178
+YRDH L RG L+E+ G + G + + + +G Q
Sbjct: 80 PSYRDHAAMLARGVPLVEILLYWRGDERGS---------WDPEGVNILPPNIPIGTQYLH 130
Query: 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAE 238
G+A+A K ++ V +GDG ++G +EALN A ++ P + +NN + +
Sbjct: 131 AAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPR 190
Query: 239 WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHG 295
+ +P+ ++ +PG++VDG D LAV K A E A GP ++E TYR
Sbjct: 191 SKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGP 250
Query: 296 HSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKE 338
H+ +D + YRT++E +++DPI R+RK + L E++
Sbjct: 251 HTTADDPTRYRTKEEEE-EWRKKDPILRLRKYLERKGLWDEEQ 292
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 341 |
| >gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 189 SKDETVTFA--LYGDGA-ANQGQLFEALNIAALWDLP---AILVCENNHYGMGT--AEWR 240
S + T A ++GD A A QG + E LN++ L I + NN G T + R
Sbjct: 338 SPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDAR 397
Query: 241 AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299
+ S + P V+ D AV A + A E+ + +++ YR HGH+ +
Sbjct: 398 STPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEA 457
Query: 300 DPGST 304
D S
Sbjct: 458 DEPSA 462
|
The 2-oxoglutarate dehydrogenase complex consists of this thiamine pyrophosphate-binding subunit (E1), dihydrolipoamide succinyltransferase (E2), and lipoamide dehydrogenase (E3). The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase [Energy metabolism, TCA cycle]. Length = 929 |
| >gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 141 LMGRKDGCSHG--KGGSMHFYKKDSG----FYGGHGIVGAQIPLGCGLAFAQKYSKDETV 194
L GR+D GG F K+ F GH I G+A A+ +
Sbjct: 42 LTGRRDQFHTLRQYGGLSGFTKRSESEYDAFGTGHS--STSISAALGMAVARDLKGKKRK 99
Query: 195 TFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230
A+ GDGA G FEALN A I++ +N
Sbjct: 100 VIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDN 135
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). Length = 195 |
| >gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 14/133 (10%)
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAILV 226
G G+ + G+A A+K + + L GDG +G ++EA + A + L I +
Sbjct: 108 GQGL-----SVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAI 162
Query: 227 CENNHYGMGTAEWRAAKSPSYYKR----GDYVPGLKVDGMDALAVKQACKFAKEHALKNG 282
++N + + K+ G V ++VDG D + A + AK+ K
Sbjct: 163 VDSNRIQIDGPTDDILFTEDLAKKFEAFGWNV--IEVDGHDVEEILAALEEAKKSKGK-- 218
Query: 283 PMILEMDTYRYHG 295
P ++ T + G
Sbjct: 219 PTLIIAKTIKGKG 231
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. Length = 255 |
| >gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAA---LWDLPAI 224
G G+ + G+A K + + GDG ++GQ++EA AA L +L AI
Sbjct: 122 GQGL-----SVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAI 176
Query: 225 L 225
+
Sbjct: 177 V 177
|
Length = 243 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 348 | |||
| KOG0225 | 394 | consensus Pyruvate dehydrogenase E1, alpha subunit | 100.0 | |
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 100.0 | |
| PLN02269 | 362 | Pyruvate dehydrogenase E1 component subunit alpha | 100.0 | |
| CHL00149 | 341 | odpA pyruvate dehydrogenase E1 component alpha sub | 100.0 | |
| PLN02374 | 433 | pyruvate dehydrogenase (acetyl-transferring) | 100.0 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, | 100.0 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) | 100.0 | |
| PF00676 | 300 | E1_dh: Dehydrogenase E1 component; InterPro: IPR00 | 100.0 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, | 100.0 | |
| PRK09404 | 924 | sucA 2-oxoglutarate dehydrogenase E1 component; Re | 100.0 | |
| KOG1182 | 432 | consensus Branched chain alpha-keto acid dehydroge | 100.0 | |
| TIGR00239 | 929 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon | 100.0 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami | 100.0 | |
| PRK12270 | 1228 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 100.0 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 100.0 | |
| COG0567 | 906 | SucA 2-oxoglutarate dehydrogenase complex, dehydro | 99.97 | |
| KOG0450 | 1017 | consensus 2-oxoglutarate dehydrogenase, E1 subunit | 99.97 | |
| KOG0451 | 913 | consensus Predicted 2-oxoglutarate dehydrogenase, | 99.96 | |
| PRK12754 | 663 | transketolase; Reviewed | 99.92 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 99.92 | |
| PTZ00089 | 661 | transketolase; Provisional | 99.92 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 99.92 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 99.91 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 99.91 | |
| PRK12753 | 663 | transketolase; Reviewed | 99.91 | |
| PRK05899 | 624 | transketolase; Reviewed | 99.9 | |
| COG3959 | 243 | Transketolase, N-terminal subunit [Carbohydrate tr | 99.9 | |
| PLN02790 | 654 | transketolase | 99.9 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.9 | |
| PF00456 | 332 | Transketolase_N: Transketolase, thiamine diphospha | 99.88 | |
| cd02017 | 386 | TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam | 99.87 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.86 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.86 | |
| cd02011 | 227 | TPP_PK Thiamine pyrophosphate (TPP) family, Phosph | 99.86 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.84 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 99.82 | |
| TIGR00759 | 885 | aceE pyruvate dehydrogenase E1 component, homodime | 99.81 | |
| TIGR03186 | 889 | AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S | 99.8 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 99.79 | |
| PF13292 | 270 | DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn | 99.78 | |
| COG1154 | 627 | Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m | 99.77 | |
| PRK13012 | 896 | 2-oxoacid dehydrogenase subunit E1; Provisional | 99.76 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 99.74 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.73 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 99.72 | |
| KOG0523 | 632 | consensus Transketolase [Carbohydrate transport an | 99.72 | |
| PRK09405 | 891 | aceE pyruvate dehydrogenase subunit E1; Reviewed | 99.7 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 99.7 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 99.7 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 99.69 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 99.66 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 99.66 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 99.65 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 99.65 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 99.64 | |
| PRK05261 | 785 | putative phosphoketolase; Provisional | 99.64 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 99.64 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 99.63 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 99.62 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 99.62 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 99.6 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 99.6 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, | 99.6 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 99.59 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 99.57 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 99.55 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 99.55 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 99.54 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 99.54 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 99.54 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 99.54 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 99.54 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 99.54 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 99.53 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 99.53 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 99.53 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.52 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 99.52 | |
| PRK07586 | 514 | hypothetical protein; Validated | 99.51 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 99.51 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 99.5 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 99.5 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 99.5 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 99.5 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 99.5 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 99.49 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 99.49 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 99.49 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 99.49 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 99.49 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 99.48 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.48 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 99.48 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 99.48 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 99.48 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 99.47 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.47 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 99.47 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 99.47 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 99.46 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 99.46 | |
| PLN02573 | 578 | pyruvate decarboxylase | 99.46 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 99.46 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 99.46 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 99.46 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 99.46 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 99.46 | |
| PLN02470 | 585 | acetolactate synthase | 99.46 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 99.45 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.45 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 99.44 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 99.42 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 99.42 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 99.42 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 99.41 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 99.4 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 99.39 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 99.39 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 99.39 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.38 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.38 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 99.38 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.37 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 99.35 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 99.34 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 99.3 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 99.19 | |
| COG3961 | 557 | Pyruvate decarboxylase and related thiamine pyroph | 99.1 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.06 | |
| KOG1185 | 571 | consensus Thiamine pyrophosphate-requiring enzyme | 98.99 | |
| COG3960 | 592 | Glyoxylate carboligase [General function predictio | 98.94 | |
| KOG4166 | 675 | consensus Thiamine pyrophosphate-requiring enzyme | 98.85 | |
| COG2609 | 887 | AceE Pyruvate dehydrogenase complex, dehydrogenase | 98.71 | |
| KOG1184 | 561 | consensus Thiamine pyrophosphate-requiring enzyme | 98.42 | |
| COG3962 | 617 | Acetolactate synthase [Amino acid transport and me | 98.36 | |
| COG1013 | 294 | PorB Pyruvate:ferredoxin oxidoreductase and relate | 98.15 | |
| PF09364 | 379 | XFP_N: XFP N-terminal domain; InterPro: IPR018970 | 98.11 | |
| cd03377 | 365 | TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), | 97.62 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 97.51 | |
| COG3957 | 793 | Phosphoketolase [Carbohydrate transport and metabo | 97.06 | |
| COG1165 | 566 | MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car | 96.93 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 96.35 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of | 96.04 | |
| cd07039 | 164 | TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | 95.66 | |
| cd07035 | 155 | TPP_PYR_POX_like Pyrimidine (PYR) binding domain o | 95.46 | |
| PRK09193 | 1165 | indolepyruvate ferredoxin oxidoreductase; Validate | 95.46 | |
| PRK13030 | 1159 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 95.44 | |
| cd07034 | 160 | TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi | 95.43 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai | 95.13 | |
| TIGR03845 | 157 | sulfopyru_alph sulfopyruvate decarboxylase, alpha | 94.19 | |
| PRK13029 | 1186 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 93.87 | |
| PF02776 | 172 | TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter | 93.73 | |
| PRK08659 | 376 | 2-oxoglutarate ferredoxin oxidoreductase subunit a | 93.67 | |
| cd07038 | 162 | TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom | 93.13 | |
| PRK07119 | 352 | 2-ketoisovalerate ferredoxin reductase; Validated | 92.69 | |
| cd07037 | 162 | TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- | 91.95 | |
| PTZ00089 | 661 | transketolase; Provisional | 91.85 | |
| cd07036 | 167 | TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding | 90.58 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 90.11 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 89.89 | |
| PF02779 | 178 | Transket_pyr: Transketolase, pyrimidine binding do | 89.77 | |
| TIGR03710 | 562 | OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s | 89.7 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 89.67 | |
| PF01855 | 230 | POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta | 89.46 | |
| PRK09627 | 375 | oorA 2-oxoglutarate-acceptor oxidoreductase subuni | 89.4 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 89.38 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 89.05 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 88.85 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 88.76 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 88.59 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 88.23 | |
| PRK07586 | 514 | hypothetical protein; Validated | 88.2 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 88.15 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 88.11 | |
| PRK12754 | 663 | transketolase; Reviewed | 87.89 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 87.85 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 87.79 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 87.76 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 87.44 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 87.35 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 87.34 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 87.27 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 87.21 | |
| PRK12753 | 663 | transketolase; Reviewed | 87.17 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 87.0 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 86.91 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 86.91 | |
| PRK08366 | 390 | vorA 2-ketoisovalerate ferredoxin oxidoreductase s | 86.86 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 86.85 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 86.75 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 86.64 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 86.59 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 86.55 | |
| PLN02470 | 585 | acetolactate synthase | 86.51 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 86.43 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 86.23 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 85.93 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 85.93 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 85.88 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 85.75 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 85.71 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 85.64 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 85.6 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 85.49 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 85.43 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 85.29 | |
| PLN02790 | 654 | transketolase | 85.28 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 85.01 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 84.95 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 84.91 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 84.47 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 84.23 | |
| PLN02683 | 356 | pyruvate dehydrogenase E1 component subunit beta | 84.16 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 84.06 | |
| PRK08367 | 394 | porA pyruvate ferredoxin oxidoreductase subunit al | 83.57 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 83.48 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 83.07 | |
| PRK05899 | 624 | transketolase; Reviewed | 83.0 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 82.8 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 82.69 | |
| COG3958 | 312 | Transketolase, C-terminal subunit [Carbohydrate tr | 82.56 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 82.46 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 81.62 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 81.18 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 80.71 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 80.52 |
| >KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-100 Score=712.92 Aligned_cols=329 Identities=64% Similarity=1.057 Sum_probs=310.4
Q ss_pred cccccccccccCCCCCC--CCCcceecCCcccccccccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 018967 16 ILKPLTNSFLLHRPIST--DTTPLTIETSVPFTSHQCEA-PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRG 92 (348)
Q Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~-~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~g 92 (348)
++.|+..+..+++...+ ...+++++++ ||+.|++|. |++...+|+++++++|++|+++|+||.+++++|++|+|+|
T Consensus 11 ~l~~~~~~~~s~~~~~~r~~~~~~~~~~~-~~~~~~l~~~p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRG 89 (394)
T KOG0225|consen 11 LLRPLAQAPPSRTLVNTRLVPSDVTFESS-PFELHKLEEGPSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRG 89 (394)
T ss_pred hhchhhhcCccchhhccccCccccccccc-ceeEEEccCCCCceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhce
Confidence 55555444322222222 3555666665 999999998 9999999999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccc
Q 018967 93 FCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV 172 (348)
Q Consensus 93 f~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~l 172 (348)
|||+|+||||++||+.+++++.|.|+++||+|++.+.+|+++.++|+||+|+.+|+++|+|||||++.+ +|++++|+|
T Consensus 90 FCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIV 167 (394)
T KOG0225|consen 90 FCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIV 167 (394)
T ss_pred eeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHHHHHHHHhccccccccCCCcceeeecc--cccCcccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 599999999
Q ss_pred cchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhcC
Q 018967 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD 252 (348)
Q Consensus 173 G~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g~ 252 (348)
|+|+|+++|+|+|+||++++.++++++|||+.||||+||++|||++|+||+|||||||+|||+|+.++.+.+++|++||.
T Consensus 168 GAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG~ 247 (394)
T KOG0225|consen 168 GAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRGD 247 (394)
T ss_pred ccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHc
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAH 331 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~ 331 (348)
.|||++|||+|+++|++|.++|++|+++ +||+++|+.|||++|||+|||+++||++||++++|++||||+.++++|++.
T Consensus 248 yiPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~ 327 (394)
T KOG0225|consen 248 YIPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIEL 327 (394)
T ss_pred CCCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHh
Confidence 7999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 018967 332 DLATEKELKVFIQLVY 347 (348)
Q Consensus 332 g~~t~~el~~i~~~~~ 347 (348)
+++||+|||+|+++++
T Consensus 328 ~late~ELKai~k~ir 343 (394)
T KOG0225|consen 328 GLATEEELKAIDKEIR 343 (394)
T ss_pred cccCHHHHHHHHHHHH
Confidence 9999999999999987
|
|
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-87 Score=647.94 Aligned_cols=292 Identities=42% Similarity=0.714 Sum_probs=280.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCC-CEEEcCCcchHHHHhcCCC
Q 018967 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKK-DSIITAYRDHCTFLGRGGT 133 (348)
Q Consensus 55 ~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~-D~i~~~yR~~~~~l~~G~~ 133 (348)
....+++++++++|+.|+++|.||+++.+++++|+++||||++.||||++||+..+|+++ ||++|+||+|+++|++|+|
T Consensus 20 ~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~ 99 (358)
T COG1071 20 PNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVP 99 (358)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCC
Confidence 345799999999999999999999999999999999999999999999999999999966 9999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCc-EEEEEeCCccccchhHHHH
Q 018967 134 LLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDET-VTFALYGDGAANQGQLFEA 212 (348)
Q Consensus 134 ~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~-~vv~~~GDGa~~~G~~~Ea 212 (348)
+.++|++++|+.+|+|+||+||||+++++.||++.+++||+|+|+|+|+|+|.||++.+. +++|++|||+++||+|||+
T Consensus 100 ~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEa 179 (358)
T COG1071 100 LKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEA 179 (358)
T ss_pred HHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999555 9999999999999999999
Q ss_pred HHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhc--CCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 213 ln~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
||||++|+||+||||+||+|+||++...++..+.++.+| ||||+++|||||+.+|++++++|++++|+ +||+|||+.
T Consensus 180 lN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~ 259 (358)
T COG1071 180 LNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAV 259 (358)
T ss_pred HHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 999999999999999999999998877777776777564 89999999999999999999999999999 899999999
Q ss_pred EecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 290 t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
|||+.|||++||++.|||+||+++|+ ++|||.+++++|++.|++|++++++|+++++
T Consensus 260 tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~e~~ 316 (358)
T COG1071 260 TYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAK 316 (358)
T ss_pred EeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998 5999999999999999999999999999876
|
|
| >PLN02269 Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-81 Score=614.39 Aligned_cols=295 Identities=85% Similarity=1.380 Sum_probs=285.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCC
Q 018967 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (348)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~ 132 (348)
|.....+++++++++|+.|+++|.||+++.++|++|+++||+|++.||||++||++.+|+++|+++++||+|+++|++|+
T Consensus 21 ~~~~~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~ 100 (362)
T PLN02269 21 PSRTVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGG 100 (362)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCC
Confidence 33345889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHH
Q 018967 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212 (348)
Q Consensus 133 ~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ea 212 (348)
++.++|+|++|+.+|+++|||||||+++++.||++.+++||+++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+
T Consensus 101 ~~~~~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ea 180 (362)
T PLN02269 101 TVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEA 180 (362)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhcCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 213 ln~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
||+|+.|+||+||||+||+|+++++.+++...++++++|+++|+++|||+|+++|+++++.|++++|++||+|||+.|||
T Consensus 181 ln~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~tyR 260 (362)
T PLN02269 181 LNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALSNGPIVLEMDTYR 260 (362)
T ss_pred HHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEECCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 99999999999999999999999998888888889999999999999999999999999999999988889999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 293 YHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 293 ~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
++|||++||+..||+++|++.|++++|||.+|+++|+++|++|++++++|+++++
T Consensus 261 ~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~ 315 (362)
T PLN02269 261 YHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIR 315 (362)
T ss_pred CCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999998789999999999867999999999999999999999999999876
|
|
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-76 Score=577.81 Aligned_cols=293 Identities=39% Similarity=0.691 Sum_probs=280.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCC
Q 018967 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (348)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~ 132 (348)
+.+...+|+++++++|+.|+++|.||+++.+++++|+++||+|++.||||++||++.+|+++|+++++||+|+++|++|+
T Consensus 11 ~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~ 90 (341)
T CHL00149 11 NSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGV 90 (341)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCC
Confidence 44455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCC-------CCcEEEEEeCCcccc
Q 018967 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAAN 205 (348)
Q Consensus 133 ~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~-------~~~~vv~~~GDGa~~ 205 (348)
++.++|+|++|+.+|+++||+||||++.++.++++.+|+||+++|+|+|+|+|.|+++ ++++|||++|||+++
T Consensus 91 ~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~ 170 (341)
T CHL00149 91 PPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTN 170 (341)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhh
Confidence 9999999999999999999999999999999999999999999999999999999987 689999999999999
Q ss_pred chhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhc--CCcceEEEcCCCHHHHHHHHHHHHHHhcc-CC
Q 018967 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NG 282 (348)
Q Consensus 206 ~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~g 282 (348)
+|++||+||+|++|+||+||||+||+|+++++...+...+++++++ ||+++++|||+|+.+|+++++.|++++|+ ++
T Consensus 171 ~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~g 250 (341)
T CHL00149 171 NGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDG 250 (341)
T ss_pred hcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999877666677888864 99999999999999999999999999999 89
Q ss_pred CEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 283 PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 283 P~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
|+|||+.|||+.|||++|++ .||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++
T Consensus 251 P~lIev~tyR~~gHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~ 313 (341)
T CHL00149 251 PTLIEALTYRFRGHSLADPD-ELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQREVK 313 (341)
T ss_pred CEEEEEEEecCCCcCCCCCc-cCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999987 599999999998 6999999999999999999999999999876
|
|
| >PLN02374 pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-75 Score=580.81 Aligned_cols=294 Identities=40% Similarity=0.725 Sum_probs=280.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCC
Q 018967 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (348)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~ 132 (348)
|...+.+++++++++|+.|+++|.||+++.++|++|+++||+|++.||||+++|+..+|+++|+++++||+|+++|++|+
T Consensus 77 ~~~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~ 156 (433)
T PLN02374 77 SASDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGV 156 (433)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCC
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCC-------CCcEEEEEeCCcccc
Q 018967 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAAN 205 (348)
Q Consensus 133 ~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~-------~~~~vv~~~GDGa~~ 205 (348)
++.++|+|++|+.+|+++|+|||||+++++.|+++.+++||.++|+|+|+|+|.|+++ +++++||++|||+++
T Consensus 157 ~~~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~ 236 (433)
T PLN02374 157 PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCN 236 (433)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccc
Confidence 9999999999999999999999999999999999999999999999999999999985 588999999999999
Q ss_pred chhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CC
Q 018967 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NG 282 (348)
Q Consensus 206 ~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~g 282 (348)
+|+|||+||+|++|+||+||||+||+|+++++...++..++++++ +||+|+++|||+|+++|++++++|++++|+ ++
T Consensus 237 eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~g 316 (433)
T PLN02374 237 NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEG 316 (433)
T ss_pred cChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999988777777788876 499999999999999999999999999999 89
Q ss_pred CEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHC
Q 018967 283 PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVYA 348 (348)
Q Consensus 283 P~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~~ 348 (348)
|+|||+.|||++||+++|++ .||+++|+++|+ ++|||.+++++|+++|++|++|+++|++++++
T Consensus 317 P~LIe~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~ 380 (433)
T PLN02374 317 PTLVECETYRFRGHSLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKKIDE 380 (433)
T ss_pred CEEEEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987 599999999998 69999999999999999999999999998863
|
|
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-75 Score=563.55 Aligned_cols=285 Identities=52% Similarity=0.902 Sum_probs=275.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCHHHHHHH
Q 018967 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSE 140 (348)
Q Consensus 61 ~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~ae 140 (348)
+|+++++|+.|+++|.||+++.+++++|+++||+|++.||||+++|++.+|+++||++++||+|+++|++|+++.++|+|
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCC
Q 018967 141 LMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD 220 (348)
Q Consensus 141 l~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~ 220 (348)
++|+++|+++||+||||+++++.|+++.+|+||+++|+|+|+|+|.|++++++++||++|||++++|.++|+||+|++|+
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCcccccccccccCCchHHhhc--CCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCC
Q 018967 221 LPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297 (348)
Q Consensus 221 LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs 297 (348)
||+||||+||+|+++++...+...+++++++ ||+|+++|||+|+++|++++++|++++|+ ++|+|||+.|||++|||
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 240 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCC
Confidence 9999999999999999877777778888864 99999999999999999999999999999 89999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 298 MSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 298 ~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
++|++ .||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++
T Consensus 241 ~~D~~-~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~ 288 (315)
T TIGR03182 241 MSDPA-KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVR 288 (315)
T ss_pred CCCcc-ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 99988 599999999998 6999999999999999999999999999876
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-73 Score=544.29 Aligned_cols=281 Identities=44% Similarity=0.742 Sum_probs=270.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCHHHHHHHHhCCCC
Q 018967 67 FFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKD 146 (348)
Q Consensus 67 ~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~ael~g~~~ 146 (348)
+|++|+++|.||+++.+++++|++.||+|++.||||+++|+..+|+++|+++++||+|+++|++|+++.++|+|++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEE
Q 018967 147 GCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV 226 (348)
Q Consensus 147 g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~V 226 (348)
++++|++||||++.++.++++.+|+||+++|+|+|+|+|.|+.++++++||++|||++++|.++|+||+|++|+||+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCC
Q 018967 227 CENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGS 303 (348)
Q Consensus 227 v~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~ 303 (348)
|+||+|+++++.......+++.++ ++|+++++|||+|+++|++++++|++++|+ ++|+|||+.|||.+|||++||++
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~ 240 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcc
Confidence 999999999987766667788875 499999999999999999999999999998 89999999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHC
Q 018967 304 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVYA 348 (348)
Q Consensus 304 ~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~~ 348 (348)
.||+++|++.|+ ++|||.+|+++|+++|++|++|+++|++++++
T Consensus 241 ~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~ 284 (293)
T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKA 284 (293)
T ss_pred cCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 999999999997 69999999999999999999999999998863
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). |
| >PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-72 Score=538.79 Aligned_cols=277 Identities=39% Similarity=0.630 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCC
Q 018967 70 QMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCS 149 (348)
Q Consensus 70 ~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~ael~g~~~g~~ 149 (348)
.|+++|+||+.+..+|..+++.||+|++.||||+++|+..+|+++|+++++||||+++|++|+++.++|+|++|+..+.+
T Consensus 2 ~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~~ 81 (300)
T PF00676_consen 2 RMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGHG 81 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTSTT
T ss_pred chHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCCC
Confidence 46777777777777777777889999999999999999999999999999999999999999999999999999996555
Q ss_pred CCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEec
Q 018967 150 HGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (348)
Q Consensus 150 ~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~N 229 (348)
.|+. ++|+..++.+|++.++++|.++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|++|+|||||||+|
T Consensus 82 g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveN 160 (300)
T PF00676_consen 82 GGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVEN 160 (300)
T ss_dssp TTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEE
T ss_pred CCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEec
Confidence 5544 455667878899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCC
Q 018967 230 NHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYR 306 (348)
Q Consensus 230 N~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR 306 (348)
|+|+|+|+...++..++++++ +||+|+++|||+|+++|++++++|++++|+ +||+|||++|||++|||++|+++.||
T Consensus 161 N~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr 240 (300)
T PF00676_consen 161 NQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYR 240 (300)
T ss_dssp ESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTS
T ss_pred CCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccC
Confidence 999999999988888777775 599999999999999999999999999999 99999999999999999999999999
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 307 TRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 307 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
+++|++.|++.+|||.+|+++|+++|++|++|+++|+++++
T Consensus 241 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~ 281 (300)
T PF00676_consen 241 SPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIK 281 (300)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999998878899999999999999999999999999886
|
Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A .... |
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-69 Score=527.79 Aligned_cols=281 Identities=29% Similarity=0.485 Sum_probs=266.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCHH
Q 018967 56 SVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLL 135 (348)
Q Consensus 56 ~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~ 135 (348)
.+.+|+++++++|++|+++|.||+++.++|++|++ ||+|++.||||++||++.+|+++|+++++||+|+++|++|+++.
T Consensus 18 ~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~ 96 (341)
T TIGR03181 18 APDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLV 96 (341)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHH
Confidence 35689999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHH
Q 018967 136 EVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNI 215 (348)
Q Consensus 136 ~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~ 215 (348)
++|+|++|+.+|.+ ..++.|+++.+++||.++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||+
T Consensus 97 ~~~ae~~g~~~g~~---------~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~t 167 (341)
T TIGR03181 97 EILLYWRGDERGSW---------DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNF 167 (341)
T ss_pred HHHHHhcCcCcCCC---------CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHH
Confidence 99999999886531 246789999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCeEEEEecCCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018967 216 AALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (348)
Q Consensus 216 Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (348)
|++|+||+||||+||+|+++++.......++|.++ +||+++++|||+|+.+|+++++.|++++++ ++|+|||+.|||
T Consensus 168 A~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R 247 (341)
T TIGR03181 168 AGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYR 247 (341)
T ss_pred HhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 99999999999999999998877666667888886 499999999999999999999999999998 899999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 293 YHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 293 ~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
+.||+++|++..||+++|++.|+ ++|||.+|+++|+++|++|++|+++|+++++
T Consensus 248 ~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~ 301 (341)
T TIGR03181 248 LGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAE 301 (341)
T ss_pred CCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 99999999988899999999998 6999999999999999999999999999876
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=517.18 Aligned_cols=303 Identities=19% Similarity=0.244 Sum_probs=271.9
Q ss_pred CCCcceecC-------CcccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHH
Q 018967 33 DTTPLTIET-------SVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (348)
Q Consensus 33 ~~~~~~~~~-------~~~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~v 105 (348)
.+.++.+|+ ...|+..++|.+.. .+|+++++++|+.|+++|.||+++..+|..+|+. +++|||++++
T Consensus 155 Ycg~ig~E~~hi~~~~er~Wl~~~iE~~~~--~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf----~~eG~Ea~i~ 228 (924)
T PRK09404 155 YCGSIGVEYMHISDPEERRWLQQRIESGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRF----SLEGGESLIP 228 (924)
T ss_pred hcccHhheeccCCCHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc----cccchhhHHH
Confidence 466666663 12699999996443 9999999999999999999999999999988874 4799999999
Q ss_pred HHHh------cCCCCCEEEc-CCcchHHHHh--cCCCHHHHHHHHhCCC-------CCCCC----------CCCCCcCCC
Q 018967 106 GMEA------GITKKDSIIT-AYRDHCTFLG--RGGTLLEVFSELMGRK-------DGCSH----------GKGGSMHFY 159 (348)
Q Consensus 106 g~~~------~l~~~D~i~~-~yR~~~~~l~--~G~~~~~~~ael~g~~-------~g~~~----------G~ggs~h~~ 159 (348)
|+.. +++++|++++ +||||+++|+ +|+|+.++|+|++|+. +|.++ |++|+||+.
T Consensus 229 gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~ 308 (924)
T PRK09404 229 MLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLS 308 (924)
T ss_pred HHHHHHHHHHhCCCCCEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEee
Confidence 9988 6668999999 6999999999 5999999999999997 44444 677788877
Q ss_pred CCCCCccCCCccccchhHHHHHHHHHHHhCCCC------cEEEEEeCCccc-cchhHHHHHHHHHHCCCC---eEEEEec
Q 018967 160 KKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE------TVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCEN 229 (348)
Q Consensus 160 ~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~------~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vI~Vv~N 229 (348)
.. .+.+++|.+.|+|+|.|+|.|+++.+ .++||++||||+ +||.|+|+||||++|+|| +||||+|
T Consensus 309 l~-----~npShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveN 383 (924)
T PRK09404 309 LA-----FNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVIN 383 (924)
T ss_pred cc-----CCccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEe
Confidence 64 25699999999999999999999888 899999999998 899999999999999998 9999999
Q ss_pred CCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCC
Q 018967 230 NHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYR 306 (348)
Q Consensus 230 N~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR 306 (348)
|+|+++|+...+.+.+..+++ +||+|+++|||+|+++|++|+++|++++|+ +||+|||++|||++||+++|++. ||
T Consensus 384 Nq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr 462 (924)
T PRK09404 384 NQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FT 462 (924)
T ss_pred CCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CC
Confidence 999999987776655555554 599999999999999999999999999999 99999999999999999999985 99
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 307 TRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 307 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
+++|++.|++++|||.+|+++|+++|++|++|+++|+++++
T Consensus 463 ~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~ 503 (924)
T PRK09404 463 QPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYR 503 (924)
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999877899999999999999999999999999876
|
|
| >KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-62 Score=456.77 Aligned_cols=294 Identities=29% Similarity=0.437 Sum_probs=281.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCC
Q 018967 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (348)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~ 132 (348)
++..+.++++-.++||++|++...||.-+-+-.+||+| .||..+.|.||+-+|.+++|.+.|.|++.||.-|..|.||.
T Consensus 77 ~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRi-SFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgf 155 (432)
T KOG1182|consen 77 KSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRI-SFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGF 155 (432)
T ss_pred cccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceE-EEEEeccchhhhhhhhhhhCCcccccccccccCceEEEcCc
Confidence 56779999999999999999999999999888999998 79999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCC-cEEEEEeCCccccchhHHH
Q 018967 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE-TVTFALYGDGAANQGQLFE 211 (348)
Q Consensus 133 ~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~-~~vv~~~GDGa~~~G~~~E 211 (348)
++++++.+++|+.....+||++++|+++.++||+..++++..|+|.|+|+|+|.|+.+.+ +++||++|||++++|++|.
T Consensus 156 tle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA 235 (432)
T KOG1182|consen 156 TLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHA 235 (432)
T ss_pred cHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhh
Confidence 999999999999999999999999999999999999999999999999999999977655 8999999999999999999
Q ss_pred HHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhc--CCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018967 212 ALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (348)
Q Consensus 212 aln~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (348)
++|+|+....|+||+|-||+|+|+||...++..+.++.+| ||+..++|||||+++|+.|+++|.+.+-+ ++|+|||+
T Consensus 236 ~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEa 315 (432)
T KOG1182|consen 236 AFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEA 315 (432)
T ss_pred hhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhh
Confidence 9999999999999999999999999999888777776665 99999999999999999999999999988 89999999
Q ss_pred EEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 289 DTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 289 ~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
.|||.+.||+|||.+.||+.+|++.|.+.+.||.+||+++.++|+|+|+...++.++++
T Consensus 316 mtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~r 374 (432)
T KOG1182|consen 316 MTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIR 374 (432)
T ss_pred hhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888775
|
|
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-56 Score=470.20 Aligned_cols=309 Identities=19% Similarity=0.234 Sum_probs=273.8
Q ss_pred CCCcceecCC-------cccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHH
Q 018967 33 DTTPLTIETS-------VPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (348)
Q Consensus 33 ~~~~~~~~~~-------~~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~v 105 (348)
.+.++.+|+. ..|+..++|.+. ...+|+++.+++++.|+.+..||.++...|...|.. +.+|.|++.+
T Consensus 154 YCg~ig~E~~hi~~~~~r~Wl~~~iE~~~-~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip 228 (929)
T TIGR00239 154 YCGSIGAEYMHITSTEEKRWLQQRIESGE-RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRF----SLEGLDALVP 228 (929)
T ss_pred hcCcceeeeecCCCHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcee----ecccHHHHHH
Confidence 4666666631 269999999765 789999999999999999999999999999865543 3699999998
Q ss_pred HHHhcCC------CCCEEEcC-CcchHHHHh--cCCCHHHHHHHHhCCCCC-CCCCCCCC-cCCCC-----------CCC
Q 018967 106 GMEAGIT------KKDSIITA-YRDHCTFLG--RGGTLLEVFSELMGRKDG-CSHGKGGS-MHFYK-----------KDS 163 (348)
Q Consensus 106 g~~~~l~------~~D~i~~~-yR~~~~~l~--~G~~~~~~~ael~g~~~g-~~~G~ggs-~h~~~-----------~~~ 163 (348)
++...++ .+|+++++ ||||+++|+ +|+|++++|+|+.|+..+ .+.|+|+. +|++. ...
T Consensus 229 ~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~ 308 (929)
T TIGR00239 229 MLKEIIRHSVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHL 308 (929)
T ss_pred HHHHHHHHHHHcCCCeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCccee
Confidence 8766554 68999997 999999999 999999999999998765 34588887 99995 456
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCC------CcEEEEEeCCccc-cchhHHHHHHHHHHCCCCe---EEEEecCCcc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD------ETVTFALYGDGAA-NQGQLFEALNIAALWDLPA---ILVCENNHYG 233 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~------~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPv---I~Vv~NN~~~ 233 (348)
++.+++++|+++.|+++|.|+|.|+++. +.++||++||||+ +||.|+|+||+|++|++|+ ||||+||+||
T Consensus 309 ~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg 388 (929)
T TIGR00239 309 ALAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIG 388 (929)
T ss_pred eecCCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE
Confidence 7889999999999999999999998865 5799999999996 8999999999999999997 9999999999
Q ss_pred cccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHH
Q 018967 234 MGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDE 310 (348)
Q Consensus 234 i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e 310 (348)
++|+...+...+.++++ +||+|+++|||+|+++|++|++.|++++|+ +||+|||++|||++|||++|+++.||+ +|
T Consensus 389 ~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~ 467 (929)
T TIGR00239 389 FTTNPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LM 467 (929)
T ss_pred EEEcHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HH
Confidence 99986665555555554 599999999999999999999999999999 999999999999999999999988887 88
Q ss_pred HHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 311 ISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 311 ~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
++.|++++||+.+|+++|+++|++|++|+++|+++++
T Consensus 468 ~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~ 504 (929)
T TIGR00239 468 YQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYR 504 (929)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8888877999999999999999999999999999876
|
The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. |
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=390.77 Aligned_cols=229 Identities=23% Similarity=0.286 Sum_probs=206.4
Q ss_pred HHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCC------CCEEEcC-CcchHHHHh--cCCCHHHHHHHHhCCCC-
Q 018967 77 MEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITK------KDSIITA-YRDHCTFLG--RGGTLLEVFSELMGRKD- 146 (348)
Q Consensus 77 ~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~------~D~i~~~-yR~~~~~l~--~G~~~~~~~ael~g~~~- 146 (348)
||+++...|...|. + .++|+|++++++...+++ +|+++++ ||||+++|+ +|+|++++|+|++|+.+
T Consensus 1 ~e~f~~~~f~~~kr---f-s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~ 76 (265)
T cd02016 1 FEQFLATKFPGQKR---F-GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF 76 (265)
T ss_pred ChhhHHHhcCCCeE---E-EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence 68888888875442 2 289999999999999987 7999997 999999999 99999999999999877
Q ss_pred --CCCCCCCCCcCCCCCC-----------CCccCCCccccchhHHHHHHHHHHHhCC-----CCcEEEEEeCCccc-cch
Q 018967 147 --GCSHGKGGSMHFYKKD-----------SGFYGGHGIVGAQIPLGCGLAFAQKYSK-----DETVTFALYGDGAA-NQG 207 (348)
Q Consensus 147 --g~~~G~ggs~h~~~~~-----------~~~~~~~g~lG~~lp~A~G~A~A~k~~~-----~~~~vv~~~GDGa~-~~G 207 (348)
+.+.|++.++|++.+. .++.+++++||+++|+|+|+|+|.|+++ .+.++||++||||+ +||
T Consensus 77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG 156 (265)
T cd02016 77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQG 156 (265)
T ss_pred CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCC
Confidence 5556777899998765 5678999999999999999999999998 47899999999995 799
Q ss_pred hHHHHHHHHHHCCCC---eEEEEecCCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-C
Q 018967 208 QLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-N 281 (348)
Q Consensus 208 ~~~Ealn~Aa~~~LP---vI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~ 281 (348)
.|+|+||+|++|++| +||||+||+|+++|+.+++...+.++++ +|++|+++|||+|+++|++++++|++++|+ +
T Consensus 157 ~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~ 236 (265)
T cd02016 157 VVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFK 236 (265)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999 9999999999999998877777667765 499999999999999999999999999999 9
Q ss_pred CCEEEEEEEecCCCCCCCCCCCCCCCHHH
Q 018967 282 GPMILEMDTYRYHGHSMSDPGSTYRTRDE 310 (348)
Q Consensus 282 gP~lIe~~t~R~~GHs~~D~~~~YR~~~e 310 (348)
||+|||++|||++||+++|+++ |++|.+
T Consensus 237 gp~lIe~~tYR~~GHse~D~p~-~t~p~m 264 (265)
T cd02016 237 KDVVIDLVCYRRHGHNELDEPS-FTQPLM 264 (265)
T ss_pred CCEEEEEEEecCCCCCCcCCcc-ccCCCc
Confidence 9999999999999999999985 887654
|
OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. |
| >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=323.67 Aligned_cols=296 Identities=20% Similarity=0.243 Sum_probs=250.5
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC------CCCEE
Q 018967 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSI 117 (348)
Q Consensus 44 ~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~------~~D~i 117 (348)
.|.+.++|.| ....++++.+.+++.+..+..||.++...|..+|. | +.+|-|.+...+...|. -+.++
T Consensus 477 ~W~Q~rvE~~--~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkR--F--slEG~Es~iplld~~~~~aa~~~l~evv 550 (1228)
T PRK12270 477 RWLQERVERP--HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKR--F--SLEGGESLIPLLDAVLDQAAEHGLDEVV 550 (1228)
T ss_pred HHHHHHhhCC--CCCCCHHHHHHHHHHhhhHHHHHHHHhhhccccee--e--eecchhhHHHHHHHHHHHHHhcCCceEE
Confidence 6999999965 56788999999999999999999999999985443 2 46899998887766665 35678
Q ss_pred Ec-CCcchHHHHh--cCCCHHHHHHHHhCCCCCC-CCCCCC-CcCCCCCC-----------CCccCCCccccchhHHHHH
Q 018967 118 IT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGC-SHGKGG-SMHFYKKD-----------SGFYGGHGIVGAQIPLGCG 181 (348)
Q Consensus 118 ~~-~yR~~~~~l~--~G~~~~~~~ael~g~~~g~-~~G~gg-s~h~~~~~-----------~~~~~~~g~lG~~lp~A~G 181 (348)
|+ .|||+.++|+ .|++..++|.|+-|+-... ..|.|. ..|++... ..+..+.++|.+.-|+.-|
T Consensus 551 igm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleG 630 (1228)
T PRK12270 551 IGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEG 630 (1228)
T ss_pred ecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhh
Confidence 88 7999999999 6999999999999986543 334433 36776421 1345678999999999999
Q ss_pred HHHHHHhCC------CCcEEEEEeCCccc-cchhHHHHHHHHHHCCCC---eEEEEecCCccccccccc--cc-CCchHH
Q 018967 182 LAFAQKYSK------DETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEWR--AA-KSPSYY 248 (348)
Q Consensus 182 ~A~A~k~~~------~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vI~Vv~NN~~~i~~~~~~--~~-~~~~~~ 248 (348)
++.|.|..- -..+.|+++||+++ +||+++|+||+|.+|++| +||||+||++|++|+... ++ -.+|++
T Consensus 631 ivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~a 710 (1228)
T PRK12270 631 IVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVA 710 (1228)
T ss_pred hhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHH
Confidence 999987542 24589999999996 899999999999999999 899999999999997653 33 234555
Q ss_pred hhcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHH
Q 018967 249 KRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL 327 (348)
Q Consensus 249 ~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~ 327 (348)
+ ++++|+++|||+||++|.++.+.|++|+++ ++|+|||+.|||++||++.|||+ +.+|.+|..+...+...+.|++.
T Consensus 711 k-~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPS-mtqP~mY~~i~~~~svrk~yte~ 788 (1228)
T PRK12270 711 K-MIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPS-MTQPLMYDLIDAKRSVRKLYTEA 788 (1228)
T ss_pred h-hcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcc-cCCchhhhhhhhcchHHHHHHHH
Confidence 4 799999999999999999999999999999 99999999999999999999996 78888888887667778899999
Q ss_pred HHHcCCCCHHHHHHHHHHHH
Q 018967 328 ILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 328 L~~~g~~t~~el~~i~~~~~ 347 (348)
|+.+|.+|++|++++.++++
T Consensus 789 Ligrgdit~ee~e~~l~dy~ 808 (1228)
T PRK12270 789 LIGRGDITVEEAEQALRDYQ 808 (1228)
T ss_pred HhhcCCCCHHHHHHHHHHHH
Confidence 99999999999999887664
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=305.03 Aligned_cols=231 Identities=20% Similarity=0.207 Sum_probs=190.2
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEE--cCCcch
Q 018967 48 HQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSII--TAYRDH 124 (348)
Q Consensus 48 ~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~--~~yR~~ 124 (348)
..++.|.+...|+.++|.++-. .+|.+- ++..+++.|++|++.|+-.+.+++...++ |+|+++ ++||+|
T Consensus 4 ~~~~~p~d~~~l~~~~l~~l~~---~ir~~~-----~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~~ 75 (581)
T PRK12315 4 EKINSPADLKKLSLDELEQLAS---EIRTAL-----LEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSY 75 (581)
T ss_pred hhcCCHHHHhhCCHHHHHHHHH---HHHHHH-----HHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCchH
Confidence 3455677888888888877654 455543 33456778999999999555444433333 899999 899999
Q ss_pred HHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc
Q 018967 125 CTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA 204 (348)
Q Consensus 125 ~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~ 204 (348)
+|.|++|.++..++.+++|+.+|++++++ |+|.. ...|++|+++|+|+|+|+|.|+++.+.++||++|||++
T Consensus 76 ~~~l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~ 147 (581)
T PRK12315 76 PHKMLTGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSL 147 (581)
T ss_pred HHHHHcCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhh
Confidence 99999999999999999999999999887 44432 25689999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHCCCCeEEEEecCCccccccccc---------ccCCchHHh--hcCCcceEEE-cCCCHHHHHHHHH
Q 018967 205 NQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR---------AAKSPSYYK--RGDYVPGLKV-DGMDALAVKQACK 272 (348)
Q Consensus 205 ~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~---------~~~~~~~~~--~g~gipg~~V-DG~D~~av~~a~~ 272 (348)
++|.+|||||+|+.|++|+||||+||+|+++++... .....+... .+||++++.| ||||+.++.++++
T Consensus 148 ~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~ 227 (581)
T PRK12315 148 SGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFK 227 (581)
T ss_pred hcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHH
Confidence 999999999999999999999999999999876642 112222222 4689999998 9999999999999
Q ss_pred HHHHHhccCCCEEEEEEEecCCCCC
Q 018967 273 FAKEHALKNGPMILEMDTYRYHGHS 297 (348)
Q Consensus 273 ~A~~~ar~~gP~lIe~~t~R~~GHs 297 (348)
+|++ .+||++||++|+|+.|..
T Consensus 228 ~a~~---~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 228 EVKD---IDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred HHHh---CCCCEEEEEEeecCCCCC
Confidence 8764 289999999999999975
|
|
| >COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-31 Score=273.73 Aligned_cols=306 Identities=18% Similarity=0.180 Sum_probs=254.0
Q ss_pred CCCcceecC-------CcccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHH
Q 018967 33 DTTPLTIET-------SVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (348)
Q Consensus 33 ~~~~~~~~~-------~~~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~v 105 (348)
.+.++.+|+ ...|.+.+||. ..+.++.|+.+.+|+.+..+..||.++...|...|.. +.+|.|+..+
T Consensus 141 Ycgsig~E~~hi~~~~~~~Wl~~riE~--~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip 214 (906)
T COG0567 141 YCGSIGVEYMHISDPEEKRWLQERIES--GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRF----SLEGGESLIP 214 (906)
T ss_pred hccceeeeeeccCCHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccc----cccchhhHHH
Confidence 455666552 12699999998 7789999999999999999999999999999854432 3689999998
Q ss_pred HHHhcCC------CCCEEEc-CCcchHHHHh--cCCCHHHHHHHHhCCCCCCCCCCCC-CcCCCC------C----CCCc
Q 018967 106 GMEAGIT------KKDSIIT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCSHGKGG-SMHFYK------K----DSGF 165 (348)
Q Consensus 106 g~~~~l~------~~D~i~~-~yR~~~~~l~--~G~~~~~~~ael~g~~~g~~~G~gg-s~h~~~------~----~~~~ 165 (348)
++...++ .++++++ .|||+.++|+ .|++++.+|.|+.|....... .|. ..|++. . ...+
T Consensus 215 ~l~~~i~~~~~~G~~~vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~-sGDVKYH~G~~~~~~~~~~~v~l~L 293 (906)
T COG0567 215 MLDELIDRAGKQGVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDL-SGDVKYHLGFSSDRQTDGGKVHLSL 293 (906)
T ss_pred HHHHHHHHHHhcCcceEEecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCc-ccccccccccccccccCCCeeEEEe
Confidence 8876654 5789999 7999999998 799999999999996532111 111 244442 1 1134
Q ss_pred cCCCccccchhHHHHHHHHHHHhCCC-----CcEEEEEeCCccc-cchhHHHHHHHHHHCCCC---eEEEEecCCccccc
Q 018967 166 YGGHGIVGAQIPLGCGLAFAQKYSKD-----ETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGT 236 (348)
Q Consensus 166 ~~~~g~lG~~lp~A~G~A~A~k~~~~-----~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vI~Vv~NN~~~i~~ 236 (348)
..++++|....|+..|.+.|.+.... ..+.|.++||.++ +||.+.|+||+....+.- .|++|.||+.|++|
T Consensus 294 a~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTT 373 (906)
T COG0567 294 AFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTT 373 (906)
T ss_pred cCCcchhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCC
Confidence 56789999999999999999886533 3578899999998 899999999999887764 69999999999998
Q ss_pred ccc--cccC-CchHHhhcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHH
Q 018967 237 AEW--RAAK-SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 312 (348)
Q Consensus 237 ~~~--~~~~-~~~~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~ 312 (348)
+.. ++++ ++|+++ ..+.|.++|+|.||+|+..+.+.|++++.. +++++|++.+||.+||++.|+|+ +..+..++
T Consensus 374 sp~~sRSt~Y~TDvAK-m~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs-~TqP~mY~ 451 (906)
T COG0567 374 SPADARSTPYCTDVAK-MIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS-VTQPLMYQ 451 (906)
T ss_pred CcccccCCCCCCChhh-ccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc-ccCHHHHH
Confidence 722 2222 345553 578999999999999999999999999888 99999999999999999999986 89999999
Q ss_pred HHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 313 GVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 313 ~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
.++++..+.+.|.++|+++|++++++++.+.++++
T Consensus 452 ~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r 486 (906)
T COG0567 452 KIKKHPTVRKLYADKLIAEGVISEEEADELVNDYR 486 (906)
T ss_pred HHhcCCChhhhHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999998875
|
|
| >KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=263.39 Aligned_cols=297 Identities=19% Similarity=0.282 Sum_probs=250.0
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC------CCCEE
Q 018967 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSI 117 (348)
Q Consensus 44 ~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~------~~D~i 117 (348)
.|...++|.| +...+|.|+.+-+|..+.+.-+||+++...+..-|..| .+|.|++..|+...++ .+++|
T Consensus 232 nWir~k~EtP-~~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFG----LEGcE~lIP~mK~iiDrS~elGVe~iv 306 (1017)
T KOG0450|consen 232 NWIRQKFETP-GPMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFG----LEGCEVLIPAMKTIIDRSSELGVESIV 306 (1017)
T ss_pred HHHHHhccCC-CccccCHHHHHHHHHHHHHhhHHHHHHhhhCCcccccc----ccchhhhhhHHHHHhhhhhhcCchheE
Confidence 6999999975 78899999999999999999999999999998755545 6999999999877665 57889
Q ss_pred Ec-CCcchHHHHh--cCCCHHHHHHHHhCCCCCCCCCCCC-CcCCCC----CC--------CCccCCCccccchhHHHHH
Q 018967 118 IT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCSHGKGG-SMHFYK----KD--------SGFYGGHGIVGAQIPLGCG 181 (348)
Q Consensus 118 ~~-~yR~~~~~l~--~G~~~~~~~ael~g~~~g~~~G~gg-s~h~~~----~~--------~~~~~~~g~lG~~lp~A~G 181 (348)
++ .|||+.+.|+ .-.|++++|.|+-|.+.. .-|.|. ..|++. +. ..+..++++|.+.-|+.+|
T Consensus 307 iGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~~-DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~G 385 (1017)
T KOG0450|consen 307 IGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAA-DEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMG 385 (1017)
T ss_pred ecCCccchhHHHHHHHhhHHHHHHHhccCCCCC-cCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeec
Confidence 99 6999999998 467999999999985432 224433 356553 11 1356789999999999999
Q ss_pred HHHHHHhCC-----CCcEEEEEeCCccc-cchhHHHHHHHHHHCCCC---eEEEEecCCccccccc--ccccCCchHHhh
Q 018967 182 LAFAQKYSK-----DETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGTAE--WRAAKSPSYYKR 250 (348)
Q Consensus 182 ~A~A~k~~~-----~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vI~Vv~NN~~~i~~~~--~~~~~~~~~~~~ 250 (348)
--.|.++.. .+...|.++||+|+ +||.++|++.+..+.+.- .|+||.|||+|+.|.. .++++...-.++
T Consensus 386 KtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar 465 (1017)
T KOG0450|consen 386 KTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVAR 465 (1017)
T ss_pred hHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHH
Confidence 999988643 44689999999998 899999999987655543 6999999999998743 344444333346
Q ss_pred cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHH
Q 018967 251 GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLIL 329 (348)
Q Consensus 251 g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~ 329 (348)
..+.|.++||++|++||.-+++-|.++..+ ++.++|++++||.+||++.|.|+ |..|-+++.+++++..+..|.+.|+
T Consensus 466 ~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~-FTQPlMYk~I~k~~~~l~~Y~ekLl 544 (1017)
T KOG0450|consen 466 VVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPM-FTQPLMYKQIRKHKPVLQKYAEKLL 544 (1017)
T ss_pred HhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCcc-ccchHHHHHHHcCCcHHHHHHHHHH
Confidence 688999999999999999999999999888 99999999999999999999996 8999999999998999999999999
Q ss_pred HcCCCCHHHHHHHHHHHH
Q 018967 330 AHDLATEKELKVFIQLVY 347 (348)
Q Consensus 330 ~~g~~t~~el~~i~~~~~ 347 (348)
++|.++++|++++.+++.
T Consensus 545 ~egtvs~~evd~~~~k~~ 562 (1017)
T KOG0450|consen 545 SEGTVSQQEVDEEIKKYD 562 (1017)
T ss_pred hcCcccHHHHHHHHHHHH
Confidence 999999999999887653
|
|
| >KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=242.99 Aligned_cols=289 Identities=18% Similarity=0.214 Sum_probs=236.5
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccccCCChhHHHHHHHHhcC------CCCCE
Q 018967 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVAIGMEAGI------TKKDS 116 (348)
Q Consensus 44 ~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~-g~~~gf~h~~~GqEa~~vg~~~~l------~~~D~ 116 (348)
.|...++|. -....+.++++.++-+.|+.+..||.++...|.. ++.+ ..|-|.+..-....| +.+|+
T Consensus 140 ~W~a~nFE~-l~~e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYG-----gEGAESM~aFF~eLl~~sa~~~ie~v 213 (913)
T KOG0451|consen 140 EWLARNFET-LDQEQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYG-----GEGAESMLAFFWELLRDSAQANIEHV 213 (913)
T ss_pred HHHHHHHHH-HHHHHhhHHHHHHHHHHHHhhhhHHHHHHhccchhhhhc-----cccHHHHHHHHHHHHHHHHhcCcceE
Confidence 788888886 3457899999999999999999999999998886 4432 578888754443333 36799
Q ss_pred EEc-CCcchHHHHh--cCCCHHHHHHHHhCCCCCCC------------------CCCCCCcCCCCCCCCccCCCccccch
Q 018967 117 IIT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCS------------------HGKGGSMHFYKKDSGFYGGHGIVGAQ 175 (348)
Q Consensus 117 i~~-~yR~~~~~l~--~G~~~~~~~ael~g~~~g~~------------------~G~ggs~h~~~~~~~~~~~~g~lG~~ 175 (348)
|++ .|||+.+.++ ..+++..+|..+-|....+. +|.++..|. .+.++++++.+.
T Consensus 214 iigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhv-----tMlpNPSHLEAv 288 (913)
T KOG0451|consen 214 IIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHV-----TMLPNPSHLEAV 288 (913)
T ss_pred EEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEE-----EecCChhhhhcc
Confidence 999 6999999997 79999999999999865432 233333332 357889999999
Q ss_pred hHHHHHHHHHHHhCC--------------CCcEEEEEeCCccc-cchhHHHHHHHHHHC--CCC-eEEEEecCCcccccc
Q 018967 176 IPLGCGLAFAQKYSK--------------DETVTFALYGDGAA-NQGQLFEALNIAALW--DLP-AILVCENNHYGMGTA 237 (348)
Q Consensus 176 lp~A~G~A~A~k~~~--------------~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~--~LP-vI~Vv~NN~~~i~~~ 237 (348)
.|+|+|-+.+.+... +..+.|.++|||++ +||.++|++|++... ++. .+++|.||+.|+.++
T Consensus 289 NPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp 368 (913)
T KOG0451|consen 289 NPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTP 368 (913)
T ss_pred CchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCc
Confidence 999999999977542 12368889999997 899999999998543 333 589999999999998
Q ss_pred cccccC---CchHHhhcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHH
Q 018967 238 EWRAAK---SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISG 313 (348)
Q Consensus 238 ~~~~~~---~~~~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~ 313 (348)
.++... +.|+++ .+++|.++|+|.||++|.+|.+.|.+|-|+ .+.++|++.|||.+||++.|+|+ |.+|-++++
T Consensus 369 ~~rGRSs~ycsDiaK-~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~-ftspvmyk~ 446 (913)
T KOG0451|consen 369 GDRGRSSAYCSDIAK-SIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPT-FTSPVMYKE 446 (913)
T ss_pred ccccccchhhhHHHH-HhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCcc-ccChhHHHH
Confidence 776433 245543 578999999999999999999999999999 99999999999999999999985 999999999
Q ss_pred HHhcCCHH-HHHHHHHHHcCCCCHHHHHHHHHHH
Q 018967 314 VRQERDPI-ERIRKLILAHDLATEKELKVFIQLV 346 (348)
Q Consensus 314 ~~~~~DPi-~~~~~~L~~~g~~t~~el~~i~~~~ 346 (348)
+++ |.-+ ..|.++|+++|++||++++++..+.
T Consensus 447 v~a-ReSvPdlya~~L~~eg~~tee~vkE~~~~y 479 (913)
T KOG0451|consen 447 VEA-RESVPDLYAQQLAKEGVLTEEKVKEMRDEY 479 (913)
T ss_pred HHh-hhcccHHHHHHHHhcccccHHHHHHHHHHH
Confidence 984 5544 5689999999999999999998765
|
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=221.25 Aligned_cols=149 Identities=23% Similarity=0.232 Sum_probs=125.6
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCC----------CCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|++|+|+++|+|+|+|.|+.+ .+..|+|++|||+++||++|||+++|+.|+|| +|+||+||++
T Consensus 108 gve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~ 187 (663)
T PRK12754 108 GVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI 187 (663)
T ss_pred CccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCC
Confidence 678889999999999999999999876 37899999999999999999999999999999 5799999999
Q ss_pred ccccccccccCCchHHhh--cCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC-CC-CCCCCC-
Q 018967 233 GMGTAEWRAAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM-SD-PGSTYR- 306 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~-~D-~~~~YR- 306 (348)
+++++.+... ..++.++ +||.++++ |||||++++.+|+++|.+. .++|++|+++|++..|.+. .+ +..+..
T Consensus 188 ~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~--~~~Pt~I~~~T~~g~G~~~~e~~~~~Hg~~ 264 (663)
T PRK12754 188 SIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAV--TDKPSLLMCKTIIGFGSPNKAGTHDSHGAP 264 (663)
T ss_pred ccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhc--CCCCEEEEEEeeeccCccccCCCccccCCC
Confidence 9999887665 4566664 58999999 8999999999999988752 3889999999999999874 22 222222
Q ss_pred -CHHHHHHHH
Q 018967 307 -TRDEISGVR 315 (348)
Q Consensus 307 -~~~e~~~~~ 315 (348)
++||++..+
T Consensus 265 l~~~~~~~~~ 274 (663)
T PRK12754 265 LGDAEIALTR 274 (663)
T ss_pred CCHHHHHHHH
Confidence 566666554
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=221.07 Aligned_cols=149 Identities=24% Similarity=0.298 Sum_probs=123.1
Q ss_pred CCccCCCccccchhHHHHHHHHHHHhCC----------CCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCC
Q 018967 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (348)
Q Consensus 163 ~~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~ 231 (348)
.++..++|++|+++|+|+|+|+|.|+.+ .+.+|+|++|||++++|.+|||+++|+.|+|| +|+||+||+
T Consensus 103 ~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~ 182 (653)
T TIGR00232 103 AGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNR 182 (653)
T ss_pred CCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 3677889999999999999999999863 47889999999999999999999999999999 678899999
Q ss_pred cccccccccccCCchHHhh--cCCcceEEE-cCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCC--CCCCC
Q 018967 232 YGMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSD--PGSTY 305 (348)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~--g~gipg~~V-DG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D--~~~~Y 305 (348)
|+++++.+... ..++.++ ++|+++++| ||||+.++.+|+++|.+ . ++|++|+++|+|++|.+... +..++
T Consensus 183 ~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~---~~~~P~~I~~~T~~g~G~~~~e~~~~~H~ 258 (653)
T TIGR00232 183 ISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKA---SKDKPTLIEVTTTIGFGSPNKAGTHGVHG 258 (653)
T ss_pred eeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecccCcccCCCCcccC
Confidence 99999887665 4566654 589999999 99999999999987754 3 58999999999999987332 22222
Q ss_pred C--CHHHHHHHH
Q 018967 306 R--TRDEISGVR 315 (348)
Q Consensus 306 R--~~~e~~~~~ 315 (348)
. ++||++..+
T Consensus 259 ~~~~~~~~~~~~ 270 (653)
T TIGR00232 259 APLGDEDVKLTK 270 (653)
T ss_pred CCCCHHHHHHHH
Confidence 2 455555543
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=220.69 Aligned_cols=150 Identities=23% Similarity=0.270 Sum_probs=127.7
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCC----------CcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~----------~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|++|+++++|+|+|+|.|+.+. +..|+|++|||++++|.+|||+|+|+.|+|| +|+||+||++
T Consensus 110 gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~ 189 (661)
T PTZ00089 110 GVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKI 189 (661)
T ss_pred CcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCc
Confidence 5566799999999999999999998653 7889999999999999999999999999998 6899999999
Q ss_pred ccccccccccCCchHHhh--cCCcceEEE-cCC-CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC---CC
Q 018967 233 GMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGM-DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS---TY 305 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~--g~gipg~~V-DG~-D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~---~Y 305 (348)
+++++..... ..++.++ ++|++++.| ||| |+.++.+|+++|++. .++|++|+++|+|++||.+.++.. .+
T Consensus 190 ~i~~~~~~~~-~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~--~~~P~~I~~~T~kG~G~~~e~~~~~H~~~ 266 (661)
T PTZ00089 190 TIDGNTDLSF-TEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS--KGKPKLIIVKTTIGYGSSKAGTEKVHGAP 266 (661)
T ss_pred ccccCccccc-CccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc--CCCcEEEEEEeeecCCCCcCCCCCccCCC
Confidence 9998876543 3445443 588889999 999 999999999998863 278999999999999987776542 36
Q ss_pred CCHHHHHHHHh
Q 018967 306 RTRDEISGVRQ 316 (348)
Q Consensus 306 R~~~e~~~~~~ 316 (348)
.+.+|++.+++
T Consensus 267 ~~~~~~~~~~~ 277 (661)
T PTZ00089 267 LGDEDIAQVKE 277 (661)
T ss_pred CCHHHHHHHHH
Confidence 67888887764
|
|
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=189.92 Aligned_cols=126 Identities=26% Similarity=0.306 Sum_probs=107.4
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccC
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK 243 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~ 243 (348)
++..++|++|+++|+|+|+|+|.|+++++++|+|++|||++++|.+||++++|+.+++|+|+||+||+|+++++.+. .
T Consensus 69 ~~~~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~~--~ 146 (195)
T cd02007 69 YDAFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVGT--P 146 (195)
T ss_pred CceECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCCC--H
Confidence 45568999999999999999999999999999999999999999999999999999999999999999998876542 1
Q ss_pred CchHHhhcCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018967 244 SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (348)
Q Consensus 244 ~~~~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (348)
...+...||++.. .|||+|++++.+++++|++ .++|++|+++|++.+|
T Consensus 147 ~~~~~a~G~~~~~-~vdG~d~~~l~~a~~~a~~---~~~P~~I~~~T~kg~g 194 (195)
T cd02007 147 GNLFEELGFRYIG-PVDGHNIEALIKVLKEVKD---LKGPVLLHVVTKKGKG 194 (195)
T ss_pred HHHHHhcCCCccc-eECCCCHHHHHHHHHHHHh---CCCCEEEEEEEecccC
Confidence 1223334555533 5899999999999988764 3899999999999876
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=217.40 Aligned_cols=230 Identities=24% Similarity=0.252 Sum_probs=163.1
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEEc--CCcchH
Q 018967 49 QCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRDHC 125 (348)
Q Consensus 49 ~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~~~ 125 (348)
.++.|.+...++.++|.++- ..+|++=..+.. .. .|+.-++.|---+.+++...++ +.|.++- .|.+.+
T Consensus 3 ~i~~p~dl~~l~~~~l~~la---~~iR~~~i~~~~--~~---~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~ 74 (617)
T TIGR00204 3 LINSPQELRLLSIDELEKLC---DELRRYLLESVS--AS---GGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYP 74 (617)
T ss_pred CCCCHHHHhhCCHHHHHHHH---HHHHHHHHHHHh--cc---CCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHH
Confidence 46677888888888877664 345654443332 22 2444446666666666776777 6786544 588877
Q ss_pred HHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCcc-CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc
Q 018967 126 TFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFY-GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA 204 (348)
Q Consensus 126 ~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~ 204 (348)
+.+..|. . +-|..+ .+.. | -+.|....+.++. .++|++|+++++|+|+|+|.|+++.+.+++|++|||++
T Consensus 75 ~~~~~G~-~-~~l~~~-r~~g----~--l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~ 145 (617)
T TIGR00204 75 HKLLTGR-R-EKFSTL-RQKK----G--LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAI 145 (617)
T ss_pred HHHHhCc-H-HHhcch-hhcC----C--cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCccc
Confidence 7777785 1 112111 1111 1 1234333233333 47899999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccC------------------------C----------------
Q 018967 205 NQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK------------------------S---------------- 244 (348)
Q Consensus 205 ~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~------------------------~---------------- 244 (348)
++|.+|||+|+|+.|+||+|+||+||+++++++....+. .
T Consensus 146 ~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 225 (617)
T TIGR00204 146 TAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMK 225 (617)
T ss_pred ccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhh
Confidence 999999999999999999999999999999876542110 0
Q ss_pred ------chHHhhcCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018967 245 ------PSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 245 ------~~~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (348)
..|.+.||++.+ .|||||+.++.++++.+++. ++|++|+++|.|..|.+..
T Consensus 226 ~~~~~~~~f~~~G~~~~~-~vDGhd~~~l~~al~~ak~~---~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 226 GLVVPGTFFEELGFNYIG-PVDGHDLLELIETLKNAKKL---KGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred hccCccchHHHcCCcEEc-ccCCCCHHHHHHHHHHHhcC---CCCEEEEEEecCCCCCchh
Confidence 013334554433 89999999999999876642 7899999999999997654
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=188.82 Aligned_cols=135 Identities=22% Similarity=0.307 Sum_probs=119.6
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCccccccccccc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA 242 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~~ 242 (348)
++...+|++|+++|.|+|+|+|.++.++++.|+|++|||++++|.++|++++|+.++|| +++|++||+|++..+.....
T Consensus 99 g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~ 178 (255)
T cd02012 99 GVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDIL 178 (255)
T ss_pred CeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhcc
Confidence 66677899999999999999999999999999999999999999999999999999998 77999999999877655444
Q ss_pred CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCC
Q 018967 243 KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD 300 (348)
Q Consensus 243 ~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D 300 (348)
...++.++ ++|++++.|||+|+.++.+++++|.+. .++|++|+++|.|..||+...
