Citrus Sinensis ID: 018970

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MLDRLRLHVYPKEPLTCAKLTQYASLKLETKRRAKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALTAEMPRRVSKSRSKVQANRPGIIR
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHccccccHHHcccccccEEEEEcHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccEEEEcccccHHHHHHHHHHcccEEEEEcccHHHHHHHHHHccccccccccccccEEEEEccccccccccccEEEEEEccccccccHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccHHHHHHHHHHcccEEEEEEEcccccccccEEEEEEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccccccHHHHHHHHHHHHHHHHcccccHHHHEccccHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccHcHHHHHHHHHHcccccccccccEEEEEccccccHHcHHHHHHHHccEcEEcccHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEcccccccEcccccccccccHHHHHHHHHHcccEEEEHHHcccccHHcccEEEEEEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mldrlrlhvypkepltcaklTQYASLKLEtkrrakptlhllhvGRRKEKlrsaeagaaadpkhkessamevsgldsdgkefKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGvlggfgnvnevdIKGSEAFLQMLLSdrfpnarnnqHLVALDCGSGIGRITKNLLIRYFnevdllepvSHFLDAAReslapenhmapdmhkatnffcvplqdftpetgrydviWVQWcighltdddFVSFFKRAkvglkpggffvlkeniarsgfvldkedrsitrsdFYFKELFSrcglhiykskdqkglpeELFAVKMYALTAemprrvsksrskvqanrpgiir
Flexible Loop (DISEMBL)
mldrlrlhvypkepltcakltqyaslkletkrrakptlhllhvgrrkeklrsaeagaaadpkhkessamevsgldsdgkEFKNAEEMWReqigedgeqqekKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLkpggffvlkeniarsgfvldkedrsitrSDFYFKELFSRCGLhiykskdqkglpEELFAVKMYALTaemprrvsksrskvqanrpgiir
Low Complexity Region (SEG)
MLDRLRLHVYPKEPLTCAKLTQYASLKLETKRRAKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALTAEMPRRVSKSRSKVQANRPGIIR
Disordered region (IsUnstruct)
*****RLHVYPKEPLTCAKLTQYASLKLE********LHLLH*************************************************************QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA*************MHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALT***********************
Disordered Region (DISOPRED)
**DRLRLHVYPKEPLTCAKLTQYASLKLETKRRAKPTLHLLHVGRR****************************DSDGKEFKNAEEMW****************WYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSD*******NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL************************
Disordered Region (DISEMBL)
MLDRLRLHVYPKEPLTCAKLTQYASLKLETKRRAKPTLHLLHVGR*********************************KEFKNAEEMWREQI***********QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALTAEM********************
Disordered Region (DISPRO)
*LDRLRLHVYPKEPLTCAKLTQYASLKLETKRRAKPTLHLLHVGRR****R*********************************EEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALTAE*********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDRLRLHVYPKEPLTCAKLTQYASLKLETKRRAKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALTAEMPRRVSKSRSKVQANRPGIIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q5PP70	276	Alpha N-terminal protein	no	no	0.790	0.996	0.718	1e-119
A2XMJ1	307	Alpha N-terminal protein	N/A	no	0.798	0.905	0.581	1e-101
Q10CT5	307	Alpha N-terminal protein	yes	no	0.798	0.905	0.577	1e-100
Q55DH6	270	Alpha N-terminal protein	yes	no	0.689	0.888	0.408	5e-50
Q6NWX7	223	N-terminal Xaa-Pro-Lys N-	yes	no	0.620	0.968	0.435	5e-49
Q4KL94	224	N-terminal Xaa-Pro-Lys N-	N/A	no	0.632	0.982	0.407	2e-48
B1H2P7	224	N-terminal Xaa-Pro-Lys N-	yes	no	0.632	0.982	0.403	6e-48
Q4KLE6	223	N-terminal Xaa-Pro-Lys N-	N/A	no	0.629	0.982	0.394	1e-47
Q8R2U4	223	N-terminal Xaa-Pro-Lys N-	yes	no	0.629	0.982	0.403	2e-46
Q9BV86	223	N-terminal Xaa-Pro-Lys N-	yes	no	0.629	0.982	0.407	3e-46

>sp|Q5PP70|NTM1_ARATH Alpha N-terminal protein methyltransferase 1 OS=Arabidopsis thaliana GN=At5g44450 PE=2 SV=1

 Score =  428 bits (1100), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/281 (71%), Positives = 239/281 (85%), Gaps = 6/281 (2%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
           M++ G+DS+GKEF + +EMWRE+IGE  E   KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1   MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58

Query: 129 NVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
           +VN+ DI GSE FL+ LL +R   N   NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59  HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118

Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
           PV+ FLDAARE+LA       + HKATNFFCVPLQ+FTP  GRYDVIWVQWCIGHLTD+D
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTDND 175

Query: 248 FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK 307
           FVSFF RAK  LKPGGFFV+KEN+A++GFVLDKED SITRSD YFK+LF +CGLH+Y++K
Sbjct: 176 FVSFFNRAKGYLKPGGFFVVKENLAKNGFVLDKEDHSITRSDPYFKQLFRQCGLHLYRTK 235

Query: 308 DQKGLPEELFAVKMYALTAEMPRRVSKSRSKVQANRPGIIR 348
           DQKGLP+ELFAVKMYALT + P ++ ++RSK ++NRP II+
Sbjct: 236 DQKGLPQELFAVKMYALTVDTPPKIHRTRSKTRSNRPQIIK 276

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 4

>sp|A2XMJ1|NTM1_ORYSI Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. indica GN=OsI_13745 PE=3 SV=1

 Score =  369 bits (947), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/308 (58%), Positives = 221/308 (71%), Gaps = 30/308 (9%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQE---------------------------- 100
           M+  G DS+G+EF +A EMW  +IG   +                               
Sbjct: 1   MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEQEAGGGG 60

Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
           K+ +WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF  AR  +HLV
Sbjct: 61  KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118

Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
           ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L     +  D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK 280
           LQDFTP+ GRYDVIW+QWCIG L DDDF+SFF RAK+GLKP GFFVLKENIAR+GFVLDK
Sbjct: 179 LQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKIGLKPNGFFVLKENIARNGFVLDK 238

Query: 281 EDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALTAEMPRRVSKSRSKVQ 340
           ED SITRSD YFKELF +CGL+I+  KDQ  LP+ELFAVKMYAL  E P+     + +  
Sbjct: 239 EDNSITRSDAYFKELFKKCGLYIHSIKDQSDLPKELFAVKMYALVTEKPKIQKNGKRRRP 298

Query: 341 ANRPGIIR 348
            N P +IR
Sbjct: 299 KNSPRMIR 306

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|Q10CT5|NTM1_ORYSJ Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os03g0780900 PE=2 SV=2

 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/308 (57%), Positives = 218/308 (70%), Gaps = 30/308 (9%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQ------------------------ 104
           M+  G DS+G+EF +A EMW  +IG   +                               
Sbjct: 1   MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEEEAGGGG 60

Query: 105 ----WYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
               WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF  AR  +HLV
Sbjct: 61  KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118

Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
           ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L     +  D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK 280
           LQDFTP+ GRYDVIW+QWCIG L DDDF+SFF RAK+GLKP GFFVLKENIAR+GFVLDK
Sbjct: 179 LQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKIGLKPNGFFVLKENIARNGFVLDK 238

Query: 281 EDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALTAEMPRRVSKSRSKVQ 340
           ED SITRSD YFKELF +CGL+I+  KDQ  LP+ELFAVKMYAL  E P+     + +  
Sbjct: 239 EDNSITRSDAYFKELFKKCGLYIHSIKDQSDLPKELFAVKMYALVTEKPKIQKNGKRRRP 298

Query: 341 ANRPGIIR 348
            N P +IR
Sbjct: 299 KNSPRMIR 306

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|Q55DH6|NTM1_DICDI Alpha N-terminal protein methyltransferase 1 OS=Dictyostelium discoideum GN=DDB_G0269658 PE=3 SV=1

 Score =  198 bits (504), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 105/257 (40%), Positives = 157/257 (61%), Gaps = 17/257 (6%)

Query: 72  SGLDSDGKEFKNAEEMWREQI-GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNV 130
           SGLD +G  + N E++W++++ G+D + ++K   WY+    YW+GVEA+VDG+LGG   V
Sbjct: 24  SGLDGEGNTYINIEDLWKKELEGKDNKMEDK---WYKSADEYWKGVEATVDGMLGGLAQV 80

Query: 131 NEVDIKGSEAFLQMLL--SDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLE 187
           + +D+  S+ F+Q  +  +D  P    N   +ALDCG+GIGR+ K  L+   F  VDL+E
Sbjct: 81  SPIDVVASKVFIQDFIKGTDSRPPINLN---LALDCGAGIGRVAKEFLLPIGFKNVDLVE 137

Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
               FLD A+      +    D ++  N++ V LQDFT E  +YD IW+QW IGHL D D
Sbjct: 138 QNKLFLDKAK------SDNFKDDNRVENYYAVGLQDFTFEK-KYDCIWIQWVIGHLHDLD 190

Query: 248 FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK 307
           F+ F K+    L P G   +K+N A+  F++DKED S++R++ + K LF + G  + KS 
Sbjct: 191 FIEFLKKCMDSLTPNGIICIKDNCAKKRFIMDKEDNSVSRTEDHLKYLFDQAGCKLLKSM 250

Query: 308 DQKGLPEELFAVKMYAL 324
            Q   P+ELF V M+AL
Sbjct: 251 VQPNFPKELFPVLMFAL 267

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|Q6NWX7|NTM1A_DANRE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Danio rerio GN=ntmt1 PE=2 SV=1

 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 98/225 (43%), Positives = 132/225 (58%), Gaps = 9/225 (4%)

Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
           E +T +Y E   YW+ V  +VDG+LGG+G+++ +DI GS+ FLQ  L +           
Sbjct: 7   EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63

Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
            ALDCG+GIGRITK LL+  F  VDL++    FLD AR  L  E+       +  N+FC 
Sbjct: 64  CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117

Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD 279
            LQDF P+  RYDVIW+QW IGHLTDD  V F +R + GL+P G  V+K+N+A  G + D
Sbjct: 118 GLQDFQPQPERYDVIWIQWVIGHLTDDHLVEFLRRCRSGLRPEGLIVVKDNVAYEGVIPD 177

Query: 280 KEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
             D S+ R       L +R GL I   + Q+  PEE++ V   AL
Sbjct: 178 DVDSSVCRDLNVLHRLVARAGLSIIYEEQQQNFPEEIYQVHALAL 222

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|Q4KL94|NT1AA_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-A OS=Xenopus laevis GN=ntmt1-a PE=2 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/228 (40%), Positives = 140/228 (61%), Gaps = 8/228 (3%)

Query: 97  EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
           E  E +TQ+Y +  +YW+ V  +VDG+LGG+G+++ VD+ GS+ FLQ  L     N   N
Sbjct: 4   ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63

Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
               ALDCG+GIGRITK LL+  F  VD+++    FL+ A+  L  E        +  N+
Sbjct: 64  A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115

Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF 276
           FC  LQ+F+PE  RYDVIW+QW IGHLTD+  V+F +R ++GL+P G  V+K+N+ +   
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVNFLQRCRLGLRPNGIIVIKDNVTQDAS 175

Query: 277 VLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
           ++D  D SI R     ++L  + GL I   + Q+  P+E++ V  +A+
Sbjct: 176 IMDDVDSSICREIDLVRKLIKQAGLSILAVERQENFPDEIYHVFSFAM 223

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|B1H2P7|NTM1A_XENTR N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Xenopus tropicalis GN=ntmt1 PE=2 SV=1

 Score =  191 bits (485), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 92/228 (40%), Positives = 138/228 (60%), Gaps = 8/228 (3%)

Query: 97  EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
           E  E + Q+Y +   YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ  L     N   N
Sbjct: 4   ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63

Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
            +  ALDCG+GIGRITK LL+  F +VD+++    FL  A+  L  E        +  N+
Sbjct: 64  MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115

Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF 276
           FC  LQ+F+PE  RYDVIW+QW IGHLTD+  V F KR  +GL+P G  V+K+N+ +   
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVDFLKRCSLGLRPNGIIVIKDNVTQDVS 175

Query: 277 VLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
           ++D  D SI R     ++L  + GL +   + Q+  P+E++ V  +A+
Sbjct: 176 IMDDVDSSICRDIDLVRKLIKQAGLSLLAVERQENFPDEIYHVFSFAM 223

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|Q4KLE6|NT1AB_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-B OS=Xenopus laevis GN=ntmt1-b PE=2 SV=1

 Score =  191 bits (484), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/228 (39%), Positives = 141/228 (61%), Gaps = 9/228 (3%)

Query: 97  EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
           E  E +TQ+Y +  +YW+ V A+VDG+LGG+G+++  D+  S+ FLQ  L +    ++  
Sbjct: 4   ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60

Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
            +  ALDCG+GIGRITK LL+  F  VD+++    FL+ A+  L  E        +   +
Sbjct: 61  GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114

Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF 276
           FC  LQ+F+PE  RYDVIW+QW IGHLTD+  VSF +R K+GL+P G  ++K+N+ + G 
Sbjct: 115 FCCGLQEFSPEPSRYDVIWIQWVIGHLTDEHLVSFLQRCKLGLRPNGIILIKDNVTQDGS 174

Query: 277 VLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
           ++D  D SI R     ++L  + GL +   + Q+  P+E++ V  +A+
Sbjct: 175 IMDDADSSICRDIDLVRKLIKQAGLSVLAIERQENFPDEIYQVFSFAM 222

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|Q8R2U4|NTM1A_MOUSE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Mus musculus GN=Ntmt1 PE=2 SV=3

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/228 (40%), Positives = 134/228 (58%), Gaps = 9/228 (3%)

Query: 97  EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
           E  E + Q+Y +  +YW+ +  +VDG+LGG+G+++ +D+  S  FLQ  L +  PN    
Sbjct: 4   EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREG-PNKTGT 62

Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
               ALDCG+GIGRITK LL+  F  VD+++    FL  A+  L  E        +  N+
Sbjct: 63  S--CALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGK------RVRNY 114

Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF 276
           FC  LQDF+PE G YDVIW+QW IGHLTD     F +R K GL+P G  V+K+N+A+ G 
Sbjct: 115 FCCGLQDFSPEPGSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGV 174

Query: 277 VLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
           +LD  D S+ R     + +    GL +   + Q+ LP+E++ V  +AL
Sbjct: 175 ILDDVDSSVCRDLEVVRRIIRTAGLSLLAEERQENLPDEIYHVYSFAL 222

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1 (By similarity). Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|Q9BV86|NTM1A_HUMAN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Homo sapiens GN=NTMT1 PE=1 SV=3

 Score =  186 bits (471), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/228 (40%), Positives = 133/228 (58%), Gaps = 9/228 (3%)

Query: 97  EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
           E  E + Q+Y +  +YW+ +  +VDG+LGG+G+++ +DI  S  FLQ  L +  PN    
Sbjct: 4   EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGT 62

Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
               ALDCG+GIGRITK LL+  F EVD+++    FL  A+  L  E        +  N+
Sbjct: 63  S--CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNY 114

Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF 276
           FC  LQDFTPE   YDVIW+QW IGHLTD     F +R K  L+P G  V+K+N+A+ G 
Sbjct: 115 FCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV 174

Query: 277 VLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
           +LD  D S+ R     + +    GL +   + Q+ LP+E++ V  +AL
Sbjct: 175 ILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFAL 222

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
255586233	276	Protein C9orf32, putative [Ricinus commu	0.790	0.996	0.795	1e-132
224115626	276	predicted protein [Populus trichocarpa]	0.793	1.0	0.771	1e-129
356528088	336	PREDICTED: alpha N-terminal protein meth	0.885	0.916	0.680	1e-124
356510746	278	PREDICTED: alpha N-terminal protein meth	0.790	0.989	0.736	1e-120
297791381	335	hypothetical protein ARALYDRAFT_494541 [	0.801	0.832	0.713	1e-119
145358849	334	methyltransferase [Arabidopsis thaliana]	0.798	0.832	0.714	1e-118
449433531	275	PREDICTED: alpha N-terminal protein meth	0.790	1.0	0.714	1e-118
358348179	348	Methyltransferase-like protein 11A [Medi	0.790	0.790	0.706	1e-117
75321280	276	RecName: Full=Alpha N-terminal protein m	0.790	0.996	0.718	1e-117
242032801	304	hypothetical protein SORBIDRAFT_01g00629	0.798	0.914	0.6	1e-102

>gi|255586233|ref|XP_002533771.1| Protein C9orf32, putative [Ricinus communis] gi|223526308|gb|EEF28616.1| Protein C9orf32, putative [Ricinus communis]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 222/279 (79%), Positives = 247/279 (88%), Gaps = 4/279 (1%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
           MEV+G DSDG+EFKNAEEMWREQ G DG    KKTQWYR+G+SYW+GVEASVDGVLGG+G
Sbjct: 1   MEVTGTDSDGREFKNAEEMWREQTG-DGT---KKTQWYRDGVSYWQGVEASVDGVLGGYG 56

Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
            VN+ DIKGSEAFLQ L S+ F +    +HLVALDCGSGIGR+TKNLLIRYFNEVDLLEP
Sbjct: 57  QVNDADIKGSEAFLQTLFSELFVDGGLGRHLVALDCGSGIGRVTKNLLIRYFNEVDLLEP 116

Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
           VSHFLDAAR+SL  ENHMA D HKATNFFC PLQ+FTP+ G YDVIWVQWCIGHLTDDDF
Sbjct: 117 VSHFLDAARDSLINENHMASDTHKATNFFCTPLQEFTPDAGHYDVIWVQWCIGHLTDDDF 176

Query: 249 VSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD 308
           VSFF RAK+GLKPGGFFVLKEN+AR+GFVLD EDRSITRSD YFKELFSRCGLH+YKSK+
Sbjct: 177 VSFFMRAKIGLKPGGFFVLKENVARNGFVLDNEDRSITRSDLYFKELFSRCGLHLYKSKE 236

Query: 309 QKGLPEELFAVKMYALTAEMPRRVSKSRSKVQANRPGII 347
           Q+G+P+ELFAVKMYAL  +MPR +SK+RSK Q NRPGII
Sbjct: 237 QRGMPKELFAVKMYALLTDMPRNISKTRSKTQVNRPGII 275

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115626|ref|XP_002317082.1| predicted protein [Populus trichocarpa] gi|222860147|gb|EEE97694.1| predicted protein [Populus trichocarpa]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/280 (77%), Positives = 249/280 (88%), Gaps = 4/280 (1%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
           ME +G DSDG+EFKN +EMW E  G+      KKTQWYR+G++YWEGVEASV+GVLGG+G
Sbjct: 1   MEAAGTDSDGREFKNPDEMWLEHTGD----TNKKTQWYRDGVAYWEGVEASVNGVLGGYG 56

Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
           +VN+ D+KGSE FLQ LL++ F +   ++HLVALDCGSGIGRITKNLLIR+FNEVDLLEP
Sbjct: 57  HVNDADVKGSEGFLQTLLAELFVDGGIDRHLVALDCGSGIGRITKNLLIRFFNEVDLLEP 116

Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
           VSHFLDAARE+L  ENHMA D HKATNF+CVPLQ+FTP+ GRYDVIWVQWCIGHLTDDDF
Sbjct: 117 VSHFLDAARENLVQENHMALDKHKATNFYCVPLQEFTPDAGRYDVIWVQWCIGHLTDDDF 176

Query: 249 VSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD 308
           VSFF RAK+GLKPGGFFVLKEN+ARSGFVLDKEDRSITRSD YFK LFSRCGLH+YKS++
Sbjct: 177 VSFFNRAKIGLKPGGFFVLKENLARSGFVLDKEDRSITRSDSYFKGLFSRCGLHLYKSRE 236

Query: 309 QKGLPEELFAVKMYALTAEMPRRVSKSRSKVQANRPGIIR 348
           QKGLP+ELFAVKMYALT ++P+R  K+RSKVQANRPGII+
Sbjct: 237 QKGLPKELFAVKMYALTTDIPKRAIKARSKVQANRPGIIK 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528088|ref|XP_003532637.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/313 (68%), Positives = 250/313 (79%), Gaps = 5/313 (1%)

Query: 36  PTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED 95
           P+  LL    R   L ++   + + P ++++S M+ +GLDSDG+EFK  E+MWREQ G+ 
Sbjct: 27  PSFSLLSTRTRTLGLTASCYSSFSFPSYRKTSCMDAAGLDSDGREFKTPEDMWREQAGD- 85

Query: 96  GEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNA-R 154
                KKTQWYR+G+SYWEGV+A++DGVLGGF NVNE DI  SE FL +L S+RF  A  
Sbjct: 86  ---PSKKTQWYRDGVSYWEGVKANMDGVLGGFANVNEPDITCSEDFLNILFSERFHAADA 142

Query: 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214
            +Q LV LDCGSGIGR+TKNLLIRYFNEVDLLEPVSHFL+ ARE+LA       DMHKA 
Sbjct: 143 RHQPLVVLDCGSGIGRVTKNLLIRYFNEVDLLEPVSHFLETARETLALGCQTNSDMHKAV 202

Query: 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274
           NF+CVPLQDFTP+T RYDVIW+QWCIGHLTD+DFVSFFKRAKVGLKPGGFFVLKENIARS
Sbjct: 203 NFYCVPLQDFTPDTARYDVIWIQWCIGHLTDEDFVSFFKRAKVGLKPGGFFVLKENIARS 262

Query: 275 GFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALTAEMPRRVSK 334
           GFVLD EDRS+TRSD YFKELFSRCGLH+YKSKDQKG PEELFAVKMYALT + P++  +
Sbjct: 263 GFVLDNEDRSVTRSDLYFKELFSRCGLHVYKSKDQKGFPEELFAVKMYALTTDPPKKAPR 322

Query: 335 SRSKVQANRPGII 347
           ++SK   NRP  I
Sbjct: 323 AKSKTSTNRPRTI 335

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510746|ref|XP_003524095.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max]

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/281 (73%), Positives = 234/281 (83%), Gaps = 6/281 (2%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
           M+  GLDSDG+EF  AE+MWREQ G+      KKTQWYR+G+SYWEGV+A++DGVLGGF 
Sbjct: 1   MDAGGLDSDGREFNTAEDMWREQAGD----PSKKTQWYRDGVSYWEGVKANMDGVLGGFA 56

Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARN--NQHLVALDCGSGIGRITKNLLIRYFNEVDLL 186
           NVNE DI  SE FL +LLS+RFP A +   Q LVALDCGSGIGR+TKNLLIRYFNEVDLL
Sbjct: 57  NVNEPDISCSEDFLNILLSERFPPAADARRQPLVALDCGSGIGRVTKNLLIRYFNEVDLL 116

Query: 187 EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDD 246
           EPVSHFL+ ARE+LA       DMHKA NF+CVPLQDFTP+T RYDVIW+QWCIGHLTD+
Sbjct: 117 EPVSHFLETARETLASGCQTNSDMHKAVNFYCVPLQDFTPDTARYDVIWIQWCIGHLTDE 176

Query: 247 DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS 306
           DFVSFFK AKVGLK GGFFVLKENIARSGFVLD EDRS+TRSD YFKELFSRCGLH+YKS
Sbjct: 177 DFVSFFKSAKVGLKAGGFFVLKENIARSGFVLDNEDRSVTRSDLYFKELFSRCGLHVYKS 236

Query: 307 KDQKGLPEELFAVKMYALTAEMPRRVSKSRSKVQANRPGII 347
           KDQKG PEELFAVKMYALT + P++  +++SK   NRP  I
Sbjct: 237 KDQKGFPEELFAVKMYALTTDPPKKAPRAKSKTSTNRPRTI 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791381|ref|XP_002863575.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata] gi|297309410|gb|EFH39834.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/283 (71%), Positives = 240/283 (84%), Gaps = 4/283 (1%)

Query: 66  SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
           S +ME+ G+DS+GKEF + +EMWRE+IGE+G++  +KTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 57  SESMEICGVDSEGKEFNSVQEMWREEIGEEGDET-RKTQWYRDGVSYWEGVEASVDGVLG 115

Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDL 185
           G+G+VN+ DI GSE FL+ LL +R  N   NQHLVALDCGSGIGRITKNLLIRYFNEVDL
Sbjct: 116 GYGHVNDADIIGSEVFLKTLLQERLVNVGPNQHLVALDCGSGIGRITKNLLIRYFNEVDL 175

Query: 186 LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD 245
           LEPV+ FLDAARE+LA         HKATNFFCVPLQ+FTP  GRYDVIWVQWCIGHLTD
Sbjct: 176 LEPVAQFLDAARENLAS---AGSKTHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTD 232

Query: 246 DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK 305
           +DFVSFF  AK  LKPGGFFV+KEN+A+ GFVLDKED SITRSD YFK+LF +CGLH+Y+
Sbjct: 233 NDFVSFFNCAKGCLKPGGFFVVKENLAKKGFVLDKEDHSITRSDPYFKQLFRQCGLHLYR 292

Query: 306 SKDQKGLPEELFAVKMYALTAEMPRRVSKSRSKVQANRPGIIR 348
           +KDQKGLP+ELFAVKMYALT + P ++ ++RSK  +NRP II+
Sbjct: 293 TKDQKGLPQELFAVKMYALTVDTPPKIHRTRSKTTSNRPQIIK 335

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358849|ref|NP_199258.3| methyltransferase [Arabidopsis thaliana] gi|332007727|gb|AED95110.1| methyltransferase [Arabidopsis thaliana]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/284 (71%), Positives = 242/284 (85%), Gaps = 6/284 (2%)

Query: 66  SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
           S++M++ G+DS+GKEF + +EMWRE+IGE  E   KKTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 56  SNSMDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLG 113

Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVD 184
           G+G+VN+ DI GSE FL+ LL +R   N   NQHLVALDCGSGIGRITKNLLIRYFNEVD
Sbjct: 114 GYGHVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVD 173

Query: 185 LLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT 244
           LLEPV+ FLDAARE+LA       + HKATNFFCVPLQ+FTP  GRYDVIWVQWCIGHLT
Sbjct: 174 LLEPVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLT 230

Query: 245 DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY 304
           D+DFVSFF RAK  LKPGGFFV+KEN+A++GFVLDKED SITRSD YFK+LF +CGLH+Y
Sbjct: 231 DNDFVSFFNRAKGYLKPGGFFVVKENLAKNGFVLDKEDHSITRSDPYFKQLFRQCGLHLY 290

Query: 305 KSKDQKGLPEELFAVKMYALTAEMPRRVSKSRSKVQANRPGIIR 348
           ++KDQKGLP+ELFAVKMYALT + P ++ ++RSK ++NRP II+
Sbjct: 291 RTKDQKGLPQELFAVKMYALTVDTPPKIHRTRSKTRSNRPQIIK 334

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433531|ref|XP_004134551.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus] gi|449506765|ref|XP_004162842.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/280 (71%), Positives = 242/280 (86%), Gaps = 5/280 (1%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
           ME SG D+DG EFKNAEEMWRE +G       K+T+WYREG+ YW+GVEASVDGVLGG+G
Sbjct: 1   MEGSGADTDGHEFKNAEEMWREHVG----NPTKRTEWYREGVGYWQGVEASVDGVLGGYG 56

Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
           +VN+ DI GSE FL+ +L +RF  A  ++ LVALDCGSGIGR+TKNLLI+YFNEVDLLEP
Sbjct: 57  HVNDADILGSEVFLKSILVERFSFAGKDRPLVALDCGSGIGRVTKNLLIKYFNEVDLLEP 116

Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
           VSHFL+AAR +LAPEN+   D+HKATNFFC+PLQ+FTP+ GRYDVIWVQWCIGHLTD+DF
Sbjct: 117 VSHFLEAARGNLAPENNGPSDLHKATNFFCMPLQEFTPDAGRYDVIWVQWCIGHLTDEDF 176

Query: 249 VSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD 308
           +SFFKRAK+GLK GG F+LKENIARSGFVLDKEDRSITRSD Y+K+LF++CGL+I+KS+D
Sbjct: 177 ISFFKRAKLGLKAGGIFILKENIARSGFVLDKEDRSITRSDSYYKDLFNQCGLYIFKSRD 236

Query: 309 QKGLPEELFAVKMYALTAEMPRRVSKSRSKVQANRPGIIR 348
           QKG P+ELF VKMYALT E P+R S+ + + Q+NRPG+I+
Sbjct: 237 QKGFPQELFPVKMYALTTEAPKRSSRIKRE-QSNRPGVIK 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348179|ref|XP_003638126.1| Methyltransferase-like protein 11A [Medicago truncatula] gi|355504061|gb|AES85264.1| Methyltransferase-like protein 11A [Medicago truncatula]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/279 (70%), Positives = 234/279 (83%), Gaps = 4/279 (1%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
           M+  G DS+G+E+K A+EMW+EQ G+      KKT WYR+G+SYWEGV A+VDGVLGG+ 
Sbjct: 1   MDAGGSDSNGREYKTADEMWKEQTGD----PNKKTLWYRQGVSYWEGVNATVDGVLGGYA 56

Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
           +VNE DI  S+ FL+++LS+RF      Q LVALDCGSGIGR+TKNLLIR+FNEVDLLEP
Sbjct: 57  DVNEPDITCSDDFLKIILSERFNADAKTQPLVALDCGSGIGRVTKNLLIRHFNEVDLLEP 116

Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
           VSHFL+AARE+L    +   DMHKA NF+CVPLQDFTP+ GRYDVIW+QWCIGHLTDDDF
Sbjct: 117 VSHFLEAARETLTSGEYTNSDMHKAVNFYCVPLQDFTPDVGRYDVIWIQWCIGHLTDDDF 176

Query: 249 VSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD 308
           ++FFKRAKVGLKPGG FVLKENIARSGFVLD EDRS+TRSD YF+ELFSRCGLH+YKSKD
Sbjct: 177 ITFFKRAKVGLKPGGLFVLKENIARSGFVLDNEDRSVTRSDPYFRELFSRCGLHVYKSKD 236

Query: 309 QKGLPEELFAVKMYALTAEMPRRVSKSRSKVQANRPGII 347
           QKG P++LFAVKMYALT E P++  ++RSK Q+NRP  I
Sbjct: 237 QKGFPQDLFAVKMYALTTEAPKKTHRTRSKTQSNRPRTI 275

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75321280|sp|Q5PP70.1|NTM1_ARATH RecName: Full=Alpha N-terminal protein methyltransferase 1; AltName: Full=X-Pro-Lys N-terminal protein methyltransferase 1; Short=NTM1 gi|56121880|gb|AAV74221.1| At5g44450 [Arabidopsis thaliana] gi|57222192|gb|AAW39003.1| At5g44450 [Arabidopsis thaliana]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/281 (71%), Positives = 239/281 (85%), Gaps = 6/281 (2%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
           M++ G+DS+GKEF + +EMWRE+IGE  E   KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1   MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58

Query: 129 NVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
           +VN+ DI GSE FL+ LL +R   N   NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59  HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118

Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
           PV+ FLDAARE+LA       + HKATNFFCVPLQ+FTP  GRYDVIWVQWCIGHLTD+D
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTDND 175

Query: 248 FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK 307
           FVSFF RAK  LKPGGFFV+KEN+A++GFVLDKED SITRSD YFK+LF +CGLH+Y++K
Sbjct: 176 FVSFFNRAKGYLKPGGFFVVKENLAKNGFVLDKEDHSITRSDPYFKQLFRQCGLHLYRTK 235

Query: 308 DQKGLPEELFAVKMYALTAEMPRRVSKSRSKVQANRPGIIR 348
           DQKGLP+ELFAVKMYALT + P ++ ++RSK ++NRP II+
Sbjct: 236 DQKGLPQELFAVKMYALTVDTPPKIHRTRSKTRSNRPQIIK 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242032801|ref|XP_002463795.1| hypothetical protein SORBIDRAFT_01g006290 [Sorghum bicolor] gi|241917649|gb|EER90793.1| hypothetical protein SORBIDRAFT_01g006290 [Sorghum bicolor]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/305 (60%), Positives = 220/305 (72%), Gaps = 27/305 (8%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIG-------------------------EDGEQQEKKT 103
           M+  G DS G+ F +A EMW E++G                         E+G    K+ 
Sbjct: 1   MDSRGFDSAGRVFSSATEMWAEELGSSATASTTAEAASPATATEGSGGASEEGAGDGKRK 60

Query: 104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALD 163
           +WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL+DRF  A+  +HLVALD
Sbjct: 61  EWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLADRFGTAK--RHLVALD 118

Query: 164 CGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223
           CGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AARESL        D HKA NF+CVPLQD
Sbjct: 119 CGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAARESLTGYMDQGEDSHKAANFYCVPLQD 178

Query: 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDR 283
           FTPE G+YDVIW+QWCIG L DDDF+SFF RAKVGLKP GFFVLKENIAR+GFVLDKED 
Sbjct: 179 FTPEEGKYDVIWIQWCIGQLPDDDFISFFNRAKVGLKPDGFFVLKENIARNGFVLDKEDN 238

Query: 284 SITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALTAEMPRRVSKSRSKVQANR 343
           S+TRSD YF+ELF RCGL+I   KDQK LPEELFAVKMYAL    P+     + +   N 
Sbjct: 239 SVTRSDPYFRELFKRCGLYILSVKDQKELPEELFAVKMYALVTSQPKIQKSGKRRRPKNS 298

Query: 344 PGIIR 348
           P +IR
Sbjct: 299 PRMIR 303

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
DICTYBASE|DDB_G0269658	270	DDB_G0269658 "Methyltransferas	0.695	0.896	0.411	7.4e-50
UNIPROTKB|Q4KL94	224	ntmt1-a "N-terminal Xaa-Pro-Ly	0.632	0.982	0.407	3.8e-46
ZFIN|ZDB-GENE-040426-2055	223	ntmt1 "N-terminal Xaa-Pro-Lys	0.620	0.968	0.435	4.8e-46
UNIPROTKB|B1H2P7	224	ntmt1 "N-terminal Xaa-Pro-Lys	0.632	0.982	0.403	6.2e-46
UNIPROTKB|Q4KLE6	223	ntmt1-b "N-terminal Xaa-Pro-Ly	0.629	0.982	0.394	1.6e-45
MGI|MGI:1913867	223	Ntmt1 "N-terminal Xaa-Pro-Lys	0.620	0.968	0.404	3.1e-44
UNIPROTKB|F1MKD1	223	METTL11A "Uncharacterized prot	0.620	0.968	0.417	5e-44
UNIPROTKB|Q9BV86	223	NTMT1 "N-terminal Xaa-Pro-Lys	0.620	0.968	0.408	5e-44
UNIPROTKB|F1RQG3	223	NTMT1 "Uncharacterized protein	0.620	0.968	0.413	1.3e-43
UNIPROTKB|D2H163	223	NTMT1 "N-terminal Xaa-Pro-Lys	0.620	0.968	0.413	2.8e-43

DICTYBASE|DDB_G0269658 DDB_G0269658 "Methyltransferase-like protein 11A" [Dictyostelium discoideum (taxid:44689)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 105/255 (41%), Positives = 156/255 (61%)

Query:    72 SGLDSDGKEFKNAEEMWREQI-GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNV 130
             SGLD +G  + N E++W++++ G+D + ++K   WY+    YW+GVEA+VDG+LGG   V
Sbjct:    24 SGLDGEGNTYINIEDLWKKELEGKDNKMEDK---WYKSADEYWKGVEATVDGMLGGLAQV 80

Query:   131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPV 189
             + +D+  S+ F+Q  +         N +L ALDCG+GIGR+ K  L+   F  VDL+E  
Sbjct:    81 SPIDVVASKVFIQDFIKGTDSRPPINLNL-ALDCGAGIGRVAKEFLLPIGFKNVDLVEQN 139

Query:   190 SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFV 249
               FLD A+     +N    D ++  N++ V LQDFT E  +YD IW+QW IGHL D DF+
Sbjct:   140 KLFLDKAKS----DNFK--DDNRVENYYAVGLQDFTFEK-KYDCIWIQWVIGHLHDLDFI 192

Query:   250 SFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ 309
              F K+    L P G   +K+N A+  F++DKED S++R++ + K LF + G  + KS  Q
Sbjct:   193 EFLKKCMDSLTPNGIICIKDNCAKKRFIMDKEDNSVSRTEDHLKYLFDQAGCKLLKSMVQ 252

Query:   310 KGLPEELFAVKMYAL 324
                P+ELF V M+AL
Sbjct:   253 PNFPKELFPVLMFAL 267

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|Q4KL94 ntmt1-a "N-terminal Xaa-Pro-Lys N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 93/228 (40%), Positives = 140/228 (61%)

Query:    97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
             E  E +TQ+Y +  +YW+ V  +VDG+LGG+G+++ VD+ GS+ FLQ  L     N   N
Sbjct:     4 ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63

Query:   157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
                 ALDCG+GIGRITK LL+  F  VD+++    FL+ A+  L  E        +  N+
Sbjct:    64 A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115

Query:   217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF 276
             FC  LQ+F+PE  RYDVIW+QW IGHLTD+  V+F +R ++GL+P G  V+K+N+ +   
Sbjct:   116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVNFLQRCRLGLRPNGIIVIKDNVTQDAS 175

Query:   277 VLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
             ++D  D SI R     ++L  + GL I   + Q+  P+E++ V  +A+
Sbjct:   176 IMDDVDSSICREIDLVRKLIKQAGLSILAVERQENFPDEIYHVFSFAM 223

GO:0005634 "nucleus" evidence=ISS

GO:0007051 "spindle organization" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0008276 "protein methyltransferase activity" evidence=ISS

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=ISS

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=ISS

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=ISS

ZFIN|ZDB-GENE-040426-2055 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Danio rerio (taxid:7955)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 98/225 (43%), Positives = 132/225 (58%)

Query:   100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
             E +T +Y E   YW+ V  +VDG+LGG+G+++ +DI GS+ FLQ  L +           
Sbjct:     7 EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63

Query:   160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
              ALDCG+GIGRITK LL+  F  VDL++    FLD AR  L  E+       +  N+FC 
Sbjct:    64 CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117

Query:   220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD 279
              LQDF P+  RYDVIW+QW IGHLTDD  V F +R + GL+P G  V+K+N+A  G + D
Sbjct:   118 GLQDFQPQPERYDVIWIQWVIGHLTDDHLVEFLRRCRSGLRPEGLIVVKDNVAYEGVIPD 177

Query:   280 KEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
               D S+ R       L +R GL I   + Q+  PEE++ V   AL
Sbjct:   178 DVDSSVCRDLNVLHRLVARAGLSIIYEEQQQNFPEEIYQVHALAL 222

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=ISS

GO:0007051 "spindle organization" evidence=ISS

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0008276 "protein methyltransferase activity" evidence=ISS

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|B1H2P7 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 92/228 (40%), Positives = 138/228 (60%)

Query:    97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
             E  E + Q+Y +   YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ  L     N   N
Sbjct:     4 ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63

Query:   157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
              +  ALDCG+GIGRITK LL+  F +VD+++    FL  A+  L  E        +  N+
Sbjct:    64 MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115

Query:   217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF 276
             FC  LQ+F+PE  RYDVIW+QW IGHLTD+  V F KR  +GL+P G  V+K+N+ +   
Sbjct:   116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVDFLKRCSLGLRPNGIIVIKDNVTQDVS 175

Query:   277 VLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
             ++D  D SI R     ++L  + GL +   + Q+  P+E++ V  +A+
Sbjct:   176 IMDDVDSSICRDIDLVRKLIKQAGLSLLAVERQENFPDEIYHVFSFAM 223

GO:0005634 "nucleus" evidence=ISS

GO:0007051 "spindle organization" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0008276 "protein methyltransferase activity" evidence=ISS

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=ISS

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=ISS

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=ISS

UNIPROTKB|Q4KLE6 ntmt1-b "N-terminal Xaa-Pro-Lys N-methyltransferase 1-B" [Xenopus laevis (taxid:8355)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 90/228 (39%), Positives = 141/228 (61%)

Query:    97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
             E  E +TQ+Y +  +YW+ V A+VDG+LGG+G+++  D+  S+ FLQ  L +    ++  
Sbjct:     4 ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60

Query:   157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
              +  ALDCG+GIGRITK LL+  F  VD+++    FL+ A+  L  E        +   +
Sbjct:    61 GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114

Query:   217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF 276
             FC  LQ+F+PE  RYDVIW+QW IGHLTD+  VSF +R K+GL+P G  ++K+N+ + G 
Sbjct:   115 FCCGLQEFSPEPSRYDVIWIQWVIGHLTDEHLVSFLQRCKLGLRPNGIILIKDNVTQDGS 174

Query:   277 VLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
             ++D  D SI R     ++L  + GL +   + Q+  P+E++ V  +A+
Sbjct:   175 IMDDADSSICRDIDLVRKLIKQAGLSVLAIERQENFPDEIYQVFSFAM 222

GO:0005634 "nucleus" evidence=ISS

GO:0007051 "spindle organization" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0008276 "protein methyltransferase activity" evidence=ISS

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=ISS

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=ISS

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=ISS

MGI|MGI:1913867 Ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 91/225 (40%), Positives = 133/225 (59%)

Query:   100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
             E + Q+Y +  +YW+ +  +VDG+LGG+G+++ +D+  S  FLQ  L +  PN       
Sbjct:     7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREG-PNKTGTS-- 63

Query:   160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
              ALDCG+GIGRITK LL+  F  VD+++    FL  A+  L  E        +  N+FC 
Sbjct:    64 CALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGK------RVRNYFCC 117

Query:   220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD 279
              LQDF+PE G YDVIW+QW IGHLTD     F +R K GL+P G  V+K+N+A+ G +LD
Sbjct:   118 GLQDFSPEPGSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILD 177

Query:   280 KEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
               D S+ R     + +    GL +   + Q+ LP+E++ V  +AL
Sbjct:   178 DVDSSVCRDLEVVRRIIRTAGLSLLAEERQENLPDEIYHVYSFAL 222

GO:0005634 "nucleus" evidence=ISO

GO:0007051 "spindle organization" evidence=ISO

GO:0007059 "chromosome segregation" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=ISO;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0018012 "N-terminal peptidyl-alanine trimethylation" evidence=IDA

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=ISO;IDA

GO:0032259 "methylation" evidence=IEA

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=ISO

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=ISO

UNIPROTKB|F1MKD1 METTL11A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 94/225 (41%), Positives = 133/225 (59%)

Query:   100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
             E + Q+Y +  +YW+ V A+VDG+LGG+G+++ +DI  S  FLQ  L +  PN     + 
Sbjct:     7 EDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTSY- 64

Query:   160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
              ALDCG+GIGRITK LL+  F  VD+++    FL  A+  L  E        +  NFFC 
Sbjct:    65 -ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNFFCC 117

Query:   220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD 279
              LQDF+PE   YDVIW+QW IGHLTD     F +R K GL+P G  V+K+N+A+ G +LD
Sbjct:   118 GLQDFSPEPQSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILD 177

Query:   280 KEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
               D S+ R+      +    GL +   + Q+ LP+E++ V   AL
Sbjct:   178 DVDSSVCRALDVVHRIVRSAGLSLLAQERQENLPDEIYHVYSLAL 222

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=IEA

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=IEA

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=IEA

GO:0018012 "N-terminal peptidyl-alanine trimethylation" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007051 "spindle organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9BV86 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Homo sapiens (taxid:9606)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 92/225 (40%), Positives = 132/225 (58%)

Query:   100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
             E + Q+Y +  +YW+ +  +VDG+LGG+G+++ +DI  S  FLQ  L +  PN       
Sbjct:     7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTS-- 63

Query:   160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
              ALDCG+GIGRITK LL+  F EVD+++    FL  A+  L  E        +  N+FC 
Sbjct:    64 CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCC 117

Query:   220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD 279
              LQDFTPE   YDVIW+QW IGHLTD     F +R K  L+P G  V+K+N+A+ G +LD
Sbjct:   118 GLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILD 177

Query:   280 KEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
               D S+ R     + +    GL +   + Q+ LP+E++ V  +AL
Sbjct:   178 DVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFAL 222

GO:0018012 "N-terminal peptidyl-alanine trimethylation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0007051 "spindle organization" evidence=IMP

GO:0007059 "chromosome segregation" evidence=IMP

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=IDA

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=IDA

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1RQG3 NTMT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 93/225 (41%), Positives = 131/225 (58%)

Query:   100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
             E + Q+Y +  +YW+ V  +VDG+LGG+G+++ +DI  S  FLQ  L +  PN       
Sbjct:     7 EDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTS-- 63

Query:   160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
              ALDCG+GIGRITK LL+  F  VD+++    FL  A+  L  E        +  N+FC 
Sbjct:    64 CALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGK------RVRNYFCC 117

Query:   220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD 279
              LQDF+PE   YDVIW+QW IGHLTD     F +R K GL+P G  V+K+N+A+ G +LD
Sbjct:   118 GLQDFSPEPHSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILD 177

Query:   280 KEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
               D S+ R       +  R GL +   + Q+ LP+E++ V   AL
Sbjct:   178 DVDSSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVYSLAL 222

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=IEA

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=IEA

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=IEA

GO:0018012 "N-terminal peptidyl-alanine trimethylation" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007051 "spindle organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|D2H163 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Ailuropoda melanoleuca (taxid:9646)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 93/225 (41%), Positives = 130/225 (57%)

Query:   100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
             E + Q+Y +  +YW+ V  +VDG+LGG+G+++ +DI  S  FLQ  L +  PN       
Sbjct:     7 EDEKQFYLKAKTYWKEVPPTVDGMLGGYGHISSIDISSSRKFLQRFLREG-PNKTGTS-- 63

Query:   160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
              ALDCG+GIGRITK LL+  F  VD+++    FL  AR  L  E        +  N+FC 
Sbjct:    64 CALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLIKARTYLGEEGK------RVRNYFCC 117

Query:   220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD 279
              LQDF+PE   YDVIW+QW IGHLTD     F +R K GL+P G  V+K+N+A+ G +LD
Sbjct:   118 GLQDFSPEPNSYDVIWIQWVIGHLTDQHLAEFLRRCKQGLRPNGIIVIKDNMAQEGVILD 177

Query:   280 KEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
               D S+ R       +    GL +   + Q+ LP+E++ V   AL
Sbjct:   178 DVDSSVCRDLDVVHRIVRSAGLSLLAEERQENLPDEIYHVYSLAL 222

GO:0005634 "nucleus" evidence=ISS

GO:0007051 "spindle organization" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0008276 "protein methyltransferase activity" evidence=ISS

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=ISS

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=ISS

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q10CT5	NTM1_ORYSJ	2, ., 1, ., 1, ., 2, 4, 4	0.5779	0.7988	0.9055	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!
4th Layer	2.1.1.8	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
pfam05891	217	pfam05891, Methyltransf_PK, AdoMet dependent proli	1e-126
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	9e-08
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	3e-07
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	6e-06
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	7e-06
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	2e-05
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-04
PLN02336	475	PLN02336, PLN02336, phosphoethanolamine N-methyltr	5e-04

>gnl|CDD|218798 pfam05891, Methyltransf_PK, AdoMet dependent proline di-methyltransferase

 Score =  361 bits (928), Expect = e-126
 Identities = 132/225 (58%), Positives = 170/225 (75%), Gaps = 8/225 (3%)

Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
            + Q+Y + I+YWEGV A+VDG+LGG+G+V+++D+ GS  FL+ LL +R P     +HLV
Sbjct: 1   DEEQFYSKAIAYWEGVSATVDGMLGGYGHVSDIDVNGSRNFLRRLLRERLPGK--RRHLV 58

Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
           ALDCG+GIGR+TKNLL+  F++VDL+EPV  FL  A+E LA          K  NFFCV 
Sbjct: 59  ALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEGKK------KVGNFFCVG 112

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK 280
           LQDFTPE GRYD+IW+QWCIGHLTD+D V+F KR K GLKP GF V+KEN+A++GFV DK
Sbjct: 113 LQDFTPEEGRYDLIWIQWCIGHLTDEDLVAFLKRCKGGLKPNGFIVVKENVAQNGFVFDK 172

Query: 281 EDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALT 325
           ED S+TRS+ YFK+LF + GL +   + QKGLP+EL+ VKMYAL 
Sbjct: 173 EDSSVTRSEAYFKKLFKKAGLKLVAEERQKGLPQELYPVKMYALK 217

This protein is expressed in the tail neuron PVT and in uterine cells in C. elegans [worm-base]. In Saccharomyces cerevisiae this is AdoMet dependent proline di-methyltransferase. This enzyme catalyzes the di-methylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues. The methyltransferases described here specifically recognise the N-terminal X-Pro-Lys sequence motif, and they may account for nearly all previously described eukaryotic protein N-terminal methylation reactions. A number of other yeast and human proteins also share the recognition motif and may be similarly modified. As with other methyltransferases, this family carries the characteristic GxGxG motif. Length = 217

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 36/170 (21%), Positives = 54/170 (31%), Gaps = 38/170 (22%)

Query: 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205
           L               LD G G G +T+  L++ F + + +       D +   LA    
Sbjct: 23  LLALLKEKGIFIPASVLDIGCGTGYLTR-ALLKRFPQAEFI-----ANDISAGMLA---Q 73