T Consensus 179 ~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~--~~~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 179 FTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS--KGKPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred CchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc--CCCCEEEEEEeecccccCccC
Confidence 55677764 589999999999999999999998862 278999999999999999543
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-23 Score=215.62 Aligned_cols=133 Identities=23% Similarity=0.243 Sum_probs=117.0
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCC----------CcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~----------~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|++|+++++|+|+|+|.|+.+. +..|+|++|||++++|.+|||+|+|+.|+|| +|+||+||++
T Consensus 108 gve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~ 187 (663)
T PRK12753 108 GVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGI 187 (663)
T ss_pred CcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 6778899999999999999999998752 6899999999999999999999999999998 6789999999
Q ss_pred ccccccccccCCchHHhh--cCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018967 233 GMGTAEWRAAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (348)
+++++.+... ..++.++ +||++++. |||||+.++++|+++|++. .++|++|+++|++++|++..
T Consensus 188 ~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~--~~~P~~I~~~T~kG~G~~~~ 254 (663)
T PRK12753 188 SIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSV--KDKPSLIICRTIIGFGSPNK 254 (663)
T ss_pred cCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHC--CCCeEEEEEEEeecCCCCcc
Confidence 9999877644 3455553 58899994 9999999999999998862 38899999999999999843
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=213.26 Aligned_cols=148 Identities=24% Similarity=0.297 Sum_probs=125.8
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCC----------CcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~----------~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++...+|++|+++|.|+|+|+|.++.+. ++.|+|++|||++++|.+||++++|+.++|| +|+|++||+|
T Consensus 112 ~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~ 191 (624)
T PRK05899 112 GVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRI 191 (624)
T ss_pred CeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence 5666799999999999999999998776 8899999999999999999999999999999 6799999999
Q ss_pred ccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCC---
Q 018967 233 GMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRT--- 307 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~YR~--- 307 (348)
+++.+.... ..+++.++ ++|++++.|||||+.++.+|+++|++. ++|++|++.|+|++||+..++...|+.
T Consensus 192 ~~~~~~~~~-~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~~---~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~ 267 (624)
T PRK05899 192 SIDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKAS---TKPTLIIAKTIIGKGAPNKEGTHKVHGAPL 267 (624)
T ss_pred ccccccccc-ccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHhc---CCCEEEEEEeEeccCCccccCCCcccCCCC
Confidence 998765532 34577664 589999999999999999999988753 799999999999999986665444543
Q ss_pred -HHHHHHHH
Q 018967 308 -RDEISGVR 315 (348)
Q Consensus 308 -~~e~~~~~ 315 (348)
+++++.+.
T Consensus 268 ~~~~~~~~~ 276 (624)
T PRK05899 268 GAEEIAAAK 276 (624)
T ss_pred CHHHHHHHH
Confidence 56666654
|
|
| >COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-23 Score=185.50 Aligned_cols=213 Identities=19% Similarity=0.188 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccCCChh-HHHHHHHHhcCC--C-------CCEEEcC--CcchHHHHh---
Q 018967 65 LSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQ-EAVAIGMEAGIT--K-------KDSIITA--YRDHCTFLG--- 129 (348)
Q Consensus 65 ~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~Gq-Ea~~vg~~~~l~--~-------~D~i~~~--yR~~~~~l~--- 129 (348)
.++-+....+|+--.++.....+ |+++.+... |-+++-....|+ | .|+++-+ |=..+.+-+
T Consensus 8 ~~L~~~A~~iRr~~v~m~~~~~~----GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae 83 (243)
T COG3959 8 DELERIAREIRRNIVRMLANAGS----GHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAE 83 (243)
T ss_pred HHHHHHHHHHHHHHHHHhcccCC----CCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHH
Confidence 34445556788766655443333 444444444 334444444433 2 4665443 433332221
Q ss_pred cCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCC----CccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Q 018967 130 RGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDS----GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN 205 (348)
Q Consensus 130 ~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~----~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~ 205 (348)
+|+-+++-+. +.++-+|-..++|+. ++..++|+||+++++|+|+|++.|+++.+..|+++.|||+++
T Consensus 84 ~G~~p~eeL~---------~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~ 154 (243)
T COG3959 84 KGYFPEEELE---------TFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELD 154 (243)
T ss_pred cCCCCHHHHH---------HhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccc
Confidence 5554444332 233344433334433 677789999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHCCCC-eEEEEecCCcccccccccccCCchHHh--hcCCcceEEEcCCCHHHHHHHHHHHHHHhccCC
Q 018967 206 QGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNG 282 (348)
Q Consensus 206 ~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~~~~~~~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~g 282 (348)
||++|||+..|+.++|. +|.||+-|........+...+..++.+ ++||...++|||||+.++.+|+..+..- +++
T Consensus 155 EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~--~~r 232 (243)
T COG3959 155 EGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS--KGR 232 (243)
T ss_pred cccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc--CCC
Confidence 99999999999999998 568888888877666555444444444 3577777999999999999999877641 159
Q ss_pred CEEEEEEEec
Q 018967 283 PMILEMDTYR 292 (348)
Q Consensus 283 P~lIe~~t~R 292 (348)
|.+|.++|.+
T Consensus 233 P~~IIa~Tvk 242 (243)
T COG3959 233 PTVIIAKTVK 242 (243)
T ss_pred CeEEEEeccc
Confidence 9999999976
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-22 Score=208.81 Aligned_cols=132 Identities=26% Similarity=0.302 Sum_probs=115.7
Q ss_pred CccCCCccccchhHHHHHHHHHHHh-----CCC-----CcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKY-----SKD-----ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~-----~~~-----~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|++|+++++|+|+|+|.|+ +++ +..|+|++|||++++|++|||+|+|+.|+|| +|+||+||+|
T Consensus 99 gi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~ 178 (654)
T PLN02790 99 GIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHI 178 (654)
T ss_pred CccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCc
Confidence 6788899999999999999999995 443 6899999999999999999999999999998 7899999999
Q ss_pred ccccccccccCCchHHh--hcCCcceEEEcC--CCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 018967 233 GMGTAEWRAAKSPSYYK--RGDYVPGLKVDG--MDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~--~g~gipg~~VDG--~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~ 298 (348)
+++++.+.... .++.+ .+||++++.||| ||+.++.+|++.|++. .++|++|+++|++++|.+.
T Consensus 179 ~i~~~~~~~~~-~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~--~~~P~lI~~~T~kG~G~~~ 245 (654)
T PLN02790 179 SIDGDTEIAFT-EDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAV--TDKPTLIKVTTTIGYGSPN 245 (654)
T ss_pred cccCCcccccc-hhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc--CCCeEEEEEEEeecCCCcc
Confidence 99998775543 34444 358999999988 8999999999988762 3899999999999999874
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=209.81 Aligned_cols=231 Identities=19% Similarity=0.174 Sum_probs=162.5
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEE-Ec-CCcc
Q 018967 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSI-IT-AYRD 123 (348)
Q Consensus 47 ~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i-~~-~yR~ 123 (348)
...++.|.+..+++.++|.++ ...+|..-..+... . .|+...+.|.--+.+.+...++ +.|.+ ++ .|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~~---a~~iR~~~~~~~~~-~----~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~ 78 (580)
T PRK05444 7 LDTINSPADLKKLSEEELPQL---ADEIREFLIDVVSK-T----GGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQA 78 (580)
T ss_pred hhccCCHHHHhcCCHHHHHHH---HHHHHHHHHHHHHh-c----CCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHH
Confidence 445666778888888877655 33466654444432 2 2433345555444555554554 45764 44 4666
Q ss_pred hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCC--cCCCCCC-CCccCCCccccchhHHHHHHHHHHHhC-CCCcEEEEEe
Q 018967 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGS--MHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYS-KDETVTFALY 199 (348)
Q Consensus 124 ~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs--~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~-~~~~~vv~~~ 199 (348)
..+....|. . .++. +.++.|+ .|....+ .++..++|++|+++|+|+|+|+|.|++ ++++.|+|++
T Consensus 79 y~~~~~~g~-~----~~l~------~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~ 147 (580)
T PRK05444 79 YPHKILTGR-R----DRFD------TLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVI 147 (580)
T ss_pred HHHHHHhCc-H----HHhc------CcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEE
Confidence 555555664 1 1221 1122222 3544322 367778999999999999999999998 6889999999
Q ss_pred CCccccchhHHHHHHHHHHCCCCeEEEEecCCccccccccccc---CCchHHh--hcCCcceE-EEcCCCHHHHHHHHHH
Q 018967 200 GDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA---KSPSYYK--RGDYVPGL-KVDGMDALAVKQACKF 273 (348)
Q Consensus 200 GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~---~~~~~~~--~g~gipg~-~VDG~D~~av~~a~~~ 273 (348)
|||++++|.+||++++|+.+++|+|+|++||+|+++++..... ...++.+ +++|++++ .|||+|+.++.+++++
T Consensus 148 GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~ 227 (580)
T PRK05444 148 GDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKN 227 (580)
T ss_pred cccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999887654321 1122222 35888888 5899999999999987
Q ss_pred HHHHhccCCCEEEEEEEecCCCCCCC
Q 018967 274 AKEHALKNGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 274 A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (348)
|++ .++|++|++.|+|.+|.+..
T Consensus 228 a~~---~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 228 AKD---LKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred HHh---CCCCEEEEEEecCCcCCChh
Confidence 764 28999999999999998744
|
|
| >PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=190.87 Aligned_cols=190 Identities=22% Similarity=0.278 Sum_probs=130.2
Q ss_pred CCCCCcCCCCCCC----CccCCCccccchhHHHHHHHHHHHhCC----------CCcEEEEEeCCccccchhHHHHHHHH
Q 018967 151 GKGGSMHFYKKDS----GFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIA 216 (348)
Q Consensus 151 G~ggs~h~~~~~~----~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~A 216 (348)
.+.||...++|+. ++..++|+||+|+++|+|+|+|.|+.+ -+..|+|++|||++++|++|||+.+|
T Consensus 88 r~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A 167 (332)
T PF00456_consen 88 RQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLA 167 (332)
T ss_dssp TSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHH
T ss_pred ccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHH
Confidence 3445544445543 566679999999999999999988642 35789999999999999999999999
Q ss_pred HHCCCC-eEEEEecCCcccccccccccCCchHHh--hcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 217 ALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 217 a~~~LP-vI~Vv~NN~~~i~~~~~~~~~~~~~~~--~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
+.++|. +|+|+++|+.++..+.+.... .++.+ +++|...++| ||||+.++.+|++.|... +++|++|.++|.+
T Consensus 168 ~~~~L~nLi~i~D~N~~q~dg~~~~~~~-~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~--~~kP~~Ii~~Tvk 244 (332)
T PF00456_consen 168 GHYKLDNLIVIYDSNGIQIDGPTDIVFS-EDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKAS--KGKPTVIIARTVK 244 (332)
T ss_dssp HHTT-TTEEEEEEEESEETTEEGGGTHH-SHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHS--TSS-EEEEEEE-T
T ss_pred HHhCCCCEEEEEecCCcccCCCcccccc-hHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhc--CCCCceeecceEE
Confidence 999999 779999999988776554332 24433 3567777998 999999999999998751 2899999999999
Q ss_pred CCCCCCCCC--CCCCC--CHHHHHHHHhc----C-------CHHHHHHHHHHHcCCCCHHHHHHHHH
Q 018967 293 YHGHSMSDP--GSTYR--TRDEISGVRQE----R-------DPIERIRKLILAHDLATEKELKVFIQ 344 (348)
Q Consensus 293 ~~GHs~~D~--~~~YR--~~~e~~~~~~~----~-------DPi~~~~~~L~~~g~~t~~el~~i~~ 344 (348)
.+|.+.... ..++. +.||++..+++ . |....+++...+ |-..++++++.-+
T Consensus 245 G~G~~~~e~~~~~Hg~~l~~ee~~~~k~~lg~~~~~F~V~~eV~~~f~~~~~~-g~~~~~~W~~~~~ 310 (332)
T PF00456_consen 245 GKGVPFMEGTAKWHGSPLTEEEVEQAKKELGWDQEPFEVPEEVYDHFRERIAE-GAKAEAEWKELFA 310 (332)
T ss_dssp TTTSTTTTTSGGGTSS--HHHHHHHHHHHTTSSTSTTCGCHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred ecCchhhcccchhhccCCcHHHHHHHHHHcCCCCCCcccCHHHHHHHHHhhhh-HHHHHHHHHHHHH
Confidence 999965332 22343 56667766532 1 234446655443 5444444444433
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A .... |
| >cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-20 Score=181.18 Aligned_cols=164 Identities=21% Similarity=0.157 Sum_probs=130.0
Q ss_pred CccCCCccccchhHHHHHHHHHHHh-------CCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcccc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMG 235 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~ 235 (348)
++..++|++|+++++|+|+|+|.|+ .+.+..|+|++|||++++|++|||+++|+.++|. +|+|+++|++++.
T Consensus 112 gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qid 191 (386)
T cd02017 112 FWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLD 191 (386)
T ss_pred CeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccC
Confidence 4778899999999999999999998 5577899999999999999999999999999997 7799999999887
Q ss_pred cccccc-cCCchHHh--hcCCcceEEEc----------------------------------------------------
Q 018967 236 TAEWRA-AKSPSYYK--RGDYVPGLKVD---------------------------------------------------- 260 (348)
Q Consensus 236 ~~~~~~-~~~~~~~~--~g~gipg~~VD---------------------------------------------------- 260 (348)
.+.+.. ....++.+ +++|...+.||
T Consensus 192 G~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~ 271 (386)
T cd02017 192 GPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELK 271 (386)
T ss_pred CcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 776653 23344544 35677778997
Q ss_pred -----------------CCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC--C-CCCCCC---CCHHHHHHHHhc
Q 018967 261 -----------------GMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM--S-DPGSTY---RTRDEISGVRQE 317 (348)
Q Consensus 261 -----------------G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~--~-D~~~~Y---R~~~e~~~~~~~ 317 (348)
|||+.+|.+|+.++.+. .++|++|.+.|.+.+|.+. . ++..++ -+++|++..++.
T Consensus 272 ~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~--~~kPt~Iia~TikG~G~~~~~e~~~~~h~~~~~~~~e~~~~~~~ 349 (386)
T cd02017 272 ALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH--KGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRDR 349 (386)
T ss_pred HHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC--CCCCeEEEEeCeecCCCChhccCCcchhcCCCCCHHHHHHHHHH
Confidence 99999999999988852 3789999999999999872 2 333223 377777776644
Q ss_pred CCHHHHHHHHHHH
Q 018967 318 RDPIERIRKLILA 330 (348)
Q Consensus 318 ~DPi~~~~~~L~~ 330 (348)
-+ +.++...+.+
T Consensus 350 lg-~~~~~~~~~~ 361 (386)
T cd02017 350 FG-IPVSDEQLEE 361 (386)
T ss_pred cC-CCCCHHHhcc
Confidence 43 5566666554
|
coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. |
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=198.44 Aligned_cols=234 Identities=20% Similarity=0.202 Sum_probs=159.8
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEE-c-CCcc
Q 018967 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSII-T-AYRD 123 (348)
Q Consensus 47 ~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~-~-~yR~ 123 (348)
...++.|.+...|+.++|.++- ..+|.+=..+.. +.+ |+.-++.|---+.+++...++ |.|.++ . .|.+
T Consensus 9 l~~i~~p~dl~~l~~~~l~~~a---~~iR~~ii~~~~--~~~---GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~ 80 (641)
T PRK12571 9 LDRIKGPADLRALSDAELEQLA---DELRAEVISAVS--ETG---GHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQC 80 (641)
T ss_pred hhhcCCHHHHHhCCHHHHHHHH---HHHHHHHHHHHH--HhC---CCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHH
Confidence 4566678888889888876653 345654443332 222 444446666666666766565 668654 4 5777
Q ss_pred hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCC-CccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCc
Q 018967 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDS-GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (348)
Q Consensus 124 ~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~-~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG 202 (348)
.++.+..|. .+-|..+. +..+ . +.|....+. +-....|+-+.++++|+|+|+|.++.++++.|+|++|||
T Consensus 81 Y~~~~l~g~--~~~l~~~r-~~~~----l--~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG 151 (641)
T PRK12571 81 YPHKILTGR--RDRFRTLR-QKGG----L--SGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDG 151 (641)
T ss_pred HHHHHHhCC--HHHHhhhh-hCCC----c--CCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCc
Confidence 777777775 22222211 1111 1 123332221 101124445677899999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccc-------cCCchH----------------------------
Q 018967 203 AANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRA-------AKSPSY---------------------------- 247 (348)
Q Consensus 203 a~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~-------~~~~~~---------------------------- 247 (348)
++++|.+||++++|+.|++|+|+|++||+|+++.+.... .....|
T Consensus 152 ~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (641)
T PRK12571 152 SLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRAREL 231 (641)
T ss_pred hhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHh
Confidence 999999999999999999999999999999988766411 011001
Q ss_pred --------Hh-hcCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018967 248 --------YK-RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 248 --------~~-~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (348)
.+ .++|+.++ .|||||+.++.+|++.|++. .++|++|+++|.+++|.+..
T Consensus 232 ~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~--~~~P~~I~~~T~kGkG~~~~ 291 (641)
T PRK12571 232 VTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR--ADGPVLVHVVTEKGRGYAPA 291 (641)
T ss_pred hhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC--CCCCEEEEEEecCccCcchh
Confidence 11 24677778 79999999999999988752 28899999999999998743
|
|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=196.26 Aligned_cols=232 Identities=19% Similarity=0.192 Sum_probs=161.9
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEEc--CCcc
Q 018967 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (348)
Q Consensus 47 ~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~ 123 (348)
...++.|.+...++.++|.++-. .+|+.-..+.. +. .|+.-++.|.--+.+++...++ |.|.++- .|..
T Consensus 34 l~~i~~p~dlk~l~~~~l~~la~---~iR~~ii~~~~--~~---~GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~a 105 (677)
T PLN02582 34 LDTINYPIHMKNLSVKELKQLAD---ELRSDVIFNVS--KT---GGHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQS 105 (677)
T ss_pred hhhCCCHHHHhhCCHHHHHHHHH---HHHHHHHHHHH--hc---CCCcCccccHHHHHHHHHHhhCCCCCeEEEECcchH
Confidence 45666787888899998876644 46654433332 22 2544456666666666666665 7787655 5888
Q ss_pred hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCC-CCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCc
Q 018967 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (348)
Q Consensus 124 ~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG 202 (348)
.++.+..|.. ++ |..+ .+..+ -+.|....+ .+...++|++|.++++|+|+|+|.++++.++.++|++|||
T Consensus 106 y~~~~l~gr~-~~-l~~~-r~~g~------l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG 176 (677)
T PLN02582 106 YPHKILTGRR-DK-MHTM-RQTNG------LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDG 176 (677)
T ss_pred HHHHHHHccH-HH-hccc-ccCCC------cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 8888777751 11 1111 11111 123332211 2445679999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHCCCCeEEEEecCCc-cc--------ccccccc-------cCC----------------------
Q 018967 203 AANQGQLFEALNIAALWDLPAILVCENNHY-GM--------GTAEWRA-------AKS---------------------- 244 (348)
Q Consensus 203 a~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i--------~~~~~~~-------~~~---------------------- 244 (348)
++++|++|||+|.|+.|++|+|+||+||+. ++ +...... ..+
T Consensus 177 ~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (677)
T PLN02582 177 AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMH 256 (677)
T ss_pred ccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHH
Confidence 999999999999999999999999999996 33 1111100 000
Q ss_pred ---------------c----hHHhhcCCcceE-EEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC
Q 018967 245 ---------------P----SYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 245 ---------------~----~~~~~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~ 299 (348)
+ -|. ++|+.++ .|||||+.++.++++.+++. . ++|+||+++|.+++|...+
T Consensus 257 ~~~~~~~~~~k~~~~~~~~~~fe--~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 257 ELAAKVDEYARGMISGSGSTLFE--ELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HHHHHHHHHhhhccCccccchHH--HcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChh
Confidence 0 022 2566645 89999999999999988863 2 5999999999999999865
|
|
| >cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-21 Score=175.69 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=134.9
Q ss_pred ChhHHHHHHHHhcCCC-CCEEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchh
Q 018967 98 DGQEAVAIGMEAGITK-KDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQI 176 (348)
Q Consensus 98 ~GqEa~~vg~~~~l~~-~D~i~~~yR~~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~l 176 (348)
.||++.++.....|.. .|.+++.||.+..- ++.+|.++ + ...| .++|......++...+|+||+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~g------l~~lf~qf-s----~~gg--~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEG------MRKLFKQF-S----FPGG--IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHH------HHHHHHhc-C----CCCC--CCCCCcccCCCeeecccchhhHH
Confidence 5899998888788887 58999999877521 25667765 1 2223 56788877779999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhH---HHHHHHHHHCCCC-eEEEEecCCcccccccccc-cCCchHHhh-
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQL---FEALNIAALWDLP-AILVCENNHYGMGTAEWRA-AKSPSYYKR- 250 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~---~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~-~~~~~~~~~- 250 (348)
++|+|+|+ ++++.+|+|++|||++++|.+ ||+.+++...++. ++.|++||+|+|+++.... ....++.++
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999974 568899999999999999996 8888888888888 6688899999999988754 334566664
Q ss_pred -cCCcceEEEcCCCHHHHHHHHHHHHHHhc
Q 018967 251 -GDYVPGLKVDGMDALAVKQACKFAKEHAL 279 (348)
Q Consensus 251 -g~gipg~~VDG~D~~av~~a~~~A~~~ar 279 (348)
+||++.+.|||+|+++|++++++|++++|
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999988765
|
This enzyme requires divalent magnesium ions and TPP for activity. |
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=189.14 Aligned_cols=233 Identities=17% Similarity=0.157 Sum_probs=159.8
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEEc--CCcc
Q 018967 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (348)
Q Consensus 47 ~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~ 123 (348)
...++.|.+...++.++|.++-. .+|+.=..+.. +. .|+.-++.|---+.+++...|+ |.|.++- .|.+
T Consensus 67 l~~i~~p~~~k~l~~~~L~~la~---eiR~~ii~~~~--~~---~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqa 138 (641)
T PLN02234 67 LDTINHPMHMKNLSIKELKVLSD---ELRSDVIFNVS--KT---GGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQS 138 (641)
T ss_pred hhhcCCHHHHhhCCHHHHHHHHH---HHHHHHHHHHh--hc---CCCccccchHHHHHHHHHHhcCCCCCeEEEecchhH
Confidence 33455566666677777766543 46654333322 22 3555557777777777776666 7787655 5777
Q ss_pred hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCC--CcCCCCCC-CCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeC
Q 018967 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGG--SMHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYG 200 (348)
Q Consensus 124 ~~~~l~~G~~~~~~~ael~g~~~g~~~G~gg--s~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~G 200 (348)
.++.+..|..- ++. +.+..| +.|.-..+ .+...++|++|.++++|+|+|+|.++++.++.|+|++|
T Consensus 139 ya~~~ltgr~~-----~l~------t~r~~ggl~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viG 207 (641)
T PLN02234 139 YPHKILTGRRG-----KMK------TIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIG 207 (641)
T ss_pred HHHHHHHhhhh-----hhc------ccccCCCcCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 77777655411 111 111111 23332222 25567899999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHHHHCCCCeEEEEecCCcc------ccccccc---c----------------cCCchHHhhcCCcc
Q 018967 201 DGAANQGQLFEALNIAALWDLPAILVCENNHYG------MGTAEWR---A----------------AKSPSYYKRGDYVP 255 (348)
Q Consensus 201 DGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~------i~~~~~~---~----------------~~~~~~~~~g~gip 255 (348)
||++++|++|||+|.|+..+-++|+|+++|+.. ...+.+. . .....| .++|+.
T Consensus 208 DGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~f--e~fG~~ 285 (641)
T PLN02234 208 DGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLF--EELGFH 285 (641)
T ss_pred cchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHH--HHcCCE
Confidence 999999999999999997776789999999873 2111111 0 001122 246666
Q ss_pred eE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCC
Q 018967 256 GL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDP 301 (348)
Q Consensus 256 g~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~ 301 (348)
.+ .|||||+.++.++++.+++. +.++|++|.++|.++.|.+....
T Consensus 286 ~~g~vDGHd~~~l~~al~~~k~~-~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 286 YVGPVDGHNIDDLVSILETLKST-KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred EEeeECCCCHHHHHHHHHHHHhc-CCCCCEEEEEEEecCCCcchhhc
Confidence 78 89999999999999987642 11589999999999999987654
|
|
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=170.82 Aligned_cols=170 Identities=20% Similarity=0.142 Sum_probs=135.5
Q ss_pred CCcchHHHHhcCCCHH-HHHHHHhCCCC------CCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCC
Q 018967 120 AYRDHCTFLGRGGTLL-EVFSELMGRKD------GCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE 192 (348)
Q Consensus 120 ~yR~~~~~l~~G~~~~-~~~ael~g~~~------g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~ 192 (348)
-||||++...+|.++. .++.+.+|+++ ||+.+.+|.+|+... ++...++++|.++++|.|+++|.+..+++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~~--~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSPL--TVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcccc--cccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5789999999999988 88999998876 888888888877664 56677999999999999999999887665
Q ss_pred cE-EEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCccccccccccc-----------------CCchHHh--hcC
Q 018967 193 TV-TFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA-----------------KSPSYYK--RGD 252 (348)
Q Consensus 193 ~~-vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~-----------------~~~~~~~--~g~ 252 (348)
.+ |++++|||++.++.+ |+|+.|+.+++|++|||+||++.+.|-.+... ...|+.. .++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 44 555999999988875 99999999999999999999985543221110 1123333 357
Q ss_pred CcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018967 253 YVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (348)
Q Consensus 253 gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (348)
|++.+ +++-.|+.++.+++++|+++ +||.+|++.+.=..+
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~~---~Gps~I~~~spC~~~ 211 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKEI---RGFKFIHLLAPCPPG 211 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhC---CCCEEEEEeCCCCCC
Confidence 88776 67888999999999999974 999999998543333
|
|
| >TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=177.17 Aligned_cols=132 Identities=23% Similarity=0.158 Sum_probs=110.7
Q ss_pred CccCCCccccchhHHHHHHHHHHHh-------CCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcccc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMG 235 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~ 235 (348)
++..++|+||.++++|+|+|++.|| ++.++.|+|++|||+++||++|||+.+|+.++|. +|+||++|...+.
T Consensus 183 ~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlD 262 (885)
T TIGR00759 183 FWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLD 262 (885)
T ss_pred CEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Confidence 4667899999999999999999997 5678899999999999999999999999999998 6799999999887
Q ss_pred cccccccC-CchHHh--hcCCcceEEE-----------------------------------------------------
Q 018967 236 TAEWRAAK-SPSYYK--RGDYVPGLKV----------------------------------------------------- 259 (348)
Q Consensus 236 ~~~~~~~~-~~~~~~--~g~gipg~~V----------------------------------------------------- 259 (348)
.+...... ..++.+ +|+|...++|
T Consensus 263 G~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~ 342 (885)
T TIGR00759 263 GPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELK 342 (885)
T ss_pred CccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 76654322 223333 3555555888
Q ss_pred ----------------cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018967 260 ----------------DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (348)
Q Consensus 260 ----------------DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (348)
+|||+.+|++|++.|++. +++|++|.++|.+.+|.+
T Consensus 343 ~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~--~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 343 ALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH--KGQPTVILAKTIKGYGMG 394 (885)
T ss_pred HHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC--CCCCEEEEEeeeecCCCC
Confidence 599999999999988863 268999999999999987
|
WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. |
| >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=178.18 Aligned_cols=133 Identities=20% Similarity=0.179 Sum_probs=109.9
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCC-------CCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcccc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMG 235 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~-------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~ 235 (348)
++..++|+||.++++|+|+|++.||.. .+..|+|++|||+++||++|||+.+|+.++|. +|+||++|...+.
T Consensus 183 ~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlD 262 (889)
T TIGR03186 183 FWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLD 262 (889)
T ss_pred CeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Confidence 466789999999999999999988543 36889999999999999999999999999998 6799999999887
Q ss_pred cccccccC-CchHHh--hcCCcceEEE-----------------------------------------------------
Q 018967 236 TAEWRAAK-SPSYYK--RGDYVPGLKV----------------------------------------------------- 259 (348)
Q Consensus 236 ~~~~~~~~-~~~~~~--~g~gipg~~V----------------------------------------------------- 259 (348)
.+...... ..++.+ +++|...++|
T Consensus 263 G~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~ 342 (889)
T TIGR03186 263 GPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALA 342 (889)
T ss_pred CccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHH
Confidence 76654222 234443 3566666888
Q ss_pred ----------------cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 018967 260 ----------------DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 260 ----------------DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~ 298 (348)
+|||+.+|++|++.|++. +++|++|.++|.+.+|-+.
T Consensus 343 ~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~--~~~PTvIla~TvkG~G~~~ 395 (889)
T TIGR03186 343 ALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH--EGRPTVILAKTMKGFGMGA 395 (889)
T ss_pred HHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC--CCCCEEEEEEeeecCCCCc
Confidence 699999999999999863 3689999999999999754
|
Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. |
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-18 Score=173.24 Aligned_cols=132 Identities=23% Similarity=0.291 Sum_probs=112.7
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCC-----C-----CcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSK-----D-----ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~-----~-----~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|+||+|++.|+|+|+|.++.. + |..|+|++|||++++|..+||..+|+.++|. +|++.++|++
T Consensus 110 GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~I 189 (663)
T COG0021 110 GVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDI 189 (663)
T ss_pred CeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCc
Confidence 577789999999999999999988642 2 3589999999999999999999999999998 7888999999
Q ss_pred ccccccccccCCchHHhh--cCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 018967 233 GMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~ 298 (348)
+|....+..+ ..|..+| +||...+ .+||+|++++.+|+++|+.- +++|++|+|+|.-.+|-..
T Consensus 190 siDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~--~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 190 SIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKAS--TDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred eeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhc--CCCCeEEEEEeeeecCCCC
Confidence 9987766655 3455553 5777778 77999999999999999972 3899999999999998766
|
|
| >PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=162.36 Aligned_cols=218 Identities=24% Similarity=0.316 Sum_probs=143.9
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEEc--CCcchH
Q 018967 49 QCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRDHC 125 (348)
Q Consensus 49 ~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~~~ 125 (348)
.|+.|.+...++.+||.++-. .+|.+=.. . -.+..|.+.++.|---..+++...++ |.|.|+. .|.+..
T Consensus 3 ~I~~p~dlk~ls~~eL~~La~---eiR~~ii~--~---vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~ 74 (270)
T PF13292_consen 3 KINSPEDLKKLSIEELEQLAQ---EIREFIIE--T---VSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYV 74 (270)
T ss_dssp G-SSHHHHTTS-GGGHHHHHH---HHHHHHHH--H---CTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HH
T ss_pred CCCCHHHHHcCCHHHHHHHHH---HHHHHHHH--H---HhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccch
Confidence 456677788899999988765 45654322 1 23345777778898889999999998 7898776 799999
Q ss_pred HHHhcCCCHHHHHHHHhCCCCCCC--CCCCCCcCCCCC---CCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeC
Q 018967 126 TFLGRGGTLLEVFSELMGRKDGCS--HGKGGSMHFYKK---DSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYG 200 (348)
Q Consensus 126 ~~l~~G~~~~~~~ael~g~~~g~~--~G~ggs~h~~~~---~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~G 200 (348)
|-+ +.||...+. +-.+|-.-+..+ ++.. .+.|+-+.++++|+|+|.|.++++++..+|+++|
T Consensus 75 HKi------------LTGR~~~f~TlRq~gGlSGF~~r~ES~~D~-f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIG 141 (270)
T PF13292_consen 75 HKI------------LTGRRDRFHTLRQYGGLSGFPKRSESEYDA-FGAGHSSTSISAALGMAVARDLKGEDRKVVAVIG 141 (270)
T ss_dssp HHH------------CTTTCCCGGGTTSTTS--SS--TTT-TT---S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEE
T ss_pred hhh------------ccCcHHHhchhhhcCCcCCCCCcccCCCCc-ccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 987 455554322 222231112211 1222 3579999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHHHHCCCCeEEEEecCCccccccccccc-------CCc--------------------hHHh----
Q 018967 201 DGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA-------KSP--------------------SYYK---- 249 (348)
Q Consensus 201 DGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~-------~~~--------------------~~~~---- 249 (348)
|||+.-|..+||||-|...+-++|+|++||+.+|+.+....+ ..+ .+.+
T Consensus 142 DGalt~Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~ 221 (270)
T PF13292_consen 142 DGALTGGMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKE 221 (270)
T ss_dssp TTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC------------------------------------
T ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 999999999999999999999999999999999876532100 000 0000
Q ss_pred --hc--------CCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 250 --RG--------DYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 250 --~g--------~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
++ .|+.++ .|||||..++.++++.+++. +||+||++.|
T Consensus 222 s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~---~gPvllHV~T 270 (270)
T PF13292_consen 222 SLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLENAKDI---DGPVLLHVIT 270 (270)
T ss_dssp -------CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCS---SSEEEEEEE-
T ss_pred hhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHHHhcC---CCCEEEEEeC
Confidence 01 244444 78999999999999887753 9999999987
|
|
| >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=169.15 Aligned_cols=228 Identities=21% Similarity=0.254 Sum_probs=165.5
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEEc--CCcch
Q 018967 48 HQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRDH 124 (348)
Q Consensus 48 ~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~~ 124 (348)
..+..|.+...||.+||.++-. .+|.+-.. ...+ .+|..-+..|---..+++...++ |.|.++. .|...
T Consensus 6 ~~i~~P~dLk~ls~~eL~~La~---EiR~~li~--~vS~---~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaY 77 (627)
T COG1154 6 DKINSPADLKKLSIEELPQLAD---EIREFLLE--VVSA---TGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAY 77 (627)
T ss_pred hhcCCHHHHhhCCHHHHHHHHH---HHHHHHHH--Hhcc---CCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccc
Confidence 4556788888999999988865 35543322 2222 35777778899889999999998 7887665 79999
Q ss_pred HHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCC---CCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCC
Q 018967 125 CTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKK---DSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGD 201 (348)
Q Consensus 125 ~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~---~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GD 201 (348)
.|-+..|.. +-|..+- -.+|-.-+..+ ++.+ ...|+-+..++.|+|+|.|..++++++.||+++||
T Consensus 78 pHKiLTGR~--e~f~tlR--------q~~GlsGf~~r~ESe~D~-f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGD 146 (627)
T COG1154 78 PHKILTGRR--EQFDTLR--------QKDGLSGFPKREESEHDW-FGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGD 146 (627)
T ss_pred hhHHhcCch--hhcchhh--------hcCCCCCCCCcccCCCcc-cccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECC
Confidence 998865543 2222221 11111111111 1222 36899999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHH-HCCCCeEEEEecCCccccccccccc-------CCc----------------------------
Q 018967 202 GAANQGQLFEALNIAA-LWDLPAILVCENNHYGMGTAEWRAA-------KSP---------------------------- 245 (348)
Q Consensus 202 Ga~~~G~~~Ealn~Aa-~~~LPvI~Vv~NN~~~i~~~~~~~~-------~~~---------------------------- 245 (348)
||+.-|..+||||.|+ ..+-|+|+|++||+.+|+.+....+ ..+
T Consensus 147 GAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e 226 (627)
T COG1154 147 GALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAE 226 (627)
T ss_pred ccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 9999999999999998 5567899999999999986543100 000
Q ss_pred -----------hHHhhcCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018967 246 -----------SYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 246 -----------~~~~~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (348)
-|.. +|+.++ .|||||++++..+++.+++. ++|+||++.|-++.|...+
T Consensus 227 ~~~K~l~~~~~lFee--lGf~YiGPiDGHni~~Li~~Lk~~kd~---~gPvllHv~T~KGKGY~pA 287 (627)
T COG1154 227 ESIKGLLVPGTLFEE--LGFNYIGPIDGHNLEELIPTLKNAKDL---KGPVLLHVVTKKGKGYKPA 287 (627)
T ss_pred HhhhcccCchhhHHH--hCCeeECCcCCCCHHHHHHHHHHHhcC---CCCEEEEEEecCCCCCChh
Confidence 1111 233333 68999999999999888763 9999999999999998754
|
|
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-16 Score=169.18 Aligned_cols=132 Identities=22% Similarity=0.201 Sum_probs=109.7
Q ss_pred CccCCCccccchhHHHHHHHHHHHh-------CCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcccc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMG 235 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~ 235 (348)
++..++|+||.+++.|+|.|++.|| ...++.|+|++|||+++||++|||+.+|+.++|. +||||++|...+.
T Consensus 197 ~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lD 276 (896)
T PRK13012 197 FWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLD 276 (896)
T ss_pred CEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCcccc
Confidence 3556799999999999999999994 4566889999999999999999999999999998 6799999999877
Q ss_pred cccccccC-CchHHh--hcCCcceEEE--------------------------c--------------------------
Q 018967 236 TAEWRAAK-SPSYYK--RGDYVPGLKV--------------------------D-------------------------- 260 (348)
Q Consensus 236 ~~~~~~~~-~~~~~~--~g~gipg~~V--------------------------D-------------------------- 260 (348)
.+...... ..++.+ +|+|...++| |
T Consensus 277 G~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~ 356 (896)
T PRK13012 277 GPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELA 356 (896)
T ss_pred CccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHH
Confidence 76654322 123333 3566666888 8
Q ss_pred -----------------CCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018967 261 -----------------GMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (348)
Q Consensus 261 -----------------G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (348)
|||+.+|++|++.|++. +++|++|.++|.+.+|-+
T Consensus 357 ~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~--~~~PtvIla~TvkG~G~~ 408 (896)
T PRK13012 357 ALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH--KGQPTVILAKTKKGYGMG 408 (896)
T ss_pred HHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC--CCCCEEEEEEeeecCCCC
Confidence 99999999999988863 368999999999999976
|
|
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=151.66 Aligned_cols=119 Identities=23% Similarity=0.228 Sum_probs=94.9
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Cccccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~~------ 240 (348)
+.|.||+++|.|+|+++|. +++.|||++|||++.+. ..| |.+|+++++|+++||.|| +|++......
T Consensus 51 ~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~ 124 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS-MME-IMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNR 124 (196)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCC
Confidence 4689999999999999885 78899999999999985 444 889999999988776555 5886442111
Q ss_pred ----ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018967 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (348)
Q Consensus 241 ----~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (348)
....+||.+. ++|+++++|+ ++.++.+++++|++.++.++|+|||+.+.+..
T Consensus 125 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~liev~v~~~~ 182 (196)
T cd02013 125 FVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAEGKTTVIEIVCDQEL 182 (196)
T ss_pred cccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCCCCeEEEEEEeCccc
Confidence 1234688874 5999999997 68999999999998666699999999986543
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=167.91 Aligned_cols=224 Identities=16% Similarity=0.117 Sum_probs=165.6
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEEc--CCcc
Q 018967 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (348)
Q Consensus 47 ~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~ 123 (348)
...|+.|.+...|+.+||.++-. .+|.+-.. ... .+.+|.+-++.|---+.+++...++ |.|.|+. .|.+
T Consensus 79 L~~i~~P~dlk~L~~~eL~~La~---EiR~~li~--~v~--s~~GGHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~ 151 (701)
T PLN02225 79 LDSIETPLQLKNLSVKELKLLAD---EIRTELHS--VLW--KKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQT 151 (701)
T ss_pred hhhcCCHHHHhhCCHHHHHHHHH---HHHHHHHH--Hhh--cccCCCcCCCccHHHHHHHHHHHhCCCCCceeecccccc
Confidence 45666788888999999988865 46655332 220 1235777778999999999999998 7898776 7999
Q ss_pred hHHHHhcCCCHHHHHHHHhCCCCCC-CCCCCCCcCCCCC---CCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEe
Q 018967 124 HCTFLGRGGTLLEVFSELMGRKDGC-SHGKGGSMHFYKK---DSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALY 199 (348)
Q Consensus 124 ~~~~l~~G~~~~~~~ael~g~~~g~-~~G~ggs~h~~~~---~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~ 199 (348)
..|-|..|.. ..+ ++-.+|-.-+..+ ++.. .+.||-+..+++|+|+|.|..++++++.||+++
T Consensus 152 Y~HKiLTGR~------------~~f~~Rq~~GlsGf~~r~ES~~D~-f~~GHssTSiSaalG~a~ardl~g~~~~vvaVI 218 (701)
T PLN02225 152 YAHKVLTRRW------------SAIPSRQKNGISGVTSQLESEYDS-FGTGHGCNSISAGLGLAVARDIKGKRDRVVAVI 218 (701)
T ss_pred chhhHhcCCh------------hhcCccccCCcCCCCCCCCCCCCC-CCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 9999865543 211 1112222222221 1222 368999999999999999999999999999999
Q ss_pred CCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccc--------ccccc-----------------------------
Q 018967 200 GDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTA--------EWRAA----------------------------- 242 (348)
Q Consensus 200 GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~--------~~~~~----------------------------- 242 (348)
||||+.-|+.+||||-|+..+-++|+|++||+.+|+.+ ....+
T Consensus 219 GDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~ 298 (701)
T PLN02225 219 DNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKG 298 (701)
T ss_pred cCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999999999998877 21000
Q ss_pred -----------------C-C-chHHhhcCCcceE-EEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 018967 243 -----------------K-S-PSYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (348)
Q Consensus 243 -----------------~-~-~~~~~~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~ 294 (348)
+ . .-|.. +|+.++ .|||||+.++.++++.+++. . +||+||+++|-+..
T Consensus 299 ~~~~~~~~~~~~k~~~~~~~~~lFe~--lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 299 MYEWAAKVDEYARGMVGPTGSTLFEE--LGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred HHHHHHHHHHHhhhccCCCccCcHHH--cCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEecCCC
Confidence 0 0 01111 233333 68999999999999998864 2 49999999998876
|
|
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-17 Score=144.45 Aligned_cols=113 Identities=22% Similarity=0.227 Sum_probs=90.3
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Cccccccccc-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~~----- 240 (348)
+..|.+|+++|.|+|+++|. ++++|||++|||++++. .++|++|++++||+++||.|| +|++......
T Consensus 45 ~~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~ 118 (172)
T cd02004 45 GTFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGL 118 (172)
T ss_pred CCCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccC
Confidence 35689999999999999885 68899999999999975 466999999999987666555 5887653222
Q ss_pred ------ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 241 ------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 241 ------~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
....+||.+. ++|+++.+|+ +++++.++++++.+. ++|+|||+.+
T Consensus 119 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~i 171 (172)
T cd02004 119 GLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALAS---GKPALINVII 171 (172)
T ss_pred CCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHHc---CCCEEEEEEc
Confidence 1234678774 5999999998 588998898888753 8999999975
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-16 Score=156.08 Aligned_cols=132 Identities=24% Similarity=0.331 Sum_probs=112.5
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCC-CcEEEEEeCCccccchhHHHHHHHHHHCCCCe-EEEEecCCcccccccccc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYGDGAANQGQLFEALNIAALWDLPA-ILVCENNHYGMGTAEWRA 241 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~-~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPv-I~Vv~NN~~~i~~~~~~~ 241 (348)
++..++|++|++++.|+|+|++.|+.+. ++.|+|++|||++++|+.|||+++|+.|+|.. |+|.+||+.+++.+.+..
T Consensus 112 ~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~ 191 (632)
T KOG0523|consen 112 GVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLG 191 (632)
T ss_pred CceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCccc
Confidence 4556789999999999999999999988 89999999999999999999999999999995 577778889998877665
Q ss_pred cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018967 242 AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (348)
Q Consensus 242 ~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (348)
+..+-+..| ++|+..+.|||+|++++.+++..|+.- +++|++|-+.|+...|-.
T Consensus 192 ~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~--k~kpt~i~~~t~~g~G~~ 247 (632)
T KOG0523|consen 192 FDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSV--KGKPTAIKATTFIGRGSP 247 (632)
T ss_pred ccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhc--cCCceeeeeeeeeecCcc
Confidence 544333323 478888999999999999999998841 388999999999988754
|
|
| >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-15 Score=159.25 Aligned_cols=226 Identities=22% Similarity=0.184 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCh-hHHHHHHHHhcCCC------CCEEEcCCcchHHHH-----
Q 018967 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDG-QEAVAIGMEAGITK------KDSIITAYRDHCTFL----- 128 (348)
Q Consensus 61 ~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~G-qEa~~vg~~~~l~~------~D~i~~~yR~~~~~l----- 128 (348)
+.++.+.....++...++.-........++.|+-.++.+ -+-..++....|+. +|+|+. .+|+...
T Consensus 77 ~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA~~ 154 (891)
T PRK09405 77 DLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGDLVFF--QGHASPGIYARA 154 (891)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCCEEEE--CchHHHHHHHHH
Confidence 455655555555555444332221111123343222222 23335555666764 687775 3555322
Q ss_pred -hcCC-CHHHHHHHHhCCCCCCCCCCCCCc--CCCC-CCCCccCCCccccchhHHHHHHHHHHHh-------CCCCcEEE
Q 018967 129 -GRGG-TLLEVFSELMGRKDGCSHGKGGSM--HFYK-KDSGFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTF 196 (348)
Q Consensus 129 -~~G~-~~~~~~ael~g~~~g~~~G~ggs~--h~~~-~~~~~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv 196 (348)
..|. +.++ +..+ .+. +.|.+-+. |... |+ .+...++++|.+++.|+|.|++.|| .+.++.|+
T Consensus 155 ~l~G~l~~e~-L~~f-R~~---~~g~gl~syPhp~~~p~-~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~ 228 (891)
T PRK09405 155 FLEGRLTEEQ-LDNF-RQE---VDGKGLSSYPHPWLMPD-FWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVW 228 (891)
T ss_pred HHcCCCCHHH-HHHh-cCC---CCCCCCCCCCCcCCCCC-CeecCccccchhHHHHHHHHHhCccccccccccCCCceEE
Confidence 2453 3333 2222 222 11222223 3221 22 2455789999999999999999995 45678999
Q ss_pred EEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcccccccccccC-CchHHh--hcCCcceEEE-------------
Q 018967 197 ALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAK-SPSYYK--RGDYVPGLKV------------- 259 (348)
Q Consensus 197 ~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~~~-~~~~~~--~g~gipg~~V------------- 259 (348)
|++|||+++||++|||+.+|+.++|. +|+||++|...+..+...... ..++.+ +|+|...++|
T Consensus 229 ~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d 308 (891)
T PRK09405 229 AFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKD 308 (891)
T ss_pred EEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccC
Confidence 99999999999999999999999998 679999999988776653211 223433 3566666888
Q ss_pred -------------c-------------------------------------------CCCHHHHHHHHHHHHHHhccCCC
Q 018967 260 -------------D-------------------------------------------GMDALAVKQACKFAKEHALKNGP 283 (348)
Q Consensus 260 -------------D-------------------------------------------G~D~~av~~a~~~A~~~ar~~gP 283 (348)
| |||+.+|++|++.|++. +++|
T Consensus 309 ~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~--~~~P 386 (891)
T PRK09405 309 TSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH--KGQP 386 (891)
T ss_pred CccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC--CCCC
Confidence 4 99999999999998863 3789
Q ss_pred EEEEEEEecCCCC
Q 018967 284 MILEMDTYRYHGH 296 (348)
Q Consensus 284 ~lIe~~t~R~~GH 296 (348)
++|.++|.+.+|.
T Consensus 387 tvIia~TvkG~G~ 399 (891)
T PRK09405 387 TVILAKTIKGYGM 399 (891)
T ss_pred EEEEEeceecCCC
Confidence 9999999999998
|
|
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=142.36 Aligned_cols=110 Identities=25% Similarity=0.316 Sum_probs=89.9
Q ss_pred ccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc--------
Q 018967 170 GIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-------- 240 (348)
Q Consensus 170 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~-------- 240 (348)
|.+|+++|.|+|+++|. +++.+||++|||+++++. ++|.+|+++++|+++||.||+ |++.+....
T Consensus 49 g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 99999999999999985 578999999999999874 569999999999998888886 887542111
Q ss_pred ---------ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 241 ---------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 241 ---------~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
....+||.+. ++|+++++|++ +.++.+++++|++ .++|+|||+.+
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~---~~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA---EGGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHh---CCCCEEEEEEC
Confidence 0123577774 59999999985 8899999998875 38999999864
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=139.85 Aligned_cols=114 Identities=25% Similarity=0.328 Sum_probs=91.2
Q ss_pred cCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccc-----
Q 018967 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEW----- 239 (348)
Q Consensus 166 ~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~----- 239 (348)
.+..|++|.++|.|+|++++. +++.+|+++|||++.+ ..+++++|+.+++|+++||.||++ ++.....
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 456799999999999999986 5789999999999998 468899999999999988888885 5433221
Q ss_pred -----cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 240 -----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 240 -----~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
.....+++.+. ++|+++++|++ +.++.++++++.+ .++|+|||+.|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~a~~~a~~---~~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALAEALA---AGGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh---CCCCEEEEEEC
Confidence 22234577774 58999999974 7888888888774 38999999975
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=144.13 Aligned_cols=117 Identities=25% Similarity=0.248 Sum_probs=93.4
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~------ 240 (348)
..|++|+++|.|+|+++|. +++.|||++|||++++. . .+|.+|++++||+++||.||+ |++......
T Consensus 55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~-~-~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~ 128 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFM-I-EELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDY 128 (202)
T ss_pred CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhcc-H-HHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcc
Confidence 4699999999999999885 78899999999999885 3 449999999999887777776 776432110
Q ss_pred --------------ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018967 241 --------------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (348)
Q Consensus 241 --------------~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (348)
....+||.+. ++|+++.+|+ ++.++.+++++|++.+++ ++|+|||+.+-+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~ 195 (202)
T cd02006 129 QVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILER 195 (202)
T ss_pred ccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEecc
Confidence 0013688874 5999999996 688999999999875544 899999999854
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=135.82 Aligned_cols=116 Identities=19% Similarity=0.120 Sum_probs=89.7
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~----- 240 (348)
...|.+|+++|.|+|+++|. +++.||++.|||++.+.. .++|.+|+++++|+++||.||+ |++......
T Consensus 48 ~~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~ 122 (178)
T cd02008 48 DTCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGK 122 (178)
T ss_pred cccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcc
Confidence 35799999999999999986 578899999999997532 5679999999999876666555 675432211
Q ss_pred ----ccCCchHHhh--cCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 241 ----AAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 241 ----~~~~~~~~~~--g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
....+||.+. ++|+++++| ++.|..++.+++++|++ .++|+||++..
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~---~~gp~lI~v~~ 176 (178)
T cd02008 123 TLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA---VPGVSVIIAKR 176 (178)
T ss_pred cccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh---CCCCEEEEEeC
Confidence 0123578774 599999998 77888888889988875 38999999864
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-16 Score=137.45 Aligned_cols=115 Identities=25% Similarity=0.325 Sum_probs=91.2
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
++.|.+|+++|.|+|+++|. +++.+|+++|||+++++ +.| |.+|+++++|+++||.||+ |++.+...
T Consensus 48 ~~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~ 121 (178)
T cd02014 48 GLLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQP 121 (178)
T ss_pred CCCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCC
Confidence 34699999999999998875 67899999999999987 566 8889999999988888886 78743211
Q ss_pred ---cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ---~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+++.+|+ ++.++.++++++++ .++|+|||+.+.+
T Consensus 122 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~---~~~p~liev~~~~ 174 (178)
T cd02014 122 EFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA---ADGPVVIDVVTDP 174 (178)
T ss_pred ceeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 01124578774 5999999997 67888888888775 3899999999854
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-16 Score=138.46 Aligned_cols=114 Identities=27% Similarity=0.416 Sum_probs=89.0
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------cc
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------WR 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~~ 240 (348)
+.|.+|+++|.|+|+++|. +++.||+++|||++++. + .+|.+|+++++|+++||.||+ |++.... +.
T Consensus 48 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~ 121 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN-I-QELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGR 121 (186)
T ss_pred CccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc-H-HHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCc
Confidence 4589999999999999885 67899999999999874 3 449999999999987777776 5653211 10
Q ss_pred -----ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 -----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 -----~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. ++|+++++|++ +.++.+++++|.+ .++|+|||+.+.+
T Consensus 122 ~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~---~~~p~liev~~~~ 175 (186)
T cd02015 122 YSHTTLDSNPDFVKLAEAYGIKGLRVEK--PEELEAALKEALA---SDGPVLLDVLVDP 175 (186)
T ss_pred eeeccCCCCCCHHHHHHHCCCceEEeCC--HHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 1134678774 59999999985 7788888887765 3899999999864
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=136.56 Aligned_cols=115 Identities=17% Similarity=0.267 Sum_probs=90.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
++.|.+|+++|.|+|+++|. +++.||+++|||++.+.. ..|.+|+++++|+++||.||+ |++....+
T Consensus 45 ~~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~~--~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~ 118 (177)
T cd02010 45 NGLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMNS--QELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGR 118 (177)
T ss_pred CCChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhHH--HHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 35689999999999999985 788999999999998753 459999999999876665555 87643211
Q ss_pred ---cccCCchHHh--hcCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ---RAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ---~~~~~~~~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+ +++|+++.+|+ +++++.+++++|++ .++|+|||+.+-+
T Consensus 119 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~liev~~~~ 171 (177)
T cd02010 119 DSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA---ADGVHVIDCPVDY 171 (177)
T ss_pred cccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecc
Confidence 0112457877 45999999996 79999999999986 3899999999854
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=136.45 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=98.0
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHC-CCCeEEEEecCC-ccccccccc-ccCCc
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-DLPAILVCENNH-YGMGTAEWR-AAKSP 245 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~-~LPvI~Vv~NN~-~~i~~~~~~-~~~~~ 245 (348)
.|.+|+++|.|+|+++|. +++.|||++|||++++. ..+|.+++++ ++|+++||.||+ |++...... ....+
T Consensus 56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~ 129 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTV 129 (202)
T ss_pred ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCC
Confidence 689999999999999985 78899999999999875 3458888876 789887777775 886332111 12346
Q ss_pred hHHhh--cCCcc-eEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHH
Q 018967 246 SYYKR--GDYVP-GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISG 313 (348)
Q Consensus 246 ~~~~~--g~gip-g~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~ 313 (348)
||.+. ++|++ +++|+ ++.++..+++++++ .++|+|||+.+.+. .+.+...|++.|++.
T Consensus 130 Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~i~~~-----~~~~~~~~~~~~~~~ 190 (202)
T PRK06163 130 DVVAIARGAGLENSHWAA--DEAHFEALVDQALS---GPGPSFIAVRIDDK-----PGVGTTERDPAQIRE 190 (202)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecCC-----CCCCCCCCCHHHHHH
Confidence 88874 58997 67885 78899999999885 39999999998643 233445688887764
|
|
| >PRK05261 putative phosphoketolase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-15 Score=157.85 Aligned_cols=199 Identities=19% Similarity=0.175 Sum_probs=142.4
Q ss_pred ccccccCCChhHHHHHHHHhcCCCC--CEEEcCCcchHHHHh------cC--------CCHHHH-HHHHhCCCCCCCCCC
Q 018967 90 VRGFCHLYDGQEAVAIGMEAGITKK--DSIITAYRDHCTFLG------RG--------GTLLEV-FSELMGRKDGCSHGK 152 (348)
Q Consensus 90 ~~gf~h~~~GqEa~~vg~~~~l~~~--D~i~~~yR~~~~~l~------~G--------~~~~~~-~ael~g~~~g~~~G~ 152 (348)
..|.+-.+.|+--+-+.+-..+++. |.++-.--||+.... -| ++..+. |..+|-+- ++ .|
T Consensus 48 ~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqf-s~-pg- 124 (785)
T PRK05261 48 LLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQF-SF-PG- 124 (785)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhc-cC-CC-
Confidence 4577777888988877776666664 544443345664332 35 333221 22222211 11 11
Q ss_pred CCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhH---HHHHHHHHHCCCC-eEEEEe
Q 018967 153 GGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQL---FEALNIAALWDLP-AILVCE 228 (348)
Q Consensus 153 ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~---~Ealn~Aa~~~LP-vI~Vv~ 228 (348)
|.+.|......|+...+|.||+++++|+|+|+. +++.+++|++|||++++|.+ |++.+++.-.++. ++.|++
T Consensus 125 g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld 200 (785)
T PRK05261 125 GIPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILH 200 (785)
T ss_pred CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEE
Confidence 346788765568899999999999999999965 47889999999999999984 7777777777777 568888
Q ss_pred cCCccccccccccc-CCchHHh--hcCCcceEEEcCCCHHHHHHHHHHHHHHhcc---------------CCCE--EEEE
Q 018967 229 NNHYGMGTAEWRAA-KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK---------------NGPM--ILEM 288 (348)
Q Consensus 229 NN~~~i~~~~~~~~-~~~~~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~---------------~gP~--lIe~ 288 (348)
+|+|+|+++..... ...++.+ +|||++.+.|||+|+.++.+++++|++.+-+ .+|. +|.+
T Consensus 201 ~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~ 280 (785)
T PRK05261 201 LNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVL 280 (785)
T ss_pred ecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEE
Confidence 99999999887543 3356665 4699999999999999999887766654322 3788 9999
Q ss_pred EEecCCC
Q 018967 289 DTYRYHG 295 (348)
Q Consensus 289 ~t~R~~G 295 (348)
+|.+++|
T Consensus 281 rT~kG~g 287 (785)
T PRK05261 281 RTPKGWT 287 (785)
T ss_pred ECCccCC
Confidence 9999887
|
|
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-15 Score=132.90 Aligned_cols=126 Identities=23% Similarity=0.221 Sum_probs=93.2
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCC-CeE-EEEecCCccccccccccc-CCc
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAI-LVCENNHYGMGTAEWRAA-KSP 245 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~L-PvI-~Vv~NN~~~i~~~~~~~~-~~~ 245 (348)
.|++|+++|.|+|+|+|.+ +.|||++|||++.++ ..++.+++.+++ |++ +|++||+|++........ ..+
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~ 113 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKT 113 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCC
Confidence 7999999999999999852 789999999999764 245888899995 665 555666788754332222 246
Q ss_pred hHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHH
Q 018967 246 SYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 311 (348)
Q Consensus 246 ~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~ 311 (348)
||.+. ++|+++.+|+| ++.++.+++++++ ++|+|||+.|.+..+ + . +..++++.++
T Consensus 114 d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~-----~gp~lIev~~~~~~~-~--~-~~~~~~~~~~ 171 (179)
T cd03372 114 DLEAVAKACGLDNVATVA-SEEAFEKAVEQAL-----DGPSFIHVKIKPGNT-D--V-PNIPRDPVEI 171 (179)
T ss_pred CHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc-----CCCEEEEEEEcCCCC-C--C-CCCCCCHHHH
Confidence 78774 59999999987 7888888887765 789999999965443 1 1 2345555544
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-15 Score=133.66 Aligned_cols=130 Identities=18% Similarity=0.095 Sum_probs=95.9
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCC-CeEEEEecCC-cccccccccccCCch
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAILVCENNH-YGMGTAEWRAAKSPS 246 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~L-PvI~Vv~NN~-~~i~~~~~~~~~~~~ 246 (348)
+|.+|+++|.|+|+++|. +++.|||++|||++.+. .++|.+++++++ |+++||.||+ |++..........+|
T Consensus 47 ~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d 120 (188)
T cd03371 47 VGSMGHASQIALGIALAR----PDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVS 120 (188)
T ss_pred cCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCC
Confidence 499999999999999985 67889999999999763 356999999997 5776666666 776432222223468
Q ss_pred HHhh--cCCcce-EEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHHH
Q 018967 247 YYKR--GDYVPG-LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 312 (348)
Q Consensus 247 ~~~~--g~gipg-~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~ 312 (348)
|.+. ++|+++ .+|+ ++.++.+++++|++ .++|+|||+.+-+..+ +.. ...++++.+++
T Consensus 121 ~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~---~~~p~lIev~~~~~~~-~~~--~~~~~~~~~~~ 181 (188)
T cd03371 121 LPAIAKACGYRAVYEVP--SLEELVAALAKALA---ADGPAFIEVKVRPGSR-SDL--GRPTTSPIENK 181 (188)
T ss_pred HHHHHHHcCCceEEecC--CHHHHHHHHHHHHh---CCCCEEEEEEecCCCC-CCC--CCCCCCHHHHH
Confidence 8874 589987 4786 79999999998875 3899999999966543 222 22356666554
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-15 Score=136.92 Aligned_cols=116 Identities=21% Similarity=0.164 Sum_probs=90.0
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Cccccccccc-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~~----- 240 (348)
++.|.||+++|.|+|+++|. +++.||++.|||++.++. .+|.+|+++++|+++||.|| +|++......
T Consensus 45 ~~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 118 (205)
T cd02003 45 YGYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSG 118 (205)
T ss_pred CCcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCc
Confidence 35699999999999999885 788999999999998853 35999999999987555555 5776331100
Q ss_pred ------------------ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 241 ------------------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 241 ------------------~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
....+||.+. ++|+++.+|+ +++++.+|+++|++ .++|+|||+.+-+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~lIeV~v~~~ 186 (205)
T cd02003 119 SFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA---SDRTTVIVIKTDPK 186 (205)
T ss_pred cccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEeecc
Confidence 0123678774 5999999995 79999999999875 38999999999653
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=131.79 Aligned_cols=113 Identities=29% Similarity=0.459 Sum_probs=90.2
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
...+.+|+++|.|+|+++| .+++.||+++|||++.+. .. +|.+|+++++|+++||.||+ |++.....
T Consensus 25 ~~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~-~~-el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~ 98 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS-LQ-ELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGG 98 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH-GG-GHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTST
T ss_pred CCccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec-cc-hhHHHhhccceEEEEEEeCCcceEeccccccCcCc
Confidence 3579999999999999998 478999999999999876 34 49999999999887776666 67643221
Q ss_pred ----cc---cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 240 ----RA---AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 240 ----~~---~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
.. ...+||.+. ++|+++.+|+..|++++.+++++|++ .+||+|||+
T Consensus 99 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~---~~gp~vIeV 153 (153)
T PF02775_consen 99 RFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE---SGGPAVIEV 153 (153)
T ss_dssp CHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH---SSSEEEEEE
T ss_pred ccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh---CCCcEEEEc
Confidence 01 345678774 59999999987777999999999995 499999996
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-15 Score=153.65 Aligned_cols=117 Identities=27% Similarity=0.329 Sum_probs=95.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccccccc---------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTA--------- 237 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~--------- 237 (348)
+.|.+|+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.|| .|++...
T Consensus 405 ~~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~ 478 (535)
T PRK07524 405 GYGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEP 478 (535)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCc
Confidence 4699999999999999985 78899999999999875 455 999999999998877777 5875421
Q ss_pred cccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018967 238 EWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (348)
Q Consensus 238 ~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (348)
.......+||.+. ++|+++++|+ ++.++.++++++++. ++|+|||+.++|+.+
T Consensus 479 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~~~~~~~ 533 (535)
T PRK07524 479 VGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFAR---PGPTLIEVDQACWFA 533 (535)
T ss_pred cccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEECCcccc
Confidence 1112234688874 5999999996 799999999988863 999999999999876
|
|
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=129.56 Aligned_cols=111 Identities=23% Similarity=0.287 Sum_probs=86.6
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCC-CCeEEEEecCC-ccccccccccc-CCc
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD-LPAILVCENNH-YGMGTAEWRAA-KSP 245 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~-LPvI~Vv~NN~-~~i~~~~~~~~-~~~ 245 (348)
.|.+|.++|.|+|+++|. ++.|||+.|||++.++. +++.+|+.++ +|+++||.||+ |++...+.... ..+
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 799999999999999984 67899999999998763 5599999999 59987777776 77644221111 256
Q ss_pred hHHhh--cCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 246 SYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 246 ~~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
||.+. ++|+++.+ |+ ++.++.++++ +++ .++|+|||+.+-+
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~---~~~p~li~v~~~~ 157 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA---MKGPTFIHVKVKP 157 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc---CCCCEEEEEEeCC
Confidence 88874 59999988 74 6889988886 553 3899999999854
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.5e-15 Score=131.36 Aligned_cols=116 Identities=21% Similarity=0.189 Sum_probs=89.7
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeE-EEEecCCccccccccc-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAI-LVCENNHYGMGTAEWR----- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI-~Vv~NN~~~i~~~~~~----- 240 (348)
+..|.+|.++|.|+|+++|. +++.||+++|||++.+. +.| |.+|+++++|++ +|++||+|++......
T Consensus 47 ~~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~ 120 (183)
T cd02005 47 PLWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASY 120 (183)
T ss_pred cchhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhcc-HHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCc
Confidence 35699999999999999885 67899999999999774 567 889999999976 5555556886442111
Q ss_pred -ccCCchHHhh--cCC----cceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 -AAKSPSYYKR--GDY----VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 -~~~~~~~~~~--g~g----ipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. ++| +++.+|+ ++.++.++++++++ +.++|+|||+.+.+
T Consensus 121 ~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~--~~~~p~liev~~~~ 175 (183)
T cd02005 121 NDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF--NRDKLSLIEVILPK 175 (183)
T ss_pred ccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh--cCCCcEEEEEEcCc
Confidence 1123677774 477 7888885 79999999999987 23899999999864
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. |
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.9e-15 Score=129.39 Aligned_cols=111 Identities=20% Similarity=0.158 Sum_probs=87.1
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHC-CCCeEEEEecCC-cccccccccccCCch
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-DLPAILVCENNH-YGMGTAEWRAAKSPS 246 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~-~LPvI~Vv~NN~-~~i~~~~~~~~~~~~ 246 (348)
.|.+|.++|.|+|+++|. + +.|||+.|||++.+. . .++.+++++ ++|+++||.||+ |++..........+|
T Consensus 41 ~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG~f~m~-~-~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL----S-RKVIVVDGDGSLLMN-P-GVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcC----C-CcEEEEECchHHHhc-c-cHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 799999999999999985 2 789999999999764 2 348889888 599887775555 776432222222468
Q ss_pred HHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 247 YYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 247 ~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
|.+. ++|+++++|+ ++.++.+++++|++ .++|+|||+.+.
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~vi~v~i~ 155 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLA---TTGPTLLHAPIA 155 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHh---CCCCEEEEEEec
Confidence 8874 5999999985 79999999999986 389999999874
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=150.29 Aligned_cols=116 Identities=21% Similarity=0.163 Sum_probs=93.1
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-c----c-
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-W----R- 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-~----~- 240 (348)
..|+||+++|.|+|+++|. +++.|||++|||++++. . .+|.+|++++||+++||.||+ |++.... . .
T Consensus 429 ~~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~-~-~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~ 502 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMT-G-MDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKY 502 (565)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-H-HHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcc
Confidence 4689999999999999985 78999999999999885 2 459999999999987777776 7754321 0 0
Q ss_pred --ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 241 --AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 241 --~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
....+||.+. +||+++.+|+ ++.++.+++++|+++.+.++|+|||+.+.
T Consensus 503 ~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~~~~p~lIev~v~ 555 (565)
T PRK06154 503 RATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVKEGTPALLEVITS 555 (565)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhccCCCeEEEEEEeC
Confidence 1113588875 5999999997 79999999999997554588999999884
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-14 Score=149.26 Aligned_cols=114 Identities=25% Similarity=0.348 Sum_probs=91.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------- 239 (348)
+.|.||+++|.|+|+++|. +++.||+++|||++++. +.| |.+|++++||+++||.||+ |++.....
T Consensus 420 ~~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~ 493 (570)
T PRK06725 420 GLGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN-IQE-LQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENR 493 (570)
T ss_pred CcccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCc
Confidence 4599999999999999884 78899999999999765 455 9999999999998888887 66533110
Q ss_pred ---cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ---~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+++.+|+ ++.++.++++.|++ .++|+|||+.+-+
T Consensus 494 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~---~~~p~liev~id~ 546 (570)
T PRK06725 494 LSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA---HEGPVVVDFCVEE 546 (570)
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 11124688874 5999999995 78899999988876 3899999999854
|
|
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-14 Score=127.88 Aligned_cols=111 Identities=22% Similarity=0.208 Sum_probs=86.6
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------- 239 (348)
+.|.+|+++|.|+|+++|. ++.||+++|||++.+. . .+|.+|+++++|+++||.||+ |++.....
T Consensus 49 g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~-~-~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~ 121 (175)
T cd02009 49 GASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD-L-NGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDE 121 (175)
T ss_pred CccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh-H-HHHHhccccCCCeEEEEEECCCCchheeccCCcccch
Confidence 3488999999999999984 6779999999999875 3 459999999999876666665 77532111
Q ss_pred --ccc---CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 240 --RAA---KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 240 --~~~---~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
... ..+||.+. ++|+++++|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 122 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIev~v 174 (175)
T cd02009 122 FERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA---QDGPHVIEVKT 174 (175)
T ss_pred hhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh---CCCCEEEEEeC
Confidence 011 24678774 5999999996 79999999998875 38999999975
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-14 Score=148.78 Aligned_cols=117 Identities=22% Similarity=0.195 Sum_probs=95.1
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Cccccccc--------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE-------- 238 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~-------- 238 (348)
+.|.||+++|.|+|+++|. +++.|||++|||+++++...+++++|+++++|+++||.|| +|++....
T Consensus 428 ~~gsmG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~ 503 (569)
T PRK08327 428 SAGGLGWALGAALGAKLAT----PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEG 503 (569)
T ss_pred CCCCCCcchHHHHHHhhcC----CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCccc
Confidence 4699999999999998874 7899999999999998754557999999999998888777 58764210
Q ss_pred ---------cccc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018967 239 ---------WRAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (348)
Q Consensus 239 ---------~~~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (348)
.... ..+||.+. ++|+++.+|+ ++.++.+++++|++..++ +||+|||+.+
T Consensus 504 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 504 YAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred ccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0011 34678774 5999999997 899999999999987666 7899999986
|
|
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-14 Score=127.14 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=85.9
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCcc-ccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc-c----
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-A---- 241 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa-~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~-~---- 241 (348)
.+.+|+++|.|+|+++|. +++.||++.|||+ ++++ ..+|.+|+++++|+++||.||+ |++...... .
T Consensus 50 ~g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 488999999999999885 8899999999999 4554 3459999999999987777776 776442111 0
Q ss_pred -----------cCCchHHhh--cCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 242 -----------AKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 242 -----------~~~~~~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
...+||.+. ++|++++ ++.-.++.++.+++++|++ .++|+|||+.+
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~---~~gp~vIev~~ 183 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ---HKGFSFVEVLS 183 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh---cCCCEEEEEEC
Confidence 012577764 5888885 2233579999999999986 39999999975
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=150.04 Aligned_cols=117 Identities=26% Similarity=0.237 Sum_probs=92.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~------ 240 (348)
+.|+||+++|.|+|+++|. +++.||+++|||++++. . .+|.+|++++||+++||.||+ |++......
T Consensus 416 ~~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~-~-~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~ 489 (588)
T TIGR01504 416 QAGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM-I-EELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDY 489 (588)
T ss_pred ccccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc-H-HHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcccc
Confidence 4599999999999999885 78899999999999886 3 459999999999886666665 876431100
Q ss_pred ----cc----------CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018967 241 ----AA----------KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~----------~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (348)
.. ..+||.+. ++|+++.+|+ ++.++.+++++|++.+++ ++|+|||+.+-+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 490 CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred cceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13688874 5999999995 799999999999875433 899999999853
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-14 Score=147.68 Aligned_cols=115 Identities=26% Similarity=0.322 Sum_probs=92.8
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc--------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-------- 238 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-------- 238 (348)
..|++|+++|.|+|+++|. +++.|||++|||+++++ ..| |.+|+++++|+++||.||+ |++....
T Consensus 406 ~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~-~~e-l~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~ 479 (578)
T PRK06546 406 RHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML-LGE-LLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPD 479 (578)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh-HHH-HHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCc
Confidence 4689999999999999985 78899999999999975 344 8999999999988887777 6764210
Q ss_pred -ccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 239 -WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 239 -~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
......+||.+. ++|+++.+|+ ++.++.+++++|++ .+||+|||+.+-+.
T Consensus 480 ~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~lIev~~~~~ 532 (578)
T PRK06546 480 FGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA---HPGPALVDVVTDPN 532 (578)
T ss_pred ccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCCC
Confidence 011235688875 5999999997 79999999999886 38999999998543
|
|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-14 Score=146.03 Aligned_cols=113 Identities=28% Similarity=0.328 Sum_probs=90.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------- 238 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------- 238 (348)
+..|.+|+++|.|+|+++|. +++.|||++|||+++++. ++|++|++++||+++||.||+ |++....
T Consensus 404 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~--~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~ 477 (530)
T PRK07092 404 MASGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYSI--QALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVR 477 (530)
T ss_pred cCCCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhhH--HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCC
Confidence 44689999999999999985 678999999999999873 679999999999988888887 8764321
Q ss_pred ---ccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 239 ---WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 239 ---~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
.......||.+. ++|+++++|+ ++.++.+++++|.+ .++|+|||+.+
T Consensus 478 ~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~---~~~p~liev~~ 529 (530)
T PRK07092 478 DVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALA---ADGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEc
Confidence 111234678774 5999999997 57788888887774 38999999976
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-14 Score=147.36 Aligned_cols=116 Identities=24% Similarity=0.345 Sum_probs=94.7
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccccccC--
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAK-- 243 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~~~~-- 243 (348)
++.|+||.++|.|+|++++. +++.|||+.|||++++. .+.|.+|+++++|+++||.||+ |++.........
T Consensus 405 ~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~ 478 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGG 478 (550)
T ss_pred CCCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCC
Confidence 46799999999999999886 78999999999999875 4559999999999998888887 787654321110
Q ss_pred -------Cch-HHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 244 -------SPS-YYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 244 -------~~~-~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
.+. |.+. +||+++++|+ ++.++.+++++|++ +++|+|||+.+-+-
T Consensus 479 ~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~---~~~p~lidv~id~~ 533 (550)
T COG0028 479 RYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA---SDGPVLIDVVVDPE 533 (550)
T ss_pred CcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecCc
Confidence 112 6664 5999999998 89999999999997 49999999999765
|
|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-14 Score=145.56 Aligned_cols=118 Identities=24% Similarity=0.332 Sum_probs=93.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccccccccc------c
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------R 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~------~ 240 (348)
..|++|+++|.|+|++++. +++.|||++|||+++++ .++|.+|++++||+++||.|| +|++..... +
T Consensus 400 ~~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~ 473 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGR 473 (542)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCC
Confidence 3599999999999998874 78899999999999987 366999999999988777777 487643211 1
Q ss_pred ----ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 018967 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (348)
Q Consensus 241 ----~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GH 296 (348)
....+||.+. ++|+++.+|+ ++.++.++++++.+ .++|+|||+.|+|...+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 474 VVASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA---HGGPVLIEVPVPRGSEA 530 (542)
T ss_pred cccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh---CCCcEEEEEEecCCCCc
Confidence 1123678874 5999999997 57899999988875 38999999999887543
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-14 Score=146.25 Aligned_cols=113 Identities=25% Similarity=0.271 Sum_probs=89.7
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-c-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-W----- 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-~----- 239 (348)
+..|+||+++|.|+|+++|. +++.|||++|||++++. . .+|.+|++++||+++||.||+ |++.... .
T Consensus 386 ~~~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~-~-qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~ 459 (518)
T PRK12474 386 LTGGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYT-M-QALWTMARENLDVTVVIFANRSYAILNGELQRVGAQ 459 (518)
T ss_pred cCCCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcch-H-HHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCC
Confidence 34599999999999999985 78899999999999985 3 459999999999887777776 8764311 0
Q ss_pred ---c--------ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 240 ---R--------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 240 ---~--------~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
+ ..+..||.+. +||+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 460 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~---~~~p~liev~~ 518 (518)
T PRK12474 460 GAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA---QRGPRLIEAMI 518 (518)
T ss_pred CCCccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc---CCCCEEEEEEC
Confidence 0 0112478874 5999999996 68899999999875 38999999964
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-14 Score=149.71 Aligned_cols=119 Identities=20% Similarity=0.180 Sum_probs=93.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Cccccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~~------ 240 (348)
+.|.+|+++|.|+|+++|. +++.||+++|||+++++ ..| |.+|+++++|+++||.|| +|++......
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 4699999999999999885 68899999999999986 455 889999999988777666 5875431100
Q ss_pred ----cc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018967 241 ----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (348)
Q Consensus 241 ----~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (348)
.. ..+||.+. ++|+++++|+ ++.++.++++++++..++++|+|||+.+-+-.
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQNEGKTTVIEIMCNQEL 565 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCCCCCcEEEEEEecccc
Confidence 11 23588874 5999999996 78899999999987543369999999996544
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-14 Score=147.52 Aligned_cols=117 Identities=20% Similarity=0.308 Sum_probs=94.0
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------c-
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~- 239 (348)
+.|.+|+++|.|+|+++|. +++.||+++|||++.+. ..+|.+|++++||+++||.||+ |++.... .
T Consensus 419 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~ 492 (574)
T PRK07979 419 GLGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGR 492 (574)
T ss_pred CccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCc
Confidence 4599999999999999985 78899999999999875 3459999999999887777776 7753311 0
Q ss_pred --c-c-cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 --R-A-AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 --~-~-~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
. . ...+||.+. ++|+++.+|+ ++.++.+++++|++.++.++|+|||+.+-+
T Consensus 493 ~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~~~~p~lIeV~i~~ 549 (574)
T PRK07979 493 HSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVRNNRLVFVDVTVDG 549 (574)
T ss_pred cccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccCCCCcEEEEEEECC
Confidence 0 1 123688874 5999999995 799999999999986545899999999864
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-14 Score=147.73 Aligned_cols=114 Identities=18% Similarity=0.328 Sum_probs=91.9
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc--------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-------- 238 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-------- 238 (348)
+.|.||+++|.|+|+++|. +++.||+++|||++++. .. +|.+|++++||+++||.||+ |++....
T Consensus 428 ~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~-~~-EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~ 501 (595)
T PRK09107 428 GLGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMC-IQ-EMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNR 501 (595)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhcc-HH-HHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCc
Confidence 3599999999999999985 78899999999999885 34 49999999999988887777 7753311
Q ss_pred -ccc--cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 239 -WRA--AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 239 -~~~--~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
... ...+||.+. ++|+++.+|+ ++.++.+++++|.+ .++|+|||+.+.+
T Consensus 502 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~i~~ 555 (595)
T PRK09107 502 LSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID---VDKPVIFDCRVAN 555 (595)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 011 123688874 5999999995 78899999999886 3899999999965
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-14 Score=143.90 Aligned_cols=113 Identities=27% Similarity=0.287 Sum_probs=88.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
+..|.||+++|.|+|+++|. +++.|||++|||++++. ..+|.+|++++||+++||.||+ |++.....
T Consensus 382 ~~~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~ 455 (514)
T PRK07586 382 LTGGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT--IQALWTQARENLDVTTVIFANRAYAILRGELARVGAG 455 (514)
T ss_pred cCCcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCC
Confidence 33589999999999999985 78899999999999985 3559999999999876666665 87643100
Q ss_pred ------c---cc--CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 240 ------R---AA--KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 240 ------~---~~--~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
. .. ..+||.+. +||+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 456 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~---~~~p~liev~~ 514 (514)
T PRK07586 456 NPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALA---EPGPHLIEAVV 514 (514)
T ss_pred CCCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc---CCCCEEEEEEC
Confidence 0 01 23588874 5999999996 68899999998875 38999999963
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-14 Score=144.30 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=91.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-cc-----
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-WR----- 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-~~----- 240 (348)
..|.+|+++|.|+|+++|. +++.||+++|||++++. +.| |.+|++++||+++||.||+ |++.... ..
T Consensus 405 ~~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~ 478 (542)
T PRK05858 405 PFGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS-LMD-VDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYD 478 (542)
T ss_pred CccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc-HHH-HHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCc
Confidence 4689999999999999885 78899999999999875 444 9999999999887776665 7764321 11
Q ss_pred ----ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. +||+++.+|+ +++++.+++++|++ .++|+|||+.|-+
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIev~~~~ 531 (542)
T PRK05858 479 VAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA---SGVPYLVNVLTDP 531 (542)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCcEEEEEEECC
Confidence 1134688874 5999999996 78899999999886 4899999999853
|
|
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=128.77 Aligned_cols=123 Identities=17% Similarity=0.162 Sum_probs=91.5
Q ss_pred cCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc----
Q 018967 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW---- 239 (348)
Q Consensus 166 ~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~---- 239 (348)
+...+++|.++|.|+|++++ .+++.|||+.|||++ .++ .++|.+|+++++|+++||.||+ |++...+.
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~ 131 (235)
T cd03376 58 FENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTGIQRSGST 131 (235)
T ss_pred hcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCC
Confidence 34557999999999998655 478899999999995 665 3559999999999998888887 68521110
Q ss_pred ----c-------------ccCCchHHhh--cCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018967 240 ----R-------------AAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (348)
Q Consensus 240 ----~-------------~~~~~~~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (348)
+ ....+||.+. ++|++++. ++-.++.++.+++++|++. ++|+|||+.+.=...|.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~---~gP~lIev~~~C~~~~~ 206 (235)
T cd03376 132 PYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALSI---EGPAYIHILSPCPTGWR 206 (235)
T ss_pred CCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhC---CCCEEEEEECCCCCCCC
Confidence 0 1123577774 58998863 4556899999999999863 89999999875444343
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=142.96 Aligned_cols=117 Identities=23% Similarity=0.279 Sum_probs=91.7
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc---
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW--- 239 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~--- 239 (348)
.+.++.|.||+++|.|+|+++|. +++.||+++|||++++. . .+|.+|++++||+++||.||+ |++.....
T Consensus 399 ~~~~~~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~ 472 (544)
T PRK07064 399 NVHALGGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLN-L-GELATAVQENANMVIVLMNDGGYGVIRNIQDAQ 472 (544)
T ss_pred eeccCCCccccccchhhhhhhhC----cCCcEEEEEcchHhhhh-H-HHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHh
Confidence 34444589999999999999985 78899999999999875 3 459999999999876666665 87643111
Q ss_pred -------cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 240 -------RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 240 -------~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
.....+||.+. ++|+++.+|+ +++++.+++++|++ .++|+|||+.++
T Consensus 473 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIeV~~~ 528 (544)
T PRK07064 473 YGGRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA---KEGPVLVEVDML 528 (544)
T ss_pred cCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc---CCCCEEEEEEcc
Confidence 11134688874 5999999996 68899999998875 389999999986
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=144.47 Aligned_cols=117 Identities=23% Similarity=0.231 Sum_probs=92.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~------ 240 (348)
+.|.||+++|.|+|+++|. +++.|||++|||++++. . .+|.+|++++||+++||.||+ |++......
T Consensus 428 ~~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~-~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~ 501 (579)
T TIGR03457 428 SFGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMS-M-NEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNR 501 (579)
T ss_pred ccccccchHHHHHhhhhhC----CCCcEEEEEcchHHhcc-H-HHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCc
Confidence 3589999999999999985 78899999999999985 3 449999999999886666665 876431110
Q ss_pred ----ccCC-chHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ----AAKS-PSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~~~-~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.... +||.+. ++|+++.+|+ +++++.+++++|++..+.++|+|||+.+-+
T Consensus 502 ~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~~~~~p~lieV~v~~ 558 (579)
T TIGR03457 502 FVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQAEGKTTVIEIVCTR 558 (579)
T ss_pred ceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhCCCCCcEEEEEEeCC
Confidence 1122 488875 5999999996 799999999999875434889999999965
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-14 Score=145.77 Aligned_cols=118 Identities=26% Similarity=0.240 Sum_probs=93.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-----c
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW-----R 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~-----~ 240 (348)
++.|++|+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.||+ |++..... .
T Consensus 416 ~~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~ 489 (591)
T PRK11269 416 GQAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL-IEE-LAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMD 489 (591)
T ss_pred CccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC-HHH-HHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccC
Confidence 34699999999999999885 68899999999999885 344 9999999999988887777 77533110 0
Q ss_pred -----cc----------CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018967 241 -----AA----------KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (348)
Q Consensus 241 -----~~----------~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (348)
.. ..+||.+. ++|+++.+|+ +++++.+|+++|++...+ +||+|||+.+-+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 490 YCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred ccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13688874 5999999995 799999999999865443 899999999854
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=143.09 Aligned_cols=114 Identities=22% Similarity=0.311 Sum_probs=90.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-----cc-
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-----WR- 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-----~~- 240 (348)
+.|.||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|++++||+++||.||+ |++.... .+
T Consensus 406 ~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~ 479 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS-SME-LETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRS 479 (539)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 4689999999999999985 68899999999999985 344 9999999999876666655 7764311 11
Q ss_pred ---ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ---~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~---~~~p~lIev~v~~ 531 (539)
T TIGR02418 480 SGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME---VEGPVVVDIPVDY 531 (539)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 1134688874 5999999996 68899999999875 3899999999854
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=143.59 Aligned_cols=114 Identities=23% Similarity=0.274 Sum_probs=90.2
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~------ 240 (348)
+.|.||+++|.|+|+++|. +++.|||++|||++++. .++|++|+++++|+++||.||+ |++....+.
T Consensus 435 g~gsmG~~l~~aiGa~la~----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~ 508 (578)
T PRK06112 435 GLAGLGWGVPMAIGAKVAR----PGAPVICLVGDGGFAHV--WAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTH 508 (578)
T ss_pred CccccccHHHHHHHHHhhC----CCCcEEEEEcchHHHhH--HHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCc
Confidence 3589999999999998874 78899999999999864 5669999999999998888887 565331111
Q ss_pred ----ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....||.+. ++|+++++|+ +++++.+++++|.+ .+||+|||+++-+
T Consensus 509 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~lIev~~~~ 561 (578)
T PRK06112 509 TDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMA---APGPTLIEVITDP 561 (578)
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEcCc
Confidence 1124577774 5999999996 68899999988875 3899999999854
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=143.02 Aligned_cols=115 Identities=23% Similarity=0.304 Sum_probs=91.2
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
++.|.||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|++++||+++||.||+ |++.....
T Consensus 405 ~~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~ 478 (574)
T PRK09124 405 FNHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML-MGD-FLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYL 478 (574)
T ss_pred CCcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc-HHH-HHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCc
Confidence 45699999999999999885 78899999999999875 344 9999999999876666665 77642100
Q ss_pred ---cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ---~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. +||+++.+|+ ++.++.+++++|++ .++|+|||+.+-+
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIev~i~~ 531 (574)
T PRK09124 479 TDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA---HDGPALVDVVTAK 531 (574)
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 01134688874 5999999996 79999999999875 3899999999854
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=144.77 Aligned_cols=116 Identities=22% Similarity=0.377 Sum_probs=91.9
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------c
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~ 239 (348)
++.|++|+++|.|+|+++|. +++.||+++|||++++. . .+|.+|++++||+++||.||+ |++.... .
T Consensus 434 ~~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~-~-~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~ 507 (587)
T PRK06965 434 GGLGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMC-I-QELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSK 507 (587)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcC-H-HHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 34589999999999999985 78899999999999885 3 459999999999987777776 6653311 0
Q ss_pred c----cc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 R----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ~----~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
+ .. ..+||.+. ++|+++.+|+ ++.++.+++++|+++ .++|+|||+.+-+
T Consensus 508 ~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lieV~i~~ 563 (587)
T PRK06965 508 RYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL--KDRTVFLDFQTDP 563 (587)
T ss_pred CccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEecc
Confidence 1 11 24688874 5999999996 788999999999872 3789999999853
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-13 Score=145.57 Aligned_cols=114 Identities=23% Similarity=0.310 Sum_probs=91.6
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~------ 240 (348)
+.|.+|+++|.|+|+++|. +++.||+++|||++++. ..| |.+|++++||+++||.||+ |++......
T Consensus 432 ~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~ 505 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN-IQE-LGTLAQYGINVKTVIINNGWQGMVRQWQESFYGER 505 (616)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 4699999999999999885 78899999999999875 344 9999999999987777776 676432110
Q ss_pred ----cc--CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ----AA--KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~--~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.. ..+||.+. ++|+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 506 ~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~---~~~p~lIeV~i~~ 560 (616)
T PRK07418 506 YSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA---HDGPVLIDVHVRR 560 (616)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 01 24688875 5999999996 78999999998886 3889999999864
|
|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=143.01 Aligned_cols=116 Identities=20% Similarity=0.280 Sum_probs=90.6
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-----c--
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-----W-- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-----~-- 239 (348)
..|.||+++|.|+|+++|. +++.||+++|||++++. . .+|.++++++||+++||.||+ |++.... .
T Consensus 406 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m~-~-~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~ 479 (575)
T TIGR02720 406 LFATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSMT-M-QDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPL 479 (575)
T ss_pred CcchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHhh-H-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCc
Confidence 3699999999999998875 78899999999999985 3 449999999999876655555 8864211 0
Q ss_pred --cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 --RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 --~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+++.+|+ ++.++.++++++++ ...++|+|||+.+.-
T Consensus 480 ~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~~~~~p~liev~i~~ 533 (575)
T TIGR02720 480 IGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-IKQGKPVLIDAKITG 533 (575)
T ss_pred ccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-hCCCCcEEEEEEeCC
Confidence 11234678874 5999999996 68899999999885 224899999999854
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=143.87 Aligned_cols=114 Identities=24% Similarity=0.411 Sum_probs=90.8
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------c
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~ 239 (348)
++.|.+|+++|.|+|+++|. +++.||++.|||++++. . .+|.+|++++||+++||.||+ |++.... .
T Consensus 427 ~~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~-~-~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~ 500 (585)
T CHL00099 427 AGLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMN-L-QELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGE 500 (585)
T ss_pred ccccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhh-H-HHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 34699999999999999985 68899999999999875 3 459999999999988888887 6653211 0
Q ss_pred c------ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 240 R------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 240 ~------~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
+ ....+||.+. ++|+++++|+ +++++.+++++|++ .+||+|||+.+-
T Consensus 501 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~liev~v~ 555 (585)
T CHL00099 501 RYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD---YDGPVLIDCQVI 555 (585)
T ss_pred CcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEEC
Confidence 0 1124678874 5999999996 68899999988876 389999999995
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=142.37 Aligned_cols=116 Identities=21% Similarity=0.317 Sum_probs=91.5
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------c
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~ 239 (348)
++.|++|+++|.|+|+++|. +++.||+++|||++++. . ..|.+|++++||+++||.||+ |++.... .
T Consensus 420 ~~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~-~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~ 493 (574)
T PRK06466 420 GGLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMN-I-QELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEG 493 (574)
T ss_pred CCcchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCC
Confidence 34589999999999999985 78899999999999885 3 449999999999887766665 8753311 0
Q ss_pred ---cc--cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ---RA--AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ---~~--~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.. ...+||.+. ++|+++.+|+ ++.++.+++++|.+. .++|+|||+.+-+
T Consensus 494 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~--~~~p~lIev~i~~ 549 (574)
T PRK06466 494 RHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM--KDRLVFIDIYVDR 549 (574)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEeCC
Confidence 01 123688774 5999999996 789999999998862 2899999999864
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=142.74 Aligned_cols=114 Identities=21% Similarity=0.297 Sum_probs=91.8
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------c
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------R 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------~ 240 (348)
+.|.+|+++|.|+|+++|. +++.||+++|||++++. +.| |.+|+++++|+++||.||+ |++..... +
T Consensus 417 ~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~ 490 (564)
T PRK08155 417 GLGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQR 490 (564)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCC
Confidence 4589999999999999985 67899999999999985 566 9999999999988887777 88644211 0
Q ss_pred ----cc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.. ...||.+. ++|+++++|+ +++++.+++++|++ .++|+|||+.+-+
T Consensus 491 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~~~~ 544 (564)
T PRK08155 491 VFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN---RPGPALIHVRIDA 544 (564)
T ss_pred eeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 11 23678874 5999999997 68889999988875 3899999999854
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=142.61 Aligned_cols=114 Identities=24% Similarity=0.392 Sum_probs=90.8
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------c-
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~- 239 (348)
+.|++|+++|.|+|+++|. +++.||+++|||++.+. .. +|.+|++++||+++||.||+ |++.... .
T Consensus 410 ~~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~-~~-eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~ 483 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMN-LQ-ELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEER 483 (558)
T ss_pred ccccccchhhHHHhhhhhC----CCCcEEEEEcchHHhcc-HH-HHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCc
Confidence 4589999999999998884 67899999999999884 44 49999999999998888887 5643210 0
Q ss_pred ----cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ----~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+++++|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 484 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~---~~p~liev~~~~ 537 (558)
T TIGR00118 484 YSHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALSS---NEPVLLDVVVDK 537 (558)
T ss_pred eeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 11124688875 5999999997 478999999988863 899999999964
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=143.34 Aligned_cols=115 Identities=21% Similarity=0.367 Sum_probs=91.1
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------- 239 (348)
+.|.||+++|.|+|+++|. +++.|||++|||++.+. . .+|.+|++++||+++||.||+ |++.....
T Consensus 419 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~-~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~ 492 (572)
T PRK08979 419 GLGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMN-I-QELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGR 492 (572)
T ss_pred CcccccchhhHHHhhhhhC----CCCeEEEEEcchHhhcc-H-HHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCc
Confidence 4589999999999999985 78899999999999885 3 449999999999887776666 77543111
Q ss_pred --cc-c-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 --RA-A-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 --~~-~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.. . ..+||.+. ++|+++.+|+ ++.++.+++++|++. .++|+|||+.+-+
T Consensus 493 ~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lIev~i~~ 547 (572)
T PRK08979 493 HSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM--KDRLVFVDINVDE 547 (572)
T ss_pred ccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEeCC
Confidence 01 1 23688874 5999999996 789999999998862 2899999999864
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=141.57 Aligned_cols=115 Identities=25% Similarity=0.342 Sum_probs=91.2
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------c
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------R 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------~ 240 (348)
+.|.+|+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+|+||.||+ |++..... .
T Consensus 412 ~~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~ 485 (563)
T PRK08527 412 GLGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEER 485 (563)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCc
Confidence 3599999999999999985 67889999999999985 456 9999999999987777776 67533110 0
Q ss_pred ----cc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 241 ----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 241 ----~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
.. ..+||.+. ++|+++++|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lieV~v~~~ 540 (563)
T PRK08527 486 YSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE---SDKVALIDVKIDRF 540 (563)
T ss_pred eeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEECCc
Confidence 11 23578774 5999999996 68899999988875 38999999999763
|
|
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=126.50 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=95.5
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc------
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~------ 240 (348)
.|.+|.++|+|+|+++|. ++..||++.|||++ .+| ...|.+|+++++|+++||.||+ |++...+..
T Consensus 69 ~g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g 142 (301)
T PRK05778 69 HTLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEG 142 (301)
T ss_pred chhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCC
Confidence 488999999999999885 78899999999997 565 2348899999999988887777 776442110
Q ss_pred ----------ccCCchHHhh--cCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE--ecCCCCCCCCCCCCC
Q 018967 241 ----------AAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT--YRYHGHSMSDPGSTY 305 (348)
Q Consensus 241 ----------~~~~~~~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t--~R~~GHs~~D~~~~Y 305 (348)
.....||.+. ++|++++ ++.-.++.++.+++++|+++ +||+|||+.+ .-+++.. +.+
T Consensus 143 ~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~~---~GpalIeV~~~C~~~~~~~-----~~~ 214 (301)
T PRK05778 143 SKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAISH---KGFAFIDVLSPCVTFNGRN-----TST 214 (301)
T ss_pred cccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCCcC-----Ccc
Confidence 0022467664 4888876 33345899999999999863 9999999864 3333322 234
Q ss_pred CCHHHHHHHH
Q 018967 306 RTRDEISGVR 315 (348)
Q Consensus 306 R~~~e~~~~~ 315 (348)
+++.++.+|-
T Consensus 215 ~~~~~~~~~~ 224 (301)
T PRK05778 215 KSPAYMREYY 224 (301)
T ss_pred cCHHHHHHHH
Confidence 5666666663
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=141.97 Aligned_cols=117 Identities=26% Similarity=0.307 Sum_probs=91.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHC-----CCCeEEEEecCC-ccccccc--
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-----DLPAILVCENNH-YGMGTAE-- 238 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~-----~LPvI~Vv~NN~-~~i~~~~-- 238 (348)
++.|.||+++|.|+|+++|. +++.|||++|||++++....| |.+|+++ +||+++||.||+ |++....
T Consensus 412 ~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~~E-L~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~ 486 (597)
T PRK08273 412 GTLATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGMAE-LITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQR 486 (597)
T ss_pred CccccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccchHH-HHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHH
Confidence 34589999999999999985 788999999999998752344 9999998 899987777776 7653211
Q ss_pred ---c-------cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 239 ---W-------RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 239 ---~-------~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
. ...+..||.+. ++|+++++|+ +++++.+++++|++ .++|+|||+.+-+.
T Consensus 487 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIeV~~~~~ 548 (597)
T PRK08273 487 VMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA---ADRPVVLEVKTDPN 548 (597)
T ss_pred HhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEeCCC
Confidence 0 01134578774 5999999996 78899999999886 39999999999653
|
|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-13 Score=141.69 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=88.2
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------c
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------R 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------~ 240 (348)
..|.||+++|.|+|+++|. +++.|||++|||++++. ..+|.+|+++++|+++||.||+ |++..... .
T Consensus 402 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~ 475 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 475 (539)
T ss_pred hhhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhH--HHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcC
Confidence 4599999999999999885 78899999999999875 3559999999999876666555 87643111 1
Q ss_pred ccCCchHHhh--cCCcc----eEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 241 AAKSPSYYKR--GDYVP----GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 241 ~~~~~~~~~~--g~gip----g~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
....+||.+. ++|++ +.+|+ ++.++.+++++|++ .++|+|||+.+-
T Consensus 476 ~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~p~liev~i~ 527 (539)
T TIGR03393 476 DIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAA---HERLSLIEVVLP 527 (539)
T ss_pred cCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhc---cCCeEEEEEEcC
Confidence 1234688774 58875 78985 68899999998875 389999999873
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. |
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-13 Score=140.19 Aligned_cols=114 Identities=22% Similarity=0.312 Sum_probs=90.0
Q ss_pred CCccccchhHHHHHHHHHHHhCCC-CcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~-~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
+.|.+|+++|.|+|+++|. + ++.|||++|||++.+. ..+|.+|++++||+++||.||+ |++.....
T Consensus 394 ~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~ 467 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYP 467 (549)
T ss_pred CcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCC
Confidence 4699999999999999885 5 7899999999999875 3459999999999876666555 77542110
Q ss_pred ---cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ---~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+++.+|+ ++.++..++++|++ .++|+|||+.+-+
T Consensus 468 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~i~~ 520 (549)
T PRK06457 468 EWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN---TKGPAVLDAIVDP 520 (549)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCc
Confidence 11124688874 5999999996 78999999999875 3899999999854
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-13 Score=140.23 Aligned_cols=115 Identities=22% Similarity=0.252 Sum_probs=91.1
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccc-cccc----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGT-AEWR---- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~-~~~~---- 240 (348)
+..|.+|+++|.|+|++++. +++.|||++|||++++. .++|.+|+++++|+++||.||+ |++.. ....
T Consensus 412 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~ 485 (557)
T PRK08199 412 PTSGSMGYGLPAAIAAKLLF----PERTVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPG 485 (557)
T ss_pred CCCccccchHHHHHHHHHhC----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCC
Confidence 34699999999999998874 78899999999999874 3569999999999998888887 77532 1111
Q ss_pred -----ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 -----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 -----~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. +||+++.+|+ +++++.++++++++ .+||+|||+.+-+
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~li~v~~~~ 539 (557)
T PRK08199 486 RVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALA---SGKPALIEIRIDP 539 (557)
T ss_pred ccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCH
Confidence 1123578774 5999999997 57888888888875 3899999999854
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-13 Score=141.91 Aligned_cols=116 Identities=18% Similarity=0.093 Sum_probs=89.7
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc----cc
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW----RA 241 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~----~~ 241 (348)
+..|+||+++|.|+|+++|. +++.||+++|||++++. . .+|.+|++++||+++||.||+ |++..... ..
T Consensus 425 ~~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~-~-~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~ 498 (578)
T PLN02573 425 MQYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVT-A-QDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNV 498 (578)
T ss_pred cchhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhH-H-HHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccc
Confidence 34699999999999999886 78899999999999875 3 449999999999887776666 78643211 11
Q ss_pred cCCchHHhh--cC----C-cceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 242 AKSPSYYKR--GD----Y-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 242 ~~~~~~~~~--g~----g-ipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
...+||.+. ++ | +++.+|+ ++.++.+++++|++. ..++|+|||+.+-
T Consensus 499 ~~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~-~~~~p~lieV~v~ 552 (578)
T PLN02573 499 IKNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE-KKDCLCFIEVIVH 552 (578)
T ss_pred cCCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh-CCCCcEEEEEEcC
Confidence 134677764 35 3 8899996 688999999998852 1289999999873
|
|
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-13 Score=126.39 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=87.6
Q ss_pred CCccccchhHHHHHHHHHH-HhCCCCcEEEEEeCCcccc-chhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc----
Q 018967 168 GHGIVGAQIPLGCGLAFAQ-KYSKDETVTFALYGDGAAN-QGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR---- 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~-k~~~~~~~vv~~~GDGa~~-~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~---- 240 (348)
..|.+|+++|.|+|+++|. +...+++.|||+.|||++. +| +.| +.++..+++|+++||.||+ |++...+..
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 4599999999999998871 1113788999999999974 55 344 6667789999988887777 675421111
Q ss_pred ------------ccCCchHHhh--cCCcceEE---EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 241 ------------AAKSPSYYKR--GDYVPGLK---VDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 241 ------------~~~~~~~~~~--g~gipg~~---VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
....+||.+. ++|+++++ |+ ++.++.+|+++|++ +.+||+|||+.+.
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~--~~~GP~lI~v~i~ 203 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS--RTDGPTFIHAYTP 203 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh--cCCCCEEEEEeCC
Confidence 1123678874 59999985 65 68999999999986 1399999999863
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-13 Score=141.41 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=91.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-cc----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-WR---- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-~~---- 240 (348)
++.|.+|+++|.|+|+++|. +++.||+++|||++.+. . .+|.+|++++||+++||.||+ |++.... ..
T Consensus 418 ~~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~-~-~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~ 491 (572)
T PRK06456 418 SGMGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMT-G-TNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGK 491 (572)
T ss_pred CCcccccchhHHHHHHHHhC----CCCeEEEEEccchHhcc-h-HHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCC
Confidence 34699999999999999985 68899999999999886 3 449999999999887777776 7764311 10
Q ss_pred -----cc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 -----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 -----~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.. ..+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIev~v~~ 546 (572)
T PRK06456 492 RIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK---EDIPAVIRVPVDK 546 (572)
T ss_pred CcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCc
Confidence 11 23688874 5999999995 78899999998875 3899999999975
|
|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-13 Score=140.75 Aligned_cols=113 Identities=21% Similarity=0.261 Sum_probs=89.8
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc----c----
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE----W---- 239 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~----~---- 239 (348)
.|.+|+++|.|+|+++|. +++.||+++|||++.+. . .+|.+|+++++|+++||.||+ |++.... .
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~-~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~ 480 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV-M-QDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEY 480 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh-H-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcc
Confidence 599999999999999875 78899999999999985 3 459999999999876666665 7763211 0
Q ss_pred -cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 -RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 -~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIeV~vd~ 531 (576)
T PRK08611 481 AIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA---QDKPVIIDVYVDP 531 (576)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 11134688875 5999999995 78899999998875 3899999999965
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-13 Score=140.92 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=90.1
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-----c-
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW-----R- 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~-----~- 240 (348)
+.|.||+++|.|+|+++|. +++.|||++|||++++. . .+|.+|+++++|+++||.||+ |++..... +
T Consensus 412 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~ 485 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFS-A-MELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRS 485 (552)
T ss_pred ccccccccccHHHhhHhhc----CCCcEEEEEechHHhhh-H-HHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCc
Confidence 4689999999999999885 78899999999999875 3 449999999999886666665 77643211 0
Q ss_pred ---ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ---~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. ++|+++.+|. ++.++.+++++|.+ .++|+|||+.+.+
T Consensus 486 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~liev~~~~ 537 (552)
T PRK08617 486 SGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA---TDGPVVIDIPVDY 537 (552)
T ss_pred ccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCcEEEEEEecc
Confidence 1124678774 5999999995 78899999998875 3899999999864
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-13 Score=139.62 Aligned_cols=113 Identities=23% Similarity=0.304 Sum_probs=89.9
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------cc-
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------WR- 240 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~~- 240 (348)
.|++|+++|.|+|+++|. +++.|||++|||++++. . .+|.+|+++++|+++||.||+ |++.... ..
T Consensus 413 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~-~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~ 486 (561)
T PRK06048 413 LGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMN-S-QELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRY 486 (561)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEeCchhhcc-H-HHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcc
Confidence 489999999999999985 78899999999999886 3 449999999999887776665 7753210 01
Q ss_pred ---c-cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ---A-AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ---~-~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
. ...+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+-+
T Consensus 487 ~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~---~~~p~liev~~~~ 539 (561)
T PRK06048 487 SHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA---SDRPVVIDFIVEC 539 (561)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 1 134688874 5999999996 68899999999885 3899999999854
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-13 Score=140.79 Aligned_cols=114 Identities=23% Similarity=0.361 Sum_probs=90.1
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc--------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-------- 238 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-------- 238 (348)
+.|.+|+++|.|+|+++|. +++.|||++|||++++. . .+|.+|++++||+++||.||+ |++....
T Consensus 424 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~-~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~ 497 (585)
T PLN02470 424 GLGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN-I-QELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKAN 497 (585)
T ss_pred ccccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc-H-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCc
Confidence 4599999999999999985 78899999999999986 3 459999999999887766665 7653210
Q ss_pred --ccccC--------CchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 239 --WRAAK--------SPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 239 --~~~~~--------~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
..... .+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+-+
T Consensus 498 ~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lieV~i~~ 558 (585)
T PLN02470 498 RAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD---TPGPYLLDVIVPH 558 (585)
T ss_pred eeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 00111 1588874 5999999996 78899999999886 3899999999954
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-13 Score=138.97 Aligned_cols=114 Identities=19% Similarity=0.261 Sum_probs=89.8
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------cc
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------WR 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~~ 240 (348)
+.|.+|+++|.|+|+++|. +++.||+++|||++.+. . .+|.+|+++++|+++||.||+ |++.... ..
T Consensus 404 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~ 477 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN-S-QELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFED 477 (547)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc-H-HHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCc
Confidence 4689999999999999885 78899999999999875 3 449999999999876665554 8864311 01
Q ss_pred ---ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ---~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. ++|+++.+|+ +++++.++++++.+ .++|+|||+.+.+
T Consensus 478 ~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIev~v~~ 529 (547)
T PRK08322 478 FGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA---QPGVHVIDCPVDY 529 (547)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 1124688874 5999999995 78999999998875 3899999999854
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-13 Score=139.27 Aligned_cols=116 Identities=23% Similarity=0.384 Sum_probs=92.0
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------- 238 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------- 238 (348)
++.|++|+++|.|+|+++|. +++.||+++|||++++. .++|.+|+++++|+++||.||+ |++....
T Consensus 418 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~ 491 (574)
T PRK06882 418 GGAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSG 491 (574)
T ss_pred CCcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCC
Confidence 34699999999999999985 67889999999999885 3669999999999988887777 6643211
Q ss_pred ---ccc-cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 239 ---WRA-AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 239 ---~~~-~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
... ...+||.+. ++|+++++|+ ++.++.+++++|++. .++|+|||+.+-+
T Consensus 492 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~liev~i~~ 547 (574)
T PRK06882 492 RHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI--KDKLVFVDVNVDE 547 (574)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc--CCCcEEEEEEecC
Confidence 011 123678774 5999999996 688999999988863 2789999999965
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.2e-13 Score=138.53 Aligned_cols=114 Identities=26% Similarity=0.412 Sum_probs=90.2
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------- 239 (348)
+.|++|+++|.|+|+++|. +++.||+++|||++.+. +.| |++|+++++|+++||.||+ |++.....
T Consensus 422 ~~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m~-~~e-L~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~ 495 (571)
T PRK07710 422 GLGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQMT-LQE-LSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQR 495 (571)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCc
Confidence 4589999999999999985 78899999999999984 455 9999999999877766665 77643210
Q ss_pred ----cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ----~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 496 ~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lieV~vd~ 549 (571)
T PRK07710 496 YSHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIE---LQEPVVIDCRVLQ 549 (571)
T ss_pred ceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 01134688875 5999999996 57788888888875 3899999999965
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-13 Score=136.96 Aligned_cols=114 Identities=22% Similarity=0.313 Sum_probs=90.0
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------cc
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------WR 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~~ 240 (348)
+.|++|+++|.|+|+++|. +++.||+++|||++++. .. +|.+|+++++|+++||.||+ |++.... .+
T Consensus 399 ~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~-~~-eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~ 472 (548)
T PRK08978 399 GLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN-VQ-ELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDER 472 (548)
T ss_pred chhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhcc-HH-HHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCc
Confidence 4599999999999999885 78899999999999875 34 49999999999876666665 7754311 01
Q ss_pred ----cc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.. ..+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+-+
T Consensus 473 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~id~ 526 (548)
T PRK08978 473 YSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN---SEGPYLLHVSIDE 526 (548)
T ss_pred ceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 11 23688874 5999999995 78899999998875 3899999999965
|
|
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-12 Score=125.18 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=84.6
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccc-hhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc------
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ-GQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~-G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~------ 240 (348)
.+++|.++|.|+|+++|. +++.||++.|||++.+ | .. .+.+|+++++|+++||.||+ |++...+..
T Consensus 67 ~~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~~g-~~-el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g 140 (277)
T PRK09628 67 HTTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLAIG-GN-HTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKG 140 (277)
T ss_pred eeccccHHHHHHHHHHHC----CCCeEEEEECchHHHHhh-HH-HHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCC
Confidence 358899999999999985 8899999999999853 3 23 36679999999988887777 787431110
Q ss_pred -------c---cCCchHHhh--cCCcceE---EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 241 -------A---AKSPSYYKR--GDYVPGL---KVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 241 -------~---~~~~~~~~~--g~gipg~---~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
. .+..||.+. ++|++++ +| .++.++.+++++|+++ +||+|||+.+.
T Consensus 141 ~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v--~~~~el~~al~~Al~~---~Gp~lIeV~~~ 201 (277)
T PRK09628 141 MWTVTAQYGNIDPTFDACKLATAAGASFVARESV--IDPQKLEKLLVKGFSH---KGFSFFDVFSN 201 (277)
T ss_pred ceeeeccCCCcCCCCCHHHHHHHCCCceEEEEcc--CCHHHHHHHHHHHHhC---CCCEEEEEcCC
Confidence 0 112356664 5898875 56 4799999999999864 99999999764
|
|
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=127.13 Aligned_cols=130 Identities=20% Similarity=0.157 Sum_probs=94.5
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCC-CeEEEEecCC-cccccccccccCCch
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAILVCENNH-YGMGTAEWRAAKSPS 246 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~L-PvI~Vv~NN~-~~i~~~~~~~~~~~~ 246 (348)
.|++|+++|+|+|+|+|. +++.|||+.|||++.+. ..+|.+++.+++ |+++||.||+ |+....+.......|
T Consensus 220 ~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d 293 (361)
T TIGR03297 220 VGSMGHASQIALGLALAR----PDQRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLD 293 (361)
T ss_pred echhhhHHHHHHHHHHHC----CCCCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCCC
Confidence 599999999999999985 67899999999999763 345889999996 7887777777 654322222223467
Q ss_pred HHhh--cCCc-ceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHHH
Q 018967 247 YYKR--GDYV-PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 312 (348)
Q Consensus 247 ~~~~--g~gi-pg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~ 312 (348)
|.+. ++|+ .+++| ++..++.++++++++ .+||+|||+.+-...+-.. +.--.|+.|.+
T Consensus 294 ~~~iA~a~G~~~~~~v--~~~~eL~~al~~a~~---~~gp~lIeV~v~~g~~~~l---~rp~~~p~e~~ 354 (361)
T TIGR03297 294 FAQIAKACGYAKVYEV--STLEELETALTAASS---ANGPRLIEVKVRPGSRADL---GRPTTSPPENK 354 (361)
T ss_pred HHHHHHHCCCceEEEe--CCHHHHHHHHHHHHh---CCCcEEEEEEecCCCccCC---CCCCCCHHHHH
Confidence 7764 5775 35666 589999999999875 3899999999866543332 22235676654
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=134.68 Aligned_cols=113 Identities=20% Similarity=0.163 Sum_probs=88.7
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccc--c------c
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGT--A------E 238 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~--~------~ 238 (348)
..|.||+++|.|+|+++| +++.||++.|||++++. ..| |.+|++++||+++||.||+ |.... . .
T Consensus 415 ~~gsmG~~lpaaiGaala-----~~~~vv~i~GDGsf~m~-~~E-L~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~ 487 (554)
T TIGR03254 415 TWGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGFS-GME-VETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPA 487 (554)
T ss_pred CCCcCCchHHHHHHHHhc-----CCCcEEEEEcCchhccc-HHH-HHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCC
Confidence 459999999999999997 26789999999999985 345 9999999999998888886 42110 0 0
Q ss_pred cccc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 239 WRAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 239 ~~~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.... ..+||.+. ++|+++.+|+ +++++.+++++|++ .++|+|||+.+-+
T Consensus 488 ~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIev~id~ 539 (554)
T TIGR03254 488 PTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA---SGKPTLINAVIDP 539 (554)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEECC
Confidence 0111 34688874 5999999995 78999999998875 3899999999853
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=136.19 Aligned_cols=114 Identities=25% Similarity=0.322 Sum_probs=89.7
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------c
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------R 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------~ 240 (348)
+.|++|+++|.|+|+++|. +++.||+++|||++.+. .. +|.+|+++++|+++||.||+ |++....+ .
T Consensus 417 ~~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~-eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~ 490 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN-SQ-ELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKR 490 (586)
T ss_pred CccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc-HH-HHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCC
Confidence 3589999999999999885 67889999999999876 34 49999999999887776666 77532110 0
Q ss_pred ---c-c-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ---A-A-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ---~-~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
. . ...||.+. ++|+++.+|+ +++++.+++++|++ .++|+|||+.+-+
T Consensus 491 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~i~~ 544 (586)
T PRK06276 491 QSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK---SGEPYLLDIIIDP 544 (586)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecc
Confidence 1 1 23578874 5999999995 78999999998885 3899999999853
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.7e-13 Score=138.20 Aligned_cols=115 Identities=21% Similarity=0.318 Sum_probs=90.6
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------cc
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------WR 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~~ 240 (348)
+.|++|+++|.|+|+++|. +++.|||++|||++.+. ..+|.+|++++||+++||.||+ |++.... ..
T Consensus 445 ~~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~ 518 (612)
T PRK07789 445 GLGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEER 518 (612)
T ss_pred CcccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCC
Confidence 4589999999999999885 78899999999999875 3459999999999876666665 7754311 00
Q ss_pred ----cc-----CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ----AA-----KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~-----~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.. ..+||.+. ++|+++.+|+ ++.++.+++++|++. .++|+|||+.+-+
T Consensus 519 ~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~--~~~p~lIev~i~~ 577 (612)
T PRK07789 519 YSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI--NDRPVVIDFVVGK 577 (612)
T ss_pred cceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEECC
Confidence 00 12588874 5999999995 788999999999873 2799999999964
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=134.16 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=88.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-c--ccccc--c--c-
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-Y--GMGTA--E--W- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~--~i~~~--~--~- 239 (348)
..|++|+++|.|+|+++| +++.||+++|||++++. ..| |.+|+++++|+++||.||+ | .+... . .
T Consensus 422 ~~gsmG~glpaaiGa~la-----~~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~ 494 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGFS-GME-VETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDP 494 (569)
T ss_pred CCccccccHHHHHHHHhc-----CCCcEEEEecCcccccc-HHH-HHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCc
Confidence 459999999999999998 26789999999999885 345 9999999999998888887 3 21100 0 0
Q ss_pred --cc-cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 240 --RA-AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 240 --~~-~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
.. .+.+||.+. ++|+++++|+ ++.++.+++++|++ .++|+|||+.+-
T Consensus 495 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIev~id 546 (569)
T PRK09259 495 SPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA---SGKPTLINVVID 546 (569)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEEC
Confidence 11 134688874 5999999996 78899999999875 389999999985
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=134.16 Aligned_cols=113 Identities=18% Similarity=0.131 Sum_probs=86.9
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-----cc
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW-----RA 241 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~-----~~ 241 (348)
..|.||+++|.|+|+++|. + +.+|+++|||++++. .. +|.+|++++||+++||.||+ |++..... ..
T Consensus 401 ~~g~mG~glpaaiGa~lA~----~-~r~v~i~GDG~f~m~-~~-EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~ 473 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS----G-KRILTLVGDGAFQMT-GW-ELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFND 473 (535)
T ss_pred ccchhhhHHHHHHHHHhCC----C-CCeEEEEeChHHHhH-HH-HHHHHHHcCCCcEEEEEECCccceeehhccCCCccc
Confidence 4599999999999999984 3 345789999999985 34 49999999999886666665 78654221 11
Q ss_pred cCCchHHh--hcCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 242 AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 242 ~~~~~~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
...+||.+ +++|+++.+|+ ++.++.+++++|++. .++|+|||+.+-
T Consensus 474 ~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lIev~i~ 521 (535)
T TIGR03394 474 LDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT--RGRFQLIEAMLP 521 (535)
T ss_pred CCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc--CCCeEEEEEECC
Confidence 23468877 45999999996 688999999988862 256899999873
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-12 Score=122.33 Aligned_cols=114 Identities=20% Similarity=0.153 Sum_probs=86.8
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCcccc-chhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN-QGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~-~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
..+.+|.++|.|+|+++|. +++.||++.|||++. .| ...|..|+++++|+++||.||+ |++...+.
T Consensus 58 ~~~~mG~alp~AiGaklA~----pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~ 131 (280)
T PRK11869 58 FHTLHGRAIPAATAVKATN----PELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLK 131 (280)
T ss_pred CCcccccHHHHHHHHHHHC----CCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCC
Confidence 3466999999999998874 789999999999975 33 3449999999999998888887 77643111
Q ss_pred --c--------ccCCchHHhh--cCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 240 --R--------AAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 240 --~--------~~~~~~~~~~--g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
. .....|+.+. ++|++++.. +-.++.++.+++++|+++ +||+|||+.+
T Consensus 132 g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~~---~Gp~lIeV~~ 192 (280)
T PRK11869 132 GFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIKH---KGLAIVDIFQ 192 (280)
T ss_pred CcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHhC---CCCEEEEEEC
Confidence 0 0112467664 589988762 245899999999999974 9999999985
|
|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-12 Score=121.14 Aligned_cols=115 Identities=23% Similarity=0.268 Sum_probs=88.2
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCc-cccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG-AANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR---- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG-a~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~---- 240 (348)
...+.+|.++|+|+|+++|. ++..||++.||| ++.+|. ..|..|+++++|+++||.||+ |++...+..
T Consensus 56 ~~~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~ 129 (279)
T PRK11866 56 GIHGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTP 129 (279)
T ss_pred CcccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCC
Confidence 34688899999999999985 788999999999 688873 449999999999988888887 677542111
Q ss_pred ----c--cC--C----chHHh--hcCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 241 ----A--AK--S----PSYYK--RGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 241 ----~--~~--~----~~~~~--~g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
. +. . .|+.+ .++|++.+. .+..++.++.+++++|+++ +||+|||+..
T Consensus 130 ~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~~---~Gps~I~v~~ 191 (279)
T PRK11866 130 RGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIKH---KGFSFIDVLS 191 (279)
T ss_pred CCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 0 10 1 16665 458887663 3557899999999999974 9999999974
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=135.69 Aligned_cols=113 Identities=25% Similarity=0.356 Sum_probs=87.6
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc--------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-------- 238 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-------- 238 (348)
+.|++|+++|.|+|+++|. +++.||+++|||++++. . ..|.+|+++++|+++||.||+ |++....
T Consensus 416 ~~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~-~-~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~ 489 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMT-N-QELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGR 489 (566)
T ss_pred ccccccchhhHhheeheec----CCCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCC
Confidence 4699999999999999885 78899999999999885 3 449999999999876666665 7764311
Q ss_pred --cccc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 239 --WRAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 239 --~~~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.... ..+||.+. ++|+.+.+|+ ++.++.++++ +.. +++|+|||+.+-+
T Consensus 490 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~---~~~p~lIeV~v~~ 542 (566)
T PRK07282 490 TSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT---EDVPMLIEVDISR 542 (566)
T ss_pred cccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc---CCCCEEEEEEeCC
Confidence 0111 24688874 5999999996 6888888885 332 4899999999865
|
|
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-12 Score=121.78 Aligned_cols=115 Identities=20% Similarity=0.225 Sum_probs=85.3
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCcc-ccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW----- 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa-~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~----- 239 (348)
+..|.+|.++|+|+|+++|. ++..||++.|||+ +++|. . .|..|+++++|+++||.||+ |++...+.
T Consensus 66 ~~~g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~mg~-~-eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~ 139 (286)
T PRK11867 66 GFHTIHGRALAIATGLKLAN----PDLTVIVVTGDGDALAIGG-N-HFIHALRRNIDITYILFNNQIYGLTKGQYSPTSP 139 (286)
T ss_pred chhhhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHhCCH-H-HHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCC
Confidence 34589999999999999984 7899999999996 77773 3 38899999999987777776 78743211
Q ss_pred --cc---c------CCchHHhh--cCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 240 --RA---A------KSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 240 --~~---~------~~~~~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
.. . ...++.+. ++|...+. +.-.++.++.+++++|+++ +||+|||+.+
T Consensus 140 ~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~~---~Gp~lIev~~ 201 (286)
T PRK11867 140 VGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINH---KGFSFVEILQ 201 (286)
T ss_pred CCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 00 0 01355554 46766552 2345799999999999863 9999999974
|
|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-12 Score=134.98 Aligned_cols=110 Identities=20% Similarity=0.144 Sum_probs=85.4
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccc----cc----
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTA----EW---- 239 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~----~~---- 239 (348)
.+.+|+++|.|+|+++| +++.|||++|||++++. .. +|.+|+++++|+++||.||+ |++... ..
T Consensus 424 ~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~-~~-eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~ 496 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHD-LN-GLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVF 496 (568)
T ss_pred ccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcC-cH-HHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchh
Confidence 47799999999999987 37789999999999875 24 48999999999887776666 774211 00
Q ss_pred -c---ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 240 -R---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 240 -~---~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
+ .....||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 497 ~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~---~~~p~lIev~i 548 (568)
T PRK07449 497 ERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP---TPGLTVIEVKT 548 (568)
T ss_pred hHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc---CCCCEEEEEeC
Confidence 1 1124678875 4999999995 78899999999874 38999999987
|
|
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-12 Score=120.26 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=83.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc-----
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~----- 240 (348)
..+.+|.++|+|+|+++|. +++.||++.|||++ .+| ...|..|+++++|+++||.||+ |++...+..
T Consensus 51 ~~t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~ 124 (287)
T TIGR02177 51 FHGLHGRALPVATGIKLAN----PHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLK 124 (287)
T ss_pred cccccccHHHHHHHHHHHC----CCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccC
Confidence 3466899999999999885 88999999999996 466 3449999999999988887777 787542211
Q ss_pred ---c----------cCCchHHhhc--CCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 241 ---A----------AKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 241 ---~----------~~~~~~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
. ...+++.+.+ +++.+.. .-.++.++.+++++|+++ +||+|||+.+
T Consensus 125 G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~-~~~~~~eL~~ai~~Al~~---~GpslIeV~~ 185 (287)
T TIGR02177 125 GVKTKSLPYPNIQDPVNPLLLAIALGYTFVARG-FSGDVAHLKEIIKEAINH---KGYALVDILQ 185 (287)
T ss_pred CcceeecccCccCCCCCHHHHHHhCCCCeEEEE-ecCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 0 0123455544 4444443 225899999999999864 9999999975
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=128.59 Aligned_cols=159 Identities=18% Similarity=0.088 Sum_probs=104.8
Q ss_pred hHHHHhcCCCHHHHHHH---HhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeC
Q 018967 124 HCTFLGRGGTLLEVFSE---LMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYG 200 (348)
Q Consensus 124 ~~~~l~~G~~~~~~~ae---l~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~G 200 (348)
+...+.-|++-..++.+ .+..+.-.+.+-|.+.-+..+...+....+.+|+++|.|+|+++|. +++.||+++|
T Consensus 354 r~~~~C~GCp~~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~p~~~~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~G 429 (595)
T TIGR03336 354 RPPSLCAGCPHRATFYAMKKVADREAIFPSDIGCYTLGIQPPLGTVDTTLCMGASIGVASGLSKAG----EKQRIVAFIG 429 (595)
T ss_pred CCCCCCCCCCChHHHHHHHHhccCCcEEecCcchhhccccCCccccceeeccCchHHHHhhhhhcC----CCCCEEEEec
Confidence 45556666665555444 3443332222222221111222234445689999999999998874 7789999999
Q ss_pred CccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc----------ccCCchHHh--hcCCcceEEEcC-CCHHH
Q 018967 201 DGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----------AAKSPSYYK--RGDYVPGLKVDG-MDALA 266 (348)
Q Consensus 201 DGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~----------~~~~~~~~~--~g~gipg~~VDG-~D~~a 266 (348)
||++.+....| |.+|+.+++|+++||.||+ |++...+.. .....||.+ +++|+++++|.. .|..+
T Consensus 430 DG~f~~~g~~e-L~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~ 508 (595)
T TIGR03336 430 DSTFFHTGIPG-LINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKE 508 (595)
T ss_pred cchhhhcCHHH-HHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHH
Confidence 99998632344 8889999999987777775 786542211 012357776 459999998853 45667
Q ss_pred HHHHHHHHHHHhccCCCEEEEEEE
Q 018967 267 VKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 267 v~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
+.+++++|++ .+||++|++..
T Consensus 509 l~~al~~a~~---~~gp~li~v~~ 529 (595)
T TIGR03336 509 TIEVFKAALA---AEGVSVIIAKQ 529 (595)
T ss_pred HHHHHHHHHh---cCCCEEEEEcc
Confidence 7888888886 38999999964
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.6e-10 Score=106.83 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=119.4
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc-
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR- 240 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~- 240 (348)
++...++.+|.+.++|.|++.|.+..+++..||++.|||++ .-| .++|.-|...+.++++||.||. |+++.-+..
T Consensus 63 ~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~ 140 (299)
T PRK11865 63 NVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG--FQSLSGAMERGHNILYLMYDNEAYMNTGIQRSG 140 (299)
T ss_pred ccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc--HHHHHHHHHcCCCeEEEEECCccccCCCCCCCC
Confidence 44556789999999999999998876777889999999997 455 3789999999999999999998 665321110
Q ss_pred --------------------ccCCchHHh--hcCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE--ecCCC
Q 018967 241 --------------------AAKSPSYYK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT--YRYHG 295 (348)
Q Consensus 241 --------------------~~~~~~~~~--~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t--~R~~G 295 (348)
.....|+.. .++|++.+ +++-.|+.++.+++++|+++ +||.||++.. ...++
T Consensus 141 ~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~---~Gps~I~v~sPC~~~~~ 217 (299)
T PRK11865 141 STPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEV---EGPAYIQVLQPCPTGWG 217 (299)
T ss_pred CCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC---CCCEEEEEECCCCCCCC
Confidence 001224444 34788776 56777999999999999974 9999999984 44455
Q ss_pred CCCCCCC--------C----CCCC-HHHHHHHHhcCCH-------HHHHHHHHHHcCC---CCHHHHHHHHHHHH
Q 018967 296 HSMSDPG--------S----TYRT-RDEISGVRQERDP-------IERIRKLILAHDL---ATEKELKVFIQLVY 347 (348)
Q Consensus 296 Hs~~D~~--------~----~YR~-~~e~~~~~~~~DP-------i~~~~~~L~~~g~---~t~~el~~i~~~~~ 347 (348)
+.+++.. + .||= +..++ ...+| ..-++++|..+|- ++++++++++++++
T Consensus 218 ~~~~~~~~~~klAvetg~~plye~~~g~~~---~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~v~ 289 (299)
T PRK11865 218 FPPEKTIEIGRLAVETGYWPLFEIENGKFK---ITYEPLHLDRRTRKPIEEYLKVQGRFKHLTEEDIEILQKYID 289 (299)
T ss_pred CCHHHHHHHHHHHHhcCceeEEEEECCeec---cCCCcccccccCCCCHHHHHhhCcchhcCCHHHHHHHHHHHH
Confidence 4433210 0 1220 00000 01122 2246666665543 68899999998875
|
|
| >COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.3e-10 Score=111.53 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=103.6
Q ss_pred ChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCc--cCCCccccch
Q 018967 98 DGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGF--YGGHGIVGAQ 175 (348)
Q Consensus 98 ~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~--~~~~g~lG~~ 175 (348)
.=||-+.--+...|+++|.|+.- .|. .+||-. -+...+...| .+.+|++|+.
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae---tGt-------------S~FG~~----------~~~lP~~~~~i~Q~lWGSIG~t 416 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE---TGT-------------SFFGAL----------DIRLPKGATFISQPLWGSIGYT 416 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc---ccc-------------ccccce----------eeecCCCCeEEcccchhhcccc
Confidence 46777777789999999999881 221 133321 1111222222 3458999999
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCccccccccccc-CCc-----hHH
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA-KSP-----SYY 248 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~~-~~~-----~~~ 248 (348)
+|.++|+++|. +++.+|.|+||||++.- +.| +.+-.+|+|| +|||++|++|.|-+-..... +.. ||.
T Consensus 417 ~pAalGa~~A~----~drR~IL~iGDGs~QlT-vQE-iStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~ 490 (557)
T COG3961 417 LPAALGAALAA----PDRRVILFIGDGSLQLT-VQE-ISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYT 490 (557)
T ss_pred cHhhhhhhhcC----CCccEEEEEcCchhhhh-HHH-HHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchh
Confidence 99999999997 67999999999999873 445 8888899997 78999999998755332211 111 333
Q ss_pred h--hcCCcce----EEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 249 K--RGDYVPG----LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 249 ~--~g~gipg----~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
+ .++|... .++ ...+.+..+++.+.+. .+++.+|||++.+
T Consensus 491 ~l~~afg~~~~~~~~~~--~~~~~l~~~~~~~~~~--~~~i~lIEv~lp~ 536 (557)
T COG3961 491 ALPEAFGAKNGEAKFRA--TTGEELALALDVAFAN--NDRIRLIEVMLPV 536 (557)
T ss_pred hhhhhcCCCCceEEEee--cChHHHHHHHHHHhcC--CCceEEEEEecCc
Confidence 3 1344322 222 2344555666655542 2789999998754
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-10 Score=129.66 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=87.9
Q ss_pred cCCCccccc--hhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHC--CCCeEEEEecCC-ccccccc--
Q 018967 166 YGGHGIVGA--QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW--DLPAILVCENNH-YGMGTAE-- 238 (348)
Q Consensus 166 ~~~~g~lG~--~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~--~LPvI~Vv~NN~-~~i~~~~-- 238 (348)
.++.|.+|. ++|.|+|+++|. ++.|+|++|||++.+. . .+|.+|+++ ++|+++||.||+ |++-...
T Consensus 755 ~~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~-~-~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~ 827 (1655)
T PLN02980 755 AGNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD-T-NGLSILSQRIARKPMTILVINNHGGAIFSLLPI 827 (1655)
T ss_pred EecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh-h-hHHHHhhcccCCCCEEEEEEeCCCcHhhhcCcc
Confidence 345689998 599999999884 6789999999999874 3 449999884 999887777766 6654311
Q ss_pred ----c-----c---ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 239 ----W-----R---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 239 ----~-----~---~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
. . ....+||.+. +||+++.+|+ +++++.+++++|.+ .++|+|||+.|-|
T Consensus 828 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~---~~~p~lIEV~t~~ 890 (1655)
T PLN02980 828 AKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV---EQMDCVVEVESSI 890 (1655)
T ss_pred CCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc---cCCCEEEEEecCh
Confidence 0 1 0123578774 5999999996 78899999988775 3899999999865
|
|
| >KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=106.00 Aligned_cols=122 Identities=20% Similarity=0.303 Sum_probs=89.3
Q ss_pred CCCCcc-CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEe-cCC-cccccc
Q 018967 161 KDSGFY-GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNH-YGMGTA 237 (348)
Q Consensus 161 ~~~~~~-~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~-NN~-~~i~~~ 237 (348)
|.+.+. +.+|.||-|++.|+++|++. |++.|+|+-||++++.. .+| +.+++++|||++.||. ||+ ||..+.