Query: 206 MAPDMHKATNFFCVPLQDFTPETGRYDVIW----VQWCIGHLTDDDFVSFFKRAKVGLKP 261
               + +   F C   +    E   +D+I     +QWC      DD           LKP
Sbjct: 74  AKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC------DDLSQALSELARVLKP 127

Query: 262 GGFFVLKENIARSGFVLD--KEDRSITRSDFYFKELFSRCGLHIYKSKDQ 309
           GG          S F      E           ++ F + GL  Y S D+
Sbjct: 128 GGLLAF------STFGPGTLHE----------LRQSFGQHGLR-YLSLDE 160

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 14/106 (13%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
           LD G G G + + L  R    V  ++     L  AR+    +  +            +P 
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAED-------LPF 53

Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
            D       +DV+     + HL   D     +     LKPGG  V+
Sbjct: 54  PD-----ESFDVVVSSLVLHHL--PDPERALREIARVLKPGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
           LD G G G +   L       V  ++     L+ AR++ A                    
Sbjct: 3   LDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDA 56

Query: 222 QDFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268
           ++  PE    +DVI     + HL  +D   F + A+  LKPGG  VL 
Sbjct: 57  EELPPEADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
           LD G G G + + LL      E   ++     L+AA E LA    +     +        
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRL-----DV 55

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265
           L     + G +DV+     + HL   D  +  +  +  LKPGG  
Sbjct: 56  LDAIDLDPGSFDVVVASNVLHHL--ADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
            LD G G GR+    L R     V  ++     L+ A+E L  +            F   
Sbjct: 1   ILDLGCGTGRVL-RALARAGPSSVTGVDISKEALELAKERLRDKGP-------KVRFVVA 52

Query: 220 PLQDFTPETGRYDVIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGG 263
             +D   E G +D++      + +L+     +  + A   L+PGG
Sbjct: 53  DARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 12/107 (11%)

Query: 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
           LD G G G +   L   +    V  ++     L+ ARE+        P +     F    
Sbjct: 6   LDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLAL--GPRIT----FVQGD 59

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
             D       +D +++    G L +             LKPGG  VL
Sbjct: 60  APDALDLLEGFDAVFIGGGGGDLLE-----LLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 12/141 (8%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--V 219
           L+ G+GIGR T  L  +   +V  L+ +        ES+  +N      +K   F C  V
Sbjct: 42  LELGAGIGRFTGEL-AKKAGQVIALDFI--------ESVIKKNESINGHYKNVKFMCADV 92

Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN-IARSGFVL 278
              D     G  D+I+  W + +L+D +  +  +R    LK GG+   +E+   +SG   
Sbjct: 93  TSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK 152

Query: 279 DKEDRSITRSDFYFKELFSRC 299
            K + +  R   ++ ++F  C
Sbjct: 153 RKNNPTHYREPRFYTKVFKEC 173

Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.88
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.88
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.87
PLN02244	340	tocopherol O-methyltransferase	99.85
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.84
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.83
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.83
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.81
PRK11207	197	tellurite resistance protein TehB; Provisional	99.8
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.79
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.79
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.79
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.78
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.78
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.78
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.78
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.77
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.77
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.77
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.77
PLN02490	340	MPBQ/MSBQ methyltransferase	99.76
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.76
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.75
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.75
PLN02336	475	phosphoethanolamine N-methyltransferase	99.75
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.73
PRK12335	287	tellurite resistance protein TehB; Provisional	99.73
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.73
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.73
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.72
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.71
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.7
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.7
PLN02336	475	phosphoethanolamine N-methyltransferase	99.69
PRK08317	241	hypothetical protein; Provisional	99.69
KOG2361	264	consensus Predicted methyltransferase [General fun	99.69
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.68
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.68
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.68
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.67
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.67
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.67
PRK06202	232	hypothetical protein; Provisional	99.67
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.67
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.67
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.66
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.65
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.64
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.64
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.63
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.63
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.63
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.62
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.62
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.62
PRK05785	226	hypothetical protein; Provisional	99.62
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.61
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.61
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.59
KOG1271	227	consensus Methyltransferases [General function pre	99.59
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.59
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.59
KOG4300	252	consensus Predicted methyltransferase [General fun	99.57
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.57
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.56
PRK06922	677	hypothetical protein; Provisional	99.56
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.56
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.55
PRK04266	226	fibrillarin; Provisional	99.55
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.54
TIGR03438	301	probable methyltransferase. This model represents	99.54
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.53
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.52
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.52
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.5
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.5
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.49
PTZ00146	293	fibrillarin; Provisional	99.48
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.48
PRK14967	223	putative methyltransferase; Provisional	99.46
PLN03075	296	nicotianamine synthase; Provisional	99.46
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.45
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.45
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.45
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.45
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.44
COG4123	248	Predicted O-methyltransferase [General function pr	99.44
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.44
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.43
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.43
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.43
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.43
PRK14968	188	putative methyltransferase; Provisional	99.42
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.42
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.42
PHA03411	279	putative methyltransferase; Provisional	99.41
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.4
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.39
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.39
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.38
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.38
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.36
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.36
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.35
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.34
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.33
KOG3010	261	consensus Methyltransferase [General function pred	99.33
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.33
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.33
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.33
PRK07402	196	precorrin-6B methylase; Provisional	99.32
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.28
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.27
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.26
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.26
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.23
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.22
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	99.21
TIGR00438	188	rrmJ cell division protein FtsJ.	99.21
PRK00811	283	spermidine synthase; Provisional	99.21
COG2890	280	HemK Methylase of polypeptide chain release factor	99.2
PRK04457	262	spermidine synthase; Provisional	99.19
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.18
KOG2899	288	consensus Predicted methyltransferase [General fun	99.18
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.17
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.17
PHA03412	241	putative methyltransferase; Provisional	99.16
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.13
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.13
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.13
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.13
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.1
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.09
KOG2940	325	consensus Predicted methyltransferase [General fun	99.09
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.09
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.08
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.08
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.07
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.06
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.06
PLN02672	1082	methionine S-methyltransferase	99.06
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.03
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.03
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.03
PRK01581	374	speE spermidine synthase; Validated	99.03
PLN02366	308	spermidine synthase	99.02
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.01
PRK03612	521	spermidine synthase; Provisional	99.0
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.99
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.98
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.96
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.96
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.94
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.93
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.93
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.93
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.92
PLN02476	278	O-methyltransferase	98.92
COG4122	219	Predicted O-methyltransferase [General function pr	98.9
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.89
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.87
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.85
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.84
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.83
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.81
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.81
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.81
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.8
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.8
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.8
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.78
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.75
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.75
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.72
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.72
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.72
KOG2904	328	consensus Predicted methyltransferase [General fun	98.71
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.7
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.7
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.68
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.68
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.68
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.65
PLN02823	336	spermine synthase	98.6
COG2521	287	Predicted archaeal methyltransferase [General func	98.57
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.56
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.55
PRK04148	134	hypothetical protein; Provisional	98.53
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.52
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.51
COG4798	238	Predicted methyltransferase [General function pred	98.49
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.47
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.46
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.45
PRK00536	262	speE spermidine synthase; Provisional	98.45
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.44
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.43
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.43
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.39
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.39
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.37
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.37
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.36
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.31
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.28
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.28
KOG1331	293	consensus Predicted methyltransferase [General fun	98.28
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.28
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.27
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.24
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	98.24
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.22
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.17
COG2520	341	Predicted methyltransferase [General function pred	98.17
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.16
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	98.1
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.1
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.07
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.05
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.05
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.02
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.97
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.93
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.92
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.9
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.87
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.87
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.86
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.86
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.82
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.82
COG4076	252	Predicted RNA methylase [General function predicti	97.8
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.79
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.77
PF13679	141	Methyltransf_32: Methyltransferase domain	97.71
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.71
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.7
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.69
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.67
KOG2730	263	consensus Methylase [General function prediction o	97.66
COG3897	218	Predicted methyltransferase [General function pred	97.65
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.63
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.58
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.56
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.56
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.55
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.46
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.45
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.4
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.37
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.25
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.09
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.04
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.0
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	96.88
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	96.83
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.75
PHA01634	156	hypothetical protein	96.71
KOG3115	249	consensus Methyltransferase-like protein [General	96.7
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.69
COG4301	321	Uncharacterized conserved protein [Function unknow	96.66
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.44
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	96.36
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.18
PRK10742	250	putative methyltransferase; Provisional	96.11
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	96.08
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.07
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.92
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	95.91
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	95.83
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	95.66
PLN02668	386	indole-3-acetate carboxyl methyltransferase	95.64
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.59
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.55
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	95.23
KOG4058	199	consensus Uncharacterized conserved protein [Funct	95.16
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	95.16
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.01
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.87
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	94.85
KOG2920	282	consensus Predicted methyltransferase [General fun	94.85
COG1565	370	Uncharacterized conserved protein [Function unknow	94.84
COG3129	292	Predicted SAM-dependent methyltransferase [General	94.82
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	94.82
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	94.77
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	94.7
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	94.7
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	94.66
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	94.53
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	94.51
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	94.39
PF03269	177	DUF268: Caenorhabditis protein of unknown function	94.12
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.06
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	93.93
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.88
COG0286	489	HsdM Type I restriction-modification system methyl	93.66
PRK10458	467	DNA cytosine methylase; Provisional	93.56
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	93.36
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	93.33
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.21
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	93.16
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.11
PRK13699	227	putative methylase; Provisional	93.09
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	92.04
KOG1227	351	consensus Putative methyltransferase [General func	91.69
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	91.29
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	90.96
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	90.85
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	90.75
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	90.74
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	90.54
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	90.3
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	89.86
PRK11524	284	putative methyltransferase; Provisional	89.47
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	89.38
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	89.25
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	88.77
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	88.38
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	88.21
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	87.79
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	87.63
PTZ00357	1072	methyltransferase; Provisional	87.55
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	87.53
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	87.24
COG1255	129	Uncharacterized protein conserved in archaea [Func	86.91
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	84.86
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	84.69
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	84.63
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	84.05
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	83.82
PRK11524	284	putative methyltransferase; Provisional	83.72
KOG2352	482	consensus Predicted spermine/spermidine synthase [	83.11
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	82.82
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	81.8
PRK13699	227	putative methylase; Provisional	81.5
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	81.33
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	81.16
KOG2078	495	consensus tRNA modification enzyme [RNA processing	80.91
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	80.38

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=100.00  E-value=1.4e-39  Score=282.97  Aligned_cols=216  Identities=54%  Similarity=1.031  Sum_probs=177.6

Q ss_pred             hhhHHHhhhhccccccccccccccCcccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC
Q 018970          102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN  181 (348)
Q Consensus       102 ~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~  181 (348)
                      ...||..+.+||++++++++||++||++++..|+..+..||..+......  ......++||+|||.|+++..++.+.++
T Consensus         2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~   79 (218)
T PF05891_consen    2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD   79 (218)
T ss_dssp             HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred             cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence            46899999999999999999999999999999999999999987764321  1234578999999999999999988899


Q ss_pred             cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCC
Q 018970          182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP  261 (348)
Q Consensus       182 ~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkp  261 (348)
                      .|+.+|+++.+++.|++.+...      .....++++..+++|.++.++||+||++|++.|++|+|+..||++|...|+|
T Consensus        80 ~VDlVEp~~~Fl~~a~~~l~~~------~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~  153 (218)
T PF05891_consen   80 EVDLVEPVEKFLEQAKEYLGKD------NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP  153 (218)
T ss_dssp             EEEEEES-HHHHHHHHHHTCCG------GCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE
T ss_pred             EeEEeccCHHHHHHHHHHhccc------CCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC
Confidence            9999999999999999887651      1356899999999999877899999999999999999999999999999999


Q ss_pred             CcEEEEEecccCCCc-eecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCccceEEEEEEEe
Q 018970          262 GGFFVLKENIARSGF-VLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALT  325 (348)
Q Consensus       262 gG~lii~~~~~~~~~-~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~~l~~v~~~~l~  325 (348)
                      +|+|++.||+...++ .+|..+++++|+.+.+.++|++||++++..+.|.+||+++|||+||||+
T Consensus       154 ~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP~~L~pV~myaLr  218 (218)
T PF05891_consen  154 NGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFPKELYPVRMYALR  218 (218)
T ss_dssp             EEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--TTS-EEEEEEEE
T ss_pred             CcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCCccceEEEEEEeC
Confidence            999999999998887 8999999999999999999999999999999999999999999999996

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.88  E-value=2.8e-22  Score=179.36  Aligned_cols=159  Identities=18%  Similarity=0.213  Sum_probs=125.4

Q ss_pred             hhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce
Q 018970          136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKAT  214 (348)
Q Consensus       136 ~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i  214 (348)
                      ...+..+.+.+..++.   ..++.+|||||||||.++..+++.... +|+++|+|+.||+.|+++..+.+.      .++
T Consensus        33 ~g~~~~Wr~~~i~~~~---~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~------~~i  103 (238)
T COG2226          33 FGLHRLWRRALISLLG---IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV------QNV  103 (238)
T ss_pred             CcchHHHHHHHHHhhC---CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc------cce
Confidence            3444555555555544   447899999999999999999877533 799999999999999999987543      339


Q ss_pred             eEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc---------e--------
Q 018970          215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF---------V--------  277 (348)
Q Consensus       215 ~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~---------~--------  277 (348)
                      +|..+|++++|+++++||+|.++..|++++  |+..+|++++|+|||||.+++.+.......         .        
T Consensus       104 ~fv~~dAe~LPf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~  181 (238)
T COG2226         104 EFVVGDAENLPFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLI  181 (238)
T ss_pred             EEEEechhhCCCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhh
Confidence            999999999999999999999999999999  889999999999999999999875432210         0        


Q ss_pred             ---ecCCCCce---------ecCHHHHHHHHHhcCCeEEE
Q 018970          278 ---LDKEDRSI---------TRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       278 ---~d~~~~~~---------~~s~~~l~~l~~~aGf~~v~  305 (348)
                         .......+         ..+.+++.++++++||+.+.
T Consensus       182 g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~  221 (238)
T COG2226         182 GKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR  221 (238)
T ss_pred             ceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence               00000000         14778899999999999887

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.88  E-value=2e-21  Score=182.59  Aligned_cols=197  Identities=15%  Similarity=0.171  Sum_probs=135.4

Q ss_pred             hhhhHHHhhhhccccccccccccccCcccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCC
Q 018970          101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF  180 (348)
Q Consensus       101 ~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~  180 (348)
                      ....+...+..||+...     .+..+..++..........+.+.+..........++.+|||||||+|.++..++..+.
T Consensus        80 e~~~f~~~a~~WW~~~g-----~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g~  154 (322)
T PLN02396         80 ELAKFSAIADTWWHSEG-----PFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMGA  154 (322)
T ss_pred             HHHHHHHHHHHhcCCCC-----CchHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcCC
Confidence            34455556668888532     1222223333333333334333332211111134567999999999999999886655


Q ss_pred             CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCC
Q 018970          181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK  260 (348)
Q Consensus       181 ~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lk  260 (348)
                       .|+|+|+|+.|++.|+++....+.     ..++++.+.|+++++..+++||+|++..+++|++  ++..+++++.++||
T Consensus       155 -~V~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~--d~~~~L~~l~r~Lk  226 (322)
T PLN02396        155 -TVTGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVA--NPAEFCKSLSALTI  226 (322)
T ss_pred             -EEEEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecCHHHhhhccCCCCEEEEhhHHHhcC--CHHHHHHHHHHHcC
Confidence             599999999999999987643211     2468999999988876668999999999999999  77899999999999


Q ss_pred             CCcEEEEEecccCCC----------ce---ecCCCCc--eecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          261 PGGFFVLKENIARSG----------FV---LDKEDRS--ITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       261 pgG~lii~~~~~~~~----------~~---~d~~~~~--~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      |||.+++.+......          +.   .....+.  ..++.+++.++++++||++++..-..
T Consensus       227 PGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~~  291 (322)
T PLN02396        227 PNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGFV  291 (322)
T ss_pred             CCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeeeE
Confidence            999999987443210          00   1111121  23689999999999999999865433

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.87  E-value=1.2e-22  Score=183.04  Aligned_cols=145  Identities=22%  Similarity=0.233  Sum_probs=85.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-C-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      ..++.+|||+|||||.++..++.... . .|+++|+|+.|++.|+++....+.      .++++.++|++++++++++||
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~~da~~lp~~d~sfD  118 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQGDAEDLPFPDNSFD  118 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-BTTB--S-TT-EE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEEcCHHHhcCCCCcee
Confidence            56778999999999999999887643 2 799999999999999998865432      379999999999999999999


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc--------------------------eecCCCCcee
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF--------------------------VLDKEDRSIT  286 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~--------------------------~~d~~~~~~~  286 (348)
                      +|++.+.+++++  |+..++++++|+|||||.++|.|.......                          .+.....++.
T Consensus       119 ~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~  196 (233)
T PF01209_consen  119 AVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIR  196 (233)
T ss_dssp             EEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH----------------------------
T ss_pred             EEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccc
Confidence            999999999999  788999999999999999999874322210                          0111111222


Q ss_pred             --cCHHHHHHHHHhcCCeEEEEe
Q 018970          287 --RSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       287 --~s~~~l~~l~~~aGf~~v~~~  307 (348)
                        .+.+++.++++++||+.++..
T Consensus       197 ~f~~~~~~~~~l~~~Gf~~v~~~  219 (233)
T PF01209_consen  197 RFPSPEELKELLEEAGFKNVEYR  219 (233)
T ss_dssp             -----------------------
T ss_pred             ccccccccccccccccccccccc
Confidence              367889999999999987654

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02244 tocopherol O-methyltransferase

Probab=99.85  E-value=3e-20  Score=177.08  Aligned_cols=148  Identities=21%  Similarity=0.208  Sum_probs=118.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||||||+|.++..++.+...+|+++|+|+.|++.++++....++     ..++.|.++|+.++++++++||+|+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~~~D~~~~~~~~~~FD~V~  191 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----SDKVSFQVADALNQPFEDGQFDLVW  191 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcCcccCCCCCCCccEEE
Confidence            56789999999999999999877544799999999999999988765443     3569999999999888888999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc----ee--------cC----CCCceecCHHHHHHHHHhc
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF----VL--------DK----EDRSITRSDFYFKELFSRC  299 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~----~~--------d~----~~~~~~~s~~~l~~l~~~a  299 (348)
                      +..+++|++  +...+++++.++|||||.|++.+.......    ..        +.    .......+.+++.++++++
T Consensus       192 s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~a  269 (340)
T PLN02244        192 SMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESL  269 (340)
T ss_pred             ECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHC
Confidence            999999999  778999999999999999999864321110    00        00    0000113788999999999


Q ss_pred             CCeEEEEeecC
Q 018970          300 GLHIYKSKDQK  310 (348)
Q Consensus       300 Gf~~v~~~~~~  310 (348)
                      ||..+...+..
T Consensus       270 Gf~~v~~~d~s  280 (340)
T PLN02244        270 GLQDIKTEDWS  280 (340)
T ss_pred             CCCeeEeeeCc
Confidence            99999877654

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.84  E-value=3.4e-20  Score=170.42  Aligned_cols=151  Identities=15%  Similarity=0.082  Sum_probs=116.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+|||+|.++..++... + ..|+++|+|+.|++.|+++.....   .....++.+.++|++++++++++||
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~---~~~~~~i~~~~~d~~~lp~~~~sfD  147 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA---KSCYKNIEWIEGDATDLPFDDCYFD  147 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh---hccCCCeEEEEcccccCCCCCCCEe
Confidence            4667899999999999999888663 3 279999999999999987753100   0012468999999999998888999


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce--------ec----------CCCC---------ce
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV--------LD----------KEDR---------SI  285 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~--------~d----------~~~~---------~~  285 (348)
                      +|+++.++||++  ++..+++++.++|||||.+++.+........        ..          ....         ..
T Consensus       148 ~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~  225 (261)
T PLN02233        148 AITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE  225 (261)
T ss_pred             EEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence            999999999998  7889999999999999999998755432110        00          0000         01


Q ss_pred             ecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          286 TRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       286 ~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      ..+.+++.++++++||+.+......
T Consensus       226 f~s~~el~~ll~~aGF~~~~~~~~~  250 (261)
T PLN02233        226 YLTGEELEKLALEAGFSSAKHYEIS  250 (261)
T ss_pred             cCCHHHHHHHHHHCCCCEEEEEEcC
Confidence            2588999999999999998866543

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.83  E-value=2.5e-20  Score=164.11  Aligned_cols=171  Identities=17%  Similarity=0.220  Sum_probs=136.5

Q ss_pred             cccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCC-------CcEEEEcCCHHHHHHHHHH
Q 018970          127 FGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARES  199 (348)
Q Consensus       127 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-------~~v~~vD~S~~~l~~a~~~  199 (348)
                      |+.+++......++++++++..++.   +.++.++||++||||.++..+++...       .+|+++|+||.||+.++++
T Consensus        73 YD~mND~mSlGiHRlWKd~~v~~L~---p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR  149 (296)
T KOG1540|consen   73 YDIMNDAMSLGIHRLWKDMFVSKLG---PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR  149 (296)
T ss_pred             HHHHHHHhhcchhHHHHHHhhhccC---CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH
Confidence            4556666677778888888887776   77889999999999999999987632       2799999999999999999


Q ss_pred             hCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC-c--
Q 018970          200 LAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG-F--  276 (348)
Q Consensus       200 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~-~--  276 (348)
                      ..+.++..   .....|.++|++++|+++++||.+++.+.|.+++  ++.+.+++++|+|||||.|.+.+...... .  
T Consensus       150 a~~~~l~~---~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~  224 (296)
T KOG1540|consen  150 AKKRPLKA---SSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVENEPLK  224 (296)
T ss_pred             HhhcCCCc---CCceEEEeCCcccCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccccccHHHH
Confidence            86655521   2348999999999999999999999999999999  89999999999999999999977433221 0  


Q ss_pred             ------e-----------------ecCCCCcee--cCHHHHHHHHHhcCCeEEE
Q 018970          277 ------V-----------------LDKEDRSIT--RSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       277 ------~-----------------~d~~~~~~~--~s~~~l~~l~~~aGf~~v~  305 (348)
                            .                 ++....++.  .+.+++..+++++||..+.
T Consensus       225 ~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  225 WFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             HHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence                  0                 011112222  3778999999999999886

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.83  E-value=1.5e-19  Score=166.41  Aligned_cols=148  Identities=20%  Similarity=0.239  Sum_probs=119.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|..+..++.....+|+++|+|+.|++.|++++..        ..++.+.+.|+.+.++++++||+|
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~~~~~~~~~~FD~V  121 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDILKKDFPENTFDMI  121 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCcccCCCCCCCeEEE
Confidence            577889999999999999988765444799999999999999998754        346899999998887777899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC-------CCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK-------EDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~-------~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      ++..+++|++.++...++++++++|||||.|++.+...........       .......+..++.++++++||+.+...
T Consensus       122 ~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~  201 (263)
T PTZ00098        122 YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK  201 (263)
T ss_pred             EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence            9999999998768899999999999999999998764432110100       011112488899999999999999877


Q ss_pred             ecC
Q 018970          308 DQK  310 (348)
Q Consensus       308 ~~~  310 (348)
                      +..
T Consensus       202 d~~  204 (263)
T PTZ00098        202 DIS  204 (263)
T ss_pred             eCc
Confidence            643

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.81  E-value=3.5e-19  Score=164.78  Aligned_cols=215  Identities=32%  Similarity=0.409  Sum_probs=173.5

Q ss_pred             hhhhHHHhhhhccccccccccc-cccCcccccc---cChhhhHHHHHHHHhhhcCC--ccCCCCCcEEEEeccccHHHHH
Q 018970          101 KKTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDRFPN--ARNNQHLVALDCGSGIGRITKN  174 (348)
Q Consensus       101 ~~~~~y~~~~~yW~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~l~~~l~~~l~~--~~~~~~~~VLDvGcG~G~~~~~  174 (348)
                      ..-.+|.++..||.....+.+| ..++|.+.+.   .++..+..++..+...++.+  .+...-...+|||+|.|+++..
T Consensus       115 ~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~  194 (342)
T KOG3178|consen  115 NTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKN  194 (342)
T ss_pred             hhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHH
Confidence            4557789999999999999999 6788877665   57777778888877654332  1122346899999999999999


Q ss_pred             HHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHH
Q 018970          175 LLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKR  254 (348)
Q Consensus       175 la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~  254 (348)
                      ++. .+.+|.++++....+..+...+. .         .++...+|+..-.+   .-|+||+.|++||++|+|..++|++
T Consensus       195 ll~-~fp~ik~infdlp~v~~~a~~~~-~---------gV~~v~gdmfq~~P---~~daI~mkWiLhdwtDedcvkiLkn  260 (342)
T KOG3178|consen  195 LLS-KYPHIKGINFDLPFVLAAAPYLA-P---------GVEHVAGDMFQDTP---KGDAIWMKWILHDWTDEDCVKILKN  260 (342)
T ss_pred             HHH-hCCCCceeecCHHHHHhhhhhhc-C---------CcceecccccccCC---CcCeEEEEeecccCChHHHHHHHHH
Confidence            998 45569999999998888777763 2         15555566544322   2479999999999999999999999


Q ss_pred             HHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCccceEEEEEEEeecCC
Q 018970          255 AKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALTAEMP  329 (348)
Q Consensus       255 ~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~~l~~v~~~~l~~~~~  329 (348)
                      |+..|+|||.+++.|++.......|..+.+..+..+.+...+..+|.+.+..+.+..+|...||+.+|++.+...
T Consensus       261 C~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~  335 (342)
T KOG3178|consen  261 CKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSY  335 (342)
T ss_pred             HHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCcc
Confidence            999999999999999977655556666778888888899999999999999999999999999999999986643

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.80  E-value=1.7e-18  Score=152.69  Aligned_cols=142  Identities=18%  Similarity=0.244  Sum_probs=111.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..|++++. +|+++|+|+.|++.++++....++      .++++.+.|+.+++.+ ++||+|+
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~~~~-~~fD~I~  100 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLNNLTFD-GEYDFIL  100 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChhhCCcC-CCcCEEE
Confidence            3557999999999999999998766 599999999999999988765433      3478888898887664 6799999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      ++.++||+++++...+++++.++|+|||.+++........... .....+.++.+++.++|+  ||+++...+
T Consensus       101 ~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~-~~~~~~~~~~~el~~~~~--~~~~~~~~~  170 (197)
T PRK11207        101 STVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC-TVGFPFAFKEGELRRYYE--GWEMVKYNE  170 (197)
T ss_pred             EecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC-CCCCCCccCHHHHHHHhC--CCeEEEeeC
Confidence            9999999987789999999999999999976654332211111 112235578889999997  899888643

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.79  E-value=7.9e-19  Score=155.72  Aligned_cols=150  Identities=15%  Similarity=0.197  Sum_probs=114.3

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ  237 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~  237 (348)
                      +.+|||+|||+|.++..|+..+.. |+|+|+++.|++.|++..........+...++++.+.++++..   +.||.|+|.
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~-V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs  165 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQ-VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS  165 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCe-eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence            467999999999999999977765 9999999999999999855433333333345778888888775   459999999


Q ss_pred             hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC-c------------eecCCCCc--eecCHHHHHHHHHhcCCe
Q 018970          238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG-F------------VLDKEDRS--ITRSDFYFKELFSRCGLH  302 (348)
Q Consensus       238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~-~------------~~d~~~~~--~~~s~~~l~~l~~~aGf~  302 (348)
                      .+++|+.  |+..+++.+.+.|||||.+++++....-. +            ......+.  -..+++++..+++.+|+.
T Consensus       166 evleHV~--dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~  243 (282)
T KOG1270|consen  166 EVLEHVK--DPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQ  243 (282)
T ss_pred             HHHHHHh--CHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcc
Confidence            9999999  89999999999999999999986332110 0            01111111  124888999999999999


Q ss_pred             EEEEeecCCCC
Q 018970          303 IYKSKDQKGLP  313 (348)
Q Consensus       303 ~v~~~~~~~~~  313 (348)
                      +..+.....+|
T Consensus       244 v~~v~G~~y~p  254 (282)
T KOG1270|consen  244 VNDVVGEVYNP  254 (282)
T ss_pred             hhhhhcccccc
Confidence            88766555443

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.79  E-value=2.6e-18  Score=158.33  Aligned_cols=163  Identities=19%  Similarity=0.193  Sum_probs=114.9

Q ss_pred             hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce
Q 018970          135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT  214 (348)
Q Consensus       135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i  214 (348)
                      +........+.+.+++.   ++++.+|||||||+|.++..+++++..+|+++.+|+++.+.+++++.+.|+     ..++
T Consensus        43 Le~AQ~~k~~~~~~~~~---l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v  114 (273)
T PF02353_consen   43 LEEAQERKLDLLCEKLG---LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----EDRV  114 (273)
T ss_dssp             HHHHHHHHHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----SSTE
T ss_pred             HHHHHHHHHHHHHHHhC---CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----CCce
Confidence            44444444444444444   899999999999999999999988434699999999999999999988766     4678


Q ss_pred             eEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-----------ee-cCCC
Q 018970          215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-----------VL-DKED  282 (348)
Q Consensus       215 ~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-----------~~-d~~~  282 (348)
                      ++...|..+++   ++||.|++..+++|+..++...+++++.++|||||.+++.........           +. ....
T Consensus       115 ~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFP  191 (273)
T PF02353_consen  115 EVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFP  191 (273)
T ss_dssp             EEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTST
T ss_pred             EEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCC
Confidence            89999988775   489999999999999888899999999999999999998653322211           00 0012


Q ss_pred             CceecCHHHHHHHHHhcCCeEEEEee
Q 018970          283 RSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       283 ~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      .....+...+...++++||++..+..
T Consensus       192 gg~lps~~~~~~~~~~~~l~v~~~~~  217 (273)
T PF02353_consen  192 GGYLPSLSEILRAAEDAGLEVEDVEN  217 (273)
T ss_dssp             TS---BHHHHHHHHHHTT-EEEEEEE
T ss_pred             CCCCCCHHHHHHHHhcCCEEEEEEEE
Confidence            33345778888899999999887654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.79  E-value=6.6e-19  Score=155.23  Aligned_cols=148  Identities=18%  Similarity=0.230  Sum_probs=117.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      -++.+|||||||-|.++..++..+.. |+++|+|+.+|+.|+....+.+       .++++.+...+++....++||+|+
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~-VtgiD~se~~I~~Ak~ha~e~g-------v~i~y~~~~~edl~~~~~~FDvV~  129 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIEVAKLHALESG-------VNIDYRQATVEDLASAGGQFDVVT  129 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCe-eEEecCChHHHHHHHHhhhhcc-------ccccchhhhHHHHHhcCCCccEEE
Confidence            36789999999999999999988865 9999999999999999887653       357788888888776558999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC----------c---eecCCCCcee--cCHHHHHHHHHhcC
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG----------F---VLDKEDRSIT--RSDFYFKELFSRCG  300 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~----------~---~~d~~~~~~~--~s~~~l~~l~~~aG  300 (348)
                      |..+++|++  |+..+++.|.+++||||.+++++......          +   .+....+.+.  ..++++...+..+|
T Consensus       130 cmEVlEHv~--dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~  207 (243)
T COG2227         130 CMEVLEHVP--DPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN  207 (243)
T ss_pred             EhhHHHccC--CHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence            999999999  78899999999999999999987543211          0   1122222222  46778888888899


Q ss_pred             CeEEEEeecCCCC
Q 018970          301 LHIYKSKDQKGLP  313 (348)
Q Consensus       301 f~~v~~~~~~~~~  313 (348)
                      +.+.........|
T Consensus       208 ~~~~~~~g~~y~p  220 (243)
T COG2227         208 LKIIDRKGLTYNP  220 (243)
T ss_pred             ceEEeecceEecc
Confidence            9988866544433

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.78  E-value=3.6e-18  Score=154.14  Aligned_cols=148  Identities=15%  Similarity=0.139  Sum_probs=115.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+|||+|.++..++... .. .|+++|+|+.|++.+++++...++      .++++.+.|+.+++.++++||
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD  116 (231)
T TIGR02752        43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAMELPFDDNSFD  116 (231)
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechhcCCCCCCCcc
Confidence            5677899999999999999988764 32 799999999999999998765322      468899999988877678999


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce--------e-----------cCCC---------Cc
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV--------L-----------DKED---------RS  284 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~--------~-----------d~~~---------~~  284 (348)
                      +|++..+++|++  +...+++++.++|+|||.+++.+........        +           ....         ..
T Consensus       117 ~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  194 (231)
T TIGR02752       117 YVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTR  194 (231)
T ss_pred             EEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHH
Confidence            999999999998  7789999999999999999987754322100        0           0000         00


Q ss_pred             eecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          285 ITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       285 ~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      ...+.+++.++++++||++++.....
T Consensus       195 ~~~~~~~l~~~l~~aGf~~~~~~~~~  220 (231)
T TIGR02752       195 DFPGMDELAEMFQEAGFKDVEVKSYT  220 (231)
T ss_pred             HcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence            11477889999999999998765443

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.78  E-value=2e-18  Score=146.26  Aligned_cols=132  Identities=23%  Similarity=0.299  Sum_probs=103.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++..+. +|+++|+|+.+++.     .           +......+......++++||+|
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~fD~i   82 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----R-----------NVVFDNFDAQDPPFPDGSFDLI   82 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----T-----------TSEEEEEECHTHHCHSSSEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----h-----------hhhhhhhhhhhhhccccchhhH
Confidence            35678999999999999999987777 69999999999987     1           1223333333333445899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC---------CceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS---------GFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~---------~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      +++.+|+|++  ++..+|+.+.++|||||++++.+.....         .+......+...++.++|.++++++||++++
T Consensus        83 ~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen   83 ICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             EEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred             hhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence            9999999999  7899999999999999999998866431         1111112444557999999999999999986

...

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.78  E-value=5.4e-18  Score=154.44  Aligned_cols=163  Identities=19%  Similarity=0.195  Sum_probs=127.0

Q ss_pred             hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce
Q 018970          135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT  214 (348)
Q Consensus       135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i  214 (348)
                      +......-.+.+.+.+.   ++++.+|||||||+|.+++++++++..+|+|+++|+++.+.+++++...|+     ..++
T Consensus        53 L~eAQ~~k~~~~~~kl~---L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----~~~v  124 (283)
T COG2230          53 LEEAQRAKLDLILEKLG---LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----EDNV  124 (283)
T ss_pred             hHHHHHHHHHHHHHhcC---CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----Cccc
Confidence            33333333344444444   899999999999999999999988644799999999999999999988776     4678


Q ss_pred             eEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC----C---cee-cCCCCcee
Q 018970          215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS----G---FVL-DKEDRSIT  286 (348)
Q Consensus       215 ~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~----~---~~~-d~~~~~~~  286 (348)
                      ++...|..++.   +.||-|++..+++|+..++...+++++.++|+|||.+++-......    .   +.. -.......
T Consensus       125 ~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~l  201 (283)
T COG2230         125 EVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGEL  201 (283)
T ss_pred             EEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcC
Confidence            99999988876   4599999999999999888999999999999999999986543322    1   110 01233334


Q ss_pred             cCHHHHHHHHHhcCCeEEEEee
Q 018970          287 RSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       287 ~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      .+...+.+...++||.+..+..
T Consensus       202 Ps~~~i~~~~~~~~~~v~~~~~  223 (283)
T COG2230         202 PSISEILELASEAGFVVLDVES  223 (283)
T ss_pred             CCHHHHHHHHHhcCcEEehHhh
Confidence            5778888999999999887553

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.78  E-value=2.2e-18  Score=132.72  Aligned_cols=95  Identities=27%  Similarity=0.378  Sum_probs=82.9

Q ss_pred             EEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhh
Q 018970          162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG  241 (348)
Q Consensus       162 LDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~  241 (348)
                      ||+|||+|..+..+++....+|+++|+|+.+++.++++...         .+..+...|+.++++++++||+|++..+++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~   71 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLH   71 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCcccccccccccccccee
Confidence            89999999999999988455799999999999999999865         345599999999998899999999999999


Q ss_pred             cCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970          242 HLTDDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       242 ~~~~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      |++  ++..+++++.|+|||||+++|
T Consensus        72 ~~~--~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   72 HLE--DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             GSS--HHHHHHHHHHHHEEEEEEEEE
T ss_pred             ecc--CHHHHHHHHHHHcCcCeEEeC
Confidence            996  889999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR00452 methyltransferase, putative

Probab=99.77  E-value=1.3e-17  Score=156.22  Aligned_cols=145  Identities=17%  Similarity=0.155  Sum_probs=111.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHH---HhCCCCCCCcCCCcceeEEEcCCCCCCCCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE---SLAPENHMAPDMHKATNFFCVPLQDFTPETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~---~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  231 (348)
                      ..++.+|||||||+|.++..++..+...|+|+|+|+.|+..++.   ....        ..++.+...++++++.. .+|
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~--------~~~v~~~~~~ie~lp~~-~~F  189 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN--------DKRAILEPLGIEQLHEL-YAF  189 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc--------CCCeEEEECCHHHCCCC-CCc
Confidence            45567999999999999999988877789999999999976532   2222        24577888888888754 589


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc---e-----ecC-CCCceecCHHHHHHHHHhcCCe
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF---V-----LDK-EDRSITRSDFYFKELFSRCGLH  302 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~---~-----~d~-~~~~~~~s~~~l~~l~~~aGf~  302 (348)
                      |+|+++.+++|++  ++..+|++++++|||||.|++.+.......   .     +.. ....+..+...+.++++++||+
T Consensus       190 D~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~  267 (314)
T TIGR00452       190 DTVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFE  267 (314)
T ss_pred             CEEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCe
Confidence            9999999999998  788999999999999999998754322111   0     011 1112335889999999999999


Q ss_pred             EEEEeecC
Q 018970          303 IYKSKDQK  310 (348)
Q Consensus       303 ~v~~~~~~  310 (348)
                      .++.....
T Consensus       268 ~V~i~~~~  275 (314)
T TIGR00452       268 NFRILDVL  275 (314)
T ss_pred             EEEEEecc
Confidence            99866543

Known examples to date are restricted to the proteobacteria.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.77  E-value=5.5e-18  Score=155.39  Aligned_cols=144  Identities=19%  Similarity=0.216  Sum_probs=111.9

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~I  234 (348)
                      .++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|+++....++     ..++++.++|+.++. ..+++||+|
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~~l~~~~~~~fD~V  116 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQDIAQHLETPVDLI  116 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHHHHhhhcCCCCCEE
Confidence            4567999999999999999998765 599999999999999998876543     356889999987764 345789999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC---------c--e---ec-CCC----CceecCHHHHHHH
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG---------F--V---LD-KED----RSITRSDFYFKEL  295 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~---------~--~---~d-~~~----~~~~~s~~~l~~l  295 (348)
                      ++..+++|++  ++..+++++.++|||||.+++........         +  .   .. ...    ....++.+++.++
T Consensus       117 ~~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~  194 (255)
T PRK11036        117 LFHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQW  194 (255)
T ss_pred             EehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHH
Confidence            9999999998  67899999999999999998864221110         0  0   00 000    0123578999999


Q ss_pred             HHhcCCeEEEEe
Q 018970          296 FSRCGLHIYKSK  307 (348)
Q Consensus       296 ~~~aGf~~v~~~  307 (348)
                      ++++||+++...
T Consensus       195 l~~aGf~~~~~~  206 (255)
T PRK11036        195 LEEAGWQIMGKT  206 (255)
T ss_pred             HHHCCCeEeeee
Confidence            999999988644

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.77  E-value=1.3e-17  Score=157.45  Aligned_cols=145  Identities=19%  Similarity=0.186  Sum_probs=112.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHH--hCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~--~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..+.+|||||||+|.++..++..++..|+|+|+|+.|+..++..  ....       ..++.+..+|+++++. .++||+
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-------~~~i~~~~~d~e~lp~-~~~FD~  192 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-------DQRAHLLPLGIEQLPA-LKAFDT  192 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-------CCCeEEEeCCHHHCCC-cCCcCE
Confidence            35679999999999999999988877899999999999765432  2110       2468999999999887 588999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc--------eecCC-CCceecCHHHHHHHHHhcCCeEE
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF--------VLDKE-DRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~--------~~d~~-~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      |++..+++|+.  ++..++++++++|+|||.+++.........        .+... ...+..+.+.+.++++++||+.+
T Consensus       193 V~s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i  270 (322)
T PRK15068        193 VFSMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDV  270 (322)
T ss_pred             EEECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceE
Confidence            99999999998  788999999999999999998753321110        01111 11233588999999999999999


Q ss_pred             EEeecC
Q 018970          305 KSKDQK  310 (348)
Q Consensus       305 ~~~~~~  310 (348)
                      +.....
T Consensus       271 ~~~~~~  276 (322)
T PRK15068        271 RIVDVS  276 (322)
T ss_pred             EEEeCC
Confidence            876543

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.77  E-value=1.3e-17  Score=149.68  Aligned_cols=142  Identities=22%  Similarity=0.230  Sum_probs=113.7

Q ss_pred             cEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeech
Q 018970          160 VALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW  238 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~  238 (348)
                      +|||||||+|.++..+++.+. .+|+++|+|+.+++.+++++...++     ..++++...|+.+.+.+ ++||+|++..
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~~~~~~~-~~fD~I~~~~   75 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDSAKDPFP-DTYDLVFGFE   75 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEecccccCCCC-CCCCEeehHH
Confidence            699999999999999987764 3799999999999999998876544     45689999998766544 6899999999


Q ss_pred             hhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee-cCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL-DKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       239 ~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~-d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      +++|+.  +...+++++.++|||||.+++.+......... ......+..+..+|.++++++||++++....
T Consensus        76 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~  145 (224)
T smart00828       76 VIHHIK--DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA  145 (224)
T ss_pred             HHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence            999998  67899999999999999999987643211111 1112233468889999999999999986653

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.76  E-value=4.7e-17  Score=153.62  Aligned_cols=145  Identities=20%  Similarity=0.143  Sum_probs=113.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      .++.+|||||||+|.++..+++... .+|+++|+|+.|++.|+++...         .++++...|+.++++++++||+|
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDvV  182 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADRY  182 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeEE
Confidence            4567999999999999998886643 3799999999999999987542         35788999999888777899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee--cCCCCceecCHHHHHHHHHhcCCeEEEEeecCC
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL--DKEDRSITRSDFYFKELFSRCGLHIYKSKDQKG  311 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~--d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~  311 (348)
                      +++.+++|++  +...+++++.++|||||.+++.+.........  .........+.+++.++++++||+.++......
T Consensus       183 Is~~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~  259 (340)
T PLN02490        183 VSAGSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGP  259 (340)
T ss_pred             EEcChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcCh
Confidence            9999999998  66789999999999999998876432211100  000011124789999999999999998776543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.76  E-value=1.7e-17  Score=146.02  Aligned_cols=142  Identities=15%  Similarity=0.199  Sum_probs=108.9

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..+++++. .|+++|+|+.|++.++++....++       .+.+...|+..++.+ ++||+|+
T Consensus        29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~~~~~~-~~fD~I~   99 (195)
T TIGR00477        29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-------PLRTDAYDINAAALN-EDYDFIF   99 (195)
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccchhcccc-CCCCEEE
Confidence            3457999999999999999998776 599999999999999887755322       366777777666554 6899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      ++.++||++.++...+++++.++|||||++++.+.......... ....+.++.+++.++|.  +|+++.....
T Consensus       100 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~-~~~~~~~~~~el~~~f~--~~~~~~~~e~  170 (195)
T TIGR00477       100 STVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH-MPFSFTFKEDELRQYYA--DWELLKYNEA  170 (195)
T ss_pred             EecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC-CCcCccCCHHHHHHHhC--CCeEEEeecc
Confidence            99999999877888999999999999999776653322211111 12234578999999997  5888886643

Part of a tellurite-reducing operon tehA and tehB

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.75  E-value=1.4e-17  Score=151.87  Aligned_cols=145  Identities=14%  Similarity=0.201  Sum_probs=112.0

Q ss_pred             CCCCcEEEEeccccHHHHHHHHh--CC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          156 NQHLVALDCGSGIGRITKNLLIR--YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~--~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      .++.+|||||||+|..+..++..  .+ .+|+++|+|+.|++.|++++...+.     ..++++.+.|+.+++.+  .+|
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~D  127 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIAIE--NAS  127 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChhhCCCC--CCC
Confidence            46679999999999999888763  22 2799999999999999999865433     34689999999887754  599


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-----------------eecC----------CCCce
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-----------------VLDK----------EDRSI  285 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-----------------~~d~----------~~~~~  285 (348)
                      +|+++.++||+++++...++++++++|||||.|++.+.......                 .+..          .....
T Consensus       128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~  207 (247)
T PRK15451        128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVML  207 (247)
T ss_pred             EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc
Confidence            99999999999977788999999999999999999874432110                 0000          00111


Q ss_pred             ecCHHHHHHHHHhcCCeEEEEe
Q 018970          286 TRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       286 ~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      ..+.++..++++++||..+...
T Consensus       208 ~~~~~~~~~~L~~aGF~~v~~~  229 (247)
T PRK15451        208 TDSVETHKARLHKAGFEHSELW  229 (247)
T ss_pred             cCCHHHHHHHHHHcCchhHHHH
Confidence            2488889999999999976543

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.75  E-value=2e-17  Score=151.64  Aligned_cols=137  Identities=16%  Similarity=0.238  Sum_probs=105.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+|||||||+|.++..++...+. .|+++|+|+.|++.|++.             ++++.++|++++. +.++||+
T Consensus        27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~~~-~~~~fD~   92 (255)
T PRK14103         27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVRDWK-PKPDTDV   92 (255)
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChhhCC-CCCCceE
Confidence            456789999999999999999887543 799999999999999753             3678889998875 3479999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc-C-CCc----------eec----CC---CCceecCHHHHHH
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA-R-SGF----------VLD----KE---DRSITRSDFYFKE  294 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~-~-~~~----------~~d----~~---~~~~~~s~~~l~~  294 (348)
                      |+++.++||++  +...++++++++|||||.+++..... . ...          .+.    ..   ......+.+.+.+
T Consensus        93 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  170 (255)
T PRK14103         93 VVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAE  170 (255)
T ss_pred             EEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHH
Confidence            99999999998  77899999999999999999863211 0 000          000    00   0112247889999


Q ss_pred             HHHhcCCeEEEEe
Q 018970          295 LFSRCGLHIYKSK  307 (348)
Q Consensus       295 l~~~aGf~~v~~~  307 (348)
                      +++++||.+....
T Consensus       171 ~l~~aGf~v~~~~  183 (255)
T PRK14103        171 LLTDAGCKVDAWE  183 (255)
T ss_pred             HHHhCCCeEEEEe
Confidence            9999999865544

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.75  E-value=3.9e-17  Score=162.73  Aligned_cols=145  Identities=19%  Similarity=0.180  Sum_probs=115.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++......|+++|+|+.|++.|+++....       ..++.|.+.|+.+.++++++||+|
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~~~~~~~~~fD~I  336 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCTKKTYPDNSFDVI  336 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCcccCCCCCCCEEEE
Confidence            4567899999999999999888765447999999999999999876432       346899999998887766799999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce---e---cCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV---L---DKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~---~---d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      ++..+++|++  ++..++++++++|||||.|++.+........   +   -........+..++.++++++||+++....
T Consensus       337 ~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d  414 (475)
T PLN02336        337 YSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAED  414 (475)
T ss_pred             EECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence            9999999999  7889999999999999999998754322110   0   001112235788899999999999987654

>TIGR00740 methyltransferase, putative

Probab=99.73  E-value=2.5e-17  Score=149.51  Aligned_cols=143  Identities=14%  Similarity=0.211  Sum_probs=112.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC--C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY--F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~--~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      .++.+|||+|||+|.++..+++..  + ..|+++|+|+.|++.|++++...+.     ..++++.+.|+.+++.+  .+|
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~d  124 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRHVEIK--NAS  124 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChhhCCCC--CCC
Confidence            466799999999999999998763  2 2799999999999999998765322     24688999999988754  589


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-----ee---------cCC-------------CCce
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-----VL---------DKE-------------DRSI  285 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-----~~---------d~~-------------~~~~  285 (348)
                      +|+++.++||+++++...++++++++|||||.|++.+.......     ..         +..             ....
T Consensus       125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  204 (239)
T TIGR00740       125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMR  204 (239)
T ss_pred             EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCC
Confidence            99999999999987889999999999999999999986432211     00         000             0112


Q ss_pred             ecCHHHHHHHHHhcCCeEEE
Q 018970          286 TRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       286 ~~s~~~l~~l~~~aGf~~v~  305 (348)
                      ..+.+++.++++++||..++
T Consensus       205 ~~s~~~~~~~l~~aGF~~~~  224 (239)
T TIGR00740       205 TDSIETHKARLKNVGFSHVE  224 (239)
T ss_pred             CCCHHHHHHHHHHcCCchHH
Confidence            35889999999999998654

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.73  E-value=8.4e-17  Score=150.01  Aligned_cols=140  Identities=19%  Similarity=0.212  Sum_probs=110.5

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ  237 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~  237 (348)
                      +.+|||+|||+|.++..++..+. .|+++|+|+.|++.+++++...+       .++.+...|+..... +++||+|+++
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~-------l~v~~~~~D~~~~~~-~~~fD~I~~~  191 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKEN-------LNIRTGLYDINSASI-QEEYDFILST  191 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-------CceEEEEechhcccc-cCCccEEEEc
Confidence            45999999999999999998776 59999999999999998876542       257778888877655 4789999999


Q ss_pred             hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      .++||+++++...+++++.++|+|||++++.......... ......+.++..++.+++..  |+++...+.
T Consensus       192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~-~~~p~~~~~~~~el~~~~~~--~~i~~~~e~  260 (287)
T PRK12335        192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP-CPMPFSFTFKEGELKDYYQD--WEIVKYNEN  260 (287)
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC-CCCCCCcccCHHHHHHHhCC--CEEEEEecc
Confidence            9999998878899999999999999997775433221111 11233455789999999975  998886543

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.73  E-value=1.7e-16  Score=145.15  Aligned_cols=136  Identities=15%  Similarity=0.217  Sum_probs=106.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+. .|+++|+|+.|++.++++...           ..+.++|++++++++++||+|+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~~-----------~~~~~~d~~~~~~~~~~fD~V~  108 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDAA-----------DHYLAGDIESLPLATATFDLAW  108 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCC-----------CCEEEcCcccCcCCCCcEEEEE
Confidence            3567899999999999998886654 699999999999999887532           4678899999887778999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-------eecCCCCce-ecCHHHHHHHHHhcCCeEEE
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-------VLDKEDRSI-TRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-------~~d~~~~~~-~~s~~~l~~l~~~aGf~~v~  305 (348)
                      ++.++++++  ++..+++++.++|+|||.++++......-.       ..+...... ..+.+++..++.+.|+....
T Consensus       109 s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  184 (251)
T PRK10258        109 SNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQHHI  184 (251)
T ss_pred             ECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCceeee
Confidence            999999988  788999999999999999999864432111       011111112 24788999999988877543

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.73  E-value=2.1e-17  Score=131.89  Aligned_cols=107  Identities=24%  Similarity=0.232  Sum_probs=87.0

Q ss_pred             CCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC-CCCCCCCCceeEE
Q 018970          157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVI  234 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~fD~I  234 (348)
                      |+.+|||||||+|.++..+++. ...+|+++|+|+.|++.|++++...+.     ..++++.+.|+ ...... +.||+|
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~-~~~D~v   74 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDAEFDPDFL-EPFDLV   74 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCCHGGTTTS-SCEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECccccCcccC-CCCCEE
Confidence            4579999999999999999983 333699999999999999999833222     57899999999 333333 579999


Q ss_pred             eech-hhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          235 WVQW-CIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       235 i~~~-~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ++.+ +++++.. ++...+++++.+.|+|||+|++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999 6665543 578899999999999999999875

...