T Consensus 420 Pr~rLDaGtfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGfS-aME-~ET~vR~~Lpvv~vV~NN~Giyg~d~~ 493 (571)
T KOG1185|consen 420 PRRRLDAGTFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGFS-AME-LETFVRYKLPVVIVVGNNNGIYGLDDD 493 (571)
T ss_pred cccccCCccccccccchhHHHHHHhhC----CCCeEEEEecCcccCcc-hhh-HHHHHHhcCCeEEEEecCCcccccCcc
Confidence 333443 45799998888888887775 99999999999999874 466 8999999999876666 545 555432
Q ss_pred ccc---------------ccCCchHHh--hcCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 238 EWR---------------AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 238 ~~~---------------~~~~~~~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
... ...+.+|.+ .++|..|+.|+ .++++..+++++... .++|+||.+..-+
T Consensus 494 ~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q~--~~~psvINVlI~p 561 (571)
T KOG1185|consen 494 GWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQD--TDKPSVINVLIGP 561 (571)
T ss_pred cHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHhc--CCCCeEEEEEecc
Confidence 211 112234554 46899999997 789999999888762 2699999998743
|
|
| >COG3960 Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-09 Score=104.25 Aligned_cols=157 Identities=25% Similarity=0.296 Sum_probs=115.3
Q ss_pred HHHHHHhCCCCCCCCCCCC-------CcCCCCCCCCc-cCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Q 018967 136 EVFSELMGRKDGCSHGKGG-------SMHFYKKDSGF-YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQG 207 (348)
Q Consensus 136 ~~~ael~g~~~g~~~G~gg-------s~h~~~~~~~~-~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G 207 (348)
+-|.+.||++.....--|- -.|.+.|.+.+ .+..|++|+.+|.|+|+..| .+++-+|++.||-.++.
T Consensus 377 eemn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydfqf- 451 (592)
T COG3960 377 EEMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQF- 451 (592)
T ss_pred HHHHhhcCCceeEEEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchHHH-
Confidence 4456678887643221111 26777776544 45679999999999999766 48899999999999985
Q ss_pred hHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCC-------------c-------hHHh--hcCCcceEEEcCCCH
Q 018967 208 QLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKS-------------P-------SYYK--RGDYVPGLKVDGMDA 264 (348)
Q Consensus 208 ~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~-------------~-------~~~~--~g~gipg~~VDG~D~ 264 (348)
..|.|...++++||-|+|+.||.| |.....++.+.. + |..+ .|.|+..++| .+|
T Consensus 452 -mieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv--~~p 528 (592)
T COG3960 452 -LIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV--FKP 528 (592)
T ss_pred -HHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEe--cCh
Confidence 578899999999999999999998 654433332210 0 1111 2456777888 478
Q ss_pred HHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCC
Q 018967 265 LAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSD 300 (348)
Q Consensus 265 ~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D 300 (348)
.++..|+.+|.....+ .-|++||+..-|...-+|.-
T Consensus 529 ~e~a~af~~a~~lm~eh~vpvvve~ilervtnismgt 565 (592)
T COG3960 529 EDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMGT 565 (592)
T ss_pred HHhhHHHHHHHHHHHhcCCCeeeehHHHHhhcccccc
Confidence 8999999999887767 77999999999988777653
|
|
| >KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.6e-09 Score=103.46 Aligned_cols=116 Identities=23% Similarity=0.320 Sum_probs=92.7
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-cccccccc-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWR----- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~----- 240 (348)
++.|.+|.++|.|+|+..|. ++.+||-+-||+++++- ..| |.++.+.++||-+++.||.- ||.+..+.
T Consensus 521 GGLGtMGfGLPAAIGAsVA~----P~~iViDIDGDaSF~Mt-~~E-Lat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~ 594 (675)
T KOG4166|consen 521 GGLGTMGFGLPAAIGASVAN----PDAIVIDIDGDASFIMT-VQE-LATIRQENLPVKILILNNEEQGMVTQWQDLFYEA 594 (675)
T ss_pred CCccccccCcchhhcccccC----cccEEEeccCCceeeee-hHh-hhhhhhcCCceEEEEecchhhhhHHHHHHHHHHh
Confidence 56799999999999998774 99999999999999874 455 99999999999877777774 88664332
Q ss_pred -----ccCCchHHhhc--CCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 241 -----AAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 241 -----~~~~~~~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
...+|+|.+.+ +|+++.+|. .-+++.+.+++.+. .+||+|+|+.+...
T Consensus 595 rysHThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefls---TkGPvLleV~v~~k 649 (675)
T KOG4166|consen 595 RYSHTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFLS---TKGPVLLEVIVPHK 649 (675)
T ss_pred hhccccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHhC---CCCCeEEEEEccCc
Confidence 11357887764 899999996 56788888888775 49999999988654
|
|
| >COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-06 Score=89.29 Aligned_cols=132 Identities=23% Similarity=0.156 Sum_probs=96.8
Q ss_pred cCCCccccchhHHHHHHHHHHHhC-------CCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcccccc
Q 018967 166 YGGHGIVGAQIPLGCGLAFAQKYS-------KDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTA 237 (348)
Q Consensus 166 ~~~~g~lG~~lp~A~G~A~A~k~~-------~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~ 237 (348)
..++++||-+.-.|+=-|.-.||- .++..|+||.|||.+.++...+|+.+|++++|. +||||+.|.-....|
T Consensus 188 qFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgp 267 (887)
T COG2609 188 QFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGP 267 (887)
T ss_pred ccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCc
Confidence 446789999989999989888873 367899999999999999999999999999998 579999887544322
Q ss_pred cccc---------------------------------------------cCCchHHh---h-c-------CC--------
Q 018967 238 EWRA---------------------------------------------AKSPSYYK---R-G-------DY-------- 253 (348)
Q Consensus 238 ~~~~---------------------------------------------~~~~~~~~---~-g-------~g-------- 253 (348)
.... ..+-+|.. + | ++
T Consensus 268 VrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aL 347 (887)
T COG2609 268 VRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAAL 347 (887)
T ss_pred ccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHH
Confidence 1100 00111211 0 0 11
Q ss_pred --------cceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018967 254 --------VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 254 --------ipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (348)
+-.+.--|||+..|++|++.|.++ +++|+||-++|.+++|-..+
T Consensus 348 Va~~tD~diw~L~rGGHD~~ki~aA~~~A~~~--kg~PtvilA~TIKGyglg~~ 399 (887)
T COG2609 348 VADMTDDDIWALNRGGHDPEKVYAAFKKAQEH--KGRPTVILAKTIKGYGLGEA 399 (887)
T ss_pred HHhccHHHHHHHhcCCCCHHHHHHHHHHHhcC--CCCceEEEEeeeccccCchh
Confidence 111234599999999999999984 25899999999999887543
|
|
| >KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-06 Score=88.84 Aligned_cols=115 Identities=20% Similarity=0.177 Sum_probs=78.8
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCccccccccccc---
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA--- 242 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~~--- 242 (348)
..+|++|+.+|.++|+++|. +++++|.|+|||+++.- +.| +.++.+|+|| .||+++|++|-|-.......
T Consensus 412 ~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~qlT-vQe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn~ 485 (561)
T KOG1184|consen 412 MQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQLT-VQE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYND 485 (561)
T ss_pred EEEeeccccchhhhhhhhcc----CCceEEEEecCccceee-HHH-HHHHHhcCCCcEEEEEeCCceEEEEeecCCCccc
Confidence 34799999999999999986 67899999999999874 455 8888999998 56888888997754332211
Q ss_pred -CCchHHh--hcCC-----cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018967 243 -KSPSYYK--RGDY-----VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (348)
Q Consensus 243 -~~~~~~~--~g~g-----ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (348)
..-+|.+ .++| ....+| ..-.+..++.+.+... + ++|.+|||...
T Consensus 486 I~~Wd~~~l~~afg~~~gk~~~~~v--~~~~e~~~~~~~~~~~--~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 486 IQNWDYTALLEAFGAGEGKYETHKV--RTEEELVEAIKDATFE--KNDKIRLIEVILP 539 (561)
T ss_pred cccchHHHHHHhhcCccceeEEeee--ccchHHHHHHhhhhhc--ccCceEEEEEecC
Confidence 0123433 2332 223333 2234566666666531 3 78999999863
|
|
| >COG3962 Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-06 Score=86.67 Aligned_cols=121 Identities=20% Similarity=0.267 Sum_probs=89.6
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccc-ccccc----c--
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYG-MGTAE----W-- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~-i~~~~----~-- 239 (348)
+.+.+|+-+.-++|+. ...+++-|++++|||++.+ .+..|.++..++..+++|+.+| +|| |..-+ .
T Consensus 442 gfSCMGYEiaG~lG~K----~a~pdreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~s 515 (617)
T COG3962 442 GFSCMGYEIAGGLGAK----AAEPDREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGAS 515 (617)
T ss_pred cccccccccccccccc----cCCCCCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcch
Confidence 4578999888888876 4568899999999999986 5677999999999987666555 586 32111 0
Q ss_pred -----------cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCC
Q 018967 240 -----------RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPG 302 (348)
Q Consensus 240 -----------~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~ 302 (348)
......||++- +||...++|. ++.++.+|++.|++ +.+++||+++|.- +.+.|++
T Consensus 516 f~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~---~~~ttvi~I~t~P---~~~t~~g 583 (617)
T COG3962 516 FNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA---SDRTTVIVIDTDP---KTTTDDG 583 (617)
T ss_pred hhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh---CCCCEEEEEecCC---ccccCCC
Confidence 11234578774 5999999995 88888888887775 3899999998753 3455543
|
|
| >COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.4e-05 Score=75.40 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=83.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCcc-ccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------ 238 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa-~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------ 238 (348)
..++.-|-+.++|.|+.+|. ++..||++.|||. +..|. ..+--|...+..+.+||.||. |+.+.-+
T Consensus 67 ~~hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp 140 (294)
T COG1013 67 WVHSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTP 140 (294)
T ss_pred ceeeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCeecccCCCccCCCCC
Confidence 44688899999999999987 5668999999995 57773 448888899999998888888 6754211
Q ss_pred -cccc---C------Cc-hHHh--hcCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 239 -WRAA---K------SP-SYYK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 239 -~~~~---~------~~-~~~~--~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
...+ + .+ |... .++|.+.+ ++---++..+.+.+++|+++ +||.||++.+
T Consensus 141 ~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~---~Gps~I~v~s 203 (294)
T COG1013 141 KGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH---KGPSFIDVLS 203 (294)
T ss_pred CCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc---cCCeEEEEec
Confidence 1100 0 11 2222 34676655 55445799999999999986 8999999975
|
|
| >PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.1e-06 Score=81.15 Aligned_cols=139 Identities=19% Similarity=0.212 Sum_probs=75.9
Q ss_pred CcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHC-CC----CeEEEEec
Q 018967 155 SMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-DL----PAILVCEN 229 (348)
Q Consensus 155 s~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~-~L----PvI~Vv~N 229 (348)
..|....-.|-.--.|-||+.+..|.|+++ .+||-+++|++|||++.+|-.. +-+.+..+ +- -|+=|+.=
T Consensus 125 pSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGplA-~sWh~~kflnP~~dGaVLPILhL 199 (379)
T PF09364_consen 125 PSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGPLA-ASWHSNKFLNPATDGAVLPILHL 199 (379)
T ss_dssp -SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHHHH-HHGGGGGSS-TTTS-EEEEEEEE
T ss_pred ccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCccc-ccccccceeCcccCceeeceEEe
Confidence 456654333444456888888888888875 4599999999999999998532 22223222 21 14445555
Q ss_pred CCcccccccccccC-CchHHh--hcCCcceEEEcCCCHHHHHHHHHHHHHH-----------hccC----CC--EEEEEE
Q 018967 230 NHYGMGTAEWRAAK-SPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEH-----------ALKN----GP--MILEMD 289 (348)
Q Consensus 230 N~~~i~~~~~~~~~-~~~~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~-----------ar~~----gP--~lIe~~ 289 (348)
|+|-|+.++--... ..++.+ +|+|..-+.|+|.|+.++.+.+..+++. +|++ +| -+|.++
T Consensus 200 NG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~prwPmivlR 279 (379)
T PF09364_consen 200 NGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAYRPRWPMIVLR 279 (379)
T ss_dssp -SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS----EEEEEEE
T ss_pred cCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcEEEEE
Confidence 89988876532211 223444 5788888999999999998766555433 2221 23 267788
Q ss_pred EecCCCCCC
Q 018967 290 TYRYHGHSM 298 (348)
Q Consensus 290 t~R~~GHs~ 298 (348)
|.+.++-..
T Consensus 280 tPKGWtgP~ 288 (379)
T PF09364_consen 280 TPKGWTGPK 288 (379)
T ss_dssp --TTTTS-S
T ss_pred CCcccCCcc
Confidence 888765543
|
PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A. |
| >cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0017 Score=64.21 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=63.6
Q ss_pred cEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCC-ccccc-------cccccc---------CCchHHh--hcC
Q 018967 193 TVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGT-------AEWRAA---------KSPSYYK--RGD 252 (348)
Q Consensus 193 ~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~-------~~~~~~---------~~~~~~~--~g~ 252 (348)
.-||++.|||.+ ..| +..+.-|...+.++++||.||. |+.+. |....+ .-.|+.. .++
T Consensus 152 ~~v~v~gGDG~~ydIG--~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIG--YGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccc--hhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 479999999965 666 3447667778888888887777 77642 111100 0113332 347
Q ss_pred CcceE-EEc-CCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 253 YVPGL-KVD-GMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 253 gipg~-~VD-G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
|.+++ ++- |-++.++.+++++|.++ +||.+|++.+.
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~~---~Gps~I~v~sP 267 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEAY---DGPSLIIAYSP 267 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhcC---CCCEEEEEEcc
Confidence 77665 443 35899999999999975 99999999863
|
This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra |
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00032 Score=72.95 Aligned_cols=112 Identities=24% Similarity=0.241 Sum_probs=79.8
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCcccc-chhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccc----
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN-QGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRA---- 241 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~-~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~---- 241 (348)
.+-.+|.++++|-|++++. .+.+|+++|||.+. .|. .++.-|+.-+.+++++|.+|.+ +|+..+..-
T Consensus 426 ~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~ 498 (640)
T COG4231 426 TTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGV 498 (640)
T ss_pred hhhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCccc
Confidence 3456777788888887663 37899999999984 553 4488888999999999999998 776543221
Q ss_pred ------cCCchHH--hhcCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018967 242 ------AKSPSYY--KRGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMD 289 (348)
Q Consensus 242 ------~~~~~~~--~~g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (348)
+...++. .++.|+..++ ||=.|+..+.+++++|+++ .||.||.++
T Consensus 499 ~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~---~gpsViiak 552 (640)
T COG4231 499 AAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEV---PGPSVIIAK 552 (640)
T ss_pred ccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcC---CCceEEEEc
Confidence 1111222 2567766554 4657899999999998875 889988764
|
|
| >COG3957 Phosphoketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0024 Score=67.20 Aligned_cols=112 Identities=19% Similarity=0.225 Sum_probs=74.5
Q ss_pred CcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHH-HHCCCC----eEEEEec
Q 018967 155 SMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIA-ALWDLP----AILVCEN 229 (348)
Q Consensus 155 s~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~A-a~~~LP----vI~Vv~N 229 (348)
..|...--.|....-|.||+++..|.|+|+ ..|+-++.|++|||....|... +-..+ .-++.+ ++=|..=
T Consensus 138 ~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgpla-tsWhs~kf~np~~dGavLPIL~l 212 (793)
T COG3957 138 GSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLA-TSWHSNKFLNPARDGAVLPILHL 212 (793)
T ss_pred ccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCccc-cccccccccCccccCceeeEEEe
Confidence 456665444666667899999999998876 4599999999999987776522 22333 222322 4555566
Q ss_pred CCcccccccccccC-CchHHh--hcCCcceEEEcCCCHHHHHHHH
Q 018967 230 NHYGMGTAEWRAAK-SPSYYK--RGDYVPGLKVDGMDALAVKQAC 271 (348)
Q Consensus 230 N~~~i~~~~~~~~~-~~~~~~--~g~gipg~~VDG~D~~av~~a~ 271 (348)
|+|.|..+.-.... ..++.+ .|+|..-+.|+|.|+.++.+..
T Consensus 213 NGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 213 NGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred cceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 99998876543222 233444 4788888889998988855443
|
|
| >COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0031 Score=64.95 Aligned_cols=107 Identities=21% Similarity=0.169 Sum_probs=69.6
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCccccc--cc-------ccccC
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGT--AE-------WRAAK 243 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~--~~-------~~~~~ 243 (348)
.-++-|+|++.|. ...+|.++||=++-.- .-.|-+......| +|+|++||+-||-. |+ ++.+.
T Consensus 426 G~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~ 498 (566)
T COG1165 426 GTVSTALGIARAT-----QKPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFG 498 (566)
T ss_pred hhHHHHhhhhhhc-----CCceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcC
Confidence 3456688888763 4569999999998421 1125555666677 46777777777643 11 11121
Q ss_pred ---CchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 244 ---SPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 244 ---~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.-||... .|++.+.+++ .+.++.+++..+..+ .|-.|||++|-|
T Consensus 499 tPh~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~~---~g~~viEvkt~r 547 (566)
T COG1165 499 TPHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWRR---SGTTVIEVKTDR 547 (566)
T ss_pred CCCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhccC---CCcEEEEEecCh
Confidence 2356553 3788777775 477888888776642 778999999876
|
|
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.06 Score=61.15 Aligned_cols=94 Identities=16% Similarity=0.119 Sum_probs=64.1
Q ss_pred cEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCC-ccccc-------cccccc---------CCchHHh--hcC
Q 018967 193 TVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGT-------AEWRAA---------KSPSYYK--RGD 252 (348)
Q Consensus 193 ~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~-------~~~~~~---------~~~~~~~--~g~ 252 (348)
.-+|++.|||.+ ..| +..+.-+...+.++.+||.||. |+.+. |....+ .-.|... .++
T Consensus 952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 369999999965 666 2347777788999888887777 76532 211110 1112222 347
Q ss_pred CcceE-EEc-CCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 253 YVPGL-KVD-GMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 253 gipg~-~VD-G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
|.+++ ++. |-++.++.+++++|.++ +||.+|++.+.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~---~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAY---DGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcC---CCCEEEEEECC
Confidence 76665 554 56899999999999875 99999999864
|
This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase. |
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.082 Score=44.97 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhhcCCc
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYV 254 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~g~gi 254 (348)
..+|.|.+++- ...++++..|.|..+ ..+.+-.|...++|+|+++...+.. ..... ....+.....-.+
T Consensus 48 ~~~A~G~a~~~----~~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~~~~---~q~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARAG----GPPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQAKQT---FQSMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHhh----CCEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhccCc---ccccCHHHHHHHh
Confidence 44566666552 322233344888875 4677778888899999999766542 11111 1111111111123
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (348)
+...+--.++.+..+.+..|...+.. .||++|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 118 PEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 32322224566677777777776666 89999976
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.18 Score=44.42 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|-|.+.+ .++-.++++..|=|.+|. .-++..|..-++|+|+|+-+.... .+.. .....|... +.+--
T Consensus 53 mA~gyar~---tg~~~v~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~I~g~~~~~~~~~~---~~q~~d~~~~~~~~tk 123 (164)
T cd07039 53 AASAEAKL---TGKLGVCLGSSGPGAIHL---LNGLYDAKRDRAPVLAIAGQVPTDELGTD---YFQEVDLLALFKDVAV 123 (164)
T ss_pred HHHHHHHH---hCCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCcccccCCC---CCcccCHHHHHHHhhc
Confidence 45566544 234566777778888873 456777888999999998765532 1111 011112111 11112
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (348)
...+|+ ++..+.+++.+|+..+.. .||+.|++
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 124 YNETVT--SPEQLPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 224554 788888888888888777 89999997
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ |
| >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.2 Score=43.03 Aligned_cols=105 Identities=20% Similarity=0.269 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHhhcCC
Q 018967 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGDY 253 (348)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~~g~g 253 (348)
...+|.|.+++. ++-.++++..|=|..+ ..+++..|...++|+|++.-+... .............++.+ .+-
T Consensus 46 A~~~A~g~~~~~---~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~-~~~ 118 (155)
T cd07035 46 AVGMADGYARAT---GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFR-PIT 118 (155)
T ss_pred HHHHHHHHHHHH---CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCcccccCHHHHHH-HHh
Confidence 344556665552 2223444444666666 467888888999999988865443 22211100000111111 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEM 288 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~ 288 (348)
....++ .++.++.+.+.+|...+.. +||+.|++
T Consensus 119 ~~~~~i--~~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 119 KWAYRV--TSPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred ceEEEc--CCHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 223455 4788899999999988866 58999986
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio |
| >PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.059 Score=60.71 Aligned_cols=113 Identities=19% Similarity=0.099 Sum_probs=75.2
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCCc-cccccccc--ccC
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWR--AAK 243 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~--~~~ 243 (348)
+...||+....++|.+.+. +++.+|+++|||.+ ..|. -++.-|..-+.+++++|.+|.. +|+..++. ...
T Consensus 479 ~~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~ 552 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLS 552 (1165)
T ss_pred eeeccCCcchhhceecccc----CCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcc
Confidence 4567888888888987652 34679999999998 4553 3477788889999888888876 88654432 223
Q ss_pred CchHHh--hcCCcceEEEcCCCHHHHH-----------------HHHHHHHHHhcc-CCCEEEEEE
Q 018967 244 SPSYYK--RGDYVPGLKVDGMDALAVK-----------------QACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 244 ~~~~~~--~g~gipg~~VDG~D~~av~-----------------~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
..++.. ++.|+.-+.|=-.|+.... +++++++ |+ +|+++|...
T Consensus 553 ~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~l---r~~~GvsViI~~ 615 (1165)
T PRK09193 553 VPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQREL---REIPGVTVLIYD 615 (1165)
T ss_pred hhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHH---hcCCCcEEEEEc
Confidence 345544 4678776655333555543 4444444 35 899888654
|
|
| >PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.051 Score=61.31 Aligned_cols=112 Identities=18% Similarity=0.090 Sum_probs=73.2
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCCc-cccccccccc--CC
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAA--KS 244 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~--~~ 244 (348)
...||+....++|++.+. .++.+|+++|||.+ ..|.. ++.-|..-+.+++++|.+|.. +|+..++.-. ..
T Consensus 467 ~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~v 540 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQPVDGSISV 540 (1159)
T ss_pred eeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCCH
Confidence 457888888888888662 34569999999998 46643 688888889999988888887 8866443221 11
Q ss_pred chHHh--hcCCcceEEEcCCCHHH----------------HHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 245 PSYYK--RGDYVPGLKVDGMDALA----------------VKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 245 ~~~~~--~g~gipg~~VDG~D~~a----------------v~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
+.+.. ++.|+.-+.|=-.||.. ..+++++++ |+ +||++|...
T Consensus 541 ~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~~ 601 (1159)
T PRK13030 541 PQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIYD 601 (1159)
T ss_pred HHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEEc
Confidence 23222 46787766553234433 234444444 24 889888654
|
|
| >cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.26 Score=42.59 Aligned_cols=87 Identities=23% Similarity=0.116 Sum_probs=56.8
Q ss_pred EEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHhhc-CC--cceEEEcCCCHHHHHH
Q 018967 194 VTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRG-DY--VPGLKVDGMDALAVKQ 269 (348)
Q Consensus 194 ~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~~g-~g--ipg~~VDG~D~~av~~ 269 (348)
++++..|-|..| ....|-.|...+.|+|+++-+... ..+.+ ... ..++.... .+ .+..++ .++.++.+
T Consensus 67 v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 138 (160)
T cd07034 67 AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLP-KPD--QSDLMAARYGGHPWPVLAP--SSVQEAFD 138 (160)
T ss_pred EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCC-CcC--cHHHHHHHhCCCCEEEEeC--CCHHHHHH
Confidence 778888999887 355677787889999999866443 22211 000 11111111 12 333444 47899999
Q ss_pred HHHHHHHHhcc-CCCEEEEE
Q 018967 270 ACKFAKEHALK-NGPMILEM 288 (348)
Q Consensus 270 a~~~A~~~ar~-~gP~lIe~ 288 (348)
.++.|...++. ++|++|..
T Consensus 139 ~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 139 LALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHHHHHhCCCEEEEc
Confidence 99999998888 88998865
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th |
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.24 Score=43.10 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHH-HHHHCCCCeEEEEecCCcccccccccccCCchHHhhcCCc
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN-IAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYV 254 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn-~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g~gi 254 (348)
+++|.|+|+. + -++++..+ ..+.+ ..++.+. .++.+++|+++++...+++.+..........++.-. -.+
T Consensus 52 vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~-~~i 122 (156)
T cd07033 52 VGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALL-RAI 122 (156)
T ss_pred HHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHh-cCC
Confidence 3556677653 2 44555555 44433 3455565 999999999999887665432211111111222221 246
Q ss_pred ceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 255 PGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 255 pg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
|++.| .-.|+.+++..+++|++. ++|++|-+
T Consensus 123 Pg~~v~~Ps~~~~~~~ll~~a~~~---~~P~~irl 154 (156)
T cd07033 123 PNMTVLRPADANETAAALEAALEY---DGPVYIRL 154 (156)
T ss_pred CCCEEEecCCHHHHHHHHHHHHhC---CCCEEEEe
Confidence 66654 456899999999999863 77998754
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included |
| >TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.19 E-value=1.1 Score=39.19 Aligned_cols=104 Identities=11% Similarity=0.059 Sum_probs=64.2
Q ss_pred cchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHH-HCCCCeEEEEecCCc-ccccccccccCCchHHh-
Q 018967 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAA-LWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK- 249 (348)
Q Consensus 173 G~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa-~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~- 249 (348)
+.+..+|.|..++ .+..++|+.+=|.. ...-++..|. ..++|+|+++-.-+. +...+.. .....+..
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q--~~~g~~~~~ 113 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGVYKEKIPAQ--IPMGRATPK 113 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccc--cchhhhhHH
Confidence 4555666666543 45567888877743 3555677788 899999999843332 2111111 00001111
Q ss_pred --hcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 250 --RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 250 --~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
...+++...++ +++++ .++.+|...+.+ +||+.|-+.
T Consensus 114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 11456777774 58888 999999988877 899988663
|
This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.23 Score=56.17 Aligned_cols=115 Identities=15% Similarity=0.071 Sum_probs=70.9
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCCc-cccccccccc--CC
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAA--KS 244 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~--~~ 244 (348)
...||+....++|.+-+. ++..+|+++|||.+ ..|. -++.-|..-+.+++++|.+|.. +|+..++.-. ..
T Consensus 494 ~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~v 567 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLTV 567 (1186)
T ss_pred eeccCcchhhheeecccC----CCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCCH
Confidence 467788888888887552 34569999999998 4553 3477888889999888888886 8865443211 11
Q ss_pred chHHh--hcCCcceEEEcCCCHHHHH--------------HHHHHHHHHhcc-CCCEEEEEE
Q 018967 245 PSYYK--RGDYVPGLKVDGMDALAVK--------------QACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 245 ~~~~~--~g~gipg~~VDG~D~~av~--------------~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
+.+.. ++.|+.-+.|=-.|+..+. +.++...+..|+ +|+++|...
T Consensus 568 ~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~~ 629 (1186)
T PRK13029 568 PQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIYD 629 (1186)
T ss_pred HHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 23322 5677766655222443332 223333333335 888887653
|
|
| >PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.37 Score=42.36 Aligned_cols=106 Identities=21% Similarity=0.163 Sum_probs=61.0
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--h
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--R 250 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~ 250 (348)
...-+|.|.+++. ++-.++++..|=|.+|. .-++..|...+.|+|+|+-+-.. ..... ..+ ...|... +
T Consensus 50 ~A~~~A~g~ar~~---g~~~v~~~~~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q-~~~d~~~~~~ 121 (172)
T PF02776_consen 50 GAAFMADGYARAT---GRPGVVIVTSGPGATNA---LTGLANAYADRIPVLVITGQRPSAGEGRG-AFQ-QEIDQQSLFR 121 (172)
T ss_dssp HHHHHHHHHHHHH---SSEEEEEEETTHHHHTT---HHHHHHHHHTT-EEEEEEEESSGGGTTTT-STT-SSTHHHHHHG
T ss_pred hhHHHHHHHHHhh---ccceEEEeecccchHHH---HHHHhhcccceeeEEEEecccchhhhccc-ccc-cchhhcchhc
Confidence 3445566666553 23344555555666653 34566688889999999876654 23211 111 0112221 1
Q ss_pred cCCcceEEEcCCCHHHHHHHHHHHHHHh-cc-CCCEEEEEE
Q 018967 251 GDYVPGLKVDGMDALAVKQACKFAKEHA-LK-NGPMILEMD 289 (348)
Q Consensus 251 g~gipg~~VDG~D~~av~~a~~~A~~~a-r~-~gP~lIe~~ 289 (348)
.+.-...+++ ++.++.+++++|+..+ .. .||+.|++-
T Consensus 122 ~~~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 122 PVTKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp GGSSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred cccchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 2333346674 5777788888888777 44 899999984
|
It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B .... |
| >PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.65 Score=46.46 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=74.4
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh-h-
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK-R- 250 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~-~- 250 (348)
+.+.+++|++++ +..+++...-+++. -.+|.+.+|+-..+|+++++.+... +.+-+.. ....|+.. +
T Consensus 59 aA~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~--~~q~D~~~~~~ 128 (376)
T PRK08659 59 ASMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGPSTGQPTK--PAQGDMMQARW 128 (376)
T ss_pred HHHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCC--cCcHHHHHHhc
Confidence 456677888776 34455554444443 3589999999999998877776542 2222221 11123222 2
Q ss_pred c-CC-cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC
Q 018967 251 G-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 251 g-~g-ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~ 299 (348)
| +| +|-+.+.-.|+.+++.-...|.+.+.+ .-|++|-..++ -+|+..
T Consensus 129 ~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 129 GTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred ccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 2 33 555666778999999999999988877 88999999884 778753
|
|
| >cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Probab=93.13 E-value=1.1 Score=39.18 Aligned_cols=106 Identities=12% Similarity=0.120 Sum_probs=61.6
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-ccccc--cccc--CC-chH
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAE--WRAA--KS-PSY 247 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~--~~~~--~~-~~~ 247 (348)
...-+|-|.+.+. .-.++++..|=|.+| ..-++..|...+.|+|+++-+.... .++.. .... .. .|.
T Consensus 46 ~A~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~ 118 (162)
T cd07038 46 NAGYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVF 118 (162)
T ss_pred HHHHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHH
Confidence 3334556666543 234455556888777 3456778888999999998765432 11110 0000 00 011
Q ss_pred Hh--hcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018967 248 YK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (348)
Q Consensus 248 ~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (348)
.. +.+--...+|. +++.+.+++++|...+.+ +||++|++
T Consensus 119 ~~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 119 LKMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 11 11222234553 677888888888888877 89999986
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many |
| >PRK07119 2-ketoisovalerate ferredoxin reductase; Validated | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.2 Score=44.26 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=75.6
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCch-HHh-h-
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS-YYK-R- 250 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~-~~~-~- 250 (348)
+.+.+++|+++| +.++++.+-+..+. -.+|.+.+|+-..+|+++++.+-. +-++.. .+....| ++. +
T Consensus 59 aA~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~~g~-t~~eq~D~~~~~~~ 128 (352)
T PRK07119 59 AAINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPGLGN-IQPSQGDYFQAVKG 128 (352)
T ss_pred HHHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCCCCC-CcchhHHHHHHHhc
Confidence 456677888876 45577777777765 368999999999999887776643 211111 1111112 222 2
Q ss_pred -cCC-cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018967 251 -GDY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 251 -g~g-ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~ 298 (348)
|.| .+-+..+-.|+.++++-..+|.+.+.+ .-|+++-..++ -+|+.
T Consensus 129 ~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (352)
T PRK07119 129 GGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMM 177 (352)
T ss_pred CCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCce
Confidence 222 444566778999999999999988877 88999999885 36654
|
|
| >cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.1 Score=39.52 Aligned_cols=104 Identities=20% Similarity=0.162 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCccc-ccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i-~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|-|.|.+ .++-.++++..|=|.+| ..-++..|...+.|+|+|+-+-.... ... .-+ ..|... +..-
T Consensus 49 ~mAdgyar~---sg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~l~~~vt 119 (162)
T cd07037 49 FFALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGTG-ANQ--TIDQVGLFGDYV 119 (162)
T ss_pred HHHHHHHHh---hCCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCCC-CCc--ccchhhhcccee
Confidence 345566544 34445666667888877 24457778888999999986544321 110 000 111111 0000
Q ss_pred cceEEE-cCCC---HHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKV-DGMD---ALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~V-DG~D---~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
-...+| +..+ ...+.+.+++|+..++. .||++|++-
T Consensus 120 k~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 120 RWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred eEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 111233 2122 22266666777666655 699999873
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim |
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=1.1 Score=48.18 Aligned_cols=110 Identities=20% Similarity=0.162 Sum_probs=70.3
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.+. +.+|.|+|+. +.-.++++.+. .|.+ -.++.+.+++..+|||+||+...+.+.+.......+..|+
T Consensus 408 ~GIaEq~mv~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~iedi 480 (661)
T PTZ00089 408 FGVREHAMCAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETL 480 (661)
T ss_pred eeecHHHHHHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHHH
Confidence 4555444 3567777752 22255666554 6766 7788899999999999999988887654322222222344
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
.-. -.+|.+.| .=-|..++..+++.|++. .++|+.|-+
T Consensus 481 a~l-R~iPn~~V~~PaD~~E~~~~l~~al~~--~~gP~~irl 519 (661)
T PTZ00089 481 ALL-RATPNLLVIRPADGTETSGAYALALAN--AKTPTILCL 519 (661)
T ss_pred HHH-hcCCCcEEEecCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 331 13565544 335788899999888852 379998865
|
|
| >cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins | Back alignment and domain information |
|---|
Probab=90.58 E-value=1.8 Score=38.27 Aligned_cols=98 Identities=21% Similarity=0.159 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHH-HHHHHC--------CCCeEEEEecCCcccccccccccCCch
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALW--------DLPAILVCENNHYGMGTAEWRAAKSPS 246 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Eal-n~Aa~~--------~LPvI~Vv~NN~~~i~~~~~~~~~~~~ 246 (348)
+++|.|+|+. +.++|+.+.=+.+.. ..+|-+ +-++.+ ++|+++++..-+++...+. . ...+
T Consensus 57 vg~AaGlA~~------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~t--h-s~~~ 126 (167)
T cd07036 57 VGLAVGAAMN------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQ--H-SQSL 126 (167)
T ss_pred HHHHHHHHHc------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChh--h-hhhH
Confidence 4556666653 344554333334433 234444 434433 6999999865555422222 1 1223
Q ss_pred HHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018967 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (348)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (348)
..-. -.+|++.| .=.|+.+....++.++++ ++|+++-
T Consensus 127 ~a~l-r~iPg~~V~~Psd~~e~~~~l~~~~~~---~~P~~~~ 164 (167)
T cd07036 127 EAWF-AHIPGLKVVAPSTPYDAKGLLKAAIRD---DDPVIFL 164 (167)
T ss_pred HHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 2211 23566544 446888999999988864 8998863
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain |
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=90.11 E-value=2.9 Score=44.01 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh--hcCCc
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~--~g~gi 254 (348)
-+|.|.|.+ .+.-.++++..|=|.+|. .-++..|-..+.|+|+|+-+-........ .....|... +..--
T Consensus 57 ~mAdgyar~---tg~~gv~~~t~GPG~~N~---l~gla~A~~~~~Pvl~ItG~~~~~~~~~~--~~q~~d~~~l~~~itk 128 (576)
T PRK08611 57 LAAAAYAKL---TGKIGVCLSIGGPGAIHL---LNGLYDAKMDHVPVLALAGQVTSDLLGTD--FFQEVNLEKMFEDVAV 128 (576)
T ss_pred HHHHHHHHH---hCCceEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccccCCC--CccccCHHHHhhcccc
Confidence 345565543 345567777789999883 34577788889999999865443211110 011112221 11111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
-..+| +++..+.+++.+|+..+.+ .||+.|++-
T Consensus 129 ~~~~v--~~~~~~~~~l~~A~~~A~~~~GPV~l~iP 162 (576)
T PRK08611 129 YNHQI--MSAENLPEIVNQAIRTAYEKKGVAVLTIP 162 (576)
T ss_pred eeEEe--CCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 12445 3688888888888877777 899999985
|
|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.89 E-value=2.7 Score=44.77 Aligned_cols=109 Identities=12% Similarity=0.179 Sum_probs=63.4
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHH-HHHHHCCCCeEEEEecCCcccccccccccCCch
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Eal-n~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~ 246 (348)
.|+-.++ +++|+|+|+. .-++++++ -+.|-+ ..+|-+ +.++..++||+|++...++. +..........|
T Consensus 357 ~GIaEq~~vg~AaGlA~~-----G~~Pvv~~--~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~~-g~dG~tH~~~~d 427 (617)
T TIGR00204 357 VAIAEQHAVTFAAGMAIE-----GYKPFVAI--YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGIV-GADGETHQGAFD 427 (617)
T ss_pred CCccHHHHHHHHHHHHHC-----CCEEEEEe--cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCcC-CCCCcccccchH
Confidence 4444444 3567777652 23444444 456655 344444 66789999999999877763 211111112233
Q ss_pred HHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018967 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (348)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (348)
+.-. -.+|+++| .=.|+.++..+++.|++. .++|++|-..
T Consensus 428 ia~l-r~iPgl~V~~Psd~~e~~~~l~~a~~~--~~~Pv~ir~~ 468 (617)
T TIGR00204 428 ISYL-RCIPNMVIMAPSDENELRQMLYTGYHY--DDGPIAVRYP 468 (617)
T ss_pred HHHH-hcCCCcEEEeeCCHHHHHHHHHHHHhC--CCCCEEEEEc
Confidence 3221 24666654 345788899999988863 2599988543
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 | Back alignment and domain information |
|---|
Probab=89.77 E-value=4.4 Score=35.79 Aligned_cols=114 Identities=21% Similarity=0.231 Sum_probs=61.2
Q ss_pred Cccccch-hHHHHHHHHHHHhCCC-CcEEEEEeCCccc-cchhHHHHHH-HHHHCCCCeEEEEecCCcccccccccccCC
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKD-ETVTFALYGDGAA-NQGQLFEALN-IAALWDLPAILVCENNHYGMGTAEWRAAKS 244 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~-~~~vv~~~GDGa~-~~G~~~Ealn-~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~ 244 (348)
.|+-.++ +++|+|+|++ ++ ..+++..++|=.. .|-..++.+. ....+++|+. |+..-+++.+.........
T Consensus 53 ~gIaE~~~vg~a~GlA~~----G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~ 127 (178)
T PF02779_consen 53 TGIAEQNMVGMAAGLALA----GGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSI 127 (178)
T ss_dssp --S-HHHHHHHHHHHHHH----SSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSS
T ss_pred cCcchhhccceeeeeeec----ccccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCccccccccccccc
Confidence 3444433 4677777765 22 3344455554333 0133455555 7788899998 6655555433222222222
Q ss_pred chHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018967 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (348)
Q Consensus 245 ~~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (348)
.+..-. -.+|+++| .=.|+.++..+++.|++. ..++|++|-..
T Consensus 128 ~d~~~~-~~iPg~~v~~Psd~~e~~~~l~~a~~~-~~~~P~~ir~~ 171 (178)
T PF02779_consen 128 EDEAIL-RSIPGMKVVVPSDPAEAKGLLRAAIRR-ESDGPVYIREP 171 (178)
T ss_dssp SHHHHH-HTSTTEEEEE-SSHHHHHHHHHHHHHS-SSSSEEEEEEE
T ss_pred cccccc-ccccccccccCCCHHHHHHHHHHHHHh-CCCCeEEEEee
Confidence 333221 13666544 446899999999999973 12799988653
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B .... |
| >TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=89.70 E-value=2.4 Score=44.63 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=70.6
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH-Hhh-c
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY-YKR-G 251 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~-~~~-g 251 (348)
+.+.+++|+++| +..+++.+--.+++ ...|.+.+|+-..+|+|+++.|-. +.++.........|+ ..+ +
T Consensus 248 aA~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~D~~~~~~~ 318 (562)
T TIGR03710 248 AAINMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQSDLLFALYG 318 (562)
T ss_pred HHHHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHHHHHHHhcC
Confidence 345667777776 33455555444444 468999999999999776665543 222211111111222 222 2
Q ss_pred -CC-cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018967 252 -DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (348)
Q Consensus 252 -~g-ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (348)
.| .|-+.+.-.|+.+++..+.+|.+.+.+ .-|+++-...|.
T Consensus 319 ~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 319 GHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred CCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 22 444666778999999999999988877 899999999885
|
The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions. |
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.67 E-value=3.5 Score=42.88 Aligned_cols=106 Identities=19% Similarity=0.160 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcC
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGD 252 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~ 252 (348)
.-+|-|.|.. .+.-.++++..|=|.+|. .-++.-|...+.|+|+++-.... ..+..........|... +.+
T Consensus 52 ~~mAdgyar~---tg~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~ 125 (535)
T PRK07524 52 GFMADGYARV---SGKPGVCFIITGPGMTNI---ATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGV 125 (535)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhh
Confidence 3345555533 344467777889999873 45677888899999988854432 11110000000012111 111
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
--...+| ++++.+.+.+.+|+..+++ .||++|++-
T Consensus 126 tk~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 126 AAFSHTL--MSAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred ceeEEEe--CCHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 1222455 4788999999999988876 699999885
|
|
| >PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains | Back alignment and domain information |
|---|
Probab=89.46 E-value=1.7 Score=40.49 Aligned_cols=111 Identities=18% Similarity=0.136 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh-hcC
Q 018967 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK-RGD 252 (348)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~-~g~ 252 (348)
.+.+++|++++ +..+++..--.+++ ...|.|.+++-.++|+++++.|-.- +-+.+. .....|+.. +-+
T Consensus 48 A~~~~~GAs~a------G~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~--~~~q~D~~~~~d~ 117 (230)
T PF01855_consen 48 AMEAAIGASAA------GARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLST--QPEQDDLMAARDS 117 (230)
T ss_dssp HHHHHHHHHHT------T--EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB----SB-SHHHHHTTTS
T ss_pred HHHHHHHHHhc------CCceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcC--cCChhHHHHHHhc
Confidence 35566777765 33344444333333 3567899999999998877765432 111111 111223332 435
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~ 298 (348)
+.+ .+.-.|+.+.++....|.+.+.+ .-|+++-...++. .|+.
T Consensus 118 ~~~--vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 118 GWI--VLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp S-E--EEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred CeE--EEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 553 44556888999888889888878 9999999998875 3554
|
This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B .... |
| >PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed | Back alignment and domain information |
|---|
Probab=89.40 E-value=2.5 Score=42.33 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=71.8
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccccccCCchHHhh-c
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYKR-G 251 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~~~~~~~~~~~-g 251 (348)
+.+.+++|+++| +..+++.+.-+++. -..|.+.+|+-..+|+++++.+-. -+.+.+.........+... +
T Consensus 58 aA~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~~~~~~~~ 129 (375)
T PRK09627 58 SGISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDVNQAKNPT 129 (375)
T ss_pred HHHHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccchHHHHHHhcCC
Confidence 345667777776 33455555444443 257999999999999887665532 2222222211111122222 2
Q ss_pred CC-cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018967 252 DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 252 ~g-ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~ 298 (348)
+| .+-+.+.-.|+.+++....+|.+.+.+ .-|++|-..+ + -+|+.
T Consensus 130 hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~-lsh~~ 176 (375)
T PRK09627 130 HGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-T-VGHMY 176 (375)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-H-HhCCe
Confidence 32 444566778999999999999888877 8899999888 3 37765
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.38 E-value=3.4 Score=43.17 Aligned_cols=102 Identities=14% Similarity=0.099 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~gi 254 (348)
+|.|.|.+ .++-.+|++..|=|.+| ..-++..|-.-+.|+|+++-.-... +... ...+.|.... .+-.
T Consensus 54 mAdgyar~---tgkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~l~~~vtk 124 (549)
T PRK06457 54 AASVEAKI---TGKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIGHD---YFQEVNLTKLFDDVAV 124 (549)
T ss_pred HHHHHHHH---hCCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccCCC---cccccchhhhhcccee
Confidence 45565543 34456677778999988 3456778888899999998643321 1110 0001122111 1111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (348)
...+| .++..+.+.+++|+..+.. .||+.|++-.
T Consensus 125 ~~~~v--~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 159 (549)
T PRK06457 125 FNQIL--INPENAEYIIRRAIREAISKRGVAHINLPV 159 (549)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHHhcCCCCEEEEeCH
Confidence 12344 4678888888888877767 8999999863
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.05 E-value=3.1 Score=43.42 Aligned_cols=103 Identities=21% Similarity=0.169 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|.|.|.+ .+.-.++++..|=|.+| ..-++..|..-+.|+|+++-.-.. ..+.. . ....|... +.+-
T Consensus 52 ~~Adgyar~---sg~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-~--~q~~d~~~~~~~~t 122 (548)
T PRK08978 52 MAAIGYARA---TGKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGTD-A--FQEIDVLGLSLACT 122 (548)
T ss_pred HHHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCC-C--CcccchhccccCce
Confidence 345565544 34556777788999987 345677788899999998754332 11110 0 00111111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+|+ +++++...+++|+..++. .||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 123 KHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred eeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 2235664 788888899999888776 4999999863
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=88.85 E-value=3.5 Score=43.27 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|-|.|.+ .++-.++++..|=|.+|- .-++..|...+.|+|+|+-.-... .+. ......|... +.+-.
T Consensus 57 mAdgYar~---tg~~gv~~~t~GPG~~n~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~l~~~~tk 127 (574)
T PRK07979 57 MADGLARA---TGEVGVVLVTSGPGATNA---ITGIATAYMDSIPLVVLSGQVATSLIGY---DAFQECDMVGISRPVVK 127 (574)
T ss_pred HHHHHHHH---hCCceEEEECCCccHhhh---HHHHHHHhhcCCCEEEEECCCChhccCC---CCCceecHHHHhhcccc
Confidence 45565543 344567888889998872 345777888899999998543321 111 0111112222 11112
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+| ++++++...+++|+..+.. .||++|++-.
T Consensus 128 ~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~ 163 (574)
T PRK07979 128 HSFLV--KQTEDIPQVLKKAFWLAASGRPGPVVVDLPK 163 (574)
T ss_pred eEEEe--CCHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 23456 3788999999999988877 5999999864
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=88.76 E-value=3.9 Score=42.74 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh--hcCCcc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVP 255 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~--~g~gip 255 (348)
+|-|.|.+ .+.-.++++..|=|.+|. .-++..|..-+.|+|+|+-.................|... +..--.
T Consensus 55 mAdgyar~---tg~~gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~ 128 (554)
T TIGR03254 55 AAAAAGFL---TQKPGVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKA 128 (554)
T ss_pred HHHHHHHH---hCCCEEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhhee
Confidence 45555544 344567777789999883 3457788889999999986544321000000011112211 111122
Q ss_pred eEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 256 g~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
..+|+ ++.++.+.+.+|+..+.+ .||+.|++-.
T Consensus 129 ~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~ 163 (554)
T TIGR03254 129 AYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLPA 163 (554)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 35664 688888888888877766 5899999863
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=88.59 E-value=3.6 Score=43.33 Aligned_cols=103 Identities=20% Similarity=0.192 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|-|.|.. .++-.++++..|=|.+|. .-++.-|-..+.|+|+|+-.-... ... ......|.... .+-
T Consensus 66 ~mAdgyar~---tg~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~it 136 (570)
T PRK06725 66 HAAEGYARA---SGKVGVVFATSGPGATNL---VTGLADAYMDSIPLVVITGQVATPLIGK---DGFQEADVVGITVPVT 136 (570)
T ss_pred HHHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHhhcCcCEEEEecCCCcccccC---CCCcccchhhhhhccc
Confidence 345566543 344567777789998872 345777778899999988533321 111 00111122211 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+|+ +++.+.+.+++|+..+++ .||+.|++-.
T Consensus 137 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 137 KHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 2224563 788999999999988877 5999999853
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=88.23 E-value=4.1 Score=43.19 Aligned_cols=103 Identities=21% Similarity=0.202 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|.|.|.+ .+.-.++++..|=|.+|. .-++.-|..-+.|+|+|+-.-... +.. ......|.... .+-
T Consensus 83 ~~Adgyar~---tg~~gv~~~t~GPG~~N~---l~gl~~A~~~~~PllvI~G~~~~~~~~~---~~~q~~d~~~l~~~~t 153 (612)
T PRK07789 83 HAAEGYAQA---TGRVGVCMATSGPGATNL---VTPIADANMDSVPVVAITGQVGRGLIGT---DAFQEADIVGITMPIT 153 (612)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CcCcccchhhhhhcce
Confidence 345555543 344566777789998873 345777788899999998543321 111 00111122111 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+| +++..+.+.+.+|+..+++ .||++|++-.
T Consensus 154 k~s~~v--~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 190 (612)
T PRK07789 154 KHNFLV--TDADDIPRVIAEAFHIASTGRPGPVLVDIPK 190 (612)
T ss_pred eEEEEc--CCHHHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence 112455 3788888999999887776 5899999863
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=88.20 E-value=4 Score=42.15 Aligned_cols=103 Identities=16% Similarity=-0.024 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|-|.|.. .+.-.++++..|=|.+| ..-++..|..-+.|+|+|+-+-... .... .....|.... .+-
T Consensus 53 ~mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~~~~~vt 123 (514)
T PRK07586 53 GAADGYARM---AGKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRKYD---APLTSDIEALARPVS 123 (514)
T ss_pred HHHHHHHHH---HCCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccCCC---cccccchhhhhcccc
Confidence 345555543 34446677788999886 2334667888899999998653321 1110 0001122221 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+| .++.++.+.+.+|+..+.+ .||++|++-.
T Consensus 124 k~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 124 GWVRRS--ESAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred ceeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 112345 3688888888888888776 5999999864
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=88.15 E-value=4.2 Score=42.71 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh--hcCCcc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVP 255 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~--~g~gip 255 (348)
+|-|.|.. .+.-.++++..|=|.+| ..-++..|-.-+.|+|+|+-.-....... ......|... +.+--.
T Consensus 57 mAdgyar~---tg~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~itk~ 128 (574)
T PRK06466 57 MADGYARA---TGKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDMVGISRPIVKH 128 (574)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccchhhhhhcccee
Confidence 45566543 34456777888999988 34567778888999999985443311000 0011112211 111122
Q ss_pred eEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 256 g~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
..+|+ ++.++.+.+++|+..+.+ .||+.|++-.
T Consensus 129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06466 129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPK 163 (574)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 24554 688889999999888776 5999999854
|
|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.11 E-value=4.7 Score=41.95 Aligned_cols=104 Identities=18% Similarity=0.120 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccC-CchHHh--hcCC
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAK-SPSYYK--RGDY 253 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~-~~~~~~--~g~g 253 (348)
+|.|.|.. .+.-.++++..|=|.+|. .-++.-|..-+.|+|+++-.=.. .+.... .+.. ..|... +.+-
T Consensus 58 ~A~gyar~---tg~~~v~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-~~~~~~~d~~~~~~~~t 130 (542)
T PRK08266 58 MAFGYARS---TGRPGVCSVVPGPGVLNA---GAALLTAYGCNSPVLCLTGQIPSALIGKGR-GHLHEMPDQLATLRSFT 130 (542)
T ss_pred HHHHHHHH---hCCCeEEEECCCCcHHHH---HHHHHHHHhhCCCEEEEecCCChhhccCCC-CcceecccHhhHHhhhc
Confidence 56666544 233456677779999873 45577788899999999853221 111100 0000 012111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+|+ ++.++.+.+++|+..+.. .||+.|++-.
T Consensus 131 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~ 167 (542)
T PRK08266 131 KWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPW 167 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCH
Confidence 2234564 678888888888877766 6999999864
|
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=87.89 E-value=3.8 Score=44.12 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=69.0
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +.+|.|+|+- +.-.+.++.+ ..|.+ ..++++.+++..++||++|....+++.+.......+-.|+
T Consensus 407 ~GIaE~~Mv~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdl 479 (663)
T PRK12754 407 YGVREFGMTAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQV 479 (663)
T ss_pred eccchhhHHHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHH
Confidence 4444444 3666777752 1123333333 35655 7899999999999999999988887665432222233344
Q ss_pred Hh-hcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YK-RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~-~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+- |+ +|++.| .=-|..++.++++.|+++ .+||+.|-+
T Consensus 480 a~lR~--iPn~~V~~PaD~~E~~~~~~~a~~~--~~gP~yirl 518 (663)
T PRK12754 480 ASLRV--TPNMSTWRPCDQVESAVAWKYGVER--QDGPTALIL 518 (663)
T ss_pred HHHhc--CCCcEEecCCCHHHHHHHHHHHHhC--CCCCEEEEe
Confidence 43 33 555543 445788899999988863 379997654
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.85 E-value=4.8 Score=41.83 Aligned_cols=105 Identities=19% Similarity=0.112 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccccccCCchHHhh--cCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYKR--GDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~~~~~~~~~~~--g~gi 254 (348)
+|.|.|.+ .++-.++++..|=|.+| ..-++..|-.-+.|+|+++-+-. ..+...........|.... .+--
T Consensus 56 ~A~gyar~---tg~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk 129 (544)
T PRK07064 56 MADAHARV---SGGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSK 129 (544)
T ss_pred HHHHHHHh---cCCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcc
Confidence 45566543 34446777778999988 34567778889999999986422 1111100000001122111 1111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+| +++.++.+++.+|+..+.. .||+.|++-.
T Consensus 130 ~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 130 AAFRV--RSAETALATIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred eEEEe--CCHHHHHHHHHHHHHHhccCCCCcEEEEeCH
Confidence 23456 3688888888888877765 6999999863
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.79 E-value=4.2 Score=42.63 Aligned_cols=103 Identities=22% Similarity=0.132 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|.|.|.. .+.-.++++..|=|.+| ..-++..|-..+.|+|++.-.-... .... .....|... +.+-
T Consensus 57 ~~Adgyar~---tg~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~i~~~~t 127 (572)
T PRK06456 57 HAADGYARA---SGVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMGKM---AFQEADAMGVFENVT 127 (572)
T ss_pred HHHHHHHHh---hCCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccCCC---Cccccchhhhhhccc
Confidence 345565543 34445666678999988 2445777888899999987543321 1110 000111111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+| ++++++.+++.+|+..+++ .||+.|++-.
T Consensus 128 k~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 164 (572)
T PRK06456 128 KYVIGI--KRIDEIPQWIKNAFYIATTGRPGPVVIDIPR 164 (572)
T ss_pred eeEEEe--CCHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 122455 4788888888888887776 5999999853
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=87.76 E-value=5.7 Score=41.87 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|.|.|.+ .+.-.++++..|=|++| ..-++..|-..+.|+|+|+-.-.. .+... ..+ ..|... +.+-
T Consensus 57 ~~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q--~~d~~~l~~~~t 127 (588)
T PRK07525 57 HMADGYTRV---TGRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIGQG-GFQ--EAEQMPMFEDMT 127 (588)
T ss_pred HHHHHHHHH---hCCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCCCC-CCc--ccchhhhhhhhe
Confidence 345555543 23446777778999987 344577788889999999832111 11100 000 111111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
-...+| .++..+.+.+.+|+..++. .||+.|++-
T Consensus 128 k~~~~i--~~~~~~~~~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 128 KYQEEV--RDPSRMAEVLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred eEEEEC--CCHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 112445 4788888888888888877 899999985
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=87.44 E-value=4.1 Score=43.77 Aligned_cols=110 Identities=22% Similarity=0.216 Sum_probs=65.5
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.+. +.+|.|+|+. +.-.++++.+ ..+.+ ..++++.+++..++||++|....+++.+.......+-.++
T Consensus 401 ~GIaEq~mv~~AaGlA~~----gG~~p~~~tf--~~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedi 473 (653)
T TIGR00232 401 YGVREFAMGAIMNGIALH----GGFKPYGGTF--LMFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQL 473 (653)
T ss_pred ecccHHHHHHHHHHHHHc----CCCeEEEEEh--HHHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHH
Confidence 4544443 3566666652 1123333333 35554 6678899999999999999988777654322222222343
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+-. -.+|++.| .=-|..++..+++.|++. .++|++|-+
T Consensus 474 a~l-r~iPn~~v~~PaD~~E~~~~~~~a~~~--~~gP~~irl 512 (653)
T TIGR00232 474 ASL-RAIPNLSVWRPCDGNETAAAWKYALES--QDGPTALIL 512 (653)
T ss_pred HHH-hcCCCCEEEeeCCHHHHHHHHHHHHhc--CCCcEEEEE
Confidence 321 13555433 335788899999988842 389998854
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=87.35 E-value=5.3 Score=42.17 Aligned_cols=103 Identities=12% Similarity=0.120 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhC-CCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcC
Q 018967 177 PLGCGLAFAQKYS-KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (348)
Q Consensus 177 p~A~G~A~A~k~~-~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~ 252 (348)
-+|.|.|.+ . ++-.++++..|=|.+|. .-++..|..-+.|+|+++-+-... .... .....|... +.+
T Consensus 56 ~mAdGYar~---t~g~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~~d~~~l~~~i 126 (591)
T PRK11269 56 HMAEGYTRA---TAGNIGVCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHKE---DFQAVDIESIAKPV 126 (591)
T ss_pred HHHHHHHHH---cCCCcEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC---cccccChhhHhhcc
Confidence 345555543 3 34456777779988872 345777788899999998654431 1110 011112211 111
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-....+| .+++++...+++|+..+++ .||+.|++-.
T Consensus 127 tk~s~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 127 TKWAVTV--REPALVPRVFQQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred eeEEEEc--CCHHHHHHHHHHHHHHHhhCCCCeEEEEeCh
Confidence 1112455 4788888999999888876 5899999863
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.34 E-value=4.9 Score=42.19 Aligned_cols=104 Identities=21% Similarity=0.188 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cC
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~ 252 (348)
.-+|.|.|.+ .++-.++++..|=|.+| ..-++.-|-.-+.|+|++.-.-... +... ..+ ..|.... .+
T Consensus 66 ~~~A~gyar~---tg~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~-~~q--~~d~~~l~~~~ 136 (571)
T PRK07710 66 IHAAEGYARI---SGKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGSD-AFQ--EADIMGITMPV 136 (571)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCCC-Ccc--ccchhhhhhcc
Confidence 3455666544 24445677777999887 3445777788899999987544321 1110 001 1111111 11
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-....+| .+++++.+.+++|+..++. .||+.|++-.
T Consensus 137 tk~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 137 TKHNYQV--RKASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred cceEEec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 1112344 4788888889998887776 5999999864
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.27 E-value=5.5 Score=42.27 Aligned_cols=102 Identities=20% Similarity=0.231 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|.|.|.. .++-.++++..|=|++|. .-++--|..-+.|+|+++-+-.. .+.+. .+.+.|.... ..-
T Consensus 74 ~aA~gyar~---tgk~gv~~~t~GPG~~n~---l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~---~~Qe~d~~~~~~~vt 144 (616)
T PRK07418 74 HAADGYARA---TGKVGVCFGTSGPGATNL---VTGIATAQMDSVPMVVITGQVPRPAIGTD---AFQETDIFGITLPIV 144 (616)
T ss_pred HHHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCC---CcccccHHHHhhhcc
Confidence 345555543 344556777779999873 44577888899999998754322 11110 0111122111 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
-...+|+ +++++.+++.+|+..+.+ .||++|++-
T Consensus 145 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 145 KHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecc
Confidence 1124554 788899999999888876 499999875
|
|
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.21 E-value=4.7 Score=43.26 Aligned_cols=110 Identities=22% Similarity=0.292 Sum_probs=64.4
Q ss_pred CCccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHH-HHHHHCCCCeEEEEecCCcccccccccccCCc
Q 018967 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (348)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Eal-n~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~ 245 (348)
..|+-.+. +++|.|+|+. .-+++++++. .|.+ ..++.+ +.++..++|++||+...++. +..........
T Consensus 365 d~GIaE~~mvg~AaGlA~~-----G~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~-g~dG~THq~~~ 435 (641)
T PRK12571 365 DVGIAEQHAVTFAAGLAAA-----GLKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLV-GADGATHAGAF 435 (641)
T ss_pred ccCccHHHHHHHHHHHHHC-----CCEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCcC-CCCCccccccH
Confidence 34555544 3567777752 2344555543 4555 456655 66889999999998666552 11111111222
Q ss_pred hHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018967 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (348)
Q Consensus 246 ~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (348)
|++-. -.+|++.| -=.|+.+++.+++.|+++ .++|++|-..
T Consensus 436 dia~l-r~iPnl~V~~Psd~~e~~~~l~~a~~~--~~~P~~ir~~ 477 (641)
T PRK12571 436 DLAFL-TNLPNMTVMAPRDEAELRHMLRTAAAH--DDGPIAVRFP 477 (641)
T ss_pred HHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCcEEEEEe
Confidence 33321 13666544 345788999999998862 3799998654
|
|
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=87.17 E-value=4.5 Score=43.57 Aligned_cols=110 Identities=21% Similarity=0.220 Sum_probs=69.8
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +.+|.|+|+- +.-.++++.+ +.|.+ ..++.+.+++..++||+||....+++.+.......+..|+
T Consensus 407 ~GIaEq~mv~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedl 479 (663)
T PRK12753 407 YGVREFGMTAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQL 479 (663)
T ss_pred eeecHHHHHHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHH
Confidence 4444443 4667777752 1223444444 36665 7899999999999999999998888764432222233344
Q ss_pred Hh-hcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018967 248 YK-RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (348)
Q Consensus 248 ~~-~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (348)
+- | .+|.+.| .=-|..++..+++.|++. .++|+.|-+.
T Consensus 480 a~lR--~iPn~~v~~PaD~~E~~~~~~~al~~--~~gP~~irl~ 519 (663)
T PRK12753 480 ASLR--LTPNFSTWRPCDQVEAAVAWKLAIER--HNGPTALILS 519 (663)
T ss_pred HHHh--cCCCCEEEccCCHHHHHHHHHHHHhc--CCCCEEEEec
Confidence 33 3 3555433 334788889999988862 2799887653
|
|
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=87.00 E-value=3.9 Score=40.77 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=61.4
Q ss_pred ccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccc-hhHHHHHHHHHHCCCCeEEEEecCCc-ccc-cccccccC--Cch
Q 018967 172 VGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ-GQLFEALNIAALWDLPAILVCENNHY-GMG-TAEWRAAK--SPS 246 (348)
Q Consensus 172 lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~-G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~-~~~~~~~~--~~~ 246 (348)
=|.++++|.|+.+| .+++.+++.=.-+++. =...-+|+-...+++|++++|---+. +.- .|+..... .+.
T Consensus 35 E~~av~iaaG~~la-----tG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~~t~~ 109 (361)
T TIGR03297 35 EGAAVGLAAGAYLA-----TGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRITLS 109 (361)
T ss_pred chHHHHHHHHHHHh-----cCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhHHHHH
Confidence 46778888888877 2344444432222211 00122222245689999988854443 321 12111000 011
Q ss_pred HHhhcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 247 YYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 247 ~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
+- ...++|...++ .|.++..+++..|.+++.+ ++|+.|-+.
T Consensus 110 lL-~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 110 LL-DALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HH-HHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 11 24789988885 3556777778888877777 899876554
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=86.91 E-value=5.4 Score=41.48 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhh--cCCc
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gi 254 (348)
-+|.|.|.+ .+.-.++++..|=|.+|. .-++.-|-.-+.|+|+++-+-........ .....|.... .+--
T Consensus 52 ~~A~gyar~---tg~~gv~~~t~GpG~~N~---~~~i~~A~~~~~Pll~i~g~~~~~~~~~~--~~q~~d~~~~~~~~tk 123 (547)
T PRK08322 52 FMAATYGRL---TGKAGVCLSTLGPGATNL---VTGVAYAQLGGMPMVAITGQKPIKRSKQG--SFQIVDVVAMMAPLTK 123 (547)
T ss_pred HHHHHHHHh---hCCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEeccccccccCCC--ccccccHHHHhhhhee
Confidence 345555543 344556777778998873 44577788889999998854322110000 0111122111 1111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+| ++++.+.+.+.+|+..+.+ .||++|++-.
T Consensus 124 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 124 WTRQI--VSPDNIPEVVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 12455 4788888888888888777 5899999863
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=86.91 E-value=6 Score=41.33 Aligned_cols=102 Identities=21% Similarity=0.210 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|.|.|.. .+.-.++++..|=|.+| ..-++.-|-.-+.|+|+|+-.-.. .... ......|... +.+-
T Consensus 53 ~~Adgyar~---tg~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~~---~~~q~~d~~~~~~~~t 123 (558)
T TIGR00118 53 HAADGYARA---SGKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIGS---DAFQEADILGITMPIT 123 (558)
T ss_pred HHHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC---CCCcccChhhhhcCcc
Confidence 345565543 34455777788999887 345677788889999998753221 1110 0000111111 1122
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
....+|+ ++.++.+.+.+|+..+.. .||+.|++-
T Consensus 124 k~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 124 KHSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 2234563 688888888888877766 589999985
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=86.86 E-value=7.4 Score=39.17 Aligned_cols=112 Identities=16% Similarity=0.097 Sum_probs=70.6
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh-hcC
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGD 252 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~-~g~ 252 (348)
+.+.+++|+++| +..+.+.+--.+++ ..+|.+.+|+-..+|+|+++.|-.-. ++........|+.. +.-
T Consensus 60 aA~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~~~~d~ 129 (390)
T PRK08366 60 SAMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSLAQRDT 129 (390)
T ss_pred HHHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHHHHhhc
Confidence 346678888876 34455555555554 36899999999999988776643322 22222111223222 222
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~ 298 (348)
|. +..-..|+.+.+.-...|.+.+.+ .-|+++-...|+.. |..
T Consensus 130 g~--i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~ 173 (390)
T PRK08366 130 GW--MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTY 173 (390)
T ss_pred CE--EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-ccc
Confidence 22 233346888888888888888777 89999999888754 443
|
|
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=86.85 E-value=4.7 Score=43.21 Aligned_cols=112 Identities=15% Similarity=0.119 Sum_probs=62.5
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.+. +++|+|+|+. .-+++++++ +.+.+-.+.+-.+.++..++|++|++...++. +..........|+
T Consensus 404 vGIAEq~~Vg~AaGLA~~-----G~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~-g~dG~TH~~~~Di 475 (641)
T PLN02234 404 VGIAEQHAVTFAAGLACE-----GLKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLM-GADGPTHCGAFDV 475 (641)
T ss_pred CCcCHHHHHHHHHHHHHC-----CCeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccC-CCCCccccccHHH
Confidence 4444443 3556666653 234455554 44544333344567789999999999777652 1111111112233
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
.-. -.+|++.| .=.|+.+++.+++.|... .++|++| ...|.
T Consensus 476 a~l-r~iPnl~V~~Psd~~E~~~~l~~a~~~--~~~Pv~i--r~~R~ 517 (641)
T PLN02234 476 TFM-ACLPNMIVMAPSDEAELFNMVATAAAI--DDRPSCF--RYHRG 517 (641)
T ss_pred HHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCCEEE--Eeecc
Confidence 221 14666554 345788888888887752 3689987 44443
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=86.75 E-value=5.4 Score=41.92 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|.|.|.. .+.-.++++..|=|.+| ..-++..|-..+.|+|+|+-.-.. .+... .....|... +.+--
T Consensus 54 ~Adgyar~---tg~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~~~~---~~Q~~d~~~l~~~vtk 124 (579)
T TIGR03457 54 MADGFARV---TGRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTIGLG---GFQEADQLPMFQEFTK 124 (579)
T ss_pred HHHHHHHH---hCCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccCCCC---CCcccchhhhhhccee
Confidence 45555543 34456677777999987 234577788889999988732111 11110 000111111 11111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
...+| .++..+.+.+.+|+..+.. +||++|++-
T Consensus 125 ~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 125 YQGHV--RHPSRMAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred EEEec--CCHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 12345 4688888888888887777 799999985
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.64 E-value=5.4 Score=41.34 Aligned_cols=102 Identities=19% Similarity=0.061 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~gi 254 (348)
+|-|.|.+ .+.-.++++..|=|++|- .-++..|...+.|+|+|+-..... .... .....|.... ..--
T Consensus 58 mAdgYaR~---tg~~gv~~~t~GpG~~N~---~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~~~~~vtk 128 (518)
T PRK12474 58 AADGYGRI---AGKPAVTLLHLGPGLANG---LANLHNARRAASPIVNIVGDHAVEHLQYD---APLTSDIDGFARPVSR 128 (518)
T ss_pred HHHHHHHH---hCCCEEEEEccchhHhHh---HHHHHHHhhcCCCEEEEeccCchhhcCCC---CccccCHHHhhhcccc
Confidence 45555543 345567778889998872 344667788899999998543321 1110 0001122221 1111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+| .+++++.+++++|+..+.+ .||++|++-.
T Consensus 129 ~~~~v--~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~ 164 (518)
T PRK12474 129 WVHRS--ASAGAVDSDVARAVQAAQSAPGGIATLIMPA 164 (518)
T ss_pred eeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 12344 4788888899999877766 5899999864
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=86.59 E-value=5.4 Score=41.80 Aligned_cols=102 Identities=23% Similarity=0.197 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|.|.|.+. +.-.++++..|=|.+|- .-++.-|...+.|+|++.-.-... .... .....|.... .+-
T Consensus 65 ~~Adgyar~t---g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~~~~~~t 135 (564)
T PRK08155 65 FIAQGMARTT---GKPAVCMACSGPGATNL---VTAIADARLDSIPLVCITGQVPASMIGTD---AFQEVDTYGISIPIT 135 (564)
T ss_pred HHHHHHHHHc---CCCeEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeccCCcccccCC---Cccccchhhhhhccc
Confidence 3466666542 34456666778998873 345777888999999997543321 1110 0001121111 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
-...+| +++.++...+.+|+..++. .||+.|++-
T Consensus 136 k~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 136 KHNYLV--RDIEELPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred eEEEEc--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 112455 3788899999999888766 599999985
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=86.55 E-value=5.1 Score=42.42 Aligned_cols=104 Identities=16% Similarity=0.097 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhh--cCCc
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gi 254 (348)
-+|-|.|.. .+.-.++++..|=|.+|. .-++..|-..+.|+|++.-.-...... .......|.... .+--
T Consensus 63 ~mAdgyar~---tg~~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk 134 (595)
T PRK09107 63 HAAEGYARS---TGKPGVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHLIG--SDAFQECDTVGITRPCTK 134 (595)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhhcC--CCCCcccchhhhhhhheE
Confidence 345555543 344567777789999873 345777788899999987544321100 001111121111 1111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+| ++++++.+.+.+|+..+++ .||+.|++-.
T Consensus 135 ~~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 170 (595)
T PRK09107 135 HNWLV--KDVNDLARVIHEAFHVATSGRPGPVVVDIPK 170 (595)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHhcCCCCceEEEecCC
Confidence 12455 4788999999999988887 5899998853
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=86.51 E-value=5.5 Score=41.98 Aligned_cols=103 Identities=25% Similarity=0.228 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|.|.|.+ .++-.++++..|=|.+| ..-++..|-.-+.|+|+|.-.-... +.. ......|... +.+-
T Consensus 65 ~~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~~t 135 (585)
T PLN02470 65 FAAEGYAKA---SGKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMIGT---DAFQETPIVEVTRSIT 135 (585)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhcCC---CcCcccchhhhhhhhe
Confidence 346666654 34456777888999987 3445777888899999997543321 111 0011111111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+| +++.++.+.+.+|+..+.+ .||+.|++-.
T Consensus 136 k~~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 172 (585)
T PLN02470 136 KHNYLV--MDVEDIPRVIREAFFLASSGRPGPVLVDIPK 172 (585)
T ss_pred EEEEEc--CCHHHHHHHHHHHHHHhcCCCCCeEEEEecC
Confidence 112455 4788999999999988877 5999999863
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=86.43 E-value=7.2 Score=40.93 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCccc-ccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i-~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|-|.+.+ .+.-.++++..|=|.+|. .-++..|..-+.|+|+|+-.-.... ... .......|... +.+--
T Consensus 62 mAdgyar~---tg~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-~~~~q~~d~~~~~~~~tk 134 (569)
T PRK09259 62 AAAAAGFL---TQKPGVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDLQ-QGDYEELDQLNAAKPFCK 134 (569)
T ss_pred HHHHHHHH---hCCCEEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCccccccc-CCCccccchhhhhhhhee
Confidence 34555543 334456777779999873 3457788889999999985433211 000 00011112211 11111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
...+|+ ++.++.+.+.+|+..+.. .||+.|++-
T Consensus 135 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 135 AAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred eeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 224553 688888888888887766 689999986
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=86.23 E-value=5.7 Score=41.42 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|.|.|. ..++-.++++..|=|.+|- .-++..|..-+.|+|++.-.... .+... .....|... +.+--
T Consensus 57 ~A~gyar---~tg~~gv~~vt~GpG~~N~---l~gl~~A~~~~~PvlvisG~~~~~~~~~~---~~q~~d~~~l~~~~tk 127 (552)
T PRK08617 57 MAAAIGR---LTGKPGVVLVTSGPGVSNL---ATGLVTATAEGDPVVAIGGQVKRADRLKR---THQSMDNVALFRPITK 127 (552)
T ss_pred HHHhHhh---hcCCCEEEEECCCCcHhHh---HHHHHHHhhcCCCEEEEecCCcccccCCC---Cccccchhhhhhhhcc
Confidence 3445443 3344466777779999883 34577788889999988753222 11110 000111111 11112
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+| ++++++.+.+.+|+..+.+ .||+.|++-.
T Consensus 128 ~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 128 YSAEV--QDPDNLSEVLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred eEEEe--CCHHHHHHHHHHHHHHHccCCCCcEEEeChh
Confidence 22455 4788888899999887766 5899999863
|
|
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=85.93 E-value=5.3 Score=41.15 Aligned_cols=107 Identities=23% Similarity=0.177 Sum_probs=60.3
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEe-CCccccchhHHHHHHHHH--------HCCCCeEEEEecCCccccccc
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALY-GDGAANQGQLFEALNIAA--------LWDLPAILVCENNHYGMGTAE 238 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~-GDGa~~~G~~~Ealn~Aa--------~~~LPvI~Vv~NN~~~i~~~~ 238 (348)
.|+-.++ +++|+|+|++ .-++++.++ .+-.. . .+.+-.|-++ .+++|++|+..|.+..-...
T Consensus 194 ~gIaEq~~vg~AaGlA~~-----G~rPiv~~~~~~f~~-r-a~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~- 265 (464)
T PRK11892 194 TPITEHGFAGIGVGAAFA-----GLKPIVEFMTFNFAM-Q-AIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA- 265 (464)
T ss_pred cCccHHHHHHHHHHHHhC-----CCEEEEEEehHHHHH-H-HHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC-
Confidence 3444333 4667777764 234455454 22221 1 2334456677 88999999988876532111
Q ss_pred ccccCCchHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018967 239 WRAAKSPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (348)
Q Consensus 239 ~~~~~~~~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (348)
+....+. ..--.+|+++| .=.|+.+.+..++.|++ .++|++|--.
T Consensus 266 --hhs~~d~-a~~~~iPgl~V~~P~d~~d~~~ll~~ai~---~~~Pv~ile~ 311 (464)
T PRK11892 266 --QHSQDYA-AWYSHIPGLKVVAPYSAADAKGLLKAAIR---DPNPVIFLEN 311 (464)
T ss_pred --ccccCHH-HHHhhCCCCEEEEeCCHHHHHHHHHHHhh---CCCcEEEEec
Confidence 1112222 21124677654 34578888999988885 3889986433
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=85.93 E-value=6.5 Score=41.55 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=56.1
Q ss_pred CCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh--hcCCcceEEEcCCCHHHHH
Q 018967 191 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVPGLKVDGMDALAVK 268 (348)
Q Consensus 191 ~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~--~g~gipg~~VDG~D~~av~ 268 (348)
.-.++++..|=|++|. .-++.-|...+.|+|+|+-.-........ .....|... +..--...+|. ++.++.
T Consensus 67 ~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~D~~~~~~~vtk~~~~v~--~~~~i~ 139 (588)
T TIGR01504 67 NIGVCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHKE--DFQAVDIAAIAKPVSKMAVTVR--EAALVP 139 (588)
T ss_pred CeEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC--cccccCHHHHhhhhceEEEEcC--CHHHHH
Confidence 3445666678888872 34577788889999999854433211100 011112211 11111124553 788899
Q ss_pred HHHHHHHHHhcc--CCCEEEEEEE
Q 018967 269 QACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 269 ~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
+.+++|+..++. .||++|++-.
T Consensus 140 ~~i~~A~~~A~~~~~GPV~l~iP~ 163 (588)
T TIGR01504 140 RVLQQAFHLMRSGRPGPVLIDLPF 163 (588)
T ss_pred HHHHHHHHHHccCCCCeEEEEeCc
Confidence 999999988776 5899999864
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=85.88 E-value=7.2 Score=41.09 Aligned_cols=103 Identities=19% Similarity=0.132 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|.|.+.+ .+.-.++++..|=|.+|. .-++.-|..-+.|+|+|+-.-.. .... ......|... +..-
T Consensus 52 ~~Adgyar~---tg~~gv~~~t~GPG~~n~---l~~i~~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~~t 122 (586)
T PRK06276 52 HAADGYARA---SGKVGVCVATSGPGATNL---VTGIATAYADSSPVIALTGQVPTKLIGN---DAFQEIDALGIFMPIT 122 (586)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCC---CCCccccHhhHHhhhc
Confidence 445555543 344567777779998873 44577788889999998743221 1110 0000112111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+| +++.++...+.+|+..+.. .||+.|++-.
T Consensus 123 k~s~~v--~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 123 KHNFQI--KKPEEIPEIFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred ceEEec--CCHHHHHHHHHHHHHHhcCCCCCcEEEEcCh
Confidence 222455 3688888889998888776 5899999863
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.75 E-value=6.7 Score=40.87 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc---ccccccccccCCchHHhhcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWRAAKSPSYYKRGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~---~i~~~~~~~~~~~~~~~~g~g 253 (348)
-+|-|.|.+ .+.-.++++..|=|.+|. .-++..|..-+.|+|+|.-+-.. +.+..++. ....+. +.+-
T Consensus 56 ~~AdGyar~---tg~~gv~~~t~GpG~~n~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~--d~~~l~-~~~t 126 (542)
T PRK05858 56 FAAEAWAKL---TRVPGVAVLTAGPGVTNG---MSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEI--DHVPFV-APVT 126 (542)
T ss_pred HHHHHHHHh---cCCCeEEEEcCCchHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCCCCCccc--chhhhh-hhhh
Confidence 345566544 344456666678888873 44577888899999988754332 11111110 001111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+|+ +++.+.+.+.+|+..+.+ .||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (542)
T PRK05858 127 KFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPM 163 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcCh
Confidence 1224553 578888888888877765 6899998853
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=85.71 E-value=6.8 Score=41.26 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc---ccccccccccCCchHHhh--
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWRAAKSPSYYKR-- 250 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~---~i~~~~~~~~~~~~~~~~-- 250 (348)
.-+|-|.| +..++-.+|++..|=|++| ..-.+..|..-..|+|.+.-.=.. +....+ +.|....
T Consensus 52 a~mAdgya---r~TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~~g~~afQ-----e~D~~~l~~ 120 (550)
T COG0028 52 AFAADGYA---RATGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQ-----EVDQVGLFR 120 (550)
T ss_pred HHHHHHHH---HHcCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccccCcchhh-----hcchhhHhh
Confidence 33455555 3456778999999999998 344588888999999988642111 111111 1232221
Q ss_pred cCCcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 251 GDYVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 251 g~gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
.+--....|. +++++-+.+++|...+.+ .||++|++-
T Consensus 121 p~tk~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP 159 (550)
T COG0028 121 PITKYNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLP 159 (550)
T ss_pred hhheeEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 1112224564 788999999999988877 489999884
|
|
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.64 E-value=3 Score=44.21 Aligned_cols=77 Identities=27% Similarity=0.345 Sum_probs=53.4
Q ss_pred HHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh-hc-CCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEE
Q 018967 209 LFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RG-DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMIL 286 (348)
Q Consensus 209 ~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~-~g-~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lI 286 (348)
..-++.+|++.++|++||..-+.++.+.......+...++. |+ .++..++- -|..+...|.+.|+++ +++|++|
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RP--aD~~Et~~aw~~Al~~--~~gPt~L 516 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRP--ADANETAAAWKYALER--KDGPTAL 516 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEec--CChHHHHHHHHHHHhc--CCCCeEE
Confidence 44579999999999999999999987654333333344544 45 34444432 2455788888888873 4999988
Q ss_pred EEE
Q 018967 287 EMD 289 (348)
Q Consensus 287 e~~ 289 (348)
-+.
T Consensus 517 ilt 519 (663)
T COG0021 517 ILT 519 (663)
T ss_pred EEe
Confidence 653
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=85.60 E-value=7.1 Score=40.81 Aligned_cols=102 Identities=18% Similarity=0.110 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|.|.|.+ .++-.++++..|=|.+| ..-++..|-.-+.|+|+|+-.-... .... ...+.|.... .+-
T Consensus 60 ~~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~---~~q~~d~~~l~~~~t 130 (557)
T PRK08199 60 MMAEAYGKL---TGRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFRERE---AFQEIDYRRMFGPMA 130 (557)
T ss_pred HHHHHHHHh---cCCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCC---cccccCHHHhhhhhh
Confidence 345555543 34456677777999987 3445777888899999997532221 1110 0001121110 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
-...+| ++++++.+.+.+|+..+.+ .||+.|++-
T Consensus 131 k~~~~v--~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 131 KWVAEI--DDAARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred ceeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 112445 5788888889888888766 589999885
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=85.49 E-value=8.3 Score=40.12 Aligned_cols=102 Identities=16% Similarity=0.100 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|-|.|. ..++-.++++..|=|.+| ..-++..|..-+.|+|+|+-.-... ... ......|... +.+--
T Consensus 51 ~Adgyar---~tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~~~~~~tk 121 (539)
T TIGR02418 51 MAQAVGR---ITGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLLK---LTHQSMDNVALFRPITK 121 (539)
T ss_pred HHHHHHH---HhCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCccccccc---Ccccccchhhhhhccee
Confidence 4455543 334456777888999987 2345777888899999998643221 110 0011112111 11111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...++ ++++++.+.+.+|+..+.. .||+.|++-.
T Consensus 122 ~~~~i--~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~ 157 (539)
T TIGR02418 122 YSAEV--QDPDALSEVVANAFRAAESGKPGAAFVSLPQ 157 (539)
T ss_pred eeeec--CCHHHHHHHHHHHHHHHhcCCCCCEEEEcCh
Confidence 12344 4788888888888877766 5899999864
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=85.43 E-value=8 Score=40.71 Aligned_cols=103 Identities=18% Similarity=0.128 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|-|.|. ..++-.++++..|=|.+| ..-++..|-..+.|+|+|+-.-.. ..... .....|... +.+-.
T Consensus 53 ~Adgyar---~tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~id~~~~~~~vtk 123 (575)
T TIGR02720 53 AAAADAK---LTGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMNMD---TFQEMNENPIYADVAV 123 (575)
T ss_pred HHHHHHH---hhCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCC---Ccceechhhhhhhcce
Confidence 3445543 344556778888999887 345577788889999999865332 11111 000111111 11111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (348)
...+| .++..+.+.+.+|+..+.+ .||+.|++-..
T Consensus 124 ~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 124 YNRTA--MTAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 11344 3567777777777776666 89999998643
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=85.29 E-value=7.6 Score=40.81 Aligned_cols=102 Identities=18% Similarity=0.084 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|.|.|.+ .+.-.++++..|=|++|. .-++.-|-..++|+|+|+-.-.. ..... .....|... +..--
T Consensus 64 ~Adgyar~---tg~~gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~---~~Q~~d~~~l~~~vtk 134 (578)
T PRK06112 64 MADGYARV---SGKVAVVTAQNGPAATLL---VAPLAEALKASVPIVALVQDVNRDQTDRN---AFQELDHIALFQSCTK 134 (578)
T ss_pred HHHHHHHH---hCCCEEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCC---CccccChhhhhccccc
Confidence 45566544 345566777778888873 44577788889999999844221 11100 000111111 11111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+| .+++.+.+.+..|+..++. .||+.|++-.
T Consensus 135 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (578)
T PRK06112 135 WVRRV--TVAERIDDYVDQAFTAATSGRPGPVVLLLPA 170 (578)
T ss_pred eEEEe--CCHHHHHHHHHHHHHHHhhCCCCcEEEEcCH
Confidence 12345 3688888888888877766 5899999863
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=85.28 E-value=7.3 Score=41.89 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=65.6
Q ss_pred Cccccch-hHHHHHHHHHHHhCC-CCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCch
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSK-DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~-~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~ 246 (348)
.|+-.+. +.+|.|+|+. + .-.++++.+. .+.. ...+++.+++..+|||+||....+.+.+.......+-.|
T Consensus 397 ~GIaEq~mv~~AaGlA~~----G~G~~P~~~tf~--~F~~-~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~ied 469 (654)
T PLN02790 397 FGVREHGMGAICNGIALH----SSGLIPYCATFF--VFTD-YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEH 469 (654)
T ss_pred eeechHHHHHHHHHHHhc----CCCcEEEEEecH--HHHH-HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcccHHH
Confidence 4555444 3566777652 2 1234444331 2232 467788999999999999998888765432222222234
Q ss_pred HHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+.-. -.+|.+.| .=-|..++..+++.|++. .++|+.|-+
T Consensus 470 la~l-R~iPnl~V~~PaD~~E~~~~l~~al~~--~~gP~~irl 509 (654)
T PLN02790 470 LASL-RAMPNILMLRPADGNETAGAYKVAVTN--RKRPTVLAL 509 (654)
T ss_pred HHHh-cCCCCcEEEeCCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 3321 13666544 335788889999888862 279988754
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=85.01 E-value=8.3 Score=40.44 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|-|.|.+ .+.-.++++..|=|.+|. .-++..|-..+.|+|+|.-.-... .... .....|... +.+-
T Consensus 56 ~mAdgyar~---tg~~gv~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~---~~q~~d~~~l~~~vt 126 (574)
T PRK06882 56 HMADGYARS---TGKVGCVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNLIGTD---AFQECDMLGISRPVV 126 (574)
T ss_pred HHHHHHHHh---hCCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC---cccccchhhhhhccc
Confidence 345555543 344556777779988873 345777778899999997543321 1110 000111111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
....+| +++.++...+.+|+..+.. .||+.|++-.
T Consensus 127 k~s~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06882 127 KHSFIV--KNAEDIPSTIKKAFYIASTGRPGPVVIDIPK 163 (574)
T ss_pred ceEEEe--CCHHHHHHHHHHHHHHHhcCCCCCEEEecCH
Confidence 223456 3788888888888877766 5999999864
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.95 E-value=7.7 Score=41.00 Aligned_cols=108 Identities=17% Similarity=0.216 Sum_probs=62.8
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHH-HHHHHHHCCCCeEEEEecCCcccccccccccCCch
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFE-ALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~E-aln~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~ 246 (348)
.|+-.++ +++|.|+|+. + -++++.. =..|.+ ..+| ..+.++..++|+++++...++. +..........|
T Consensus 326 ~GIaE~~mvg~A~GlA~~----G-~~p~~~~--f~~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~-g~dG~tH~~~ed 396 (580)
T PRK05444 326 VGIAEQHAVTFAAGLATE----G-LKPVVAI--YSTFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLV-GADGPTHQGAFD 396 (580)
T ss_pred CChHHHHHHHHHHHHHHC----C-CeeEEEe--eHHHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcC-CCCCccccccHH
Confidence 4544444 3567777762 2 3444444 345554 4455 4566889999999999866652 111111112223
Q ss_pred HHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+.-. -.+|++.| .-.|+.++..+++.|++. .++|++|-.
T Consensus 397 ia~l-r~iP~l~V~~Psd~~e~~~~l~~a~~~--~~~P~~ir~ 436 (580)
T PRK05444 397 LSYL-RCIPNMVIMAPSDENELRQMLYTALAY--DDGPIAIRY 436 (580)
T ss_pred HHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCcEEEEe
Confidence 3321 13666543 446889999999999862 379998755
|
|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=84.91 E-value=7.5 Score=42.00 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=63.2
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.+. +.+|+|+|+. + -+++++++. .|.+=.+.+-.+.++..++||+|++...++.- ..........|+
T Consensus 403 vGIAEq~~vg~AaGLA~~----G-~kPvv~~fs--~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg-~dG~TH~~~~Di 474 (677)
T PLN02582 403 VGIAEQHAVTFAAGLACE----G-LKPFCAIYS--SFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGPTHCGAFDV 474 (677)
T ss_pred cCcCHHHHHHHHHHHHHC----C-CeEEEEecH--HHHHHHHHHHHHHHHhcCCCEEEEEECCCccc-CCCCcccccHHH
Confidence 4554443 3556666653 2 455666653 55552333456777899999999998766521 111111122333
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+-. -.+|++.| .=.|..+++.+++.|+.. .++|++|-.
T Consensus 475 a~l-r~iPnl~V~~Psd~~E~~~~l~~al~~--~~gPv~IR~ 513 (677)
T PLN02582 475 TYM-ACLPNMVVMAPSDEAELFHMVATAAAI--DDRPSCFRY 513 (677)
T ss_pred HHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCCEEEEE
Confidence 321 13666544 345788889999888862 269998854
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=84.47 E-value=8.3 Score=40.48 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcC
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGD 252 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~ 252 (348)
.-+|-|.|.. .+.-.++++..|=|.+|. .-++..|-.-+.|+|+|.-.... .+... .....|... +.+
T Consensus 61 ~~~Adgyar~---tg~~gv~~~t~GPG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~~~~~i 131 (566)
T PRK07282 61 LHEAEGYAKS---TGKLGVAVVTSGPGATNA---ITGIADAMSDSVPLLVFTGQVARAGIGKD---AFQEADIVGITMPI 131 (566)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecccccccCCCC---CccccChhchhcCC
Confidence 3445555543 344567777789998872 34577777889999999855332 12111 000111111 011
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-....+|+ ++.++.+++.+|+..+++ .||+.|++-.
T Consensus 132 tk~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 132 TKYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred CceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCCh
Confidence 11224553 688888888888888876 5999999854
|
|
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=84.23 E-value=6.1 Score=42.75 Aligned_cols=109 Identities=9% Similarity=0.009 Sum_probs=64.4
Q ss_pred CCccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccc-cccCCc
Q 018967 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEW-RAAKSP 245 (348)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~-~~~~~~ 245 (348)
..|+-.++ +.+|+|+|.. .-+++++++. .|-+=.+.+-.+-++..++||+||+..-++. .... ......
T Consensus 427 DvGIAEQhaVt~AAGLA~~-----G~kPvv~iys--tFlqRAyDQI~~Dval~~lpV~~vid~aGlv--g~DG~TH~g~~ 497 (701)
T PLN02225 427 NVGMAEQHAVTFSAGLSSG-----GLKPFCIIPS--AFLQRAYDQVVHDVDRQRKAVRFVITSAGLV--GSDGPVQCGAF 497 (701)
T ss_pred ccCccHHHHHHHHHHHHHC-----CCEEEEEeeh--hHHHHHHHHHHHHHHhhcCCceEEEECCccC--CCCCccccccH
Confidence 34555444 3556677643 3467777773 6766334445555789999999998765442 1111 111222
Q ss_pred hHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 246 ~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
|++-. -.+|++.| -=.|+.+++.++++|... .++|++|-.
T Consensus 498 Dia~l-r~IPnm~V~aPsD~~El~~mL~~A~~~--~~gPv~IR~ 538 (701)
T PLN02225 498 DIAFM-SSLPNMIAMAPADEDELVNMVATAAYV--TDRPVCFRF 538 (701)
T ss_pred HHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhc--CCCCEEEEe
Confidence 33221 13666554 345788899999887742 379999754
|
|
| >PLN02683 pyruvate dehydrogenase E1 component subunit beta | Back alignment and domain information |
|---|
Probab=84.16 E-value=7.2 Score=38.75 Aligned_cols=106 Identities=20% Similarity=0.145 Sum_probs=56.6
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEe-CCccccchhHHHHHHHHHHCC--------CCeEEEEecCCccccccc
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALY-GDGAANQGQLFEALNIAALWD--------LPAILVCENNHYGMGTAE 238 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~-GDGa~~~G~~~Ealn~Aa~~~--------LPvI~Vv~NN~~~i~~~~ 238 (348)
.|+-.++ +++|+|+|++ ..+++++++ .|=. +=.+.+-.+-++.++ +||+|++.+ +...+.
T Consensus 79 ~GIAEq~~vg~AaGlA~~-----G~~P~v~~~~~~f~--~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g~-- 148 (356)
T PLN02683 79 TPITEAGFTGIGVGAAYA-----GLKPVVEFMTFNFS--MQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAGV-- 148 (356)
T ss_pred CchhHHHHHHHHHHHHHC-----CCEEEEEEehhhHH--HHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCCC--
Confidence 3443333 4667777764 224444443 3222 212333446667666 999999877 432221
Q ss_pred ccccCCchHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 239 WRAAKSPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 239 ~~~~~~~~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
.......+.+-. -.+|++.| .=.|+.+++.+++.|++ .++|++|-.
T Consensus 149 G~tH~~~~~a~l-r~iPnl~V~~Pad~~e~~~~l~~a~~---~~gPv~ir~ 195 (356)
T PLN02683 149 GAQHSQCFAAWY-SSVPGLKVLAPYSSEDARGLLKAAIR---DPDPVVFLE 195 (356)
T ss_pred CCccccCHHHHH-hcCCCCEEEEeCCHHHHHHHHHHHHh---CCCcEEEEE
Confidence 111111122111 13666544 33578899999998885 389998853
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=84.06 E-value=9.1 Score=40.08 Aligned_cols=103 Identities=20% Similarity=0.171 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cC
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~ 252 (348)
.-+|-|.+.+ .++-.++++..|=|.+|. .-++.-|-.-+.|+|++.-.-... +.. ......|.... ..
T Consensus 58 ~~~Adgyar~---tg~~~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~~~~i 128 (561)
T PRK06048 58 AHAADGYARA---TGKVGVCVATSGPGATNL---VTGIATAYMDSVPIVALTGQVPRSMIGN---DAFQEADITGITMPI 128 (561)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEeccCCccccCC---CCccccchhhhccCc
Confidence 3445565544 344567777789999873 445777888899999887432211 100 00011122111 11
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
--...+| .++.++.+.+.+|+..+++ .||+.|++-
T Consensus 129 tk~s~~v--~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 129 TKHNYLV--QDAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred ceEEEEe--CCHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 1112345 4688888888888887766 599999985
|
|
| >PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=83.57 E-value=13 Score=37.48 Aligned_cols=112 Identities=17% Similarity=0.108 Sum_probs=69.3
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh-hcC
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGD 252 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~-~g~ 252 (348)
+.+.+++|++++ +..+.+.+--.+++ ..+|.|.+|+-.++|+++++-|-..+ .+........|+.. +..
T Consensus 61 aA~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~--~p~~i~~d~~D~~~~rd~ 130 (394)
T PRK08367 61 SAISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALS--APINIWNDWQDTISQRDT 130 (394)
T ss_pred HHHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCC--CCCCcCcchHHHHhcccc
Confidence 345667787776 33455544333333 36899999999999998887554332 23221111123322 333
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc---CCCEEEEEEEecCCCCCC
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK---NGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~---~gP~lIe~~t~R~~GHs~ 298 (348)
|. +.+-..|+.+++.-...|.+.+.+ .-|+++-...||. +|+.
T Consensus 131 g~--~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~~ 176 (394)
T PRK08367 131 GW--MQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THTV 176 (394)
T ss_pred Ce--EEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCcc
Confidence 33 223346888888888888877764 3699999999885 5653
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=83.48 E-value=10 Score=40.06 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|.|.|.. .+.-.++++..|=|.+|. .-++.-|..-+.|+|+|+-.-.. .+... .....|... +.+--
T Consensus 66 ~Adgyar~---tg~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~~d~~~~~~~~tk 136 (585)
T CHL00099 66 AADGYARS---TGKVGVCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIGTD---AFQEVDIFGITLPIVK 136 (585)
T ss_pred HHHHHHHh---cCCcEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC---CccccchhhhhcCcee
Confidence 44555433 344566777779998873 34577788889999988753221 11110 001112211 11112
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+|+ +++.+.+.+++|+..+++ .||+.|++-.
T Consensus 137 ~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 172 (585)
T CHL00099 137 HSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIPK 172 (585)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecCh
Confidence 224564 788899999999888776 5899999753
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=83.07 E-value=9.5 Score=40.07 Aligned_cols=104 Identities=20% Similarity=0.247 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcC
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~ 252 (348)
.-+|-|.|.+ .+.-.++++..|=|.+|. .-++.-|-..+.|+|++.-.-... .+. ......|... +..
T Consensus 55 ~~mAdgyar~---tg~~gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~~~~i 125 (572)
T PRK08979 55 VHMADGYARA---TGKVGVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNLIGN---DAFQECDMIGISRPV 125 (572)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCCcccchhHHhhhc
Confidence 3445566544 344556777779998873 345677778899999887433221 110 0011112111 111
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
--...+|+ +++++.+.+++|+..++. .||+.|++-.
T Consensus 126 tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (572)
T PRK08979 126 VKHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPK 163 (572)
T ss_pred eeEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCH
Confidence 11224564 788899999999988776 5999999753
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.00 E-value=7.9 Score=41.27 Aligned_cols=110 Identities=25% Similarity=0.269 Sum_probs=64.8
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +++|+|+|+. +.-+++++.+ ..+. .-.++.+.+++..++|+++|....+++.+........-.|+
T Consensus 372 ~GIaE~~~vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~edi 444 (624)
T PRK05899 372 YGVREFAMAAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQL 444 (624)
T ss_pred eChhHHHHHHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHHH
Confidence 3444433 3556666643 2134444433 2444 46788899999999999999988776433211111111232
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
.-. -.+|++.| .=.|+.++..+++.|++. .++|++|-.
T Consensus 445 a~~-r~iP~~~V~~P~d~~e~~~~l~~a~~~--~~~P~~ir~ 483 (624)
T PRK05899 445 ASL-RAIPNLTVIRPADANETAAAWKYALER--KDGPSALVL 483 (624)
T ss_pred HHH-HhCCCcEEEeCCCHHHHHHHHHHHHHc--CCCCEEEEE
Confidence 221 13666544 445888999999998862 279998866
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=82.80 E-value=8.7 Score=40.10 Aligned_cols=105 Identities=16% Similarity=0.089 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccc--cccccCCc-hHHhh--cC
Q 018967 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTA--EWRAAKSP-SYYKR--GD 252 (348)
Q Consensus 179 A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~--~~~~~~~~-~~~~~--g~ 252 (348)
|-|.|.+ .+.-.++++..|=|.+|. .-++..|...+.|+|+++-+.... .... .+.+.... +.... ..
T Consensus 54 Adgyar~---tg~~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 127 (535)
T TIGR03394 54 ADAAARY---RGTLGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEV 127 (535)
T ss_pred HhHHHHh---hCCceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhh
Confidence 5555543 344567778889999883 345777888899999998653321 1110 00010001 11111 11
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (348)
--...+|. ++..+.+++.+|+..+.. .||++|++-..
T Consensus 128 tk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~D 165 (535)
T TIGR03394 128 TCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPRD 165 (535)
T ss_pred eEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEechh
Confidence 11123442 566666666666666555 79999998643
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=82.69 E-value=6.8 Score=41.15 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCccc-cccc---c--cccCC-chHHh-
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAE---W--RAAKS-PSYYK- 249 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i-~~~~---~--~~~~~-~~~~~- 249 (348)
+|-|.|.. .++-.++++..|=|.+| ..-++..|..-+.|+|+|+-+-.... .... . ..+.. .|...
T Consensus 65 ~Adgyar~---tgk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~ 138 (569)
T PRK08327 65 MAHGYALV---TGKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGL 138 (569)
T ss_pred HHHHHHHh---hCCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHH
Confidence 45555543 34446677778999887 34567788888999999986543221 1100 0 00111 12111
Q ss_pred -hcCCcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 250 -RGDYVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 250 -~g~gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
+..--...+|+ +++.+..++.+|+..+++ .||++|++-
T Consensus 139 ~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 139 VREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 11111113453 688999999999988876 699999986
|
|
| >COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.56 E-value=11 Score=36.47 Aligned_cols=109 Identities=18% Similarity=0.266 Sum_probs=67.1
Q ss_pred CCccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHH-HHCCCCeEEEEecCCcccccccccccCCc
Q 018967 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIA-ALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (348)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~A-a~~~LPvI~Vv~NN~~~i~~~~~~~~~~~ 245 (348)
+.|+..+. ++.|+|+|++- ..+.++-+ +.|..+-.||=+.++ +..+|||-+|+.+-++..+........-.
T Consensus 53 NvGIaEQ~mvg~AAGLA~~G-----k~Pfv~tf--a~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~E 125 (312)
T COG3958 53 NVGIAEQDMVGTAAGLALAG-----KKPFVSTF--AAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALE 125 (312)
T ss_pred ecchHHHHHHHHHHHHHhcC-----CCceeech--HHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHH
Confidence 45666655 47788888763 23444443 577777788877666 46689999999998875433222222223
Q ss_pred hHHh-hcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 246 SYYK-RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 246 ~~~~-~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
|++= |+ +|-..| .-.|...+++++..+.++ +||+.+-+
T Consensus 126 DiaimR~--lpn~~V~~P~D~v~~~~i~~~~~~~---~GP~Y~Rl 165 (312)
T COG3958 126 DIAIMRG--LPNMTVIAPADAVETRAILDQIADY---KGPVYMRL 165 (312)
T ss_pred HHHHHhc--CCCceEEccCcHHHHHHHHHHHHhc---CCCEEEEe
Confidence 4432 33 444332 445676777777776665 99988644
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=82.46 E-value=12 Score=39.31 Aligned_cols=103 Identities=21% Similarity=0.161 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|-|.|.. .+.-.++++..|=|.+|. .-++.-|-..+.|+|++.-.=... ... ......|... +.+-
T Consensus 55 ~~Adgyar~---tg~~gv~~~t~GpG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~~~~~t 125 (563)
T PRK08527 55 HAADGYARA---SGKVGVAIVTSGPGFTNA---VTGLATAYMDSIPLVLISGQVPNSLIGT---DAFQEIDAVGISRPCV 125 (563)
T ss_pred HHHHHHHhh---hCCCEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCCcccchhhhhhccc
Confidence 345555433 344567777779999872 345777788899999887422110 000 0000111111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+| ++++++.+++++|+..+++ .||+.|++-.
T Consensus 126 k~s~~v--~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~ 162 (563)
T PRK08527 126 KHNYLV--KSIEELPRILKEAFYIARSGRPGPVHIDIPK 162 (563)
T ss_pred ceEEEc--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 112345 5799999999999988876 5899999863
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=81.62 E-value=9.9 Score=40.19 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCC-
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY- 253 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~g- 253 (348)
+|-|.|.+ .+.-.++++..|=|++|. .-++.-|-.-+.|+|+|+-.=... +.. ......|... +..-
T Consensus 57 ~Adgyar~---tg~~gv~~~t~GPG~~n~---~~gi~~A~~d~vPvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~vt~ 127 (597)
T PRK08273 57 MAVAHAKF---TGEVGVCLATSGPGAIHL---LNGLYDAKLDHVPVVAIVGQQARAALGG---HYQQEVDLQSLFKDVAG 127 (597)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCchhhcCC---CCCCccCHHHHHHHHHH
Confidence 45555544 234456777779999873 345777788899999988432211 111 0011111111 0011
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (348)
-...+|+ +++.+.+.+.+|+..+.. .||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~ 163 (597)
T PRK08273 128 AFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPN 163 (597)
T ss_pred HHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCc
Confidence 1124553 677888888888887777 7999998864
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=81.18 E-value=12 Score=39.76 Aligned_cols=108 Identities=11% Similarity=0.086 Sum_probs=63.0
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +++|+|+|+. + -+++++.+.+ +-+-.+.+-.+-++..++||+|++...++.-..++ .....|+
T Consensus 325 ~GIaEq~~v~~AaGlA~~----G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~T--H~~~~Di 395 (581)
T PRK12315 325 VGIAEQESVAFASGIAAN----G-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVT--HLGIFDI 395 (581)
T ss_pred CCchHHHHHHHHHHHHHC----c-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCcc--ccccHHH
Confidence 4554443 3556676653 2 3455556654 43423333455678899999999986555321111 1122333
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+-. -.+|++.| ---|+.++..+++.|++. .++|++|-.
T Consensus 396 a~l-r~iPnl~V~~P~d~~e~~~~l~~a~~~--~~gP~~ir~ 434 (581)
T PRK12315 396 PMI-SNIPNLVYLAPTTKEELIAMLEWALTQ--HEHPVAIRV 434 (581)
T ss_pred HHH-hcCCCCEEEecCCHHHHHHHHHHHHhC--CCCcEEEEE
Confidence 321 24666655 446888999999988852 279998865
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.71 E-value=14 Score=38.83 Aligned_cols=101 Identities=11% Similarity=0.043 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~gi 254 (348)
+|.|.|.+ .+.-.++++..|=|.+|- .-++.-|..-+.|+|+|.-+-... .+.. .....+.... ..--
T Consensus 56 ~Adgyar~---tg~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~---~~Q~~d~~~l~~~itk 126 (574)
T PRK09124 56 AAGAEAQL---TGELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSG---YFQETHPQELFRECSH 126 (574)
T ss_pred HHHHHHHh---hCCcEEEEECCCCCHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCC---CccccChhhhccccee
Confidence 45566543 233344444568888872 234667778899999998643321 1110 0001111110 1111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
...+|+ ++..+.+.+.+|+..+.. .||+.|++-
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP 160 (574)
T PRK09124 127 YCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLP 160 (574)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 113453 677777777777777666 799999974
|
|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.52 E-value=10 Score=39.89 Aligned_cols=91 Identities=23% Similarity=0.170 Sum_probs=54.5
Q ss_pred CcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhhcCCcceEEEcCCCHHHHHHH
Q 018967 192 ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQA 270 (348)
Q Consensus 192 ~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~g~gipg~~VDG~D~~av~~a 270 (348)
-.++++..|=|.+|. .-++..|..-+.|+|+|+-..... ...... ....... +..--...+| .+++.+.+.
T Consensus 82 ~gv~~~t~GPG~~N~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~--~d~~~~~-~~vtk~~~~v--~~~~~~~~~ 153 (565)
T PRK06154 82 VGVFAVQYGPGAENA---FGGVAQAYGDSVPVLFLPTGYPRGSTDVAPN--FESLRNY-RHITKWCEQV--TLPDEVPEL 153 (565)
T ss_pred CEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCcccccCCCC--cchhhhH-hhcceeEEEC--CCHHHHHHH
Confidence 345555679998873 345777888899999998543321 111000 0001111 1111112455 378888888
Q ss_pred HHHHHHHhcc--CCCEEEEEEE
Q 018967 271 CKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 271 ~~~A~~~ar~--~gP~lIe~~t 290 (348)
+.+|+..+++ .||++|++-.
T Consensus 154 i~~A~~~A~s~~~GPV~l~iP~ 175 (565)
T PRK06154 154 MRRAFTRLRNGRPGPVVLELPV 175 (565)
T ss_pred HHHHHHHHhcCCCceEEEecch
Confidence 8888887776 6999999864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 348 | ||||
| 3exf_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 3e-88 | ||
| 3exe_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 4e-88 | ||
| 3exi_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 9e-88 | ||
| 3exh_C | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 1e-87 | ||
| 2ozl_A | 365 | Human Pyruvate Dehydrogenase S264e Variant Length = | 1e-87 | ||
| 1ni4_A | 365 | Human Pyruvate Dehydrogenase Length = 365 | 1e-82 | ||
| 1w85_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1 | 7e-27 | ||
| 3duf_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 7e-27 | ||
| 1um9_A | 367 | Branched-chain 2-oxo Acid Dehydrogenase (e1) From T | 1e-26 | ||
| 3dva_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 1e-26 | ||
| 1w88_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1( | 1e-26 | ||
| 1dtw_A | 400 | Human Branched-Chain Alpha-Keto Acid Dehydrogenase | 2e-24 | ||
| 2j9f_A | 400 | Human Branched-Chain Alpha-Ketoacid Dehydrogenase- | 3e-24 | ||
| 2bff_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 3e-24 | ||
| 1x7y_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 3e-24 | ||
| 1x7x_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 5e-24 | ||
| 1x7w_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 5e-24 | ||
| 1x7z_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 5e-24 | ||
| 1x80_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 6e-24 | ||
| 2bfb_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 2e-23 | ||
| 2bfe_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 2e-23 | ||
| 1olu_A | 400 | Roles Of His291-Alpha And His146-Beta' In The Reduc | 2e-23 | ||
| 1v16_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 6e-23 | ||
| 2bfc_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 2e-22 | ||
| 1v11_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 2e-22 | ||
| 1v1m_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 5e-22 | ||
| 2bfd_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 7e-22 | ||
| 2bp7_A | 410 | New Crystal Form Of The Pseudomonas Putida Branched | 1e-21 | ||
| 1qs0_A | 407 | Crystal Structure Of Pseudomonas Putida 2-Oxoisoval | 7e-21 |
| >pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382 | Back alignment and structure |
|
| >pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365 | Back alignment and structure |
|
| >pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365 | Back alignment and structure |
|
| >pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
|
| >pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
|
| >pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367 | Back alignment and structure |
|
| >pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
|
| >pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
|
| >pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400 | Back alignment and structure |
|
| >pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410 | Back alignment and structure |
|
| >pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365 | Back alignment and structure |
|---|
Score = 492 bits (1269), Expect = e-176
Identities = 166/309 (53%), Positives = 214/309 (69%), Gaps = 5/309 (1%)
Query: 34 TTPLTIETSVPFTSHQCE-APSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRG 92
T E H+ E P + T ++ L ++R M T+RRME+ AD LYK K++RG
Sbjct: 6 ANDATFEIK-KCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRG 64
Query: 93 FCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGK 152
FCHL DGQEA +G+EAGI D +ITAYR H RG ++ E+ +EL GRK GC+ GK
Sbjct: 65 FCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGK 124
Query: 153 GGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212
GGSMH Y K FYGG+GIVGAQ+PLG G+A A KY+ + V LYGDGAANQGQ+FEA
Sbjct: 125 GGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEA 182
Query: 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACK 272
N+AALW LP I +CENN YGMGT+ RAA S YYKRGD++PGL+VDGMD L V++A +
Sbjct: 183 YNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATR 242
Query: 273 FAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAH 331
FA + GP+++E+ TYRYHGH MSDPG +YRTR+EI VR + DPI ++ ++
Sbjct: 243 FAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNS 302
Query: 332 DLATEKELK 340
+LA+ +ELK
Sbjct: 303 NLASVEELK 311
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 | Back alignment and structure |
|---|
Score = 289 bits (742), Expect = 2e-96
Identities = 81/286 (28%), Positives = 130/286 (45%), Gaps = 8/286 (2%)
Query: 60 TPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVAIGMEAGITK-KDSI 117
++L +R M R ++ L + K F G EA + + I D +
Sbjct: 34 EGEKLRRLYRDMLAARMLDERYTILIRTGKT--SFIAPAAGHEAAQVAIAHAIRPGFDWV 91
Query: 118 ITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIP 177
YRDH L G L E+ +++ K + G+ H K F+ + + +P
Sbjct: 92 FPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVP 151
Query: 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTA 237
G A + K + V +GDGA ++G + +N AA+ PA+ + ENN Y +
Sbjct: 152 PAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVD 211
Query: 238 EWRAAKSPSYYKRGD-Y-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294
SP+ + + +PG VDGMD LA K A E A + GP ++E+ YRY
Sbjct: 212 YRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYG 271
Query: 295 GHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
HS +D S YR ++E++ R+ +DPI R R+ + A L E+ +
Sbjct: 272 PHSSADDDSRYRPKEEVAFWRK-KDPIPRFRRFLEARGLWNEEWEE 316
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 2e-83
Identities = 86/294 (29%), Positives = 137/294 (46%), Gaps = 19/294 (6%)
Query: 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVAIGMEAGI 111
E + ++L R+M R ++ + SL + +L GF GQEA I +
Sbjct: 35 EEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL--GFYAPTAGQEASQIASHFAL 92
Query: 112 TKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGI 171
K+D I+ YRD + G L + F G H G + + I
Sbjct: 93 EKEDFILPGYRDVPQIIWHGLPLYQAFLFSRG------HFHGNQIP---EGVNVLPPQII 143
Query: 172 VGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231
+GAQ G+A K + V GDG +QG +E +N A + PAI V +NN
Sbjct: 144 IGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 203
Query: 232 YGMGTAEWRAAKSPSYYKRGD-Y-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288
+ + T + + + ++ +PG++VDGMD LAV A K A+E A+ GP ++E
Sbjct: 204 FAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIET 263
Query: 289 DTYRYHGHSMS--DPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
+RY H+MS DP + YR+++ + + +DP+ R RK + A L +E+E
Sbjct: 264 LCFRYGPHTMSGDDP-TRYRSKELENEWAK-KDPLVRFRKFLEAKGLWSEEEEN 315
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 3e-83
Identities = 77/286 (26%), Positives = 127/286 (44%), Gaps = 8/286 (2%)
Query: 60 TPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVAIGMEAGITKKDSII 118
P+ L R M R + + K+ F G+EA+ G + + D
Sbjct: 72 DPQILRQGMRAMLKTRIFDSRMVVAQRQKKM--SFYMQSLGEEAIGSGQALALNRTDMCF 129
Query: 119 TAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPL 178
YR + R +L+E+ +L+ + G+ + + +++GF+ G + Q
Sbjct: 130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQ 189
Query: 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAE 238
G A A D + A GDGA + AL A ++ P IL NN + + T +
Sbjct: 190 AVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQ 249
Query: 239 WRA-AKSPSYYKRGD-Y-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294
A +S ++ RG + L+VDG D +AV A ++A E A + GP ++E TYR
Sbjct: 250 AIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAG 309
Query: 295 GHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
HS SD S YR D+ S DPI R+++ ++ +E+E +
Sbjct: 310 PHSTSDDPSKYRPADDWSHFPL-GDPIARLKQHLIKIGHWSEEEHQ 354
|
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 5e-83
Identities = 75/291 (25%), Positives = 125/291 (42%), Gaps = 4/291 (1%)
Query: 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT 112
PS +++L ++ M + M+ + + + Y G+E +G A +
Sbjct: 46 PSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALD 104
Query: 113 KKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV 172
D + R+ + R L ++ G G+ +H+ K+ F +
Sbjct: 105 NTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPL 164
Query: 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY 232
QIP G A+A K + V +G+GAA++G N AA + P I C NN Y
Sbjct: 165 ATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGY 224
Query: 233 GMGTAEWRAAKSPSYYKRGD-Y-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289
+ T + RG Y + ++VDG D AV A K A+ A+ N P ++E
Sbjct: 225 AISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAM 284
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
TYR S SD S +R+ DE++ ++ PI R+R +L+ E++ K
Sbjct: 285 TYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK 335
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 39.2 bits (90), Expect = 5e-04
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 17 LKPLTNSFLLHRPISTDTTP-LTIETSV 43
LK L S L+ D+ P L I+ ++
Sbjct: 22 LKKLQASLKLYAD---DSAPALAIKATM 46
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 348 | |||
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 100.0 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 100.0 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 100.0 | |
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 100.0 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 100.0 | |
| 2yic_A | 868 | 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 | 100.0 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 100.0 | |
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavopr | 100.0 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 99.98 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 99.97 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 99.95 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 99.94 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 99.94 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 99.94 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 99.93 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 99.93 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 99.93 | |
| 2qtc_A | 886 | Pyruvate dehydrogenase E1 component; thiamin dipho | 99.92 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 99.92 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 99.92 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 99.91 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 99.9 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 99.88 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 99.63 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 99.6 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 99.58 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 99.57 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 99.57 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 99.56 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 99.55 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 99.54 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 99.54 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 99.54 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 99.53 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 99.52 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 99.52 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 99.52 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 99.51 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 99.49 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 99.49 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 99.47 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 99.45 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 99.43 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 99.41 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 99.34 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 98.82 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 91.18 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 91.11 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 89.95 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 89.66 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 89.64 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 88.68 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 88.56 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 88.22 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 87.97 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 87.96 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 87.91 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 87.62 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 87.52 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 87.04 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 86.83 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 86.62 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 86.56 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 86.37 | |
| 1yd7_A | 395 | 2-keto acid:ferredoxin oxidoreductase subunit alph | 85.54 | |
| 2ozl_B | 341 | PDHE1-B, pyruvate dehydrogenase E1 component subun | 85.54 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 85.44 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 84.87 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 83.97 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 83.78 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 83.57 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 83.53 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 83.19 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 82.48 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 82.34 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 82.3 | |
| 1ik6_A | 369 | Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o | 82.08 | |
| 1qs0_B | 338 | 2-oxoisovalerate dehydrogenase beta-subunit; heter | 81.94 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 81.84 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 81.71 | |
| 2bfd_B | 342 | 2-oxoisovalerate dehydrogenase beta subunit; oxido | 80.05 |
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-78 Score=590.24 Aligned_cols=311 Identities=54% Similarity=0.945 Sum_probs=296.0
Q ss_pred CCcceecCCcccccccccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC
Q 018967 34 TTPLTIETSVPFTSHQCEA-PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT 112 (348)
Q Consensus 34 ~~~~~~~~~~~~~~~~~e~-~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~ 112 (348)
.++.+|+.+ ||+.|+++. |+..+.+|+++++++|+.|+++|+||+++..+|++|+++||+|++.||||+++|+..+|+
T Consensus 6 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~ 84 (365)
T 2ozl_A 6 ANDATFEIK-KCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN 84 (365)
T ss_dssp CSEEEEECC-CCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC
T ss_pred ccccccccC-ccccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhC
Confidence 345677776 999999986 677788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCC
Q 018967 113 KKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE 192 (348)
Q Consensus 113 ~~D~i~~~yR~~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~ 192 (348)
++|+|+++||+|++++++|+++.++|+|++|+.+++++|++|+||++.+ ++++++|+||+++|+|+|+|+|.|+++++
T Consensus 85 ~~D~i~~~yR~~~~~~~~G~~~~~i~~e~~g~~~g~~~g~gg~~H~~~~--~~~~~~g~~G~~lp~A~G~A~A~~~~~~~ 162 (365)
T 2ozl_A 85 PTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYNGKD 162 (365)
T ss_dssp TTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCBT--TBCCCCCSTTTHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEehHHHHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCCCcCcc--ccCCCcchhhhhhHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999764 88999999999999999999999999999
Q ss_pred cEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhcCCcceEEEcCCCHHHHHHHHH
Q 018967 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACK 272 (348)
Q Consensus 193 ~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g~gipg~~VDG~D~~av~~a~~ 272 (348)
++|||++|||++++|.++|+||+|++|+||+||||+||+|+++++..+.+..++|+++++|+|+++|||+|+++|++|++
T Consensus 163 ~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~ra~g~p~~~VdG~D~~av~~a~~ 242 (365)
T 2ozl_A 163 EVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATR 242 (365)
T ss_dssp CCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEEETTCHHHHHHHHH
T ss_pred ceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877777778899899999999999999999999999
Q ss_pred HHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 273 FAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 273 ~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
+|++++|+ +||+|||+.|||++|||++||+.+||+++|++.|++.+|||.+|+++|+++|++|++++++|+++++
T Consensus 243 ~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~ 318 (365)
T 2ozl_A 243 FAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVR 318 (365)
T ss_dssp HHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999998 9999999999999999999998889999999999866899999999999999999999999999876
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-70 Score=546.17 Aligned_cols=291 Identities=26% Similarity=0.387 Sum_probs=277.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCH
Q 018967 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTL 134 (348)
Q Consensus 55 ~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~ 134 (348)
..+.+++++++++|+.|+++|.||+++..+|++|++ +|||++.||||+++|+..+|+++|+|+++||+|+++|++|+++
T Consensus 67 ~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~-~~~~~~~GqEA~~vg~~~al~~~D~v~~~yR~~~~~l~~g~~~ 145 (407)
T 1qs0_A 67 WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSL 145 (407)
T ss_dssp GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-ccCcCCCChHHHHHHHHHhcCCCCEEEecccchHHHHhcCCCH
Confidence 346799999999999999999999999999999998 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHH
Q 018967 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN 214 (348)
Q Consensus 135 ~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn 214 (348)
.++|+|++|+..+.++|+++++|++.++.+|++++|+||+++|+|+|+|+|.|++++++++||++|||++++|.++|+||
T Consensus 146 ~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~ 225 (407)
T 1qs0_A 146 VEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALT 225 (407)
T ss_dssp HHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHH
Confidence 99999999999998999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCeEEEEecCCccccccccccc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018967 215 IAALWDLPAILVCENNHYGMGTAEWRAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (348)
Q Consensus 215 ~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (348)
+|++|+||+||||+||+|+++++..+.+ ..++|+++ +||+|+++|||+|+++|++|+++|++++|+ +||+|||+.|
T Consensus 226 ~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 305 (407)
T 1qs0_A 226 FAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVT 305 (407)
T ss_dssp HHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEEC
T ss_pred HHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 9999999999999999999999877665 46788775 599999999999999999999999999998 9999999999
Q ss_pred ecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 291 YRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 291 ~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
||++|||++|+++.||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++
T Consensus 306 ~R~~Ghs~~Dd~~~Yr~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~ 361 (407)
T 1qs0_A 306 YRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFE 361 (407)
T ss_dssp CCCSCSSTTCCGGGTSCTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred eccCCcCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998 5999999999999999999999999999876
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-68 Score=524.44 Aligned_cols=282 Identities=29% Similarity=0.454 Sum_probs=261.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCH
Q 018967 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTL 134 (348)
Q Consensus 55 ~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~ 134 (348)
..+.+|+++++++|+.|+++|.||+++.+++++|++ ||||++.||||+++|+..+|+++|+++++||+|++++++|.++
T Consensus 37 ~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~-g~~~~~~G~Ea~~vg~~~~l~~~D~v~~~~R~~~~~~~~G~~~ 115 (368)
T 1w85_A 37 AMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL 115 (368)
T ss_dssp GCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCCTTCHHHHHHHHHTCCTTCEEECCSSCHHHHHHTTCCH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ccCCCCCCHHHHHHHHHHhcCCcCEEEecchhHHHHHhcCCCH
Confidence 346799999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHH
Q 018967 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN 214 (348)
Q Consensus 135 ~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn 214 (348)
..+|+|++|+.+ |++|| ++.++.+++|++|+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||
T Consensus 116 ~~~~~el~G~~~------G~~~h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~ 186 (368)
T 1w85_A 116 YQAFLFSRGHFH------GNQIP---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGIN 186 (368)
T ss_dssp HHHHHHHHTCGG------GGCCC---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHH
T ss_pred HHHHHHHCCCCC------CCCCC---cccccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHH
Confidence 999999999875 35677 567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCeEEEEecCCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018967 215 IAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (348)
Q Consensus 215 ~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (348)
+|++|+||+||||+||+|+++++.......+++.++ +||+|+++|||+|+++|++|+++|++++|+ +||+|||+.||
T Consensus 187 ~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~ 266 (368)
T 1w85_A 187 FAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCF 266 (368)
T ss_dssp HHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECC
T ss_pred HHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEee
Confidence 999999999999999999999887776666788875 499999999999999999999999999998 89999999999
Q ss_pred cCCCCC-CCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 292 RYHGHS-MSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 292 R~~GHs-~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
|++||| ++|+++.||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++
T Consensus 267 r~~gHs~~~Ddp~~yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~ 322 (368)
T 1w85_A 267 RYGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAKGLWSEEEENNVIEQAK 322 (368)
T ss_dssp CSSCSCSSCC------CHHHHHHHH-TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999 999999999999999998 4999999999999999999999999999876
|
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-68 Score=531.01 Aligned_cols=292 Identities=25% Similarity=0.388 Sum_probs=258.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCH
Q 018967 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTL 134 (348)
Q Consensus 55 ~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~ 134 (348)
..+.+++++++++|+.|+++|.||+++.++|++|+++ |+|++.||||+++|+..+|+++|+|+++||+|++++++|+++
T Consensus 48 ~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~-~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~ 126 (400)
T 2bfd_A 48 EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRIS-FYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPL 126 (400)
T ss_dssp GCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-CCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-eeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCH
Confidence 3578999999999999999999999999999999985 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHH
Q 018967 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN 214 (348)
Q Consensus 135 ~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn 214 (348)
.++|++++|+.+++++|+++++|++.++.++++++|+||+++|+|+|+|+|.++.+++++|||++|||++++|.+||+||
T Consensus 127 ~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~ 206 (400)
T 2bfd_A 127 ELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFN 206 (400)
T ss_dssp HHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCeEEEEecCCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018967 215 IAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (348)
Q Consensus 215 ~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (348)
+|+.|+||+||||+||+|+++++.......+++.++ +||+++++|||+|+++|++|+++|++++|+ ++|+|||++||
T Consensus 207 ~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~ty 286 (400)
T 2bfd_A 207 FAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTY 286 (400)
T ss_dssp HHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred HHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 999999999999999999999987777666788775 599999999999999999999999999998 99999999999
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 292 RYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 292 R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
|++|||++|+++.||+++|++.|++..|||.+|+++|++.|++|++++++|+++++
T Consensus 287 R~~gHs~~D~~~~Yr~~~e~~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~ 342 (400)
T 2bfd_A 287 RIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSR 342 (400)
T ss_dssp CCC--CC-------------------CCHHHHHHHHHTTTTCCCHHHHHHHHHHHH
T ss_pred eeCCCCCCCCCccCCCHHHHHHHHhcCCHHHHHHHHHHHCCCCChHHHHHHHHHHH
Confidence 99999999998899999999999865689999999999999999999998887765
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-64 Score=495.33 Aligned_cols=290 Identities=28% Similarity=0.441 Sum_probs=276.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCC-CEEEcCCcchHHHHhcCCCH
Q 018967 56 SVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKK-DSIITAYRDHCTFLGRGGTL 134 (348)
Q Consensus 56 ~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~-D~i~~~yR~~~~~l~~G~~~ 134 (348)
.+.+|+++++++|+.|+++|.||+++..++++|++ ||++++.|||++++|+..+|+++ |+++++||+|++.+.+|+++
T Consensus 30 ~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~-g~~~~~~G~ea~~~~~~~~l~~~rD~i~~s~r~~~~~~~~G~~~ 108 (367)
T 1umd_A 30 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPL 108 (367)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-SCCCCCTTCHHHHHHHHHHSCTTTSEEECCTTTHHHHHHHTCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc-cCCCCCcCHHHHHHHHHHHcCCCCcEEEeCcHHHHHHHHcCCCH
Confidence 46799999999999999999999999999999998 89999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHH
Q 018967 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN 214 (348)
Q Consensus 135 ~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn 214 (348)
.++|++++|+.++++.|+++++|++.++.++++++|++|+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||
T Consensus 109 ~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~ 188 (367)
T 1umd_A 109 KELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGIN 188 (367)
T ss_dssp HHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCeEEEEecCCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018967 215 IAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (348)
Q Consensus 215 ~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (348)
+|+.|++|+||||+||+|+++++.......+++.++ ++|+|+++|||+|+.+|++|+++|++++++ +||+|||+.||
T Consensus 189 ~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~ 268 (367)
T 1umd_A 189 FAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVY 268 (367)
T ss_dssp HHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECC
T ss_pred HHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEee
Confidence 999999999999999999999887666666777775 599999999999999999999999999988 89999999999
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 292 RYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 292 R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
|.+||+++|+++.||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++
T Consensus 269 r~~Ghs~~D~~~~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~ 323 (367)
T 1umd_A 269 RYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIR 323 (367)
T ss_dssp CCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCccccCCHHHHHHHH-cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999998 4999999999999999999999999999876
|
| >2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-60 Score=509.27 Aligned_cols=308 Identities=20% Similarity=0.202 Sum_probs=263.7
Q ss_pred CCCcceecCC-------cccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHH
Q 018967 33 DTTPLTIETS-------VPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (348)
Q Consensus 33 ~~~~~~~~~~-------~~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~v 105 (348)
.+.++.+|+- .+|..+++|.+. +.+|+++++++|+.|+++|.||+++..+|+++|+.|+ .||||+++
T Consensus 84 yc~~ig~e~~~i~~~~~~~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~----~G~Ea~~~ 157 (868)
T 2yic_A 84 YCRHVGVEYTHILEPEQQRWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSL----EGAETVIP 157 (868)
T ss_dssp HSSSEEEECTTCSCHHHHHHHHHHHSSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCC----TTCTTHHH
T ss_pred hcCCCCcceeccCChHHhHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC----CChHHHHH
Confidence 4666777631 149999999754 7899999999999999999999999999999887664 99999999
Q ss_pred HHHhc------CCCCCEEEc-CCcchHHHHh--cCCCHHHHHHHHhCCCCCC-CC-CCCCCcCCCCCC------------
Q 018967 106 GMEAG------ITKKDSIIT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGC-SH-GKGGSMHFYKKD------------ 162 (348)
Q Consensus 106 g~~~~------l~~~D~i~~-~yR~~~~~l~--~G~~~~~~~ael~g~~~g~-~~-G~ggs~h~~~~~------------ 162 (348)
|+..+ ++++|++++ +||||+++|+ +|+++.++|+|++|+.+++ ++ |++.++|++...
T Consensus 158 g~~~~l~~~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~ 237 (868)
T 2yic_A 158 MMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIE 237 (868)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEE
T ss_pred HHHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCccee
Confidence 99866 558999998 8999999999 9999999999999998876 43 444478987532
Q ss_pred CCccCCCccccchhHHHHHHHHHHHhCC----------CCcEEEEEeCCccc-cchhHHHHHHHHHHCCCC---eEEEEe
Q 018967 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCE 228 (348)
Q Consensus 163 ~~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vI~Vv~ 228 (348)
.++.+++|+||+++|+|+|+|+|.|+++ .+.++||++|||++ +||.+||+||+|++|+|| +||||+
T Consensus 238 l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~ 317 (868)
T 2yic_A 238 VSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVV 317 (868)
T ss_dssp EEECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEE
T ss_pred eeecCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEE
Confidence 2456678999999999999999999864 66899999999995 999999999999999999 999999
Q ss_pred cCCcccccccccccCCchHHh--hcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCC
Q 018967 229 NNHYGMGTAEWRAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTY 305 (348)
Q Consensus 229 NN~~~i~~~~~~~~~~~~~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Y 305 (348)
||+|+++++.......+++.+ .+||+|+++|||+|+++|++|+++|++++|+ ++|+|||+.|||++|||++|+++ |
T Consensus 318 NN~~g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~-~ 396 (868)
T 2yic_A 318 NNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-M 396 (868)
T ss_dssp ECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-G
T ss_pred cCCcccccCccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccc-c
Confidence 999999997543333344444 3599999999999999999999999999998 99999999999999999999985 7
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 306 RTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 306 R~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
|+++|++.|++++||+.+|+++|+++|++|++|+++|+++++
T Consensus 397 ~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~ 438 (868)
T 2yic_A 397 TQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQ 438 (868)
T ss_dssp TCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 788889999878999999999999999999999999999875
|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-59 Score=510.42 Aligned_cols=308 Identities=20% Similarity=0.202 Sum_probs=262.8
Q ss_pred CCCcceecCC-------cccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHH
Q 018967 33 DTTPLTIETS-------VPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (348)
Q Consensus 33 ~~~~~~~~~~-------~~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~v 105 (348)
.|.++.+|+- .+|..+++|.+. +.+|+++++++|+.|+++|.||+++..+|++||+.|+ .||||+++
T Consensus 329 yc~~ig~e~~~i~~~~~~~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~----~GqEa~~~ 402 (1113)
T 2xt6_A 329 YCRHVGVEYTHILEPEQQRWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSL----EGAETVIP 402 (1113)
T ss_dssp HSSSEEEECTTCSCHHHHHHHHHHHHSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCC----TTCTTHHH
T ss_pred ccCCCCcceeccCCHHHhHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC----CChHHHHH
Confidence 4666777732 149999999754 7899999999999999999999999999999888774 99999999
Q ss_pred HHHhc------CCCCCEEEc-CCcchHHHHh--cCCCHHHHHHHHhCCCCCC-CC-CCCCCcCCCCCC------------
Q 018967 106 GMEAG------ITKKDSIIT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGC-SH-GKGGSMHFYKKD------------ 162 (348)
Q Consensus 106 g~~~~------l~~~D~i~~-~yR~~~~~l~--~G~~~~~~~ael~g~~~g~-~~-G~ggs~h~~~~~------------ 162 (348)
|+..+ ++++|++++ +||||+++|+ +|+++.++|+|++|+.+++ ++ |++.++|++...