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.72  E-value=1.4e-16  Score=147.34  Aligned_cols=147  Identities=19%  Similarity=0.140  Sum_probs=113.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+|||+|..+..++... .. .|+++|+|+.|++.|+++....++      .++++...|+++++.++++||
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~~~~~~fD  148 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALPVADNSVD  148 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCCCCCCcee
Confidence            5678899999999999887766543 32 699999999999999998765432      367899999998887778999


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee---c---C--CCCceecCHHHHHHHHHhcCCeEE
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL---D---K--EDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~---d---~--~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      +|+++.+++|.+  +...+++++.++|||||.|++.+.........   .   .  .......+..++.++++++||..+
T Consensus       149 ~Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v  226 (272)
T PRK11873        149 VIISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI  226 (272)
T ss_pred             EEEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence            999999999988  67789999999999999999987554322100   0   0  001112477889999999999988


Q ss_pred             EEeec
Q 018970          305 KSKDQ  309 (348)
Q Consensus       305 ~~~~~  309 (348)
                      .....
T Consensus       227 ~i~~~  231 (272)
T PRK11873        227 TIQPK  231 (272)
T ss_pred             EEEec
Confidence            76443

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.71  E-value=6.3e-17  Score=140.48  Aligned_cols=140  Identities=19%  Similarity=0.190  Sum_probs=105.0

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      -++.++||+|||.|+.+.+|+.+|++ |+++|.|+..++.+++.+...+       ..++..+.|++++.++ +.||+|+
T Consensus        29 ~~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~-------l~i~~~~~Dl~~~~~~-~~yD~I~   99 (192)
T PF03848_consen   29 LKPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEG-------LDIRTRVADLNDFDFP-EEYDFIV   99 (192)
T ss_dssp             S-SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGCCBS-T-TTEEEEE
T ss_pred             cCCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcC-------ceeEEEEecchhcccc-CCcCEEE
Confidence            35679999999999999999999996 9999999999999988776543       3588999999998876 6899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      +..+++|++.+....+++.+...++|||++++........+. ......+.+...++.+.+.  |++++.-.
T Consensus       100 st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p-~~~~~~f~~~~~EL~~~y~--dW~il~y~  168 (192)
T PF03848_consen  100 STVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYP-CPSPFPFLLKPGELREYYA--DWEILKYN  168 (192)
T ss_dssp             EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS---SS--S--B-TTHHHHHTT--TSEEEEEE
T ss_pred             EEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCC-CCCCCCcccCHHHHHHHhC--CCeEEEEE
Confidence            999999999988999999999999999998886543322221 2233455567778888887  58888743

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.70  E-value=1.1e-16  Score=135.19  Aligned_cols=107  Identities=20%  Similarity=0.297  Sum_probs=91.7

Q ss_pred             CCCCcEEEEeccccHHHHHHHHh-CC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~-~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~f  231 (348)
                      +++.+|||+|||+|.++..++.. ++ .+++|+|+|+.|++.|++.+...++      .+++|.+.|+.+++  ++ +.|
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~l~~~~~-~~~   74 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIEDLPQELE-EKF   74 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTCGCGCSS-TTE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhccccccC-CCe
Confidence            35679999999999999999954 32 3799999999999999998765433      37999999999976  44 789


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      |+|++..+++|+.  +...+++++.++|++||.+++.+..
T Consensus        75 D~I~~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   75 DIIISNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEEEEESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEEcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9999999999999  7789999999999999999998755

...

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.70  E-value=2.4e-15  Score=133.15  Aligned_cols=155  Identities=14%  Similarity=0.188  Sum_probs=107.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+|||||||+|.++..++... ...++|+|+|+.|++.|+++..           ++.+..+|+.+ +.++++||+
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------~~~~~~~d~~~-~~~~~sfD~  108 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------NINIIQGSLFD-PFKDNFFDL  108 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------CCcEEEeeccC-CCCCCCEEE
Confidence            3456789999999999999998763 3379999999999999998753           35677888877 666789999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC-CCCceecCHHHHHHHHHhc-CCeEEE----Ee
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK-EDRSITRSDFYFKELFSRC-GLHIYK----SK  307 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~-~~~~~~~s~~~l~~l~~~a-Gf~~v~----~~  307 (348)
                      |+++.+++|++++++..+++++.+++  ++.+++.+........... .....++..+....+++.. .++++.    ..
T Consensus       109 V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~~  186 (204)
T TIGR03587       109 VLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPSPVEISYRGNSGRLWKRDFAGEMMDRYPDLKLVDYGFPYH  186 (204)
T ss_pred             EEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCCceeeeeeCCcchhhhhhHHHHHHHhCCcceeeeccceee
Confidence            99999999998888999999999997  6788888765443331111 1111223333334444443 366666    33


Q ss_pred             ecCCCCccceEEEEEEEe
Q 018970          308 DQKGLPEELFAVKMYALT  325 (348)
Q Consensus       308 ~~~~~~~~l~~v~~~~l~  325 (348)
                      ++..||.+  .+.+|-+.
T Consensus       187 ~~~~~~~~--~~~~~~~~  202 (204)
T TIGR03587       187 RDPEFPND--DITWFLLE  202 (204)
T ss_pred             cCCCCCCC--CceEEEEe
Confidence            44455544  34455543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.69  E-value=3.9e-16  Score=155.52  Aligned_cols=141  Identities=21%  Similarity=0.352  Sum_probs=113.9

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC--CCCCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~fD~  233 (348)
                      .++.+|||||||+|.++..++..+. .|+++|+|+.|++.+++....        ..++.+.+.|+.+  +++++++||+
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~~~~~~~~~~~fD~  106 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESINGH--------YKNVKFMCADVTSPDLNISDGSVDL  106 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhcc--------CCceEEEEecccccccCCCCCCEEE
Confidence            3456899999999999999987654 699999999999988764332        3568899999863  4556679999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC-ceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG-FVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~-~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      |+++.+++|++++++..+++++.++|||||++++.++..... ...+..+....++...|.++|.++||....
T Consensus       107 I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  179 (475)
T PLN02336        107 IFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDED  179 (475)
T ss_pred             EehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCC
Confidence            999999999998778999999999999999999998764332 222333455556788999999999998775

>PRK08317 hypothetical protein; Provisional

Probab=99.69  E-value=7.5e-16  Score=138.85  Aligned_cols=144  Identities=20%  Similarity=0.182  Sum_probs=111.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+|||+|.++..++... + .+|+++|+|+.+++.++++....       ..++.+...|+.+++...++||
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~D   89 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDADGLPFPDGSFD   89 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEecccccCCCCCCCce
Confidence            5677899999999999999998765 2 37999999999999999873221       3568899999988777678999


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCC--------------CceecCHHHHHHHHHh
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKED--------------RSITRSDFYFKELFSR  298 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~--------------~~~~~s~~~l~~l~~~  298 (348)
                      +|++..+++|+.  ++..+++++.++|||||.+++.+...... ......              .....+...+.+++++
T Consensus        90 ~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  166 (241)
T PRK08317         90 AVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDTDWDTL-VWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFRE  166 (241)
T ss_pred             EEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEecCCCce-eecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            999999999999  78899999999999999999987432111 010000              0011344578999999


Q ss_pred             cCCeEEEEee
Q 018970          299 CGLHIYKSKD  308 (348)
Q Consensus       299 aGf~~v~~~~  308 (348)
                      +||..+....
T Consensus       167 aGf~~~~~~~  176 (241)
T PRK08317        167 AGLTDIEVEP  176 (241)
T ss_pred             cCCCceeEEE
Confidence            9999876543

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.69  E-value=3e-16  Score=137.63  Aligned_cols=185  Identities=19%  Similarity=0.316  Sum_probs=135.7

Q ss_pred             hHHHhhhhccccccccccccccCcccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC--
Q 018970          104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--  181 (348)
Q Consensus       104 ~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~--  181 (348)
                      .+-..+..||+....           .+...+.-.+++|.+-+...+.... +...+|||||||.|.....+++...+  
T Consensus        30 ~y~~~~~k~wD~fy~-----------~~~~rFfkdR~wL~~Efpel~~~~~-~~~~~ilEvGCGvGNtvfPll~~~~n~~   97 (264)
T KOG2361|consen   30 KYEREASKYWDTFYK-----------IHENRFFKDRNWLLREFPELLPVDE-KSAETILEVGCGVGNTVFPLLKTSPNNR   97 (264)
T ss_pred             hhhcchhhhhhhhhh-----------hccccccchhHHHHHhhHHhhCccc-cChhhheeeccCCCcccchhhhcCCCCC
Confidence            444566788885321           2223344456777777777665222 22228999999999999999976655  


Q ss_pred             -cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC----CCCCCceeEEeechhhhcCChhhHHHHHHHHH
Q 018970          182 -EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK  256 (348)
Q Consensus       182 -~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~  256 (348)
                       .|.+.|.|+.+++..+++....       ..++...+.|+..-    +++.+++|.|++..+|..++++....+++++.
T Consensus        98 l~v~acDfsp~Ai~~vk~~~~~~-------e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~  170 (264)
T KOG2361|consen   98 LKVYACDFSPRAIELVKKSSGYD-------ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLR  170 (264)
T ss_pred             eEEEEcCCChHHHHHHHhccccc-------hhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHH
Confidence             7999999999999998876432       23455555565542    24568999999999999999999999999999


Q ss_pred             HcCCCCcEEEEEeccc---------------CCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          257 VGLKPGGFFVLKENIA---------------RSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       257 ~~LkpgG~lii~~~~~---------------~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      ++|||||.|++.+-..               ..-++.+.....+.++.+++.++|.++||..++..
T Consensus       171 ~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~  236 (264)
T KOG2361|consen  171 TLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLE  236 (264)
T ss_pred             HHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhccc
Confidence            9999999999975211               11224455566677899999999999999988743

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.68  E-value=1.5e-15  Score=139.47  Aligned_cols=137  Identities=19%  Similarity=0.304  Sum_probs=104.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+|||||||+|.++..++...+ ..|+++|+|+.|++.|+++..           ++.+...|+.++... ++||+
T Consensus        29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~d~~~~~~~-~~fD~   96 (258)
T PRK01683         29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------DCQFVEADIASWQPP-QALDL   96 (258)
T ss_pred             CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------CCeEEECchhccCCC-CCccE
Confidence            46678999999999999999987754 379999999999999998753           478888998877543 68999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC--C------------ce--e-cCC-CCceecCHHHHHHH
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS--G------------FV--L-DKE-DRSITRSDFYFKEL  295 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~--~------------~~--~-d~~-~~~~~~s~~~l~~l  295 (348)
                      |+++.++||++  +...+++++.++|||||.+++.......  .            +.  + ... ......+...+.++
T Consensus        97 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  174 (258)
T PRK01683         97 IFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDA  174 (258)
T ss_pred             EEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHH
Confidence            99999999998  6789999999999999999986321110  0            00  0 000 11122466778999


Q ss_pred             HHhcCCeEEE
Q 018970          296 FSRCGLHIYK  305 (348)
Q Consensus       296 ~~~aGf~~v~  305 (348)
                      +.++|+.+..
T Consensus       175 l~~~g~~v~~  184 (258)
T PRK01683        175 LAPAACRVDI  184 (258)
T ss_pred             HHhCCCceee
Confidence            9999987544

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.68  E-value=1.6e-15  Score=135.00  Aligned_cols=147  Identities=12%  Similarity=-0.009  Sum_probs=106.7

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCC------CcCCCcceeEEEcCCCCCCCC-C
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPE-T  228 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~------~~~~~~~i~~~~~d~~~~~~~-~  228 (348)
                      .++.+|||+|||.|+.+..|++++.. |+++|+|+.+++.+.+........      ......++++.++|+.+++.. .
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~  111 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL  111 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence            45679999999999999999999886 999999999999865432110000      000134689999999988743 3


Q ss_pred             CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      +.||.|+...+++|++.+....+++.+.++|||||.+++........   ......+..+.+++.++|.. +|++....
T Consensus       112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~---~~~gpp~~~~~~eL~~~f~~-~~~i~~~~  186 (213)
T TIGR03840       112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQS---EMAGPPFSVSPAEVEALYGG-HYEIELLE  186 (213)
T ss_pred             CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCC---CCCCcCCCCCHHHHHHHhcC-CceEEEEe
Confidence            57999999999999998888999999999999999866654322111   01122345788999999974 45555433

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.68  E-value=6.9e-17  Score=126.88  Aligned_cols=96  Identities=24%  Similarity=0.480  Sum_probs=81.5

Q ss_pred             EEEEeccccHHHHHHHHhC---C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          161 ALDCGSGIGRITKNLLIRY---F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       161 VLDvGcG~G~~~~~la~~~---~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      |||+|||+|..+..++...   + ..++++|+|+.|++.++++....       ..++++.+.|+.+++...++||+|++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-------~~~~~~~~~D~~~l~~~~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-------GPKVRFVQADARDLPFSDGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-------TTTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-------CCceEEEECCHhHCcccCCCeeEEEE
Confidence            7999999999999998775   2 47999999999999999988643       23689999999998876789999999


Q ss_pred             c-hhhhcCChhhHHHHHHHHHHcCCCCc
Q 018970          237 Q-WCIGHLTDDDFVSFFKRAKVGLKPGG  263 (348)
Q Consensus       237 ~-~~l~~~~~~d~~~~l~~~~~~LkpgG  263 (348)
                      . .+++|+++++...+++++.++|+|||
T Consensus        74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   74 SGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            5 55999999999999999999999998

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.67  E-value=8.3e-16  Score=138.69  Aligned_cols=137  Identities=20%  Similarity=0.265  Sum_probs=107.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..+.+|||+|||+|.++..++..++. .++++|+|+.+++.+++...          .++.+...|+.+.+.++++||+|
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~fD~v  102 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEKLPLEDSSFDLI  102 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhhCCCCCCceeEE
Confidence            34578999999999999999887654 68999999999999988764          25788999999888767899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce----ecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV----LDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~----~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      ++..++||+.  ++..+++++.++|+|||.+++..........    ... ......+.+.+.+++..+ |..+..
T Consensus       103 i~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~-f~~~~~  174 (240)
T TIGR02072       103 VSNLALQWCD--DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQ-HGLRYLSLDELKALLKNS-FELLTL  174 (240)
T ss_pred             EEhhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHH-hccCCCCHHHHHHHHHHh-cCCcEE
Confidence            9999999998  7889999999999999999998643322110    110 111224778889999887 776553

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.67  E-value=1.9e-15  Score=135.44  Aligned_cols=144  Identities=15%  Similarity=0.175  Sum_probs=110.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+. .|+|+|+|+.|++.|++++...+.     ..++.|.+.|+.+++   ++||+|+
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~~~---~~fD~ii  124 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVNDLLSLC---GEFDIVV  124 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChhhCC---CCcCEEE
Confidence            4567999999999999999987655 699999999999999998765322     236889999988765   6899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc------eec---CCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF------VLD---KEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~------~~d---~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      +..+++|++.+++..+++++.+++++++++.+.........      .+.   .......++.+++.++++++||+++..
T Consensus       125 ~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~  204 (219)
T TIGR02021       125 CMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVRE  204 (219)
T ss_pred             EhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeee
Confidence            99999999877788999999999998777766432110000      011   112233468999999999999999986


Q ss_pred             ee
Q 018970          307 KD  308 (348)
Q Consensus       307 ~~  308 (348)
                      ..
T Consensus       205 ~~  206 (219)
T TIGR02021       205 GL  206 (219)
T ss_pred             ec
Confidence            53

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.67  E-value=1.4e-15  Score=137.26  Aligned_cols=147  Identities=16%  Similarity=0.183  Sum_probs=115.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      .++.+|||+|||+|.++..++..+.  .+++++|+|+.+++.+++++...++     ..++.+...|+.+.+.+.++||+
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~  124 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFVQGDAEALPFPDNSFDA  124 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEEecccccCCCCCCCccE
Confidence            4567999999999999999988774  4899999999999999998765322     35688999999887766678999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-------------------eecCCCC---------ce
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-------------------VLDKEDR---------SI  285 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-------------------~~d~~~~---------~~  285 (348)
                      |++..+++++.  ++..+++++.++|+|||.+++.+.......                   .+.....         ..
T Consensus       125 I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (239)
T PRK00216        125 VTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRA  202 (239)
T ss_pred             EEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHh
Confidence            99999999988  788999999999999999998764332110                   0000000         11


Q ss_pred             ecCHHHHHHHHHhcCCeEEEEeec
Q 018970          286 TRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       286 ~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      .++.+++.++++++||+++.....
T Consensus       203 ~~~~~~~~~~l~~aGf~~~~~~~~  226 (239)
T PRK00216        203 FPDQEELAAMLEEAGFERVRYRNL  226 (239)
T ss_pred             CCCHHHHHHHHHhCCCceeeeeee
Confidence            247788999999999998887753

>PRK06202 hypothetical protein; Provisional

Probab=99.67  E-value=1.4e-15  Score=137.52  Aligned_cols=140  Identities=19%  Similarity=0.264  Sum_probs=102.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHh----CCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCc
Q 018970          156 NQHLVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR  230 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~----~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  230 (348)
                      .++.+|||||||+|.++..|+..    ++. +|+++|+|+.|++.|+++...         .++.+.+.+...++..+++
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~~  129 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGER  129 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCCC
Confidence            45679999999999999888743    332 799999999999999887643         2356666666666555679


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC----------------CceecCCCCce--ecCHHHH
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS----------------GFVLDKEDRSI--TRSDFYF  292 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~----------------~~~~d~~~~~~--~~s~~~l  292 (348)
                      ||+|+++.++||+++++...+++++.++++  |.+++.+.....                .+.......++  .++.+++
T Consensus       130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el  207 (232)
T PRK06202        130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAEL  207 (232)
T ss_pred             ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHH
Confidence            999999999999997767899999999998  555555432211                01111111121  2689999


Q ss_pred             HHHHHhcCCeEEEEe
Q 018970          293 KELFSRCGLHIYKSK  307 (348)
Q Consensus       293 ~~l~~~aGf~~v~~~  307 (348)
                      .+++++ ||++....
T Consensus       208 ~~ll~~-Gf~~~~~~  221 (232)
T PRK06202        208 AALAPQ-GWRVERQW  221 (232)
T ss_pred             HHHhhC-CCeEEecc
Confidence            999999 99977643

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.67  E-value=1.5e-15  Score=135.73  Aligned_cols=144  Identities=17%  Similarity=0.224  Sum_probs=113.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      .++.+|||+|||+|.++..++..++.  .++++|+++.+++.++++...        ..++++...|+.+.+...++||+
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~--------~~~i~~~~~d~~~~~~~~~~~D~  109 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL--------PLNIEFIQADAEALPFEDNSFDA  109 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc--------CCCceEEecchhcCCCCCCcEEE
Confidence            46789999999999999999888764  799999999999999988752        34688999999888766678999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-------------------eecCCCC---------ce
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-------------------VLDKEDR---------SI  285 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-------------------~~d~~~~---------~~  285 (348)
                      |+++.+++|+.  ++..+++++.++|+|||.+++.+.......                   .+.....         ..
T Consensus       110 i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (223)
T TIGR01934       110 VTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRA  187 (223)
T ss_pred             EEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHh
Confidence            99999999988  788999999999999999998764322110                   0000000         01


Q ss_pred             ecCHHHHHHHHHhcCCeEEEEeec
Q 018970          286 TRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       286 ~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      ..+.++|.++++++||+++.....
T Consensus       188 ~~~~~~~~~~l~~aGf~~~~~~~~  211 (223)
T TIGR01934       188 FPSQEELAAMLKEAGFEEVRYRSL  211 (223)
T ss_pred             CCCHHHHHHHHHHcCCccceeeee
Confidence            247788999999999998876643

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.67  E-value=2.3e-15  Score=141.59  Aligned_cols=144  Identities=15%  Similarity=0.153  Sum_probs=112.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..+..+|||||||+|.++..++++++. +++++|. +.+++.+++++...++     ..++++...|+.+.+.+  .+|+
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl-----~~rv~~~~~d~~~~~~~--~~D~  218 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKESYP--EADA  218 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc-----cceEEEEecCccCCCCC--CCCE
Confidence            456779999999999999999988765 7999997 7899999998876554     45789999998765544  3799


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce--e----c----CC-CCc--eecCHHHHHHHHHhcC
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV--L----D----KE-DRS--ITRSDFYFKELFSRCG  300 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~--~----d----~~-~~~--~~~s~~~l~~l~~~aG  300 (348)
                      |++..++|++.+++...++++++++|+|||.+++.|........  +    .    .. ...  -..+.+++.++++++|
T Consensus       219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aG  298 (306)
T TIGR02716       219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLG  298 (306)
T ss_pred             EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcC
Confidence            99999999998767789999999999999999999864332110  0    0    00 000  1134788999999999


Q ss_pred             CeEEEE
Q 018970          301 LHIYKS  306 (348)
Q Consensus       301 f~~v~~  306 (348)
                      |+.+..
T Consensus       299 f~~v~~  304 (306)
T TIGR02716       299 YKDVTM  304 (306)
T ss_pred             CCeeEe
Confidence            997764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.66  E-value=1.8e-15  Score=141.88  Aligned_cols=145  Identities=11%  Similarity=0.129  Sum_probs=102.9

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      ++.+|||||||+|.++..++..+. .|+++|+|+.|++.|+++....+... ....++.|.+.|+.++   +++||+|++
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~-~~~~~~~f~~~Dl~~l---~~~fD~Vv~  218 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAAL-PPEVLPKFEANDLESL---SGKYDTVTC  218 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhccccc-ccccceEEEEcchhhc---CCCcCEEEE
Confidence            467999999999999999997765 59999999999999999875431100 0023578888888665   378999999


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc--------ee-cC--CCCceecCHHHHHHHHHhcCCeEEE
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF--------VL-DK--EDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~--------~~-d~--~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      ..+++|++++....+++.+.++ .+||.+ +........+        .+ +.  ....+.++.+++.++++++||++..
T Consensus       219 ~~vL~H~p~~~~~~ll~~l~~l-~~g~li-Is~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~  296 (315)
T PLN02585        219 LDVLIHYPQDKADGMIAHLASL-AEKRLI-ISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVAR  296 (315)
T ss_pred             cCEEEecCHHHHHHHHHHHHhh-cCCEEE-EEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEE
Confidence            9999999876667788888764 555554 4332111000        01 11  1123445899999999999999886


Q ss_pred             Eee
Q 018970          306 SKD  308 (348)
Q Consensus       306 ~~~  308 (348)
                      ...
T Consensus       297 ~~~  299 (315)
T PLN02585        297 REM  299 (315)
T ss_pred             EEE
Confidence            543

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.65  E-value=1.1e-14  Score=140.69  Aligned_cols=141  Identities=17%  Similarity=0.157  Sum_probs=107.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++.....+|+++|+|+.|++.|+++...         ..+++...|..++   +++||+|
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~l---~~~fD~I  232 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRDL---NGQFDRI  232 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhhc---CCCCCEE
Confidence            577889999999999999999876444799999999999999998743         2477778887665   3689999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-----eecC--CCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-----VLDK--EDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-----~~d~--~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      ++..+++|+...++..+++++.++|||||.+++.........     ..+.  .......+..++...++ .||.+.+..
T Consensus       233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~  311 (383)
T PRK11705        233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWH  311 (383)
T ss_pred             EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEe
Confidence            999999999877788999999999999999999764322111     0110  11122346677777766 589877754


Q ss_pred             e
Q 018970          308 D  308 (348)
Q Consensus       308 ~  308 (348)
                      .
T Consensus       312 ~  312 (383)
T PRK11705        312 N  312 (383)
T ss_pred             c
Confidence            3

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.64  E-value=3.8e-15  Score=128.14  Aligned_cols=146  Identities=23%  Similarity=0.299  Sum_probs=104.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ..-.++||+|||+|.++..|+.+ .+.++++|+|+.+++.|+++...        ..+++|.+.|+.++.++ ++||+|+
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~~P~-~~FDLIV  111 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--------LPHVEWIQADVPEFWPE-GRFDLIV  111 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---S-S-EEEEE
T ss_pred             cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCCCCC-CCeeEEE
Confidence            44468999999999999999855 56799999999999999999987        46899999999887544 8999999


Q ss_pred             echhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCc
Q 018970          236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPE  314 (348)
Q Consensus       236 ~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~  314 (348)
                      ++.+++++.+ +++..+++++...|+|||.|++..........     ....+..+.+.++|.+.=-++-...-....++
T Consensus       112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~-----wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~  186 (201)
T PF05401_consen  112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRR-----WGHAAGAETVLEMLQEHLTEVERVECRGGSPN  186 (201)
T ss_dssp             EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHH-----TT-S--HHHHHHHHHHHSEEEEEEEEE-SSTT
T ss_pred             EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccc-----cCcccchHHHHHHHHHHhhheeEEEEcCCCCC
Confidence            9999999986 68999999999999999999997643221111     22335778888998885444444444555555


Q ss_pred             cc
Q 018970          315 EL  316 (348)
Q Consensus       315 ~l  316 (348)
                      +.
T Consensus       187 ~~  188 (201)
T PF05401_consen  187 ED  188 (201)
T ss_dssp             SE
T ss_pred             Cc
Confidence            53

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.64  E-value=6.4e-15  Score=127.84  Aligned_cols=140  Identities=20%  Similarity=0.151  Sum_probs=107.7

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      ++.+|||+|||+|.++..++..+. +|+++|+|+.|++.+++++...       ..++++...|+.+..  .++||+|++
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~--~~~fD~Vi~   88 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLN-------NVGLDVVMTDLFKGV--RGKFDVILF   88 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHc-------CCceEEEEccccccc--CCcccEEEE
Confidence            446899999999999999987776 6999999999999999987643       235778888876654  358999999


Q ss_pred             chhhhcCChh-------------------hHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHH
Q 018970          237 QWCIGHLTDD-------------------DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFS  297 (348)
Q Consensus       237 ~~~l~~~~~~-------------------d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~  297 (348)
                      +..+++.++.                   -+..+++++.++|||||.+++.....              .....+.+.++
T Consensus        89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~--------------~~~~~~~~~l~  154 (179)
T TIGR00537        89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL--------------NGEPDTFDKLD  154 (179)
T ss_pred             CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc--------------CChHHHHHHHH
Confidence            9888776531                   14678999999999999999976432              12567889999


Q ss_pred             hcCCeEEEEeecCCCCccceEEE
Q 018970          298 RCGLHIYKSKDQKGLPEELFAVK  320 (348)
Q Consensus       298 ~aGf~~v~~~~~~~~~~~l~~v~  320 (348)
                      +.||.........-+-+.++.++
T Consensus       155 ~~gf~~~~~~~~~~~~~~~~~~~  177 (179)
T TIGR00537       155 ERGFRYEIVAERGLFFEELFAIK  177 (179)
T ss_pred             hCCCeEEEEEEeecCceEEEEEE
Confidence            99999777665544334444433

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.63  E-value=7e-17  Score=140.29  Aligned_cols=141  Identities=22%  Similarity=0.304  Sum_probs=106.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD  232 (348)
                      ..+-.++||+|||||..+..|... ...++|+|+|.+|++.|.++-           ..-...++++..|.  ..+.+||
T Consensus       123 ~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg-----------~YD~L~~Aea~~Fl~~~~~er~D  190 (287)
T COG4976         123 LGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG-----------LYDTLYVAEAVLFLEDLTQERFD  190 (287)
T ss_pred             CCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc-----------chHHHHHHHHHHHhhhccCCccc
Confidence            455679999999999999988644 446999999999999998762           12223334444332  2347899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc-cC-CCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI-AR-SGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~-~~-~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      +|++..|+.++.  ++..++--+...|+|||.|.++.-. .. .+|...+ ...+..+..++..+++..||+++..++..
T Consensus       191 Li~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~p-s~RyAH~~~YVr~~l~~~Gl~~i~~~~tt  267 (287)
T COG4976         191 LIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGP-SQRYAHSESYVRALLAASGLEVIAIEDTT  267 (287)
T ss_pred             chhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCCCCCeecch-hhhhccchHHHHHHHHhcCceEEEeeccc
Confidence            999999999999  8889999999999999999997422 21 2232222 33455688999999999999999976554

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.63  E-value=1.1e-14  Score=131.46  Aligned_cols=142  Identities=17%  Similarity=0.201  Sum_probs=108.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~I  234 (348)
                      .++.+|||||||+|.++..++..+. .++++|+++.+++.+++++...       ...+++...++.+++ ...+.||+|
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~fD~I  118 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALES-------GLKIDYRQTTAEELAAEHPGQFDVV  118 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHc-------CCceEEEecCHHHhhhhcCCCccEE
Confidence            4677999999999999998887655 5999999999999999876543       124677777777664 234789999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc----------ee-----cCCCCceecCHHHHHHHHHhc
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF----------VL-----DKEDRSITRSDFYFKELFSRC  299 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~----------~~-----d~~~~~~~~s~~~l~~l~~~a  299 (348)
                      ++..+++|++  +...+++.+.++|+|||.+++.........          ..     ........++.++|.++++++
T Consensus       119 i~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  196 (233)
T PRK05134        119 TCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQA  196 (233)
T ss_pred             EEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHC
Confidence            9999999998  678899999999999999998764321110          00     001111225788899999999


Q ss_pred             CCeEEEEe
Q 018970          300 GLHIYKSK  307 (348)
Q Consensus       300 Gf~~v~~~  307 (348)
                      ||+++...
T Consensus       197 Gf~~v~~~  204 (233)
T PRK05134        197 GLEVQDIT  204 (233)
T ss_pred             CCeEeeee
Confidence            99999764

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.63  E-value=1e-14  Score=131.26  Aligned_cols=145  Identities=15%  Similarity=0.189  Sum_probs=106.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||||||+|.++..++..+.. |+++|+|+.|++.|++++...+.     ..++++...|+..   .+++||+|+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~-v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~---~~~~fD~v~  132 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAK-VVASDISPQMVEEARERAPEAGL-----AGNITFEVGDLES---LLGRFDTVV  132 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEcCchh---ccCCcCEEE
Confidence            45679999999999999999877764 99999999999999998765432     2468888888543   247899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC------cee---cCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG------FVL---DKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~------~~~---d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      +..+++|+++++...+++.+.+.+++++.+.+........      ..+   +........+..++.++++++||++...
T Consensus       133 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  212 (230)
T PRK07580        133 CLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRT  212 (230)
T ss_pred             EcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEee
Confidence            9999999998888899999999876555444322100000      001   1111223358889999999999999887


Q ss_pred             eec
Q 018970          307 KDQ  309 (348)
Q Consensus       307 ~~~  309 (348)
                      ...
T Consensus       213 ~~~  215 (230)
T PRK07580        213 ERI  215 (230)
T ss_pred             eec
Confidence            654

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.62  E-value=7.8e-15  Score=133.98  Aligned_cols=143  Identities=21%  Similarity=0.229  Sum_probs=108.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHH---HHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA---RESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a---~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      -.+.+|||||||+|+++..++.+++..|+|+|+++...-..   ++.++.        ...+.+....+++++. .+.||
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~--------~~~~~~lplgvE~Lp~-~~~FD  184 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ--------DPPVFELPLGVEDLPN-LGAFD  184 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC--------CccEEEcCcchhhccc-cCCcC
Confidence            35679999999999999999999999999999998876553   333322        1223344457777776 58999


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc--ee------cC-CCCceecCHHHHHHHHHhcCCeE
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF--VL------DK-EDRSITRSDFYFKELFSRCGLHI  303 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~--~~------d~-~~~~~~~s~~~l~~l~~~aGf~~  303 (348)
                      +|+|.+||.|..  ++...|+.+.+.|+|||.+++-..+.....  ..      .. ....|..|...+..+++++||+.
T Consensus       185 tVF~MGVLYHrr--~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~  262 (315)
T PF08003_consen  185 TVFSMGVLYHRR--SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKD  262 (315)
T ss_pred             EEEEeeehhccC--CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCce
Confidence            999999999999  899999999999999999998654433221  11      11 12223459999999999999999


Q ss_pred             EEEeec
Q 018970          304 YKSKDQ  309 (348)
Q Consensus       304 v~~~~~  309 (348)
                      ++....
T Consensus       263 v~~v~~  268 (315)
T PF08003_consen  263 VRCVDV  268 (315)
T ss_pred             EEEecC
Confidence            986544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.62  E-value=3.7e-17  Score=127.76  Aligned_cols=95  Identities=27%  Similarity=0.431  Sum_probs=61.5

Q ss_pred             EEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc---CCCCCCCCCCceeEEeec
Q 018970          162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV---PLQDFTPETGRYDVIWVQ  237 (348)
Q Consensus       162 LDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~~~fD~Ii~~  237 (348)
                      ||||||+|.++..++..... +++++|+|+.|++.+++++.....      .+......   +....... ++||+|++.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~fD~V~~~   73 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFDYDPP-ESFDLVVAS   73 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS---CCC-----SEEEEE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhhcccc-cccceehhh
Confidence            79999999999999988543 799999999999888877654311      12223333   32222222 599999999


Q ss_pred             hhhhcCChhhHHHHHHHHHHcCCCCcEE
Q 018970          238 WCIGHLTDDDFVSFFKRAKVGLKPGGFF  265 (348)
Q Consensus       238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~l  265 (348)
                      .++||++  ++..++++++++|||||.|
T Consensus        74 ~vl~~l~--~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   74 NVLHHLE--DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred             hhHhhhh--hHHHHHHHHHHHcCCCCCC
Confidence            9999996  8899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.62  E-value=2.6e-15  Score=142.69  Aligned_cols=215  Identities=15%  Similarity=0.161  Sum_probs=139.8

Q ss_pred             CCcchhhhhhhhhhHhhhhhcccCCCCCCCCcccccccCCCCCCCcccCHHHHHHHhhcCCccchh-------hhhhHH-
Q 018970           35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQE-------KKTQWY-  106 (348)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~~~~~-------~~~~~y-  106 (348)
                      ..-.-++.+|+.|.+++..++.+++.-  +..+.+.+.|.+..|  -++...+.+.-.+.......       ....+- 
T Consensus        76 ~~d~~~~~~pk~k~~~~~~l~~~~~~l--~~g~~i~~~G~~~~g--~~s~~k~~~~~~~~~~~~~ar~~~l~~~~~~~~~  151 (342)
T PRK09489         76 DCDTLIYYWPKNKQEAQFQLMNLLSLL--PVGTDIFVVGENRSG--VRSAEKMLADYAPLNKIDSARRCGLYHGRLEKQP  151 (342)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHhC--CCCCEEEEEEecccc--HHHHHHHHHHhcCccccccceeEEEEEEeccccC
Confidence            344568999999999999998887732  236778899999999  24444544443321100000       000010 


Q ss_pred             -HhhhhccccccccccccccCccccccc-ChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cE
Q 018970          107 -REGISYWEGVEASVDGVLGGFGNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EV  183 (348)
Q Consensus       107 -~~~~~yW~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v  183 (348)
                       -+..+||...... +-.+...++++.. .+.....++...+..       ....+|||+|||+|.++..++.+.+. +|
T Consensus       152 ~~~~~~~~~~y~~~-~l~i~~~pgvFs~~~lD~gt~lLl~~l~~-------~~~g~VLDlGCG~G~ls~~la~~~p~~~v  223 (342)
T PRK09489        152 VFDADKFWKEYQVD-GLTVKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSAVLARHSPKIRL  223 (342)
T ss_pred             CCcccccceeeecC-CEEEEeCCCCCCCCCCCHHHHHHHHhccc-------cCCCeEEEeccCcCHHHHHHHHhCCCCEE
Confidence             1124455533210 1012223344444 334444555444432       23458999999999999999987664 79


Q ss_pred             EEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCCh---hhHHHHHHHHHHcCC
Q 018970          184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLK  260 (348)
Q Consensus       184 ~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~---~d~~~~l~~~~~~Lk  260 (348)
                      +++|+|+.|++.+++++...++       ...+...|..+..  .++||+|+++..+|+...   +....+++++.+.||
T Consensus       224 ~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lk  294 (342)
T PRK09489        224 TLSDVSAAALESSRATLAANGL-------EGEVFASNVFSDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLN  294 (342)
T ss_pred             EEEECCHHHHHHHHHHHHHcCC-------CCEEEEccccccc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcC
Confidence            9999999999999998876432       2456666765432  478999999999986432   356889999999999


Q ss_pred             CCcEEEEEec
Q 018970          261 PGGFFVLKEN  270 (348)
Q Consensus       261 pgG~lii~~~  270 (348)
                      |||.|++..+
T Consensus       295 pgG~L~iVan  304 (342)
T PRK09489        295 SGGELRIVAN  304 (342)
T ss_pred             cCCEEEEEEe
Confidence            9999999865

>PRK05785 hypothetical protein; Provisional

Probab=99.62  E-value=1.2e-15  Score=137.35  Aligned_cols=90  Identities=10%  Similarity=0.098  Sum_probs=78.8

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      ++.+|||||||+|.++..++.....+|+|+|+|++|++.|+++.              .+.++|++++++++++||+|++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~lp~~d~sfD~v~~  116 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------DKVVGSFEALPFRDKSFDVVMS  116 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------ceEEechhhCCCCCCCEEEEEe
Confidence            46799999999999999998774336999999999999997641              2467888999988899999999


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCC
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPG  262 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~Lkpg  262 (348)
                      ..+++|++  |+..++++++|+|||.
T Consensus       117 ~~~l~~~~--d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        117 SFALHASD--NIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             cChhhccC--CHHHHHHHHHHHhcCc
Confidence            99999998  7889999999999995

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.61  E-value=1.9e-14  Score=128.61  Aligned_cols=147  Identities=11%  Similarity=-0.040  Sum_probs=106.0

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCC------CCcCCCcceeEEEcCCCCCCCC-C
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH------MAPDMHKATNFFCVPLQDFTPE-T  228 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~------~~~~~~~~i~~~~~d~~~~~~~-~  228 (348)
                      .++.+|||+|||.|..+..|+++++. |+++|+|+.+++.+.+...-...      .......++++.++|+.++... .
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~  114 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL  114 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence            45679999999999999999998886 99999999999987542211000      0000135689999999988643 2


Q ss_pred             CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      +.||+|+...+++|++.+....+++.+.++|+|||.+++.........   .....+..+.+++.++|.. +|++....
T Consensus       115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~---~~gPp~~~~~~el~~~~~~-~~~i~~~~  189 (218)
T PRK13255        115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE---LAGPPFSVSDEEVEALYAG-CFEIELLE  189 (218)
T ss_pred             CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc---CCCCCCCCCHHHHHHHhcC-CceEEEee
Confidence            589999999999999988889999999999999996554322211111   0112245789999999964 36655544

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.61  E-value=3e-14  Score=124.19  Aligned_cols=124  Identities=21%  Similarity=0.203  Sum_probs=100.0

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +++.+|||+|||+|..+..++..... +|+++|+|+.|++.|++++...++      .++++...|+.++.. .++||+|
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~-~~~fDlV  116 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ-EEKFDVV  116 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC-CCCccEE
Confidence            44789999999999999988865443 799999999999999998876543      348999999988776 5799999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      +++.    +.  ++..+++.++++|||||.+++....               .....+.++.+..|+.+....
T Consensus       117 ~~~~----~~--~~~~~l~~~~~~LkpGG~lv~~~~~---------------~~~~~l~~~~~~~~~~~~~~~  168 (187)
T PRK00107        117 TSRA----VA--SLSDLVELCLPLLKPGGRFLALKGR---------------DPEEEIAELPKALGGKVEEVI  168 (187)
T ss_pred             EEcc----cc--CHHHHHHHHHHhcCCCeEEEEEeCC---------------ChHHHHHHHHHhcCceEeeeE
Confidence            9864    22  5778999999999999999988532               124457888888899976643

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.59  E-value=2.2e-14  Score=124.69  Aligned_cols=123  Identities=20%  Similarity=0.183  Sum_probs=94.6

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      +.+|||+|||+|.++..++..... .|+++|+|+.|++.++++....++      .++++.++|+.++.. .++||+|++
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~~~-~~~fD~I~s  115 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDFQH-EEQFDVITS  115 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhccc-cCCccEEEe
Confidence            679999999999999988766543 799999999999999988765432      358999999988753 478999998


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHh---cCCeEEEEee
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSR---CGLHIYKSKD  308 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~---aGf~~v~~~~  308 (348)
                      .. ++     ++..+++.+.++|+|||.+++....               ....++..+.++   .||+.++...
T Consensus       116 ~~-~~-----~~~~~~~~~~~~LkpgG~lvi~~~~---------------~~~~~~~~~~e~~~~~~~~~~~~~~  169 (181)
T TIGR00138       116 RA-LA-----SLNVLLELTLNLLKVGGYFLAYKGK---------------KYLDEIEEAKRKCQVLGVEPLEVPP  169 (181)
T ss_pred             hh-hh-----CHHHHHHHHHHhcCCCCEEEEEcCC---------------CcHHHHHHHHHhhhhcCceEeeccc
Confidence            76 43     4557889999999999999986421               123345555555   7999887654

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.59  E-value=8.4e-15  Score=123.15  Aligned_cols=129  Identities=16%  Similarity=0.260  Sum_probs=105.6

Q ss_pred             cEEEEeccccHHHHHHHHhCCCc-EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeech
Q 018970          160 VALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW  238 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la~~~~~~-v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~  238 (348)
                      +|||+|||+|.+...|++.+++. ++|+|.|+++++.|+..+...+.     ...|.|.+.|+.+-....+.||+|.--.
T Consensus        70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~-----~n~I~f~q~DI~~~~~~~~qfdlvlDKG  144 (227)
T KOG1271|consen   70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF-----SNEIRFQQLDITDPDFLSGQFDLVLDKG  144 (227)
T ss_pred             ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC-----CcceeEEEeeccCCcccccceeEEeecC
Confidence            99999999999999999998884 99999999999999998877655     3449999999988665568899998655


Q ss_pred             hhhcCC------hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          239 CIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       239 ~l~~~~------~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      ++..+.      ...+..++..+.++|+|||+|+|..               +.++.+++.+.|+..||++.....
T Consensus       145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS---------------CN~T~dELv~~f~~~~f~~~~tvp  205 (227)
T KOG1271|consen  145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS---------------CNFTKDELVEEFENFNFEYLSTVP  205 (227)
T ss_pred             ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe---------------cCccHHHHHHHHhcCCeEEEEeec
Confidence            544332      1335668899999999999999874               236788999999999999877553

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.59  E-value=1.2e-14  Score=133.69  Aligned_cols=114  Identities=19%  Similarity=0.307  Sum_probs=88.8

Q ss_pred             CCCCcEEEEeccccH----HHHHHHHhCC------CcEEEEcCCHHHHHHHHHHhCCC----CCC---------------
Q 018970          156 NQHLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPE----NHM---------------  206 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~----~~~~la~~~~------~~v~~vD~S~~~l~~a~~~~~~~----~~~---------------  206 (348)
                      .++.+|||+|||+|.    ++..+++.+.      .+|+|+|+|+.|++.|++.+-..    ++.               
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            456799999999996    4555554332      26999999999999999754110    000               


Q ss_pred             --CcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          207 --APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       207 --~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                        ......++.|.+.|+.+.+++.++||+|+|.++++|+++++...++++++++|+|||+|++..
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence              001124689999999998766689999999999999998788899999999999999999964

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.59  E-value=2.5e-14  Score=128.26  Aligned_cols=143  Identities=18%  Similarity=0.270  Sum_probs=109.6

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii  235 (348)
                      .+.+|||+|||+|.++..++..+. .++++|+|+.+++.+++++...+.      .++.+...|+.+++.. .++||+|+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~i~  117 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLAEKGAKSFDVVT  117 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhcCCCCCccEEE
Confidence            467999999999999998887666 499999999999999988765321      1578888888776543 37899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC-C---------cee---cCCC--CceecCHHHHHHHHHhcC
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS-G---------FVL---DKED--RSITRSDFYFKELFSRCG  300 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~-~---------~~~---d~~~--~~~~~s~~~l~~l~~~aG  300 (348)
                      +..+++|+.  ++..+++.+.++|+|||.+++....... .         +..   ....  ....++.+++.++++++|
T Consensus       118 ~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G  195 (224)
T TIGR01983       118 CMEVLEHVP--DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG  195 (224)
T ss_pred             ehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence            999999998  7789999999999999999987643211 0         000   0111  112247788999999999


Q ss_pred             CeEEEEee
Q 018970          301 LHIYKSKD  308 (348)
Q Consensus       301 f~~v~~~~  308 (348)
                      |++++...
T Consensus       196 ~~i~~~~~  203 (224)
T TIGR01983       196 LRVKDVKG  203 (224)
T ss_pred             Ceeeeeee
Confidence            99988653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.57  E-value=1.1e-14  Score=124.84  Aligned_cols=146  Identities=22%  Similarity=0.303  Sum_probs=109.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCccee-EEEcCCCCCC-CCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN-FFCVPLQDFT-PETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~fD~  233 (348)
                      .....|||||||||..-.++-..-...|+++|+++.|-+.+.+.+.+..      ..++. |..++.++++ .++++||+
T Consensus        75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k------~~~~~~fvva~ge~l~~l~d~s~Dt  148 (252)
T KOG4300|consen   75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK------PLQVERFVVADGENLPQLADGSYDT  148 (252)
T ss_pred             cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc------CcceEEEEeechhcCcccccCCeee
Confidence            3445689999999988765432223379999999999999998887642      23455 8889999988 67799999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC-Cc---ee----cC----CCCceecCHHHHHHHHHhcCC
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS-GF---VL----DK----EDRSITRSDFYFKELFSRCGL  301 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~-~~---~~----d~----~~~~~~~s~~~l~~l~~~aGf  301 (348)
                      |++..+|+-..  ++.+.|+++.++|+|||.+++.|+.... ++   ++    +.    .......+.+ ..+.++++-|
T Consensus       149 VV~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd-~~e~Leda~f  225 (252)
T KOG4300|consen  149 VVCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRD-TGELLEDAEF  225 (252)
T ss_pred             EEEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehh-HHHHhhhccc
Confidence            99999999888  8899999999999999999999877543 22   11    11    1122233443 5678889999


Q ss_pred             eEEEEeecC
Q 018970          302 HIYKSKDQK  310 (348)
Q Consensus       302 ~~v~~~~~~  310 (348)
                      ..+...+..
T Consensus       226 ~~~~~kr~~  234 (252)
T KOG4300|consen  226 SIDSCKRFN  234 (252)
T ss_pred             ccchhhccc
Confidence            988766543