T Consensus 403 g~~~~l~~~~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~ 482 (1113)
T 2xt6_A 403 MMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIE 482 (1113)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEE
T ss_pred HHHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCccee
Confidence 98777 558999998 8999999999 9999999999999998876 43 444478987532
Q ss_pred CCccCCCccccchhHHHHHHHHHHHhCC----------CCcEEEEEeCCccc-cchhHHHHHHHHHHCCCC---eEEEEe
Q 018967 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCE 228 (348)
Q Consensus 163 ~~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vI~Vv~ 228 (348)
.++.+++|+||+++|+|+|+|+|.|+.+ .+.+++|++|||++ +||.+||+||+|++|+|| +||||+
T Consensus 483 l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~ 562 (1113)
T 2xt6_A 483 VSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVV 562 (1113)
T ss_dssp EEECCCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEE
T ss_pred eeecCCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEE
Confidence 2456678999999999999999999865 57899999999995 999999999999999999 999999
Q ss_pred cCCcccccccccccCCchHHh--hcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCC
Q 018967 229 NNHYGMGTAEWRAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTY 305 (348)
Q Consensus 229 NN~~~i~~~~~~~~~~~~~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Y 305 (348)
||+|+|+++.......+++.+ .+||+|+++|||+|+++|++|+++|++++|+ ++|+|||+.|||++|||++|+++ |
T Consensus 563 NN~~gist~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~-~ 641 (1113)
T 2xt6_A 563 NNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-M 641 (1113)
T ss_dssp ECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-G
T ss_pred eCCcccccCccccccccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccc-c
Confidence 999999997543333333333 3699999999999999999999999999998 99999999999999999999985 7
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 306 RTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 306 R~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
|.++|++.|++++||+.+|+++|+++|++|++|+++|+++++
T Consensus 642 ~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~ 683 (1113)
T 2xt6_A 642 TQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQ 683 (1113)
T ss_dssp TCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 778888899878999999999999999999999999999876
|
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-58 Score=491.81 Aligned_cols=296 Identities=17% Similarity=0.201 Sum_probs=242.8
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC------CCCEEE
Q 018967 45 FTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSII 118 (348)
Q Consensus 45 ~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~------~~D~i~ 118 (348)
|...++|.+ .+.+|+|+++++|+.|+++|.||+++..+|++||..| +.|||++++|+..+++ ++|+|+
T Consensus 183 w~~~~~e~~--~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~----~~G~Ea~i~g~~~~~~~a~~~g~~D~v~ 256 (933)
T 2jgd_A 183 WIQQRIESG--RATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFS----LEGGDALIPMLKEMIRHAGNSGTREVVL 256 (933)
T ss_dssp HHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCC----CTTCTTHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----CCCchHHHHHHHHHHHHHhhCCCCCEEe
Confidence 888888864 5789999999999999999999999999999988533 5899999999766654 799999
Q ss_pred c-CCcchHHHHh--cCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCC----------CccCCCccccchhHHHHHHHHH
Q 018967 119 T-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDS----------GFYGGHGIVGAQIPLGCGLAFA 185 (348)
Q Consensus 119 ~-~yR~~~~~l~--~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~----------~~~~~~g~lG~~lp~A~G~A~A 185 (348)
+ +||||+++|+ +|+++.++|+|++|+.++.+.|++.++|++.... ++.+++|++|+++|+|+|+|+|
T Consensus 257 g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A 336 (933)
T 2jgd_A 257 GMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRA 336 (933)
T ss_dssp ECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHH
Confidence 7 8999999999 9999999999999999887767777889886432 2357789999999999999999
Q ss_pred HHhCC-----CCcEEEEEeCCccc-cchhHHHHHHHHHHCCCC---eEEEEecCCccccc-ccccccCCchHHhh--cCC
Q 018967 186 QKYSK-----DETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGT-AEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 186 ~k~~~-----~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vI~Vv~NN~~~i~~-~~~~~~~~~~~~~~--g~g 253 (348)
.|+++ .+.++||++|||++ ++|.+||+||+|+.|++| +||||+||+|+|++ +...+...+++.++ ++|
T Consensus 337 ~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~~~~~~a~a~g 416 (933)
T 2jgd_A 337 RLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQ 416 (933)
T ss_dssp HHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------CGGGGGGTTT
T ss_pred HHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccchhHHHHHHHcC
Confidence 99884 67899999999998 999999999999999999 99999999999999 77755544555554 599
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcC
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHD 332 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g 332 (348)
+|+++|||+|+++|++++++|++++|+ ++|+|||+.|||++||+++|+++ ||+++|++.|++.+||+.+|+++|+++|
T Consensus 417 ~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~-yr~~~e~~~~~~~~dPi~~~~~~Li~~G 495 (933)
T 2jgd_A 417 APIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPS-ATQPLMYQKIKKHPTPRKIYADKLEQEK 495 (933)
T ss_dssp CCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------------CCTTHHHHHTSCCHHHHHHHHHHTTT
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchh-hCCHHHHHHHHccCCHHHHHHHHHHHcC
Confidence 999999999999999999999999998 99999999999999999999975 9999999999966899999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 018967 333 LATEKELKVFIQLVY 347 (348)
Q Consensus 333 ~~t~~el~~i~~~~~ 347 (348)
++|++++++++++++
T Consensus 496 v~t~~~~~~i~~~~~ 510 (933)
T 2jgd_A 496 VATLEDATEMVNLYR 510 (933)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999999876
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-32 Score=282.98 Aligned_cols=233 Identities=18% Similarity=0.154 Sum_probs=175.6
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEE--cCCc
Q 018967 46 TSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSII--TAYR 122 (348)
Q Consensus 46 ~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~--~~yR 122 (348)
...+++.|.+...++.++|.++++.| |.+...+. ++..|+++++.|+|++.+++...++ ++|+++ ..||
T Consensus 10 ~l~~i~~p~d~~~l~~~~l~~l~~~i---R~~~~~~~-----~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~ 81 (621)
T 2o1s_A 10 TLALVDSTQELRLLPKESLPKLCDEL---RRYLLDSV-----SRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQ 81 (621)
T ss_dssp TGGGCSSHHHHTTSCGGGHHHHHHHH---HHHHHHHS-----CGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTT
T ss_pred hhhhcCChHHhhhCCHHHHHHHHHHH---HHHHHHHH-----hhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchH
Confidence 35677778888899999999999887 66554332 2357999999999999999999999 899988 6899
Q ss_pred chHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCC-C-CCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeC
Q 018967 123 DHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKK-D-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYG 200 (348)
Q Consensus 123 ~~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~-~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~G 200 (348)
++++.+.+|. .+ ++.. .+..+|.+++..+ + .+...++|++|+++|+|+|+|+|.|+++++++|||++|
T Consensus 82 ~y~~~~l~G~-~~----~~~~-----~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~G 151 (621)
T 2o1s_A 82 AYPHKILTGR-RD----KIGT-----IRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIG 151 (621)
T ss_dssp CHHHHHTTTT-GG----GGGG-----TTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEE
T ss_pred HHHHHHHhCC-Hh----hhhc-----ccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEc
Confidence 9999998887 11 1210 1111222222221 0 12334699999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCC----------------------------------ch
Q 018967 201 DGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKS----------------------------------PS 246 (348)
Q Consensus 201 DGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~----------------------------------~~ 246 (348)
||++++|.++|+||+|+.|++|+||||+||+|+++++...+... .+
T Consensus 152 DG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~ 231 (621)
T 2o1s_A 152 DGAITAGMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEE 231 (621)
T ss_dssp TTGGGSHHHHHHHHHHHHHCCSEEEEEEECC-------------------------------------------------
T ss_pred hhhhhccHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999999999999999999999999988765431100 01
Q ss_pred H-------Hh--hcCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018967 247 Y-------YK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 247 ~-------~~--~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (348)
+ .+ .++|++++ +|||+|+.++.+++++|++. ++|+|||+.|+|++||+..
T Consensus 232 ~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~---~gP~lI~v~t~kg~G~~~~ 291 (621)
T 2o1s_A 232 HIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDL---KGPQFLHIMTKKGRGYEPA 291 (621)
T ss_dssp -------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHS---CSEEEEEEECCCTTCCCCC
T ss_pred HhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHHc---CCCEEEEEEEecccCCChh
Confidence 1 12 35888888 99999999999999998763 8999999999999999854
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=276.61 Aligned_cols=230 Identities=17% Similarity=0.127 Sum_probs=177.6
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEEcCCcchH
Q 018967 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIITAYRDHC 125 (348)
Q Consensus 47 ~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~~~yR~~~ 125 (348)
...|+.|.+...++.++|.++|+.| |.+... .+. +..|+++++.|+-.+.+++...++ ++|+++.. |||+
T Consensus 13 l~~i~~p~d~~~l~~~~l~~l~~~i---R~~~~~---~~~--~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~ 83 (629)
T 2o1x_A 13 LDQIHGPKDLKRLSREQLPALTEEL---RGEIVR---VCS--RGGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQ 83 (629)
T ss_dssp GGGCSSHHHHTTSCGGGHHHHHHHH---HHHHHH---HHT--TSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTT
T ss_pred hhhCCChhhhhhCCHHHHHHHHHHH---HHHHHH---HHH--hcCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchH
Confidence 4667777788889999999999988 654432 232 257999999999777777766678 89999988 8986
Q ss_pred ---HHHhcCC-CHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCC
Q 018967 126 ---TFLGRGG-TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGD 201 (348)
Q Consensus 126 ---~~l~~G~-~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GD 201 (348)
+.+..|. +....+.++.|. +|+..++. ++ ++..++|++|+++|+|+|+|+|.|+++++++|||++||
T Consensus 84 ~y~~~~l~G~~~~~~~~r~~~g~-~G~p~~~~-s~-------~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GD 154 (629)
T 2o1x_A 84 AYAHKILTGRRDQMADIKKEGGI-SGFTKVSE-SE-------HDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGD 154 (629)
T ss_dssp CHHHHHTTTTGGGGGGTTSTTSC-CSSCCGGG-CT-------TCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEET
T ss_pred HHHHHHHhCcHhHHhCcccCCCC-CCCCCCCC-CC-------CCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEch
Confidence 5666665 222234444442 23333221 22 34567899999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccC--------------------------C---------ch
Q 018967 202 GAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK--------------------------S---------PS 246 (348)
Q Consensus 202 Ga~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~--------------------------~---------~~ 246 (348)
|++++|.++|+||+|+.|++|+||||+||+|+++++...+.. . ++
T Consensus 155 G~~~~G~~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d 234 (629)
T 2o1x_A 155 GSLTGGMALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKN 234 (629)
T ss_dssp TGGGSHHHHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHHHC------------------------------------
T ss_pred hhhhccHHHHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 999999999999999999999999999999998775532100 0 03
Q ss_pred HH---------h--hcCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018967 247 YY---------K--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (348)
Q Consensus 247 ~~---------~--~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (348)
+. + .++|++++ +|||+|+.++.+++++|++ .++|+|||+.|++++||+
T Consensus 235 ~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~---~~~P~lI~v~t~kg~G~~ 294 (629)
T 2o1x_A 235 STRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD---LDGPTILHIVTTKGKGLS 294 (629)
T ss_dssp ---------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT---SSSEEEEEEECCTTTTCH
T ss_pred HHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh---cCCCEEEEEEEecCCCCC
Confidence 21 3 35899999 9999999999999988764 289999999999999997
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=244.47 Aligned_cols=236 Identities=18% Similarity=0.169 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHh--cCCC-------CCEE-Ec-CCcc---hHHHHhcCC--CH
Q 018967 71 MATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEA--GITK-------KDSI-IT-AYRD---HCTFLGRGG--TL 134 (348)
Q Consensus 71 M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~--~l~~-------~D~i-~~-~yR~---~~~~l~~G~--~~ 134 (348)
...+|.+-..+...... |+.-++.|.--+.+++.. .+++ .|.+ ++ .|-+ +.+.+..|. +.
T Consensus 12 a~~iR~~~~~~v~~a~~----GH~g~~l~~~~i~~~L~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~~ 87 (680)
T 1gpu_A 12 VSTIRILAVDTVSKANS----GHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDLSI 87 (680)
T ss_dssp HHHHHHHHHHHHHHHTC----SCCHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSCCH
T ss_pred HHHHHHHHHHHHHHcCC----CccCCchhHHHHHHHHHHhCCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCCCH
Confidence 34566655444332222 332335566556665554 3443 5765 44 4655 444444555 34
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCC----------CCcEEEEEeCCccc
Q 018967 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAA 204 (348)
Q Consensus 135 ~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~~~GDGa~ 204 (348)
+++. . +.+.. |+ -+.|......++...+|++|+++|.|+|+|+|.++.+ .+++|||++|||++
T Consensus 88 ~~l~-~-~r~~g----~~-~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~ 160 (680)
T 1gpu_A 88 EDLK-Q-FRQLG----SR-TPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCL 160 (680)
T ss_dssp HHHT-T-TTCTT----CS-CCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHH
T ss_pred HHHH-h-hcccC----CC-CCCCCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCcc
Confidence 4321 1 11111 11 1234443345788899999999999999999998754 37899999999999
Q ss_pred cchhHHHHHHHHHHCCCC-eEEEEecCCcccccccccccCCchHHhh--cCCcceE-EEcCC-CHHHHHHHHHHHHHHhc
Q 018967 205 NQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGM-DALAVKQACKFAKEHAL 279 (348)
Q Consensus 205 ~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~-~VDG~-D~~av~~a~~~A~~~ar 279 (348)
++|.+||++|+|+.|+|| +|+||+||+|+++++..... .+++.++ +||++++ +|||| |+.++.+|+++|++ .
T Consensus 161 ~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~--~ 237 (680)
T 1gpu_A 161 QEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL--S 237 (680)
T ss_dssp HSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH--C
T ss_pred chhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH--C
Confidence 999999999999999999 88999999999988766543 4577764 5899999 99999 99999999999986 1
Q ss_pred cCCCEEEEEEEecCCCCCCCCCC---CCCCCHHHHHHHHhcCCHH
Q 018967 280 KNGPMILEMDTYRYHGHSMSDPG---STYRTRDEISGVRQERDPI 321 (348)
Q Consensus 280 ~~gP~lIe~~t~R~~GHs~~D~~---~~YR~~~e~~~~~~~~DPi 321 (348)
.++|+||+++|+|++||++.|+. ..||+++|+++|++ ++++
T Consensus 238 ~~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~-~~~~ 281 (680)
T 1gpu_A 238 KDKPTLIKMTTTIGYGSLHAGSHSVHGAPLKADDVKQLKS-KFGF 281 (680)
T ss_dssp TTSCEEEEEECCTTTTSTTTTSGGGSSSCCCHHHHHHHHH-HTTC
T ss_pred CCCCEEEEEEeecccccccCCCCccCCCCCCHHHHHHHHH-HcCC
Confidence 38999999999999999988864 46999999999974 4443
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=243.22 Aligned_cols=153 Identities=22% Similarity=0.246 Sum_probs=133.8
Q ss_pred CCccCCCccccchhHHHHHHHHHHHhCC----------CCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCC
Q 018967 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (348)
Q Consensus 163 ~~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~ 231 (348)
.++..++|++|+++|.|+|+|+|.++.+ +++.|+|++|||++++|.++|++++|+.++|| +|+||+||+
T Consensus 111 ~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~ 190 (651)
T 2e6k_A 111 PGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNR 190 (651)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECC
T ss_pred CCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCC
Confidence 3778899999999999999999998765 68899999999999999999999999999999 889999999
Q ss_pred cccccccccccCCchHHhh--cCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCC---
Q 018967 232 YGMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTY--- 305 (348)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~Y--- 305 (348)
|+++++..... .+++.++ +||++++ +|||||+.++.+|+++|++ .++|+||+++|+|++||++.|+ ..|
T Consensus 191 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~---~~~P~lI~~~t~kg~G~~~~~~-~~~H~~ 265 (651)
T 2e6k_A 191 ISIDGPTDLAF-TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL---DERPTLIAVRSHIGFGSPKQDS-AKAHGE 265 (651)
T ss_dssp EETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH---SSSCEEEEEECCTTTTSTTTTS-GGGTSS
T ss_pred ccccccccccc-CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH---CCCCEEEEEEeEeccccccccc-cccccc
Confidence 99988776554 5677764 5999999 9999999999999999886 4899999999999999995554 344
Q ss_pred -CCHHHHHHHHhcCCHH
Q 018967 306 -RTRDEISGVRQERDPI 321 (348)
Q Consensus 306 -R~~~e~~~~~~~~DPi 321 (348)
++++|+++|+ +++|+
T Consensus 266 ~~~~~e~~~~~-~~~~~ 281 (651)
T 2e6k_A 266 PLGPEAVEATR-RNLGW 281 (651)
T ss_dssp CCHHHHHHHHH-HHHTC
T ss_pred CCCHHHHHHHH-HHcCC
Confidence 6889999997 46665
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-26 Score=238.68 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=127.1
Q ss_pred CccCCCccccchhHHHHHHHHHHHhC-------------CCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEec
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYS-------------KDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCEN 229 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~-------------~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~N 229 (348)
++..++|++|+++|+|+|+|+|.|+. +.+++|+|++|||++++|++|||+|+|+.|+|| +|+||+|
T Consensus 127 gv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~ 206 (700)
T 3rim_A 127 GVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDR 206 (700)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred CccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEEC
Confidence 67788999999999999999999974 567899999999999999999999999999998 8999999
Q ss_pred CCcccccccccccCCchHHhh--cCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC---
Q 018967 230 NHYGMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS--- 303 (348)
Q Consensus 230 N~~~i~~~~~~~~~~~~~~~~--g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~--- 303 (348)
|+|+++++..... ..++.++ +||+++++| ||||+.+|++|+++|++. .++|+||+++|+|++||+......
T Consensus 207 N~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~~--~~~P~lI~~~T~kG~G~~~~e~~~~~H 283 (700)
T 3rim_A 207 NQISIEDDTNIAL-CEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQAV--TDRPSFIALRTVIGYPAPNLMDTGKAH 283 (700)
T ss_dssp CSEETTEEGGGTC-CCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTCTTTTTSHHHH
T ss_pred CCcccccchhhcc-chhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHHc--CCCCEEEEEEEEeeecCCccCCCcccc
Confidence 9999998876544 4566664 589999999 999999999999999861 389999999999999998654321
Q ss_pred -CCCCHHHHHHHH
Q 018967 304 -TYRTRDEISGVR 315 (348)
Q Consensus 304 -~YR~~~e~~~~~ 315 (348)
.--++||++.++
T Consensus 284 g~~~~~e~~~~~~ 296 (700)
T 3rim_A 284 GAALGDDEVAAVK 296 (700)
T ss_dssp HSCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 124667776554
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-26 Score=236.55 Aligned_cols=151 Identities=23% Similarity=0.232 Sum_probs=131.9
Q ss_pred CCccCCCccccchhHHHHHHHHHHHhCC----------CCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCC
Q 018967 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (348)
Q Consensus 163 ~~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~ 231 (348)
.++..++|++|+++|.|+|+|+|.++.+ .++.|||++|||++++|.++|++++|+.++|| +|+||+||+
T Consensus 107 ~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~ 186 (669)
T 2r8o_A 107 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG 186 (669)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 3788899999999999999999998654 37899999999999999999999999999999 889999999
Q ss_pred cccccccccccCCchHHhh--cCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC-CCCC---CC
Q 018967 232 YGMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM-SDPG---ST 304 (348)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~-~D~~---~~ 304 (348)
|+++.+..... .+++.++ +||++++ +|||||+.++.+|+++|++. .++|+||+++|+|..||+. .|+. ..
T Consensus 187 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~--~~~P~lI~~~T~kg~G~~~~~~~~~~H~~ 263 (669)
T 2r8o_A 187 ISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV--TDKPSLLMCKTIIGFGSPNKAGTHDSHGA 263 (669)
T ss_dssp EETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTCTTTTTSGGGTSS
T ss_pred cEecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHhc--CCCCEEEEEEeEeccCcCCcCCCCcccCC
Confidence 99988766443 4577664 5999999 99999999999999999861 3899999999999999994 5543 46
Q ss_pred CCCHHHHHHHHh
Q 018967 305 YRTRDEISGVRQ 316 (348)
Q Consensus 305 YR~~~e~~~~~~ 316 (348)
||+++|++.|++
T Consensus 264 ~~~~ee~~~~~~ 275 (669)
T 2r8o_A 264 PLGDAEIALTRE 275 (669)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999998874
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=235.95 Aligned_cols=150 Identities=21% Similarity=0.235 Sum_probs=131.9
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCC----------CCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|++|+++|.|+|+|+|.++.+ .+++|+|++|||++++|.+||++++|+.|+|| +|+||+||+|
T Consensus 110 gv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~ 189 (673)
T 1r9j_A 110 GVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYI 189 (673)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSB
T ss_pred CeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCC
Confidence 677889999999999999999998764 58899999999999999999999999999999 8899999999
Q ss_pred ccccccccccCCchHHhh--cCCcceE-EEcC-CCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCC---CCC
Q 018967 233 GMGTAEWRAAKSPSYYKR--GDYVPGL-KVDG-MDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPG---STY 305 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~--g~gipg~-~VDG-~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~---~~Y 305 (348)
+++++..... ..++.++ +||++++ .||| +|+.++++|+++|++. .++|+||+++|+|++||++.|.. ..+
T Consensus 190 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~--~~~P~lI~~~T~kg~G~~~~~~~~~H~~~ 266 (673)
T 1r9j_A 190 SIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKAT--KGKPKMIVQTTTIGFGSSKQGTEKVHGAP 266 (673)
T ss_dssp CSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTSTTTTSGGGTSSC
T ss_pred ccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHc--CCCCEEEEEecccccccccCCCcccccCC
Confidence 9988776655 5677764 5999999 9999 9999999999998861 38999999999999999966652 246
Q ss_pred CCHHHHHHHHh
Q 018967 306 RTRDEISGVRQ 316 (348)
Q Consensus 306 R~~~e~~~~~~ 316 (348)
++++|++.+++
T Consensus 267 ~~~ee~~~~~~ 277 (673)
T 1r9j_A 267 LGEEDIANIKA 277 (673)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 89999998874
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-25 Score=230.25 Aligned_cols=245 Identities=19% Similarity=0.171 Sum_probs=168.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHH---hcCC-------CCCEE-Ec-CCc
Q 018967 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGME---AGIT-------KKDSI-IT-AYR 122 (348)
Q Consensus 55 ~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~---~~l~-------~~D~i-~~-~yR 122 (348)
....|+.++|.++ ...+|.+-..+...... |+.-++.|.--+.+.+. ..++ +.|.+ ++ .|-
T Consensus 7 ~~~~l~~~~l~~~---a~~iR~~~~~~v~~a~~----GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~ 79 (675)
T 1itz_A 7 QGKAATGELLEKS---VNTIRFLAIDAVEKANS----GHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHG 79 (675)
T ss_dssp ---CCCHHHHHHH---HHHHHHHHHHHHHHHTC----SCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGG
T ss_pred ccCCCCHHHHHHH---HHHHHHHHHHHHHHcCC----CccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcch
Confidence 4467888888764 44667655444443222 33233556555555554 2333 24654 45 465
Q ss_pred c---hHHHHhcCC---CHHHHHHHHhCCCCCCCCCCCCCcCCCCC-CCCccCCCccccchhHHHHHHHHHHHhCC-----
Q 018967 123 D---HCTFLGRGG---TLLEVFSELMGRKDGCSHGKGGSMHFYKK-DSGFYGGHGIVGAQIPLGCGLAFAQKYSK----- 190 (348)
Q Consensus 123 ~---~~~~l~~G~---~~~~~~ael~g~~~g~~~G~ggs~h~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~k~~~----- 190 (348)
+ +.+.+..|. +.+++ .. +.+.. ++ -+.|.... ..++..++|++|+++|.|+|+|+|.++.+
T Consensus 80 ~~~lYa~l~l~G~~~~~~~~l-~~-~r~~~----~~-~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~ 152 (675)
T 1itz_A 80 CMLQYALLHLAGYDSVKEEDL-KQ-FRQWG----SR-TPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNK 152 (675)
T ss_dssp HHHHHHHHHHHTCTTCCHHHH-TT-TTSTT----CS-SCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCB
T ss_pred HHHHHHHHHHcCCCCCCHHHH-Hh-cccCC----CC-CCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccc
Confidence 5 444444554 32321 11 11110 11 01232211 13677889999999999999999998765
Q ss_pred -----CCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcccccccccccCCchHHhh--cCCcceE-EEcC
Q 018967 191 -----DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGL-KVDG 261 (348)
Q Consensus 191 -----~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~-~VDG 261 (348)
+++.|||++|||++++|.+||++++|+.++|| +|+||+||+|+|+.+..... .+++.++ +||++++ +|||
T Consensus 153 ~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG 231 (675)
T 1itz_A 153 PDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNG 231 (675)
T ss_dssp TTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCT
T ss_pred cccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHhCCCEEEEEecC
Confidence 78899999999999999999999999999995 88999999999988766544 5677764 5999999 9999
Q ss_pred C-CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC----CCCCHHHHHHHHh
Q 018967 262 M-DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS----TYRTRDEISGVRQ 316 (348)
Q Consensus 262 ~-D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~----~YR~~~e~~~~~~ 316 (348)
| |+.++.+|+++|++. .++|+||+++|+|.+||+...++. .+.+++|++++++
T Consensus 232 ~~d~~~l~~al~~a~~~--~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~e~~~~~~~ 289 (675)
T 1itz_A 232 NTGYDDIRAAIKEAKAV--TDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQ 289 (675)
T ss_dssp TTCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--CCCeEEEEEeeecccCcccccCcccccCCCCCHHHHHHHHH
Confidence 9 999999999998862 389999999999999998643321 3567888877763
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-24 Score=222.09 Aligned_cols=143 Identities=22% Similarity=0.319 Sum_probs=119.7
Q ss_pred cCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCC-CcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcc
Q 018967 156 MHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYG 233 (348)
Q Consensus 156 ~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~-~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~ 233 (348)
.|......++..++|++|+++|+|+|+|+|.++.+. ++.|||++|||++++|.+||++|+|+.|+|| +|+|++||+|+
T Consensus 107 ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~ 186 (616)
T 3mos_A 107 GHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLG 186 (616)
T ss_dssp SSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBC
T ss_pred CCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCC
Confidence 344333335556899999999999999999986554 6899999999999999999999999999999 67889999999
Q ss_pred cccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC
Q 018967 234 MGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS 303 (348)
Q Consensus 234 i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~ 303 (348)
++.+.......+++.++ +||+++++|||||+.++.++++.+ .++|+||+++|+|++||+..+++.
T Consensus 187 i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~-----~~~P~lI~v~T~kg~G~~~~e~~~ 253 (616)
T 3mos_A 187 QSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA-----KHQPTAIIAKTFKGRGITGVEDKE 253 (616)
T ss_dssp SSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC-----CSSCEEEEEECCTTTTSTTTTTCS
T ss_pred CcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc-----CCCCEEEEEEEecccccccccCch
Confidence 98876655545677664 599999999999999999998543 389999999999999998776554
|
| >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-24 Score=229.70 Aligned_cols=264 Identities=16% Similarity=0.059 Sum_probs=170.4
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--hcccccccccCCChhHHHHHH-HHhcCC------CC
Q 018967 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLY--KAKLVRGFCHLYDGQEAVAIG-MEAGIT------KK 114 (348)
Q Consensus 44 ~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~--~~g~~~gf~h~~~GqEa~~vg-~~~~l~------~~ 114 (348)
|| ...|..|.+.....+.+|.+-+. ..+|.+-..+...- +.+++.|+.-++.|.--+.+. ....++ ++
T Consensus 58 ~~-l~~i~~~~~~~~p~d~~l~~~la--~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~ 134 (886)
T 2qtc_A 58 NY-INTIPVEEQPEYPGNLELERRIR--SAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGG 134 (886)
T ss_dssp CS-SCSSCGGGCCCCCSCHHHHHHHH--HHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCC
T ss_pred ch-hhhCCCccccCCCchHHHHHHHH--HHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 44 34554444444444556653333 34555443333321 223445544444554444433 344467 57
Q ss_pred CEEEc-CCcc---hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCC--CCCccCCCccccchhHHHHHHHHHHHh
Q 018967 115 DSIIT-AYRD---HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKK--DSGFYGGHGIVGAQIPLGCGLAFAQKY 188 (348)
Q Consensus 115 D~i~~-~yR~---~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~--~~~~~~~~g~lG~~lp~A~G~A~A~k~ 188 (348)
|+|+. .|-+ +++.+..|.-..+-|..+ -+. +...|- +.|.... ..++..++|++|.+++.|+|+|+|.|+
T Consensus 135 D~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~~f-Rq~-~~~~gl--~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~ 210 (886)
T 2qtc_A 135 DLVYFQGHISPGVYARAFLEGRLTQEQLDNF-RQE-VHGNGL--SSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKY 210 (886)
T ss_dssp CEEECCGGGHHHHHHHHHHTTSSCHHHHTTB-TCC-TTSSCB--CSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHH
T ss_pred CEEEEcchhHHHHHHHHHHhCCCCHHHHHhc-cCC-CCCCCC--CCCCCcccCCCcccccccccCccHHHHHHHHHHhhh
Confidence 87777 4666 455556675322222221 111 111111 2222111 113677899999999999999999998
Q ss_pred -------CCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCccccccccccc-CCchHHh--hcCCcceE
Q 018967 189 -------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA-KSPSYYK--RGDYVPGL 257 (348)
Q Consensus 189 -------~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~~-~~~~~~~--~g~gipg~ 257 (348)
++.++.|||++|||++++|.+|||+|+|+.++|+ +||||+||+++++.+..... ...++.+ +++|.+.+
T Consensus 211 l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~ 290 (886)
T 2qtc_A 211 LEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVI 290 (886)
T ss_dssp HHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEE
T ss_pred hcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEE
Confidence 7889999999999999999999999999999997 89999999999988765421 2234444 35788888
Q ss_pred EE---------------------------------------------------------------------cCCCHHHHH
Q 018967 258 KV---------------------------------------------------------------------DGMDALAVK 268 (348)
Q Consensus 258 ~V---------------------------------------------------------------------DG~D~~av~ 268 (348)
+| ||||+.+|+
T Consensus 291 ~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~ 370 (886)
T 2qtc_A 291 KVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIY 370 (886)
T ss_dssp EECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHH
T ss_pred EEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHH
Confidence 87 799999999
Q ss_pred HHHHHHHHHhccCCCEEEEEEEecCCCCCC--CCCCC----CCCCHHHHHHHHh
Q 018967 269 QACKFAKEHALKNGPMILEMDTYRYHGHSM--SDPGS----TYRTRDEISGVRQ 316 (348)
Q Consensus 269 ~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~--~D~~~----~YR~~~e~~~~~~ 316 (348)
+|+++|+++ .++|+||+++|+|++||+. .++.. .|++.+|++.|++
T Consensus 371 ~a~~~A~~~--~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~ 422 (886)
T 2qtc_A 371 AAFKKAQET--KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRD 422 (886)
T ss_dssp HHHHHHHHC--CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHH
T ss_pred HHHHHHHHc--CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHH
Confidence 999999874 3699999999999999973 33322 2889999998874
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-24 Score=223.83 Aligned_cols=148 Identities=20% Similarity=0.241 Sum_probs=120.0
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCC----------CcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~----------~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|++|+++|+|+|+|+|.++.+. ++.|+|++|||++++|.++|++++|+.|+|| +|+||+||+|
T Consensus 110 gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~ 189 (663)
T 3kom_A 110 GVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNI 189 (663)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-
T ss_pred CcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 5677899999999999999999987543 7899999999999999999999999999999 7899999999
Q ss_pred ccccccccccCCchHHhh--cCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC--CC--
Q 018967 233 GMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS--TY-- 305 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~--~Y-- 305 (348)
+++++..... .+++.++ +||++++ +|||||+.++.+|+++|++. .++|+||+++|+|++||+...+.. ++
T Consensus 190 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~--~~~P~lI~~~T~kg~G~~~~e~~~~~Hg~~ 266 (663)
T 3kom_A 190 SIDGDTKGWF-SDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQ--QQKPTLICCKTVIGFGSPEKAGTASVHGSP 266 (663)
T ss_dssp ----CGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC--SSSCEEEEEECCTTTTCTTTTTCSSTTSSC
T ss_pred ccccchhhhc-chhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhc--CCCCEEEEEecccccccCCCCCCccccCCC
Confidence 9988766543 4577764 5999999 99999999999999988762 389999999999999998654322 22
Q ss_pred CCHHHHHHH
Q 018967 306 RTRDEISGV 314 (348)
Q Consensus 306 R~~~e~~~~ 314 (348)
-++||++..
T Consensus 267 l~~e~~~~~ 275 (663)
T 3kom_A 267 LSDQERASA 275 (663)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 256666654
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-24 Score=221.65 Aligned_cols=236 Identities=17% Similarity=0.168 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC---------CCCEEEc--CCcc---hHH
Q 018967 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT---------KKDSIIT--AYRD---HCT 126 (348)
Q Consensus 61 ~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~---------~~D~i~~--~yR~---~~~ 126 (348)
.+++.++ ...+|.+=..+...-.. |+.-++.|.--+.+.+...|+ +.|.++- .|-+ +.+
T Consensus 3 ~~~l~~~---a~~iR~~~i~~v~~a~~----GH~g~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~ 75 (632)
T 3l84_A 3 IQILQEQ---ANTLRFLSADMVQKANS----GHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSF 75 (632)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHTC----SCCHHHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHhcCC----CCCCcChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHH
Confidence 3444443 34566554444332222 332235566666666655564 4676554 4666 444
Q ss_pred HHhcCC--CHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCC-------CcEEEE
Q 018967 127 FLGRGG--TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKD-------ETVTFA 197 (348)
Q Consensus 127 ~l~~G~--~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~-------~~~vv~ 197 (348)
....|. +.+++. . +.+..+.+ +.|.-....++..++|++|+++|.|+|+|+|.++.+. ++.|+|
T Consensus 76 l~l~G~~~~~~~l~-~-~r~~~s~~-----~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~ 148 (632)
T 3l84_A 76 LHLSGYDLSLEDLK-N-FRQLHSKT-----PGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYC 148 (632)
T ss_dssp HHHHTCSCCHHHHT-T-TTCTTCSS-----CSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEE
T ss_pred HHHhCCCCCHHHHH-H-HhcCCCCC-----CCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEE
Confidence 444554 444421 1 11111111 1233222246778899999999999999999997653 889999
Q ss_pred EeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHH
Q 018967 198 LYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFA 274 (348)
Q Consensus 198 ~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A 274 (348)
++|||++++|.++|++++|+.|+|| +|+|++||+|+++.+..... .+++.++ +||+++++|||||+.++.+|+++|
T Consensus 149 v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A 227 (632)
T 3l84_A 149 LCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAF-NENVKMRFEAQGFEVLSINGHDYEEINKALEQA 227 (632)
T ss_dssp EEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHH
T ss_pred EECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccchhhhc-ChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHH
Confidence 9999999999999999999999999 78999999999988765543 4567664 599999999999999999999887
Q ss_pred HHHhccCCCEEEEEEEecCCCCCCCCCCC--CC--CCHHHHHHH
Q 018967 275 KEHALKNGPMILEMDTYRYHGHSMSDPGS--TY--RTRDEISGV 314 (348)
Q Consensus 275 ~~~ar~~gP~lIe~~t~R~~GHs~~D~~~--~Y--R~~~e~~~~ 314 (348)
++ .++|+||+++|+|++||+...+.. ++ -++||++..
T Consensus 228 ~~---~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~ 268 (632)
T 3l84_A 228 KK---STKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKA 268 (632)
T ss_dssp HT---CSSCEEEEEECCTTTTCGGGTTCGGGSSSCCCHHHHHHH
T ss_pred Hh---CCCCEEEEEeeEeeecCCCCCCcccccCCCCCHHHHHHH
Confidence 64 389999999999999998643321 22 245666554
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-24 Score=224.86 Aligned_cols=148 Identities=22% Similarity=0.255 Sum_probs=113.6
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCC----------CcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~----------~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|++|+++|.|+|+|+|.++.+. ++.|||++|||++++|.++|++++|+.++|| +|+||+||+|
T Consensus 149 gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~ 228 (711)
T 3uk1_A 149 GVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGI 228 (711)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred CcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCc
Confidence 6677899999999999999999987543 7899999999999999999999999999999 8899999999
Q ss_pred ccccccccccCCchHHhh--cCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCC---
Q 018967 233 GMGTAEWRAAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYR--- 306 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~YR--- 306 (348)
+++.+..... .+++.++ +||+++++ |||||+.++.+|+++|++ .++|+||+++|+|++||+...++..|.
T Consensus 229 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~---~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~ 304 (711)
T 3uk1_A 229 SIDGDVVNWF-HDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR---SDKPSLICCKTRIGNGAATKAGGHDVHGAP 304 (711)
T ss_dssp ETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTT---CSSCEEEEEEC-------------------
T ss_pred ccccchhhhc-CCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHh---CCCCEEEEEccccccCCCCCCCcccccCCC
Confidence 9988766543 4677764 59999998 899999999999988754 389999999999999998644333232
Q ss_pred -CHHHHHHHH
Q 018967 307 -TRDEISGVR 315 (348)
Q Consensus 307 -~~~e~~~~~ 315 (348)
++||++..+
T Consensus 305 l~~e~~~~~~ 314 (711)
T 3uk1_A 305 LGADEIAKTR 314 (711)
T ss_dssp -CHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 456665543
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-23 Score=218.64 Aligned_cols=149 Identities=25% Similarity=0.282 Sum_probs=123.7
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCC----------CcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~----------~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|++|+++|.|+|+|+|.++.+. ++.|+|++|||++++|.++|++++|+.++|| +|+|++||+|
T Consensus 134 gv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~ 213 (690)
T 3m49_A 134 GVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDI 213 (690)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSB
T ss_pred ccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCe
Confidence 5667899999999999999999986542 7899999999999999999999999999998 7899999999
Q ss_pred ccccccccccCCchHHhh--cCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCC----
Q 018967 233 GMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTY---- 305 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~--g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~Y---- 305 (348)
+++.+..... .+++.++ +||+++++| ||+|+.++.+|+++|++. .++|+||+++|+|.+|++...++..|
T Consensus 214 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~--~~~P~lI~v~T~kG~G~~~~~~~~~~Hg~~ 290 (690)
T 3m49_A 214 SLDGDLNRSF-SESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKAD--EKRPTLIEVRTTIGFGSPNKSGKSASHGSP 290 (690)
T ss_dssp CSSSBGGGTC-CCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTCTTTTTSGGGTSSC
T ss_pred ecccchhhcc-chhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhc--CCCCEEEEEEeecccccCcccCcccccCCC
Confidence 9988765443 4566664 589999999 999999999999888751 28999999999999999854433212
Q ss_pred CCHHHHHHHH
Q 018967 306 RTRDEISGVR 315 (348)
Q Consensus 306 R~~~e~~~~~ 315 (348)
-++||++..+
T Consensus 291 ~~~e~~~~~~ 300 (690)
T 3m49_A 291 LGVEETKLTK 300 (690)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 2566666554
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-23 Score=213.52 Aligned_cols=162 Identities=17% Similarity=0.221 Sum_probs=125.9
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc--------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-------- 238 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-------- 238 (348)
+.|++|+++|.|+|++++. +++.|||++|||+++++ +++|++|+.+++|+++||.||+ |++.+..
T Consensus 418 ~~g~~G~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~ 491 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQND 491 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSC
T ss_pred ccccccchhHHHhhHHHhC----CCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCC
Confidence 4689999999999999985 57899999999999986 5669999999999988887776 8863211
Q ss_pred --ccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE---ecCCCCCCCCCCCCCCCHH--
Q 018967 239 --WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT---YRYHGHSMSDPGSTYRTRD-- 309 (348)
Q Consensus 239 --~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t---~R~~GHs~~D~~~~YR~~~-- 309 (348)
......+||.++ +||+++++|| ++.++.+++++|++ ...+||+|||+.| +|+.+|...|+++.||..+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~-~~~~gP~lIev~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (603)
T 4feg_A 492 FIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA-IAQHEPVLIDAVITGDRPLPAEKLRLDSAMSSAADIE 568 (603)
T ss_dssp CCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH-HTTTSCEEEEEECCCCCCCCTTSCCCCTTTSCHHHHH
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH-hcCCCcEEEEEEeCCCCCCCcccchhhhhhhhHHHHH
Confidence 112234678875 5999999998 45678888888763 1138999999999 6677899999888898665
Q ss_pred HHHHHHhcCCHHHHHHHHHHHcCCCCHHHH
Q 018967 310 EISGVRQERDPIERIRKLILAHDLATEKEL 339 (348)
Q Consensus 310 e~~~~~~~~DPi~~~~~~L~~~g~~t~~el 339 (348)
|..+|. ++||+.+|+++|.++|++++++.
T Consensus 569 ~~~~~~-~~d~~~~~~~~l~~~g~~~~~~~ 597 (603)
T 4feg_A 569 AFKQRY-EAQDLQPLSTYLKQFGLDDLQHQ 597 (603)
T ss_dssp HHHHHH-TCTTCCCHHHHHHHTTC------
T ss_pred HHHhhC-CcccCCchHHHHHHcCCchhhhh
Confidence 666665 59999999999999999998754
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-16 Score=159.88 Aligned_cols=119 Identities=16% Similarity=0.232 Sum_probs=98.3
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccccccccccc-----
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWRA----- 241 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~~~----- 241 (348)
+.|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++||.|| +|++.......
T Consensus 411 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~ 484 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNL 484 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSC
T ss_pred CCCcccChHHHHHHHHHhC----CCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCC
Confidence 5799999999999999985 57889999999999986 588999999999987776555 68887643211
Q ss_pred ----cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018967 242 ----AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (348)
Q Consensus 242 ----~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (348)
...+||.+. +||+++++|+ ++.++.+++++|++.+|.+||+|||+.|+|..
T Consensus 485 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 485 FGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp CCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred ccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCCCCCEEEEEEecccc
Confidence 134678775 5999999997 58899999999998765689999999999854
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.2e-16 Score=159.23 Aligned_cols=120 Identities=24% Similarity=0.259 Sum_probs=97.3
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~----- 240 (348)
+++|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++||.||+ |++.+....
T Consensus 439 g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 512 (616)
T 2pan_A 439 GQAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMD 512 (616)
T ss_dssp TTTCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCC
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 45799999999999999985 57899999999999886 5679999999999876666665 887543110
Q ss_pred -----------ccC----CchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 018967 241 -----------AAK----SPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (348)
Q Consensus 241 -----------~~~----~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~ 294 (348)
... ..||.+. +||+++++|+ ++.++.+++++|+++++. +||+|||+.|+|..
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 513 YCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp CSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred ccccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 011 2577774 5999999997 577999999999987776 99999999999865
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-15 Score=155.16 Aligned_cols=116 Identities=21% Similarity=0.215 Sum_probs=94.0
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccccccccc-------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~------- 239 (348)
+.|++|+++|.|+|+|+|.| ++++.|||++|||+++++ +++|++|+++++|+++||.|| +|++.....
T Consensus 417 g~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 492 (563)
T 2uz1_A 417 YLGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPN 492 (563)
T ss_dssp TTCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTT
T ss_pred CCccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCC
Confidence 46999999999999999986 568899999999999986 467999999999987666555 588765321
Q ss_pred ccc----CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 RAA----KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ~~~----~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
+.. ..+||.+. +||+++++|+ ++.++.+++++|++ .+||+|||+.|++
T Consensus 493 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~---~~gp~liev~~~~ 546 (563)
T 2uz1_A 493 RVTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALA---HNRPACINVAVAL 546 (563)
T ss_dssp CCCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH---SSSCEEEEEECCS
T ss_pred cccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH---CCCCEEEEEEecc
Confidence 111 23578774 5999999996 68899999998876 3899999999974
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-15 Score=156.12 Aligned_cols=120 Identities=14% Similarity=0.093 Sum_probs=94.2
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
++.|++|+++|.|+|+|+|.+.++.++.|||++|||+++++ +++|++|+++++|+++||.||+ |++.+...
T Consensus 410 ~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 487 (563)
T 2vk8_A 410 VLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQY 487 (563)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG
T ss_pred cchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCc
Confidence 45799999999999999999888888999999999999885 5679999999999877776555 88754321
Q ss_pred cccCCchHHhh--cCCcc---eEEEcCCCHHHHHHHHH-HHHHHhccCCCEEEEEEEec
Q 018967 240 RAAKSPSYYKR--GDYVP---GLKVDGMDALAVKQACK-FAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ~~~~~~~~~~~--g~gip---g~~VDG~D~~av~~a~~-~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.++ +||++ +++|| +++++.++++ ++++. .++|+|||+.|++
T Consensus 488 ~~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~~--~~~p~liev~~~~ 542 (563)
T 2vk8_A 488 NEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFND--NSKIRMIEVMLPV 542 (563)
T ss_dssp GCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTTS--CSSEEEEEEECCT
T ss_pred ccCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHhC--CCCcEEEEEEeCc
Confidence 11134577764 59999 99998 5778888887 55531 1479999999975
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-15 Score=154.76 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=93.1
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~------ 239 (348)
++.|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+.+++|+++||.|| +|++.....
T Consensus 417 ~g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 490 (566)
T 1ozh_A 417 NGQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQR 490 (566)
T ss_dssp CTTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSS
T ss_pred CCcccccchHHHHHHHHHhC----CCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCC
Confidence 34699999999999999985 57899999999999885 466999999999987666666 588765322
Q ss_pred ---cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 240 ---~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
.....+||.+. +||+++++|+ +++++.+++++|++ .+||+|||+.|+|.
T Consensus 491 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~liev~~~~~ 544 (566)
T 1ozh_A 491 LSGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMD---VDGPAVVAIPVDYR 544 (566)
T ss_dssp CCSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHH---SSSCEEEEEEBCCT
T ss_pred CccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCCC
Confidence 12234678774 5999999997 46788999988875 38999999999863
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-15 Score=153.63 Aligned_cols=112 Identities=30% Similarity=0.401 Sum_probs=90.7
Q ss_pred ccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc--------
Q 018967 170 GIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-------- 240 (348)
Q Consensus 170 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~-------- 240 (348)
|++|+++|.|+|+|+|. +++.|||++|||+++++ +|+|++|+.+++|+++||.||+ |++.+....
T Consensus 401 g~~G~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~ 474 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVP 474 (528)
T ss_dssp CCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCC
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcc
Confidence 99999999999999985 56789999999999987 6889999999999888776665 888654211
Q ss_pred --ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 --AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 --~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....||.+. +||+++++||+ .+++.+++++|++ .+||+|||+.|.|
T Consensus 475 ~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~al~~a~~---~~gp~liev~~~~ 525 (528)
T 1q6z_A 475 GLDVPGIDFRALAKGYGVQALKADN--LEQLKGSLQEALS---AKGPVLIEVSTVS 525 (528)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEEESS--HHHHHHHHHHHHT---CSSCEEEEEEBCC
T ss_pred cCCCCCCCHHHHHHHcCCeEEEeCC--HHHHHHHHHHHHH---CCCcEEEEEEecC
Confidence 1134578774 59999999984 6688888877764 3899999999975
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-15 Score=153.25 Aligned_cols=114 Identities=21% Similarity=0.265 Sum_probs=92.4
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------- 239 (348)
+.|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+.+++|+++||.||+ |++.....
T Consensus 434 g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 507 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRS 507 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCC
Confidence 4699999999999999985 57889999999999886 5689999999999876665554 88765421
Q ss_pred ----cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ----~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. +||+++++|+ ++.++.+++++|++ .+||+|||+.|.|
T Consensus 508 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~---~~gp~liev~~~~ 561 (573)
T 2iht_A 508 HDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE---LGRPFLIEVPVNY 561 (573)
T ss_dssp CGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT---SSSCEEEEEEBCC
T ss_pred cCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEECCC
Confidence 22234678774 5999999996 67888888888774 3899999999998
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.1e-15 Score=151.83 Aligned_cols=119 Identities=21% Similarity=0.298 Sum_probs=94.2
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~------ 239 (348)
+++|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++||.|| +|++.....
T Consensus 423 g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 496 (590)
T 1ybh_A 423 GGLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKA 496 (590)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTT
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCC
Confidence 44699999999999999985 57889999999999886 567999999999977665555 688754211
Q ss_pred ----cc--c------CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 018967 240 ----RA--A------KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (348)
Q Consensus 240 ----~~--~------~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GH 296 (348)
.. . ..+||.+. +||+++++|+ ++.++.+++++|++ .+||+|||+.|+|....
T Consensus 497 ~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~liev~~~~~~~~ 562 (590)
T 1ybh_A 497 NRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD---TPGPYLLDVICPHQEHV 562 (590)
T ss_dssp CCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH---SSSCEEEEEECCTTCCC
T ss_pred ccccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecCCccc
Confidence 00 1 13578774 5999999997 68899999988875 38999999999987643
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-15 Score=152.87 Aligned_cols=119 Identities=23% Similarity=0.322 Sum_probs=95.4
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------- 239 (348)
+.|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++||.||+ |++.....
T Consensus 422 g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 495 (589)
T 2pgn_A 422 AEGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQN 495 (589)
T ss_dssp TTCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CcchhhhHHHHHHHHHHhC----CCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCC
Confidence 4699999999999999985 57889999999999886 5889999999999876666665 88765321
Q ss_pred --cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018967 240 --RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (348)
Q Consensus 240 --~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (348)
.....+||.+. +||+++++|+. +.++.+++++|++ .+||+|||+.|+|.....
T Consensus 496 ~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~---~~gp~liev~~~~~~~~~ 552 (589)
T 2pgn_A 496 NWTEFMNPDWVGIAKAFGAYGESVRE--TGDIAGALQRAID---SGKPALIEIPVSKTQGLA 552 (589)
T ss_dssp CSCBCCCCCHHHHHHHHTCEEEECTT--TCCHHHHHHHHHH---HCSCEEEEEECCSSSSTT
T ss_pred ccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh---CCCCEEEEEEecCCCCcC
Confidence 12234678774 59999999984 5688888888875 389999999999876543
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.3e-15 Score=154.85 Aligned_cols=118 Identities=25% Similarity=0.348 Sum_probs=94.2
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~------ 239 (348)
++.|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++||.|| +|++.+...
T Consensus 510 g~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~ 583 (677)
T 1t9b_A 510 GGLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEH 583 (677)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTT
T ss_pred CCcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCC
Confidence 44689999999999999995 78899999999999885 455999999999987665555 588755321
Q ss_pred c----ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018967 240 R----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (348)
Q Consensus 240 ~----~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (348)
+ ....+||.+. +||+++++|+ ++.++.+++++|++ .+||+|||+.|+|...
T Consensus 584 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~lIev~~~~~~~ 640 (677)
T 1t9b_A 584 RYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS---TKGPVLLEVEVDKKVP 640 (677)
T ss_dssp CCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH---CSSCEEEEEEBCSSCC
T ss_pred CcccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHH---CCCcEEEEEEecCCcc
Confidence 1 1134678775 5999999996 68899999988875 3899999999998654
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=148.61 Aligned_cols=116 Identities=21% Similarity=0.310 Sum_probs=90.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccccccccc-------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~------- 239 (348)
+.|++|+++|.|+|+++|. +++.|||++|||+++++ .++|++|+++++|+++||.|| +|++.+...
T Consensus 404 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~ 477 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATE----PERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLT 477 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC-----------
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCC
Confidence 5689999999999999985 57889999999999876 567999999999977665555 588743211
Q ss_pred --cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018967 240 --RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (348)
Q Consensus 240 --~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (348)
.....+||.+. +||+++++|+ ++.++.+++++|++ .+||+|||+.|.+..
T Consensus 478 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~---~~gp~liev~~~~~~ 531 (549)
T 3eya_A 478 DGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAFS---IDGPVLVDVVVAKEE 531 (549)
T ss_dssp -CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHHH---SSSCEEEEEEBCCCC
T ss_pred cCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecccc
Confidence 11234578774 5999999996 57788889988875 389999999998743
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-14 Score=148.71 Aligned_cols=116 Identities=18% Similarity=0.124 Sum_probs=90.1
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEe-cCCcccccccc---c--
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEW---R-- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~-NN~~~i~~~~~---~-- 240 (348)
++.|.+|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++||. ||+|++..... .
T Consensus 422 ~~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 495 (570)
T 2vbf_A 422 PLWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSY 495 (570)
T ss_dssp TTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG
T ss_pred ccchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCc
Confidence 45799999999999999995 57899999999999885 5669999999999776655 55688765321 1
Q ss_pred -ccCCchHHhh--cCCcc-----eEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 -AAKSPSYYKR--GDYVP-----GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 -~~~~~~~~~~--g~gip-----g~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. +||++ +++|+ ++.++.++++++.. ..+||+|||+.|+|
T Consensus 496 ~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~--~~~~p~liev~~~~ 551 (570)
T 2vbf_A 496 NDIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEAQA--DVNRMYWIELVLEK 551 (570)
T ss_dssp GCCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHHHH--CTTSEEEEEEECCT
T ss_pred cCCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHHHh--cCCCcEEEEEEcCc
Confidence 1234577774 59998 78996 58888888887521 13899999999986
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.8e-15 Score=150.01 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=92.0
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEe-cCCccccccccc----c
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEWR----A 241 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~-NN~~~i~~~~~~----~ 241 (348)
++.|.+|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+.+++|+++||. ||+|++...... .
T Consensus 406 ~~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 479 (566)
T 2vbi_A 406 MQWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNY 479 (566)
T ss_dssp TTTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGC
T ss_pred CcccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccC
Confidence 35799999999999999985 57899999999999885 4669999999999765555 556888664321 1
Q ss_pred cCCchHHhh--cCCc-----ceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 242 AKSPSYYKR--GDYV-----PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 242 ~~~~~~~~~--g~gi-----pg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
...+||.+. +||+ ++++|+ ++.++.+++++|++. .+||+|||+.|+|
T Consensus 480 ~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~~--~~gp~liev~~~~ 533 (566)
T 2vbi_A 480 IKNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKAN--TRGPTLIECQIDR 533 (566)
T ss_dssp CCCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHHC--CSSCEEEEEECCT
T ss_pred CCCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHhc--CCCcEEEEEEeCc
Confidence 233567664 4888 999997 688999999988862 1899999999986
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.5e-15 Score=149.50 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=90.2
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~------ 239 (348)
++.|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++||.|| +|++.+...
T Consensus 405 ~~~g~mG~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 478 (552)
T 1ovm_A 405 PLWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRY 478 (552)
T ss_dssp TTTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG
T ss_pred hhhHhhhhHHHHHHHHHHhC----CCCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCc
Confidence 35799999999999999985 57889999999999875 566999999999987666555 588764321
Q ss_pred cccCCchHHhh--cCCc----ceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 RAAKSPSYYKR--GDYV----PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ~~~~~~~~~~~--g~gi----pg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. +||+ ++++|+ ++.++.+++++|++ .+||+|||+.|++
T Consensus 479 ~~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a~~---~~gp~liev~~~~ 532 (552)
T 1ovm_A 479 NDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVAH---HERLSLIEVMLPK 532 (552)
T ss_dssp GCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHTT---CSSEEEEEEECCT
T ss_pred ccCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEcCc
Confidence 11234577774 5899 899997 57788888877653 3899999999975
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-14 Score=148.00 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=92.4
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEE-ecCCccccccccc----c
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEWR----A 241 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv-~NN~~~i~~~~~~----~ 241 (348)
++.|.+|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++|| +||+|++...... .
T Consensus 410 ~~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 483 (568)
T 2wvg_A 410 MQWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNN 483 (568)
T ss_dssp TTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGC
T ss_pred CCcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcC
Confidence 35789999999999999995 57899999999999884 556999999999976555 5556888664321 1
Q ss_pred cCCchHHhh--cCCc---------ceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 242 AKSPSYYKR--GDYV---------PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 242 ~~~~~~~~~--g~gi---------pg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....||.+. +||+ ++++|+ +..++.+++++|++. .+||+|||+.|+|
T Consensus 484 ~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~--~~gp~liev~~~~ 541 (568)
T 2wvg_A 484 IKNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN--TDGPTLIECFIGR 541 (568)
T ss_dssp CCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC--CSSCEEEEEECCT
T ss_pred CCCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc--CCCcEEEEEEcCc
Confidence 234577764 4888 889996 588999999998863 2899999999986
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-14 Score=148.20 Aligned_cols=114 Identities=19% Similarity=0.151 Sum_probs=90.9
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccccccccc-----cc
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW-----RA 241 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~-----~~ 241 (348)
+.|.+|+++|.|+|+|+|. +++.|||++|||++++ ..++|++|+++++|+++||.|| +|++..... ..
T Consensus 420 ~~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~~--~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 493 (565)
T 2nxw_A 420 YYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFND 493 (565)
T ss_dssp TTCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHHH--HGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGB
T ss_pred ccccccccchHHHHHHHhC----CCCcEEEEEechHHHh--hHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCc
Confidence 3689999999999999996 5788999999999985 4677999999999977666555 588754321 12
Q ss_pred cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCE-EEEEEEec
Q 018967 242 AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPM-ILEMDTYR 292 (348)
Q Consensus 242 ~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~-lIe~~t~R 292 (348)
...+||.+. +||+++++|+ +++++.+++++|++ .+||+ |||+.|+|
T Consensus 494 ~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~~liev~~~~ 542 (565)
T 2nxw_A 494 LDDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA---TRGRFQLIEAMIPR 542 (565)
T ss_dssp CCCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH---CCSSCEEEEEECCT
T ss_pred CCCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh---cCCCeEEEEEEccc
Confidence 234678774 5999999997 57899999988875 37898 99999975
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-14 Score=144.03 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=91.8
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-c-cccccc---cc-
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-Y-GMGTAE---WR- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~-~i~~~~---~~- 240 (348)
+..|++|+++|.|+|+|+| +++.|||++|||++++. .++|++|+++++|+++||.||+ | .+.... ..
T Consensus 423 g~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 495 (568)
T 2c31_A 423 GTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVI 495 (568)
T ss_dssp TTTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBC
T ss_pred CCCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCc
Confidence 4568999999999999998 57889999999999874 5669999999999988887776 4 432211 00
Q ss_pred ---ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 241 ---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 241 ---~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
....+||.+. +||+++++|+ ++.++.+++++|++ .+||+|||+.|+|.
T Consensus 496 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~liev~~~~~ 548 (568)
T 2c31_A 496 SCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA---SGKPCLINAMIDPD 548 (568)
T ss_dssp CTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHHH---HTSCEEEEEEBCTT
T ss_pred ccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeccc
Confidence 0234688875 5999999996 68899999998875 38999999999874
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=141.45 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=91.5
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-c-cccccc----cc
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-Y-GMGTAE----WR 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~-~i~~~~----~~ 240 (348)
+..|++|+++|.|+|+|+| +++.|||++|||++++. .++|++|+++++|+++||.||+ | ++.... .+
T Consensus 418 g~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 490 (564)
T 2q28_A 418 GTWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGA 490 (564)
T ss_dssp TTTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCC
T ss_pred CCCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCC
Confidence 4579999999999999998 57889999999999874 3669999999999887777776 4 442211 00
Q ss_pred -----ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018967 241 -----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (348)
Q Consensus 241 -----~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (348)
....+||.+. +||+++++|+ ++.++.+++++|++ .++|+|||+.|.|..
T Consensus 491 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~liev~~~~~~ 546 (564)
T 2q28_A 491 PSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGIQ---SRKPTIINVVIDPAA 546 (564)
T ss_dssp CCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHHH---HTSCEEEEEEBCTTS
T ss_pred ccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecccc
Confidence 1124577774 5999999996 68899999998875 389999999998754
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-14 Score=144.67 Aligned_cols=113 Identities=19% Similarity=0.159 Sum_probs=83.0
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------- 238 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------- 238 (348)
+..|++|. +|.|+|+++| +++.|||++|||++.+. .++|++|+++++|+++||.||+ |++....
T Consensus 414 g~~g~~G~-l~~A~Gaa~a-----~~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~ 485 (556)
T 3hww_A 414 GASGIDGL-LSTAAGVQRA-----SGKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSER 485 (556)
T ss_dssp SSCCSSSH-HHHHHHHHHH-----HCCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC--------------
T ss_pred cccccccH-HHHHHHHHhc-----CCCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhH
Confidence 34677777 9999999998 36789999999999875 3459999999999988887777 5664321
Q ss_pred cc---ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 239 WR---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 239 ~~---~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
+. ....+||.+. +||+++++|+ +++++.+++++|++ .+||+|||+.|.+
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~---~~gp~liev~~~~ 539 (556)
T 3hww_A 486 ERFYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADAWR---TPTTTVIEMVVND 539 (556)
T ss_dssp ---CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHHTT---SSSEEEEEEECCS
T ss_pred HHhccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHHHh---CCCCEEEEEECCc
Confidence 11 1234678774 5999999997 56788888777654 2899999999864
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=142.06 Aligned_cols=139 Identities=18% Similarity=0.196 Sum_probs=111.8
Q ss_pred cCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchh---HHHHHHHHHHCCCC-eEEEEecCC
Q 018967 156 MHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQ---LFEALNIAALWDLP-AILVCENNH 231 (348)
Q Consensus 156 ~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~---~~Ealn~Aa~~~LP-vI~Vv~NN~ 231 (348)
.|....-.|+...+|+||++++.|+|+|+ .+++..|+|++|||+.++|. .||+.+++..+++. +|.|+++|+
T Consensus 161 gHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~ 236 (845)
T 3ahc_A 161 SHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNG 236 (845)
T ss_dssp SSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECS
T ss_pred CCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCC
Confidence 46543334788889999999999999994 46889999999999999999 99999999999998 668889999
Q ss_pred ccccccccccc-CCchHHh--hcCCcceE-EEcC-C--CHHHHHHHHHHHHHH-----------hcc---CCC--EEEEE
Q 018967 232 YGMGTAEWRAA-KSPSYYK--RGDYVPGL-KVDG-M--DALAVKQACKFAKEH-----------ALK---NGP--MILEM 288 (348)
Q Consensus 232 ~~i~~~~~~~~-~~~~~~~--~g~gipg~-~VDG-~--D~~av~~a~~~A~~~-----------ar~---~gP--~lIe~ 288 (348)
+.|..+..... ...++.+ +|||...+ .||| + |+.++.+++.+|++. +|+ ++| ++|.+
T Consensus 237 ~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~ 316 (845)
T 3ahc_A 237 YKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIF 316 (845)
T ss_dssp BSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEE
T ss_pred CcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEE
Confidence 99987765322 2334544 36887778 8999 9 999999988766632 332 579 99999
Q ss_pred EEecCC-------CCCC
Q 018967 289 DTYRYH-------GHSM 298 (348)
Q Consensus 289 ~t~R~~-------GHs~ 298 (348)
+|.+++ |..+
T Consensus 317 rT~kG~tgp~~~~G~~~ 333 (845)
T 3ahc_A 317 RTPKGWTCPKFIDGKKT 333 (845)
T ss_dssp ECCTTTTSCSEETTEEC
T ss_pred ECcccCCCCCCCCCccc
Confidence 999999 8854
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.2e-14 Score=145.24 Aligned_cols=112 Identities=13% Similarity=0.029 Sum_probs=85.6
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEe-cCCcccccccc--------
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEW-------- 239 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~-NN~~~i~~~~~-------- 239 (348)
.+.+|+++|.|+|+|+|. ++.|||++|||+++++ .++|++|+++++|+++||. ||+|++.....
T Consensus 454 ~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~ 526 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHF 526 (604)
T ss_dssp TCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHH
T ss_pred cCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhh
Confidence 467899999999999993 6789999999999886 3559999999999876665 55688744211
Q ss_pred -cc---cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 -RA---AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 -~~---~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
+. ...+||.+. +||+++++|+ +++++.+++++|++ .+||+|||+.|.|
T Consensus 527 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~liev~~~~ 580 (604)
T 2x7j_A 527 EDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQAD---KPGLHLIEIKTDR 580 (604)
T ss_dssp HHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCCS---SCCEEEEEEECCH
T ss_pred HhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHHh---CCCCEEEEEECCc
Confidence 11 123577774 5999999997 57787777766553 2899999999864
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.3e-13 Score=138.22 Aligned_cols=107 Identities=17% Similarity=0.094 Sum_probs=75.2
Q ss_pred cchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc---c------cc-
Q 018967 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE---W------RA- 241 (348)
Q Consensus 173 G~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~---~------~~- 241 (348)
|+++|.|+|+|+ +++.|||++|||++++. .++|++|+++++|+++||.||+ |++.... . +.