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.6e-14  Score=132.05  Aligned_cols=217  Identities=19%  Similarity=0.175  Sum_probs=146.6

Q ss_pred             CCcchhhhhhhhhhHhhhhhcccCCCCCCCCcccccccCCCCCCCcccCHHHHHHHhhcCCcc--chhhhhhHHHh----
Q 018970           35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGE--QQEKKTQWYRE----  108 (348)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~~--~~~~~~~~y~~----  108 (348)
                      ....-|+.||+.|.+++..++.+.+.-  |..+.+.+.|.+.+|  ..+...|..+-.+....  ..+....||..    
T Consensus        37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~--~~g~~i~v~g~~~~g--~~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~  112 (300)
T COG2813          37 DFDAVLLYWPKHKAEAEFQLAQLLARL--PPGGEIVVVGEKRDG--VRSAEKMLEKYGGPTKTDSARHCMRLHYYSENPP  112 (300)
T ss_pred             CCCEEEEEccCchHHHHHHHHHHHhhC--CCCCeEEEEecccch--HHHHHHHHHHhcCccccchHhhcceeEeecCCCC
Confidence            455668899999999999988877744  124566678888888  44455555554433211  22222233321    


Q ss_pred             ---hhhccccccccccccccCccccccc-ChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cE
Q 018970          109 ---GISYWEGVEASVDGVLGGFGNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EV  183 (348)
Q Consensus       109 ---~~~yW~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v  183 (348)
                         ...+|.......+..+.+-+++++. .++...++|...+..       ....+|||+|||.|.++..+++..+. ++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~-------~~~~~vlDlGCG~Gvlg~~la~~~p~~~v  185 (300)
T COG2813         113 PFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPP-------DLGGKVLDLGCGYGVLGLVLAKKSPQAKL  185 (300)
T ss_pred             cccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCc-------cCCCcEEEeCCCccHHHHHHHHhCCCCeE
Confidence               1334443332333344445566665 566677777776653       34459999999999999999988875 89


Q ss_pred             EEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhh---HHHHHHHHHHcCC
Q 018970          184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD---FVSFFKRAKVGLK  260 (348)
Q Consensus       184 ~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d---~~~~l~~~~~~Lk  260 (348)
                      +.+|+|..+++.|++++...+.      .+..+...|+.+- .+ ++||+|+|+..||--..-.   ...+++...+.|+
T Consensus       186 tmvDvn~~Av~~ar~Nl~~N~~------~~~~v~~s~~~~~-v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~  257 (300)
T COG2813         186 TLVDVNARAVESARKNLAANGV------ENTEVWASNLYEP-VE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLK  257 (300)
T ss_pred             EEEecCHHHHHHHHHhHHHcCC------CccEEEEeccccc-cc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhc
Confidence            9999999999999999876433      2223444454332 22 4899999999999654311   3479999999999


Q ss_pred             CCcEEEEEec
Q 018970          261 PGGFFVLKEN  270 (348)
Q Consensus       261 pgG~lii~~~  270 (348)
                      +||.|.|..+
T Consensus       258 ~gGeL~iVan  267 (300)
T COG2813         258 PGGELWIVAN  267 (300)
T ss_pred             cCCEEEEEEc
Confidence            9999999876

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.56  E-value=7.7e-15  Score=126.70  Aligned_cols=162  Identities=20%  Similarity=0.245  Sum_probs=121.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..+..+|.|+|||+|..+..|+++.+. .++|+|.|++|++.|+++.           .+++|..+|+.+|.++ ...|+
T Consensus        28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~w~p~-~~~dl   95 (257)
T COG4106          28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRTWKPE-QPTDL   95 (257)
T ss_pred             ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhhcCCC-Cccch
Confidence            567789999999999999999998877 8999999999999998885           4589999999999876 68999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe--cccCCCc----------eecC------CCCceecCHHHHHHH
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE--NIARSGF----------VLDK------EDRSITRSDFYFKEL  295 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~--~~~~~~~----------~~d~------~~~~~~~s~~~l~~l  295 (348)
                      ++++.+|+.++  |-..+|.++...|.|||+|.+.-  |..+...          .+..      .......+...+.++
T Consensus        96 lfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~l  173 (257)
T COG4106          96 LFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYEL  173 (257)
T ss_pred             hhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHH
Confidence            99999999999  66789999999999999999963  2211110          0100      012233578888999


Q ss_pred             HHhcCCeEEEEeecCC--CCc---cceEEEEEEEeecCCC
Q 018970          296 FSRCGLHIYKSKDQKG--LPE---ELFAVKMYALTAEMPR  330 (348)
Q Consensus       296 ~~~aGf~~v~~~~~~~--~~~---~l~~v~~~~l~~~~~~  330 (348)
                      +...+-++.-+...+.  .+.   ..-=++.-+|+|+...
T Consensus       174 La~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~  213 (257)
T COG4106         174 LAPLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPYLDR  213 (257)
T ss_pred             hCcccceeeeeeeeccccCCCccchhhheeccccceeccc
Confidence            9988877665554332  222   1123455677776543

>PRK06922 hypothetical protein; Provisional

Probab=99.56  E-value=2.6e-14  Score=143.12  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=90.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCcee
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD  232 (348)
                      .++.+|||+|||+|.++..++...+. .|+|+|+|+.|++.|+++....       ..++.+.++|+.+++  +++++||
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-------g~~ie~I~gDa~dLp~~fedeSFD  489 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-------GRSWNVIKGDAINLSSSFEKESVD  489 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-------CCCeEEEEcchHhCccccCCCCEE
Confidence            35679999999999999888876544 8999999999999999876542       235778888988876  5668999


Q ss_pred             EEeechhhhcCC-----------hhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          233 VIWVQWCIGHLT-----------DDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       233 ~Ii~~~~l~~~~-----------~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      +|+++.++|++.           .+++..++++++++|||||.+++.+..
T Consensus       490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v  539 (677)
T PRK06922        490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI  539 (677)
T ss_pred             EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            999999998752           357889999999999999999998753

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.56  E-value=1e-13  Score=121.12  Aligned_cols=125  Identities=16%  Similarity=0.228  Sum_probs=96.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      +.++.+|||+|||+|.++..++..++. +|+++|+|+.+++.|++++...++      .++++.+.|... .. .++||+
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------~~i~~~~~d~~~-~~-~~~~D~  100 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------GNIDIIPGEAPI-EL-PGKADA  100 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCeEEEecCchh-hc-CcCCCE
Confidence            456789999999999999999877654 799999999999999988765432      357888887642 22 268999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      |++....+     .+..+++.+.++|+|||.+++.....              -+.+++.+++++.||+.++.
T Consensus       101 v~~~~~~~-----~~~~~l~~~~~~Lk~gG~lv~~~~~~--------------~~~~~~~~~l~~~g~~~~~~  154 (187)
T PRK08287        101 IFIGGSGG-----NLTAIIDWSLAHLHPGGRLVLTFILL--------------ENLHSALAHLEKCGVSELDC  154 (187)
T ss_pred             EEECCCcc-----CHHHHHHHHHHhcCCCeEEEEEEecH--------------hhHHHHHHHHHHCCCCcceE
Confidence            99976544     35578999999999999998864211              23467888999999976663

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.55  E-value=1.2e-13  Score=121.53  Aligned_cols=137  Identities=12%  Similarity=-0.019  Sum_probs=97.7

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CC-CCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~fD~  233 (348)
                      +++.+|||+|||+|.++..++......++++|+|+.|++.++++             ++++...|+.+ ++ .++++||+
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~~l~~~~~~sfD~   78 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDEGLEAFPDKSFDY   78 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhhcccccCCCCcCE
Confidence            45679999999999999988765444689999999999988642             25677777765 32 44578999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc----------CCC-c--------eecCCCCceecCHHHHHH
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA----------RSG-F--------VLDKEDRSITRSDFYFKE  294 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~----------~~~-~--------~~d~~~~~~~~s~~~l~~  294 (348)
                      |+++.+++|++  ++..+++++.+.+++   +++..+..          ..+ .        .+-........+.+++.+
T Consensus        79 Vi~~~~l~~~~--d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  153 (194)
T TIGR02081        79 VILSQTLQATR--NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFED  153 (194)
T ss_pred             EEEhhHhHcCc--CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHH
Confidence            99999999998  778999999887664   33321110          000 0        000011112358999999


Q ss_pred             HHHhcCCeEEEEeecC
Q 018970          295 LFSRCGLHIYKSKDQK  310 (348)
Q Consensus       295 l~~~aGf~~v~~~~~~  310 (348)
                      +++++||++++.....
T Consensus       154 ll~~~Gf~v~~~~~~~  169 (194)
T TIGR02081       154 LCGELNLRILDRAAFD  169 (194)
T ss_pred             HHHHCCCEEEEEEEec
Confidence            9999999999866553

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK04266 fibrillarin; Provisional

Probab=99.55  E-value=1.6e-13  Score=123.13  Aligned_cols=144  Identities=14%  Similarity=0.056  Sum_probs=101.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC----CCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~  229 (348)
                      +.++.+|||+|||+|.++..++.... ..|+++|+|+.|++.+.+++..        ..++.+..+|+.+.    +.. +
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--------~~nv~~i~~D~~~~~~~~~l~-~  140 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--------RKNIIPILADARKPERYAHVV-E  140 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--------cCCcEEEECCCCCcchhhhcc-c
Confidence            67888999999999999999987643 3699999999999988777654        24678888887642    122 5


Q ss_pred             ceeEEeechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          230 RYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      +||+|++.     +.+ .....+++++.++|||||.|++.-....    .|......... +...++++++||++++...
T Consensus       141 ~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~----~d~~~~~~~~~-~~~~~~l~~aGF~~i~~~~  210 (226)
T PRK04266        141 KVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS----IDVTKDPKEIF-KEEIRKLEEGGFEILEVVD  210 (226)
T ss_pred             cCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccc----ccCcCCHHHHH-HHHHHHHHHcCCeEEEEEc
Confidence            69999853     222 1234578999999999999999522111    11111111112 3456999999999999888


Q ss_pred             cCCCCccce
Q 018970          309 QKGLPEELF  317 (348)
Q Consensus       309 ~~~~~~~l~  317 (348)
                      ...+..+.|
T Consensus       211 l~p~~~~h~  219 (226)
T PRK04266        211 LEPYHKDHA  219 (226)
T ss_pred             CCCCcCCeE
Confidence            776655543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.54  E-value=2.8e-14  Score=126.25  Aligned_cols=128  Identities=16%  Similarity=0.140  Sum_probs=96.9

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC-CCCC--CCCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT--PETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~fD  232 (348)
                      ++.+|||+|||+|.++..++...+. .|+++|+|+.|++.|++++...++      .++.+.+.|+ +.++  .++++||
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~D  113 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLLDMFPDGSLD  113 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHHHHcCccccc
Confidence            4578999999999999999877543 799999999999999988765322      4688999998 6655  4567899


Q ss_pred             EEeechhhhcCC------hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          233 VIWVQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       233 ~Ii~~~~l~~~~------~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      +|+++....+..      ......+++++.++|||||.|++.....              .-..++.+.++..|+.+.
T Consensus       114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--------------~~~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--------------GYAEYMLEVLSAEGGFLV  177 (202)
T ss_pred             eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--------------HHHHHHHHHHHhCccccc
Confidence            999876543221      1124679999999999999999975321              112357778888898755

>TIGR03438 probable methyltransferase

Probab=99.54  E-value=3e-13  Score=126.88  Aligned_cols=107  Identities=21%  Similarity=0.252  Sum_probs=84.0

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CCCCC---
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG---  229 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~---  229 (348)
                      .++.+|||+|||+|..+..|++...  ..|+++|+|+.|++.+++++....     ...++.++++|+.+. +....   
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-----p~~~v~~i~gD~~~~~~~~~~~~~  136 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-----PQLEVHGICADFTQPLALPPEPAA  136 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-----CCceEEEEEEcccchhhhhccccc
Confidence            4567899999999999999998753  369999999999999988865421     023567788998763 32211   


Q ss_pred             -ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970          230 -RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       230 -~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                       ...++++..+++++++++...+|++++++|+|||.|++
T Consensus       137 ~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       137 GRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             CCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence             33455666789999988899999999999999999996

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.53  E-value=1.8e-13  Score=110.66  Aligned_cols=104  Identities=18%  Similarity=0.098  Sum_probs=82.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD  232 (348)
                      +.++.+|||+|||+|.++..++...+. .|+++|+|+.+++.+++++...+.      .++++...|+... +...++||
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~D   90 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------SNIVIVEGDAPEALEDSLPEPD   90 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEeccccccChhhcCCCC
Confidence            455679999999999999999977543 799999999999999988765432      3577888877652 22236899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++....+     ....+++.+.+.|||||.|++.-
T Consensus        91 ~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        91 RVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             EEEECCcch-----hHHHHHHHHHHHcCCCCEEEEEe
Confidence            999976544     45689999999999999999863

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.52  E-value=1.9e-13  Score=124.89  Aligned_cols=123  Identities=17%  Similarity=0.129  Sum_probs=93.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+...|+++|+|+.+++.|++++...++     ...+.+...        +.+||+|+
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~-----~~~~~~~~~--------~~~fD~Vv  184 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV-----ELNVYLPQG--------DLKADVIV  184 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CceEEEccC--------CCCcCEEE
Confidence            46789999999999999987766665799999999999999998865432     112222221        12799999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      ++...+     .+..+++++.++|||||.++++....              ...+.+.+.+++.||+++......
T Consensus       185 ani~~~-----~~~~l~~~~~~~LkpgG~lilsgi~~--------------~~~~~v~~~l~~~Gf~~~~~~~~~  240 (250)
T PRK00517        185 ANILAN-----PLLELAPDLARLLKPGGRLILSGILE--------------EQADEVLEAYEEAGFTLDEVLERG  240 (250)
T ss_pred             EcCcHH-----HHHHHHHHHHHhcCCCcEEEEEECcH--------------hhHHHHHHHHHHCCCEEEEEEEeC
Confidence            875432     45678999999999999999986432              235678899999999998876654

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.52  E-value=1.7e-13  Score=118.04  Aligned_cols=122  Identities=23%  Similarity=0.254  Sum_probs=95.0

Q ss_pred             ChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCc
Q 018970          134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHK  212 (348)
Q Consensus       134 ~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~  212 (348)
                      .+.....+|.+.+...       +..+|||+|||+|.++..++..++. .|+++|+|+.+++.+++++...++     . 
T Consensus        15 ~~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~-   81 (170)
T PF05175_consen   15 RLDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL-----E-   81 (170)
T ss_dssp             SHHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC-----T-
T ss_pred             CCCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc-----c-
Confidence            3555566777766542       5578999999999999999988776 799999999999999999876543     2 


Q ss_pred             ceeEEEcCCCCCCCCCCceeEEeechhhhcCCh---hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       213 ~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~---~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ++++...|+.+... .++||+|+++..++.-.+   +-...+++.+.+.|||||.+++..
T Consensus        82 ~v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~  140 (170)
T PF05175_consen   82 NVEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI  140 (170)
T ss_dssp             TEEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence            28888888876443 479999999998876653   236789999999999999997754

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.50  E-value=3.8e-13  Score=125.48  Aligned_cols=129  Identities=14%  Similarity=0.168  Sum_probs=96.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+...|+++|+|+.+++.|++++...++     ...+.+...+....  ..++||+|+
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~-----~~~~~~~~~~~~~~--~~~~fDlVv  230 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV-----SDRLQVKLIYLEQP--IEGKADVIV  230 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEecccccc--cCCCceEEE
Confidence            35689999999999999988876666899999999999999998875433     23355555553322  246899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCC
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKG  311 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~  311 (348)
                      ++...+     .+..++.++.++|||||.|+++....              ...+.+.+.+++. |+++.......
T Consensus       231 an~~~~-----~l~~ll~~~~~~LkpgG~li~sgi~~--------------~~~~~v~~~~~~~-f~~~~~~~~~~  286 (288)
T TIGR00406       231 ANILAE-----VIKELYPQFSRLVKPGGWLILSGILE--------------TQAQSVCDAYEQG-FTVVEIRQREE  286 (288)
T ss_pred             EecCHH-----HHHHHHHHHHHHcCCCcEEEEEeCcH--------------hHHHHHHHHHHcc-CceeeEeccCC
Confidence            976543     45689999999999999999986432              2345677888776 98887665543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.50  E-value=5.9e-13  Score=118.81  Aligned_cols=166  Identities=19%  Similarity=0.200  Sum_probs=116.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC-CCCCCc-----CCCcceeEEEcCCCCCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP-ENHMAP-----DMHKATNFFCVPLQDFTPET  228 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~-~~~~~~-----~~~~~i~~~~~d~~~~~~~~  228 (348)
                      ..++.+||..|||.|.....|++++++ |+|+|+|+.+++.+.+.... ......     ....++++.++|+.+++...
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~  113 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQGHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED  113 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHTTEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHCCCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence            466779999999999999999999885 99999999999998543321 000000     11246899999999987543


Q ss_pred             -CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          229 -GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       229 -~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                       ++||+|+-..+|+.++++...++.+.+.++|+|||.+++.......   .+.....+..+.+++.++|. .+|++....
T Consensus       114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~---~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~  189 (218)
T PF05724_consen  114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQ---GEMEGPPFSVTEEEVRELFG-PGFEIEELE  189 (218)
T ss_dssp             HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-C---SCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred             cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC---cCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence             5899999999999999999999999999999999994443221110   11123345578899999999 799988866


Q ss_pred             ecCCCCc---------cceEEEEEEEe
Q 018970          308 DQKGLPE---------ELFAVKMYALT  325 (348)
Q Consensus       308 ~~~~~~~---------~l~~v~~~~l~  325 (348)
                      .....+.         ..+..+.|.|+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~e~~~~l~  216 (218)
T PF05724_consen  190 EEDSIEEEPRFKSWGLSRFREKVYVLR  216 (218)
T ss_dssp             EEE-TTT-HHHHCCT-SS-EEEEEEEE
T ss_pred             cccccccccchhhcCcCceeEEEEEEE
Confidence            5433322         56788888876

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.49  E-value=4.1e-13  Score=128.73  Aligned_cols=132  Identities=19%  Similarity=0.169  Sum_probs=97.3

Q ss_pred             cccccc-ChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCC
Q 018970          128 GNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENH  205 (348)
Q Consensus       128 ~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~  205 (348)
                      +++|.. .++...+++...+..       ....+|||+|||+|.++..++.+++. +|+++|+|+.|++.|++++...+.
T Consensus       205 ~gVFs~~~LD~GtrllL~~lp~-------~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~  277 (378)
T PRK15001        205 ANVFSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP  277 (378)
T ss_pred             CCccCCCCcChHHHHHHHhCCc-------ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence            445554 355556666655532       23468999999999999999988765 899999999999999998754321


Q ss_pred             CCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcC---ChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          206 MAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       206 ~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~---~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      .   ...++++...|..+.. +.++||+|+++..+|..   ++.....+++.+.++|+|||.|++..+
T Consensus       278 ~---~~~~v~~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        278 E---ALDRCEFMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             c---cCceEEEEEccccccC-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            0   0135788888775432 23589999999888754   333456899999999999999999863

>PTZ00146 fibrillarin; Provisional

Probab=99.48  E-value=2.5e-12  Score=118.32  Aligned_cols=145  Identities=13%  Similarity=-0.018  Sum_probs=100.8

Q ss_pred             cCCccCCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC---
Q 018970          150 FPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---  224 (348)
Q Consensus       150 l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~---  224 (348)
                      +....+.++.+|||+|||+|.++..++....  ..|+++|+|+.|++...+.+..        ..|+.++..|+...   
T Consensus       125 ~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--------r~NI~~I~~Da~~p~~y  196 (293)
T PTZ00146        125 VANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--------RPNIVPIIEDARYPQKY  196 (293)
T ss_pred             cceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCCEEEECCccChhhh
Confidence            3334478889999999999999999997743  2799999999876555554432        24678888887542   


Q ss_pred             CCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHH----HHHHHhcC
Q 018970          225 TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYF----KELFSRCG  300 (348)
Q Consensus       225 ~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l----~~l~~~aG  300 (348)
                      ....++||+|++....   + ++...++.++.++|||||.|+|......         .....+.+++    .+.|+++|
T Consensus       197 ~~~~~~vDvV~~Dva~---p-dq~~il~~na~r~LKpGG~~vI~ika~~---------id~g~~pe~~f~~ev~~L~~~G  263 (293)
T PTZ00146        197 RMLVPMVDVIFADVAQ---P-DQARIVALNAQYFLKNGGHFIISIKANC---------IDSTAKPEVVFASEVQKLKKEG  263 (293)
T ss_pred             hcccCCCCEEEEeCCC---c-chHHHHHHHHHHhccCCCEEEEEEeccc---------cccCCCHHHHHHHHHHHHHHcC
Confidence            1123579999987641   2 2556777899999999999999532111         1111223332    37899999


Q ss_pred             CeEEEEeecCCCCcc
Q 018970          301 LHIYKSKDQKGLPEE  315 (348)
Q Consensus       301 f~~v~~~~~~~~~~~  315 (348)
                      |++++......+...
T Consensus       264 F~~~e~v~L~Py~~~  278 (293)
T PTZ00146        264 LKPKEQLTLEPFERD  278 (293)
T ss_pred             CceEEEEecCCccCC
Confidence            999998887766554

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.48  E-value=3.6e-13  Score=119.47  Aligned_cols=102  Identities=16%  Similarity=0.117  Sum_probs=82.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+|||+|..+..++....  ..|+++|+++.+++.|++++...++     ..++++..+|+.+.....++||
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----~~~v~~~~~d~~~~~~~~~~fD  144 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----WGVVEVYHGDGKRGLEKHAPFD  144 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEEECCcccCCccCCCcc
Confidence            46778999999999999988876532  3799999999999999998876443     2358899999877544457899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++..++++++        +++.+.|+|||.|++..
T Consensus       145 ~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        145 AIIVTAAASTIP--------SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             EEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence            999999888766        35778999999998854

>PRK14967 putative methyltransferase; Provisional

Probab=99.46  E-value=1.3e-12  Score=117.39  Aligned_cols=107  Identities=15%  Similarity=0.048  Sum_probs=82.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++...+       .++.+...|+.+.. .+++||+|
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~-------~~~~~~~~d~~~~~-~~~~fD~V  105 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG-------VDVDVRRGDWARAV-EFRPFDVV  105 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC-------CeeEEEECchhhhc-cCCCeeEE
Confidence            45667999999999999998887655579999999999999998875432       24778888886643 34689999


Q ss_pred             eechhhhcCCh-------------------hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          235 WVQWCIGHLTD-------------------DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       235 i~~~~l~~~~~-------------------~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +++..+.....                   ..+..+++++.++|||||.+++..
T Consensus       106 i~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~  159 (223)
T PRK14967        106 VSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ  159 (223)
T ss_pred             EECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            99865433211                   125678899999999999999864

>PLN03075 nicotianamine synthase; Provisional

Probab=99.46  E-value=4.2e-13  Score=123.85  Aligned_cols=108  Identities=18%  Similarity=0.229  Sum_probs=88.7

Q ss_pred             CCCCcEEEEeccccHHHHHHHH-hC-CC-cEEEEcCCHHHHHHHHHHhCC-CCCCCcCCCcceeEEEcCCCCCCCCCCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLI-RY-FN-EVDLLEPVSHFLDAARESLAP-ENHMAPDMHKATNFFCVPLQDFTPETGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~-~~-~~-~v~~vD~S~~~l~~a~~~~~~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  231 (348)
                      .++.+|+|||||.|.++..++. .. +. .++++|+++++++.|++.+.. .++     ..+++|...|+.+.....+.|
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~~rV~F~~~Da~~~~~~l~~F  196 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----SKRMFFHTADVMDVTESLKEY  196 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----cCCcEEEECchhhcccccCCc
Confidence            3668999999998866554443 33 33 699999999999999999853 333     567999999998865334789


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |+|++. +++++..++...+++++.+.|+|||.+++..
T Consensus       197 DlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        197 DVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             CEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            999999 9999976688999999999999999999976

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.45  E-value=2.3e-12  Score=110.85  Aligned_cols=138  Identities=11%  Similarity=-0.011  Sum_probs=103.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CC-CCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~fD  232 (348)
                      +.++.+|||+|||.|.+..+|.+.......|+|++++.+..+.++             .+.++++|+++ +. +++++||
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~f~d~sFD   77 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLADFPDQSFD   77 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhhCCCCCcc
Confidence            467899999999999999998875444699999999998877654             36688888876 32 6789999


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC-------------------CceecCCCCceecCHHHHH
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS-------------------GFVLDKEDRSITRSDFYFK  293 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~-------------------~~~~d~~~~~~~~s~~~l~  293 (348)
                      .||++.+|.++.  ++..+|+++.|+   |...+++-+....                   ++.+-...+....|..+++
T Consensus        78 ~VIlsqtLQ~~~--~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe  152 (193)
T PF07021_consen   78 YVILSQTLQAVR--RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFE  152 (193)
T ss_pred             EEehHhHHHhHh--HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHH
Confidence            999999999999  788999999776   5566665422110                   1111111222235889999


Q ss_pred             HHHHhcCCeEEEEeecC
Q 018970          294 ELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       294 ~l~~~aGf~~v~~~~~~  310 (348)
                      ++.++.|+++++.....
T Consensus       153 ~lc~~~~i~I~~~~~~~  169 (193)
T PF07021_consen  153 DLCRELGIRIEERVFLD  169 (193)
T ss_pred             HHHHHCCCEEEEEEEEc
Confidence            99999999999966543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=1.8e-12  Score=119.35  Aligned_cols=132  Identities=19%  Similarity=0.195  Sum_probs=101.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.+++..+.-+...|.|+|++|-+++.|++++..+++..     .+.....+....+. .++||+|+
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~-----~~~~~~~~~~~~~~-~~~~DvIV  234 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL-----LVQAKGFLLLEVPE-NGPFDVIV  234 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch-----hhhcccccchhhcc-cCcccEEE
Confidence            4778999999999999999998888899999999999999999987654421     12222333333332 26899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCC
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGL  312 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~  312 (348)
                      +|-.-+     -+..+...+.+.|||||+++++....              ...+.+.+.+++.||+++......++
T Consensus       235 ANILA~-----vl~~La~~~~~~lkpgg~lIlSGIl~--------------~q~~~V~~a~~~~gf~v~~~~~~~eW  292 (300)
T COG2264         235 ANILAE-----VLVELAPDIKRLLKPGGRLILSGILE--------------DQAESVAEAYEQAGFEVVEVLEREEW  292 (300)
T ss_pred             ehhhHH-----HHHHHHHHHHHHcCCCceEEEEeehH--------------hHHHHHHHHHHhCCCeEeEEEecCCE
Confidence            976322     46689999999999999999997432              22456889999999999998877544

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.45  E-value=3.9e-13  Score=118.23  Aligned_cols=107  Identities=17%  Similarity=0.189  Sum_probs=84.4

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD  232 (348)
                      ...+|||||||+|.++..++.+.+. .|+++|+|+.|++.|++++...++      .++.+.++|+.++.   .+++++|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFPDGSLS   89 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCCCCcee
Confidence            3458999999999999999988765 799999999999999988765433      37899999987643   3346899


Q ss_pred             EEeechhhhcCChh------hHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~------d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .|+++....+....      ....+++.+.++|||||.|++..
T Consensus        90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t  132 (194)
T TIGR00091        90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT  132 (194)
T ss_pred             EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence            99987654432210      02579999999999999999875

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.45  E-value=9.1e-13  Score=121.96  Aligned_cols=95  Identities=17%  Similarity=0.132  Sum_probs=78.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC----cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~----~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      ...+|||+|||+|.++..++.....    .++|+|+|+.|++.|+++.           .++.+..+|+.++++++++||
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sfD  153 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSLD  153 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCcee
Confidence            4568999999999999998866432    5899999999999998764           347889999999888888999


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      +|++...    +     ..++++.++|||||.|++....
T Consensus       154 ~I~~~~~----~-----~~~~e~~rvLkpgG~li~~~p~  183 (272)
T PRK11088        154 AIIRIYA----P-----CKAEELARVVKPGGIVITVTPG  183 (272)
T ss_pred             EEEEecC----C-----CCHHHHHhhccCCCEEEEEeCC
Confidence            9998654    2     2357899999999999997644

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.44  E-value=3e-12  Score=114.32  Aligned_cols=145  Identities=10%  Similarity=-0.038  Sum_probs=108.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCC------CCCCcCCCcceeEEEcCCCCCCCC--
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE------NHMAPDMHKATNFFCVPLQDFTPE--  227 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~------~~~~~~~~~~i~~~~~d~~~~~~~--  227 (348)
                      .++.+||+.|||.|..+.+|+.+++. |+|+|+|+..++.+.+...-.      +-........+++.++|+.+++..  
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~  120 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN  120 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence            45679999999999999999999997 999999999999986632110      000001135799999999998642  


Q ss_pred             -CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhc-CCeEEE
Q 018970          228 -TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRC-GLHIYK  305 (348)
Q Consensus       228 -~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~a-Gf~~v~  305 (348)
                       .+.||+|+-..+|++++++....+.+.+.++|+|||.+++......    .....-.+..+.+++.+++... .++.+.
T Consensus       121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~----~~~~GPPf~v~~~e~~~lf~~~~~i~~l~  196 (226)
T PRK13256        121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD----KKSQTPPYSVTQAELIKNFSAKIKFELID  196 (226)
T ss_pred             ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC----CCCCCCCCcCCHHHHHHhccCCceEEEee
Confidence             2689999999999999998899999999999999999888753211    0012223445788899999752 455544

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.44  E-value=2.8e-12  Score=115.18  Aligned_cols=140  Identities=16%  Similarity=0.094  Sum_probs=110.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--CCCcee
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~fD  232 (348)
                      ....+|||+|||+|.++..++++.. ..+++||+++.|.+.|++++.-.++     ..++++++.|+.++..  ...+||
T Consensus        43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l-----~~ri~v~~~Di~~~~~~~~~~~fD  117 (248)
T COG4123          43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL-----EERIQVIEADIKEFLKALVFASFD  117 (248)
T ss_pred             ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-----hhceeEehhhHHHhhhcccccccC
Confidence            3478999999999999999998744 4899999999999999999876544     6789999999999762  335799


Q ss_pred             EEeechhhhcCCh----------------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHH
Q 018970          233 VIWVQWCIGHLTD----------------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELF  296 (348)
Q Consensus       233 ~Ii~~~~l~~~~~----------------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~  296 (348)
                      +|+|+..+.-...                -+++.+++.+..+|||||.+.+.-..               -...++.+++
T Consensus       118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------------erl~ei~~~l  182 (248)
T COG4123         118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------------ERLAEIIELL  182 (248)
T ss_pred             EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---------------HHHHHHHHHH
Confidence            9999866543322                24788999999999999999987522               1234578889


Q ss_pred             HhcCCeEEEEeecCCCCcc
Q 018970          297 SRCGLHIYKSKDQKGLPEE  315 (348)
Q Consensus       297 ~~aGf~~v~~~~~~~~~~~  315 (348)
                      .+.+|.........+.+..
T Consensus       183 ~~~~~~~k~i~~V~p~~~k  201 (248)
T COG4123         183 KSYNLEPKRIQFVYPKIGK  201 (248)
T ss_pred             HhcCCCceEEEEecCCCCC
Confidence            9989988877666655443

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.44  E-value=3.1e-12  Score=112.84  Aligned_cols=125  Identities=12%  Similarity=0.123  Sum_probs=94.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f  231 (348)
                      +.++.+|||+|||+|.++..++... . .+|+++|+|+.|++.+++++...++     ..++.+...|+.++. ...+.|
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----~~~v~~~~~d~~~~l~~~~~~~  112 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----LNNIVLIKGEAPEILFTINEKF  112 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCCeEEEEechhhhHhhcCCCC
Confidence            6778899999999999999887653 2 3799999999999999998766432     246788888887642 223689


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeE
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHI  303 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~  303 (348)
                      |+|++...   .  .++..+++.+.++|||||.+++.....              -+...+.+.+++.||..
T Consensus       113 D~V~~~~~---~--~~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~~~~~~~~l~~~g~~~  165 (198)
T PRK00377        113 DRIFIGGG---S--EKLKEIISASWEIIKKGGRIVIDAILL--------------ETVNNALSALENIGFNL  165 (198)
T ss_pred             CEEEECCC---c--ccHHHHHHHHHHHcCCCcEEEEEeecH--------------HHHHHHHHHHHHcCCCe
Confidence            99998542   1  267789999999999999998743211              12456788889999853

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.43  E-value=4.8e-12  Score=115.35  Aligned_cols=131  Identities=22%  Similarity=0.261  Sum_probs=99.0

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .+.+|||+|||+|.++..++..... .++++|+|+.+++.+++++...++      .++.+...|+.+. .+.++||+|+
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~-~~~~~fD~Vi  159 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFEP-LPGGKFDLIV  159 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhcc-CcCCceeEEE
Confidence            3458999999999999999977544 799999999999999998765433      3588999998663 3347899999


Q ss_pred             echhhhc------CCh------------------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970          236 VQWCIGH------LTD------------------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY  291 (348)
Q Consensus       236 ~~~~l~~------~~~------------------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~  291 (348)
                      ++..+..      +..                  .....+++++.++|+|||.+++....               ...+.
T Consensus       160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---------------~~~~~  224 (251)
T TIGR03534       160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---------------DQGEA  224 (251)
T ss_pred             ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---------------cHHHH
Confidence            8654332      111                  11347899999999999999885321               23456


Q ss_pred             HHHHHHhcCCeEEEEeec
Q 018970          292 FKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       292 l~~l~~~aGf~~v~~~~~  309 (348)
                      +.++++++||+.+.....
T Consensus       225 ~~~~l~~~gf~~v~~~~d  242 (251)
T TIGR03534       225 VRALFEAAGFADVETRKD  242 (251)
T ss_pred             HHHHHHhCCCCceEEEeC
Confidence            899999999987776543

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.43  E-value=2.3e-12  Score=115.40  Aligned_cols=142  Identities=18%  Similarity=0.232  Sum_probs=105.6

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      ...++||||+|.|.++..++ ..+++|++.|.|+.|....+++               .|...+..++...+.+||+|.|
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~k---------------g~~vl~~~~w~~~~~~fDvIsc  157 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKK---------------GFTVLDIDDWQQTDFKFDVISC  157 (265)
T ss_pred             cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhC---------------CCeEEehhhhhccCCceEEEee
Confidence            45689999999999999987 5666799999999998777653               1233455556545578999999


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC-------------CCCceecCHHHHHHHHHhcCCeE
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK-------------EDRSITRSDFYFKELFSRCGLHI  303 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~-------------~~~~~~~s~~~l~~l~~~aGf~~  303 (348)
                      .++|....  ++..+|+.+++.|+|+|.++++-..+-.+|+...             ....+--....+.+.|+.+||++
T Consensus       158 LNvLDRc~--~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v  235 (265)
T PF05219_consen  158 LNVLDRCD--RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEV  235 (265)
T ss_pred             hhhhhccC--CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEE
Confidence            99999887  8899999999999999999997544333332211             11111112233458999999999


Q ss_pred             EEEeecCCCCccc
Q 018970          304 YKSKDQKGLPEEL  316 (348)
Q Consensus       304 v~~~~~~~~~~~l  316 (348)
                      +.+.+.+.+++..
T Consensus       236 ~~~tr~PYLcEGD  248 (265)
T PF05219_consen  236 ERWTRLPYLCEGD  248 (265)
T ss_pred             EEEeccCccccCc
Confidence            9999988877643

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.43  E-value=2.3e-12  Score=112.33  Aligned_cols=148  Identities=17%  Similarity=0.130  Sum_probs=112.0

Q ss_pred             cEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--CC------CCCc
Q 018970          160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TP------ETGR  230 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~------~~~~  230 (348)
                      +|||||||||..+.+++...+. ...-.|.++..+...+..+...++.+.....     ..|+..-  +.      ..++
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~-----~lDv~~~~w~~~~~~~~~~~~  102 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPL-----ALDVSAPPWPWELPAPLSPES  102 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCe-----EeecCCCCCccccccccCCCC
Confidence            5999999999999999988876 6788999998887777766655554333222     2333322  21      2468


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee-------c-----CCCCceecCHHHHHHHHHh
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL-------D-----KEDRSITRSDFYFKELFSR  298 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~-------d-----~~~~~~~~s~~~l~~l~~~  298 (348)
                      ||.|++.+++|-++.+....+|+.+.++|+|||.|++..++..++.+.       |     .+...-.++.+++.++..+
T Consensus       103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~  182 (204)
T PF06080_consen  103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAA  182 (204)
T ss_pred             cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHH
Confidence            999999999999999889999999999999999999998776655321       1     1112223788899999999


Q ss_pred             cCCeEEEEeecCCC
Q 018970          299 CGLHIYKSKDQKGL  312 (348)
Q Consensus       299 aGf~~v~~~~~~~~  312 (348)
                      +||+..+...++.+
T Consensus       183 ~GL~l~~~~~MPAN  196 (204)
T PF06080_consen  183 HGLELEEDIDMPAN  196 (204)
T ss_pred             CCCccCcccccCCC
Confidence            99998887766543

The function of this family is unknown.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.43  E-value=1.4e-12  Score=116.36  Aligned_cols=101  Identities=19%  Similarity=0.171  Sum_probs=81.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||||||+|+++..++....  .+|+++|+++.+++.+++++...++      .++++.++|......+.+.||
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~~~~~~~fD  147 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLGYEENAPYD  147 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCcCCCcC
Confidence            56788999999999999988876532  3799999999999999999876432      368999999877554557899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++...+++++        +.+.+.|||||.|++..
T Consensus       148 ~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        148 RIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             EEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence            999987766544        35677899999998864

>PRK14968 putative methyltransferase; Provisional

Probab=99.42  E-value=5.7e-12  Score=109.62  Aligned_cols=134  Identities=15%  Similarity=0.118  Sum_probs=98.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+ ..|+++|.|+.+++.+++++...++.    ...+.+...|+.+... ..+||+|+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~~~~-~~~~d~vi   95 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLFEPFR-GDKFDVIL   95 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEecccccccc-ccCceEEE
Confidence            456789999999999999998774 46999999999999999887654331    1126777788766433 35899999


Q ss_pred             echhhhcCC-------------------hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHH
Q 018970          236 VQWCIGHLT-------------------DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELF  296 (348)
Q Consensus       236 ~~~~l~~~~-------------------~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~  296 (348)
                      ++..+.+..                   ...+..+++++.++|||||.+++.....              ...+.+.+++
T Consensus        96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--------------~~~~~l~~~~  161 (188)
T PRK14968         96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--------------TGEDEVLEYL  161 (188)
T ss_pred             ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--------------CCHHHHHHHH
Confidence            876543311                   1235678999999999999988764211              2346788999


Q ss_pred             HhcCCeEEEEeec
Q 018970          297 SRCGLHIYKSKDQ  309 (348)
Q Consensus       297 ~~aGf~~v~~~~~  309 (348)
                      .++||++......
T Consensus       162 ~~~g~~~~~~~~~  174 (188)
T PRK14968        162 EKLGFEAEVVAEE  174 (188)
T ss_pred             HHCCCeeeeeeec
Confidence            9999998775543

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.42  E-value=6.5e-13  Score=113.22  Aligned_cols=122  Identities=12%  Similarity=0.047  Sum_probs=91.6

Q ss_pred             EEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCc
Q 018970          184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG  263 (348)
Q Consensus       184 ~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG  263 (348)
                      +|+|+|+.|++.|+++......   ....++++.++|+.++++++++||+|++..+++++.  |...++++++++|||||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~---~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG   75 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKAR---SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGS   75 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccc---cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCe
Confidence            4899999999999876542110   002468999999999998888999999999999998  78899999999999999


Q ss_pred             EEEEEecccCCCc--------e----------ecCCCCc---------eecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          264 FFVLKENIARSGF--------V----------LDKEDRS---------ITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       264 ~lii~~~~~~~~~--------~----------~d~~~~~---------~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      .+++.+.......        .          .......         ...+.+++.++++++||+.+....+.
T Consensus        76 ~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~  149 (160)
T PLN02232         76 RVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS  149 (160)
T ss_pred             EEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence            9999875432211        0          0000011         11488899999999999988765543

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.42  E-value=1.8e-12  Score=115.76  Aligned_cols=101  Identities=18%  Similarity=0.114  Sum_probs=81.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||||||+|.++..++.....  .|+++|+++.+++.|++++...++      .++++...|+.+.....++||
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD  148 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQGWEPLAPYD  148 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccCCcccCCCC
Confidence            567889999999999999988866433  599999999999999999876543      468899999877544446899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++.....+++        +.+.+.|+|||+|++.-
T Consensus       149 ~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       149 RIYVTAAGPKIP--------EALIDQLKEGGILVMPV  177 (215)
T ss_pred             EEEEcCCccccc--------HHHHHhcCcCcEEEEEE
Confidence            999887766544        45778899999999863

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PHA03411 putative methyltransferase; Provisional

Probab=99.41  E-value=5.2e-12  Score=115.01  Aligned_cols=129  Identities=18%  Similarity=0.224  Sum_probs=97.7

Q ss_pred             CCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ...+|||+|||+|.++..++.+. ..+|+++|+|+.|++.+++++.           ++++.+.|+.++... .+||+|+
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~e~~~~-~kFDlII  131 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------EAEWITSDVFEFESN-EKFDVVI  131 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------CCEEEECchhhhccc-CCCcEEE
Confidence            45689999999999999887664 3479999999999999988742           478899999887643 6899999


Q ss_pred             echhhhcCChhh------------------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHH
Q 018970          236 VQWCIGHLTDDD------------------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFS  297 (348)
Q Consensus       236 ~~~~l~~~~~~d------------------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~  297 (348)
                      ++..+++.+..+                  +..+++....+|+|+|.+++.-  ...+.+      .-..+.+++.++++
T Consensus       132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y--ss~~~y------~~sl~~~~y~~~l~  203 (279)
T PHA03411        132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY--SGRPYY------DGTMKSNKYLKWSK  203 (279)
T ss_pred             EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE--eccccc------cccCCHHHHHHHHH
Confidence            999999875432                  2456777788999999776651  111110      11257889999999


Q ss_pred             hcCCeEEE
Q 018970          298 RCGLHIYK  305 (348)
Q Consensus       298 ~aGf~~v~  305 (348)
                      ++||...-
T Consensus       204 ~~g~~~~~  211 (279)
T PHA03411        204 QTGLVTYA  211 (279)
T ss_pred             hcCcEecC
Confidence            99998643

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.40  E-value=9.9e-12  Score=115.63  Aligned_cols=128  Identities=17%  Similarity=0.127  Sum_probs=95.5

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ++.+|||+|||+|.++..++..... .|+++|+|+.+++.|++++...++     ..++.+...|+.+.. +.++||+|+
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----~~~i~~~~~D~~~~~-~~~~fD~Iv  194 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIQSDLFAAL-PGRKYDLIV  194 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhhcc-CCCCccEEE
Confidence            4468999999999999999977653 799999999999999999876543     346889999985532 335899999


Q ss_pred             echhhh------cCCh-----------------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHH
Q 018970          236 VQWCIG------HLTD-----------------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYF  292 (348)
Q Consensus       236 ~~~~l~------~~~~-----------------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l  292 (348)
                      ++....      ++..                 +....+++.+.++|+|||++++...                .+.+.+
T Consensus       195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g----------------~~~~~v  258 (284)
T TIGR03533       195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG----------------NSMEAL  258 (284)
T ss_pred             ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC----------------cCHHHH
Confidence            973211      1110                 1246789999999999999987542                123468


Q ss_pred             HHHHHhcCCeEEEE
Q 018970          293 KELFSRCGLHIYKS  306 (348)
Q Consensus       293 ~~l~~~aGf~~v~~  306 (348)
                      .+++..+||.....
T Consensus       259 ~~~~~~~~~~~~~~  272 (284)
T TIGR03533       259 EEAYPDVPFTWLEF  272 (284)
T ss_pred             HHHHHhCCCceeee
Confidence            88999999876543

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.39  E-value=2.8e-12  Score=121.89  Aligned_cols=128  Identities=13%  Similarity=-0.032  Sum_probs=99.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||+|||+|.++...+..+. .++|+|+++.|++.++.++...++      .++.+.+.|+.+++..+++||+|
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~------~~i~~~~~D~~~l~~~~~~~D~I  252 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGI------EDFFVKRGDATKLPLSSESVDAI  252 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCC------CCCeEEecchhcCCcccCCCCEE
Confidence            56778999999999999988765554 599999999999999998876544      23788899999988766899999


Q ss_pred             eechhhhcC-------ChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          235 WVQWCIGHL-------TDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       235 i~~~~l~~~-------~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      +++..+..-       ..+-...+++.+.++|||||++++....                 ...+.++++++|| ++..-
T Consensus       253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~-----------------~~~~~~~~~~~g~-i~~~~  314 (329)
T TIGR01177       253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT-----------------RIDLESLAEDAFR-VVKRF  314 (329)
T ss_pred             EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC-----------------CCCHHHHHhhcCc-chhee
Confidence            997554321       1122578999999999999999887532                 1236678999999 66543

This family is found exclusively in the Archaea.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.39  E-value=2.3e-12  Score=119.59  Aligned_cols=128  Identities=16%  Similarity=0.251  Sum_probs=96.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++...+..+...|+++|+++.+++.|++++..+++     ..++.+  ....+..  .++||+|+
T Consensus       160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~-----~~~~~v--~~~~~~~--~~~~dlvv  230 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGV-----EDRIEV--SLSEDLV--EGKFDLVV  230 (295)
T ss_dssp             STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT------TTCEEE--SCTSCTC--CS-EEEEE
T ss_pred             cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCC-----CeeEEE--EEecccc--cccCCEEE
Confidence            46679999999999999988877888999999999999999999876544     223333  2222222  37899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCC
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGL  312 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~  312 (348)
                      +|-...     -+..++..+.++|+|||+++++....              -..+.+.+.+++ ||++++...+..+
T Consensus       231 ANI~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl~--------------~~~~~v~~a~~~-g~~~~~~~~~~~W  287 (295)
T PF06325_consen  231 ANILAD-----VLLELAPDIASLLKPGGYLILSGILE--------------EQEDEVIEAYKQ-GFELVEEREEGEW  287 (295)
T ss_dssp             EES-HH-----HHHHHHHHCHHHEEEEEEEEEEEEEG--------------GGHHHHHHHHHT-TEEEEEEEEETTE
T ss_pred             ECCCHH-----HHHHHHHHHHHhhCCCCEEEEccccH--------------HHHHHHHHHHHC-CCEEEEEEEECCE
Confidence            876655     46788899999999999999987432              234568888887 9999988776543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.38  E-value=1.3e-11  Score=118.68  Aligned_cols=129  Identities=17%  Similarity=0.176  Sum_probs=95.6

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCceeEE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI  234 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~I  234 (348)
                      ++.+|||+|||+|.++..++...+. .|+++|+|+.|++.|++++...       ..++.+.++|+.+... ..++||+|
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-------g~rV~fi~gDl~e~~l~~~~~FDLI  323 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-------GARVEFAHGSWFDTDMPSEGKWDII  323 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCcEEEEEcchhccccccCCCccEE
Confidence            4468999999999999998876543 7999999999999999998653       2368899999865432 23579999


Q ss_pred             eechhhhcCC---------------------h--hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970          235 WVQWCIGHLT---------------------D--DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY  291 (348)
Q Consensus       235 i~~~~l~~~~---------------------~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~  291 (348)
                      +++.....-.                     +  +-+..+++.+.+.|+|||.+++....               ...+.
T Consensus       324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---------------~Q~e~  388 (423)
T PRK14966        324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---------------DQGAA  388 (423)
T ss_pred             EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---------------cHHHH
Confidence            9976532110                     0  12446777888999999998764321               12456


Q ss_pred             HHHHHHhcCCeEEEEe
Q 018970          292 FKELFSRCGLHIYKSK  307 (348)
Q Consensus       292 l~~l~~~aGf~~v~~~  307 (348)
                      +.+++++.||..++..
T Consensus       389 V~~ll~~~Gf~~v~v~  404 (423)
T PRK14966        389 VRGVLAENGFSGVETL  404 (423)
T ss_pred             HHHHHHHCCCcEEEEE
Confidence            8899999999877654

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.38  E-value=7.9e-13  Score=106.17  Aligned_cols=107  Identities=22%  Similarity=0.261  Sum_probs=85.8

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeEEe
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW  235 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~Ii  235 (348)
                      +.+|||+|||+|.++..++..+..+++++|+++..++.++.++...++     ..++++.+.|+.+..  .+.++||+|+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~D~Iv   75 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDARDLPEPLPDGKFDLIV   75 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchhhchhhccCceeEEEE
Confidence            358999999999999999988845799999999999999998876433     356899999998765  5568999999


Q ss_pred             echhhhcCCh------hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          236 VQWCIGHLTD------DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       236 ~~~~l~~~~~------~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ++..+.....      .....+++++.++|+|||.+++..
T Consensus        76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            9888774321      235689999999999999998864

...

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.36  E-value=1.2e-11  Score=109.87  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=75.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------  225 (348)
                      ..++.+|||||||+|.++..+++...  ..|+++|+++ |.        .        ..++.++++|+.+..       
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~--------~~~v~~i~~D~~~~~~~~~i~~  111 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------P--------IVGVDFLQGDFRDELVLKALLE  111 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------C--------CCCcEEEecCCCChHHHHHHHH
Confidence            35677999999999999999987753  2799999987 21        1        134789999998853       


Q ss_pred             -CCCCceeEEeechhhhcCChh--h-------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 -PETGRYDVIWVQWCIGHLTDD--D-------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~--d-------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                       ...++||+|++..+.++....  |       ...+++.+.++|||||.|++..
T Consensus       112 ~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~  165 (209)
T PRK11188        112 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV  165 (209)
T ss_pred             HhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence             345789999998766654321  1       2468999999999999999975

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.36  E-value=3.5e-12  Score=110.67  Aligned_cols=164  Identities=18%  Similarity=0.234  Sum_probs=102.5

Q ss_pred             hhhhHHHh----hhhccccccccccccccCcccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHH
Q 018970          101 KKTQWYRE----GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL  176 (348)
Q Consensus       101 ~~~~~y~~----~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la  176 (348)
                      -...+|..    +.+...+.+..|+.+..||...-..+...+-+.+...+..      .++...|.|+|||.+.++..+-
T Consensus        18 lNE~LYT~~s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~------~~~~~viaD~GCGdA~la~~~~   91 (219)
T PF05148_consen   18 LNEQLYTTSSEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK------RPKSLVIADFGCGDAKLAKAVP   91 (219)
T ss_dssp             HHHHHHHS-HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT------S-TTS-EEEES-TT-HHHHH--
T ss_pred             HHHhHhcCCHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh------cCCCEEEEECCCchHHHHHhcc
Confidence            34455542    3344555555666666666655555555555555555543      3456799999999999997653


Q ss_pred             HhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHH
Q 018970          177 IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK  256 (348)
Q Consensus       177 ~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~  256 (348)
                       ... .|...|.-+                     .+-.+..+|+.+.|.+++++|++|++.+|+. +  ++..+++++.
T Consensus        92 -~~~-~V~SfDLva---------------------~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-T--n~~~fi~EA~  145 (219)
T PF05148_consen   92 -NKH-KVHSFDLVA---------------------PNPRVTACDIANVPLEDESVDVAVFCLSLMG-T--NWPDFIREAN  145 (219)
T ss_dssp             -S----EEEEESS----------------------SSTTEEES-TTS-S--TT-EEEEEEES---S-S---HHHHHHHHH
T ss_pred             -cCc-eEEEeeccC---------------------CCCCEEEecCccCcCCCCceeEEEEEhhhhC-C--CcHHHHHHHH
Confidence             333 499999632                     2345778999999999999999999998885 3  6889999999


Q ss_pred             HcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          257 VGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       257 ~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      |+|||||.|+|.|....           + -+.+.+.+.++..||++.....
T Consensus       146 RvLK~~G~L~IAEV~SR-----------f-~~~~~F~~~~~~~GF~~~~~d~  185 (219)
T PF05148_consen  146 RVLKPGGILKIAEVKSR-----------F-ENVKQFIKALKKLGFKLKSKDE  185 (219)
T ss_dssp             HHEEEEEEEEEEEEGGG-------------S-HHHHHHHHHCTTEEEEEEE-
T ss_pred             heeccCcEEEEEEeccc-----------C-cCHHHHHHHHHHCCCeEEeccc
Confidence            99999999999995432           1 1557799999999999888543

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.35  E-value=2.8e-11  Score=113.74  Aligned_cols=126  Identities=18%  Similarity=0.154  Sum_probs=93.4

Q ss_pred             CcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970          159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ  237 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~  237 (348)
                      .+|||+|||+|.++..++...+. .|+++|+|+.+++.|++++...++     ..++++.+.|+.+.. +.++||+|+++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----~~~i~~~~~D~~~~l-~~~~fDlIvsN  208 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIESDLFAAL-PGRRYDLIVSN  208 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCcEEEEECchhhhC-CCCCccEEEEC
Confidence            68999999999999999877653 799999999999999999876543     346899999986532 23589999997


Q ss_pred             hhh-------------hcCCh----------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHH
Q 018970          238 WCI-------------GHLTD----------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKE  294 (348)
Q Consensus       238 ~~l-------------~~~~~----------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~  294 (348)
                      ...             +|-+.          +....+++.+.++|+|||.+++....                +...+.+
T Consensus       209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~----------------~~~~~~~  272 (307)
T PRK11805        209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN----------------SRVHLEE  272 (307)
T ss_pred             CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc----------------CHHHHHH
Confidence            321             11110          12467899999999999999875321                2245778


Q ss_pred             HHHhcCCeEEEE
Q 018970          295 LFSRCGLHIYKS  306 (348)
Q Consensus       295 l~~~aGf~~v~~  306 (348)
                      ++...||.....
T Consensus       273 ~~~~~~~~~~~~  284 (307)
T PRK11805        273 AYPDVPFTWLEF  284 (307)
T ss_pred             HHhhCCCEEEEe
Confidence            888888765443

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.34  E-value=4.9e-11  Score=110.31  Aligned_cols=130  Identities=23%  Similarity=0.277  Sum_probs=96.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      .++.+|||+|||+|.++..++..... .|+++|+|+.+++.|++++.. ..     ..++.+...|+.+... .++||+|
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-~~-----~~~i~~~~~d~~~~~~-~~~fD~I  179 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH-GL-----GARVEFLQGDWFEPLP-GGRFDLI  179 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-CC-----CCcEEEEEccccCcCC-CCceeEE
Confidence            45678999999999999999877643 799999999999999998761 11     3468899998855322 4689999


Q ss_pred             eechhhhc------CC------------------hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHH
Q 018970          235 WVQWCIGH------LT------------------DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDF  290 (348)
Q Consensus       235 i~~~~l~~------~~------------------~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~  290 (348)
                      +++.....      +.                  -+.+..+++++.++|+|||.+++....               ...+
T Consensus       180 v~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---------------~~~~  244 (275)
T PRK09328        180 VSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---------------DQGE  244 (275)
T ss_pred             EECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---------------hHHH
Confidence            98643321      10                  023467889999999999999884311               1235


Q ss_pred             HHHHHHHhcCCeEEEEe
Q 018970          291 YFKELFSRCGLHIYKSK  307 (348)
Q Consensus       291 ~l~~l~~~aGf~~v~~~  307 (348)
                      .+.+++++.||..+...
T Consensus       245 ~~~~~l~~~gf~~v~~~  261 (275)
T PRK09328        245 AVRALLAAAGFADVETR  261 (275)
T ss_pred             HHHHHHHhCCCceeEEe
Confidence            68899999999866653

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.33  E-value=1.3e-11  Score=110.08  Aligned_cols=101  Identities=18%  Similarity=0.086  Sum_probs=79.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||+|||+|.++..++... ..|+++|+++.+++.+++++...++      .++++...|..+.....++||+|
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~I  148 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWKGWPAYAPFDRI  148 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCcccCCCcCCCcCEE
Confidence            5677899999999999998776554 4699999999999999998876543      35888888876533334789999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      ++...+++++        +.+.+.|+|||.+++...
T Consensus       149 ~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        149 LVTAAAPEIP--------RALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence            9987766543        457789999999998753

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.33  E-value=4.5e-12  Score=111.60  Aligned_cols=118  Identities=17%  Similarity=0.260  Sum_probs=81.7

Q ss_pred             hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce
Q 018970          135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT  214 (348)
Q Consensus       135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i  214 (348)
                      ..+...++..+...      -.....++|+|||+|..++-++ ..+.+|+++|+|+.||+.|++..+..-.     ....
T Consensus        17 P~YPtdw~~~ia~~------~~~h~~a~DvG~G~Gqa~~~ia-e~~k~VIatD~s~~mL~~a~k~~~~~y~-----~t~~   84 (261)
T KOG3010|consen   17 PSYPTDWFKKIASR------TEGHRLAWDVGTGNGQAARGIA-EHYKEVIATDVSEAMLKVAKKHPPVTYC-----HTPS   84 (261)
T ss_pred             CCCcHHHHHHHHhh------CCCcceEEEeccCCCcchHHHH-HhhhhheeecCCHHHHHHhhcCCCcccc-----cCCc
Confidence            33445566665542      1222379999999996666555 5677899999999999999886543211     1122


Q ss_pred             eEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCc-EEEE
Q 018970          215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVL  267 (348)
Q Consensus       215 ~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG-~lii  267 (348)
                      .+...++.++.-.+++.|+|++..++|.+.   +..+++.++|+||+.| .+.+
T Consensus        85 ~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd---le~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   85 TMSSDEMVDLLGGEESVDLITAAQAVHWFD---LERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             cccccccccccCCCcceeeehhhhhHHhhc---hHHHHHHHHHHcCCCCCEEEE
Confidence            333334444443468999999999999876   7899999999998876 4444

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.33  E-value=5.4e-11  Score=110.78  Aligned_cols=128  Identities=22%  Similarity=0.192  Sum_probs=94.2

Q ss_pred             CcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970          159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ  237 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~  237 (348)
                      .+|||+|||+|.++..++..... .|+++|+|+.+++.|++++...++     ..++.+..+|+.+.. +..+||+|+++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----~~~v~~~~~d~~~~~-~~~~fDlIvsN  189 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----EHRVEFIQSNLFEPL-AGQKIDIIVSN  189 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhccC-cCCCccEEEEC
Confidence            68999999999999999977653 799999999999999998875433     235889999886632 22479999986


Q ss_pred             h-------------hhhcCCh----------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHH
Q 018970          238 W-------------CIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKE  294 (348)
Q Consensus       238 ~-------------~l~~~~~----------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~  294 (348)
                      .             ++.|-+.          +.+..+++.+.++|+|||++++.....               ..+.+.+
T Consensus       190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~---------------q~~~~~~  254 (284)
T TIGR00536       190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW---------------QQKSLKE  254 (284)
T ss_pred             CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc---------------HHHHHHH
Confidence            3             2222221          146678999999999999988764321               1335777


Q ss_pred             HHH-hcCCeEEEEe
Q 018970          295 LFS-RCGLHIYKSK  307 (348)
Q Consensus       295 l~~-~aGf~~v~~~  307 (348)
                      ++. ..||..++..
T Consensus       255 ~~~~~~~~~~~~~~  268 (284)
T TIGR00536       255 LLRIKFTWYDVENG  268 (284)
T ss_pred             HHHhcCCCceeEEe
Confidence            777 4688765543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.33  E-value=4.6e-11  Score=112.95  Aligned_cols=135  Identities=18%  Similarity=0.287  Sum_probs=89.5

Q ss_pred             hhhhHHHHHHHHhhhcCCcc--CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC----CCCCCc
Q 018970          135 IKGSEAFLQMLLSDRFPNAR--NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP----ENHMAP  208 (348)
Q Consensus       135 ~~~~~~~l~~~l~~~l~~~~--~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~----~~~~~~  208 (348)
                      +.....+++..+........  ..++.+|||+|||-|..+..........++|+|+|...|+.|+++...    ..-...
T Consensus        38 lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~  117 (331)
T PF03291_consen   38 LRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQY  117 (331)
T ss_dssp             HHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTS
T ss_pred             HHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccc
Confidence            34445666666654432111  127789999999999888777777888999999999999999998721    000000


Q ss_pred             CCCcceeEEEcCCCCC------CCCCCceeEEeechhhhcCC--hhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          209 DMHKATNFFCVPLQDF------TPETGRYDVIWVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       209 ~~~~~i~~~~~d~~~~------~~~~~~fD~Ii~~~~l~~~~--~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ...-...|+.+|...-      ......||+|-|..++||.=  .+....+|+++.+.|+|||+||.+.
T Consensus       118 ~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~  186 (331)
T PF03291_consen  118 RFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT  186 (331)
T ss_dssp             EECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            1123466777776542      22225999999999999873  3456779999999999999999864

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.33  E-value=8.9e-11  Score=100.42  Aligned_cols=143  Identities=17%  Similarity=0.131  Sum_probs=109.7

Q ss_pred             HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEE
Q 018970          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF  217 (348)
Q Consensus       139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~  217 (348)
                      .+-+.-+.-..|.   +.++.+++|||||+|.++..++..++. +|+++|-++++++..+++..+.++      .|+.+.
T Consensus        19 K~EIRal~ls~L~---~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~n~~vv   89 (187)
T COG2242          19 KEEIRALTLSKLR---PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------DNLEVV   89 (187)
T ss_pred             HHHHHHHHHHhhC---CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------CcEEEE
Confidence            3444444444444   789999999999999999999955555 899999999999999999887653      678899


Q ss_pred             EcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHH
Q 018970          218 CVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFS  297 (348)
Q Consensus       218 ~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~  297 (348)
                      .+++-+.-....++|.|++... .     .+..+++.+...|||||.+++.....              -+.....+.++
T Consensus        90 ~g~Ap~~L~~~~~~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~naitl--------------E~~~~a~~~~~  149 (187)
T COG2242          90 EGDAPEALPDLPSPDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVANAITL--------------ETLAKALEALE  149 (187)
T ss_pred             eccchHhhcCCCCCCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEeecH--------------HHHHHHHHHHH
Confidence            9988765333237999999888 4     46689999999999999999865332              13345678899


Q ss_pred             hcCC-eEEEEeecC
Q 018970          298 RCGL-HIYKSKDQK  310 (348)
Q Consensus       298 ~aGf-~~v~~~~~~  310 (348)
                      +.|+ +++......
T Consensus       150 ~~g~~ei~~v~is~  163 (187)
T COG2242         150 QLGGREIVQVQISR  163 (187)
T ss_pred             HcCCceEEEEEeec
Confidence            9999 777655443

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.32  E-value=4.2e-11  Score=105.42  Aligned_cols=104  Identities=16%  Similarity=0.122  Sum_probs=78.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD  232 (348)
                      ..++.+|||+|||+|.++..++.... ..|+++|+|+.|++.+++++...++      .++++...|+.+ +......+|
T Consensus        38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~d  111 (196)
T PRK07402         38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------KNVEVIEGSAPECLAQLAPAPD  111 (196)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CCeEEEECchHHHHhhCCCCCC
Confidence            56778999999999999998876543 3799999999999999998865432      357888888754 221113457


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      .|++..    .  .++..+++++.++|+|||.+++...
T Consensus       112 ~v~~~~----~--~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        112 RVCIEG----G--RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             EEEEEC----C--cCHHHHHHHHHHhcCCCeEEEEEee
Confidence            765432    1  2567899999999999999998863

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.28  E-value=3.8e-11  Score=92.36  Aligned_cols=102  Identities=26%  Similarity=0.337  Sum_probs=82.7

Q ss_pred             cEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCceeEEeech
Q 018970          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQW  238 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~Ii~~~  238 (348)
                      +|||+|||.|.++..++......++++|+++.+++.+++......      ..++.+...|+.+... ..++||+|++..
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~i~~~~   74 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDAEELPPEADESFDVIISDP   74 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------ccceEEEEcChhhhccccCCceEEEEEcc
Confidence            589999999999998886344489999999999999985332211      3568888888888663 447899999999


Q ss_pred             hhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       239 ~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      +++++ .+....+++.+.+.|+|||.+++.
T Consensus        75 ~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          75 PLHHL-VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            99884 337889999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.27  E-value=2.7e-11  Score=115.91  Aligned_cols=107  Identities=18%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--CCCCCceeE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV  233 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~  233 (348)
                      .+..+||||||+|.++..++...+. .++|+|+++.|++.|.+++...++      .++.+..+|+..+  ..+++++|.
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ll~~~~~~s~D~  195 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARLLLELLPSNSVEK  195 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHhhhhCCCCceeE
Confidence            4458999999999999999988765 899999999999999988866543      4688999998654  245689999


Q ss_pred             EeechhhhcCChhh----HHHHHHHHHHcCCCCcEEEEEe
Q 018970          234 IWVQWCIGHLTDDD----FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~~d----~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |+++....+.....    ...+++.+.++|+|||.+.+..
T Consensus       196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T  235 (390)
T PRK14121        196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT  235 (390)
T ss_pred             EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence            99865433221111    2589999999999999999964

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.26  E-value=6.6e-11  Score=118.38  Aligned_cols=131  Identities=18%  Similarity=0.187  Sum_probs=95.4

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ++.+|||+|||+|.++..++...+. .|+++|+|+.+++.|++++...++     ..++.+..+|+.+.. +.++||+|+
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----~~~v~~~~~D~~~~~-~~~~fDlIv  211 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----TDRIQIIHSNWFENI-EKQKFDFIV  211 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----ccceeeeecchhhhC-cCCCccEEE
Confidence            3468999999999999998876543 799999999999999999865433     346888888875432 235899999


Q ss_pred             echhhh--------------cCC------h----hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970          236 VQWCIG--------------HLT------D----DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY  291 (348)
Q Consensus       236 ~~~~l~--------------~~~------~----~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~  291 (348)
                      ++....              |-+      .    +.+..+++.+.++|+|||.+++....               ...+.
T Consensus       212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~---------------~q~~~  276 (506)
T PRK01544        212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF---------------KQEEA  276 (506)
T ss_pred             ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC---------------chHHH
Confidence            864321              111      0    12456788899999999999874321               13456


Q ss_pred             HHHHHHhcCCeEEEEee
Q 018970          292 FKELFSRCGLHIYKSKD  308 (348)
Q Consensus       292 l~~l~~~aGf~~v~~~~  308 (348)
                      +.+++.+.||..+....
T Consensus       277 v~~~~~~~g~~~~~~~~  293 (506)
T PRK01544        277 VTQIFLDHGYNIESVYK  293 (506)
T ss_pred             HHHHHHhcCCCceEEEe
Confidence            88899999998776543

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.26  E-value=7.1e-11  Score=107.29  Aligned_cols=102  Identities=23%  Similarity=0.342  Sum_probs=86.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..+..+|||||+|.|.++..++.+++. +++.+|. |..++.+++  .          .++++..+|+. -+.+ . +|+
T Consensus        98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--~----------~rv~~~~gd~f-~~~P-~-~D~  161 (241)
T PF00891_consen   98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--A----------DRVEFVPGDFF-DPLP-V-ADV  161 (241)
T ss_dssp             TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--T----------TTEEEEES-TT-TCCS-S-ESE
T ss_pred             ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--c----------cccccccccHH-hhhc-c-ccc
Confidence            455578999999999999999999887 8999997 888988887  1          46999999998 3444 4 999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCC--cEEEEEeccc
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPG--GFFVLKENIA  272 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg--G~lii~~~~~  272 (348)
                      |++.++||++++++...+|+++++.|+||  |.|+|.|.+.
T Consensus       162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~  202 (241)
T PF00891_consen  162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL  202 (241)
T ss_dssp             EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred             eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence            99999999999999999999999999999  9999998664

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.23  E-value=1.6e-10  Score=105.59  Aligned_cols=126  Identities=23%  Similarity=0.219  Sum_probs=92.5

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--CCCceeEE
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVI  234 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~fD~I  234 (348)
                      +.+|||+|||+|.++..++..... .|+++|+|+.+++.|++++...         +.++.+.|+.+...  ..++||+|
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~---------~~~~~~~D~~~~l~~~~~~~fDlV  157 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA---------GGTVHEGDLYDALPTALRGRVDIL  157 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---------CCEEEEeechhhcchhcCCCEeEE
Confidence            458999999999999999876543 7999999999999999998652         14678888765321  12579999


Q ss_pred             eechhhh------cCCh------------------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHH
Q 018970          235 WVQWCIG------HLTD------------------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDF  290 (348)
Q Consensus       235 i~~~~l~------~~~~------------------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~  290 (348)
                      +++....      .+++                  +-+..+++.+.++|+|||.+++....               ....
T Consensus       158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---------------~~~~  222 (251)
T TIGR03704       158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---------------RQAP  222 (251)
T ss_pred             EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---------------chHH
Confidence            9976432      1111                  01457888888999999999987421               1234


Q ss_pred             HHHHHHHhcCCeEEEEe
Q 018970          291 YFKELFSRCGLHIYKSK  307 (348)
Q Consensus       291 ~l~~l~~~aGf~~v~~~  307 (348)
                      .+.+++++.||+.....
T Consensus       223 ~v~~~l~~~g~~~~~~~  239 (251)
T TIGR03704       223 LAVEAFARAGLIARVAS  239 (251)
T ss_pred             HHHHHHHHCCCCceeeE
Confidence            68889999999866544

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.1e-10  Score=101.98  Aligned_cols=101  Identities=23%  Similarity=0.218  Sum_probs=85.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|+.+.-|+ +...+|+.+|..+...+.|++++...|+      .|+.+.++|...--.+.+.||.|
T Consensus        70 ~~~g~~VLEIGtGsGY~aAvla-~l~~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~G~~~~aPyD~I  142 (209)
T COG2518          70 LKPGDRVLEIGTGSGYQAAVLA-RLVGRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSKGWPEEAPYDRI  142 (209)
T ss_pred             CCCCCeEEEECCCchHHHHHHH-HHhCeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCcccCCCCCCCcCEE
Confidence            7888999999999999999776 4444799999999999999999988765      45899999987643444899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +.......+|        +.+.+.|||||.+++-..
T Consensus       143 ~Vtaaa~~vP--------~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         143 IVTAAAPEVP--------EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             EEeeccCCCC--------HHHHHhcccCCEEEEEEc
Confidence            9999988888        356778999999999764

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=99.21  E-value=5.8e-11  Score=105.34  Aligned_cols=154  Identities=18%  Similarity=0.234  Sum_probs=109.3

Q ss_pred             hhccccccccccccccCcccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCC
Q 018970          110 ISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV  189 (348)
Q Consensus       110 ~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S  189 (348)
                      .+.+...+..|+.+..||......+....-+.+.+.+..      ......|.|+|||.+.++.    .....|+.+|.-
T Consensus       139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~------r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~  208 (325)
T KOG3045|consen  139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKR------RPKNIVIADFGCGEAKIAS----SERHKVHSFDLV  208 (325)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHh------CcCceEEEecccchhhhhh----ccccceeeeeee
Confidence            344445555566555565443333444444455555543      2455689999999998776    333358888852


Q ss_pred             HHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          190 SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       190 ~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                                           ..+-++..+|+.+.|.++++.|+++++.+|+. +  ++..++++++|+|+|||.++|.+
T Consensus       209 ---------------------a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-t--n~~df~kEa~RiLk~gG~l~IAE  264 (325)
T KOG3045|consen  209 ---------------------AVNERVIACDMRNVPLEDESVDVAVFCLSLMG-T--NLADFIKEANRILKPGGLLYIAE  264 (325)
T ss_pred             ---------------------cCCCceeeccccCCcCccCcccEEEeeHhhhc-c--cHHHHHHHHHHHhccCceEEEEe
Confidence                                 23566788999999999999999999888774 3  68999999999999999999998


Q ss_pred             cccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          270 NIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       270 ~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      .-..  |          -+...+.+.+...||.+......
T Consensus       265 v~SR--f----------~dv~~f~r~l~~lGF~~~~~d~~  292 (325)
T KOG3045|consen  265 VKSR--F----------SDVKGFVRALTKLGFDVKHKDVS  292 (325)
T ss_pred             hhhh--c----------ccHHHHHHHHHHcCCeeeehhhh
Confidence            5432  1          23455889999999998876543

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.21  E-value=9.9e-11  Score=102.36  Aligned_cols=98  Identities=21%  Similarity=0.152  Sum_probs=72.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------  225 (348)
                      +.++.+|||+|||+|.++..++.....  .|+++|+|+.+      .           ..++.+.+.|+.+..       
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~-----------~~~i~~~~~d~~~~~~~~~l~~   92 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P-----------IENVDFIRGDFTDEEVLNKIRE   92 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c-----------CCCceEEEeeCCChhHHHHHHH
Confidence            567789999999999999988876533  69999999864      1           134678888876642       


Q ss_pred             -CCCCceeEEeechhh--------hcCCh-hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 -PETGRYDVIWVQWCI--------GHLTD-DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l--------~~~~~-~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                       .+.++||+|++..+.        +|... ++...+++.+.++|+|||.+++..
T Consensus        93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438        93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence             234679999986432        22211 234689999999999999999863

>PRK00811 spermidine synthase; Provisional

Probab=99.21  E-value=4.8e-11  Score=110.96  Aligned_cols=112  Identities=20%  Similarity=0.200  Sum_probs=82.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~  233 (348)
                      +.+.+||+||||+|.++..+++. ...+|+++|+++.+++.|++.+....... -...+++++..|...+. ...++||+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-~~d~rv~v~~~Da~~~l~~~~~~yDv  153 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-YDDPRVELVIGDGIKFVAETENSFDV  153 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-ccCCceEEEECchHHHHhhCCCcccE
Confidence            45679999999999999999865 34589999999999999999875321100 01357889999987643 23478999


Q ss_pred             EeechhhhcCChhh--HHHHHHHHHHcCCCCcEEEEE
Q 018970          234 IWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       234 Ii~~~~l~~~~~~d--~~~~l~~~~~~LkpgG~lii~  268 (348)
                      |++...-.+.+...  ...+++.+.+.|+|||++++.
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            99854333222212  267899999999999998874

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=3.7e-10  Score=104.65  Aligned_cols=126  Identities=24%  Similarity=0.251  Sum_probs=92.9

Q ss_pred             cEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeech
Q 018970          160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW  238 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~  238 (348)
                      +|||+|||+|.++..++.+.+. +|+++|+|+.+++.|++++...++      .++.+...|+.+-.  .++||+|++|.
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------~~~~~~~~dlf~~~--~~~fDlIVsNP  184 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------VRVLVVQSDLFEPL--RGKFDLIVSNP  184 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------ccEEEEeeeccccc--CCceeEEEeCC
Confidence            7999999999999999988875 899999999999999999987543      23444444654422  25899999975


Q ss_pred             hhhcCC---------------------h--hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHH
Q 018970          239 CIGHLT---------------------D--DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKEL  295 (348)
Q Consensus       239 ~l~~~~---------------------~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l  295 (348)
                      ..---.                     +  +-...++..+.+.|+|||.+++.....               ..+.+.++
T Consensus       185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~---------------q~~~v~~~  249 (280)
T COG2890         185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT---------------QGEAVKAL  249 (280)
T ss_pred             CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC---------------cHHHHHHH
Confidence            422111                     0  124678888999999999988875322               25678999


Q ss_pred             HHhcC-CeEEEEee
Q 018970          296 FSRCG-LHIYKSKD  308 (348)
Q Consensus       296 ~~~aG-f~~v~~~~  308 (348)
                      |.+.| |..+....
T Consensus       250 ~~~~~~~~~v~~~~  263 (280)
T COG2890         250 FEDTGFFEIVETLK  263 (280)
T ss_pred             HHhcCCceEEEEEe
Confidence            99999 56555443

>PRK04457 spermidine synthase; Provisional

Probab=99.19  E-value=1.3e-10  Score=106.86  Aligned_cols=107  Identities=18%  Similarity=0.212  Sum_probs=81.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~  233 (348)
                      .++.+|||||||+|.++..++...+. +++++|+++.+++.|++.+...+.     ..+++++.+|+.++- ...++||+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~~~~~yD~  139 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAVHRHSTDV  139 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHhCCCCCCE
Confidence            45678999999999999999877654 799999999999999998764211     357899999986542 22368999


Q ss_pred             Eeechhhh--cCCh-hhHHHHHHHHHHcCCCCcEEEEE
Q 018970          234 IWVQWCIG--HLTD-DDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       234 Ii~~~~l~--~~~~-~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      |++.. ++  ..+. -....+++.+.+.|+|||++++-
T Consensus       140 I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        140 ILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             EEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            99752 21  1111 11368999999999999999884

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.18  E-value=1.5e-10  Score=109.09  Aligned_cols=101  Identities=20%  Similarity=0.190  Sum_probs=79.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+|||+|.++..++.....  .|+++|+++.+++.|++++...+.      .++.+..+|..+.....++||
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~~~~~~~~fD  151 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYYGVPEFAPYD  151 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhhcccccCCcc
Confidence            566789999999999999998866432  599999999999999998765432      357888888776554446899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++...+.+++        ..+.+.|+|||.+++..
T Consensus       152 ~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        152 VIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             EEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence            999986666543        34667899999988853

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.18  E-value=2.1e-10  Score=100.99  Aligned_cols=168  Identities=17%  Similarity=0.202  Sum_probs=105.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCC----CCCC----------------------
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE----NHMA----------------------  207 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~----~~~~----------------------  207 (348)
                      ...+.-+|||||..|.++..+++.+.. .|.|+||++..|..|++.+..-    .-..                      
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~  135 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR  135 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence            345678999999999999999977544 8999999999999999876421    0000                      


Q ss_pred             ---cCC-------CcceeEEEcCCCCCCCCCCceeEEeechhh--hcCC--hhhHHHHHHHHHHcCCCCcEEEEEecccC
Q 018970          208 ---PDM-------HKATNFFCVPLQDFTPETGRYDVIWVQWCI--GHLT--DDDFVSFFKRAKVGLKPGGFFVLKENIAR  273 (348)
Q Consensus       208 ---~~~-------~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l--~~~~--~~d~~~~l~~~~~~LkpgG~lii~~~~~~  273 (348)
                         ..+       ..|..+...|+.++  ....||+|+|..+-  -|+.  |+-+..+++++.++|.|||+|++-.-.. 
T Consensus       136 a~t~~~p~n~~f~~~n~vle~~dfl~~--~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpW-  212 (288)
T KOG2899|consen  136 AFTTDFPDNVWFQKENYVLESDDFLDM--IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPW-  212 (288)
T ss_pred             cccccCCcchhcccccEEEecchhhhh--ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCch-
Confidence               000       01222222233322  23579999874322  2444  4568999999999999999999853211 


Q ss_pred             CCc--------eecCCCCceecCHHHHHHHHHhc--CCeEEEEee-cCCCCccceEEEEEEEe
Q 018970          274 SGF--------VLDKEDRSITRSDFYFKELFSRC--GLHIYKSKD-QKGLPEELFAVKMYALT  325 (348)
Q Consensus       274 ~~~--------~~d~~~~~~~~s~~~l~~l~~~a--Gf~~v~~~~-~~~~~~~l~~v~~~~l~  325 (348)
                      ..+        ........+...++.+..++.+.  ||+-++... ........+.-.+|..+
T Consensus       213 ksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~skgf~R~i~~y~  275 (288)
T KOG2899|consen  213 KSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASKGFDRPILLYR  275 (288)
T ss_pred             HHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccccccccCccccceeeeee
Confidence            111        11222333446888899999886  666555443 22333445555666655

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.17  E-value=1.3e-10  Score=100.92  Aligned_cols=101  Identities=19%  Similarity=0.176  Sum_probs=78.9

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCCCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~Ii  235 (348)
                      .+.-|||||||+|..+..|.+.+. .++|+|+|+.|++.|.+.--           ..++..+|+-+ +|+.+++||.+|
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~-----------egdlil~DMG~GlpfrpGtFDg~I  117 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL-----------EGDLILCDMGEGLPFRPGTFDGVI  117 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh-----------hcCeeeeecCCCCCCCCCccceEE
Confidence            467899999999999998887775 59999999999999986321           14466666654 788889999999


Q ss_pred             echhhhcC---------ChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          236 VQWCIGHL---------TDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       236 ~~~~l~~~---------~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +..++..+         +...+..|+..++.+|++|+..++.-
T Consensus       118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf  160 (270)
T KOG1541|consen  118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF  160 (270)
T ss_pred             EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence            76554432         33446779999999999999988863

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.17  E-value=1.9e-10  Score=98.91  Aligned_cols=103  Identities=14%  Similarity=0.116  Sum_probs=78.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||+|||+|.++..++++. ..|+++|+++.|++.+++++..        ..++++...|+.+++.+...||.|
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~~~~~~~~d~v   81 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKFDLPKLQPYKV   81 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcCCccccCCCEE
Confidence            4566799999999999999999874 4699999999999999998754        246889999999988765679999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +++..++ +..+.+..+++..  .+.++|.+++..
T Consensus        82 i~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q~  113 (169)
T smart00650       82 VGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQK  113 (169)
T ss_pred             EECCCcc-cHHHHHHHHHhcC--CCcceEEEEEEH
Confidence            9987665 3323344444321  244778877753

>PHA03412 putative methyltransferase; Provisional

Probab=99.16  E-value=4e-10  Score=100.54  Aligned_cols=131  Identities=13%  Similarity=0.173  Sum_probs=90.7

Q ss_pred             CCcEEEEeccccHHHHHHHHhC----CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          158 HLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~----~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      +.+|||+|||+|.++..++.+.    ..+|+++|+++.+++.|+++..           ++.+...|+..... +++||+
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------~~~~~~~D~~~~~~-~~~FDl  117 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------EATWINADALTTEF-DTLFDM  117 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------CCEEEEcchhcccc-cCCccE
Confidence            5699999999999999888652    2279999999999999998753           37788899877654 368999


Q ss_pred             EeechhhhcCChhh----------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCce----ecCHHHHHHHHHhc
Q 018970          234 IWVQWCIGHLTDDD----------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSI----TRSDFYFKELFSRC  299 (348)
Q Consensus       234 Ii~~~~l~~~~~~d----------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~----~~s~~~l~~l~~~a  299 (348)
                      ||++..+.-....+          ...+++++.+++++|+. ++-.+...-.+.   ....+    .-+...+.+..++.
T Consensus       118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~---~~~~~~~~~~~~~~~~~~~~~~~  193 (241)
T PHA03412        118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYS---GTHYFRQDESTTSSKCKKFLDET  193 (241)
T ss_pred             EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCccc---CccceeeccCcccHHHHHHHHhc
Confidence            99998877443211          45688999996666664 554443332221   01111    02334577888888


Q ss_pred             CCeEE
Q 018970          300 GLHIY  304 (348)
Q Consensus       300 Gf~~v  304 (348)
                      |+...
T Consensus       194 ~~~~~  198 (241)
T PHA03412        194 GLEMN  198 (241)
T ss_pred             Ceeec
Confidence            87643

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.13  E-value=1.1e-10  Score=103.58  Aligned_cols=102  Identities=22%  Similarity=0.151  Sum_probs=76.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-C-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      ++++.+|||||||+|+.+.-++.... . .|+++|..+..++.|++++...++      .++.+.++|...--...+.||
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~g~~~~apfD  143 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSEGWPEEAPFD  143 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGGTTGGG-SEE
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhhccccCCCcC
Confidence            78899999999999999997775532 2 599999999999999999876443      478999998765434457899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      .|++......++        ..+.+.|++||++++.-.
T Consensus       144 ~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  144 RIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             EEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred             EEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence            999998877655        347777999999999653

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.13  E-value=2.4e-10  Score=118.71  Aligned_cols=133  Identities=15%  Similarity=0.134  Sum_probs=98.4

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~Ii  235 (348)
                      ++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...++.    ..++++.++|+.++. ...++||+|+
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~~l~~~~~~fDlIi  613 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLAWLKEAREQFDLIF  613 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHHHHHHcCCCcCEEE
Confidence            35799999999999999999777768999999999999999998765441    136899999986642 1136899999


Q ss_pred             echhhh-------cCC--hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          236 VQWCIG-------HLT--DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       236 ~~~~l~-------~~~--~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      +.....       ...  ..+...++..+.++|+|||.+++..+...             .+.  ..+++.++|+.+...
T Consensus       614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-------------~~~--~~~~~~~~g~~~~~i  678 (702)
T PRK11783        614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-------------FKM--DEEGLAKLGLKAEEI  678 (702)
T ss_pred             ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-------------CCh--hHHHHHhCCCeEEEE
Confidence            864321       000  13567889999999999999988754321             111  267888899997776


Q ss_pred             ee
Q 018970          307 KD  308 (348)
Q Consensus       307 ~~  308 (348)
                      ..
T Consensus       679 ~~  680 (702)
T PRK11783        679 TA  680 (702)
T ss_pred             ec
Confidence            54

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.13  E-value=3.3e-10  Score=102.51  Aligned_cols=114  Identities=15%  Similarity=0.170  Sum_probs=86.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------CC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE  227 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~  227 (348)
                      .++.+|||+|||+|..+..++....  ..|+++|+++++++.|++++...++     ..++++..+|+.+.-      .+
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----~~~i~~~~gda~~~L~~l~~~~~  141 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----DHKINFIQSDALSALDQLLNNDP  141 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEccHHHHHHHHHhCCC
Confidence            4567999999999999888876533  2799999999999999999987655     456899999887641      11


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK  280 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~  280 (348)
                      .++||+|++...     .+.+..++..+.+.|+|||.+++ ++....+.+.+.
T Consensus       142 ~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~-dn~l~~G~v~~~  188 (234)
T PLN02781        142 KPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAF-DNTLWFGFVAQE  188 (234)
T ss_pred             CCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEE-EcCCcCCeecCc
Confidence            368999987432     23567889999999999998666 444444554444

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.13  E-value=2.2e-10  Score=100.47  Aligned_cols=114  Identities=22%  Similarity=0.359  Sum_probs=74.0

Q ss_pred             CCCCcEEEEeccccH----HHHHHHHh---CCC---cEEEEcCCHHHHHHHHHH------------------h-CCCC--
Q 018970          156 NQHLVALDCGSGIGR----ITKNLLIR---YFN---EVDLLEPVSHFLDAARES------------------L-APEN--  204 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~----~~~~la~~---~~~---~v~~vD~S~~~l~~a~~~------------------~-~~~~--  204 (348)
                      .+..+|+..||++|.    ++..+.+.   ...   ++.|+|+|+.+++.|++-                  + ...+  
T Consensus        30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~  109 (196)
T PF01739_consen   30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG  109 (196)
T ss_dssp             -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred             CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence            466899999999995    33333331   122   799999999999999872                  1 0000  


Q ss_pred             C-CCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          205 H-MAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       205 ~-~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      + .......++.|...|+.+.....+.||+|+|.+++.+++.+....+++++++.|+|||+|++..
T Consensus       110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence            0 1112236799999999984444589999999999999999888999999999999999999964

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.10  E-value=6.9e-10  Score=109.37  Aligned_cols=133  Identities=15%  Similarity=0.176  Sum_probs=96.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET  228 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~  228 (348)
                      +.++.+|||+|||+|..+..++....  ..|+++|+++.+++.+++++...|+      .++.+.+.|+.+++    ...
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~  323 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLELKPQWR  323 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccccccccc
Confidence            56778999999999999999987642  2799999999999999999877654      35888999988765    234


Q ss_pred             CceeEEeec------hhhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecC
Q 018970          229 GRYDVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRS  288 (348)
Q Consensus       229 ~~fD~Ii~~------~~l~~~~~-------~d-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s  288 (348)
                      ++||.|++.      .++++-++       ++       ...++.++.++|||||.|+.++-.....           -.
T Consensus       324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~-----------En  392 (434)
T PRK14901        324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA-----------EN  392 (434)
T ss_pred             ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-----------hH
Confidence            689999963      34444332       11       3678999999999999998875221100           12


Q ss_pred             HHHHHHHHHhc-CCeEE
Q 018970          289 DFYFKELFSRC-GLHIY  304 (348)
Q Consensus       289 ~~~l~~l~~~a-Gf~~v  304 (348)
                      ...+...+++. +|++.
T Consensus       393 e~~v~~~l~~~~~~~~~  409 (434)
T PRK14901        393 EAQIEQFLARHPDWKLE  409 (434)
T ss_pred             HHHHHHHHHhCCCcEec
Confidence            34466667665 57754

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.09  E-value=1.1e-09  Score=107.85  Aligned_cols=133  Identities=17%  Similarity=0.126  Sum_probs=94.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~f  231 (348)
                      +.++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++...|+       .+.+.+.|+.++.  ...++|
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~~~~~~~~~~f  314 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARDPAQWWDGQPF  314 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCcccchhhcccCCC
Confidence            56778999999999999999988765 3799999999999999999876533       3678888987654  234689


Q ss_pred             eEEeechhhh------c-------CChhh-------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970          232 DVIWVQWCIG------H-------LTDDD-------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY  291 (348)
Q Consensus       232 D~Ii~~~~l~------~-------~~~~d-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~  291 (348)
                      |.|++.....      +       ...++       ...+++.+.++|||||.+++++-.....           -+.+.
T Consensus       315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-----------Ene~~  383 (427)
T PRK10901        315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE-----------ENEQQ  383 (427)
T ss_pred             CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-----------hCHHH
Confidence            9999533211      1       11112       2478999999999999999886321100           13345


Q ss_pred             HHHHHHhc-CCeEEE
Q 018970          292 FKELFSRC-GLHIYK  305 (348)
Q Consensus       292 l~~l~~~a-Gf~~v~  305 (348)
                      +...+++. +|+++.
T Consensus       384 v~~~l~~~~~~~~~~  398 (427)
T PRK10901        384 IKAFLARHPDAELLD  398 (427)
T ss_pred             HHHHHHhCCCCEEec
Confidence            66666654 576554

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.09  E-value=1.8e-10  Score=100.61  Aligned_cols=140  Identities=16%  Similarity=0.243  Sum_probs=106.1

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ  237 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~  237 (348)
                      ...++|||||-|.+...+..++...++.+|.|-.|++.++.--..        .....+.+.|-+.+++.++++|+|+++
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp--------~i~~~~~v~DEE~Ldf~ens~DLiisS  144 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDP--------SIETSYFVGDEEFLDFKENSVDLIISS  144 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCC--------ceEEEEEecchhcccccccchhhhhhh
Confidence            357999999999999999999988999999999999988754211        345778888988899888999999999


Q ss_pred             hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc----------eecCCCCcee---c-CHHHHHHHHHhcCCeE
Q 018970          238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF----------VLDKEDRSIT---R-SDFYFKELFSRCGLHI  303 (348)
Q Consensus       238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~----------~~d~~~~~~~---~-s~~~l~~l~~~aGf~~  303 (348)
                      ..+|++.  |+...+.+|+..|||+|.|+-+-.....-+          .......+-+   + ....+..++.++||..
T Consensus       145 lslHW~N--dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m  222 (325)
T KOG2940|consen  145 LSLHWTN--DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSM  222 (325)
T ss_pred             hhhhhhc--cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccc
Confidence            9999998  888999999999999999986421111100          0000111111   2 3346888999999997


Q ss_pred             EEEe
Q 018970          304 YKSK  307 (348)
Q Consensus       304 v~~~  307 (348)
                      ....
T Consensus       223 ~tvD  226 (325)
T KOG2940|consen  223 LTVD  226 (325)
T ss_pred             ceec
Confidence            7643

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.09  E-value=5.4e-09  Score=95.02  Aligned_cols=148  Identities=16%  Similarity=0.171  Sum_probs=113.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC---cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG  229 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~---~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~  229 (348)
                      ..+.+||||.||.|+.....+...+.   +|...|.|+..++..++.+.+.|+     ...+.|.+.|+.+..   .-.-
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----~~i~~f~~~dAfd~~~l~~l~p  208 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----EDIARFEQGDAFDRDSLAALDP  208 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----ccceEEEecCCCCHhHhhccCC
Confidence            56789999999999998888877553   899999999999999999988877     444699999887743   1123


Q ss_pred             ceeEEeechhhhcCChhh-HHHHHHHHHHcCCCCcEEEEEec--ccCCCce---e-cC---CCCcee-cCHHHHHHHHHh
Q 018970          230 RYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLKEN--IARSGFV---L-DK---EDRSIT-RSDFYFKELFSR  298 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d-~~~~l~~~~~~LkpgG~lii~~~--~~~~~~~---~-d~---~~~~~~-~s~~~l~~l~~~  298 (348)
                      ..++++++..++.++|-+ +...++-+.+++.|||++|.+..  .++-.++   . ++   ...... +|..++.++++.
T Consensus       209 ~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~  288 (311)
T PF12147_consen  209 APTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEA  288 (311)
T ss_pred             CCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHH
Confidence            579999999999999844 55579999999999999998752  2222211   1 11   122222 699999999999


Q ss_pred             cCCeEEEEee
Q 018970          299 CGLHIYKSKD  308 (348)
Q Consensus       299 aGf~~v~~~~  308 (348)
                      +||+-+....
T Consensus       289 aGF~K~~q~I  298 (311)
T PF12147_consen  289 AGFEKIDQRI  298 (311)
T ss_pred             cCCchhhhee
Confidence            9999666443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.08  E-value=9e-10  Score=108.32  Aligned_cols=110  Identities=20%  Similarity=0.111  Sum_probs=82.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--CCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~f  231 (348)
                      +.++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++...|+     ...+.+..+|......  ..++|
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~-----~~~v~~~~~d~~~~~~~~~~~~f  310 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL-----TIKAETKDGDGRGPSQWAENEQF  310 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEecccccccccccccccc
Confidence            56778999999999999999987653 3799999999999999999887544     2224445566554432  34689


Q ss_pred             eEEeec------hhhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          232 DVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       232 D~Ii~~------~~l~~~~~-------~d-------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |.|++.      +++++.++       ++       ...+|+++.++|||||.|++++
T Consensus       311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst  368 (426)
T TIGR00563       311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT  368 (426)
T ss_pred             CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            999952      34554442       11       3679999999999999999986

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.08  E-value=6e-10  Score=108.01  Aligned_cols=109  Identities=17%  Similarity=0.153  Sum_probs=82.4

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD  232 (348)
                      ++.+|||+|||+|.++...+..+..+|+++|+|+.+++.|++++...++.    ..++++.++|+.++.    ...++||
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~~l~~~~~~~~~fD  295 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHHHHHHHHhcCCCCC
Confidence            45789999999999998877666658999999999999999998765431    136889999987752    1235899


Q ss_pred             EEeechhhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~-------~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++....-.-..       .++..+++.+.++|+|||.|+...
T Consensus       296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            9998755321111       135667778899999999988754

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.07  E-value=1.3e-09  Score=107.78  Aligned_cols=108  Identities=18%  Similarity=0.221  Sum_probs=82.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+|||+|..+..++....  ..|+++|+|+.+++.+++++...|+      .++.+.+.|+.++.. .++||
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~~~-~~~fD  320 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSFSP-EEQPD  320 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCccccccc-CCCCC
Confidence            45678999999999999988876532  2799999999999999999877543      358899999888753 36899


Q ss_pred             EEeec------hhhh-------cCChhh-------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQ------WCIG-------HLTDDD-------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~------~~l~-------~~~~~d-------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++-      .++.       +...++       ...+|.++.++|||||.+++++
T Consensus       321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst  377 (445)
T PRK14904        321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT  377 (445)
T ss_pred             EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            99962      1111       112122       3468999999999999999976

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.06  E-value=4e-09  Score=104.27  Aligned_cols=133  Identities=18%  Similarity=0.197  Sum_probs=97.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCc
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR  230 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~  230 (348)
                      ..++.+|||+|||+|.++..++... ..|+++|+|+.|++.|++++...++      .++++.++|+.+..    ..+++
T Consensus       295 ~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~  367 (443)
T PRK13168        295 PQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL------DNVTFYHANLEEDFTDQPWALGG  367 (443)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeChHHhhhhhhhhcCC
Confidence            4566799999999999999998765 4699999999999999998865432      36899999986532    23467


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      ||+|++...-.-     ....++.+.+ ++|+++++++.+..           .+.++.    ..|.+.||++......-
T Consensus       368 fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvSCnp~-----------tlaRDl----~~L~~~gY~l~~i~~~D  426 (443)
T PRK13168        368 FDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVSCNPA-----------TLARDA----GVLVEAGYRLKRAGMLD  426 (443)
T ss_pred             CCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEEeChH-----------HhhccH----HHHhhCCcEEEEEEEec
Confidence            999998665432     2245555555 69999999987432           122332    24457899999988777


Q ss_pred             CCCcc
Q 018970          311 GLPEE  315 (348)
Q Consensus       311 ~~~~~  315 (348)
                      -||..
T Consensus       427 mFP~T  431 (443)
T PRK13168        427 MFPHT  431 (443)
T ss_pred             cCCCC
Confidence            77754

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.06  E-value=9.5e-10  Score=101.34  Aligned_cols=109  Identities=15%  Similarity=0.087  Sum_probs=82.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+|||+|..+..++....  ..|+++|+++.+++.+++++...++      .++.+...|...++...+.||
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~fD  142 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRVFGAAVPKFD  142 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHHhhhhccCCC
Confidence            56778999999999999999887643  2799999999999999999877543      357888888877654446799


Q ss_pred             EEeech------hhhcC-------Chh-------hHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQW------CIGHL-------TDD-------DFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~------~l~~~-------~~~-------d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++..      ++.+-       ..+       ....+|+.+.++|||||+|+.+.
T Consensus       143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            999632      22111       111       12469999999999999998775

>PLN02672 methionine S-methyltransferase

Probab=99.06  E-value=2.3e-09  Score=114.07  Aligned_cols=138  Identities=17%  Similarity=0.151  Sum_probs=97.6