T Consensus 439 ~g~l~~AiGaa~------~~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~ 510 (578)
T 3lq1_A 439 DGVVSSALGASV------VFQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLF 510 (578)
T ss_dssp SSHHHHHHHHTT------TSSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC---------------------
T ss_pred ccHHHHHHHHhc------CCCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhhc
Confidence 347999999863 47889999999999875 4569999999999887777774 7875421 0 00
Q ss_pred --cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 242 --AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 242 --~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
...+||.+. +||+++++|+ +++++.+++++|++ .+||+|||+.|.+
T Consensus 511 ~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~liev~~~~ 560 (578)
T 3lq1_A 511 GTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKASY---HKGLDIIEVKTNR 560 (578)
T ss_dssp ----CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHTT---SSSEEEEEEC---
T ss_pred cCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHHh---CCCCEEEEEECCc
Confidence 123577774 5999999996 67888888887764 3899999998865
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=112.29 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=73.3
Q ss_pred CcEEEEEeCCc-cccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccccc----------------cCCchHHhh--c
Q 018967 192 ETVTFALYGDG-AANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRA----------------AKSPSYYKR--G 251 (348)
Q Consensus 192 ~~~vv~~~GDG-a~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~~----------------~~~~~~~~~--g 251 (348)
++.||++.||| ++.+| + ..|.+|..+++|+++||.||+ |++...+... ...+||.+. +
T Consensus 953 ~~~Vv~i~GDG~~~~mg-~-~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG-Y-GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT-H-HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcc-h-HHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 47899999999 78887 3 359999999999987777777 6765422110 012577774 5
Q ss_pred CCcceEEE-cC-CCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 252 DYVPGLKV-DG-MDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 252 ~gipg~~V-DG-~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
+|++++.+ .- .++.++.+++++|+++ +||+|||+.+.-.
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl~~---~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAESF---PGPSLVIAYATCI 1071 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHHHS---SSCEEEEEECCCG
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHhc---CCCEEEEEeecCc
Confidence 99999854 33 4899999999999974 9999999997544
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.18 E-value=0.95 Score=46.59 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHhhcCCc
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGDYV 254 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~~g~gi 254 (348)
+.+|+|+|++ .-++++.++++... =.+.+.++.++..++|+++++.+.++ +-..+. .....|+.-. -.+
T Consensus 374 ~~~a~G~A~~-----G~rp~~~~~~~F~~--~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~t--H~~~~d~~~~-~~i 443 (621)
T 2o1s_A 374 VTFAAGLAIG-----GYKPIVAIYSTFLQ--RAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQT--HQGAFDLSYL-RCI 443 (621)
T ss_dssp HHHHHHHHHT-----TCEEEEEEETTGGG--GGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGG--GCBCSHHHHT-TTS
T ss_pred HHHHHHHHHC-----CCEEEEEehHhHHH--HHHHHHHHHHHhcCCCEEEEEECCccCCCCCCc--cCchHHHHHH-hcC
Confidence 4567777764 24677888888753 22334577788999999999977665 211121 1122343322 124
Q ss_pred ceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 255 PGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 255 pg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
|++.| .=.|+.+++..++.|++. .++|++|-.
T Consensus 444 P~l~v~~P~d~~e~~~~l~~a~~~--~~~Pv~i~~ 476 (621)
T 2o1s_A 444 PEMVIMTPSDENECRQMLYTGYHY--NDGPSAVRY 476 (621)
T ss_dssp TTCEEECCSSHHHHHHHHHHHHHC--CSSCEEEEC
T ss_pred CCCEEEecCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 55433 556899999999999873 278998854
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=91.11 E-value=1.3 Score=45.53 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhcCCcc
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVP 255 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g~gip 255 (348)
+.+|+|+|++ +...++++.++++.. ..++.+.+++..++|+++++..-+++.+..........++.-.. .+|
T Consensus 368 v~~a~G~A~~----G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~-~iP 439 (616)
T 3mos_A 368 VSIAVGCATR----NRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFR-SVP 439 (616)
T ss_dssp HHHHHHHHGG----GCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHH-TST
T ss_pred HHHHHHHHHc----CCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCccccCCCCcccCHHHHHHhc-CCC
Confidence 3455666654 333567778999874 35777888899999999988776664432111111223333221 367
Q ss_pred eEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 256 GLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 256 g~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
++.| .=.|+.++..+++.|.+. ++|++|-.
T Consensus 440 ~l~V~~P~d~~e~~~~l~~a~~~---~gp~~ir~ 470 (616)
T 3mos_A 440 TSTVFYPSDGVATEKAVELAANT---KGICFIRT 470 (616)
T ss_dssp TEEEECCCSHHHHHHHHHHHHTC---CSEEEEEC
T ss_pred CCEEEecCCHHHHHHHHHHHHhc---CCCEEEEE
Confidence 6655 556888999998888753 89987643
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=89.95 E-value=2.2 Score=44.44 Aligned_cols=110 Identities=18% Similarity=0.154 Sum_probs=67.7
Q ss_pred Cccccch-hHHHHHHHHHHHhCC-CCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCch
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSK-DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~-~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~ 246 (348)
.|+-.++ +++|+|+|+ .+ .-++++.++.+.+. ..++++..++..++|++|++...+++.+..........+
T Consensus 419 ~gIaE~~~v~~a~GlA~----~G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~ed 491 (675)
T 1itz_A 419 FGVREHGMGAICNGIAL----HSPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEH 491 (675)
T ss_dssp CCSCHHHHHHHHHHHHT----TCTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSH
T ss_pred ecccHHHHHHHHHHHHh----cCCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCcCcHHH
Confidence 3444333 346666664 33 24566666655543 356778889999999999997777764321111122233
Q ss_pred HHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+.-.. .+|++.| .=-|+.++..+++.|++. .++|++|-.
T Consensus 492 la~lr-~iP~l~V~~Pad~~e~~~~l~~a~~~--~~~Pv~i~~ 531 (675)
T 1itz_A 492 LVSFR-AMPNILMLRPADGNETAGAYKVAVLN--RKRPSILAL 531 (675)
T ss_dssp HHHHH-SSSSCEEECCCSHHHHHHHHHHHHHC--TTSCEEEEE
T ss_pred HHHhc-cCCCeEEEECCCHHHHHHHHHHHHHh--CCCcEEEEe
Confidence 33221 3666544 556899999999999873 289999854
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=89.66 E-value=2.1 Score=44.51 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=67.3
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +++|+|+|+. +.-++++..+..-+. ..++++.+++..++|+++++...+++.+..........++
T Consensus 407 ~GIaE~~~v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edl 479 (669)
T 2r8o_A 407 YGVREFGMTAIANGISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQV 479 (669)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred cchhHHHHHHHHHHHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHH
Confidence 3444443 3566777654 223556666655443 2356788899999999999988887644221111222343
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (348)
.-.. .+|++.| .=-|+.++..+++.|++. .++|++|-
T Consensus 480 a~lr-~iP~l~V~~Pad~~E~~~~l~~a~~~--~~~Pv~i~ 517 (669)
T 2r8o_A 480 ASLR-VTPNMSTWRPCDQVESAVAWKYGVER--QDGPTALI 517 (669)
T ss_dssp HHHH-TSTTCEEECCSSHHHHHHHHHHHHHC--SSSCEEEE
T ss_pred HHhc-CCCCCEEEecCCHHHHHHHHHHHHHh--CCCcEEEE
Confidence 3321 2555544 556899999999999973 28999974
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=89.64 E-value=2.5 Score=42.98 Aligned_cols=104 Identities=16% Similarity=0.042 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhhc-CCc
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DYV 254 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~g-~gi 254 (348)
-+|.|.|.+ .+.-.+++|..|=|++|. .-++..|..-++|+|+|.-+-... ++....-+ ..|....+ +--
T Consensus 57 ~~A~GyAr~---tg~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q--~~d~~~~~~~tk 128 (589)
T 2pgn_A 57 WMVNGYNYV---KDRSAAVGAWHCVGNLLL---HAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQ--QVPWQSFTPIAR 128 (589)
T ss_dssp HHHHHHHHH---HTSCCEEEEEEGGGGGGC---HHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSS--CCCGGGGTTTSS
T ss_pred HHHHHHHHH---HCCCEEEEEecCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCCCCccc--ccChhhccccEE
Confidence 346666654 355678999999999984 456778889999999998765532 21110001 11221111 112
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
....+ .+++++.+.+.+|+..+.. .||+.|++-.
T Consensus 129 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (589)
T 2pgn_A 129 STQRV--ERLDKVGEAIHEAFRVAEGHPAGPAYVDIPF 164 (589)
T ss_dssp EEEEC--CSGGGHHHHHHHHHHHHTSSSCCEEEEEEET
T ss_pred EEeec--CCHHHHHHHHHHHHHHHhcCCCccEEEEeCH
Confidence 22444 4677888888888888776 4999998754
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=88.68 E-value=3 Score=43.38 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=68.7
Q ss_pred Cccccc-hhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGA-QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~-~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.+ .+++|+|+|+. +.-++++..+.+-.. ..++++.+++..++|++|+....+++.+..........++
T Consensus 408 ~GIaE~~~v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~ 480 (663)
T 3kom_A 408 YGVREFGMAAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHV 480 (663)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred cCccHHHHHHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcCCHHHH
Confidence 455555 34667888764 234566666665542 3467788899999999999887777644222112222333
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (348)
+-.. .+|++.| -=.|+.++..+++.|++. .++|++|-
T Consensus 481 a~lr-~iPnl~V~~Pad~~e~~~~l~~A~~~--~~~Pv~ir 518 (663)
T 3kom_A 481 PSLR-LIPNLSVWRPADTIETMIAWKEAVKS--KDTPSVMV 518 (663)
T ss_dssp HHHH-TSTTCEEECCCSHHHHHHHHHHHHHC--SSCCEEEE
T ss_pred HHHh-cCCCcEEEeeCCHHHHHHHHHHHHHh--CCCCEEEE
Confidence 3211 3566544 445888999999999862 28999884
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=88.56 E-value=1.1 Score=46.16 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHhhcCCc
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGDYV 254 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~~g~gi 254 (348)
+.+|+|+|++ .-++++.++.+.. +=.+...++.++..++|+++++.+.++ +-..+. .....|..-. -.+
T Consensus 377 ~~~a~G~A~~-----G~rp~~~~~~~F~--~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~t--H~~~~d~a~~-r~i 446 (629)
T 2o1x_A 377 VTTAAGMALQ-----GMRPVVAIYSTFL--QRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGAT--HNGVFDLSFL-RSI 446 (629)
T ss_dssp HHHHHHHHHT-----TCEEEEEEEHHHH--GGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTT--TCBCSHHHHT-TTS
T ss_pred HHHHHHHHHc-----CCEEEEEecHHHH--HHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcc--cCccHHHHHH-Hcc
Confidence 4567777764 2466777777654 222334567788999999999977665 211111 1112333221 125
Q ss_pred ceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018967 255 PGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (348)
Q Consensus 255 pg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (348)
|++.| .=.|+.+++..++.|++. ++|++|-..
T Consensus 447 P~l~v~~P~d~~e~~~~~~~a~~~---~~Pv~i~~~ 479 (629)
T 2o1x_A 447 PGVRIGLPKDAAELRGMLKYAQTH---DGPFAIRYP 479 (629)
T ss_dssp TTCEEECCSSHHHHHHHHHHHHHS---SSCEEEECC
T ss_pred CCcEEEecCCHHHHHHHHHHHHhC---CCCEEEEec
Confidence 55443 556899999999999974 899988553
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=88.22 E-value=1.4 Score=44.85 Aligned_cols=103 Identities=20% Similarity=0.174 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|.|.|.+. ++-.+++|..|=|++|. .-++..|...++|+|+|+-+-... ++.. .....|.... .+-
T Consensus 64 ~~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~g~~---~~Q~~d~~~~~~~~~ 134 (590)
T 1ybh_A 64 FAAEGYARSS---GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTD---AFQETPIVEVTRSIT 134 (590)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTT---CTTCCCHHHHHGGGS
T ss_pred HHHHHHHHHH---CCCEEEEeccCchHHHH---HHHHHHHHhhCCCEEEEeCcCCccccCCC---cccccCHHHHHHHHh
Confidence 4566766553 45567778888888873 456777888899999988665432 1110 0111122221 121
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-....| .+++++.+.+++|+..+++ .||+.|++-.
T Consensus 135 k~~~~v--~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~ 171 (590)
T 1ybh_A 135 KHNYLV--MDVEDIPRIIEEAFFLATSGRPGPVLVDVPK 171 (590)
T ss_dssp SEEEEC--CCGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred CeEEec--CCHHHHHHHHHHHHHHHhhCCCceEEEEeCc
Confidence 222344 4677899999999988776 5899998854
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=87.97 E-value=2.6 Score=43.60 Aligned_cols=109 Identities=16% Similarity=0.079 Sum_probs=68.4
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +.+|+|+|+. +.-++++..+.+=. + ..++.+.+++..++|++|+....+++.+.......+..++
T Consensus 387 ~GIaE~~~v~~a~GlA~~----gG~~P~~~~f~~F~--~-~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~ 459 (632)
T 3l84_A 387 FGIREHAMAAINNAFARY----GIFLPFSATFFIFS--E-YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQL 459 (632)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGH--H-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHH
T ss_pred eCccHHHHHHHHHHHHHc----CCCEEEEEecHHHH--H-HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHH
Confidence 4555544 3667787765 22355666665433 2 3567788889999999999887777644222222223343
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+-.. .+|++.| -=-|+.++..+++.|++ .++|++|-.
T Consensus 460 a~lr-~iP~l~V~~P~d~~e~~~~l~~A~~---~~~Pv~ir~ 497 (632)
T 3l84_A 460 STFR-AMPNFLTFRPADGVENVKAWQIALN---ADIPSAFVL 497 (632)
T ss_dssp HHHH-HSSSCEEECCSSHHHHHHHHHHHHH---CSSCEEEEC
T ss_pred HHHh-cCCCCEEEecCCHHHHHHHHHHHHh---CCCCEEEEE
Confidence 3211 2565544 44588999999999987 489998753
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.96 E-value=2.7 Score=43.48 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=67.8
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +++|+|+|+. +.-++++..+.-.+. -.++++.+++..++|+++++.+.+++.+..........|+
T Consensus 402 ~gIaE~~~~~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edl 474 (651)
T 2e6k_A 402 FGVREHAMGAILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHL 474 (651)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred cCcCHHHHHHHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCccccHHHH
Confidence 3444333 3567777765 223566666633332 2456788899999999999988887654222111222343
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
.-.. .+|++.| .=.|+.++..+++.|++. .++|++|-.
T Consensus 475 a~lr-~iP~l~V~~Pad~~E~~~~l~~A~~~--~~~Pv~i~~ 513 (651)
T 2e6k_A 475 MSLR-AMPNLFVIRPADAYETFYAWLVALRR--KEGPTALVL 513 (651)
T ss_dssp HHHH-TSTTCEEECCSSHHHHHHHHHHHHHC--CSSCEEEEC
T ss_pred HHhc-CCCCcEEEecCCHHHHHHHHHHHHHc--CCCCEEEEE
Confidence 3321 2555443 556899999999999873 278998865
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=87.91 E-value=3 Score=43.78 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=67.4
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +.+|+|+|+. +.-++++.++. .|.+ ..+..+.+++..++|++|+....+++.+.......+..++
T Consensus 453 ~GIaE~~mv~~AaGlA~~----~G~~Pv~~~f~--~F~~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~ 525 (711)
T 3uk1_A 453 YGVREFGMSAAINGLVLH----GGYKPFGGTFL--TFSD-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHV 525 (711)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEG--GGHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred eCccHHHHHHHHHHHHHc----CCCEEEEEEhH--HHHH-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCccCChhHH
Confidence 4555554 4677888863 12345555553 2332 3456788889999999999987776544221112222333
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (348)
+-. -.+|++.| .=-|+.++..+++.|++ .++|++|-
T Consensus 526 a~l-r~iPnl~V~~Pad~~E~~~~l~~Ai~---~~~Pv~ir 562 (711)
T 3uk1_A 526 ASL-RLIPNLDVWRPADTVETAVAWTYAVA---HQHPSCLI 562 (711)
T ss_dssp HHH-HTSTTCEEECCSSHHHHHHHHHHHHH---SSSCEEEE
T ss_pred HHH-hcCCCCEEEecCCHHHHHHHHHHHHh---cCCCEEEE
Confidence 321 13666544 45688999999999987 48999884
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=87.62 E-value=2.5 Score=44.06 Aligned_cols=109 Identities=19% Similarity=0.179 Sum_probs=66.6
Q ss_pred Cccccchh-HHHHHHHHHHHhCCCCc-EEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCch
Q 018967 169 HGIVGAQI-PLGCGLAFAQKYSKDET-VTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (348)
Q Consensus 169 ~g~lG~~l-p~A~G~A~A~k~~~~~~-~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~ 246 (348)
.|+-.+++ ++|+|+|+. +.-+ +++..+.+-+. ..++++.+++..++|++|++...+++.+.......+..+
T Consensus 414 ~gIaE~~~vg~a~GlA~~----Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tHq~~ed 486 (680)
T 1gpu_A 414 YGIREHAMGAIMNGISAF----GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIET 486 (680)
T ss_dssp CCSCHHHHHHHHHHHHHH----CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSH
T ss_pred CCccHHHHHHHHHHHHhc----CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCccCCHHH
Confidence 45444443 567777764 3225 56666543332 235668889999999999987777764421111122233
Q ss_pred HHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018967 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (348)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (348)
++-.. .+|++.| -=-|+.++..+++.|++. .++|++|-
T Consensus 487 la~lr-~iP~l~V~~Pad~~e~~~~l~~A~~~--~~~Pv~i~ 525 (680)
T 1gpu_A 487 LAHFR-SLPNIQVWRPADGNEVSAAYKNSLES--KHTPSIIA 525 (680)
T ss_dssp HHHHH-TSSSCEEECCCSHHHHHHHHHHHHHC--SSCCEEEE
T ss_pred HHHhc-CCCCCEEEecCCHHHHHHHHHHHHHh--CCCcEEEE
Confidence 33221 3566544 446899999999999873 28999984
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=87.52 E-value=1.6 Score=43.87 Aligned_cols=102 Identities=13% Similarity=0.023 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh-c-CC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR-G-DY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~-g-~g 253 (348)
-+|.|.|.+ .+.-.+++|..|=|++|. .-++..|..-+.|+|+|+-+-... ++.. ..-..|.... + +-
T Consensus 55 ~~A~GyAr~---tg~~~v~~~TsGpG~~N~---~~gi~~A~~~~vPvl~itg~~~~~~~~~~---~~Q~~d~~~~~~~~t 125 (549)
T 3eya_A 55 FAAGAEAQL---SGELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSG---YFQETHPQELFRECS 125 (549)
T ss_dssp HHHHHHHHH---HSSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEESCGGGTTSC---CTTCCCHHHHTSTTC
T ss_pred HHHHHHHHH---hCCCEEEEeCCCCcHhhh---HHHHHHHHhhCCCEEEEeCCCchhhcCCC---CCCccCHHHHHhhhh
Confidence 346666654 345567778888888883 456778889999999988654321 1110 0111222221 1 11
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
-....| .+++.+.+.+.+|+..+.. .||+.|++-
T Consensus 126 k~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~iP 160 (549)
T 3eya_A 126 HYCELV--SSPEQIPQVLAIAMRKAVLNRGVSVVVLP 160 (549)
T ss_dssp SEEEEC--CSGGGHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred heEEEe--CCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 222344 3566777777777777666 899999975
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=87.04 E-value=2 Score=43.28 Aligned_cols=104 Identities=18% Similarity=0.106 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCC-chHHhh--cC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKS-PSYYKR--GD 252 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~-~~~~~~--g~ 252 (348)
-+|.|.|.+. ++-.++++..|=|++|. .-++..|...++|+|+|+-+-... ++.. . ... .|.... .+
T Consensus 55 ~~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~-~--~Q~~~d~~~~~~~~ 125 (563)
T 2uz1_A 55 HAAEGYARAG---AKLGVALVTAGGGFTNA---VTPIANAWLDRTPVLFLTGSGALRDDETN-T--LQAGIDQVAMAAPI 125 (563)
T ss_dssp HHHHHHHHHH---TSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTSC-C--TTCCCCHHHHHGGG
T ss_pred HHHHHHHHHh---CCCEEEEEccCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCch-h--hhhhccHHHHhhhh
Confidence 3466666543 44556777778888873 345666788899999998765542 2111 0 111 232221 12
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDTY 291 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t~ 291 (348)
-.....| .+++++.+.+.+|+..+.. .||+.|++-..
T Consensus 126 tk~~~~v--~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 126 TKWAHRV--MATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CSEEEEC--CCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hceEEEc--CCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 2223445 4677788888888877766 59999988543
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=86.83 E-value=2.2 Score=43.14 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|.|.|.+ .++-.++++..|=|++| ..-++..|..-++|+|+|+-+-... ++... .....|.... .+-
T Consensus 62 ~~A~Gyar~---tg~p~v~~~TsGpG~~N---~~~~v~~A~~~~~Pll~itg~~~~~~~~~~~--~~Q~~d~~~~~~~~~ 133 (573)
T 2iht_A 62 VAADVLARI---TGRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPND--THQCLDSVAIVAPMS 133 (573)
T ss_dssp HHHHHHHHH---HCSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTTT--STTCCCHHHHHGGGS
T ss_pred HHHHHHHHH---HCCCEEEEEccCchHHH---HHHHHHHHHhhCCCEEEEcccCcccccCCcC--ccccCCHHHHHHhHh
Confidence 345666654 34456677777888877 3456777888899999998765542 22200 0111232221 122
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-....+ .+++++.+.+.+|+..+.. .||+.|++-.
T Consensus 134 k~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (573)
T 2iht_A 134 KYAVEL--QRPHEITDLVDSAVNAAMTEPVGPSFISLPV 170 (573)
T ss_dssp SEEEEC--CSGGGHHHHHHHHHHHHTBSSCCCEEEEEEH
T ss_pred hEEEEc--CCHHHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 222444 4677888888888888776 4999999864
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=86.62 E-value=1.8 Score=44.23 Aligned_cols=102 Identities=15% Similarity=0.093 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-cccc--ccccccCCchHHhhcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGT--AEWRAAKSPSYYKRGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~--~~~~~~~~~~~~~~g~g 253 (348)
-+|.|.|.+ .+.-.++++..|=|++|. .-++..|..-+.|+|+|+-+-.. .++. .++. ....+.+ .+-
T Consensus 64 ~aA~GyAr~---tg~~gv~~~TsGpG~~N~---~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q~~--d~~~~~~-~~t 134 (603)
T 4feg_A 64 MAAAADAKL---TGKIGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEM--NENPIYA-DVA 134 (603)
T ss_dssp HHHHHHHHH---HSSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCC--CCGGGGT-TTC
T ss_pred HHHHHHHHH---hCCceEEEecCCchHHHH---HHHHHHHHHcCCCEEEEecCCcccccCCCccccc--cHHHHhh-hhc
Confidence 346666654 345567777888888883 45677888899999988855332 1111 1110 0111111 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
.....|. +++.+.+.+.+|+..+.+ .||++|++-
T Consensus 135 k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 169 (603)
T 4feg_A 135 DYNVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIP 169 (603)
T ss_dssp SEEEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 2223442 444566666666655555 899999874
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=86.56 E-value=1.8 Score=43.79 Aligned_cols=103 Identities=12% Similarity=0.053 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|.|.|.+ .++-.++++..|=|++|. .-++..|..-++|+|+|+-+-... ++.. . ....|.... .+-
T Consensus 62 ~~A~Gyar~---tg~p~v~~~TsGpG~~N~---~~~l~~A~~~~vPll~itg~~~~~~~~~~-~--~Q~~d~~~~~~~~t 132 (566)
T 1ozh_A 62 FMAAAVGRI---TGKAGVALVTSGPGCSNL---ITGMATANSEGDPVVALGGAVKRADKAKQ-V--HQSMDTVAMFSPVT 132 (566)
T ss_dssp HHHHHHHHH---HSSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTC---------CCCHHHHHGGGC
T ss_pred HHHHHHHHH---HCCCEEEEEccChHHHHH---HHHHHHHHhcCCCEEEEeCCCccccCCCC-c--ccccCHHHHHHHHh
Confidence 346666654 344556777778888873 445777777899999988665432 2211 0 111232221 122
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
.....| .+++++.+.+.+|+..+.. .||+.|++-.
T Consensus 133 k~~~~v--~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~ 169 (566)
T 1ozh_A 133 KYAIEV--TAPDALAEVVSNAFRAAEQGRPGSAFVSLPQ 169 (566)
T ss_dssp SEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred heEEEc--CCHHHHHHHHHHHHHHHhcCCCCeEEEEeCh
Confidence 223445 4677788888888877766 5999998864
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=86.37 E-value=1.8 Score=44.98 Aligned_cols=102 Identities=21% Similarity=0.181 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|.|.|.+ .+.-.+++|..|=|++|. .-++..|..-++|+|+|+-+-... ++.. .....|... +.+-
T Consensus 134 ~aAdGyAr~---tGkpgvv~~TsGpG~~N~---~~gia~A~~d~vPllvItG~~~~~~~g~~---a~Q~~Dq~~i~~~~t 204 (677)
T 1t9b_A 134 HMAEGYARA---SGKPGVVLVTSGPGATNV---VTPMADAFADGIPMVVFTGQVPTSAIGTD---AFQEADVVGISRSCT 204 (677)
T ss_dssp HHHHHHHHH---HSSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTTTSC---CTTCCCHHHHTGGGS
T ss_pred HHHHHHHHH---HCCCEEEEECCChHHHHH---HHHHHHHHHcCCCEEEEeCCCChhhcCCC---CccccCHHHHhhhhe
Confidence 456677655 345567888888888873 445777778899999998664432 1111 001112211 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
-....| .++..+.+.+.+|+..+.+ .||++|++-
T Consensus 205 k~~~~v--~~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 205 KWNVMV--KSVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp SEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eEEEEc--CCHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 222445 4677888888888887765 589999986
|
| >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=85.54 E-value=1.6 Score=42.41 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=58.9
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccc--ccccc-ccCCchHHh
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMG--TAEWR-AAKSPSYYK 249 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~--~~~~~-~~~~~~~~~ 249 (348)
..+.+|+|+|++ ..++++...|.|-... .+.|..++..++|+++++-+... +.+ +..+. ......|..
T Consensus 75 ~a~~~a~Gaa~a-----G~r~~~~ts~~G~~~~---~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~ 146 (395)
T 1yd7_A 75 ASIAAAIGASWA-----GAKAMTATSGPGFSLM---QENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGT 146 (395)
T ss_dssp HHHHHHHHHHHT-----TCCEEEEEETTHHHHH---TTTCC----CCCCEEEEEEC------------------------
T ss_pred HHHHHHHHHHHh-----CCcEEEEeCchHHHHH---HHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhcc
Confidence 344556666665 3457778889888653 45566677889998877766443 322 21111 010111111
Q ss_pred hc-CCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018967 250 RG-DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (348)
Q Consensus 250 ~g-~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (348)
.| ++++.+ .-.++.+++..+..|.+.+++ +.|+++....+
T Consensus 147 ~g~~g~~vl--~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~ 188 (395)
T 1yd7_A 147 HGDHSLIVL--SPSTVQEAFDFTIRAFNLSEKYRTPVILLTDAE 188 (395)
T ss_dssp --CCCCEEE--CCCSHHHHHHHHHHHHHHHHHHTSEEEEEECHH
T ss_pred CCCcceEEE--eCCCHHHHHHHHHHHHHHHHHHCCCEEEEcchh
Confidence 11 345434 446899999999999987777 89999988765
|
| >2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B | Back alignment and structure |
|---|
Probab=85.54 E-value=2.8 Score=39.77 Aligned_cols=99 Identities=19% Similarity=0.127 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEE-EeCCccccchhHHHHHHHHH---------HCCCCeEEEEecCCc-ccccccccccC
Q 018967 175 QIPLGCGLAFAQKYSKDETVTFA-LYGDGAANQGQLFEALNIAA---------LWDLPAILVCENNHY-GMGTAEWRAAK 243 (348)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~-~~GDGa~~~G~~~Ealn~Aa---------~~~LPvI~Vv~NN~~-~i~~~~~~~~~ 243 (348)
.+.+|.|+|++ + -++++. .++|... ..++.+.+.+ +.++|+++++.+ ++ +-..+...+
T Consensus 74 ~v~~a~G~A~~----G-~rp~~~~~f~~F~~---~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~-- 142 (341)
T 2ozl_B 74 FAGIAVGAAMA----G-LRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQ-- 142 (341)
T ss_dssp HHHHHHHHHHT----T-CEEEEECSSGGGGG---GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCC--
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHHHHH---HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhh--
Confidence 34567777764 2 344554 4888872 3455555433 389999999885 53 211122211
Q ss_pred CchHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018967 244 SPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (348)
Q Consensus 244 ~~~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (348)
..+ ..--.+|++.| .=.|+.+.+..++.|++. ++|++|-..
T Consensus 143 ~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~---~~Pv~i~~~ 184 (341)
T 2ozl_B 143 CFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIRD---NNPVVVLEN 184 (341)
T ss_dssp CCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHHS---SSCEEEEEC
T ss_pred HHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHhc---CCCEEEEEC
Confidence 112 11112555433 556899999999998864 899987653
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=85.44 E-value=3.8 Score=41.24 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-ccccc--ccc--cCC-chHHh-
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAE--WRA--AKS-PSYYK- 249 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~--~~~--~~~-~~~~~- 249 (348)
-+|.|.|.+ .+ -.++++..|=|++| ..-++..|...++|+|+|+-+-... ++... ... ... .|...
T Consensus 55 ~~A~Gyar~---tg-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~ 127 (566)
T 2vbi_A 55 FSAEGYARS---NG-AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEM 127 (566)
T ss_dssp HHHHHHHHH---HS-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHH
T ss_pred HHHHHHHhh---cC-CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHH
Confidence 456676654 34 55666777888887 3445667888999999998765532 21110 000 001 12222
Q ss_pred h-cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018967 250 R-GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (348)
Q Consensus 250 ~-g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (348)
. .+-.....|. +++++.+.+.+|+..+.. .||+.|++-.
T Consensus 128 ~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~ 168 (566)
T 2vbi_A 128 ARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIAC 168 (566)
T ss_dssp HHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEET
T ss_pred HhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 1 1222334553 344455556666655555 7999999864
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=84.87 E-value=4.2 Score=40.97 Aligned_cols=106 Identities=18% Similarity=0.167 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-ccccc--ccc--cCC-chHHhh
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAE--WRA--AKS-PSYYKR 250 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~--~~~--~~~-~~~~~~ 250 (348)
-+|.|.|.+. + -.++++..|=|++| ..-++..|...++|+|+|+-+-... .+... ... ... .|....
T Consensus 55 ~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~ 127 (568)
T 2wvg_A 55 FSAEGYARAK---G-AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEM 127 (568)
T ss_dssp HHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHH
T ss_pred HHHHHHHHhh---C-CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHH
Confidence 4566766553 4 56777788888887 3456777889999999998765542 21110 000 001 122221
Q ss_pred --cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018967 251 --GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (348)
Q Consensus 251 --g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (348)
.+-.....|. +++.+.+.+.+|+..+.. .||+.|++-..
T Consensus 128 ~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 128 AKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp HTTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred HHhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 1222335553 566666667777666666 79999998653
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=83.97 E-value=2.2 Score=42.99 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|.|.|.+ .+.-.+++|..|=|++| ..-++..|..-++|+|+|+-+-... ++... ......|... +.+-.
T Consensus 60 ~A~Gyar~---tg~pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~~~~~~~~-~~~Q~~dq~~~~~~~tk 132 (564)
T 2q28_A 60 AAAASGFL---TQKPGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDRAIVDLQQ-GDYEELDQMNAAKPYAK 132 (564)
T ss_dssp HHHHHHHH---HSSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTS-CCTTCCCHHHHHGGGSS
T ss_pred HHHHHHHH---hCCCEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCCC-CccccccHHHHHHHhhh
Confidence 46666654 34445777777888877 3456777888899999998765432 11000 0011112211 11222
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
....| .+++.+.+.+.+|+..+.. .||+.|++-.
T Consensus 133 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 168 (564)
T 2q28_A 133 AAFRV--NQPQDLGIALARAIRVSVSGRPGGVYLDLPA 168 (564)
T ss_dssp EEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred eeeec--CCHHHHHHHHHHHHHHHhcCCCceEEEEcCH
Confidence 22444 3566777777888777765 6999998753
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=83.78 E-value=2.3 Score=42.91 Aligned_cols=104 Identities=11% Similarity=0.092 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~gi 254 (348)
+|.|.|.+ .+.-.+++|..|=|++| ..-++..|..-++|+|+|+-+-... ++... ......|.... .+--
T Consensus 62 ~A~GyAr~---tg~pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~~~~~~~~-~~~Q~~dq~~~~~~~tk 134 (568)
T 2c31_A 62 AASIAGYI---EGKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQ-GDYEEMDQMNVARPHCK 134 (568)
T ss_dssp HHHHHHHH---HSSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTC-CCTTCCCHHHHSGGGSS
T ss_pred HHHHHHHH---hCCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCccccCCCC-CcccccCHHHHHHhhhh
Confidence 46666654 34445777777888887 3556777888899999998765432 11000 00111122211 1112
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
....| .+++.+.+.+.+|+..+.. .||+.|++-.
T Consensus 135 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (568)
T 2c31_A 135 ASFRI--NSIKDIPIGIARAVRTAVSGRPGGVYVDLPA 170 (568)
T ss_dssp EEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEET
T ss_pred eeeec--CCHHHHHHHHHHHHHHhcCCCCceEEEeCCH
Confidence 22344 3666777778888777665 6899998753
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=83.57 E-value=5.9 Score=41.42 Aligned_cols=109 Identities=19% Similarity=0.193 Sum_probs=63.8
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +.+|.|+|+. +.-++++..+..=+ . ...-++.++++.++|++||....+++.+.......+..++
T Consensus 437 ~GIaE~~mv~~A~GlA~~----gG~~Pv~~tF~~F~-d--~~~~~ir~~al~~lpvv~v~thdg~gvG~dG~THq~ied~ 509 (700)
T 3rim_A 437 FGVREHAMGAILSGIVLH----GPTRAYGGTFLQFS-D--YMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHL 509 (700)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGG-G--GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTSCSSHH
T ss_pred cCccHHHHHHHHHHHHHc----CCCEEEEEecHHHH-H--HHHHHHHHhcCCCCCEEEEEeCCCcccCCCCCccCChhHH
Confidence 4444443 3667787765 22344444332211 1 1233577899999999999987777644322222223344
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccC--CCEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKN--GPMILE 287 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~--gP~lIe 287 (348)
+-.. .+|++.| -=-|+.++..+++.|++. .+ +|++|-
T Consensus 510 a~lr-~iPnl~V~~Pad~~e~~~~l~~Ai~~--~~~~~Pv~ir 549 (700)
T 3rim_A 510 SALR-AIPRLSVVRPADANETAYAWRTILAR--RNGSGPVGLI 549 (700)
T ss_dssp HHHH-TSTTCEEECCSSHHHHHHHHHHHHTT--TTCSSCEEEE
T ss_pred HHHh-cCCCCEEEeCCCHHHHHHHHHHHHHc--cCCCCCEEEE
Confidence 3321 3666544 445888999999998863 25 799985
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=83.53 E-value=6.8 Score=40.90 Aligned_cols=109 Identities=19% Similarity=0.126 Sum_probs=64.9
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +.+|+|+|+. +.-++++..+.-=+. ...-++.++++.++||+|++...+++.+.......+..++
T Consensus 432 ~GIaE~~mv~~A~GlA~~----gG~~P~~~tf~~Fs~---f~~~air~~al~~lpVv~v~~~~gigvG~dG~THq~ied~ 504 (690)
T 3m49_A 432 YGVREFAMGAAMNGIALH----GGLKTYGGTFFVFSD---YLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQL 504 (690)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHH
T ss_pred cCchHHHHHHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHH
Confidence 4555544 3667787764 123445544422221 1133577889999999999988887544322222223344
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (348)
+-.. .+|++.| -=-|+.++..+++.|++. .++|++|-
T Consensus 505 a~lr-~iPnl~V~~Pad~~E~~~~l~~Ai~~--~~~Pv~ir 542 (690)
T 3m49_A 505 AALR-AMPNVSVIRPADGNESVAAWRLALES--TNKPTALV 542 (690)
T ss_dssp HHHH-TSTTCEEECCSSHHHHHHHHHHHHHC--SSSCEEEE
T ss_pred HHHh-cCCCCEEEeeCCHHHHHHHHHHHHHc--CCCCEEEE
Confidence 3221 3666544 445889999999999873 27899884
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=83.19 E-value=2.4 Score=43.25 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-ccc--ccccccCCchHHhhcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGT--AEWRAAKSPSYYKRGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~--~~~~~~~~~~~~~~g~g 253 (348)
-+|.|.|.+ .++-.+++|..|=|++|- .-++..|..-++|+|+|.-+-... +++ .++. ....+.+ .+-
T Consensus 83 ~aA~GyAr~---tgkpgv~~~TsGpG~~N~---~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q~~--d~~~~~~-~~t 153 (604)
T 2x7j_A 83 FFALGLAKA---KQRPVLLICTSGTAAANF---YPAVVEAHYSRVPIIVLTADRPHELREVGAPQAI--NQHFLFG-NFV 153 (604)
T ss_dssp HHHHHHHHH---HTSCEEEEECSSHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGSSSCCTTCC--CCTTTTG-GGS
T ss_pred HHHHHHHHh---hCCCEEEEECChhHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCCcC--cHHHHhh-hhe
Confidence 346666654 345567788888888873 445777778899999998665432 211 1110 0011111 111
Q ss_pred cceEEEc-CCC-H---HHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 018967 254 VPGLKVD-GMD-A---LAVKQACKFAKEHALK--NGPMILEMDTY 291 (348)
Q Consensus 254 ipg~~VD-G~D-~---~av~~a~~~A~~~ar~--~gP~lIe~~t~ 291 (348)
-....|. ..+ + ..+.+.+++|+..+.. .||+.|++-..
T Consensus 154 k~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 154 KFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp SCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred eeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 1224443 222 0 0166666777666655 69999998653
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.48 E-value=4.6 Score=41.12 Aligned_cols=104 Identities=14% Similarity=0.083 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhh--cCCcc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVP 255 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gip 255 (348)
+|.|.|.+. .++-.++++..|=|++|. .-++..|..-+.|+|+|+-+-.........-+ ..|.... .+--.
T Consensus 80 ~A~GyAr~t--gg~~~v~~~TsGpG~~N~---~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q--~~d~~~~~~~~tk~ 152 (616)
T 2pan_A 80 MAEGYTRAT--AGNIGVCLGTSGPAGTDM---ITALYSASADSIPILCITGQAPRARLHKEDFQ--AVDIEAIAKPVSKM 152 (616)
T ss_dssp HHHHHHHHS--TTCCEEEEECSTHHHHTS---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCTT--CCCHHHHHGGGSSE
T ss_pred HHHHHHHhc--CCCceEEEeCCCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCccccc--ccCHHHHHHHHHHh
Confidence 456666441 134456667778888773 44577788889999988876543211110001 1222221 12122
Q ss_pred eEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 256 g~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+ .++..+...+++|+..+.. .||+.|++-.
T Consensus 153 ~~~v--~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~ 187 (616)
T 2pan_A 153 AVTV--REAALVPRVLQQAFHLMRSGRPGPVLVDLPF 187 (616)
T ss_dssp EEEC--CSGGGHHHHHHHHHHHHHSSSCCCEEEEEEH
T ss_pred hccc--CCHHHHHHHHHHHHHHHhcCCCceEEEEcch
Confidence 2344 4567788888888877765 5899998853
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=82.34 E-value=3.1 Score=42.32 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhhcCCcc
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYVP 255 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~g~gip 255 (348)
-+|.|.|.+ .++-.++++..|=|++|. .-++.-|..-++|+|+|+-+-... ++...........+.+ .+--.
T Consensus 57 ~~A~GyAr~---tgk~~v~~~tsGpG~~N~---~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~-~~tk~ 129 (590)
T 1v5e_A 57 MAAVMQSKF---GGNLGVTVGSGGPGASHL---INGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYD-HIAVY 129 (590)
T ss_dssp HHHHHHHHT---TCCCCEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCCHHHHH-TTCSE
T ss_pred HHHHHHHHH---HCCCEEEEeCcChHHHHH---HHHHHHHHhcCCCEEEEcCCCCcccCCCCcccccCHHHHHH-hhccE
Confidence 345555543 344567777778888873 345666778899999998765542 2211000001111221 12222
Q ss_pred eEEEcCCCHHHHHHHHHHHHHHhcc-C-CCEEEEEE
Q 018967 256 GLKVDGMDALAVKQACKFAKEHALK-N-GPMILEMD 289 (348)
Q Consensus 256 g~~VDG~D~~av~~a~~~A~~~ar~-~-gP~lIe~~ 289 (348)
...+ .++.++.+.+++|+..+.+ + ||++| +-
T Consensus 130 ~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP 162 (590)
T 1v5e_A 130 NRRV--AYAEQLPKLVDEAARMAIAKRGVAVLE-VP 162 (590)
T ss_dssp EEEC--CSGGGHHHHHHHHHHHHHHTTSEEEEE-EE
T ss_pred EEEe--CCHHHHHHHHHHHHHHHhcCCCceEEE-Ec
Confidence 3444 4677788888888877766 4 89999 53
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=82.30 E-value=10 Score=39.28 Aligned_cols=110 Identities=16% Similarity=0.112 Sum_probs=65.9
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +++|+|+|+. +.-++++.++..-+. ..++++.+++..++|+++++...+++.+..........++
T Consensus 407 ~GIaE~~~~~~a~GlA~~----GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edl 479 (673)
T 1r9j_A 407 FGVREHAMCAILNGLDAH----DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELV 479 (673)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred cCccHHHHHHHHHHHHhc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCcccCCHHHH
Confidence 3444333 2467777654 223566666644332 2356688899999999999877777644221111122333
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
.-.. .+|++.| .=.|+.++..+++.|++. .++|++|-.
T Consensus 480 a~lr-~iP~l~V~~Pad~~e~~~~l~~a~~~--~~~Pv~i~~ 518 (673)
T 1r9j_A 480 AALR-AMPNLQVIRPSDQTETSGAWAVALSS--IHTPTVLCL 518 (673)
T ss_dssp HHHH-HSTTCEEECCSSHHHHHHHHHHHHHC--TTCCEEEEC
T ss_pred HHHc-CCCCCEEEeCCCHHHHHHHHHHHHHh--CCCeEEEEE
Confidence 3221 2555543 556889999999999873 289999843
|
| >1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 | Back alignment and structure |
|---|
Probab=82.08 E-value=5.4 Score=38.26 Aligned_cols=98 Identities=16% Similarity=0.051 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEE-eCCccccchhHHHHHHH-HHHC--------CCCeEEEEecCCcccccccccccCCc
Q 018967 176 IPLGCGLAFAQKYSKDETVTFAL-YGDGAANQGQLFEALNI-AALW--------DLPAILVCENNHYGMGTAEWRAAKSP 245 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~-~GDGa~~~G~~~Ealn~-Aa~~--------~LPvI~Vv~NN~~~i~~~~~~~~~~~ 245 (348)
+.+|.|+|++ + -++++.+ ++|... ..++.+.. ++.. ++|+++++.+.+..-+.+.. + ..
T Consensus 111 v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~h--s-~~ 179 (369)
T 1ik6_A 111 LGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYH--S-NS 179 (369)
T ss_dssp HHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC--------------
T ss_pred HHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCccc--c-cc
Confidence 4567777764 2 3455544 888763 23444533 4443 99999998866632111111 1 11
Q ss_pred hHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 246 ~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+. ..--.+|++.| .=.|+.+.+.+++.|++ .++|++|-.
T Consensus 180 ~~-a~l~~iPnl~V~~Psd~~e~~~ll~~A~~---~~~Pv~i~~ 219 (369)
T 1ik6_A 180 PE-AIFVHTPGLVVVMPSTPYNAKGLLKAAIR---GDDPVVFLE 219 (369)
T ss_dssp HH-HHHHTCTTCEEECCCSHHHHHHHHHHHHH---SSSCEEEEE
T ss_pred HH-HHHcCCCCcEEEecCCHHHHHHHHHHHHh---CCCCEEEEE
Confidence 21 11113455433 55689999999999886 489998843
|
| >1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B | Back alignment and structure |
|---|
Probab=81.94 E-value=4.2 Score=38.32 Aligned_cols=100 Identities=14% Similarity=0.029 Sum_probs=58.1
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEE-EeCCccccchhHHHHHH-HHHH--------CCCCeEEEEecCCcccccccccccC
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFA-LYGDGAANQGQLFEALN-IAAL--------WDLPAILVCENNHYGMGTAEWRAAK 243 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~-~~GDGa~~~G~~~Ealn-~Aa~--------~~LPvI~Vv~NN~~~i~~~~~~~~~ 243 (348)
+.+.+|.|+|++ + -++++. .++++.. ..++.+. .++. +++|+++++.+.+...+ + ....
T Consensus 63 ~~~~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g~~~G-~--th~s 131 (338)
T 1qs0_B 63 GIVGTAVGMGAY----G-LRPVVEIQFADYFY---PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYG-G--QTHS 131 (338)
T ss_dssp HHHHHHHHHHHH----T-CEEEEECSCGGGCG---GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSC-C--SSSS
T ss_pred HHHHHHHHHHhC----C-CEEEEEeccHhHHH---HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCCCCCC-c--cccc
Confidence 345677788776 2 344454 4888872 3455543 3443 35999999866542211 1 1112
Q ss_pred CchHHhhcCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 244 SPSYYKRGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 244 ~~~~~~~g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
..|..-.. .+|++. +.-.|+.+.+..++.|++. ++|++|-.
T Consensus 132 ~~d~~~l~-~iP~l~V~~Psd~~e~~~~l~~A~~~---~~Pv~i~~ 173 (338)
T 1qs0_B 132 QSPEAMFT-QVCGLRTVMPSNPYDAKGLLIASIEC---DDPVIFLE 173 (338)
T ss_dssp CCCHHHHT-TSTTCEEECCCSHHHHHHHHHHHHHS---SSCEEEEE
T ss_pred ccHHHHHh-cCCCCEEEeeCCHHHHHHHHHHHHhc---CCcEEEEE
Confidence 22433211 244433 3556899999999998864 89998844
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=81.84 E-value=3.6 Score=41.02 Aligned_cols=105 Identities=18% Similarity=0.073 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|.|.|.+. +...++++..|=|++|. .-++..|...++|+|+|+-+-... ++.. .-+. ..|.... .+-
T Consensus 52 ~~A~Gyar~t---g~~~v~~~tsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~-~~q~-~~d~~~~~~~~~ 123 (528)
T 1q6z_A 52 GIADGYAQAS---RKPAFINLHSAAGTGNA---MGALSNAWNSHSPLIVTAGQQTRAMIGVE-ALLT-NVDAANLPRPLV 123 (528)
T ss_dssp HHHHHHHHHH---TSCEEEEEEHHHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHTTT-CTTC-CTTGGGSSTTSC
T ss_pred HHHHHHHHHh---CCCEEEEEcCChHHHHH---HHHHHHHhhcCCCEEEEeCCCcccccCCC-cccc-cccHHHHHHHhh
Confidence 4566776553 45566777778888863 445677888999999998664431 1110 0011 0122221 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDTY 291 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t~ 291 (348)
-....+ .+++++.+.+.+|+..+.. .||+.|++-..
T Consensus 124 k~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 124 KWSYEP--ASAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp SCEECC--SSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred HhhhcC--CCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 112334 3566677777777776665 58999998653
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=81.71 E-value=3.9 Score=41.29 Aligned_cols=105 Identities=16% Similarity=0.102 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccc--cccCCch-HHh-h-c
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEW--RAAKSPS-YYK-R-G 251 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~--~~~~~~~-~~~-~-g 251 (348)
+|.|.|.+. ++-.+++|..|=|++|. .-++..|..-++|+|+|+-+-... ++.... -+....| ... . .
T Consensus 74 ~A~GyAr~t---gkp~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~ 147 (565)
T 2nxw_A 74 AADAAARYS---STLGVAAVTYGAGAFNM---VNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKE 147 (565)
T ss_dssp HHHHHHHHH---TSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTT
T ss_pred HHHHHHHHh---CCCeEEEECCCCCHHHH---HHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHh
Confidence 466766553 44556777778888873 445777888999999998764332 211100 0000111 111 1 1
Q ss_pred CCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018967 252 DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (348)
Q Consensus 252 ~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (348)
+-.....|. +++++.+.+.+|+..+.. .||+.|++-.
T Consensus 148 ~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 185 (565)
T 2nxw_A 148 ITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIPR 185 (565)
T ss_dssp SCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEEG
T ss_pred hheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECCh
Confidence 222234553 444555556666655555 8999999873
|
| >2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... | Back alignment and structure |
|---|
Probab=80.05 E-value=2.7 Score=39.86 Aligned_cols=99 Identities=18% Similarity=0.137 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEE-EeCCccccchhHHHHHH-HHHHCC--------C-CeEEEEecCCcccccccccccC
Q 018967 175 QIPLGCGLAFAQKYSKDETVTFA-LYGDGAANQGQLFEALN-IAALWD--------L-PAILVCENNHYGMGTAEWRAAK 243 (348)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~-~~GDGa~~~G~~~Ealn-~Aa~~~--------L-PvI~Vv~NN~~~i~~~~~~~~~ 243 (348)
.+.+|+|+|++ + -++++. .++++.. ..++.+. .++.++ + |+++++..-+.+.+ +. ...
T Consensus 79 ~v~~a~G~A~~----G-~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~~~G-~t--h~~ 147 (342)
T 2bfd_B 79 IVGFGIGIAVT----G-ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHG-AL--YHS 147 (342)
T ss_dssp HHHHHHHHHHT----T-CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSC-GG--GSS
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCCCCC-cc--hhh
Confidence 35667777764 2 345554 4888854 2455554 455444 4 99988775432211 11 111
Q ss_pred CchHHhhcCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 244 SPSYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 244 ~~~~~~~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
..|..-.. .+|++ .+.-.|+.+.+..++.|+++ ++|++|-.
T Consensus 148 ~~d~~~l~-~iP~l~V~~Psd~~e~~~~l~~a~~~---~~Pv~i~~ 189 (342)
T 2bfd_B 148 QSPEAFFA-HCPGIKVVIPRSPFQAKGLLLSCIED---KNPCIFFE 189 (342)
T ss_dssp CCCHHHHH-TSTTCEEECCSSHHHHHHHHHHHHHS---SSCEEEEE
T ss_pred HhHHHHHh-cCCCcEEEeeCCHHHHHHHHHHHHhc---CCcEEEEe
Confidence 22332211 25553 33557899999999999864 89999844
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 348 | ||||
| d2ozla1 | 361 | c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de | 4e-68 | |
| d1umda_ | 362 | c.36.1.11 (A:) Branched-chain alpha-keto acid dehy | 2e-54 | |
| d2bfda1 | 395 | c.36.1.11 (A:6-400) Branched-chain alpha-keto acid | 2e-54 | |
| d1w85a_ | 365 | c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd | 7e-54 | |
| d1qs0a_ | 407 | c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B | 1e-52 |
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Score = 215 bits (549), Expect = 4e-68
Identities = 164/299 (54%), Positives = 212/299 (70%), Gaps = 4/299 (1%)
Query: 44 PFTSHQC-EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEA 102
H+ E P + T ++ L ++R M T+RRME+ AD LYK K++RGFCHL DGQEA
Sbjct: 11 KCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEA 70
Query: 103 VAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD 162
+G+EAGI D +ITAYR H RG ++ E+ +EL GRK GC+ GKGGSMH Y K
Sbjct: 71 CCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK- 129
Query: 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP 222
FYGG+GIVGAQ+PLG G+A A KY+ + V LYGDGAANQGQ+FEA N+AALW LP
Sbjct: 130 -NFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 188
Query: 223 AILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHA-LKN 281
I +CENN YGMGT+ RAA S YYKRGD++PGL+VDGMD L V++A +FA +
Sbjct: 189 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 248
Query: 282 GPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
GP+++E+ TYRYHGH MSDPG +YRTR+EI VR + DPI ++ ++ +LA+ +ELK
Sbjct: 249 GPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELK 307
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Score = 180 bits (458), Expect = 2e-54
Identities = 80/289 (27%), Positives = 130/289 (44%), Gaps = 6/289 (2%)
Query: 56 SVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITK-K 114
++ ++L +R M R ++ L + F G EA + + I
Sbjct: 25 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGF 83
Query: 115 DSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGA 174
D + YRDH L G L E+ +++ K + G+ H K F+ + +
Sbjct: 84 DWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIAS 143
Query: 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM 234
+P G A + K + V +GDGA ++G + +N AA+ PA+ + ENN Y +
Sbjct: 144 HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAI 203
Query: 235 GTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALKN-GPMILEMDTY 291
SP+ + +PG VDGMD LA K A E A + GP ++E+ Y
Sbjct: 204 SVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVY 263
Query: 292 RYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
RY HS +D S YR ++E++ R ++DPI R R+ + A L E+ +
Sbjct: 264 RYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEE 311
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Score = 181 bits (460), Expect = 2e-54
Identities = 73/291 (25%), Positives = 123/291 (42%), Gaps = 4/291 (1%)
Query: 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT 112
PS +++L ++ M + M+ + + + Y G+E +G A +
Sbjct: 41 PSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALD 99
Query: 113 KKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV 172
D + R+ + R L ++ G G+ +H+ K+ F +
Sbjct: 100 NTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPL 159
Query: 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY 232
QIP G A+A K + V +G+GAA++G N AA + P I C NN Y
Sbjct: 160 ATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGY 219
Query: 233 GMGTAEWRAAKSPSYYKRGD--YVPGLKVDGMDALAVKQACKFAKEHALKNG-PMILEMD 289
+ T + RG + ++VDG D AV A K A+ A+ P ++E
Sbjct: 220 AISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAM 279
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
TYR S SD S +R+ DE++ ++ PI R+R +L+ E++ K
Sbjct: 280 TYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK 330
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Score = 179 bits (454), Expect = 7e-54
Identities = 83/291 (28%), Positives = 131/291 (45%), Gaps = 13/291 (4%)
Query: 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT 112
E + ++L R+M R ++ + SL + + GF GQEA I +
Sbjct: 32 EEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALE 90
Query: 113 KKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV 172
K+D I+ YRD + G L + F G G +G ++ I+
Sbjct: 91 KEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPEGVNVL---------PPQIII 141
Query: 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY 232
GAQ G+A K + V GDG +QG +E +N A + PAI V +NN +
Sbjct: 142 GAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRF 201
Query: 233 GMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALKN-GPMILEMD 289
+ T + + + ++ +PG++VDGMD LAV A K A+E A+ GP ++E
Sbjct: 202 AISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETL 261
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
+RY H+MS T E+ ++DP+ R RK + A L +E+E
Sbjct: 262 CFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEEN 312
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Score = 177 bits (449), Expect = 1e-52
Identities = 75/285 (26%), Positives = 124/285 (43%), Gaps = 6/285 (2%)
Query: 60 TPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIIT 119
P+ L R M R + + K + F G+EA+ G + + D
Sbjct: 72 DPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRTDMCFP 130
Query: 120 AYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLG 179
YR + R +L+E+ +L+ + G+ + + +++GF+ G + Q
Sbjct: 131 TYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQA 190
Query: 180 CGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEW 239
G A A D + A GDGA + AL A ++ P IL NN + + T +
Sbjct: 191 VGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQA 250
Query: 240 RAAKSPSYYKR---GDYVPGLKVDGMDALAVKQACKFAKEHALKN-GPMILEMDTYRYHG 295
A + + G + L+VDG D +AV A ++A E A + GP ++E TYR
Sbjct: 251 IAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGP 310
Query: 296 HSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELK 340
HS SD S YR D+ S DPI R+++ ++ +E+E +
Sbjct: 311 HSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQ 354
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 348 | |||
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 100.0 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 100.0 | |
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 100.0 | |
| d1r9ja2 | 336 | Transketolase (TK), PP module {Leishmania mexicana | 99.85 | |
| d2r8oa2 | 331 | Transketolase (TK), PP module {Escherichia coli [T | 99.84 | |
| d1gpua1 | 335 | Transketolase (TK), PP module {Baker's yeast (Sacc | 99.82 | |
| d1itza1 | 338 | Transketolase (TK), PP module {Maize (Zea mays) [T | 99.8 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 99.76 | |
| d2ez9a3 | 228 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 99.7 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 99.69 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 99.66 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 99.65 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 99.61 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 99.59 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 99.59 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 99.58 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.56 | |
| d1pvda3 | 196 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 99.54 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 99.53 | |
| d2c42a2 | 447 | Pyruvate-ferredoxin oxidoreductase, PFOR, domains | 97.47 | |
| d2djia2 | 184 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 93.89 | |
| d1t9ba2 | 175 | Acetohydroxyacid synthase catalytic subunit {Baker | 93.8 | |
| d1zpda2 | 186 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 93.63 | |
| d1ybha2 | 195 | Acetohydroxyacid synthase catalytic subunit {Thale | 93.63 | |
| d2ihta2 | 186 | Carboxyethylarginine synthase {Streptomyces clavul | 93.51 | |
| d2ez9a2 | 174 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 93.51 | |
| d1ozha2 | 181 | Catabolic acetolactate synthase {Klebsiella pneumo | 93.48 | |
| d2ji7a2 | 188 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 92.76 | |
| d1r9ja1 | 190 | Transketolase (TK), Pyr module {Leishmania mexican | 92.73 | |
| d1pvda2 | 180 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 92.72 | |
| d2r8oa1 | 195 | Transketolase (TK), Pyr module {Escherichia coli [ | 92.32 | |
| d1gpua2 | 197 | Transketolase (TK), Pyr module {Baker's yeast (Sac | 91.58 | |
| d2c42a1 | 257 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain I | 90.85 | |
| d1q6za2 | 180 | Benzoylformate decarboxylase {Pseudomonas putida [ | 90.45 | |
| d2ozlb1 | 192 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 89.29 | |
| d1itza2 | 192 | Transketolase (TK), Pyr module {Maize (Zea mays) [ | 87.52 | |
| d1qs0b1 | 204 | 2-oxoisovalerate dehydrogenase (E1B), Pyr module { | 86.79 | |
| d1w85b1 | 192 | Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d | 82.23 | |
| d2bfdb1 | 203 | Branched-chain alpha-keto acid dehydrogenase, Pyr | 80.93 |
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-81 Score=610.93 Aligned_cols=312 Identities=54% Similarity=0.937 Sum_probs=299.0
Q ss_pred CCCcceecCCcccccccccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcC
Q 018967 33 DTTPLTIETSVPFTSHQCEA-PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGI 111 (348)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~e~-~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l 111 (348)
++.+.|++++ ++..|+++. |+..+.||+|+++++||.|+++|.||+++.++|++|++.||+|++.||||+++|+..+|
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~p~~~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l 79 (361)
T d2ozla1 1 FANDATFEIK-KCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGI 79 (361)
T ss_dssp CCSEEEEECC-CCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTS
T ss_pred CCCCceeecc-cccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcccccCCCCHHHHHHHHHHhC
Confidence 3567889988 889999986 77888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCC
Q 018967 112 TKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKD 191 (348)
Q Consensus 112 ~~~D~i~~~yR~~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~ 191 (348)
+++|+++++||+|+++|++|+++.++|+|++|+.+++++|++|+||+..+ |+++.+++||.++|+|+|+|+|.|+++.
T Consensus 80 ~~~D~~~~~yR~~~~~la~G~~~~~~~ae~~gk~~g~~~G~~~~~h~~~~--~~~~~~~ivg~~~p~A~G~A~a~k~~~~ 157 (361)
T d2ozla1 80 NPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYNGK 157 (361)
T ss_dssp CTTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCBT--TBCCCCCSTTTHHHHHHHHHHHHHHHTC
T ss_pred CccCEecccccchheeeeecccchhhhhhccCCccccccccccccccccc--cccCccccccccchhHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999875 8999999999999999999999999999
Q ss_pred CcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhcCCcceEEEcCCCHHHHHHHH
Q 018967 192 ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQAC 271 (348)
Q Consensus 192 ~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g~gipg~~VDG~D~~av~~a~ 271 (348)
+++++|++|||++++|.|||+||+|++|+||+||||+||+|+++|+.+.++...+.+++++++++++|||||+.+|++++
T Consensus 158 ~~v~~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~~~~~~~~~~vdGnD~~av~~a~ 237 (361)
T d2ozla1 158 DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREAT 237 (361)
T ss_dssp CCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEEETTCHHHHHHHH
T ss_pred CCeEEEEecCCCccCcchhhhhhhhhhccCceEEEEEeCCcccCCCchhccccccccccccccceEEeccCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999888877788888899999999999999999999
Q ss_pred HHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 272 KFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 272 ~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
++|++++|+ +||+|||+.|||++||+++|++..||+++|+++|++++|||.+++++|+++|++|++++++|+++++
T Consensus 238 ~~A~~~~R~g~gP~liE~~TyR~~gHs~~D~~~~YR~~~Ei~~~~~k~DPi~~~~~~Li~~g~~se~e~~~i~~ei~ 314 (361)
T d2ozla1 238 RFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVR 314 (361)
T ss_dssp HHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEEeeecCCCCcccccccccCCHHHHHhhhhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 999999999 8999999999999999999998889999999998766899999999999999999999999998875
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.2e-80 Score=602.74 Aligned_cols=291 Identities=27% Similarity=0.436 Sum_probs=281.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCC-CEEEcCCcchHHHHhcCCC
Q 018967 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKK-DSIITAYRDHCTFLGRGGT 133 (348)
Q Consensus 55 ~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~-D~i~~~yR~~~~~l~~G~~ 133 (348)
..+.||+|+|+++|+.|+++|.||+++..+|++|++ ||+|++.||||+++|+..+|+++ |+++++||+|+++|++|++
T Consensus 24 ~~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~-~~~~~~~GqEA~~vg~~~al~~~~D~~~~~yR~h~~~la~G~~ 102 (362)
T d1umda_ 24 FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIP 102 (362)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-SCCCCCTTCHHHHHHHHHHSCTTTSEEECCTTTHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-ceeeCCCCHHHHHHHHHHHcCCCCCeEEeccccHHHHHHHHhh
Confidence 457899999999999999999999999999999998 89999999999999999999986 9999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHH
Q 018967 134 LLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL 213 (348)
Q Consensus 134 ~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Eal 213 (348)
+.++|+|++|+.+|+++|++||||+++++.+|++.+++||.++|+|+|+|+|.|+++.+.++||++|||+++||.|||+|
T Consensus 103 ~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Eal 182 (362)
T d1umda_ 103 LKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGI 182 (362)
T ss_dssp HHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHH
T ss_pred HHHHHHHHhcccCCCcccccccccccccccCcccccccccccchHHHHHHHhhhcccccceeeeeccCCcccCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCeEEEEecCCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018967 214 NIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (348)
Q Consensus 214 n~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (348)
|+|++|+||+||||+||+|+++|+...+...+++.++ +||+|+++|||||+++|++++++|++++|+ +||+|||+.|
T Consensus 183 n~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~a~~~Ai~~~R~g~gP~lIE~~t 262 (362)
T d1umda_ 183 NFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRV 262 (362)
T ss_dssp HHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred HHhhhccCCeeeeeeecccccccccccccccchhhhhhhhheeeeeEeccchHHHHHHHHHHHHHHHHhcCCCEEEEccc
Confidence 9999999999999999999999998888777777776 499999999999999999999999999999 8999999999
Q ss_pred ecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 291 YRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 291 ~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
||+.||+++|++..||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++
T Consensus 263 yR~~gHs~~Dd~~~YR~~~Ei~~w~-~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~ 318 (362)
T d1umda_ 263 YRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIR 318 (362)
T ss_dssp CCCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred ccccCCCccccchhhcchhhhHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 9999999999988899999999998 6999999999999999999999999999875
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=1.1e-79 Score=606.68 Aligned_cols=291 Identities=26% Similarity=0.385 Sum_probs=279.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCH
Q 018967 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTL 134 (348)
Q Consensus 55 ~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~ 134 (348)
..+.||+|+|+++||.|+++|.||+++..+++||++ ||||++.||||++||+..+|+++||+|++||+|+++|++|+++
T Consensus 67 ~~~~l~~e~l~~~yr~M~~~R~~d~~~~~l~rqG~i-~~~~~~~GqEA~~vg~~~aL~~~D~~f~~yR~~g~~larG~~~ 145 (407)
T d1qs0a_ 67 WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSL 145 (407)
T ss_dssp GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccCCCCChHHHHHHHHHhCCCCCEEEecccCHHHHHHHHhhH
Confidence 457899999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHH
Q 018967 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN 214 (348)
Q Consensus 135 ~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn 214 (348)
.++|+|++|+++++++|++||||++.++.||++.+++||+|+|+|+|+|+|.|+++.++++||++|||++++|.|||+||
T Consensus 146 ~~~~~e~~g~~~g~~~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN 225 (407)
T d1qs0a_ 146 VEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALT 225 (407)
T ss_dssp HHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCCCCccccccccccceeccccccccccchhhhhHHHHhhccCcceecccccccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCeEEEEecCCcccccccccccC-CchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018967 215 IAALWDLPAILVCENNHYGMGTAEWRAAK-SPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (348)
Q Consensus 215 ~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~-~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (348)
+|++|+|||||||+||+|+|+|+...... ..+++.+ +||+|+++|||||+.+|++++++|++++|+ +||+|||+.|
T Consensus 226 ~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~gP~lIE~~T 305 (407)
T d1qs0a_ 226 FAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVT 305 (407)
T ss_dssp HHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEEC
T ss_pred HHhccCcceEEEEEEecccccccchhhhccchhHHHHHHhcCcceEEeccccHHHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 99999999999999999999998765443 4567666 599999999999999999999999999999 8999999999
Q ss_pred ecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 291 YRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 291 ~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
||+.||+++||++.||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++
T Consensus 306 yR~~gHs~sDD~~~YR~~~E~~~w~-~~DPI~rl~~~Li~~g~~se~e~~~i~~ei~ 361 (407)
T d1qs0a_ 306 YRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFE 361 (407)
T ss_dssp CCCSCSSTTCCGGGTSCTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred ecCCCCCccccccccCCHHHHHHHH-hCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 9999999999989999999999997 6999999999999999999999999998875
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-79 Score=601.29 Aligned_cols=294 Identities=25% Similarity=0.390 Sum_probs=262.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCC
Q 018967 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (348)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~ 132 (348)
|...+.||+|+++++||.|+++|.||+++.++|++|+++||+| +.||||++||++.+|+++||++++||+|+++|++|+
T Consensus 41 ~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~~~~-~~GqEA~~vg~~~al~~~D~~~~~yR~h~~~la~G~ 119 (395)
T d2bfda1 41 PSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMT-NYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDY 119 (395)
T ss_dssp GGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCC-CTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTC
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccC-CCChHHHHHHHHHHcCCCCeeccccchhHhhhhhhC
Confidence 5678899999999999999999999999999999999977665 789999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHH
Q 018967 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212 (348)
Q Consensus 133 ~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ea 212 (348)
+++.+|+|++|+.+++++|++||||+++++.||++.+++||+++|+|+|+|+|.|+++.+++++|++|||++++|.|||+
T Consensus 120 ~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ea 199 (395)
T d2bfda1 120 PLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 199 (395)
T ss_dssp CHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHH
T ss_pred CHHHHHHHHhhcccCccccccccccccccccccccccccccccccHHHHHHHHhhhcCcccccccccCCCCccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhc--CCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 213 ln~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
||+|++|+||+||||+||+|+++|+...++..+++++++ ||||+++|||+|+.+|++++++|++++|+ +||+|||+.