Q ss_pred             CCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCC----------cCCCcceeEEEcCCCCCCC
Q 018970          158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMA----------PDMHKATNFFCVPLQDFTP  226 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~----------~~~~~~i~~~~~d~~~~~~  226 (348)
                      +.+|||+|||+|.++..++.... ..|+++|+|+.+++.|++++...++..          .....+++|.+.|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            45899999999999999998765 379999999999999999986543210          0112468999999876442


Q ss_pred             C-CCceeEEeechhhh--------------cCC------------------hhh----HHHHHHHHHHcCCCCcEEEEEe
Q 018970          227 E-TGRYDVIWVQWCIG--------------HLT------------------DDD----FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       227 ~-~~~fD~Ii~~~~l~--------------~~~------------------~~d----~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      . ...||+|++|...-              |-+                  ++|    +..++..+.++|+|||++++-.
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            2 13699999874311              100                  012    3567788888999999988754


Q ss_pred             cccCCCceecCCCCceecCHHHHH-HHHHhcCCeEEEEeecC
Q 018970          270 NIARSGFVLDKEDRSITRSDFYFK-ELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       270 ~~~~~~~~~d~~~~~~~~s~~~l~-~l~~~aGf~~v~~~~~~  310 (348)
                      ..               ...+.+. ++|++.||+.+..+...
T Consensus       279 G~---------------~q~~~v~~~l~~~~gf~~~~~~~~~  305 (1082)
T PLN02672        279 GG---------------RPGQAVCERLFERRGFRITKLWQTK  305 (1082)
T ss_pred             Cc---------------cHHHHHHHHHHHHCCCCeeEEeeeh
Confidence            22               1234577 69999999988765543

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.03  E-value=7.6e-10  Score=101.24  Aligned_cols=130  Identities=15%  Similarity=0.192  Sum_probs=94.8

Q ss_pred             hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce
Q 018970          135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT  214 (348)
Q Consensus       135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i  214 (348)
                      +....+|++.++.+..    ..+...++|+|||-|..++..-..+...++++|++...++.|+++..+..-......-.+
T Consensus        99 lRnfNNwIKs~LI~~y----~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a  174 (389)
T KOG1975|consen   99 LRNFNNWIKSVLINLY----TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTA  174 (389)
T ss_pred             hhhhhHHHHHHHHHHH----hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhccccee
Confidence            4555667777766543    256678999999999998888878888999999999999999987653210000001235


Q ss_pred             eEEEcCCCC------CCCCCCceeEEeechhhhcC--ChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          215 NFFCVPLQD------FTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       215 ~~~~~d~~~------~~~~~~~fD~Ii~~~~l~~~--~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      .|+++|-..      +++.+.+||+|-|+.++|+.  +.+...-+|+++..+|+|||+||-+
T Consensus       175 ~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT  236 (389)
T KOG1975|consen  175 VFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT  236 (389)
T ss_pred             EEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence            677776543      22333459999999999975  2355778999999999999999975

>TIGR00417 speE spermidine synthase

Probab=99.03  E-value=8.1e-10  Score=102.16  Aligned_cols=110  Identities=16%  Similarity=0.178  Sum_probs=79.5

Q ss_pred             CCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeEE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI  234 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~I  234 (348)
                      .+.+||+||||+|.++..++... ..+|+++|+++.+++.+++.+.....  .-...++++...|..++- ...++||+|
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDvI  149 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDVI  149 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccEE
Confidence            44599999999999999888665 44799999999999999998754210  001245777777765432 123689999


Q ss_pred             eechhhhcCChhh--HHHHHHHHHHcCCCCcEEEEE
Q 018970          235 WVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       235 i~~~~l~~~~~~d--~~~~l~~~~~~LkpgG~lii~  268 (348)
                      ++.......+...  ...+++.+.+.|+|||.+++.
T Consensus       150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            9865432222122  468899999999999999886

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=1.4e-08  Score=86.82  Aligned_cols=123  Identities=17%  Similarity=0.176  Sum_probs=91.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      -.+.+|+|+|||||.++...+..++..|+++|+++++++.++++..+.       ..++.|.++|+.++.   +.+|.++
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------~g~v~f~~~dv~~~~---~~~dtvi  113 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------LGDVEFVVADVSDFR---GKFDTVI  113 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------CCceEEEEcchhhcC---CccceEE
Confidence            445689999999999999998888889999999999999999998762       467999999999886   6799999


Q ss_pred             echhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       236 ~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      +|..|.-... .| ..|+..+.+.-    ..+.+-+.              .-+.+.+++..+.+|+.+....
T Consensus       114 mNPPFG~~~rhaD-r~Fl~~Ale~s----~vVYsiH~--------------a~~~~f~~~~~~~~G~~v~~~~  167 (198)
T COG2263         114 MNPPFGSQRRHAD-RPFLLKALEIS----DVVYSIHK--------------AGSRDFVEKFAADLGGTVTHIE  167 (198)
T ss_pred             ECCCCccccccCC-HHHHHHHHHhh----heEEEeec--------------cccHHHHHHHHHhcCCeEEEEE
Confidence            9887764322 23 23444444432    11111110              0267788999999998877753

>PRK01581 speE spermidine synthase; Validated

Probab=99.03  E-value=9.2e-09  Score=97.40  Aligned_cols=143  Identities=20%  Similarity=0.200  Sum_probs=94.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHh--CCCCCCCcCCCcceeEEEcCCCCCC-CCCCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESL--APENHMAPDMHKATNFFCVPLQDFT-PETGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~--~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f  231 (348)
                      ..+.+||+||||.|..+..+++.. ..+|+++|+++.|++.|++..  ....- ..--..+++++..|..++. ...++|
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~-~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNK-SAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcc-ccCCCCceEEEECcHHHHHHhcCCCc
Confidence            445699999999999999888653 248999999999999999721  11000 0001357889999887743 334689


Q ss_pred             eEEeechhhh---cCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          232 DVIWVQWCIG---HLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       232 D~Ii~~~~l~---~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      |+|++...-.   ....-.-..+++.+.+.|+|||++++.....   +  .     ...-...+.+.++++|+.+.....
T Consensus       228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp---~--~-----~~~~~~~i~~tL~~af~~v~~y~t  297 (374)
T PRK01581        228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP---A--D-----APLVYWSIGNTIEHAGLTVKSYHT  297 (374)
T ss_pred             cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh---h--h-----hHHHHHHHHHHHHHhCCceEEEEE
Confidence            9999863211   1111123579999999999999998864211   1  0     000112267889999998776544


Q ss_pred             c
Q 018970          309 Q  309 (348)
Q Consensus       309 ~  309 (348)
                      .
T Consensus       298 ~  298 (374)
T PRK01581        298 I  298 (374)
T ss_pred             e
Confidence            3

>PLN02366 spermidine synthase

Probab=99.02  E-value=2.8e-09  Score=99.91  Aligned_cols=111  Identities=18%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCcee
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD  232 (348)
                      +++.+||+||||.|.++..+++.. ..+|+.+|+++.+++.+++.+...+..  -...+++++..|...+.  .+.++||
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--~~dpRv~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG--FDDPRVNLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc--cCCCceEEEEChHHHHHhhccCCCCC
Confidence            456799999999999999998653 247999999999999999987642110  01357999999975542  1236899


Q ss_pred             EEeechhhhcCChhh--HHHHHHHHHHcCCCCcEEEEE
Q 018970          233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d--~~~~l~~~~~~LkpgG~lii~  268 (348)
                      +|++-..-.+.+...  -..+++.+.+.|+|||++++.
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            999854333222111  357899999999999998764

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.01  E-value=2e-09  Score=105.87  Aligned_cols=109  Identities=13%  Similarity=0.089  Sum_probs=83.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~--~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f  231 (348)
                      +.++.+|||+|||+|..+..++...  ...|+++|+|+.+++.+++++...|+      .++.+...|..+++ ...++|
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~~~~f  308 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYVQDTF  308 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhhhccC
Confidence            5677899999999999999988764  23799999999999999999877543      35788889988765 334689


Q ss_pred             eEEeechh---hhcC---C-------hh-------hHHHHHHHHHHcCCCCcEEEEEe
Q 018970          232 DVIWVQWC---IGHL---T-------DD-------DFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       232 D~Ii~~~~---l~~~---~-------~~-------d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |.|++...   +..+   +       .+       ....+|.++.+.|||||.++.+.
T Consensus       309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  366 (431)
T PRK14903        309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST  366 (431)
T ss_pred             CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99996321   2211   1       11       13567999999999999998876

>PRK03612 spermidine synthase; Provisional

Probab=99.00  E-value=2.3e-09  Score=107.78  Aligned_cols=136  Identities=19%  Similarity=0.193  Sum_probs=92.7

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHH--hCCCCCCCcCCCcceeEEEcCCCCCC-CCCCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFT-PETGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~--~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f  231 (348)
                      +++.+|||||||+|..+..+++... .+|+++|+++++++.++++  +........ ..++++++..|..++. ..+++|
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~-~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGAL-DDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcccc-CCCceEEEEChHHHHHHhCCCCC
Confidence            4567999999999999999986543 5899999999999999984  221100000 0356889999987743 224689


Q ss_pred             eEEeechhhhcCCh---hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCe
Q 018970          232 DVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLH  302 (348)
Q Consensus       232 D~Ii~~~~l~~~~~---~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~  302 (348)
                      |+|++.......+.   -...++++.+.+.|||||.+++.....   + .+      ......+.+.+++.||.
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~---~-~~------~~~~~~i~~~l~~~gf~  438 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP---Y-FA------PKAFWSIEATLEAAGLA  438 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc---c-cc------hHHHHHHHHHHHHcCCE
Confidence            99999754332221   012468999999999999998864211   1 00      01123577889999993

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=3.7e-09  Score=94.45  Aligned_cols=126  Identities=20%  Similarity=0.187  Sum_probs=98.7

Q ss_pred             cCCCCCcEEEEeccccHHHHHHHHh-CC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCce
Q 018970          154 RNNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY  231 (348)
Q Consensus       154 ~~~~~~~VLDvGcG~G~~~~~la~~-~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  231 (348)
                      ++.++.+|||.|.|+|.++.+|+.. +. .+|+.+|+-++..+.|++|+...++     ..++++...|+.+...+ ..|
T Consensus        91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----~d~v~~~~~Dv~~~~~~-~~v  164 (256)
T COG2519          91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----GDRVTLKLGDVREGIDE-EDV  164 (256)
T ss_pred             CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----ccceEEEeccccccccc-ccc
Confidence            3789999999999999999999853 33 2899999999999999999988765     45588888898887665 489


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      |+|+.     .++  ++-.++.++.++|||||.+++..+..+              ..+...+.+++.||.-++.
T Consensus       165 Dav~L-----Dmp--~PW~~le~~~~~Lkpgg~~~~y~P~ve--------------Qv~kt~~~l~~~g~~~ie~  218 (256)
T COG2519         165 DAVFL-----DLP--DPWNVLEHVSDALKPGGVVVVYSPTVE--------------QVEKTVEALRERGFVDIEA  218 (256)
T ss_pred             CEEEE-----cCC--ChHHHHHHHHHHhCCCcEEEEEcCCHH--------------HHHHHHHHHHhcCccchhh
Confidence            99986     344  777999999999999999998764321              1122445566668776663

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.98  E-value=4.3e-09  Score=104.09  Aligned_cols=135  Identities=13%  Similarity=0.105  Sum_probs=93.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~--~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~f  231 (348)
                      +.++.+|||+|||+|..+..++...  ...|+++|+++.+++.+++++...|+      .++.+.+.|+.++.. -.++|
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~~f  321 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKFAEKF  321 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchhcccC
Confidence            4567899999999999999998764  23799999999999999999877544      248899999877641 12689


Q ss_pred             eEEeechhh------hcCC-------hhh-------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970          232 DVIWVQWCI------GHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY  291 (348)
Q Consensus       232 D~Ii~~~~l------~~~~-------~~d-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~  291 (348)
                      |+|++....      .+-+       ..+       ...+++.+.++|||||.|+.+.-.....           -....
T Consensus       322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-----------Ene~v  390 (444)
T PRK14902        322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKE-----------ENEEV  390 (444)
T ss_pred             CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChh-----------hhHHH
Confidence            999975321      1111       111       2468999999999999998765221100           12334


Q ss_pred             HHHHHHhc-CCeEEEE
Q 018970          292 FKELFSRC-GLHIYKS  306 (348)
Q Consensus       292 l~~l~~~a-Gf~~v~~  306 (348)
                      +...+++. +|+++..
T Consensus       391 v~~~l~~~~~~~~~~~  406 (444)
T PRK14902        391 IEAFLEEHPEFELVPL  406 (444)
T ss_pred             HHHHHHhCCCcEEecc
Confidence            55566665 4776553

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.96  E-value=2.5e-09  Score=99.01  Aligned_cols=112  Identities=15%  Similarity=0.171  Sum_probs=84.8

Q ss_pred             CCcEEEEeccccH----HHHHHHHhC---C-C-cEEEEcCCHHHHHHHHHHh------------------CCC-----CC
Q 018970          158 HLVALDCGSGIGR----ITKNLLIRY---F-N-EVDLLEPVSHFLDAARESL------------------APE-----NH  205 (348)
Q Consensus       158 ~~~VLDvGcG~G~----~~~~la~~~---~-~-~v~~vD~S~~~l~~a~~~~------------------~~~-----~~  205 (348)
                      ..+|+..||++|.    ++..+.+..   . . +|+|+|+|+.+|+.|++-.                  ...     +.
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            4799999999995    333333321   1 1 6999999999999998742                  100     00


Q ss_pred             --CCcCCCcceeEEEcCCCCCCCC-CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          206 --MAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       206 --~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                        ........+.|...|+.+.+++ .+.||+|+|.+++.|+.++....+++++++.|+|||+|++..
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence              1122346789999999875432 478999999999999998889999999999999999998864

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.96  E-value=3.8e-09  Score=93.03  Aligned_cols=105  Identities=16%  Similarity=0.115  Sum_probs=78.9

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~Ii  235 (348)
                      ++.+|||+|||+|.++..++.++..+|+++|.++.+++.+++++...+.      .++.+.+.|+.++. ...++||+|+
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D~~~~l~~~~~~fDlV~  126 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTNALSFLAQPGTPHNVVF  126 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEchHHHHHhhcCCCceEEE
Confidence            4569999999999999977767777899999999999999998876432      25888888886632 2234799999


Q ss_pred             echhhhcCChhhHHHHHHHHHH--cCCCCcEEEEEec
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKEN  270 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~--~LkpgG~lii~~~  270 (348)
                      +...+..-   -...+++.+..  +|+|+|++++..+
T Consensus       127 ~DPPy~~g---~~~~~l~~l~~~~~l~~~~iv~ve~~  160 (199)
T PRK10909        127 VDPPFRKG---LLEETINLLEDNGWLADEALIYVESE  160 (199)
T ss_pred             ECCCCCCC---hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence            99885431   23345555544  4899998888754

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.94  E-value=5.1e-09  Score=95.12  Aligned_cols=153  Identities=15%  Similarity=0.286  Sum_probs=102.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCC-------------cC---------CCc-
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA-------------PD---------MHK-  212 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~-------------~~---------~~~-  212 (348)
                      .++.++||||||+-..-..-+...+.+++..|.++..++..++.+.+.+-.+             ..         ... 
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            3467899999999666544455677799999999999998888766542211             00         001 


Q ss_pred             ceeEEEcCCCCCCC-C-----CCceeEEeechhhhcCCh--hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCC-
Q 018970          213 ATNFFCVPLQDFTP-E-----TGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDR-  283 (348)
Q Consensus       213 ~i~~~~~d~~~~~~-~-----~~~fD~Ii~~~~l~~~~~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~-  283 (348)
                      --.+..+|+...++ .     +.+||+|++..+++.+..  +....+++++.++|||||.|++........+....... 
T Consensus       135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~  214 (256)
T PF01234_consen  135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFP  214 (256)
T ss_dssp             EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE
T ss_pred             hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecc
Confidence            12355667766442 1     135999999999997753  66888999999999999999998877665554443321 


Q ss_pred             ceecCHHHHHHHHHhcCCeEEEEee
Q 018970          284 SITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       284 ~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      .+..+.+.+++.++++||.+.....
T Consensus       215 ~l~l~ee~v~~al~~aG~~i~~~~~  239 (256)
T PF01234_consen  215 CLPLNEEFVREALEEAGFDIEDLEK  239 (256)
T ss_dssp             ---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred             cccCCHHHHHHHHHHcCCEEEeccc
Confidence            2236899999999999999998884

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.93  E-value=2.5e-09  Score=94.53  Aligned_cols=113  Identities=18%  Similarity=0.260  Sum_probs=86.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------CCC
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET  228 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~  228 (348)
                      ++.+||||||++|+.+.+++...+.  .|+.+|.++...+.|++.+...|+     ..++++..+|+.+.-      .+.
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~~~gda~~~l~~l~~~~~~  119 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEVIEGDALEVLPELANDGEE  119 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEEEES-HHHHHHHHHHTTTT
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEEEEeccHhhHHHHHhccCC
Confidence            4579999999999999999976543  899999999999999999987655     568999999886531      113


Q ss_pred             CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC
Q 018970          229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK  280 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~  280 (348)
                      ++||+|++-..     ..+...+++.+.++|+|||.+++-.... .+.+.+.
T Consensus       120 ~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l~-~G~V~~~  165 (205)
T PF01596_consen  120 GQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVLW-RGSVADP  165 (205)
T ss_dssp             TSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTTG-GGGGGST
T ss_pred             CceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEEccccc-cceecCc
Confidence            68999997543     2367788999999999999887755443 4444443

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.93  E-value=3.9e-08  Score=89.92  Aligned_cols=150  Identities=19%  Similarity=0.191  Sum_probs=109.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC---C-------------------------CCCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP---E-------------------------NHMA  207 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~---~-------------------------~~~~  207 (348)
                      ..+.+||--|||-|+++..++..++. +.+.|.|--|+-..+-.+..   .                         ...+
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            44578999999999999999999886 99999999998665442221   0                         0000


Q ss_pred             ------cCCCcceeEEEcCCCCCCCCC---CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee
Q 018970          208 ------PDMHKATNFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL  278 (348)
Q Consensus       208 ------~~~~~~i~~~~~d~~~~~~~~---~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~  278 (348)
                            .....+.....+|+.++-.++   ++||+|+.++.+...+  ++..+|+.+.++|||||+.|-..+..-+....
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~--Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~  211 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE--NIIEYIETIEHLLKPGGYWINFGPLLYHFEPM  211 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH--HHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence                  011245667777877765444   7999999998777655  89999999999999999777655443211111


Q ss_pred             -cCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          279 -DKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       279 -d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                       ...+.++..+.+++..+++..||+++....
T Consensus       212 ~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  212 SIPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence             123445778999999999999999988665

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.93  E-value=2.5e-08  Score=94.24  Aligned_cols=130  Identities=13%  Similarity=0.083  Sum_probs=91.8

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~Ii  235 (348)
                      ++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|++++...++      .+++|.+.|+.++.. ..+.||+|+
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~~~~~~~D~Vv  245 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFATAQGEVPDLVL  245 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHHhcCCCCeEEE
Confidence            45789999999999999999766 4699999999999999999876433      368999999987642 235799999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCcc
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEE  315 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~~  315 (348)
                      +...-.-+.    ..+++.+ ..++|++.++++.+...           +.+   .+..+   .||++......--||..
T Consensus       246 ~dPPr~G~~----~~~~~~l-~~~~~~~ivyvsc~p~t-----------~~r---d~~~l---~~y~~~~~~~~DmFP~T  303 (315)
T PRK03522        246 VNPPRRGIG----KELCDYL-SQMAPRFILYSSCNAQT-----------MAK---DLAHL---PGYRIERVQLFDMFPHT  303 (315)
T ss_pred             ECCCCCCcc----HHHHHHH-HHcCCCeEEEEECCccc-----------chh---HHhhc---cCcEEEEEEEeccCCCC
Confidence            885522211    2233333 33688888888864321           112   23333   58999888777777754

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.92  E-value=1.1e-08  Score=96.24  Aligned_cols=147  Identities=11%  Similarity=0.041  Sum_probs=92.6

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCC-CCCCcCCCcceeEEE-cCCCCCC----CCCC
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFC-VPLQDFT----PETG  229 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~-~~~~~~~~~~i~~~~-~d~~~~~----~~~~  229 (348)
                      .+.+|||||||+|.+...++.+.+. .++++|+++.+++.|++++... ++     ..++.+.. .+..++.    .+.+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----~~~I~~~~~~~~~~i~~~i~~~~~  188 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----NGAIRLRLQKDSKAIFKGIIHKNE  188 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----cCcEEEEEccchhhhhhcccccCC
Confidence            5679999999999888877766444 7999999999999999998765 33     34566653 2332221    2346


Q ss_pred             ceeEEeechhhhcCChhhH---HHHHHH----------------HHHcCCCCcEEEEEecccCCCceecCCCCcee----
Q 018970          230 RYDVIWVQWCIGHLTDDDF---VSFFKR----------------AKVGLKPGGFFVLKENIARSGFVLDKEDRSIT----  286 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~---~~~l~~----------------~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~----  286 (348)
                      .||+|+|+..++.-..+..   ..-.+.                ..+++.+||.+-+...+......+.....-++    
T Consensus       189 ~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~  268 (321)
T PRK11727        189 RFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVS  268 (321)
T ss_pred             ceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEee
Confidence            8999999999886443211   111222                23445677776665433322211111111111    


Q ss_pred             --cCHHHHHHHHHhcCCeEEEEee
Q 018970          287 --RSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       287 --~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                        -+...+.+.+++.|...+...+
T Consensus       269 kk~~l~~l~~~L~~~~~~~~~~~e  292 (321)
T PRK11727        269 KKENLPPLYRALKKVGAVEVKTIE  292 (321)
T ss_pred             ccCCHHHHHHHHHHcCCceEEEEE
Confidence              3778899999999996555433

>PLN02476 O-methyltransferase

Probab=98.92  E-value=1.1e-08  Score=94.10  Aligned_cols=114  Identities=17%  Similarity=0.136  Sum_probs=87.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------CC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE  227 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~  227 (348)
                      .++.+|||||+|+|+.+.+++.....  .|+.+|.++++.+.|++++...|+     ..++++..+|+.+.-      ..
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----~~~I~li~GdA~e~L~~l~~~~~  191 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----SHKVNVKHGLAAESLKSMIQNGE  191 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhccc
Confidence            45679999999999999999864332  699999999999999999988766     457999999886531      11


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK  280 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~  280 (348)
                      .++||+|++-..     ..+...+++.+.++|+|||.|++ ++....+.+.+.
T Consensus       192 ~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~-DNvL~~G~V~d~  238 (278)
T PLN02476        192 GSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVM-DNVLWHGRVADP  238 (278)
T ss_pred             CCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEE-ecCccCCcccCc
Confidence            368999997443     24678899999999999999776 555545554443

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.90  E-value=7.7e-09  Score=91.64  Aligned_cols=124  Identities=22%  Similarity=0.322  Sum_probs=92.0

Q ss_pred             hhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCC-C-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcc
Q 018970          136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA  213 (348)
Q Consensus       136 ~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~  213 (348)
                      +..-.+|..++.       ...+.+|||||.+.|+.+.+++...+ + +++.+|.++++.+.|++++.+.|+     ...
T Consensus        45 ~e~g~~L~~L~~-------~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----~~~  112 (219)
T COG4122          45 PETGALLRLLAR-------LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----DDR  112 (219)
T ss_pred             hhHHHHHHHHHH-------hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----cce
Confidence            334456666554       34678999999999999999998766 3 799999999999999999998776     445


Q ss_pred             eeEEE-cCCCCC-C-CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce
Q 018970          214 TNFFC-VPLQDF-T-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV  277 (348)
Q Consensus       214 i~~~~-~d~~~~-~-~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~  277 (348)
                      +.... +|..+. . ...++||+|++-..     ..+...++..+.++|+|||.+++- |+..++..
T Consensus       113 i~~~~~gdal~~l~~~~~~~fDliFIDad-----K~~yp~~le~~~~lLr~GGliv~D-Nvl~~G~v  173 (219)
T COG4122         113 IELLLGGDALDVLSRLLDGSFDLVFIDAD-----KADYPEYLERALPLLRPGGLIVAD-NVLFGGRV  173 (219)
T ss_pred             EEEEecCcHHHHHHhccCCCccEEEEeCC-----hhhCHHHHHHHHHHhCCCcEEEEe-ecccCCcc
Confidence            66776 355442 2 23589999996332     235678999999999999987764 44444443

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.89  E-value=5.3e-09  Score=91.91  Aligned_cols=104  Identities=18%  Similarity=0.187  Sum_probs=79.5

Q ss_pred             cEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCCceeEEe
Q 018970          160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVIW  235 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~Ii  235 (348)
                      -+||||||.|.++..+|...++ .+.|+|++...+..+.+++...++      .|+.+.++|+..+-   ++++++|-|+
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~~da~~~l~~~~~~~~v~~i~   93 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL------KNVRFLRGDARELLRRLFPPGSVDRIY   93 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT------SSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc------cceEEEEccHHHHHhhcccCCchheEE
Confidence            7999999999999999999887 899999999999999887765443      68999999988732   3458999999


Q ss_pred             echhhhcCChhh------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          236 VQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       236 ~~~~l~~~~~~d------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ++..=-+.....      -..+++.+.++|+|||.|.+.+
T Consensus        94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T  133 (195)
T PF02390_consen   94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT  133 (195)
T ss_dssp             EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence            865533332111      2579999999999999999976

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.87  E-value=3e-08  Score=97.79  Aligned_cols=132  Identities=17%  Similarity=0.099  Sum_probs=92.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCc
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR  230 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~  230 (348)
                      ..++.+|||+|||+|.++..++... ..|+++|+|+.|++.|++++...++      .+++|..+|+.++.    ...++
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l~~~~~~~~~  362 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVLPKQPWAGQI  362 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHHHHHHhcCCC
Confidence            4566799999999999999988654 4699999999999999998865432      46899999986531    22357


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      ||+|++...=..+    ...+++.+.+ ++|++.++++.+..               +...-.+.|.+.||++......-
T Consensus       363 ~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvsc~p~---------------tlard~~~l~~~gy~~~~~~~~D  422 (431)
T TIGR00479       363 PDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVSCNPA---------------TLARDLEFLCKEGYGITWVQPVD  422 (431)
T ss_pred             CCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEcCCHH---------------HHHHHHHHHHHCCeeEEEEEEec
Confidence            9999975542221    2355665554 78999888875311               11222345677899987766544


Q ss_pred             CCC
Q 018970          311 GLP  313 (348)
Q Consensus       311 ~~~  313 (348)
                      -||
T Consensus       423 mFP  425 (431)
T TIGR00479       423 MFP  425 (431)
T ss_pred             cCC
Confidence            444

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.85  E-value=2e-08  Score=90.95  Aligned_cols=127  Identities=17%  Similarity=0.153  Sum_probs=92.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC---CC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~  229 (348)
                      +.|+.+|||.|.|+|.++..|+... +. +|+..|..+...+.|++++...|+     ..++++...|+.+..+.   ..
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~~Dv~~~g~~~~~~~  112 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHHRDVCEEGFDEELES  112 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEES-GGCG--STT-TT
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEecceecccccccccC
Confidence            7899999999999999999998653 32 899999999999999999988776     56899999998542221   26


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcC-CCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~L-kpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      .+|.|+.     .++  ++-.++..+.++| ||||.|++.-++.+              ......+.+++.||..++..
T Consensus       113 ~~DavfL-----Dlp--~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--------------Qv~~~~~~L~~~gf~~i~~~  170 (247)
T PF08704_consen  113 DFDAVFL-----DLP--DPWEAIPHAKRALKKPGGRICCFSPCIE--------------QVQKTVEALREHGFTDIETV  170 (247)
T ss_dssp             SEEEEEE-----ESS--SGGGGHHHHHHHE-EEEEEEEEEESSHH--------------HHHHHHHHHHHTTEEEEEEE
T ss_pred             cccEEEE-----eCC--CHHHHHHHHHHHHhcCCceEEEECCCHH--------------HHHHHHHHHHHCCCeeeEEE
Confidence            7999986     344  5567899999999 89999988764431              12234567778899887743

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.84  E-value=2.8e-09  Score=91.83  Aligned_cols=154  Identities=19%  Similarity=0.247  Sum_probs=105.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ..+.++||+|+|.|.++..++ ..+.+|.+.+.|..|....+.+-               |.+....++...+-+||+|.
T Consensus       111 ~~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~---------------ynVl~~~ew~~t~~k~dli~  174 (288)
T KOG3987|consen  111 QEPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKN---------------YNVLTEIEWLQTDVKLDLIL  174 (288)
T ss_pred             CCCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcC---------------CceeeehhhhhcCceeehHH
Confidence            445799999999999999876 55668999999999999887542               12233333433345799999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCC-CcEEEEEecccCCCcee--------------cCCCCceecCHHHHHHHHHhcC
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKP-GGFFVLKENIARSGFVL--------------DKEDRSITRSDFYFKELFSRCG  300 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~Lkp-gG~lii~~~~~~~~~~~--------------d~~~~~~~~s~~~l~~l~~~aG  300 (348)
                      |-+.+...-  ++-++++.+..+|.| +|..|++-...-..++.              .....++.-....+.++|+.+|
T Consensus       175 clNlLDRc~--~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g  252 (288)
T KOG3987|consen  175 CLNLLDRCF--DPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCG  252 (288)
T ss_pred             HHHHHHhhc--ChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcC
Confidence            999998766  788999999999999 89888864322222211              1111122122334678899999


Q ss_pred             CeEEEEeecCCCCcc-------ceEEEEEEEeec
Q 018970          301 LHIYKSKDQKGLPEE-------LFAVKMYALTAE  327 (348)
Q Consensus       301 f~~v~~~~~~~~~~~-------l~~v~~~~l~~~  327 (348)
                      |.+..+.+.+..++.       +.+-.+|.|+|+
T Consensus       253 ~~veawTrlPYLCEGDm~ns~Y~L~Daifvlkp~  286 (288)
T KOG3987|consen  253 YRVEAWTRLPYLCEGDMHNSFYWLIDAIFVLKPK  286 (288)
T ss_pred             chhhhhhcCCeecccccccceEEecceEEEecCC
Confidence            998888777665542       235566666654

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.83  E-value=3.5e-09  Score=102.73  Aligned_cols=179  Identities=17%  Similarity=0.162  Sum_probs=102.0

Q ss_pred             hhhccccccccccccccCcccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCc--EEEE
Q 018970          109 GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE--VDLL  186 (348)
Q Consensus       109 ~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~--v~~v  186 (348)
                      +.+-|-....+.-.+-+| +.++........+.+..++.....   ...-..+||+|||.|.++.+|++++...  +..-
T Consensus        73 ~~qnWv~~~gd~~~FPgg-gt~F~~Ga~~Yid~i~~~~~~~~~---~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~  148 (506)
T PF03141_consen   73 ADQNWVRVEGDKFRFPGG-GTMFPHGADHYIDQIAEMIPLIKW---GGGIRTALDVGCGVASFGAYLLERNVTTMSFAPN  148 (506)
T ss_pred             ccccceeecCCEEEeCCC-CccccCCHHHHHHHHHHHhhcccc---CCceEEEEeccceeehhHHHHhhCCceEEEcccc
Confidence            345555443332222222 334433333333445555432111   1223468999999999999999886641  2223


Q ss_pred             cCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970          187 EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV  266 (348)
Q Consensus       187 D~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li  266 (348)
                      |..+.++..|-++    |+       -..+-...-..+|+++++||+|.|+.++......+ ..+|-++.|+|+|||+++
T Consensus       149 d~~~~qvqfaleR----Gv-------pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv  216 (506)
T PF03141_consen  149 DEHEAQVQFALER----GV-------PAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFV  216 (506)
T ss_pred             cCCchhhhhhhhc----Cc-------chhhhhhccccccCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEE
Confidence            4445566666443    11       11111223467888899999999999988766533 468899999999999999


Q ss_pred             EEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          267 LKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       267 i~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      .+.....     ...+....-.-+.+.++.+...++.+....
T Consensus       217 ~S~ppv~-----~r~~~~~~~~~~~~~~l~~~lCW~~va~~~  253 (506)
T PF03141_consen  217 LSGPPVY-----QRTDEDLEEEWNAMEDLAKSLCWKKVAEKG  253 (506)
T ss_pred             ecCCccc-----ccchHHHHHHHHHHHHHHHHHHHHHheeeC
Confidence            9864332     000111111223456666666676665443

; GO: 0008168 methyltransferase activity

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.81  E-value=1.2e-08  Score=94.92  Aligned_cols=107  Identities=20%  Similarity=0.168  Sum_probs=83.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +-.+..|||||||+|.++...++.|...|+++|.|. +++.|++.+...++     ...+++..+.++++..+..++|+|
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~-----~~ii~vi~gkvEdi~LP~eKVDiI  131 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGL-----EDVITVIKGKVEDIELPVEKVDII  131 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCc-----cceEEEeecceEEEecCccceeEE
Confidence            345679999999999999999988988999999875 55999998877655     456899999888876666799999


Q ss_pred             eechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEE
Q 018970          235 WVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       235 i~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      ++-|+=+.+-- .=+..+|-.=-+.|+|||.++=
T Consensus       132 vSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  132 VSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             eehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence            98665443321 1245566666789999999874

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.81  E-value=4.5e-08  Score=81.81  Aligned_cols=117  Identities=17%  Similarity=0.185  Sum_probs=93.5

Q ss_pred             HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeE
Q 018970          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (348)
Q Consensus       139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~  216 (348)
                      ..++.+.+...+.   +..+.-|||+|.|||-++..++.++..  .++++|.|++......+.+..           +++
T Consensus        33 Ss~lA~~M~s~I~---pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~-----------~~i   98 (194)
T COG3963          33 SSILARKMASVID---PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG-----------VNI   98 (194)
T ss_pred             cHHHHHHHHhccC---cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC-----------ccc
Confidence            3444444444433   566778999999999999999998765  899999999999999988765           457


Q ss_pred             EEcCCCCCC-----CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          217 FCVPLQDFT-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       217 ~~~d~~~~~-----~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +.+|+.++.     ..+..||.|+|.-.+-.++-....++++.+...|.+||.++-..
T Consensus        99 i~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963          99 INGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             cccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence            777776654     23457999999999998887777889999999999999988654

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.81  E-value=1.6e-07  Score=82.27  Aligned_cols=142  Identities=18%  Similarity=0.216  Sum_probs=97.0

Q ss_pred             hHHHHHHHHhhhcCC-ccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeE
Q 018970          138 SEAFLQMLLSDRFPN-ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (348)
Q Consensus       138 ~~~~l~~~l~~~l~~-~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~  216 (348)
                      +..++..++...... .......++|||||=+......- ...+ .|+.+|.++.                     .-.+
T Consensus        31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~-~~~f-dvt~IDLns~---------------------~~~I   87 (219)
T PF11968_consen   31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST-SGWF-DVTRIDLNSQ---------------------HPGI   87 (219)
T ss_pred             hhHHHHHHhhhhccccccccccceEEeecccCCCCcccc-cCce-eeEEeecCCC---------------------CCCc
Confidence            344555555443321 11223479999999755443321 1234 4999997641                     2335


Q ss_pred             EEcCCCCCCC---CCCceeEEeechhhhcCCh-hhHHHHHHHHHHcCCCCcE-----EEEEecccCCCceecCCCCceec
Q 018970          217 FCVPLQDFTP---ETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGF-----FVLKENIARSGFVLDKEDRSITR  287 (348)
Q Consensus       217 ~~~d~~~~~~---~~~~fD~Ii~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~-----lii~~~~~~~~~~~d~~~~~~~~  287 (348)
                      ...|+.+.|.   +.++||+|.++.+|.++++ ...-.+++++++.|+|+|.     |++.-+..-       ..++-..
T Consensus        88 ~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C-------v~NSRy~  160 (219)
T PF11968_consen   88 LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC-------VTNSRYM  160 (219)
T ss_pred             eeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH-------hhccccc
Confidence            6677777664   3578999999999999996 6677899999999999999     777653321       1233335


Q ss_pred             CHHHHHHHHHhcCCeEEEEeec
Q 018970          288 SDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       288 s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      +.+.|..+++..||..+.....
T Consensus       161 ~~~~l~~im~~LGf~~~~~~~~  182 (219)
T PF11968_consen  161 TEERLREIMESLGFTRVKYKKS  182 (219)
T ss_pred             CHHHHHHHHHhCCcEEEEEEec
Confidence            7889999999999999987654

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.80  E-value=1.3e-08  Score=87.79  Aligned_cols=110  Identities=18%  Similarity=0.101  Sum_probs=73.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~  229 (348)
                      ..++.+|||+|||+|..+..++.. +...|+..|.++ .++.++.++...+.   ....++.+...|+.+-.    .+.+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~~~  118 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLEPH  118 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-S
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccccc
Confidence            456779999999999999988866 455899999998 89999888765431   11356777777775521    2336


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +||+|+++.+++.-  +....+++.+.++|+|+|.+++...
T Consensus       119 ~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~  157 (173)
T PF10294_consen  119 SFDVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYK  157 (173)
T ss_dssp             SBSEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred             cCCEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            89999999999973  4788999999999999998777653

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.80  E-value=6.4e-08  Score=93.62  Aligned_cols=130  Identities=13%  Similarity=0.097  Sum_probs=93.6

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~Ii  235 (348)
                      ++.+|||+|||+|.++..++..+ ..|+++|+|+.+++.|++++...++      .+++|.+.|+.++.. ..++||+|+
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~vi  305 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDSAKFATAQMSAPELVL  305 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHHhcCCCCCEEE
Confidence            34689999999999999998665 4699999999999999999866432      368999999876432 124699999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCcc
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEE  315 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~~  315 (348)
                      +...-..+.    ..+++.+.+ ++|++.++++.+..           .+.++   +..+   .||++.......-||..
T Consensus       306 ~DPPr~G~~----~~~l~~l~~-~~p~~ivyvsc~p~-----------TlaRD---l~~L---~gy~l~~~~~~DmFPqT  363 (374)
T TIGR02085       306 VNPPRRGIG----KELCDYLSQ-MAPKFILYSSCNAQ-----------TMAKD---IAEL---SGYQIERVQLFDMFPHT  363 (374)
T ss_pred             ECCCCCCCc----HHHHHHHHh-cCCCeEEEEEeCHH-----------HHHHH---HHHh---cCceEEEEEEeccCCCC
Confidence            987644322    345555543 79999999986421           11122   2223   69999988877777753

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.80  E-value=4.7e-08  Score=88.75  Aligned_cols=124  Identities=18%  Similarity=0.203  Sum_probs=91.8

Q ss_pred             HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeE
Q 018970          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (348)
Q Consensus       139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~  216 (348)
                      -.+|..++.       ..+..+|||||+++|+.+.+++...+.  +|+.+|.++...+.|++.+...|+     ..++++
T Consensus        68 g~lL~~l~~-------~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----~~~I~~  135 (247)
T PLN02589         68 GQFLNMLLK-------LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----AHKIDF  135 (247)
T ss_pred             HHHHHHHHH-------HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEE
Confidence            355555554       234579999999999999999865432  799999999999999999988766     467999


Q ss_pred             EEcCCCCCCC-------CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC
Q 018970          217 FCVPLQDFTP-------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK  280 (348)
Q Consensus       217 ~~~d~~~~~~-------~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~  280 (348)
                      ..+++.+.-.       ..++||+|++-.-     .+....+++.+.+.|+|||.|++ ++....+.+.+.
T Consensus       136 ~~G~a~e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~-DNvl~~G~v~~~  200 (247)
T PLN02589        136 REGPALPVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY-DNTLWNGSVVAP  200 (247)
T ss_pred             EeccHHHHHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE-cCCCCCCcccCc
Confidence            9998766311       1268999996433     23567888999999999999665 555555554443

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.78  E-value=6.2e-08  Score=88.73  Aligned_cols=113  Identities=19%  Similarity=0.288  Sum_probs=85.6

Q ss_pred             CCCcEEEEeccccH----HHHHHHHhCC-----C-cEEEEcCCHHHHHHHHHHhCC-----CCCC---------------
Q 018970          157 QHLVALDCGSGIGR----ITKNLLIRYF-----N-EVDLLEPVSHFLDAARESLAP-----ENHM---------------  206 (348)
Q Consensus       157 ~~~~VLDvGcG~G~----~~~~la~~~~-----~-~v~~vD~S~~~l~~a~~~~~~-----~~~~---------------  206 (348)
                      ...+|+-.||++|.    ++..+.+.+.     . .|+++|+|..+|+.|+.-.=.     .++.               
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            47799999999994    4444444432     2 799999999999999762211     1110               


Q ss_pred             ---CcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          207 ---APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       207 ---~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                         .......+.|...|+.+-.+..+.||+|+|.+|+.++..+....++++++..|+|||+|++..
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence               012235788888888776633478999999999999998888999999999999999999964

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=5.9e-07  Score=76.21  Aligned_cols=141  Identities=16%  Similarity=0.068  Sum_probs=98.5

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ..-+||||||+|..+..|++....  .+.++|++|.+++...+.+..+       ..+++..+.|+.+--.+ ++.|+++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-------~~~~~~V~tdl~~~l~~-~~VDvLv  115 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-------RVHIDVVRTDLLSGLRN-ESVDVLV  115 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-------CCccceeehhHHhhhcc-CCccEEE
Confidence            557999999999999988876433  6889999999999987776543       34577888888764434 7899998


Q ss_pred             echhhhcCCh-------------------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHH
Q 018970          236 VQWCIGHLTD-------------------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELF  296 (348)
Q Consensus       236 ~~~~l~~~~~-------------------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~  296 (348)
                      .+...---++                   +-...++..+-.+|.|.|++++.....              -...++.+++
T Consensus       116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~--------------N~p~ei~k~l  181 (209)
T KOG3191|consen  116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA--------------NKPKEILKIL  181 (209)
T ss_pred             ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh--------------cCHHHHHHHH
Confidence            7644322211                   114567778888999999999875332              1345677799


Q ss_pred             HhcCCeEEEEeecCCCCccceEEE
Q 018970          297 SRCGLHIYKSKDQKGLPEELFAVK  320 (348)
Q Consensus       297 ~~aGf~~v~~~~~~~~~~~l~~v~  320 (348)
                      +.-||..........-.+.++-.+
T Consensus       182 ~~~g~~~~~~~~Rk~~~E~l~ilk  205 (209)
T KOG3191|consen  182 EKKGYGVRIAMQRKAGGETLSILK  205 (209)
T ss_pred             hhcccceeEEEEEecCCceEEEEE
Confidence            999998777555443333344333

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.75  E-value=5.4e-08  Score=87.34  Aligned_cols=134  Identities=19%  Similarity=0.140  Sum_probs=78.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHH-HHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~-a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      .++.+|||+|||+|.++..+++.+...|+++|+++.|+.. .++...-..+   . ..|+.  ..+.+++...-..+|++
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~---~-~~ni~--~~~~~~~~~d~~~~Dvs  147 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVL---E-RTNIR--YVTPADIFPDFATFDVS  147 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEe---e-cCCcc--cCCHhHcCCCceeeeEE
Confidence            3566899999999999999998877789999999988876 3322110000   0 01122  22222222222468887


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe-ccc--------CCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE-NIA--------RSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~-~~~--------~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      +++..+          .+..+.++|+| |.+++.- +-.        ..+.+.|.  .....-.+.+...+.+.||.+..
T Consensus       148 fiS~~~----------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~--~~~~~~~~~~~~~~~~~~~~~~~  214 (228)
T TIGR00478       148 FISLIS----------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDK--EAIALALHKVIDKGESPDFQEKK  214 (228)
T ss_pred             EeehHh----------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCH--HHHHHHHHHHHHHHHcCCCeEee
Confidence            775553          46778888999 7666532 111        11111111  11112344566777788999877


Q ss_pred             Eee
Q 018970          306 SKD  308 (348)
Q Consensus       306 ~~~  308 (348)
                      ...
T Consensus       215 ~~~  217 (228)
T TIGR00478       215 IIF  217 (228)
T ss_pred             EEE
Confidence            554

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.72  E-value=1.1e-07  Score=87.32  Aligned_cols=77  Identities=13%  Similarity=0.092  Sum_probs=64.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++.... .|+++|+++.|++.+++++..        ..++++.++|+.+++.+  .||.|
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~~~~--~~d~V   95 (258)
T PRK14896         27 DTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKVDLP--EFNKV   95 (258)
T ss_pred             CCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccCCch--hceEE
Confidence            45678999999999999999998754 699999999999999988754        24689999999887754  48999


Q ss_pred             eechhhhc
Q 018970          235 WVQWCIGH  242 (348)
Q Consensus       235 i~~~~l~~  242 (348)
                      +++..++.
T Consensus        96 v~NlPy~i  103 (258)
T PRK14896         96 VSNLPYQI  103 (258)
T ss_pred             EEcCCccc
Confidence            99877653

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.72  E-value=5.5e-08  Score=85.11  Aligned_cols=105  Identities=16%  Similarity=0.046  Sum_probs=76.7

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-C-C-CCC-cee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P-ETG-RYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~-~~~-~fD  232 (348)
                      .+.+|||++||+|.++..++.++...|+++|.++.+++.+++++...++     ..++++.+.|+.++ . . ... .||
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----~~~~~~~~~D~~~~l~~~~~~~~~~d  123 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----GEQAEVVRNSALRALKFLAKKPTFDN  123 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----cccEEEEehhHHHHHHHhhccCCCce
Confidence            4578999999999999999999887899999999999999998876433     23578888888553 1 1 112 478


Q ss_pred             EEeechhhhcCChhhHHHHHHHHH--HcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~--~~LkpgG~lii~~  269 (348)
                      +|+.-..+.. .  .....+..+.  .+|+++|.+++..
T Consensus       124 vv~~DPPy~~-~--~~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095       124 VIYLDPPFFN-G--ALQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             EEEECcCCCC-C--cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            8888766653 1  2344455443  4688888777653

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.72  E-value=5e-07  Score=85.02  Aligned_cols=110  Identities=18%  Similarity=0.123  Sum_probs=80.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-----CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC----C
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----T  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-----~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~  225 (348)
                      +.++..++|+|||+|.=+..|++..     ...++.+|+|..+|+.+.+.+....+.    ...+.-+++|..+.    +
T Consensus        74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p----~l~v~~l~gdy~~~l~~l~  149 (319)
T TIGR03439        74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS----HVRCAGLLGTYDDGLAWLK  149 (319)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC----CeEEEEEEecHHHHHhhcc
Confidence            4566789999999999887776543     226999999999999999988722110    12334467777552    2


Q ss_pred             C--CCCceeEEee-chhhhcCChhhHHHHHHHHHH-cCCCCcEEEEE
Q 018970          226 P--ETGRYDVIWV-QWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLK  268 (348)
Q Consensus       226 ~--~~~~fD~Ii~-~~~l~~~~~~d~~~~l~~~~~-~LkpgG~lii~  268 (348)
                      .  ......+|+. ..+|.++++++...+|+++.+ .|+|||.|++.
T Consensus       150 ~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       150 RPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             cccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence            1  1123456655 569999999889999999999 99999999984

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.71  E-value=1e-07  Score=85.62  Aligned_cols=109  Identities=22%  Similarity=0.254  Sum_probs=78.9

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-----CCCCCCc
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-----FTPETGR  230 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~~  230 (348)
                      .+..|||+|||+|.++..++...++ .|+++|.|+.++..|.+++...++     ...+.++..+++.     .+...++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-----~g~i~v~~~~me~d~~~~~~l~~~~  222 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-----SGRIEVIHNIMESDASDEHPLLEGK  222 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-----cCceEEEecccccccccccccccCc
Confidence            4458999999999999999877655 899999999999999999877655     3445555444332     2233489


Q ss_pred             eeEEeechhhhcCCh------------------------hhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          231 YDVIWVQWCIGHLTD------------------------DDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~------------------------~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +|+++++...-.-.|                        +.+..++.-+.|+|+|||.+.+.-.
T Consensus       223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            999999854221110                        1234567778899999999988654

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.70  E-value=4.9e-08  Score=87.46  Aligned_cols=105  Identities=17%  Similarity=0.203  Sum_probs=84.6

Q ss_pred             CcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCCceeEE
Q 018970          159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVI  234 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~I  234 (348)
                      ..+||||||.|.+...+|.+.++ .+.|+|+....+..|-+++.+.++      .|+.+.+.|+..+-   +++++.|-|
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~~sl~~I  123 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPDGSLDKI  123 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence            47999999999999999999887 899999999999999988877643      28999999887643   445699999


Q ss_pred             eechhhhcCChhh------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          235 WVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       235 i~~~~l~~~~~~d------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +.++.=-+.....      ...+++.+.+.|+|||.|.+.+
T Consensus       124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT  164 (227)
T COG0220         124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT  164 (227)
T ss_pred             EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence            9865533222111      3579999999999999999975

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.70  E-value=2.2e-07  Score=86.08  Aligned_cols=131  Identities=18%  Similarity=0.234  Sum_probs=88.4

Q ss_pred             CCCcEEEEeccccHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~--~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      .+.+|||+|||+|..+-.+.+..  ..+++++|.|+.|++.++..+.....     .....+......+.. +-...|+|
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~-~~~~~DLv  106 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-----NRNAEWRRVLYRDFL-PFPPDDLV  106 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-----cccchhhhhhhcccc-cCCCCcEE
Confidence            45689999999998766554432  33899999999999999987764211     011111111111111 11234999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      +++++|..++++....+++.+.+.+.+  .|++.|+....+|          ......++.|.+.|+.++.
T Consensus       107 i~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf----------~~i~~aR~~l~~~~~~v~A  165 (274)
T PF09243_consen  107 IASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF----------RRIAEARDQLLEKGAHVVA  165 (274)
T ss_pred             EEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH----------HHHHHHHHHHhhCCCceEC
Confidence            999999999987788889999888766  8888887655554          2334566777777777666

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.68  E-value=1.7e-07  Score=85.89  Aligned_cols=76  Identities=17%  Similarity=0.144  Sum_probs=62.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee--
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD--  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD--  232 (348)
                      ..++.+|||||||+|.++..++..+. .|+++|+++.+++.+++++..        ..++++..+|+.+++..  .||  
T Consensus        27 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--------~~~v~v~~~D~~~~~~~--~~d~~   95 (253)
T TIGR00755        27 VLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--------YERLEVIEGDALKVDLP--DFPKQ   95 (253)
T ss_pred             CCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--------CCcEEEEECchhcCChh--HcCCc
Confidence            45678999999999999999998776 499999999999999988753        35688999999887754  466  


Q ss_pred             -EEeechhhh
Q 018970          233 -VIWVQWCIG  241 (348)
Q Consensus       233 -~Ii~~~~l~  241 (348)
                       +|+++..++
T Consensus        96 ~~vvsNlPy~  105 (253)
T TIGR00755        96 LKVVSNLPYN  105 (253)
T ss_pred             ceEEEcCChh
Confidence             777766644

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.68  E-value=4.6e-08  Score=96.25  Aligned_cols=103  Identities=16%  Similarity=0.147  Sum_probs=73.7

Q ss_pred             CCcEEEEeccccHHHHHHHHhC-----CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          158 HLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~-----~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +..|||||||+|.++...++.+     ..+|+++|-|+.++...++.+...++     ..+++++.+|++++..+ .++|
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----~~~V~vi~~d~r~v~lp-ekvD  260 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----GDKVTVIHGDMREVELP-EKVD  260 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----TTTEEEEES-TTTSCHS-S-EE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----CCeEEEEeCcccCCCCC-Ccee
Confidence            5689999999999987766544     33899999999988887766444333     56799999999999876 5899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV  266 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li  266 (348)
                      +||+-+.=.....+-....|....+.|||||.++
T Consensus       261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  261 IIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            9998443222222345567888999999998876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.68  E-value=7.2e-08  Score=89.26  Aligned_cols=77  Identities=16%  Similarity=0.075  Sum_probs=62.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++.++. +|+++|+++.|++.+++++..         .++++..+|+.+++.++-.+|.|
T Consensus        40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---------~~v~~i~~D~~~~~~~~~~~~~v  109 (272)
T PRK00274         40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---------DNLTIIEGDALKVDLSELQPLKV  109 (272)
T ss_pred             CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---------CceEEEEChhhcCCHHHcCcceE
Confidence            45678999999999999999998876 699999999999999987642         46899999999887542225888


Q ss_pred             eechhhh
Q 018970          235 WVQWCIG  241 (348)
Q Consensus       235 i~~~~l~  241 (348)
                      +++...+
T Consensus       110 v~NlPY~  116 (272)
T PRK00274        110 VANLPYN  116 (272)
T ss_pred             EEeCCcc
Confidence            8876644

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.65  E-value=1.2e-07  Score=87.38  Aligned_cols=104  Identities=21%  Similarity=0.202  Sum_probs=82.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      .+..|||+|||+|.++...+..+..+|++++.| +|.+.|+..++...+     ..+|.++.+-++++..+ ++.|+||+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~-----~~rItVI~GKiEdieLP-Ek~DviIS  249 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL-----ADRITVIPGKIEDIELP-EKVDVIIS  249 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc-----cceEEEccCccccccCc-hhccEEEe
Confidence            456799999999999998888898899999975 699999998876543     57899999999998876 78999998


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      -.+=..+-.+....-.-.+.+.|||.|..+=
T Consensus       250 EPMG~mL~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  250 EPMGYMLVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             ccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence            5443333334444545566799999998764

>PLN02823 spermine synthase

Probab=98.60  E-value=4.5e-07  Score=86.06  Aligned_cols=110  Identities=19%  Similarity=0.236  Sum_probs=79.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~  233 (348)
                      ..+.+||.||+|.|..+..+++.. ..+|+.+|+++.+++.|++.+....-.  -...+++++..|...+- ...++||+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--~~dprv~v~~~Da~~~L~~~~~~yDv  179 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--FCDKRLELIINDARAELEKRDEKFDV  179 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--ccCCceEEEEChhHHHHhhCCCCccE
Confidence            345789999999999999988653 448999999999999999987632100  01357889998887753 23468999


Q ss_pred             EeechhhhcC---Chh--hHHHHHH-HHHHcCCCCcEEEEE
Q 018970          234 IWVQWCIGHL---TDD--DFVSFFK-RAKVGLKPGGFFVLK  268 (348)
Q Consensus       234 Ii~~~~l~~~---~~~--d~~~~l~-~~~~~LkpgG~lii~  268 (348)
                      |++-.. ...   +..  --..+++ .+.+.|+|||++++.
T Consensus       180 Ii~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        180 IIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             EEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            997521 110   000  1246888 899999999998764

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.57  E-value=2.2e-07  Score=81.76  Aligned_cols=144  Identities=15%  Similarity=0.067  Sum_probs=101.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD  232 (348)
                      +..+.+|||...|-|+.++..++++..+|.-++.++..++.|.-+-=..    .-....+.++.+|..++.  +++.+||
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr----~l~~~~i~iilGD~~e~V~~~~D~sfD  207 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSR----ELFEIAIKIILGDAYEVVKDFDDESFD  207 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCc----cccccccEEecccHHHHHhcCCccccc
Confidence            5678899999999999999999999978999999999998876442111    111345788888876643  5678999


Q ss_pred             EEeec-hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          233 VIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       233 ~Ii~~-~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      +|+-- .=|.+...-.-..|.++++|+|||||.++-........+ ..      .--...+.+.|.++||.++.....
T Consensus       208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry-rG------~d~~~gVa~RLr~vGF~~v~~~~~  278 (287)
T COG2521         208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY-RG------LDLPKGVAERLRRVGFEVVKKVRE  278 (287)
T ss_pred             eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc-cc------CChhHHHHHHHHhcCceeeeeehh
Confidence            99842 122222222346899999999999999987653322111 00      012346888999999998876544

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.56  E-value=1.7e-07  Score=87.49  Aligned_cols=82  Identities=13%  Similarity=0.048  Sum_probs=65.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++.... .|+++|+++.|++.+++++...+.     ..++++...|+.+...  ..||+|
T Consensus        34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~-----~~~v~ii~~Dal~~~~--~~~d~V  105 (294)
T PTZ00338         34 IKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPL-----ASKLEVIEGDALKTEF--PYFDVC  105 (294)
T ss_pred             CCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECCHhhhcc--cccCEE
Confidence            56778999999999999999987755 599999999999999998865322     2568999999987664  368999


Q ss_pred             eechhhhcCC
Q 018970          235 WVQWCIGHLT  244 (348)
Q Consensus       235 i~~~~l~~~~  244 (348)
                      +++...+-.+
T Consensus       106 vaNlPY~Ist  115 (294)
T PTZ00338        106 VANVPYQISS  115 (294)
T ss_pred             EecCCcccCc
Confidence            9876655433

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.55  E-value=7.1e-08  Score=92.08  Aligned_cols=148  Identities=19%  Similarity=0.185  Sum_probs=111.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++..++|+|||.|....++..-....++++|.++..+..+.......++     .....+...|+...+++++.||.+
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l-----~~k~~~~~~~~~~~~fedn~fd~v  182 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYL-----DNKCNFVVADFGKMPFEDNTFDGV  182 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHh-----hhhcceehhhhhcCCCCccccCcE
Confidence            456668999999999999998876666899999999999988876655433     345666778999999999999999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce------ecCCCCc-------eecCHHHHHHHHHhcCC
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV------LDKEDRS-------ITRSDFYFKELFSRCGL  301 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~------~d~~~~~-------~~~s~~~l~~l~~~aGf  301 (348)
                      .+..+..|.+  +...++++++++++|||++++.+.+....+.      .+.....       .......+-++++..||
T Consensus       183 ~~ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~  260 (364)
T KOG1269|consen  183 RFLEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGF  260 (364)
T ss_pred             EEEeecccCC--cHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccc
Confidence            9999999999  8889999999999999999997654332221      1111000       11233346677788888


Q ss_pred             eEEEEeec
Q 018970          302 HIYKSKDQ  309 (348)
Q Consensus       302 ~~v~~~~~  309 (348)
                      ..+..+..
T Consensus       261 ~~~~~~~d  268 (364)
T KOG1269|consen  261 EHLKLEKD  268 (364)
T ss_pred             hhhhhccc
Confidence            87774443

>PRK04148 hypothetical protein; Provisional

Probab=98.53  E-value=1.2e-06  Score=71.66  Aligned_cols=92  Identities=16%  Similarity=0.136  Sum_probs=69.3

Q ss_pred             CCCcEEEEeccccH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEE
Q 018970          157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVI  234 (348)
Q Consensus       157 ~~~~VLDvGcG~G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~I  234 (348)
                      ++.+|||||||.|. ++..|.+.+. .|+++|+++..++.++++.             +++...|+.+-.+. -..+|+|
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~-------------~~~v~dDlf~p~~~~y~~a~li   81 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG-------------LNAFVDDLFNPNLEIYKNAKLI   81 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC-------------CeEEECcCCCCCHHHHhcCCEE
Confidence            45789999999996 8888886666 5999999999999887763             56888898875533 3578999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+...-.     ++...+.++++-+  |.-++|..
T Consensus        82 ysirpp~-----el~~~~~~la~~~--~~~~~i~~  109 (134)
T PRK04148         82 YSIRPPR-----DLQPFILELAKKI--NVPLIIKP  109 (134)
T ss_pred             EEeCCCH-----HHHHHHHHHHHHc--CCCEEEEc
Confidence            9866533     6777777777744  45566654

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.52  E-value=6.6e-07  Score=86.10  Aligned_cols=110  Identities=17%  Similarity=0.139  Sum_probs=87.3

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCceeE
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDV  233 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~  233 (348)
                      +.+|||+=|=||.++.+.+..+..+|+.||.|...++.|++++.-+|+.    ...+.|++.|+.++-    ....+||+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~g~~fDl  293 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERRGEKFDL  293 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhcCCcccE
Confidence            7899999999999999998888878999999999999999998765542    345789999987753    22348999


Q ss_pred             Eeech-hhhcCC------hhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          234 IWVQW-CIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       234 Ii~~~-~l~~~~------~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      |++-. +|.--+      ..+...++..+.++|+|||.+++..+.
T Consensus       294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            99632 222111      136788999999999999999998754

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=9.4e-08  Score=77.98  Aligned_cols=79  Identities=13%  Similarity=0.107  Sum_probs=67.5

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      .+..++|+|||.|-++....-.....|.|+|+++..++.+++++.+.       ..++++.++|+.++.+..+.||.++.
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf-------EvqidlLqcdildle~~~g~fDtavi  120 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF-------EVQIDLLQCDILDLELKGGIFDTAVI  120 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh-------hhhhheeeeeccchhccCCeEeeEEe
Confidence            46789999999999997665455568999999999999999988764       45789999999998877789999999


Q ss_pred             chhhhc
Q 018970          237 QWCIGH  242 (348)
Q Consensus       237 ~~~l~~  242 (348)
                      +..|..
T Consensus       121 NppFGT  126 (185)
T KOG3420|consen  121 NPPFGT  126 (185)
T ss_pred             cCCCCc
Confidence            988774

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=98.49  E-value=7.8e-07  Score=76.20  Aligned_cols=158  Identities=15%  Similarity=0.128  Sum_probs=103.6

Q ss_pred             cCCCCCcEEEEeccccHHHHHHHHh-CCC-cEEEEcCCHH----------HHHHHHHHhCCCCCCCcCCCcceeEEEcCC
Q 018970          154 RNNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSH----------FLDAARESLAPENHMAPDMHKATNFFCVPL  221 (348)
Q Consensus       154 ~~~~~~~VLDvGcG~G~~~~~la~~-~~~-~v~~vD~S~~----------~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~  221 (348)
                      +++++.+|+|+--|.|++++.+... ++. .|+++-+.+.          +-..+++..          ..|.+.+-.++
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~----------~aN~e~~~~~~  114 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV----------YANVEVIGKPL  114 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh----------hhhhhhhCCcc
Confidence            4788999999999999999977643 222 4555433322          111121111          12344444454


Q ss_pred             CCCCCCCCceeEEeechhhhcC-----ChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHH
Q 018970          222 QDFTPETGRYDVIWVQWCIGHL-----TDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELF  296 (348)
Q Consensus       222 ~~~~~~~~~fD~Ii~~~~l~~~-----~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~  296 (348)
                      ..+. .....|+++.....|.+     ......++...+++.|||||.+.+.++....+............+...+....
T Consensus       115 ~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~v  193 (238)
T COG4798         115 VALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEV  193 (238)
T ss_pred             cccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHH
Confidence            4444 23567777764444432     23456789999999999999999999876554432222222235778899999


Q ss_pred             HhcCCeEEEEeecCCCCccceEEEEE
Q 018970          297 SRCGLHIYKSKDQKGLPEELFAVKMY  322 (348)
Q Consensus       297 ~~aGf~~v~~~~~~~~~~~l~~v~~~  322 (348)
                      +.+||++.-......+|.+.+.+++|
T Consensus       194 eaaGFkl~aeS~ilaNp~D~~~i~v~  219 (238)
T COG4798         194 EAAGFKLEAESEILANPDDPRGIWVF  219 (238)
T ss_pred             HhhcceeeeeehhhcCCCCCCceeec
Confidence            99999999988888888887777776

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.47  E-value=6.5e-07  Score=82.77  Aligned_cols=108  Identities=19%  Similarity=0.227  Sum_probs=81.2

Q ss_pred             CcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEee
Q 018970          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV  236 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii~  236 (348)
                      .+||-||.|.|..++.+++.. ..+++.+|+++..++.+++.+........  .+++++...|..++-.. ..+||+|++
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i~Dg~~~v~~~~~~fDvIi~  155 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIIIDDGVEFLRDCEEKFDVIIV  155 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEeccHHHHHHhCCCcCCEEEE
Confidence            599999999999999999665 34899999999999999999876421111  46788888888775432 247999997


Q ss_pred             chhhh--cCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          237 QWCIG--HLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       237 ~~~l~--~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      -..=.  ..+.-.-..|++.|.++|+++|+++..
T Consensus       156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            43322  101001268999999999999999887

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.46  E-value=5.1e-06  Score=78.02  Aligned_cols=142  Identities=16%  Similarity=0.082  Sum_probs=102.8

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV  219 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~  219 (348)
                      ..+.+.+.+.-.   ..++..|||==||||.++....-.|. .++|+|++..|++-|+.|+...++      ....+...
T Consensus       183 P~lAR~mVNLa~---v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i------~~~~~~~~  252 (347)
T COG1041         183 PRLARAMVNLAR---VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI------EDYPVLKV  252 (347)
T ss_pred             HHHHHHHHHHhc---cccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc------CceeEEEe
Confidence            344455444333   67888999999999999998765566 499999999999999999887543      22333444


Q ss_pred             -CCCCCCCCCCceeEEeechhhhcCC-------hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970          220 -PLQDFTPETGRYDVIWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY  291 (348)
Q Consensus       220 -d~~~~~~~~~~fD~Ii~~~~l~~~~-------~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~  291 (348)
                       |+.+++++..++|.|++-....--+       ++=+..+|+.+.++||+||++++..+.                   .
T Consensus       253 ~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~-------------------~  313 (347)
T COG1041         253 LDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR-------------------D  313 (347)
T ss_pred             cccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC-------------------c
Confidence             9999998877899999754333221       122678999999999999999998641                   1


Q ss_pred             HHHHHHhcCCeEEEEeecC
Q 018970          292 FKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       292 l~~l~~~aGf~~v~~~~~~  310 (348)
                      ....+++.||+++..-.+.
T Consensus       314 ~~~~~~~~~f~v~~~~~~~  332 (347)
T COG1041         314 PRHELEELGFKVLGRFTMR  332 (347)
T ss_pred             chhhHhhcCceEEEEEEEe
Confidence            2345677899988755443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.45  E-value=3.1e-06  Score=81.59  Aligned_cols=127  Identities=16%  Similarity=0.089  Sum_probs=87.7

Q ss_pred             CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--C---------
Q 018970          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--E---------  227 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~---------  227 (348)
                      .+|||++||+|.++..++.. ...|+++|.|+.+++.|++++...++      .++.|...|+.++..  .         
T Consensus       208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~~~~~  280 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMSAEEFTQAMNGVREFNRLK  280 (362)
T ss_pred             CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHhhcccccccc
Confidence            47999999999999987754 55799999999999999999865433      368899998866320  0         


Q ss_pred             -----CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCe
Q 018970          228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLH  302 (348)
Q Consensus       228 -----~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~  302 (348)
                           ...||+|++-..-.-+    ...+++.+.+   |+++++++.+..           .+   ...+..+. + ||+
T Consensus       281 ~~~~~~~~~D~v~lDPPR~G~----~~~~l~~l~~---~~~ivyvSC~p~-----------tl---arDl~~L~-~-gY~  337 (362)
T PRK05031        281 GIDLKSYNFSTIFVDPPRAGL----DDETLKLVQA---YERILYISCNPE-----------TL---CENLETLS-Q-THK  337 (362)
T ss_pred             cccccCCCCCEEEECCCCCCC----cHHHHHHHHc---cCCEEEEEeCHH-----------HH---HHHHHHHc-C-CcE
Confidence                 1258999986663221    2345555544   788888886421           11   11233333 3 999


Q ss_pred             EEEEeecCCCCcc
Q 018970          303 IYKSKDQKGLPEE  315 (348)
Q Consensus       303 ~v~~~~~~~~~~~  315 (348)
                      +......--||..
T Consensus       338 l~~v~~~DmFPqT  350 (362)
T PRK05031        338 VERFALFDQFPYT  350 (362)
T ss_pred             EEEEEEcccCCCC
Confidence            9888777777754

>PRK00536 speE spermidine synthase; Provisional

Probab=98.45  E-value=6.5e-07  Score=81.86  Aligned_cols=101  Identities=17%  Similarity=0.090  Sum_probs=73.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      +.+.+||-||.|.|..++.+++. ..+|+.+|+++.+++.+++.++...-...  .+++++... +.+  ...++||+||
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~~~~--DpRv~l~~~-~~~--~~~~~fDVII  144 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHEVKN--NKNFTHAKQ-LLD--LDIKKYDLII  144 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHHhhc--CCCEEEeeh-hhh--ccCCcCCEEE
Confidence            56789999999999999999954 45899999999999999997654211001  234555431 111  1136899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +-..       ....+++.+++.|+|||.++...
T Consensus       145 vDs~-------~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        145 CLQE-------PDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             EcCC-------CChHHHHHHHHhcCCCcEEEECC
Confidence            7543       12578899999999999998863

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.44  E-value=1.1e-06  Score=79.91  Aligned_cols=158  Identities=22%  Similarity=0.267  Sum_probs=97.3

Q ss_pred             hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccc--cHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCC
Q 018970          135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGI--GRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDM  210 (348)
Q Consensus       135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~--G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~  210 (348)
                      ....+.||.+.......+.   .-...||||||-  -.....++++. +. .|..+|++|-.+..++..+..        
T Consensus        49 ar~nR~Fl~RaVr~la~~~---GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~--------  117 (267)
T PF04672_consen   49 ARANRAFLRRAVRYLAEEA---GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD--------  117 (267)
T ss_dssp             HHHHHHHHHHHHHHHHCTT------EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--------
T ss_pred             HHHHHHHHHHHHHHHHHhc---CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC--------
Confidence            3455677777776554421   223699999994  33455566553 33 899999999999999998876        


Q ss_pred             Ccc--eeEEEcCCCCCC--CC----CCcee-----EEeechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCCc
Q 018970          211 HKA--TNFFCVPLQDFT--PE----TGRYD-----VIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGF  276 (348)
Q Consensus       211 ~~~--i~~~~~d~~~~~--~~----~~~fD-----~Ii~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~  276 (348)
                      ..+  ..+..+|+.+-.  ..    .+-+|     .|++..++||++| +++..+++.+.+.|.||.+|+++........
T Consensus       118 ~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p  197 (267)
T PF04672_consen  118 NPRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP  197 (267)
T ss_dssp             -TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH
T ss_pred             CCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH
Confidence            234  789999987732  00    12344     6778899999998 8899999999999999999999865432110


Q ss_pred             --------ee-cCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          277 --------VL-DKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       277 --------~~-d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                              .+ ........+|.+++..+|.  ||++++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~--g~elve  233 (267)
T PF04672_consen  198 ERAEALEAVYAQAGSPGRPRSREEIAAFFD--GLELVE  233 (267)
T ss_dssp             HHHHHHHHHHHHCCS----B-HHHHHHCCT--TSEE-T
T ss_pred             HHHHHHHHHHHcCCCCceecCHHHHHHHcC--CCccCC
Confidence                    11 1123334479999999998  899887

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.43  E-value=1.3e-06  Score=75.83  Aligned_cols=109  Identities=21%  Similarity=0.186  Sum_probs=76.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-c---------EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-E---------VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF  224 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~---------v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~  224 (348)
                      ..++..|||-=||+|.+....+..+.. .         +.|+|+++.+++.|++++...++     ...+.+...|+.++
T Consensus        26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----~~~i~~~~~D~~~l  100 (179)
T PF01170_consen   26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----EDYIDFIQWDAREL  100 (179)
T ss_dssp             --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGGG
T ss_pred             CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----CCceEEEecchhhc
Confidence            567789999999999998776654333 2         78999999999999999876554     45689999999999


Q ss_pred             CCCCCceeEEeechhhhcC-Ch-hh----HHHHHHHHHHcCCCCcEEEEE
Q 018970          225 TPETGRYDVIWVQWCIGHL-TD-DD----FVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       225 ~~~~~~fD~Ii~~~~l~~~-~~-~d----~~~~l~~~~~~LkpgG~lii~  268 (348)
                      +..++++|+|+++..+..- .. .+    ...+++.+.++|++...+++.
T Consensus       101 ~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen  101 PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred             ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence            8656899999998776632 21 12    356788999999994444444

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.43  E-value=9e-07  Score=81.94  Aligned_cols=136  Identities=19%  Similarity=0.203  Sum_probs=91.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCCceeE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV  233 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~  233 (348)
                      .+.+|||+=|=||.++.+.+..+..+|+.||.|..+++.+++++.-.++.    ...++|.+.|+.++-   ...++||+
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----~~~~~~~~~Dvf~~l~~~~~~~~fD~  198 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----LDRHRFIQGDVFKFLKRLKKGGRFDL  198 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----CTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHHHhcCCCCCE
Confidence            35799999999999999888777778999999999999999998755431    246889998887632   12368999


Q ss_pred             Eeechh-hhc--CC-hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcC--CeEEEEe
Q 018970          234 IWVQWC-IGH--LT-DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCG--LHIYKSK  307 (348)
Q Consensus       234 Ii~~~~-l~~--~~-~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aG--f~~v~~~  307 (348)
                      ||+-.. |..  .. ..++..+++.+.++|+|||.|++..+...             .+.+.+.+++.+++  +++++..
T Consensus       199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~-------------i~~~~l~~~~~~~a~~~~~~~~~  265 (286)
T PF10672_consen  199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH-------------ISPDFLLEAVAEAAREVEFIERL  265 (286)
T ss_dssp             EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT-------------S-HHHHHHHHHHHHHHCEEEEEE
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc-------------cCHHHHHHHHHHhCccceEeeee
Confidence            997321 111  00 13677899999999999999887654321             34556667666654  5555544


Q ss_pred             ec
Q 018970          308 DQ  309 (348)
Q Consensus       308 ~~  309 (348)
                      .+
T Consensus       266 ~~  267 (286)
T PF10672_consen  266 GQ  267 (286)
T ss_dssp             E-
T ss_pred             cc
Confidence            33

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.39  E-value=2.5e-07  Score=80.48  Aligned_cols=106  Identities=13%  Similarity=0.146  Sum_probs=77.0

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD  232 (348)
                      ++.+|||+=||+|.++...+.++...|+.||.++..+...++++...+.     ...+.+.+.|...+-    .....||
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~~d~~~~l~~~~~~~~~fD  116 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIKGDAFKFLLKLAKKGEKFD  116 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----CcceeeeccCHHHHHHhhcccCCCce
Confidence            5689999999999999999999999999999999999999999876443     335778888754321    1347899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHH--HcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~--~~LkpgG~lii~~  269 (348)
                      +|++-.....-.  ....++..+.  .+|+++|++++-.
T Consensus       117 iIflDPPY~~~~--~~~~~l~~l~~~~~l~~~~~ii~E~  153 (183)
T PF03602_consen  117 IIFLDPPYAKGL--YYEELLELLAENNLLNEDGLIIIEH  153 (183)
T ss_dssp             EEEE--STTSCH--HHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             EEEECCCcccch--HHHHHHHHHHHCCCCCCCEEEEEEe
Confidence            999987766422  1367777776  7999999888865

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.39  E-value=1e-06  Score=76.53  Aligned_cols=123  Identities=20%  Similarity=0.199  Sum_probs=88.5

Q ss_pred             cEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeech
Q 018970          160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW  238 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~  238 (348)
                      +++|||+|.|.-+..++-..++ +++.+|.+.+-+...+......++      .|+++.+..+++ .....+||+|++..
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~-~~~~~~fd~v~aRA  123 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVINGRAEE-PEYRESFDVVTARA  123 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEeeecc-cccCCCccEEEeeh
Confidence            7999999999999988877776 799999999988888777665544      478999998888 33347899999977


Q ss_pred             hhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       239 ~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      +-      .+..++.-+...|++||.+++.-....            .-..+.....++..|.+.....
T Consensus       124 v~------~l~~l~~~~~~~l~~~G~~l~~KG~~~------------~~El~~~~~~~~~~~~~~~~v~  174 (184)
T PF02527_consen  124 VA------PLDKLLELARPLLKPGGRLLAYKGPDA------------EEELEEAKKAWKKLGLKVLSVP  174 (184)
T ss_dssp             SS------SHHHHHHHHGGGEEEEEEEEEEESS--------------HHHHHTHHHHHHCCCEEEEEEE
T ss_pred             hc------CHHHHHHHHHHhcCCCCEEEEEcCCCh------------HHHHHHHHhHHHHhCCEEeeec
Confidence            63      356888999999999999988752110            0112234555666666665543

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.37  E-value=1.1e-05  Score=77.58  Aligned_cols=128  Identities=15%  Similarity=0.069  Sum_probs=86.8

Q ss_pred             CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-----------
Q 018970          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-----------  227 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-----------  227 (348)
                      .+|||++||+|.++..++.. ...|+++|+|+.+++.|++++...++      .++.|.+.|+.++...           
T Consensus       199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~~~  271 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRRLK  271 (353)
T ss_pred             CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccccc
Confidence            47999999999999987755 45799999999999999999866433      3688999988763211           


Q ss_pred             -----CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCe
Q 018970          228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLH  302 (348)
Q Consensus       228 -----~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~  302 (348)
                           ...||+|++-..=.-    -...+++.+.+   |+++++++.+..           .+.+   ++..+.  .||+
T Consensus       272 ~~~~~~~~~d~v~lDPPR~G----~~~~~l~~l~~---~~~ivYvsC~p~-----------tlaR---Dl~~L~--~~Y~  328 (353)
T TIGR02143       272 GIDLKSYNCSTIFVDPPRAG----LDPDTCKLVQA---YERILYISCNPE-----------TLKA---NLEQLS--ETHR  328 (353)
T ss_pred             ccccccCCCCEEEECCCCCC----CcHHHHHHHHc---CCcEEEEEcCHH-----------HHHH---HHHHHh--cCcE
Confidence                 013799998665211    12345555544   788998886421           1112   233333  3599


Q ss_pred             EEEEeecCCCCccc
Q 018970          303 IYKSKDQKGLPEEL  316 (348)
Q Consensus       303 ~v~~~~~~~~~~~l  316 (348)
                      +......--||...
T Consensus       329 l~~v~~~DmFP~T~  342 (353)
T TIGR02143       329 VERFALFDQFPYTH  342 (353)
T ss_pred             EEEEEEcccCCCCC
Confidence            88888777777643

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.37  E-value=1.1e-06  Score=88.32  Aligned_cols=107  Identities=16%  Similarity=0.054  Sum_probs=81.7

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV  233 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~  233 (348)
                      ....+||||||.|.++..++...++ .+.|+|++...+..+.++....++      .|+.+.+.|+..+.  ++++++|.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~~~~~~~~~sv~~  420 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDLILNDLPNNSLDG  420 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHHHHHhcCcccccE
Confidence            4567999999999999999998887 899999999999888777655443      46667777664322  45678999


Q ss_pred             EeechhhhcCChhh------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          234 IWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~~d------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |++++.=-+.....      -..+++.+.++|||||.|.+..
T Consensus       421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T  462 (506)
T PRK01544        421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS  462 (506)
T ss_pred             EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence            99866533322111      2579999999999999999876

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.36  E-value=1.1e-06  Score=85.07  Aligned_cols=99  Identities=16%  Similarity=0.186  Sum_probs=76.8

Q ss_pred             CCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      +.+|||++||+|.++..++.... ..|+++|+++.+++.+++++...++      .++.+...|+..+....+.||+|++
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da~~~l~~~~~fD~V~l  131 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDANALLHEERKFDVVDI  131 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhHHHHHhhcCCCCEEEE
Confidence            35899999999999999876543 4799999999999999998865433      2456888888664321357999998


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      .. +   .  ....++..+.+.+++||+++++
T Consensus       132 DP-~---G--s~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        132 DP-F---G--SPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             CC-C---C--CcHHHHHHHHHHhcCCCEEEEE
Confidence            64 2   1  3457888877889999999997

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=3.9e-06  Score=72.92  Aligned_cols=107  Identities=19%  Similarity=0.192  Sum_probs=77.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CCC--cEEEEcCCHHHHHHHHHHhCCCCCCCc--C--CCcceeEEEcCCCCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YFN--EVDLLEPVSHFLDAARESLAPENHMAP--D--MHKATNFFCVPLQDFTPE  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~--~--~~~~i~~~~~d~~~~~~~  227 (348)
                      +.++.+.||+|+|+|+++..++.. +..  .+.|+|.-++.++.+++++....-.+.  .  -..+..+..+|-...-.+
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e  159 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE  159 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence            457899999999999999877633 222  349999999999999998765321000  0  024567778887776666


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ..+||.|++...-.        ...+++...|+|||.++|--
T Consensus       160 ~a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  160 QAPYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             cCCcceEEEccCcc--------ccHHHHHHhhccCCeEEEee
Confidence            68999999874432        45567788899999998853

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.28  E-value=1.3e-06  Score=76.83  Aligned_cols=100  Identities=18%  Similarity=0.234  Sum_probs=71.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++..|||+-||.|.++..++.. ....|+++|++|..++.+++++...++     ...+.....|..++.. .+.||-
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----~~~i~~~~~D~~~~~~-~~~~dr  172 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----ENRIEVINGDAREFLP-EGKFDR  172 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------TTTEEEEES-GGG----TT-EEE
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----CCeEEEEcCCHHHhcC-ccccCE
Confidence            456789999999999999999873 334799999999999999998876544     4568889999988876 589999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV  266 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li  266 (348)
                      |+++..-.      ...++..+.+++++||++.
T Consensus       173 vim~lp~~------~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  173 VIMNLPES------SLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEE--TSS------GGGGHHHHHHHEEEEEEEE
T ss_pred             EEECChHH------HHHHHHHHHHHhcCCcEEE
Confidence            99876522      2258888999999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.28  E-value=1.3e-06  Score=79.61  Aligned_cols=112  Identities=21%  Similarity=0.209  Sum_probs=77.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCC-cee
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETG-RYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~-~fD  232 (348)
                      +++.+||-||.|.|..+..+++.. ..+|+++|+++.+++.|++.+......  --..+++++..|...+- ...+ +||
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~yD  152 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKYD  152 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCccc
Confidence            467899999999999999988544 348999999999999999976531100  01357888888886643 2224 899


Q ss_pred             EEeechhhhcCChh--hHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~--d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++-..-...+..  --..+++.+.+.|+|||++++..
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            99973221111111  13589999999999999998865

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.28  E-value=8.7e-07  Score=80.45  Aligned_cols=97  Identities=19%  Similarity=0.173  Sum_probs=77.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce-eEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT-NFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..+..++|+|||.|..+..   .-...+.+.|.+...+..+++.             +. ....+|+..+++.+.+||.+
T Consensus        44 ~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~-------------~~~~~~~ad~l~~p~~~~s~d~~  107 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS-------------GGDNVCRADALKLPFREESFDAA  107 (293)
T ss_pred             CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC-------------CCceeehhhhhcCCCCCCccccc
Confidence            4467899999999966441   1112589999998888877643             22 46778999999888999999


Q ss_pred             eechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEE
Q 018970          235 WVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       235 i~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      ++..++||+.. .....+++++.++|+|||...+.
T Consensus       108 lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen  108 LSIAVIHHLSTRERRERALEELLRVLRPGGNALVY  142 (293)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence            99999999976 45678999999999999987774

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.28  E-value=5.3e-06  Score=82.17  Aligned_cols=109  Identities=16%  Similarity=0.137  Sum_probs=81.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f  231 (348)
                      +.++.+|||++||+|.-+.++++....  .|+++|+++..++.+++++.+.|+      .++.+...|...+. ...+.|
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~~~~~~~~~f  184 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRVFGAALPETF  184 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhhhhhhchhhc
Confidence            568889999999999999999876532  799999999999999999987654      45677777876653 223679


Q ss_pred             eEEee----c--hhhhcCC-------hhh-------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          232 DVIWV----Q--WCIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       232 D~Ii~----~--~~l~~~~-------~~d-------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |.|++    +  .++..-+       .++       ...+|..+.++|||||.|+.++
T Consensus       185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence            99993    2  2222211       111       2578999999999999997764

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.27  E-value=1.2e-05  Score=71.14  Aligned_cols=143  Identities=20%  Similarity=0.163  Sum_probs=98.4

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      +.+++|||+|.|.-+..++-..++ +|+.+|...+-+...++...+.++      .|+++++.-++++......||+|++
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L------~nv~i~~~RaE~~~~~~~~~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL------ENVEIVHGRAEEFGQEKKQYDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC------CCeEEehhhHhhcccccccCcEEEe
Confidence            589999999999999988755554 799999999888888777666544      5789999999988743222999998


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCccc
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEEL  316 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~~l  316 (348)
                      ..+-      ++..++.-+..++|+||.+++.-.....+            -..+.++.....|+.+...... ..|...
T Consensus       142 RAva------~L~~l~e~~~pllk~~g~~~~~k~~~~~~------------e~~e~~~a~~~~~~~~~~~~~~-~~p~~~  202 (215)
T COG0357         142 RAVA------SLNVLLELCLPLLKVGGGFLAYKGLAGKD------------ELPEAEKAILPLGGQVEKVFSL-TVPELD  202 (215)
T ss_pred             ehcc------chHHHHHHHHHhcccCCcchhhhHHhhhh------------hHHHHHHHHHhhcCcEEEEEEe-ecCCCC
Confidence            7652      45577888999999999876543211101            1234666777778886665433 233333


Q ss_pred             eEEEEEEEe
Q 018970          317 FAVKMYALT  325 (348)
Q Consensus       317 ~~v~~~~l~  325 (348)
                      .+..+..++
T Consensus       203 ~~r~l~ii~  211 (215)
T COG0357         203 GERHLVIIR  211 (215)
T ss_pred             CceEEEEEe
Confidence            344444443

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.24  E-value=9.5e-06  Score=71.75  Aligned_cols=124  Identities=15%  Similarity=0.136  Sum_probs=88.6

Q ss_pred             EEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCCCCCceeEEeech
Q 018970          161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVIWVQW  238 (348)
Q Consensus       161 VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~Ii~~~  238 (348)
                      |.||||-.|++..+|++++.. .++++|+++.-++.|++++...++     ..++++..+|-.+ ++.. ...|+|++.+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----~~~i~~rlgdGL~~l~~~-e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----EDRIEVRLGDGLEVLKPG-EDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE-SGGGG--GG-G---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----cccEEEEECCcccccCCC-CCCCEEEEec
Confidence            689999999999999988765 799999999999999999987665     4679999998544 4422 2379888766


Q ss_pred             hhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       239 ~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      +=..    -+..+|.+....++....|++..+.                ....+++++.+.||.++......
T Consensus        75 MGG~----lI~~ILe~~~~~~~~~~~lILqP~~----------------~~~~LR~~L~~~gf~I~~E~lv~  126 (205)
T PF04816_consen   75 MGGE----LIIEILEAGPEKLSSAKRLILQPNT----------------HAYELRRWLYENGFEIIDEDLVE  126 (205)
T ss_dssp             E-HH----HHHHHHHHTGGGGTT--EEEEEESS-----------------HHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCHH----HHHHHHHhhHHHhccCCeEEEeCCC----------------ChHHHHHHHHHCCCEEEEeEEEe
Confidence            5332    4667888887777766677776532                34679999999999999866543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=98.24  E-value=1.4e-05  Score=73.44  Aligned_cols=149  Identities=19%  Similarity=0.189  Sum_probs=97.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHh---CCC--------------------CCCCcCC--
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL---APE--------------------NHMAPDM--  210 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~---~~~--------------------~~~~~~~--  210 (348)
                      ..+.+||-=|||.|+++..|+..++. +-|-+.|--|+-...=.+   ...                    .+-+..+  
T Consensus       149 r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD  227 (369)
T KOG2798|consen  149 RTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD  227 (369)
T ss_pred             ccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence            44668999999999999999988886 788888888875543221   000                    0000000  


Q ss_pred             ---------CcceeEEEcCCCCCCCC---CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce-
Q 018970          211 ---------HKATNFFCVPLQDFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV-  277 (348)
Q Consensus       211 ---------~~~i~~~~~d~~~~~~~---~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~-  277 (348)
                               ........+|+.+.-..   .+.||+|+.++.+....  ++..+++.+..+|||||+.+-..+..-+-.. 
T Consensus       228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~  305 (369)
T KOG2798|consen  228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPGGVWINLGPLLYHFEDT  305 (369)
T ss_pred             ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCCcEEEeccceeeeccCC
Confidence                     01112233454442211   24799999998777655  8999999999999999998876543311000 


Q ss_pred             ec-CCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          278 LD-KEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       278 ~d-~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      .+ ....++-++.+++..+.+..||+++..+
T Consensus       306 ~g~~~~~siEls~edl~~v~~~~GF~~~ke~  336 (369)
T KOG2798|consen  306 HGVENEMSIELSLEDLKRVASHRGFEVEKER  336 (369)
T ss_pred             CCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence            00 1133455799999999999999998866

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.22  E-value=2.5e-05  Score=63.50  Aligned_cols=101  Identities=22%  Similarity=0.231  Sum_probs=70.2

Q ss_pred             EEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcc-eeEEEcCCCC--CCCCC-CceeEE
Q 018970          161 ALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCVPLQD--FTPET-GRYDVI  234 (348)
Q Consensus       161 VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~-i~~~~~d~~~--~~~~~-~~fD~I  234 (348)
                      ++|+|||+|... .+.....  ..++++|+++.++..++......       ... +.+...+...  ++... ..||++
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~  123 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA-------GLGLVDFVVADALGGVLPFEDSASFDLV  123 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc-------CCCceEEEEeccccCCCCCCCCCceeEE
Confidence            999999999976 3332222  25888999999999855443211       111 5677777665  55554 489999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                      .+...+++..   ....+..+.+.|+|+|.+++.....
T Consensus       124 ~~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         124 ISLLVLHLLP---PAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             eeeeehhcCC---HHHHHHHHHHhcCCCcEEEEEeccC
Confidence            4444444433   6789999999999999999987543

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=6.4e-06  Score=74.85  Aligned_cols=79  Identities=18%  Similarity=0.140  Sum_probs=66.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCC-ceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~fD~  233 (348)
                      +.++.+|||||+|.|.+|..|+++... |+++|+++.+++..++.+..        ..+++++.+|+..++++.- .++.
T Consensus        28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~~--------~~n~~vi~~DaLk~d~~~l~~~~~   98 (259)
T COG0030          28 ISPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFAP--------YDNLTVINGDALKFDFPSLAQPYK   98 (259)
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhccc--------ccceEEEeCchhcCcchhhcCCCE
Confidence            566789999999999999999988775 99999999999999998763        4689999999998886622 5788


Q ss_pred             Eeechhhhc
Q 018970          234 IWVQWCIGH  242 (348)
Q Consensus       234 Ii~~~~l~~  242 (348)
                      |+++-..+-
T Consensus        99 vVaNlPY~I  107 (259)
T COG0030          99 VVANLPYNI  107 (259)
T ss_pred             EEEcCCCcc
Confidence            888766543

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.17  E-value=5e-05  Score=71.82  Aligned_cols=143  Identities=16%  Similarity=0.165  Sum_probs=106.9

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||.=||.|.++..++..+...|+++|++|..++.+++++.-+++     ...+..+++|..++....+.+|-|+
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----~~~v~~i~gD~rev~~~~~~aDrIi  261 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----EGRVEPILGDAREVAPELGVADRII  261 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----cceeeEEeccHHHhhhccccCCEEE
Confidence            45789999999999999999987776799999999999999999876554     3448899999998876657899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCC--eEEEEeecCCCC
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGL--HIYKSKDQKGLP  313 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf--~~v~~~~~~~~~  313 (348)
                      ++..-      +-..++..+.+.+++||.+.+.+.......        ..+....+.+.....|+  .+.....-..+.
T Consensus       262 m~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~--------~~~~~~~i~~~~~~~~~~~~v~~~r~Vksys  327 (341)
T COG2520         262 MGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDDI--------EERPEKRIKSAARKGGYKVEVLKVRRVKSYS  327 (341)
T ss_pred             eCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhhc--------ccchHHHHHHHHhhccCcceEEEEEEecccC
Confidence            87663      234688888999999999999886543211        11244557777777774  444455555554


Q ss_pred             ccce
Q 018970          314 EELF  317 (348)
Q Consensus       314 ~~l~  317 (348)
                      +..|
T Consensus       328 P~v~  331 (341)
T COG2520         328 PGVY  331 (341)
T ss_pred             CCee
Confidence            4433

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.16  E-value=9.2e-06  Score=73.26  Aligned_cols=81  Identities=16%  Similarity=0.098  Sum_probs=67.2

Q ss_pred             ccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       153 ~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      ..+.++..|||||.|||.++..|++.+.. |.++|+++.|+...++++.....     .....+..+|+...+.+  .||
T Consensus        54 a~~k~tD~VLEvGPGTGnLT~~lLe~~kk-VvA~E~Dprmvael~krv~gtp~-----~~kLqV~~gD~lK~d~P--~fd  125 (315)
T KOG0820|consen   54 ADLKPTDVVLEVGPGTGNLTVKLLEAGKK-VVAVEIDPRMVAELEKRVQGTPK-----SGKLQVLHGDFLKTDLP--RFD  125 (315)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHhcCe-EEEEecCcHHHHHHHHHhcCCCc-----cceeeEEecccccCCCc--ccc
Confidence            34788899999999999999999988775 99999999999999999876432     45788899999877654  699


Q ss_pred             EEeechhhh
Q 018970          233 VIWVQWCIG  241 (348)
Q Consensus       233 ~Ii~~~~l~  241 (348)
                      ++|++....
T Consensus       126 ~cVsNlPyq  134 (315)
T KOG0820|consen  126 GCVSNLPYQ  134 (315)
T ss_pred             eeeccCCcc
Confidence            999865443

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.10  E-value=2.6e-06  Score=70.39  Aligned_cols=83  Identities=20%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             CCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC---c----------eecCCCCceecCH
Q 018970          223 DFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG---F----------VLDKEDRSITRSD  289 (348)
Q Consensus       223 ~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~---~----------~~d~~~~~~~~s~  289 (348)
                      ...+.+++.|+|++..+++|++-++...+++.|++.|||||+|-|+-+.....   +          .-|.-.+.+..+.
T Consensus        40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~  119 (185)
T COG4627          40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTM  119 (185)
T ss_pred             hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHH
Confidence            34466789999999999999998889999999999999999999975433211   0          0111122333466


Q ss_pred             HHHHHHHHhcCCeEEE
Q 018970          290 FYFKELFSRCGLHIYK  305 (348)
Q Consensus       290 ~~l~~l~~~aGf~~v~  305 (348)
                      ..+..++.++||.+--
T Consensus       120 r~m~n~~m~~~~~~kl  135 (185)
T COG4627         120 RMMFNGFMDAGFVVKL  135 (185)
T ss_pred             HHHHHHHHhhhheehh
Confidence            6778888899988543

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.10  E-value=2.9e-05  Score=68.62  Aligned_cols=123  Identities=20%  Similarity=0.276  Sum_probs=90.7

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEE
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF  217 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~  217 (348)
                      .++..++..       -.+.++||||.=||+-+..++...+.  +|+.+|+++...+.+.+..+..|.     ...+++.
T Consensus        63 ~fl~~li~~-------~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~i  130 (237)
T KOG1663|consen   63 QFLQMLIRL-------LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITFI  130 (237)
T ss_pred             HHHHHHHHH-------hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeeee
Confidence            455555542       34579999999999999888877665  899999999999999888776554     5678898


Q ss_pred             EcCCCCC-C-----CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC
Q 018970          218 CVPLQDF-T-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK  280 (348)
Q Consensus       218 ~~d~~~~-~-----~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~  280 (348)
                      .++..+- +     .+.++||+++    +.|..+ +...++.++.+++|+||+|++-.... .+...++
T Consensus       131 ~g~a~esLd~l~~~~~~~tfDfaF----vDadK~-nY~~y~e~~l~Llr~GGvi~~DNvl~-~G~v~~p  193 (237)
T KOG1663|consen  131 EGPALESLDELLADGESGTFDFAF----VDADKD-NYSNYYERLLRLLRVGGVIVVDNVLW-PGVVADP  193 (237)
T ss_pred             ecchhhhHHHHHhcCCCCceeEEE----EccchH-HHHHHHHHHHhhcccccEEEEecccc-CCcccCc
Confidence            8866542 1     2357999998    444443 45689999999999999987754333 3343333

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.07  E-value=6.8e-06  Score=76.49  Aligned_cols=75  Identities=16%  Similarity=0.191  Sum_probs=60.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCC-
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETG-  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~-  229 (348)
                      +.++..+||++||.|..+..++....  ..|+|+|.++.|++.|++++..        ..++.++..|+.++.  .+.+ 
T Consensus        17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i~~~f~~l~~~l~~~~   88 (296)
T PRK00050         17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLVHGNFSNLKEVLAEGL   88 (296)
T ss_pred             CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEEeCCHHHHHHHHHcCC
Confidence            46778999999999999999998864  3799999999999999988743        246889998888754  1112 


Q ss_pred             -ceeEEeec
Q 018970          230 -RYDVIWVQ  237 (348)
Q Consensus       230 -~fD~Ii~~  237 (348)
                       ++|.|++.
T Consensus        89 ~~vDgIl~D   97 (296)
T PRK00050         89 GKVDGILLD   97 (296)
T ss_pred             CccCEEEEC
Confidence             79999864

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.05  E-value=2.1e-05  Score=67.85  Aligned_cols=108  Identities=16%  Similarity=0.082  Sum_probs=80.9

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--C-CCCcee
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P-ETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~-~~~~fD  232 (348)
                      -.+.++||+=+|+|.++...+.++...++.+|.+...+...++++...++     ..+..++..|...+.  . ..+.||
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----~~~~~~~~~da~~~L~~~~~~~~FD  116 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----EGEARVLRNDALRALKQLGTREPFD  116 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----ccceEEEeecHHHHHHhcCCCCccc
Confidence            35689999999999999999999999999999999999999999876543     356777777776431  1 123599


Q ss_pred             EEeechhhhcCChhhHHHHHHH--HHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKR--AKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~--~~~~LkpgG~lii~~  269 (348)
                      +|++-..++.-- -+....+..  -..+|+|+|.+++-.
T Consensus       117 lVflDPPy~~~l-~~~~~~~~~~~~~~~L~~~~~iv~E~  154 (187)
T COG0742         117 LVFLDPPYAKGL-LDKELALLLLEENGWLKPGALIVVEH  154 (187)
T ss_pred             EEEeCCCCccch-hhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence            999988877211 111223333  457899999999865