T Consensus 200 lN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~ 279 (395)
T d2bfda1 200 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAM 279 (395)
T ss_dssp HHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHhhcCCceEEEEEecccccccccchhhcchhHHHhhhccccceeEEecCcHHHHHHHHHHhhhhhhccCCceEEEEe
Confidence 999999999999999999999999998888888888764 99999999999999999999999999999 999999999
Q ss_pred EecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 290 t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
|||+.+|+.+||+..||+++|++.|++..|||.+++++|+++|++|++++++|+++++
T Consensus 280 TyR~~~Hs~~DD~~~YR~~~Ei~~w~k~DdPi~~~~~~Li~~g~~s~ee~~~i~~e~~ 337 (395)
T d2bfda1 280 TYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSR 337 (395)
T ss_dssp CCCCC--CC-------------------CCHHHHHHHHHTTTTCCCHHHHHHHHHHHH
T ss_pred eecCCCCCCcCCcccccCHHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999853359999999999999999999999998875
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=1.2e-74 Score=564.90 Aligned_cols=284 Identities=29% Similarity=0.445 Sum_probs=262.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCC
Q 018967 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (348)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~ 132 (348)
|...+.+|+|+|+++||.|+++|.||+++.++|++|++ ||+|++.||||++||++.+|+++|+++++||+|+++|++|+
T Consensus 32 ~~~~p~ls~e~l~~~yr~M~l~R~~e~~~~~l~~qG~i-g~~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~hg~~la~G~ 110 (365)
T d1w85a_ 32 EEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGL 110 (365)
T ss_dssp GGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCCTTCHHHHHHHHHTCCTTCEEECCSSCHHHHHHTTC
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-ccccCCCChHHHHHHHHHhCCCcCEeeecccchheeeecCC
Confidence 45567899999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHH
Q 018967 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212 (348)
Q Consensus 133 ~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ea 212 (348)
++.++|++++|+..+.+.|+ +.|+++.+++||+++|+|+|+|+|.|+++.++++||++|||++++|.|||+
T Consensus 111 ~~~~~~~~~~G~~~g~~~~~---------~~~~~~~~~ivG~~~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ea 181 (365)
T d1w85a_ 111 PLYQAFLFSRGHFHGNQIPE---------GVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 181 (365)
T ss_dssp CHHHHHHHHHTCGGGGCCCT---------TCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHH
T ss_pred CHHHHHHhhCCCCCccCCCC---------CceeeccccccCccccchhhHHhhhhhcccCCceeeeccCCcccchhHHHH
Confidence 99999999998876654443 346788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhc--CCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 213 ln~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
||+|++|+||+||||+||+|+++|+...++...+++.++ ||+|+++|||+|+.+|++++++|++++|+ +||+|||++
T Consensus 182 lN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~a~~~A~~~~R~g~gP~lie~~ 261 (365)
T d1w85a_ 182 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETL 261 (365)
T ss_dssp HHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEE
T ss_pred HHHhhhcccCceEEEEEecccccccccccccccchhhhcccccCceEEEecchhHHHHHHHHHHHHHhhcCCccEEEEee
Confidence 999999999999999999999999988888777777764 99999999999999999999999999999 899999999
Q ss_pred EecCCCCCCCCC-CCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 290 TYRYHGHSMSDP-GSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 290 t~R~~GHs~~D~-~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
|||+.|||.+|+ +..||+++|++.|+ ++|||.+++++|+++|++|++|+++|+++++
T Consensus 262 tyR~~gHs~~dd~~~~YR~~eEi~~w~-~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~ 319 (365)
T d1w85a_ 262 CFRYGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAKGLWSEEEENNVIEQAK 319 (365)
T ss_dssp CCCSSCSCSSCC------CHHHHHHHH-TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cccccccCCcCCcccccCChHHHHHHH-hCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 999999998764 67899999999997 6999999999999999999999999998875
|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=99.85 E-value=7.8e-20 Score=174.87 Aligned_cols=150 Identities=21% Similarity=0.221 Sum_probs=117.3
Q ss_pred CccCCCccccchhHHHHHHHHHHHh----------CCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKY----------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~----------~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|++|++++.|+|+|+|.|+ ..-++.|+|++|||+++||++|||+++|+.++|+ +|+|++||+.
T Consensus 108 gve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~ 187 (336)
T d1r9ja2 108 GVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYI 187 (336)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSB
T ss_pred cccccccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhhchHHHHHHHHHHHHhhcCCEEEEEecccc
Confidence 5667799999999999999999875 2335789999999999999999999999999998 6788899988
Q ss_pred ccccccccccCCchHHh--hcCCcceEEEcC--CCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC---CC
Q 018967 233 GMGTAEWRAAKSPSYYK--RGDYVPGLKVDG--MDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS---TY 305 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~--~g~gipg~~VDG--~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~---~Y 305 (348)
.+..+.+.... .++.+ ++||..++.||| +|...+..++..+.. .+++|++|.++|.+++|+++.+... ..
T Consensus 188 ~idg~~~~~~~-~d~~~rf~afGW~vi~Vdgg~~d~~~~~~~~~~a~~--~~~kP~~Ii~kTiiG~G~~~e~~~~~Hg~p 264 (336)
T d1r9ja2 188 SIDGSTSLSFT-EQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA--TKGKPKMIVQTTTIGFGSSKQGTEKVHGAP 264 (336)
T ss_dssp CSSSBGGGTCC-CCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH--CCSSCEEEEEECCTTTTSTTTTSGGGTSSC
T ss_pred cccccccccch-hHHHHHHHHhccceEEEecCchHHHHHHHHhhhhhh--ccCCCccceEEEEEeecccccCCcceeecC
Confidence 87665544433 34444 367878899987 455666666665554 1378999999999999998765432 24
Q ss_pred CCHHHHHHHHh
Q 018967 306 RTRDEISGVRQ 316 (348)
Q Consensus 306 R~~~e~~~~~~ 316 (348)
-+.||++.+++
T Consensus 265 l~~eEi~~~k~ 275 (336)
T d1r9ja2 265 LGEEDIANIKA 275 (336)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 58899988874
|
| >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=5.9e-20 Score=175.36 Aligned_cols=151 Identities=23% Similarity=0.220 Sum_probs=120.2
Q ss_pred CCccCCCccccchhHHHHHHHHHHHhCC----------CCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCC
Q 018967 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (348)
Q Consensus 163 ~~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~ 231 (348)
.++..++|+||+++++|+|+|+|.|+.+ .++.|+|++|||++++|++|||+++|+.++|. +|+|++||+
T Consensus 106 ~gve~stGsLG~Gl~~avG~Ala~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~wEA~~~A~~~kL~nLi~i~D~N~ 185 (331)
T d2r8oa2 106 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG 185 (331)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CCcccCcCchhhhhHHHHHHHHHHHHHhhhhccccccccCceEEEecccccccccchhHhhhhcchhcccceeeHHhhhh
Confidence 3677889999999999999999998743 35779999999999999999999999999997 678899999
Q ss_pred cccccccccccCCchHHh--hcCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC-C-CCCCC-
Q 018967 232 YGMGTAEWRAAKSPSYYK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS-D-PGSTY- 305 (348)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~--~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~-D-~~~~Y- 305 (348)
+.+..+.+..... ++.+ .+||...+ .+||+|..++.+|+..|... .++|++|.++|.++.|.+.. + +..++
T Consensus 186 ~~~~g~~~~~~~~-~~~~rf~afGw~vi~~~dghd~~~i~~A~~~a~~~--~~kP~~Ii~~TikGkG~~~~e~~~~~Hg~ 262 (331)
T d2r8oa2 186 ISIDGHVEGWFTD-DTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV--TDKPSLLMCKTIIGFGSPNKAGTHDSHGA 262 (331)
T ss_dssp EETTEEGGGTCCC-CHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTCTTTTTSGGGTSS
T ss_pred hccccccccccch-hHHHHHHHcCCeeecccccchHHHHHHHHHHHHhh--cCCCccceeeeeeecCCcccCCCchhhcC
Confidence 9877666554433 3333 25777767 57999999999999988752 37899999999999999743 2 22233
Q ss_pred -CCHHHHHHHHh
Q 018967 306 -RTRDEISGVRQ 316 (348)
Q Consensus 306 -R~~~e~~~~~~ 316 (348)
-+.+|++..++
T Consensus 263 ~l~~~e~~~ak~ 274 (331)
T d2r8oa2 263 PLGDAEIALTRE 274 (331)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 35677776653
|
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=1.4e-18 Score=165.87 Aligned_cols=151 Identities=23% Similarity=0.242 Sum_probs=115.3
Q ss_pred CCccCCCccccchhHHHHHHHHHHHh----------CCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCC
Q 018967 163 SGFYGGHGIVGAQIPLGCGLAFAQKY----------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (348)
Q Consensus 163 ~~~~~~~g~lG~~lp~A~G~A~A~k~----------~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~ 231 (348)
.++..++|+||++++.|+|+|+|.|+ ...++.|+|++|||++++|+.|||+.+|+.++|. +|+|+++|+
T Consensus 107 pgie~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~~EA~~~A~~~~L~NLi~i~D~N~ 186 (335)
T d1gpua1 107 PGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNK 186 (335)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CCeEeCCCChhHHHHHHHHHHHHhHhhhcccccCCcCCCCCcEEEEecchhhchhhhhhhHhHhhhhccCCEEEEEeccc
Confidence 36777899999999999999999885 3357889999999999999999999999999997 679999999
Q ss_pred cccccccccccCCchHHh--hcCCcceEEEcCC--CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC-CC-
Q 018967 232 YGMGTAEWRAAKSPSYYK--RGDYVPGLKVDGM--DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS-TY- 305 (348)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~--~g~gipg~~VDG~--D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~-~Y- 305 (348)
+.+..+.+..... ++.+ .++|..++.|||+ |...+..++..+... .++|++|.++|.+.+|..+.+... ++
T Consensus 187 ~~~dg~~~~~~~~-~~~~~f~a~GW~vi~vdg~~~d~~~~~~~~~~~~~~--~~KPt~Iia~TikGkGs~~e~~~~~Hg~ 263 (335)
T d1gpua1 187 ITIDGATSISFDE-DVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLS--KDKPTLIKMTTTIGYGSLHAGSHSVHGA 263 (335)
T ss_dssp EETTEEGGGTCCC-CHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHC--TTSCEEEEEECCTTTTSTTTTSGGGSSS
T ss_pred ccccccccccccC-CHHHHHHhCCCcEEEEcCCchhHHHHHHHHhhhhcc--cCCCcceEEeeccCCcCcccCchhHHhh
Confidence 9877665544433 4443 2566667999754 566666666655541 278999999999999966544332 22
Q ss_pred -CCHHHHHHHHh
Q 018967 306 -RTRDEISGVRQ 316 (348)
Q Consensus 306 -R~~~e~~~~~~ 316 (348)
-+.||++..++
T Consensus 264 ~l~~eei~~~k~ 275 (335)
T d1gpua1 264 PLKADDVKQLKS 275 (335)
T ss_dssp CCCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 26777776654
|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Maize (Zea mays) [TaxId: 4577]
Probab=99.80 E-value=1.4e-17 Score=159.21 Aligned_cols=149 Identities=22% Similarity=0.236 Sum_probs=116.0
Q ss_pred CccCCCccccchhHHHHHHHHHHHhC----------CCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYS----------KDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~----------~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|++|+++++|+|+|+|.|+. ..++.|+|++|||++++|.+|||+++|+.++|. +|+|+++|++
T Consensus 112 gve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~vl~GDGel~EG~~wEA~~~A~~~~L~NLi~i~D~N~~ 191 (338)
T d1itza1 112 GVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHI 191 (338)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred CccccCCcHHhhHHHHHHHHHHHHHHhccccccccccccceEEEEeCccccchHHHHHHHhHhhhhhccceeeeehhhcc
Confidence 67778999999999999999998853 246789999999999999999999999999997 7799999999
Q ss_pred ccccccccccCCchHHh--hcCCcceEEEcCC--CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC-CC-CCCCC
Q 018967 233 GMGTAEWRAAKSPSYYK--RGDYVPGLKVDGM--DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS-DP-GSTYR 306 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~--~g~gipg~~VDG~--D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~-D~-~~~YR 306 (348)
.+..+.+..... ++.+ .++|...+.|||+ |..++..+++.|... +++|++|.++|..++|-+.. +. ..+++
T Consensus 192 ~~dg~~~~~~~~-~~~~k~~a~Gw~vi~v~~g~~~~~~i~~a~~~a~~~--~~kPt~Iia~TikGkG~~~~e~~~~~Hg~ 268 (338)
T d1itza1 192 SIDGDTEIAFTE-DVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV--TDKPTLIKVTTTIGFGSPNKANSYSVHGS 268 (338)
T ss_dssp ETTEEGGGTCCS-CHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTCTTTTTSGGGTSS
T ss_pred ccccccccccCC-CHHHHHHhcCCeEEEeeCCchhHHHHHHHHHHHHHc--cCCCceeEeecCcccCcCccCCCcchhhc
Confidence 877655544333 4444 3577777887553 688899888887752 37899999999999998743 32 23454
Q ss_pred --CHHHHHHHH
Q 018967 307 --TRDEISGVR 315 (348)
Q Consensus 307 --~~~e~~~~~ 315 (348)
+.+|++..+
T Consensus 269 ~l~~ee~~~a~ 279 (338)
T d1itza1 269 ALGAKEVEATR 279 (338)
T ss_dssp CCCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 566666543
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=99.76 E-value=1.4e-18 Score=157.69 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=113.3
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
++.|.+|+++|.|+|+++|. +++.|||++|||++.++ ...|.+|+++++|+++||.||+ |++.....
T Consensus 49 ~~~g~mG~~lp~aiGa~~a~----p~~~vv~i~GDGsf~m~--~~eL~ta~~~~lpi~iiV~nN~~~~~i~~~~~~~~~~ 122 (229)
T d2djia3 49 PLFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKN 122 (229)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCTHHHHHHHHHCSC
T ss_pred CCcccccccchhhhhhhhhc----ccccccccccccccccc--cchhhhhhcccCCceEEEeCCchhhhhhHHHHhhcCC
Confidence 45799999999999999985 78899999999999775 3459999999999876666665 77532211
Q ss_pred ---cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC----CCCCCCCCCCCCCHHH
Q 018967 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH----GHSMSDPGSTYRTRDE 310 (348)
Q Consensus 240 ---~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~----GHs~~D~~~~YR~~~e 310 (348)
.....+||.+. ++|+++++|+ ++.++.+++++|++..+.++|+|||+.+.+-. .+...|+ . ..++++
T Consensus 123 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~A~~~~~~~~p~lIev~v~~~~~~p~~~~~~~~-~-~~~~~~ 198 (229)
T d2djia3 123 LFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKAGHTVVIDCKITQDRPIPVETLKLDS-K-LYSEDE 198 (229)
T ss_dssp CCSCBCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHTTCCEEEEEECCSCCCCCTTSCTTCT-T-TSCHHH
T ss_pred CCcCcCCCCChhhhhhccCccEEEEe--cHHHhHHHHHHHHHhcCCCCeEEEEEEeCCCCCCCccccccCc-c-ccCHHH
Confidence 12345788874 5999999997 68899999999987544489999999998743 2223343 2 346666
Q ss_pred HHHHHhcCCH--HHHHHHHHHHcCC
Q 018967 311 ISGVRQERDP--IERIRKLILAHDL 333 (348)
Q Consensus 311 ~~~~~~~~DP--i~~~~~~L~~~g~ 333 (348)
++...++-+. +..|+++|.++|+
T Consensus 199 ~~~~~e~~~~~~~~p~~~~le~~g~ 223 (229)
T d2djia3 199 IKAYKERYEAANLVPFREYLEAEGL 223 (229)
T ss_dssp HHHHHHHTTCTTCCCHHHHHHHTTC
T ss_pred HHHHHHhcccccCCchHHHHHHcCc
Confidence 6644322221 3345788887775
|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=99.70 E-value=1.2e-17 Score=151.36 Aligned_cols=119 Identities=21% Similarity=0.260 Sum_probs=91.9
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------c
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~ 239 (348)
++.|++|+++|.|+|+++|. +++.|||++|||++.+. ..| |.+|+++++|+++||.||+ |++.... .
T Consensus 52 ~~~g~mG~glpaAiGa~la~----p~~~Vv~i~GDG~f~m~-~~E-L~Ta~~~~lpi~~vV~NN~~yg~i~~~q~~~~~~ 125 (228)
T d2ez9a3 52 NLFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT-MQD-LATQVQYHLPVINVVFTNCQYGWIKDEQEDTNQN 125 (228)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH-GGG-HHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSS
T ss_pred cccccccccchhhhhhhhhh----ccceeEeecCCcccccc-chh-hhhhccccCceEEEEeccccchhhhhhhhhcccC
Confidence 45689999999999999985 78899999999999874 344 9999999999887776666 7653321 1
Q ss_pred ----cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018967 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (348)
Q Consensus 240 ----~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (348)
.....+||.+. ++|+++++|+ ++.++..++++|... .+++|+|||+.+.+-.
T Consensus 126 ~~~~~~l~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~al-~~~~p~lIev~vd~d~ 183 (228)
T d2ez9a3 126 DFIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKAI-AQHEPVLIDAVITGDR 183 (228)
T ss_dssp CCCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHHH-TTTSCEEEEEECCCCC
T ss_pred CcccccccCccHHhhccccccceEEeC--CHHHHHHHHHHHHHH-cCCCeEEEEEEECCCC
Confidence 12245788874 5999999996 577888899876532 2389999999987744
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=99.69 E-value=2.1e-17 Score=144.74 Aligned_cols=115 Identities=28% Similarity=0.392 Sum_probs=89.3
Q ss_pred cCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEE-ecCCcccccccc-----
Q 018967 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW----- 239 (348)
Q Consensus 166 ~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv-~NN~~~i~~~~~----- 239 (348)
.++.|.+|+++|.|+|+++|. +++.|||+.|||++.+. ..| +.+|+++++|+++|| +||+|++.....
T Consensus 56 ~~~~g~mG~~~p~AiGa~la~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpv~~iV~nN~~~g~~~~~~~~~~~ 129 (183)
T d1q6za3 56 FCAAGGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS-ISA-LWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEA 129 (183)
T ss_dssp ECTTCCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT-GGG-HHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTC
T ss_pred cccCCCcccchhHHHhhhhhc----cccceEEeccccccccc-cHH-HHHHHHhCCCEEEEEEeccccchhhhhhhcccc
Confidence 345688999999999999885 78899999999999875 334 899999999987555 555587643211
Q ss_pred -----cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 240 -----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 240 -----~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
...+.++|.+. ++|+++.+|+ ++.++.+++++|++ .+||+|||++|.
T Consensus 130 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~lieV~T~ 183 (183)
T d1q6za3 130 ENVPGLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEALS---AKGPVLIEVSTV 183 (183)
T ss_dssp CSCCSCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHHT---CSSCEEEEEEBC
T ss_pred cCcccccCCCccHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHh---CCCcEEEEEEeC
Confidence 11234577774 5999999996 79999999998875 499999999984
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.66 E-value=1.3e-16 Score=142.47 Aligned_cols=116 Identities=22% Similarity=0.312 Sum_probs=91.8
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
++.|.+|.++|.|+|+++|. +++.|||++|||++.+. ..| |.+|++++||+++||.||+ |++....+
T Consensus 49 ~~~g~mG~glpaaiGa~~A~----p~~~Vi~i~GDGsf~m~-~~E-l~Ta~r~~lpi~iiV~NN~~~g~i~~~q~~~~~~ 122 (208)
T d1ybha3 49 GGLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMN-VQE-LATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKA 122 (208)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHT-TTH-HHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTT
T ss_pred cccccchhhhhhHHHHHhcC----CCCcEEEEccCCchhhh-hhh-HHHHHHhCCCEEEEEEeccccccceehhhhcccc
Confidence 44689999999999999885 88899999999999875 345 9999999999876665555 77543211
Q ss_pred ------------cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 240 ------------RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 240 ------------~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
.....+||.+. ++|+++++|+ +++++.+++++|++ .++|+|||+.+-+-
T Consensus 123 ~~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~id~~ 185 (208)
T d1ybha3 123 NRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD---TPGPYLLDVICPHQ 185 (208)
T ss_dssp CCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH---SSSCEEEEEECCTT
T ss_pred cccccccccccccCCCCCCHHHhhccCCceEEEcC--CHHHHHHHHHHHHh---CCCCEEEEEEECCC
Confidence 11223578774 5999999996 79999999999986 49999999998653
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.65 E-value=1.2e-16 Score=141.67 Aligned_cols=113 Identities=21% Similarity=0.272 Sum_probs=89.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc--------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-------- 238 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-------- 238 (348)
+.|.+|+++|.|+|+++|. +++.|||+.|||++.+. . .+|.+++++++|+++||.||+ |++....
T Consensus 60 ~~g~mG~~lp~aiGa~~a~----p~~~Vv~i~GDGsf~~~-~-~el~t~~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~ 133 (198)
T d2ihta3 60 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN-S-SDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRS 133 (198)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT-G-GGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CcccchhHHHHHHHHhhhh----cccceEeeccccccccc-c-hhhhhhhhhhhhhhHHHhhccccceEeeeeccccccc
Confidence 4689999999999999885 78899999999999764 3 449999999999876666665 6653211
Q ss_pred ---ccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 239 ---WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 239 ---~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
......+||.+. ++|+++++|+ +++++.+++++|++ .++|+|||++|-
T Consensus 134 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~vd 186 (198)
T d2ihta3 134 HDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE---LGRPFLIEVPVN 186 (198)
T ss_dssp CGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT---SSSCEEEEEEBC
T ss_pred cccccccCCcchhhhccccCceEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEcC
Confidence 112245688874 5999999996 78899999998875 399999999984
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=3.1e-14 Score=139.25 Aligned_cols=133 Identities=20% Similarity=0.111 Sum_probs=96.0
Q ss_pred ccCCCccccchhHHHHHHHHHHHh-------CCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCccccc
Q 018967 165 FYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGT 236 (348)
Q Consensus 165 ~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~ 236 (348)
.....+.+|.+...++|.+.+.++ .+.+..|+|++|||++++|++|||+++|+.++|. +|+|+++|.+++..
T Consensus 132 ~~~~~~~~~~g~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~ 211 (415)
T d2ieaa2 132 WQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDG 211 (415)
T ss_dssp CCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSS
T ss_pred CcCCCchhhhHHHHHHHHHHHHHHHhhhccccCCCceEEEEecccccchHHHHHHHHHHHHhCCCeEEEEEeCCceeecc
Confidence 344556677766666666555432 3567889999999999999999999999999995 78999999998776
Q ss_pred ccccccC-CchHHh--hcCCcce---------------------------------------------------------
Q 018967 237 AEWRAAK-SPSYYK--RGDYVPG--------------------------------------------------------- 256 (348)
Q Consensus 237 ~~~~~~~-~~~~~~--~g~gipg--------------------------------------------------------- 256 (348)
+...... ..++.+ +++|...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~gw~v~~~~~~~~~~~~~~~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~ 291 (415)
T d2ieaa2 212 PVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAA 291 (415)
T ss_dssp BSCTTSCHHHHHHHHHHHTTCEEEEECBCGGGHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTGGGSHHHHT
T ss_pred ChhccccchHHHHHHHHhcCceeEEeecchhhhhhhccchhhhhhhhhhccccccceeccccchhhhhhhhccccchhhH
Confidence 5432111 011111 1122111
Q ss_pred ------------EEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018967 257 ------------LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 257 ------------~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (348)
+.+||+|+..+++++++|.+. .++|++|.++|.+.+|-...
T Consensus 292 l~~~l~~~~~~~l~~dGHd~~~l~~a~~~ak~~--~d~P~vI~a~TiKGkGlp~A 344 (415)
T d2ieaa2 292 LVADWTDEQIWALNRGGHDPKKIYAAFKKAQET--KGKATVILAHTIKGYGMGDA 344 (415)
T ss_dssp TSTTSCHHHHTTCCBGGGCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTCTTC
T ss_pred HHhhhhhhhhhhhhhccCchhhhHHHHHHHHhc--CCCceEEEEecccccCCCcc
Confidence 345999999999999999973 37799999999999987543
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=99.59 E-value=1.5e-15 Score=135.08 Aligned_cols=116 Identities=23% Similarity=0.289 Sum_probs=87.5
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Cccccccccc----c
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----A 241 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~~----~ 241 (348)
+..|.+|+++|.|+|+++|. +++.|||++|||++.+. ..+|.+|+++++|+++||.|| +|++...... .
T Consensus 48 ~~~g~mG~~l~aAiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~iiV~NN~~~g~~~~~~~~~~~~ 121 (204)
T d1zpda3 48 MQWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNN 121 (204)
T ss_dssp TTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGC
T ss_pred CCCcccchhhHHHHHHHHhC----CCCceeccccccceeee--ecccchhhhcccccceEEEecccccccceeccccccc
Confidence 45689999999999999985 78999999999999874 355999999999987665555 5776432221 1
Q ss_pred cCCchHHhh-----------cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 242 AKSPSYYKR-----------GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 242 ~~~~~~~~~-----------g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
...++|.+. ++|+++++|+ ++.++.+++++|+.. .+||+|||+.+-|
T Consensus 122 ~~~~d~~~~~~~~~~~~~a~~~g~~~~~v~--~~~el~~al~~al~~--~~gp~lieV~vd~ 179 (204)
T d1zpda3 122 IKNWDYAGLMEVFNGNGGYDSGAAKGLKAK--TGGELAEAIKVALAN--TDGPTLIECFIGR 179 (204)
T ss_dssp CCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC--CSSCEEEEEECCT
T ss_pred cchhhhhhhhhhcCcchhhhccCccEEEec--CHHHHHHHHHHHHHc--CCCcEEEEEEECc
Confidence 123454431 2578889995 789999999988751 3899999998743
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.59 E-value=1.2e-15 Score=138.03 Aligned_cols=116 Identities=27% Similarity=0.365 Sum_probs=92.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------- 238 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------- 238 (348)
++.|.+|+++|.|+|+++|. +++.|||++|||++.+. ..| |.+|++++||+++||.||+ |++....
T Consensus 60 ~~~g~mG~~~~aaiGa~lA~----p~r~Vv~i~GDGsf~m~-~~E-L~Ta~r~~l~i~iiV~nN~~~g~~~~~~~~~~~~ 133 (227)
T d1t9ba3 60 GGLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT-LTE-LSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEH 133 (227)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH-GGG-HHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTT
T ss_pred cccccchhhHHHHHHHHhcC----CCCeEEEeCCCcccccc-hHH-HHHHhhcCCceEEEEEecccccchhHHHhhhhcc
Confidence 45799999999999999985 88899999999999875 345 9999999999876666655 7643221
Q ss_pred ---ccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 239 ---WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 239 ---~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
......+||.+. ++|+++++|. +.+++.+|+++|++ .++|+|||+.+-+-
T Consensus 134 ~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lieV~vd~~ 188 (227)
T d1t9ba3 134 RYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS---TKGPVLLEVEVDKK 188 (227)
T ss_dssp CCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH---CSSCEEEEEEBCSS
T ss_pred ccccccCCCCCHHHHHhhcccceEeeC--CHHHHHHHHHHHHH---CCCCEEEEEEECCC
Confidence 112245688774 5999999995 78999999999986 39999999999764
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.58 E-value=8.1e-16 Score=135.49 Aligned_cols=115 Identities=18% Similarity=0.240 Sum_probs=89.5
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEE-ecCCcccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv-~NN~~~i~~~~~------ 239 (348)
+..|.+|+++|.|+|+++|. +++.||+++|||++.+.. .+|.+++++++|+++|| +||.|++.+...
T Consensus 51 ~~~g~mG~~l~~aiGa~la~----p~~~vi~i~GDG~f~~~~--~el~t~~~~~l~~~iiv~nN~~~~~~~~~~~~~~~~ 124 (192)
T d1ozha3 51 NGQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQSS--MELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQR 124 (192)
T ss_dssp CTTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHHT--THHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSS
T ss_pred cccccccccccchhHHHhhc----ccccceeecccccccchh--hhHHHHhhhcCceeEEEEcCCCccccccccccccCc
Confidence 35689999999999999985 788999999999998752 34889999999976555 555577653321
Q ss_pred ---cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ---~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+.+++|+ +++++.+++++|++ .+||+|||+.|.+
T Consensus 125 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~lIeV~vd~ 177 (192)
T d1ozha3 125 LSGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMD---VDGPAVVAIPVDY 177 (192)
T ss_dssp CCSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHH---SSSCEEEEEEBCC
T ss_pred cccCcCCCCCHHHHHHHhccccEEeC--CHHHHHHHHHHHHH---cCCcEEEEEEeCC
Confidence 11234678774 5999999996 67789999998876 3999999999853
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.56 E-value=2.2e-15 Score=133.05 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=84.7
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccccccccc----c-
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW----R- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~----~- 240 (348)
++.|.+|+++|.|+|+++|. +++.|||++|||++.++ ..+|.+|+++++|+++||.|| +|++..... +
T Consensus 50 ~~~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~i~iiV~nN~~~~~~~~~~~~~~~~ 123 (196)
T d1ovma3 50 PLWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRY 123 (196)
T ss_dssp TTTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG
T ss_pred CCCccccccchhhHHHHHhh----hccceecccccccceee--cccccccccccccceEEEEecCccccchhhhcccccc
Confidence 45689999999999999985 78899999999999875 356999999999987555555 587643211 1
Q ss_pred -ccCCchHHh--hcCC----cceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 -AAKSPSYYK--RGDY----VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 -~~~~~~~~~--~g~g----ipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....++|.+ .++| .++++|+ ++.++.+++++|++ .+||+|||+.+-|
T Consensus 124 ~~~~~~~~~~~a~~~g~~~~~~~~~v~--~~~el~~al~~a~~---~~gp~lIev~~~~ 177 (196)
T d1ovma3 124 NDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVAH---HERLSLIEVMLPK 177 (196)
T ss_dssp GCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHTT---CSSEEEEEEECCT
T ss_pred ccccccccchhHHhcCccccceeEEEe--cHHHHHHHHHHHHH---CCCcEEEEEEeCh
Confidence 112245544 2344 4677885 78888888887764 3999999998743
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=2.7e-15 Score=132.40 Aligned_cols=121 Identities=13% Similarity=0.081 Sum_probs=89.8
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeE-EEEecCCcccccccc--c---
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAI-LVCENNHYGMGTAEW--R--- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI-~Vv~NN~~~i~~~~~--~--- 240 (348)
...|.+|+++|.|+|+|+|.|...+++.|||++|||++.+. ..+|.+|+++++|++ +|++||+|++..... +
T Consensus 50 ~~~g~mG~~l~~aiG~alaa~~~~p~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~i~~iV~nN~~y~~~~~~~~~~~~~ 127 (196)
T d1pvda3 50 VLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQY 127 (196)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHTTSCTTCGG
T ss_pred CCcCcccccccchhHHHHHHHhcCCCCceeeccCccccccc--cccccccccccccceEEEEeCCccceeEeeccCcccc
Confidence 45699999999999999999999999999999999999765 345999999999976 455555687533211 1
Q ss_pred -ccCCchHHhh--cCCcce---EEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 -AAKSPSYYKR--GDYVPG---LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 -~~~~~~~~~~--g~gipg---~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. ++|.++ .+|+ ++.++.++++++.. ...++|+|||+.+-|
T Consensus 128 ~~~~~~d~~~la~a~G~~~~~~~~v~--~~~el~~al~~~~~-~~~~~~~lIeV~i~~ 182 (196)
T d1pvda3 128 NEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSF-NDNSKIRMIEIMLPV 182 (196)
T ss_dssp GCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTT-TSCSSEEEEEEECCT
T ss_pred ccCCCCCHHHHHHHhCCCCceEEEec--CHHHHHHHHHHHHH-hCCCCcEEEEEECCC
Confidence 1234577664 477665 4564 78888888876532 123789999998753
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=99.53 E-value=1.4e-14 Score=126.43 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=87.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc----c--
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE----W-- 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~----~-- 239 (348)
++.|.+|+++|.|+|.+ +. +++.||+++|||++.+. .. +|.+|+++++|+++||.||+ |...... .
T Consensus 54 ~~~g~mG~~l~~aig~~-a~----~~~~vv~i~GDGsf~~~-~~-el~ta~~~~l~i~iiV~NN~g~~~~~q~~~~~~~~ 126 (183)
T d2ji7a3 54 GTWGVMGIGMGYCVAAA-AV----TGKPVIAVEGDSAFGFS-GM-ELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVI 126 (183)
T ss_dssp TTTTCTTCHHHHHHHHH-HH----HCSCEEEEEEHHHHHTT-GG-GHHHHHHTTCCEEEEEEECSBSSCSCCCCSBTTBC
T ss_pred CCccccccccchhhhhh-cC----CcceEEEEEcCcchhhc-hh-hhhhhhhccccchhhhhhhhhhhhhhhcccccccc
Confidence 34689999999999876 33 57889999999999875 34 49999999999998888886 3221111 0
Q ss_pred --cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 --RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 --~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....++|.+. ++|+++++|+ +++++.+++++|++. ++|+|||+.|-+
T Consensus 127 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIev~idp 178 (183)
T d2ji7a3 127 SCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVAS---GKPCLINAMIDP 178 (183)
T ss_dssp CTTBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHHH---TSCEEEEEEBCT
T ss_pred ccccccccchhhhhhhcCCcEEEeC--CHHHHHHHHHHHHhC---CCcEEEEEEECC
Confidence 11234678774 5999999996 788999999998863 999999998854
|
| >d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR PP module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI species: Desulfovibrio africanus [TaxId: 873]
Probab=97.47 E-value=0.00033 Score=67.17 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=72.7
Q ss_pred HHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCC-cccccccccc----------c------CCch
Q 018967 185 AQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRA----------A------KSPS 246 (348)
Q Consensus 185 A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~~----------~------~~~~ 246 (348)
..+....+..||++.|||.+ ..| +..+.-|...+.++++||.||. |+++.-+... + ...|
T Consensus 162 ~~~d~~~k~~V~~~gGDG~~~dIG--~~~L~~A~~rg~nit~ivlDNe~Y~nTGgQ~S~~TP~Ga~t~ttp~Gk~~~kkd 239 (447)
T d2c42a2 162 AMSDLYTKKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKD 239 (447)
T ss_dssp TTGGGTSCCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCC
T ss_pred hhhhcccCCcEEEEecCccHhhcC--hHHHHHHHHcCCCceEEEEcCccccCCCCcCCCCCcCCeecccccCCCcCCCCC
Confidence 33444567889999999996 676 3558888899999988887777 7764322110 0 1113
Q ss_pred HHh--hcCCcceE-EE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 247 YYK--RGDYVPGL-KV-DGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 247 ~~~--~g~gipg~-~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
+.. .++|++.+ ++ .+.|+..+.+++++|.++ +||.+|++...
T Consensus 240 i~~ia~a~g~~YVA~~s~~~~~~~l~kaikeA~~~---~GpS~I~~~sP 285 (447)
T d2c42a2 240 LARMVMTYGYVYVATVSMGYSKQQFLKVLKEAESF---PGPSLVIAYAT 285 (447)
T ss_dssp HHHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHHS---SSCEEEEEECC
T ss_pred HHHHHHHCCCceEEEEeCCCCHHHHHHHHHHHHhC---CCCeEEEeecC
Confidence 333 45887765 55 478999999999999986 99999999853
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=93.89 E-value=0.098 Score=43.53 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHhhcCCcc
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGDYVP 255 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~~g~gip 255 (348)
-+|.|.+. ..++-.++++..|=|.+|. .-++.-|..-+.|+|+|+-+... ......-.......+.+ ...-.
T Consensus 57 ~~A~gyar---~tg~~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~Q~~d~~~~~~-~itk~ 129 (184)
T d2djia2 57 MAAVMQSK---FGGNLGVTVGSGGPGASHL---INGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYD-HIAVY 129 (184)
T ss_dssp HHHHHHHH---TTCCCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEESCGGGTTTTCTTCCCCHHHHH-TTCSE
T ss_pred HHHHhhhh---cccCcceeeccccccccch---hHhHHHHHHhCccceeecccchhhHhhcCcccccccccchh-hhcce
Confidence 34445443 3344455666667777763 45677888889999999865442 11111000001111111 11111
Q ss_pred eEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 256 GLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 256 g~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
..+|+ +++++.+.+++|+..+.. .||++|++-
T Consensus 130 ~~~v~--~~~~~~~~~~~A~~~a~~~rGPv~i~iP 162 (184)
T d2djia2 130 NRRVA--YAEQLPKLVDEAARMAIAKRGVAVLEVP 162 (184)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred eeccc--cchhhHHHHHHHHHHHhCCCCCEEEEeC
Confidence 24553 566777778888777766 899999985
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.80 E-value=0.11 Score=42.71 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|.|.+.. .++-.++++..|=|.+| ..-++..|...++|+|+|+-+.... ..... ....|.... .+-
T Consensus 56 ~~A~gyar~---tg~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~---~q~~d~~~l~~~~t 126 (175)
T d1t9ba2 56 HMAEGYARA---SGKPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGTDA---FQEADVVGISRSCT 126 (175)
T ss_dssp HHHHHHHHH---HSSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTSCC---TTCCCHHHHTGGGS
T ss_pred HHHHHHHHH---hCCceEEEEecCcHHHH---HHHHHHHHHHcCCCEEEEecCCChhhcCCCc---cccccHhHhcccce
Confidence 345566544 34445566666777776 3556888889999999999764431 11110 011122221 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
-...+| .++..+.+.+++|+..+++ .||+.|++-
T Consensus 127 k~~~~v--~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 162 (175)
T d1t9ba2 127 KWNVMV--KSVEELPLRINEAFEIATSGRPGPVLVDLP 162 (175)
T ss_dssp SEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eeeEec--CCHHHHHHHHHHHHHHHhcCCCccEEEEcC
Confidence 112345 3666777888888877776 679999984
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=93.63 E-value=0.16 Score=42.13 Aligned_cols=104 Identities=19% Similarity=0.179 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCccc---ccccccccCC---chHHh-
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM---GTAEWRAAKS---PSYYK- 249 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i---~~~~~~~~~~---~~~~~- 249 (348)
-+|.|.+... +.. .+++..|=|.+| ..-++.-|..-++|+|+|+-+..... +......... .+..+
T Consensus 54 ~mA~gyar~t---g~~-~v~~t~GpG~~N---~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (186)
T d1zpda2 54 FSAEGYARAK---GAA-AAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEM 126 (186)
T ss_dssp HHHHHHHHHH---SCE-EEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHH
T ss_pred hhhhhhhhcc---ccc-eeEeeccccchh---hhhhhhhhhhcccceEEEecccCcccccCCCcceeecCCcchhhhhhc
Confidence 3556665442 332 233446766665 35578888999999999986544321 1111111111 11111
Q ss_pred -hcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 250 -RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 250 -~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
+.+--...+|+ ++..+.+.+++|+..+.+ ++|+.|++-
T Consensus 127 ~~~vtk~~~~v~--~~~~~~~~i~~A~~~A~~~~~PV~l~iP 166 (186)
T d1zpda2 127 AKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIA 166 (186)
T ss_dssp HGGGCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred cCCceeeeeEcC--CHHHHHHHHHHHHHHHhhCCCCEEEECC
Confidence 11222235563 566677777777776666 789999984
|
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=93.63 E-value=0.13 Score=43.17 Aligned_cols=102 Identities=21% Similarity=0.190 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|-|.+.+. +.-.++++..|=|.+|. .-++..|..-+.|+|++.-+.... .+... ....|... +.+-
T Consensus 64 ~mAdgyar~t---g~~gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvlvi~g~~~~~~~~~~~---~q~~d~~~~~~~~t 134 (195)
T d1ybha2 64 FAAEGYARSS---GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTDA---FQETPIVEVTRSIT 134 (195)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTTC---TTCCCHHHHHGGGS
T ss_pred HHHHHHHHHH---CCCeEEEEecChHHHHH---HHHHHHHHHcCCCEEEEecCCcHHHhccCc---ccccchhhhhcccc
Confidence 4566666543 44556666677788873 456888888999999998764432 11110 01111111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
-...+| .+++.+.+++++|+..+.+ .||+.|++-
T Consensus 135 k~~~~v--~~~~~~~~~~~~A~~~a~~~r~GPV~l~iP 170 (195)
T d1ybha2 135 KHNYLV--MDVEDIPRIIEEAFFLATSGRPGPVLVDVP 170 (195)
T ss_dssp SEEEEC--CCGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred cchhhc--chHhhcchHHHHHHHHHhcCCCCcEEEECC
Confidence 112344 4677788888888877766 689999984
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=93.51 E-value=0.19 Score=41.70 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|-|.+.. .++-.++++..|=|.+| ..-++..|..-+.|+|+|.-+... ....... ....|... +.+--
T Consensus 52 ~A~gyar~---tg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~--~q~~d~~~~~~~~tk 123 (186)
T d2ihta2 52 AADVLARI---TGRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPNDT--HQCLDSVAIVAPMSK 123 (186)
T ss_dssp HHHHHHHH---HCSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTTTS--TTCCCHHHHHGGGSS
T ss_pred HHHHHhhc---cCCcceeeccccccccc---hhhhhhHHHHhhccceeeeccCcchhcccccc--ccccccccccCCcee
Confidence 44555543 34445666666888776 345577788889999998865432 2211111 11122221 11222
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
...+| .+++++.+.+++|+..+.+ .||++|++-
T Consensus 124 ~~~~v--~~~~~i~~~l~~A~~~a~s~~~GPv~l~iP 158 (186)
T d2ihta2 124 YAVEL--QRPHEITDLVDSAVNAAMTEPVGPSFISLP 158 (186)
T ss_dssp EEEEC--CSGGGHHHHHHHHHHHHTBSSCCCEEEEEE
T ss_pred ecccc--CCchhhhhHHHHHHHHHhcCCCeeEEEEeC
Confidence 23456 3677888888888888876 689999985
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=93.51 E-value=0.14 Score=42.15 Aligned_cols=102 Identities=16% Similarity=0.102 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-cc--ccccccccCCchHHhhcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GM--GTAEWRAAKSPSYYKRGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i--~~~~~~~~~~~~~~~~g~g 253 (348)
-+|-|.+.. .++-.++++..|=|.+|. .-++..|..-+.|+|+|+-+..- .. ...++. ....+.+ ..-
T Consensus 56 ~~A~gyar~---tgk~gv~~~t~GpG~~N~---~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~Q~~--d~~~~~~-~it 126 (174)
T d2ez9a2 56 MAAAADAKL---TGKIGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEM--NENPIYA-DVA 126 (174)
T ss_dssp HHHHHHHHH---HSSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCC--CCHHHHT-TTC
T ss_pred HHHHHHHhh---cCceeEEeecccccccch---hhhHHHHHhcCccceeeeccccccccCccccccc--hhhhhhc-ccc
Confidence 445565544 345556666678788773 45677888999999999866432 11 111110 1111111 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
-...+|. ++..+.+.+++|+..+.. .||++|++-
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~pGPv~l~iP 161 (174)
T d2ez9a2 127 DYNVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIP 161 (174)
T ss_dssp SEEEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred ccccccc--cHHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 1123443 455556666666655555 899999984
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=93.48 E-value=0.13 Score=42.62 Aligned_cols=102 Identities=12% Similarity=0.059 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|-|.+.. .++-.++++..|=|.+|. .-++..|..-+.|+|+|.-+... ..+... ....|... +.+-
T Consensus 56 ~~A~gyar~---tg~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~isg~~~~~~~~~~~---~q~~d~~~~~~~~t 126 (181)
T d1ozha2 56 FMAAAVGRI---TGKAGVALVTSGPGCSNL---ITGMATANSEGDPVVALGGAVKRADKAKQV---HQSMDTVAMFSPVT 126 (181)
T ss_dssp HHHHHHHHH---HSSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTC---------CCCHHHHHGGGC
T ss_pred HHHHHHHHh---cCCccceeeccchhhhhh---hhhHHHHhhcCCceeeeecccchhhccccc---cccccccccccccc
Confidence 445555544 344455666667777763 45677888889999999876553 222111 01112111 1122
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
-...+| .+++++.+.+.+|+..+.+ .||++|++-
T Consensus 127 k~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (181)
T d1ozha2 127 KYAIEV--TAPDALAEVVSNAFRAAEQGRPGSAFVSLP 162 (181)
T ss_dssp SEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred hheecc--CchhHHHHHHHHHHHHHhhCCCccEEEEcC
Confidence 222455 3566778888888877766 589999984
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=92.76 E-value=0.15 Score=42.43 Aligned_cols=106 Identities=11% Similarity=0.103 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hc
Q 018967 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RG 251 (348)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g 251 (348)
..-+|.|.+.+. ++-.++++..|=|.+| ..-++..|..-+.|+|+|+-+-.-. .+... ......|... +.
T Consensus 53 A~~~A~gyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~-~~~q~~d~~~~~~~ 125 (188)
T d2ji7a2 53 AGYAASIAGYIE---GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQ-GDYEEMDQMNVARP 125 (188)
T ss_dssp HHHHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTC-CCTTCCCHHHHTGG
T ss_pred hhhHHHHHHhhh---cccceeeccccccccc---cchhHHHHHHhcccceEEeccCchhhhcccc-cccceeeeecccCC
Confidence 334456666543 4445566666667666 3456778888899999988543211 11000 0011112211 11
Q ss_pred CCcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 252 DYVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 252 ~gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
+--...+|. +++++.+.++.|+..+.+ .||+.|++-
T Consensus 126 ~tk~~~~v~--~~~~i~~~~~~A~~~a~~~~~GPV~l~iP 163 (188)
T d2ji7a2 126 HCKASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLP 163 (188)
T ss_dssp GSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred cchhhhccc--cccccHHHHHHHHHHHhCCCCceEEEEcC
Confidence 111224553 566777777777777666 589999984
|
| >d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=92.73 E-value=0.59 Score=38.95 Aligned_cols=110 Identities=17% Similarity=0.133 Sum_probs=71.1
Q ss_pred CCccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCch
Q 018967 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (348)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~ 246 (348)
..|+-.+. +.+|.|+|... .-.++++++ ..+.+ ..++.+.++...++|+++|....++..+........-.|
T Consensus 68 ~~GIaEqnm~~iAaGla~~~----g~~p~~~t~--~~F~~-r~~~~ir~~~~~~~~v~~v~~~~g~~~g~dG~THq~ieD 140 (190)
T d1r9ja1 68 RFGVREHAMCAILNGLDAHD----GIIPFGGTF--LNFIG-YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVEL 140 (190)
T ss_dssp ECCSCHHHHHHHHHHHHHHS----SCEEEEEEE--GGGGG-GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSH
T ss_pred eeccchhhHHHHHHHHHHcC----CcceEEecc--hhhhc-cchHHHHHhcccCCceEEEEecCccccCCCCcchhHHHH
Confidence 56888876 68888888642 223444444 23333 346668888899999999998888766544333333445
Q ss_pred HHh-hcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 247 YYK-RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 247 ~~~-~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
++- |. +|.+.| .=-|..++..+++.|++. .++|+.|-+
T Consensus 141 la~~R~--iPn~~V~~PaD~~E~~~al~~a~~~--~~gP~yiRl 180 (190)
T d1r9ja1 141 VAALRA--MPNLQVIRPSDQTETSGAWAVALSS--IHTPTVLCL 180 (190)
T ss_dssp HHHHHH--STTCEEECCSSHHHHHHHHHHHHHC--TTCCEEEEC
T ss_pred HHHHHh--cCCEEEEecCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 544 33 343333 345788899999988862 389998753
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.72 E-value=0.18 Score=41.41 Aligned_cols=105 Identities=8% Similarity=0.021 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-ccc--ccccccCC---chHHh
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGT--AEWRAAKS---PSYYK 249 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~--~~~~~~~~---~~~~~ 249 (348)
.-+|.|.+.+. +. .++++..|=|.+| ..-++..|...++|+|+|+-++... ... ........ .++.+
T Consensus 54 ~~~A~gyar~t---~~-~~v~~t~GpG~~N---~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (180)
T d1pvda2 54 AYAADGYARIK---GM-SCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHR 126 (180)
T ss_dssp HHHHHHHHHHH---SC-EEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCCC--------CCSCSSSCSSHHHH
T ss_pred hHHHHHHhhcc---CC-ceeeeccccccch---hhHHHHHHHhhcccEEEEeccCCcccccccceeeecccccchhHHHH
Confidence 34466665542 22 3556667877776 3556777888899999998654432 111 11111111 11111
Q ss_pred --hcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 250 --RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 250 --~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
+..--...++. ++..+.+.++.|+..+.. +||+.|++-
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~gPv~i~iP 167 (180)
T d1pvda2 127 MSANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLP 167 (180)
T ss_dssp HHGGGCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HhhhheeEEEEcC--CHHHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 11111113442 344444555555544444 899999984
|
| >d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Escherichia coli [TaxId: 562]
Probab=92.32 E-value=0.44 Score=39.92 Aligned_cols=110 Identities=16% Similarity=0.204 Sum_probs=69.2
Q ss_pred CCccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCch
Q 018967 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (348)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~ 246 (348)
..|+-.+. +.+|.|+|... .-.+++.++ ++-....++.+.++...+.++++|+...+.+.+.......+-.|
T Consensus 74 ~~GIaEq~M~~iAaGlA~~g----~~~p~~stf---~~f~~~~~~~ir~~~~~~~~~v~v~~h~g~~~g~dG~THq~iED 146 (195)
T d2r8oa1 74 HYGVREFGMTAIANGISLHG----GFLPYTSTF---LMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQ 146 (195)
T ss_dssp ECCSCHHHHHHHHHHHHHHS----SCEEEEEEE---GGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSH
T ss_pred eeeeehhhHHHHHHHHHhhC----CceEEeecc---eeeeccccchhhccccccccceeeeccccccccccchhhHHHHH
Confidence 45777755 56678887641 122333333 33333567889999999999988887777665543333334456
Q ss_pred HHh-hcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 247 YYK-RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 247 ~~~-~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
++- |+ +|.+.| .=-|..++.++++.|++. .+||+.|-+
T Consensus 147 ia~lR~--iPn~~v~~P~D~~E~~~a~~~a~~~--~~gP~ylRl 186 (195)
T d2r8oa1 147 VASLRV--TPNMSTWRPCDQVESAVAWKYGVER--QDGPTALIL 186 (195)
T ss_dssp HHHHHT--STTCEEECCSSHHHHHHHHHHHHHC--SSSCEEEEC
T ss_pred HHHHHh--hCCcEEEecCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 554 44 444433 335788899999988862 379998743
|
| >d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.58 E-value=0.43 Score=40.03 Aligned_cols=110 Identities=20% Similarity=0.180 Sum_probs=66.4
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.+. +.+|.|+|+. +..-++++ ..=..+... ....+.+++..++|+++|..--+++.+........-.|+
T Consensus 77 ~GIaEq~m~~iaaGlA~~----G~~~~p~~-~t~~~f~~~-~~~~~~~~~~~~~~v~~v~t~~g~~~g~dG~THq~ieDi 150 (197)
T d1gpua2 77 YGIREHAMGAIMNGISAF----GANYKPYG-GTFLNFVSY-AAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETL 150 (197)
T ss_dssp CCSCHHHHHHHHHHHHHH----CTTCEEEE-EEEHHHHGG-GHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred cccchhhHHHHHHHHHHc----CCceeEEE-Eeehhhhhh-hHHHHHHhhhcCCceEEEEecccccccccccchhhHHHH
Confidence 5555554 3667777754 22112222 111233333 345577888899999999988887665443333334455
Q ss_pred Hh-hcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YK-RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~-~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
.- |+ +|.+.| .=-|..++.++++.|++. .+||+.|-+
T Consensus 151 a~~r~--iPn~~v~~PaD~~e~~~a~~~a~~~--~~gP~yiRl 189 (197)
T d1gpua2 151 AHFRS--LPNIQVWRPADGNEVSAAYKNSLES--KHTPSIIAL 189 (197)
T ss_dssp HHHHT--SSSCEEECCCSHHHHHHHHHHHHHC--SSCCEEEEC
T ss_pred HHHhc--CCCcEEEecCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 44 33 555544 335788889999988863 379998854
|
| >d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR Pyr module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I species: Desulfovibrio africanus [TaxId: 873]
Probab=90.85 E-value=0.65 Score=40.36 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCccc-ccccccccCCch-HHhhcCC
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPS-YYKRGDY 253 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i-~~~~~~~~~~~~-~~~~g~g 253 (348)
+..++|++++ +..+.+...-.+++ ...|.|..|.-.++|+++++.+-...- ..+. .....| +..+-.|
T Consensus 67 ~~~~~Ga~~a------G~r~~t~ts~~Gl~--~m~e~l~~a~~~~~P~V~~v~~r~~~~~~~~~--~~~q~d~~~~~~~g 136 (257)
T d2c42a1 67 AGAVHGALAA------GALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIAAHALSI--FGDHQDIYAARQTG 136 (257)
T ss_dssp HHHHHHHHHT------TCCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCCSSSBCC--SCCSHHHHTTTTSS
T ss_pred HHHHHHHHhc------CCCeEEEecchHHH--HHHHHHHHHHhcCCceEEEEEecCCCCCCCcc--ccchHHHHHHHhcc
Confidence 4556666654 33455554433333 367889999999999877766544321 1111 111122 2223356
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~ 299 (348)
++.+. -.++.+.++-...|.+.+.+ +-|+++-...+|. +|...
T Consensus 137 ~~~l~--~~s~QEa~d~~~~A~~lae~~~~Pv~~~~Dg~~~-sh~~~ 180 (257)
T d2c42a1 137 FAMLA--SSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRT-SHEIQ 180 (257)
T ss_dssp CEEEE--CCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTT-TTCEE
T ss_pred eEEEe--cCCHHHHHHHHHHHHHHHHHhCCCEEEEeccchh-cCCcC
Confidence 64444 45888888888888887777 8899999988885 56643
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=90.45 E-value=0.39 Score=39.47 Aligned_cols=104 Identities=19% Similarity=0.104 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|.|.+.. .++-.++++..|=|.+|. .-++..|..-+.|+|+|.-+-... .+.... ....|.... .+-
T Consensus 51 ~mA~gyar~---tgk~~v~~~~~GpG~~n~---~~gl~~A~~~~~Pvlvi~g~~~~~~~g~~~~--~q~~D~~~~~~~~t 122 (180)
T d1q6za2 51 GIADGYAQA---SRKPAFINLHSAAGTGNA---MGALSNAWNSHSPLIVTAGQQTRAMIGVEAL--LTNVDAANLPRPLV 122 (180)
T ss_dssp HHHHHHHHH---HTSCEEEEEEHHHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHTTTCT--TCCTTGGGSSTTSC
T ss_pred HHHHHHhhh---ccCcceEEeccccccccc---cceeHhhhhcccceeeecccccccccccccc--chhhheeecccccc
Confidence 355566544 345566777778788763 456888889999999988654321 111100 011122110 011
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+| .+++++.+.+++|+..+.. .||+.|++-.
T Consensus 123 K~~~~v--~~~~~i~~~l~~A~~~a~~~~~GPv~l~iP~ 159 (180)
T d1q6za2 123 KWSYEP--ASAAEVPHAMSRAIHMASMAPQGPVYLSVPY 159 (180)
T ss_dssp SCEECC--SSGGGHHHHHHHHHHHHHSSSCCCEEEEEEG
T ss_pred cccccC--CCHHHHHHHHHHHHHHHhcCCCccEEEEcCh
Confidence 112445 3677788888888877765 6899999863
|
| >d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.79 Score=38.16 Aligned_cols=100 Identities=21% Similarity=0.258 Sum_probs=56.7
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHH--------HCCCCeEEEEecCCc-ccccccccccCC
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAA--------LWDLPAILVCENNHY-GMGTAEWRAAKS 244 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa--------~~~LPvI~Vv~NN~~-~i~~~~~~~~~~ 244 (348)
+.+++|+|+|++ +...|+.+==..+..=.+.+-.|.|+ .+++|+|+.+-.... +.+. ...++.
T Consensus 62 ~~~G~a~G~A~~------G~rPive~~~~df~~~a~dqi~n~~ak~~~~~~g~~~~pvvir~~~g~~~g~g~-~Hs~~~- 133 (192)
T d2ozlb1 62 GFAGIAVGAAMA------GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAA-QHSQCF- 133 (192)
T ss_dssp HHHHHHHHHHHT------TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCG-GGCCCC-
T ss_pred HHHHHHHHHHhc------CCceEEEEEeccchhhhHHHHHhhhhhhhhhhCCcccceEEEEeccCCCCCccc-ccccch-
Confidence 345677787764 33344433333343333555566665 467888877765543 3222 111111
Q ss_pred chHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018967 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (348)
Q Consensus 245 ~~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (348)
..+. ..+||++| -=.++.+.+..++.|++ .++|+++-
T Consensus 134 ~~~~---~~~PGl~Vv~Ps~p~da~gll~~Ai~---~~~Pvi~~ 171 (192)
T d2ozlb1 134 AAWY---GHCPGLKVVSPWNSEDAKGLIKSAIR---DNNPVVVL 171 (192)
T ss_dssp HHHH---HTSTTCEEECCCSHHHHHHHHHHHHH---SSSCEEEE
T ss_pred HHhh---ccCCceEEEecCCHHHHHHHHHHHHh---CCCCEEEE
Confidence 1121 24677655 45689999999999996 48898653
|
| >d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Maize (Zea mays) [TaxId: 4577]
Probab=87.52 E-value=2.1 Score=35.41 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=68.2
Q ss_pred CCccccch-hHHHHHHHHHHHhCCCCc-EEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCc
Q 018967 168 GHGIVGAQ-IPLGCGLAFAQKYSKDET-VTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (348)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~-~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~ 245 (348)
..|+-.+. +.+|.|+|+. +.+. +.+..+ ..+.+. ....+.+++..++|+++|...-+++.+........-.
T Consensus 71 ~~GIaEq~m~~iAaGlA~~----~~G~~p~~~tf--~~F~~~-~~~~~~~~~~~~~~v~~v~~~~g~~~g~dG~TH~~ie 143 (192)
T d1itza2 71 RFGVREHGMGAICNGIALH----SPGFVPYCATF--FVFTDY-MRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIE 143 (192)
T ss_dssp CCCSCHHHHHHHHHHHHTT----CTTCEEEEEEE--GGGHHH-HHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSS
T ss_pred eeceecchHHHHHHHHHHh----cCCCEEEEEEE--hhhhhh-ccchhhhhccccccceEEEecCCcccccCCcccHHHH
Confidence 45666554 3666777652 2232 333333 345443 4556888889999999999888877665433333344
Q ss_pred hHHh-hcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 246 SYYK-RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 246 ~~~~-~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
|+.- |. +|.+.| .=-|..++..++++|+.. .+||+.|-+
T Consensus 144 Dia~~r~--iPn~~v~~P~d~~e~~~~~~~a~~~--~~gP~yiRl 184 (192)
T d1itza2 144 HLVSFRA--MPNILMLRPADGNETAGAYKVAVLN--RKRPSILAL 184 (192)
T ss_dssp HHHHHHS--SSSCEEECCCSHHHHHHHHHHHHHC--TTSCEEEEE
T ss_pred HHHHHhC--cCCceEEecCCHHHHHHHHHHHHHc--CCCCEEEEE
Confidence 5544 33 555444 335788899999988762 389998755
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| >d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module species: Pseudomonas putida [TaxId: 303]
Probab=86.79 E-value=1.5 Score=36.71 Aligned_cols=105 Identities=13% Similarity=-0.004 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEE--eCCccccchhHHHHHHHHH--------HCCCCeEEEEecCCcccccccccccCC
Q 018967 175 QIPLGCGLAFAQKYSKDETVTFAL--YGDGAANQGQLFEALNIAA--------LWDLPAILVCENNHYGMGTAEWRAAKS 244 (348)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~~--~GDGa~~~G~~~Ealn~Aa--------~~~LPvI~Vv~NN~~~i~~~~~~~~~~ 244 (348)
.+++|+|+|+. +..+|+. +.|=.+. .+.+-.|.++ .++.|+++..-...+.-+.+.. ..
T Consensus 64 ~vG~A~GlA~~------G~rPvve~~~~df~~~--a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g~~~~~g~~H---s~ 132 (204)
T d1qs0b1 64 IVGTAVGMGAY------GLRPVVEIQFADYFYP--ASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTH---SQ 132 (204)
T ss_dssp HHHHHHHHHHH------TCEEEEECSCGGGCGG--GHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSS---SC
T ss_pred ehhHHHHHhcC------CCcEEEEEEecchhhH--HHHHHHHHHHHhhcccccCcccceEEEcCcccccCccccc---cc
Confidence 35778888886 2334443 4444443 2344446665 4456776665543322111111 12
Q ss_pred chHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE--EecCC
Q 018967 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD--TYRYH 294 (348)
Q Consensus 245 ~~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~--t~R~~ 294 (348)
.+.+-. ..+|+++| -=.|+.+.+..++.|++ .++|+++--. .|+..
T Consensus 133 ~~~s~~-~~iPgl~Vv~Ps~~~da~~ll~~a~~---~~~Pvi~~e~k~ly~~~ 181 (204)
T d1qs0b1 133 SPEAMF-TQVCGLRTVMPSNPYDAKGLLIASIE---CDDPVIFLEPKRLYNGP 181 (204)
T ss_dssp CCHHHH-TTSTTCEEECCCSHHHHHHHHHHHHH---SSSCEEEEEEGGGSSSC
T ss_pred CHHHHH-hcCCCcEEEeeCCHHHHHHHHHHHHh---CCCcEEEEeeHHHhCCC
Confidence 222211 35777655 45689999999999886 4899866444 35544
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| >d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.23 E-value=3.5 Score=34.10 Aligned_cols=100 Identities=16% Similarity=-0.005 Sum_probs=55.2
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHH--------CCCCeEEEEecCC-cccccccccccCC
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAAL--------WDLPAILVCENNH-YGMGTAEWRAAKS 244 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~--------~~LPvI~Vv~NN~-~~i~~~~~~~~~~ 244 (348)
+.++.|+|+|++ +...|+.+-=..+.-=.+.+-.|.|+. ++.|+++-+-... ++.+ +...++
T Consensus 61 ~~~G~a~G~Al~------G~rpIve~~~~dF~~~a~dqi~n~aak~~~~sgg~~~~P~viR~~~G~g~~~g-~~HSqs-- 131 (192)
T d1w85b1 61 GIGGLAIGLALQ------GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTP-ELHSDS-- 131 (192)
T ss_dssp HHHHHHHHHHHT------TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCC-TTSSCC--
T ss_pred chHHHHHHHHhc------cCceEEEEEeccchhHHHHHHHHHHhhcchhcCCccccceEEEeccccccCCc-cccccC--
Confidence 445667887764 334444443333332234455566663 4688776665444 3332 222222
Q ss_pred chHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018967 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (348)
Q Consensus 245 ~~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (348)
+...=..+||++| -=.++.+.+..++.|++ .+.|+++-
T Consensus 132 --~e~~f~~~PGlkVv~Ps~p~Da~gll~~Ai~---~~~Pvi~~ 170 (192)
T d1w85b1 132 --LEGLVAQQPGLKVVIPSTPYDAKGLLISAIR---DNDPVIFL 170 (192)
T ss_dssp --CHHHHTTSTTCEEECCSSHHHHHHHHHHHHH---SSSCEEEE
T ss_pred --HHHHhhcCCCeeEEeeCCHHHHHHHHHHHHh---CCCCEEEE
Confidence 1221135777755 44688888888888885 48898443
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| >d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.93 E-value=4.1 Score=33.90 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHH--------CCCCeEEEE-ecCCcccccccccccCCc
Q 018967 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAAL--------WDLPAILVC-ENNHYGMGTAEWRAAKSP 245 (348)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~--------~~LPvI~Vv-~NN~~~i~~~~~~~~~~~ 245 (348)
.++.|+|+|++ +...|+-+-=..+..-.+.+-.|.++. ++.|+|++. --..++.+.+...+...
T Consensus 78 ~~G~a~G~A~~------G~rPive~~f~dF~~~a~dqi~n~~ak~~~~~~g~~~~~~vv~~~~~g~~~~g~~~HSq~~~- 150 (203)
T d2bfdb1 78 IVGFGIGIAVT------GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPE- 150 (203)
T ss_dssp HHHHHHHHHHT------TCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSCGGGSSCCCH-
T ss_pred ecchhhhhhhc------ccceEEEEEehhhhhhhHHHHHHHHhhhhcccCCccccccceeeeccccCccccccccccHH-
Confidence 34567888765 223333333333433345556677765 345544443 33333333222222211
Q ss_pred hHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018967 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (348)
Q Consensus 246 ~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (348)
.+. ..+|+++| -=.++.+.+..++.|++ .++|+++-
T Consensus 151 ~~~---~~~PGl~Vv~Ps~p~Da~gll~~ai~---~~~Pvi~~ 187 (203)
T d2bfdb1 151 AFF---AHCPGIKVVIPRSPFQAKGLLLSCIE---DKNPCIFF 187 (203)
T ss_dssp HHH---HTSTTCEEECCSSHHHHHHHHHHHHH---SSSCEEEE
T ss_pred HHH---cCCCCcEEEecCCHHHHHHHHHHHHh---CCCcEEEE
Confidence 121 13666655 34589999999998886 48898663
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