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=7e-05  Score=66.63  Aligned_cols=139  Identities=20%  Similarity=0.140  Sum_probs=95.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC--CCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~  233 (348)
                      .++..|||+|+.||.++..+++++...|+++|..-.++..--+.-          ...+.+...++..+...  .+..|+
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d----------~rV~~~E~tN~r~l~~~~~~~~~d~  147 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND----------PRVIVLERTNVRYLTPEDFTEKPDL  147 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC----------CcEEEEecCChhhCCHHHcccCCCe
Confidence            456789999999999999999999999999999887775432221          22345555566655422  136789


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe---------cccCCCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE---------NIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~---------~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      |++--+|.     .+..+|..+..+|+|+|.++..-         .....+.+.++..  ...-...+.+.+++.||.+.
T Consensus       148 ~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~--~~~v~~~i~~~~~~~g~~~~  220 (245)
T COG1189         148 IVIDVSFI-----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKL--HAEVLSKIENFAKELGFQVK  220 (245)
T ss_pred             EEEEeehh-----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcch--HHHHHHHHHHHHhhcCcEEe
Confidence            99877666     46689999999999999877642         1111222222211  11344567888888999998


Q ss_pred             EEeecCC
Q 018970          305 KSKDQKG  311 (348)
Q Consensus       305 ~~~~~~~  311 (348)
                      .....+-
T Consensus       221 gl~~Spi  227 (245)
T COG1189         221 GLIKSPI  227 (245)
T ss_pred             eeEccCc
Confidence            8765543

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.02  E-value=1.1e-05  Score=77.66  Aligned_cols=99  Identities=11%  Similarity=0.060  Sum_probs=79.0

Q ss_pred             CCcEEEEeccccHHHHHHHHh--CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCceeEE
Q 018970          158 HLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI  234 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~--~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~I  234 (348)
                      +.+|||+-||+|..+..++.+  +...|+++|+++..++.+++++...+.      .++.+.+.|+..+.. ....||+|
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~~~~~fDvI  118 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRYRNRKFHVI  118 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHHhCCCCCEE
Confidence            358999999999999999987  556899999999999999999865322      246788888776532 12579999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      .+-. +.     ....++..+.+.+++||+|+++
T Consensus       119 dlDP-fG-----s~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       119 DIDP-FG-----TPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             EeCC-CC-----CcHHHHHHHHHhcccCCEEEEE
Confidence            9855 32     3357999999999999999997

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.97  E-value=9.9e-05  Score=72.44  Aligned_cols=132  Identities=21%  Similarity=0.181  Sum_probs=95.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC---Cce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~f  231 (348)
                      ..++.++||+=||.|.++..|+.+ ..+|+|+|+++.+++.|+++++..++      .|++|...+.+++....   ..+
T Consensus       291 ~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~~~ae~~~~~~~~~~~~  363 (432)
T COG2265         291 LAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGI------DNVEFIAGDAEEFTPAWWEGYKP  363 (432)
T ss_pred             hcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHHhhhccccCCC
Confidence            356678999999999999999844 45699999999999999999987654      45899999998876432   478


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCC
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKG  311 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~  311 (348)
                      |+|+....=.-+.    ..+++.+.+ ++|-.+++|+.|..               |...=...+...|+++.+.....-
T Consensus       364 d~VvvDPPR~G~~----~~~lk~l~~-~~p~~IvYVSCNP~---------------TlaRDl~~L~~~gy~i~~v~~~Dm  423 (432)
T COG2265         364 DVVVVDPPRAGAD----REVLKQLAK-LKPKRIVYVSCNPA---------------TLARDLAILASTGYEIERVQPFDM  423 (432)
T ss_pred             CEEEECCCCCCCC----HHHHHHHHh-cCCCcEEEEeCCHH---------------HHHHHHHHHHhCCeEEEEEEEecc
Confidence            9999754422222    256666655 58888999997542               122234567778888766554444


Q ss_pred             CC
Q 018970          312 LP  313 (348)
Q Consensus       312 ~~  313 (348)
                      ||
T Consensus       424 FP  425 (432)
T COG2265         424 FP  425 (432)
T ss_pred             CC
Confidence            44

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.93  E-value=3.2e-05  Score=72.89  Aligned_cols=162  Identities=15%  Similarity=0.083  Sum_probs=91.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh--------CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~--------~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  226 (348)
                      ..++.+|||-.||+|.+...+...        ....++|+|+++.++..|+-++.-.+..    ..+..+...|....+.
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----~~~~~i~~~d~l~~~~  119 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----NSNINIIQGDSLENDK  119 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----CBGCEEEES-TTTSHS
T ss_pred             ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----cccccccccccccccc
Confidence            566778999999999998887753        2237999999999999888654221110    1223466777554332


Q ss_pred             C--CCceeEEeechhhhcC--Ch-----------------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCce
Q 018970          227 E--TGRYDVIWVQWCIGHL--TD-----------------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSI  285 (348)
Q Consensus       227 ~--~~~fD~Ii~~~~l~~~--~~-----------------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~  285 (348)
                      .  ...||+|+++..+...  ..                 ..-..++..+.+.|++||.+.+.-+..   +.+.  .   
T Consensus       120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~---~L~~--~---  191 (311)
T PF02384_consen  120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG---FLFS--S---  191 (311)
T ss_dssp             CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH---HHHG--S---
T ss_pred             cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch---hhhc--c---
Confidence            2  3689999998766644  10                 011258899999999999876654211   1001  0   


Q ss_pred             ecCHHHHHHHH-HhcCCeEEEEeecCCCCccceEEEEEEEeecCC
Q 018970          286 TRSDFYFKELF-SRCGLHIYKSKDQKGLPEELFAVKMYALTAEMP  329 (348)
Q Consensus       286 ~~s~~~l~~l~-~~aGf~~v~~~~~~~~~~~l~~v~~~~l~~~~~  329 (348)
                       .....+++.| +....+.+-.....-|.....+..+..+....+
T Consensus       192 -~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~  235 (311)
T PF02384_consen  192 -SSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKKP  235 (311)
T ss_dssp             -THHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred             -chHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeeccc
Confidence             1124566554 444444433333334555555666677765543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=2.2e-05  Score=65.51  Aligned_cols=133  Identities=14%  Similarity=0.113  Sum_probs=84.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--CCCCCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~f  231 (348)
                      -.+.+|||+|.|--.++-.+.... +. .|...|-+...++..++.........   ..++....-+....  ..+...|
T Consensus        28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~---~tsc~vlrw~~~~aqsq~eq~tF  104 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS---LTSCCVLRWLIWGAQSQQEQHTF  104 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc---cceehhhHHHHhhhHHHHhhCcc
Confidence            445789999999655544443333 32 89999999999988877654310000   01111111111111  1223589


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      |.|++..++-.  ++.-..+++.+...|+|.|.-++..+...             .|.+.+.+.....||.+...
T Consensus       105 DiIlaADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsPRRg-------------~sL~kF~de~~~~gf~v~l~  164 (201)
T KOG3201|consen  105 DIILAADCLFF--DEHHESLVDTIKSLLRPSGRALLFSPRRG-------------QSLQKFLDEVGTVGFTVCLE  164 (201)
T ss_pred             cEEEeccchhH--HHHHHHHHHHHHHHhCcccceeEecCccc-------------chHHHHHHHHHhceeEEEec
Confidence            99999888765  33567889999999999998666543321             46677888888888887653

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.90  E-value=6.9e-05  Score=75.86  Aligned_cols=80  Identities=15%  Similarity=0.132  Sum_probs=54.4

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC---------CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC---
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---  224 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~---------~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~---  224 (348)
                      ...+|||.|||+|.++..++....         ..++++|+++..+..++.++...+.      ..+.+.+.|....   
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------~~~~i~~~d~l~~~~~  104 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------LEINVINFNSLSYVLL  104 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------CCceeeeccccccccc
Confidence            456899999999999988876532         2689999999999999988755321      1123333332211   


Q ss_pred             --CCCCCceeEEeechhhhc
Q 018970          225 --TPETGRYDVIWVQWCIGH  242 (348)
Q Consensus       225 --~~~~~~fD~Ii~~~~l~~  242 (348)
                        ....+.||+|+.+....-
T Consensus       105 ~~~~~~~~fD~IIgNPPy~~  124 (524)
T TIGR02987       105 NIESYLDLFDIVITNPPYGR  124 (524)
T ss_pred             ccccccCcccEEEeCCCccc
Confidence              111257999999876654

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.87  E-value=7.9e-05  Score=72.63  Aligned_cols=104  Identities=16%  Similarity=0.297  Sum_probs=87.1

Q ss_pred             CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeech
Q 018970          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW  238 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~  238 (348)
                      .++|-+|||.-.++..+.+.++..|+-+|+|+-.++.+.......       ..-+.+...|+..+.+++++||+|+.-+
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-------~~~~~~~~~d~~~l~fedESFdiVIdkG  122 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-------RPEMQMVEMDMDQLVFEDESFDIVIDKG  122 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-------CcceEEEEecchhccCCCcceeEEEecC
Confidence            389999999999999999889989999999999999887765332       3458889999999999999999999999


Q ss_pred             hhhcCChhh--------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          239 CIGHLTDDD--------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       239 ~l~~~~~~d--------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .++++-.++        ....+.++.++|+|||+++...
T Consensus       123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence            998774322        2356889999999999877654

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.87  E-value=6.8e-05  Score=65.48  Aligned_cols=105  Identities=19%  Similarity=0.169  Sum_probs=79.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~  233 (348)
                      .++.+||+||-|-|.....+-++-+.+-+.++..|..+...++..-.+       ..++....+-.++..  .+++.||-
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------k~nViil~g~WeDvl~~L~d~~FDG  172 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------KENVIILEGRWEDVLNTLPDKHFDG  172 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------ccceEEEecchHhhhccccccCcce
Confidence            567899999999999988776666667899999999999988765432       346666666555532  44678999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |+--..-.+-  +|+..+.+.+.++|||+|++-+-.
T Consensus       173 I~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~SyfN  206 (271)
T KOG1709|consen  173 IYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSYFN  206 (271)
T ss_pred             eEeechhhHH--HHHHHHHHHHhhhcCCCceEEEec
Confidence            9864332333  378899999999999999987643

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.86  E-value=9.2e-06  Score=68.89  Aligned_cols=73  Identities=18%  Similarity=0.318  Sum_probs=53.1

Q ss_pred             cEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--CCCc-eeEEee
Q 018970          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGR-YDVIWV  236 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~-fD~Ii~  236 (348)
                      .|+|+-||.|..+.+++.. +..|+++|+++..++.|+.++.-.|.     ..+++|.++|+.++..  .... ||+|++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~~~~~~~~~~~~~D~vFl   75 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFFELLKRLKSNKIFDVVFL   75 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHHHHHhhccccccccEEEE
Confidence            6999999999999999965 55699999999999999999876554     5689999999877532  1122 899997


Q ss_pred             ch
Q 018970          237 QW  238 (348)
Q Consensus       237 ~~  238 (348)
                      +.
T Consensus        76 SP   77 (163)
T PF09445_consen   76 SP   77 (163)
T ss_dssp             --
T ss_pred             CC
Confidence            53

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.86  E-value=0.0001  Score=67.92  Aligned_cols=93  Identities=13%  Similarity=0.115  Sum_probs=71.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC---Cce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~f  231 (348)
                      +.++..|||+|+|+|.++..|++.+ ..|+++|+++.+++..++.+..        ..++++...|+.++....   +..
T Consensus        28 ~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~--------~~~~~vi~~D~l~~~~~~~~~~~~   98 (262)
T PF00398_consen   28 LSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS--------NPNVEVINGDFLKWDLYDLLKNQP   98 (262)
T ss_dssp             CGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT--------CSSEEEEES-TTTSCGGGHCSSSE
T ss_pred             CCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh--------cccceeeecchhccccHHhhcCCc
Confidence            4577899999999999999999887 6799999999999999998864        468999999999987543   356


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCC
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKP  261 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkp  261 (348)
                      ..|+++-.. +++    ..++.++...-+.
T Consensus        99 ~~vv~NlPy-~is----~~il~~ll~~~~~  123 (262)
T PF00398_consen   99 LLVVGNLPY-NIS----SPILRKLLELYRF  123 (262)
T ss_dssp             EEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred             eEEEEEecc-cch----HHHHHHHhhcccc
Confidence            677777665 333    3555555553333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.82  E-value=8.7e-05  Score=77.60  Aligned_cols=109  Identities=14%  Similarity=0.090  Sum_probs=79.7

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-------------------------------------------CCcEEEEcCCHHH
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSHF  192 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-------------------------------------------~~~v~~vD~S~~~  192 (348)
                      .++..++|-.||+|.+.+..+...                                           ...++|+|+++.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            456789999999999987765420                                           0148999999999


Q ss_pred             HHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC--CCceeEEeechhhhcC-C-hhhHHHHHHHHHHcCC---CCcEE
Q 018970          193 LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIGHL-T-DDDFVSFFKRAKVGLK---PGGFF  265 (348)
Q Consensus       193 l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~Ii~~~~l~~~-~-~~d~~~~l~~~~~~Lk---pgG~l  265 (348)
                      ++.|++++...|+     ...+++...|+.+++.+  .++||+|+++..+..- . ..++..+.+.+.+.|+   +|+.+
T Consensus       269 v~~A~~N~~~~g~-----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~  343 (702)
T PRK11783        269 IQAARKNARRAGV-----AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNA  343 (702)
T ss_pred             HHHHHHHHHHcCC-----CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeE
Confidence            9999999987655     45688999999887643  2579999999776432 1 2345556666555554   88877


Q ss_pred             EEEe
Q 018970          266 VLKE  269 (348)
Q Consensus       266 ii~~  269 (348)
                      ++..
T Consensus       344 ~llt  347 (702)
T PRK11783        344 ALFS  347 (702)
T ss_pred             EEEe
Confidence            6643

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.82  E-value=6.5e-06  Score=71.34  Aligned_cols=96  Identities=22%  Similarity=0.208  Sum_probs=58.3

Q ss_pred             CCCcEEEEeccccHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC------C---
Q 018970          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------T---  225 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~--~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~------~---  225 (348)
                      ++.+|||+||++|.++..++.+.  ...|+++|+.+.--                 ..++.+.++|+.+.      .   
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~-----------------~~~~~~i~~d~~~~~~~~~i~~~~   85 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP-----------------LQNVSFIQGDITNPENIKDIRKLL   85 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccccc-----------------ccceeeeecccchhhHHHhhhhhc
Confidence            45899999999999999999777  34899999876500                 12233333333221      1   


Q ss_pred             -CCCCceeEEeechhhhcCCh---------hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 -PETGRYDVIWVQWCIGHLTD---------DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~---------~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                       ...+.||+|++-.+......         .-....+.-+...|+|||.+++.-
T Consensus        86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~  139 (181)
T PF01728_consen   86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV  139 (181)
T ss_dssp             GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence             11258999998663222111         123455666778899999999875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.80  E-value=5.2e-05  Score=64.84  Aligned_cols=101  Identities=16%  Similarity=0.075  Sum_probs=80.2

Q ss_pred             CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeech
Q 018970          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW  238 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~  238 (348)
                      ..+.|+|+|+|.++.- +.+....|.+++.+|...+.|.+++.-.|      ..++++..+|+.+..++  ..|+|+|-+
T Consensus        34 d~~~DLGaGsGiLs~~-Aa~~A~rViAiE~dPk~a~~a~eN~~v~g------~~n~evv~gDA~~y~fe--~ADvvicEm  104 (252)
T COG4076          34 DTFADLGAGSGILSVV-AAHAAERVIAIEKDPKRARLAEENLHVPG------DVNWEVVVGDARDYDFE--NADVVICEM  104 (252)
T ss_pred             hceeeccCCcchHHHH-HHhhhceEEEEecCcHHHHHhhhcCCCCC------CcceEEEeccccccccc--ccceeHHHH
Confidence            5799999999999884 44667789999999999999999964322      36889999999988773  579999855


Q ss_pred             hhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       239 ~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      .=..+-++....+++.+...|+-+|.++=.
T Consensus       105 lDTaLi~E~qVpV~n~vleFLr~d~tiiPq  134 (252)
T COG4076         105 LDTALIEEKQVPVINAVLEFLRYDPTIIPQ  134 (252)
T ss_pred             hhHHhhcccccHHHHHHHHHhhcCCccccH
Confidence            433334456788999999999999998754

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.79  E-value=0.00069  Score=59.95  Aligned_cols=145  Identities=13%  Similarity=0.019  Sum_probs=89.3

Q ss_pred             cCCccCCCCCcEEEEeccccHHHHHHHHhCC-C-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--
Q 018970          150 FPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--  225 (348)
Q Consensus       150 l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--  225 (348)
                      +....+.++.+||-+|+.+|....++.+--. . .|++++.|+......-+.+..        ..|+--+-.|+..-.  
T Consensus        66 l~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--------R~NIiPIl~DAr~P~~Y  137 (229)
T PF01269_consen   66 LENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--------RPNIIPILEDARHPEKY  137 (229)
T ss_dssp             -S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--------STTEEEEES-TTSGGGG
T ss_pred             ccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--------CCceeeeeccCCChHHh
Confidence            3334578999999999999999888876532 2 699999999665544433332        246666667775421  


Q ss_pred             -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecC-HH---HHHHHHHhcC
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRS-DF---YFKELFSRCG  300 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s-~~---~l~~l~~~aG  300 (348)
                       .--+.+|+|++--+-    +++..-++.++...||+||.+++.-....    .|.     +.+ .+   .-.+.+++.|
T Consensus       138 ~~lv~~VDvI~~DVaQ----p~Qa~I~~~Na~~fLk~gG~~~i~iKa~s----iD~-----t~~p~~vf~~e~~~L~~~~  204 (229)
T PF01269_consen  138 RMLVEMVDVIFQDVAQ----PDQARIAALNARHFLKPGGHLIISIKARS----IDS-----TADPEEVFAEEVKKLKEEG  204 (229)
T ss_dssp             TTTS--EEEEEEE-SS----TTHHHHHHHHHHHHEEEEEEEEEEEEHHH----H-S-----SSSHHHHHHHHHHHHHCTT
T ss_pred             hcccccccEEEecCCC----hHHHHHHHHHHHhhccCCcEEEEEEecCc----ccC-----cCCHHHHHHHHHHHHHHcC
Confidence             112579999975441    23667788999999999999988642110    010     011 11   1245667789


Q ss_pred             CeEEEEeecCCCCcc
Q 018970          301 LHIYKSKDQKGLPEE  315 (348)
Q Consensus       301 f~~v~~~~~~~~~~~  315 (348)
                      |++.+.....+|..+
T Consensus       205 ~~~~e~i~LePy~~d  219 (229)
T PF01269_consen  205 FKPLEQITLEPYERD  219 (229)
T ss_dssp             CEEEEEEE-TTTSTT
T ss_pred             CChheEeccCCCCCC
Confidence            999999988888665

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=0.00072  Score=59.33  Aligned_cols=129  Identities=16%  Similarity=0.056  Sum_probs=83.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------  225 (348)
                      +.++..|+|+||-+|.++..+++....  .|+++|+.|--.                 ..++.+++.|+.+-+       
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------------~~~V~~iq~d~~~~~~~~~l~~  105 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------------IPGVIFLQGDITDEDTLEKLLE  105 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------------CCCceEEeeeccCccHHHHHHH
Confidence            567899999999999999988776554  499999754211                 345889999987754       


Q ss_pred             -CCCCceeEEeechhh--------hcCChhh-HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHH
Q 018970          226 -PETGRYDVIWVQWCI--------GHLTDDD-FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKEL  295 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l--------~~~~~~d-~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l  295 (348)
                       .....+|+|++-.+-        +|...-. ...++.-+..+|+|||.+++......              ..+.+...
T Consensus       106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~--------------~~~~~l~~  171 (205)
T COG0293         106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE--------------DFEDLLKA  171 (205)
T ss_pred             HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC--------------CHHHHHHH
Confidence             222457999964332        3332212 23467777889999999999863221              12334444


Q ss_pred             HHhcCCeEEEEeecCCCCcc
Q 018970          296 FSRCGLHIYKSKDQKGLPEE  315 (348)
Q Consensus       296 ~~~aGf~~v~~~~~~~~~~~  315 (348)
                      +++ .|+.+.......+...
T Consensus       172 ~~~-~F~~v~~~KP~aSR~~  190 (205)
T COG0293         172 LRR-LFRKVKIFKPKASRKR  190 (205)
T ss_pred             HHH-hhceeEEecCccccCC
Confidence            443 5777776665555443

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.71  E-value=0.00018  Score=59.85  Aligned_cols=95  Identities=16%  Similarity=0.173  Sum_probs=62.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHH-----hCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~-----~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  229 (348)
                      ..+..+|+|+|||.|+++..|+.     .....|+++|.++..++.++++....+.   ....+..+...+..+... ..
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~   98 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS---DLEKRLSFIQGDIADESS-SD   98 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc---hhhccchhhccchhhhcc-cC
Confidence            35677999999999999999987     4333799999999999999887665321   112345555555544322 35


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHH
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKV  257 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~  257 (348)
                      ..++++.-++-..++    ..+|+...+
T Consensus        99 ~~~~~vgLHaCG~Ls----~~~l~~~~~  122 (141)
T PF13679_consen   99 PPDILVGLHACGDLS----DRALRLFIR  122 (141)
T ss_pred             CCeEEEEeecccchH----HHHHHHHHH
Confidence            678888655444444    234444444

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.71  E-value=0.0003  Score=66.23  Aligned_cols=123  Identities=15%  Similarity=0.097  Sum_probs=79.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.++||+||++|.++..+++++. .|++||.++ |-.    .+..        ..++.....|...+.++.+.+|.|
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~----~L~~--------~~~V~h~~~d~fr~~p~~~~vDwv  274 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQ----SLMD--------TGQVEHLRADGFKFRPPRKNVDWL  274 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCH----hhhC--------CCCEEEEeccCcccCCCCCCCCEE
Confidence            46788999999999999999998888 699999654 222    1222        356888888777765545789999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCC--cEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPG--GFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLH  302 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~Lkpg--G~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~  302 (348)
                      +|-.+-      .+..+.+-+.++|..|  ..+|+.-....     ...........+.+.+.+.++|..
T Consensus       275 VcDmve------~P~rva~lm~~Wl~~g~cr~aIfnLKlpm-----k~r~~~v~~~l~~i~~~l~~~g~~  333 (357)
T PRK11760        275 VCDMVE------KPARVAELMAQWLVNGWCREAIFNLKLPM-----KKRYEEVRQCLELIEEQLDENGIN  333 (357)
T ss_pred             EEeccc------CHHHHHHHHHHHHhcCcccEEEEEEEcCC-----CCCHHHHHHHHHHHHHHHHHcCCc
Confidence            986662      4567778888888776  23333321110     000011112334467777788874

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.70  E-value=0.0006  Score=61.73  Aligned_cols=102  Identities=13%  Similarity=0.047  Sum_probs=79.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCc
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR  230 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~  230 (348)
                      +.|+.+|||-|.|+|.++.+++.....  ++.-+|+-..-.+.|.+.+.+.++     +.++++..-|+...-  .....
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----~~~vt~~hrDVc~~GF~~ks~~  177 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----GDNVTVTHRDVCGSGFLIKSLK  177 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----CcceEEEEeecccCCccccccc
Confidence            789999999999999999999866432  799999999999999999998875     788999988887643  33467


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCc-EEEEE
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVLK  268 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG-~lii~  268 (348)
                      +|.|+.-.     +  .+-.++-.++.+||.+| +|+.-
T Consensus       178 aDaVFLDl-----P--aPw~AiPha~~~lk~~g~r~csF  209 (314)
T KOG2915|consen  178 ADAVFLDL-----P--APWEAIPHAAKILKDEGGRLCSF  209 (314)
T ss_pred             cceEEEcC-----C--ChhhhhhhhHHHhhhcCceEEec
Confidence            89888633     3  34466777778899876 44443

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.69  E-value=0.00086  Score=64.42  Aligned_cols=127  Identities=19%  Similarity=0.215  Sum_probs=76.7

Q ss_pred             cEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-------------
Q 018970          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------------  226 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------------  226 (348)
                      +|||+=||.|.++..|+.. +..|+|+|+++.+++.|++++...++      .|++|.+.+.+++..             
T Consensus       199 ~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~~~~~~~~~~~~~r~~~~~~~  271 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRGDAEDFAKALAKAREFNRLKG  271 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE--SHHCCCHHCCS-GGTTGGG
T ss_pred             cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEeeccchhHHHHhhHHHHhhhh
Confidence            7999999999999998844 45699999999999999999876543      578888876654321             


Q ss_pred             ---CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeE
Q 018970          227 ---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHI  303 (348)
Q Consensus       227 ---~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~  303 (348)
                         ....+|+|+.-..=.-+.    ..+++.+.+   +.=+++|+.+..           .+.+   ++. .|.+ ||++
T Consensus       272 ~~~~~~~~d~vilDPPR~G~~----~~~~~~~~~---~~~ivYvSCnP~-----------tlaR---Dl~-~L~~-~y~~  328 (352)
T PF05958_consen  272 IDLKSFKFDAVILDPPRAGLD----EKVIELIKK---LKRIVYVSCNPA-----------TLAR---DLK-ILKE-GYKL  328 (352)
T ss_dssp             S-GGCTTESEEEE---TT-SC----HHHHHHHHH---SSEEEEEES-HH-----------HHHH---HHH-HHHC-CEEE
T ss_pred             hhhhhcCCCEEEEcCCCCCch----HHHHHHHhc---CCeEEEEECCHH-----------HHHH---HHH-HHhh-cCEE
Confidence               112589998754433333    133444433   345677775321           1112   232 3443 9999


Q ss_pred             EEEeecCCCCccc
Q 018970          304 YKSKDQKGLPEEL  316 (348)
Q Consensus       304 v~~~~~~~~~~~l  316 (348)
                      ......--||...
T Consensus       329 ~~v~~~DmFP~T~  341 (352)
T PF05958_consen  329 EKVQPVDMFPQTH  341 (352)
T ss_dssp             EEEEEE-SSTTSS
T ss_pred             EEEEEeecCCCCC
Confidence            8888777777643

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.67  E-value=0.00054  Score=64.44  Aligned_cols=135  Identities=19%  Similarity=0.286  Sum_probs=88.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHH--hCCCCCCCcCCCcceeEEEcCCCCCCC-CCCc
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFTP-ETGR  230 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~--~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~  230 (348)
                      +...+||-+|.|.|..++.++ +++  .+++.+|.+|+|++.++.+  ....+ .+.=...++++...|+.+|-. ..+.
T Consensus       288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N-~~sf~dpRv~Vv~dDAf~wlr~a~~~  365 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALN-QGSFSDPRVTVVNDDAFQWLRTAADM  365 (508)
T ss_pred             cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhc-cCCccCCeeEEEeccHHHHHHhhccc
Confidence            445689999999999999988 444  4899999999999999843  21110 001113578888888877652 2358


Q ss_pred             eeEEeec------hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          231 YDVIWVQ------WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       231 fD~Ii~~------~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      ||+||.-      .++..+-   -..|..-+.+.|+++|.+++.....   +.   ....+.+    +..-++++||.+.
T Consensus       366 fD~vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~VvQags~---y~---tp~vfw~----i~aTik~AG~~~~  432 (508)
T COG4262         366 FDVVIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVVQAGSP---YF---TPRVFWR----IDATIKSAGYRVW  432 (508)
T ss_pred             ccEEEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEEecCCC---cc---CCceeee----ehhHHHhCcceee
Confidence            9999852      2222211   3568899999999999999864221   10   0111111    3456778887755


Q ss_pred             E
Q 018970          305 K  305 (348)
Q Consensus       305 ~  305 (348)
                      -
T Consensus       433 P  433 (508)
T COG4262         433 P  433 (508)
T ss_pred             e
Confidence            4

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.66  E-value=5.2e-05  Score=66.43  Aligned_cols=100  Identities=18%  Similarity=0.180  Sum_probs=76.2

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD  232 (348)
                      ....|+|.-||.|+.+..++.+++. |.++|++|.-+..|+.+++-.|.     ..+++|.++|+.+..    +....+|
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~-VisIdiDPikIa~AkhNaeiYGI-----~~rItFI~GD~ld~~~~lq~~K~~~~  167 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGV-----PDRITFICGDFLDLASKLKADKIKYD  167 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCe-EEEEeccHHHHHHHhccceeecC-----CceeEEEechHHHHHHHHhhhhheee
Confidence            3458999999999999999988886 99999999999999999987766     568999999987642    3334578


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcE
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGF  264 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~  264 (348)
                      +|+.+.....-.  ....-+-.+...++|.|.
T Consensus       168 ~vf~sppwggp~--y~~~~~~DL~~~~~p~~~  197 (263)
T KOG2730|consen  168 CVFLSPPWGGPS--YLRADVYDLETHLKPMGT  197 (263)
T ss_pred             eeecCCCCCCcc--hhhhhhhhhhhhcchhHH
Confidence            888776554422  344445556666676654

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.65  E-value=0.00029  Score=60.86  Aligned_cols=100  Identities=19%  Similarity=0.083  Sum_probs=75.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      .-.+.+|||+|+|+|..++.-+..+...|...|+.|..+...+-+.+.+       +.++.+...|+..   ++..||+|
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~an-------gv~i~~~~~d~~g---~~~~~Dl~  146 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAAN-------GVSILFTHADLIG---SPPAFDLL  146 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhc-------cceeEEeeccccC---CCcceeEE
Confidence            4567899999999999999888888889999999988888777776654       3467787777765   34679999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      +...++..=+  .-..++. +.+.|+..|..++
T Consensus       147 LagDlfy~~~--~a~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         147 LAGDLFYNHT--EADRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             EeeceecCch--HHHHHHH-HHHHHHhCCCEEE
Confidence            9988877544  3345566 6666666665554

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.63  E-value=0.00047  Score=60.99  Aligned_cols=111  Identities=18%  Similarity=0.162  Sum_probs=64.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhC-------CCCCCCcCCCcceeEEEcCCCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLA-------PENHMAPDMHKATNFFCVPLQDFTP  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~-------~~~~~~~~~~~~i~~~~~d~~~~~~  226 (348)
                      ++++...+|||||.|......+.. ++..+.|+|+.+...+.|+....       ..|.   . ...+++..+|+.+.+.
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~---~-~~~v~l~~gdfl~~~~  115 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK---R-PGKVELIHGDFLDPDF  115 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-------EEEEECS-TTTHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc---c-cccceeeccCccccHh
Confidence            678889999999999998776644 45569999999998887765321       1111   0 2457778888765331


Q ss_pred             C---CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          227 E---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       227 ~---~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                      .   -...|+|++++..  ++ +++...|.+...-||+|-.++-.....
T Consensus       116 ~~~~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs~~~~~  161 (205)
T PF08123_consen  116 VKDIWSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIISTKPFC  161 (205)
T ss_dssp             HHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEESS-SS
T ss_pred             HhhhhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEECCCcC
Confidence            1   0246999997763  22 366777788888899988876544433

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.58  E-value=0.0022  Score=56.56  Aligned_cols=129  Identities=17%  Similarity=0.053  Sum_probs=93.8

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .+.++.||||-.|++..++...+.. .+++.|+++.-++.|.+++...++     ...++...+|...--..+..+|+|+
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----~~~i~vr~~dgl~~l~~~d~~d~iv   90 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----SERIDVRLGDGLAVLELEDEIDVIV   90 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----cceEEEeccCCccccCccCCcCEEE
Confidence            4456999999999999999987765 899999999999999999988665     4567777777643223334799998


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      ..++=..    -+..++.+-.+-|+-=-.+++..+                .....+++++...+|.++.+....
T Consensus        91 IAGMGG~----lI~~ILee~~~~l~~~~rlILQPn----------------~~~~~LR~~L~~~~~~I~~E~ile  145 (226)
T COG2384          91 IAGMGGT----LIREILEEGKEKLKGVERLILQPN----------------IHTYELREWLSANSYEIKAETILE  145 (226)
T ss_pred             EeCCcHH----HHHHHHHHhhhhhcCcceEEECCC----------------CCHHHHHHHHHhCCceeeeeeeec
Confidence            7665332    455677777776653234444332                134578999999999998866544

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.56  E-value=0.001  Score=63.54  Aligned_cols=110  Identities=15%  Similarity=0.061  Sum_probs=81.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC----------------------------------------cEEEEcCCHHHHH
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN----------------------------------------EVDLLEPVSHFLD  194 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~----------------------------------------~v~~vD~S~~~l~  194 (348)
                      ..++..++|-=||+|.+.+..+....+                                        .+.|+|+++.+++
T Consensus       189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~  268 (381)
T COG0116         189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE  268 (381)
T ss_pred             CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence            455578999999999999887755421                                        2779999999999


Q ss_pred             HHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhh-cCCh-hhHH----HHHHHHHHcCCCCcEEEEE
Q 018970          195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLTD-DDFV----SFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       195 ~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~-~~~~-~d~~----~~l~~~~~~LkpgG~lii~  268 (348)
                      .|+.|+...|+     ...|.|.+.|+.++..+.+.+|+||++.... -+.+ ..+.    .+.+.+.+.++--+.++++
T Consensus       269 ~Ak~NA~~AGv-----~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t  343 (381)
T COG0116         269 GAKANARAAGV-----GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHHHHhcCC-----CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            99999988766     6779999999999886547899999986654 1221 1222    3444555666655666665


Q ss_pred             e
Q 018970          269 E  269 (348)
Q Consensus       269 ~  269 (348)
                      .
T Consensus       344 t  344 (381)
T COG0116         344 T  344 (381)
T ss_pred             c
Confidence            4

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00016  Score=67.55  Aligned_cols=115  Identities=16%  Similarity=0.066  Sum_probs=71.7

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      +.+|||||.|+|.-+.++-.-.++  .++.++.|+..-+...........  .-......-++.|-.+++.. ..|++|+
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--~~td~r~s~vt~dRl~lp~a-d~ytl~i  190 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST--EKTDWRASDVTEDRLSLPAA-DLYTLAI  190 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc--ccCCCCCCccchhccCCCcc-ceeehhh
Confidence            456999999999877765544554  788899988766655443322100  00011111122233334333 5788888


Q ss_pred             echhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCC
Q 018970          236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSG  275 (348)
Q Consensus       236 ~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~  275 (348)
                      ...-|-+... ..+...++++..++.|||.|+|.|.....|
T Consensus       191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G  231 (484)
T COG5459         191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG  231 (484)
T ss_pred             hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence            7666655543 446668999999999999999988544433

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.55  E-value=0.00038  Score=64.06  Aligned_cols=107  Identities=19%  Similarity=0.202  Sum_probs=67.5

Q ss_pred             CCCcEEEEeccccHHHHHHHHh--CCC-cEEEEcCCHHHHHHHHHHhC-CCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIR--YFN-EVDLLEPVSHFLDAARESLA-PENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~--~~~-~v~~vD~S~~~l~~a~~~~~-~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      .+.+|+=||||.=-++..++.+  +.. .|+++|+++..++.+++.+. ..++     ...+.|+++|..+....-..||
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~~~~~dl~~~D  194 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVLDVTYDLKEYD  194 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-GG----S
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchhccccccccCC
Confidence            4569999999998887666653  222 68999999999999998776 3232     5679999999877654446899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|+...-... +.++-.+++.++.+.++||..+++..
T Consensus       195 vV~lAalVg~-~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  195 VVFLAALVGM-DAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             EEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             EEEEhhhccc-ccchHHHHHHHHHhhCCCCcEEEEec
Confidence            9997654442 23456799999999999999999874

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.46  E-value=0.0013  Score=63.22  Aligned_cols=109  Identities=22%  Similarity=0.185  Sum_probs=81.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC---cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET  228 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~---~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~  228 (348)
                      +.++.+|||+.++.|.=|.++++....   .|+++|.|+.-+...++++.+.|.      .++.....|...++   ...
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------~nv~~~~~d~~~~~~~~~~~  227 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------RNVIVVNKDARRLAELLPGG  227 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------CceEEEeccccccccccccc
Confidence            788899999999999999999877553   369999999999999999988765      34566777765543   222


Q ss_pred             CceeEEee------chhhhc-------CChhh-------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          229 GRYDVIWV------QWCIGH-------LTDDD-------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       229 ~~fD~Ii~------~~~l~~-------~~~~d-------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +.||.|+.      .++++-       .+..+       ...+|..+.++|||||.|+.++
T Consensus       228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST  288 (355)
T COG0144         228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST  288 (355)
T ss_pred             CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            35999984      233321       11111       3568999999999999999875

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.45  E-value=0.00031  Score=58.09  Aligned_cols=58  Identities=19%  Similarity=0.273  Sum_probs=46.4

Q ss_pred             cEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC
Q 018970          160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD  223 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~  223 (348)
                      +|||||||.|.++..++..++. +|+++|+++.+.+.+++++...++      .++.+....+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeeeC
Confidence            4899999999999999877765 799999999999999998765432      246666665544

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.40  E-value=0.0063  Score=52.96  Aligned_cols=149  Identities=14%  Similarity=0.091  Sum_probs=98.0

Q ss_pred             hcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--
Q 018970          149 RFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--  225 (348)
Q Consensus       149 ~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--  225 (348)
                      -+...++.++.+||=+|+.+|....++..--.. .+++++.|+.+....-..+.+        ..|+--+-.|+..-.  
T Consensus        68 Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--------R~Ni~PIL~DA~~P~~Y  139 (231)
T COG1889          68 GLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--------RPNIIPILEDARKPEKY  139 (231)
T ss_pred             CcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--------CCCceeeecccCCcHHh
Confidence            344456889999999999999998888755333 599999999988776665544        245555566664321  


Q ss_pred             -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCH-HHH---HHHHHhcC
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSD-FYF---KELFSRCG  300 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~-~~l---~~l~~~aG  300 (348)
                       .--+..|+|+.--+    .+....-+..++...||+||.++++-....    .|     .+.+. +-+   .+.+++.|
T Consensus       140 ~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArS----Id-----vT~dp~~vf~~ev~kL~~~~  206 (231)
T COG1889         140 RHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARS----ID-----VTADPEEVFKDEVEKLEEGG  206 (231)
T ss_pred             hhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEEEeec----cc-----ccCCHHHHHHHHHHHHHhcC
Confidence             11146898886322    223566778899999999997766532111    01     11112 222   34567789


Q ss_pred             CeEEEEeecCCCCccceE
Q 018970          301 LHIYKSKDQKGLPEELFA  318 (348)
Q Consensus       301 f~~v~~~~~~~~~~~l~~  318 (348)
                      |++.+.....++..+.+-
T Consensus       207 f~i~e~~~LePye~DH~~  224 (231)
T COG1889         207 FEILEVVDLEPYEKDHAL  224 (231)
T ss_pred             ceeeEEeccCCcccceEE
Confidence            999999998888776443

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.37  E-value=0.00053  Score=67.27  Aligned_cols=125  Identities=14%  Similarity=0.192  Sum_probs=82.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHH----HHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSH----FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~----~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      .-..|+|..+|.|.++.+|.+..   |+....-+.    .+...    -+.|+        +.....--+.|+.-+.+||
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vI----ydRGL--------IG~yhDWCE~fsTYPRTYD  429 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVI----YDRGL--------IGVYHDWCEAFSTYPRTYD  429 (506)
T ss_pred             ceeeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhh----hhccc--------chhccchhhccCCCCcchh
Confidence            34579999999999999987542   444443322    22211    12222        2222111233443348999


Q ss_pred             EEeechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCC
Q 018970          233 VIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKG  311 (348)
Q Consensus       233 ~Ii~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~  311 (348)
                      +|++...|....+ -++..++-+|-|+|+|||.++|.+...               -.+.++.+++...++......+.+
T Consensus       430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~---------------vl~~v~~i~~~lrW~~~~~d~e~g  494 (506)
T PF03141_consen  430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD---------------VLEKVKKIAKSLRWEVRIHDTEDG  494 (506)
T ss_pred             heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH---------------HHHHHHHHHHhCcceEEEEecCCC
Confidence            9999999988764 458889999999999999999987431               235678888888888666555443

; GO: 0008168 methyltransferase activity

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.25  E-value=0.0013  Score=59.38  Aligned_cols=153  Identities=12%  Similarity=0.068  Sum_probs=88.4

Q ss_pred             hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcc
Q 018970          135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA  213 (348)
Q Consensus       135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~  213 (348)
                      +....+++..++..      .+++.+|+|||||---++..+...... .++++|++..+++.....+...       +..
T Consensus        89 l~~Ld~fY~~if~~------~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-------~~~  155 (251)
T PF07091_consen   89 LPNLDEFYDEIFGR------IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-------GVP  155 (251)
T ss_dssp             GGGHHHHHHHHCCC------S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-------T-C
T ss_pred             hhhHHHHHHHHHhc------CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-------CCC
Confidence            44455555555542      456789999999999999887755433 7999999999999998876553       345


Q ss_pred             eeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHH
Q 018970          214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFK  293 (348)
Q Consensus       214 i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~  293 (348)
                      .++...|+..-+++ ...|+..+.=+++.+........++-+.. +. .=.++|+.+...-+   ....+....-..+++
T Consensus       156 ~~~~v~Dl~~~~~~-~~~DlaLllK~lp~le~q~~g~g~~ll~~-~~-~~~~vVSfPtrSL~---gR~~gm~~~y~~~fe  229 (251)
T PF07091_consen  156 HDARVRDLLSDPPK-EPADLALLLKTLPCLERQRRGAGLELLDA-LR-SPHVVVSFPTRSLG---GRNKGMEQTYSAWFE  229 (251)
T ss_dssp             EEEEEE-TTTSHTT-SEESEEEEET-HHHHHHHSTTHHHHHHHH-SC-ESEEEEEEES----------TTHHHCHHHHHH
T ss_pred             cceeEeeeeccCCC-CCcchhhHHHHHHHHHHHhcchHHHHHHH-hC-CCeEEEeccccccc---cCccccccCHHHHHH
Confidence            67777787765444 67999998877776653222222322222 22 22566665432100   111112223345567


Q ss_pred             HHHHhcCCeEEEE
Q 018970          294 ELFSRCGLHIYKS  306 (348)
Q Consensus       294 ~l~~~aGf~~v~~  306 (348)
                      ..+...|+.+-+.
T Consensus       230 ~~~~~~~~~~~~~  242 (251)
T PF07091_consen  230 ALAAERGWIVDRL  242 (251)
T ss_dssp             HHCCTTCEEEEEE
T ss_pred             HhcccCCceeeee
Confidence            7777777774443

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.09  E-value=0.015  Score=53.96  Aligned_cols=146  Identities=15%  Similarity=0.103  Sum_probs=93.1

Q ss_pred             cEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC--CCceeEEeec
Q 018970          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQ  237 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~Ii~~  237 (348)
                      +|+|+-||.|.++..+...++..+.++|+++.+++..+.++...            +...|+.++...  .+.+|+|+..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~------------~~~~Di~~~~~~~~~~~~D~l~~g   69 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------------LIEGDITKIDEKDFIPDIDLLTGG   69 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC------------CccCccccCchhhcCCCCCEEEeC
Confidence            69999999999999988778888899999999999998887541            344566665432  2579999975


Q ss_pred             hhhhcCCh-------hh-HHHH---HHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          238 WCIGHLTD-------DD-FVSF---FKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       238 ~~l~~~~~-------~d-~~~~---l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      .....+..       +| ...+   +-++.+.++|  .+++.||+..-..    ..  .......+.+.|++.||.+...
T Consensus        70 pPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~g~~~----~~--~~~~~~~i~~~l~~~GY~~~~~  141 (275)
T cd00315          70 FPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKP--KYFLLENVKGLLT----HD--NGNTLKVILNTLEELGYNVYWK  141 (275)
T ss_pred             CCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCC--CEEEEEcCcchhc----cC--chHHHHHHHHHHHhCCcEEEEE
Confidence            43332210       11 1112   2234444566  4777787743111    00  0123456888899999997664


Q ss_pred             ee---cCCCCccceEEEEEEEe
Q 018970          307 KD---QKGLPEELFAVKMYALT  325 (348)
Q Consensus       307 ~~---~~~~~~~l~~v~~~~l~  325 (348)
                      ..   ..+.|..--.+.+.+.+
T Consensus       142 ~l~a~~~GvPQ~R~R~~~ia~~  163 (275)
T cd00315         142 LLNASDYGVPQNRERVFIIGIR  163 (275)
T ss_pred             EEEHHHcCCCCCCcEEEEEEEe
Confidence            43   34567665566666655

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.04  E-value=0.00088  Score=65.75  Aligned_cols=118  Identities=15%  Similarity=0.088  Sum_probs=78.7

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV  219 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~  219 (348)
                      +.|-..+.++..   ++.+..+||+-||||.++..++ ++...|.|+++++..++.|+.++...|.      .|++|+++
T Consensus       369 evLys~i~e~~~---l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi~g  438 (534)
T KOG2187|consen  369 EVLYSTIGEWAG---LPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQINGI------SNATFIVG  438 (534)
T ss_pred             HHHHHHHHHHhC---CCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcCc------cceeeeec
Confidence            344444444444   6777899999999999999887 6666799999999999999999887654      68999999


Q ss_pred             CCCCCCC-----CCCceeEEeechhhh-cCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          220 PLQDFTP-----ETGRYDVIWVQWCIG-HLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       220 d~~~~~~-----~~~~fD~Ii~~~~l~-~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      -++++-.     ..++=++|.....-. -+.    ..+++.+...-.|--.++++.+.
T Consensus       439 qaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh----~~~ik~l~~~~~~~rlvyvSCn~  492 (534)
T KOG2187|consen  439 QAEDLFPSLLTPCCDSETLVAIIDPPRKGLH----MKVIKALRAYKNPRRLVYVSCNP  492 (534)
T ss_pred             chhhccchhcccCCCCCceEEEECCCccccc----HHHHHHHHhccCccceEEEEcCH
Confidence            5555321     112334333222111 111    35666666665577777777654

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.00  E-value=0.0002  Score=56.17  Aligned_cols=99  Identities=20%  Similarity=0.248  Sum_probs=42.0

Q ss_pred             EEEeccccHHHHHHHHhCC----CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeEEe
Q 018970          162 LDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW  235 (348)
Q Consensus       162 LDvGcG~G~~~~~la~~~~----~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~Ii  235 (348)
                      ||||+..|..+..+++...    ..++++|..+. .+.+++.+.+.++     ..++++..++..+.-  ...++||+|+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----~~~~~~~~g~s~~~l~~~~~~~~dli~   74 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----SDRVEFIQGDSPDFLPSLPDGPIDLIF   74 (106)
T ss_dssp             --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----CCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence            6999999999888775422    15999999885 2233333322221     456899998876531  1236899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .-..-.+   +.....++.+...|+|||++++-+
T Consensus        75 iDg~H~~---~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   75 IDGDHSY---EAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             EES---H---HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             ECCCCCH---HHHHHHHHHHHHHcCCCeEEEEeC
Confidence            8553111   246678899999999999988753

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=96.88  E-value=0.0039  Score=58.05  Aligned_cols=83  Identities=17%  Similarity=0.153  Sum_probs=46.7

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCC-CCCCcCCCcceeEEEcCCC----C-CCCCCCc
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQ----D-FTPETGR  230 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~-~~~~~~~~~~i~~~~~d~~----~-~~~~~~~  230 (348)
                      ..++||||+|..-+--.|..+.+. .++|+|+++..++.|++++... ++     ..+|.+....-.    . +..+...
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----~~~I~l~~~~~~~~i~~~i~~~~e~  177 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----ESRIELRKQKNPDNIFDGIIQPNER  177 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----ccceEEEEcCCccccchhhhcccce
Confidence            568999999987654334433233 6999999999999999998764 33     456777655221    1 1123368


Q ss_pred             eeEEeechhhhcCCh
Q 018970          231 YDVIWVQWCIGHLTD  245 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~  245 (348)
                      ||+.+|+..|+.-.+
T Consensus       178 ~dftmCNPPFy~s~~  192 (299)
T PF05971_consen  178 FDFTMCNPPFYSSQE  192 (299)
T ss_dssp             EEEEEE-----SS--
T ss_pred             eeEEecCCccccChh
Confidence            999999999997653

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=96.83  E-value=0.0024  Score=59.45  Aligned_cols=109  Identities=19%  Similarity=0.143  Sum_probs=79.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCc
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR  230 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~  230 (348)
                      +.++.+|||+.++.|.=+..+++...  ..+++.|+++.-+...++++.+.|.      .++.....|.....  .....
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~~~~~~  156 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPKKPESK  156 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHHHHTTT
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeeccccccccccccc
Confidence            57788999999999999999988765  3899999999999999988877654      35666656655442  12235


Q ss_pred             eeEEee------chhhhcCCh-------hh-------HHHHHHHHHHcC----CCCcEEEEEe
Q 018970          231 YDVIWV------QWCIGHLTD-------DD-------FVSFFKRAKVGL----KPGGFFVLKE  269 (348)
Q Consensus       231 fD~Ii~------~~~l~~~~~-------~d-------~~~~l~~~~~~L----kpgG~lii~~  269 (348)
                      ||.|+.      ..++..-++       ++       ...+|+.+.+.+    ||||.++.+.
T Consensus       157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT  219 (283)
T PF01189_consen  157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST  219 (283)
T ss_dssp             EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred             cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence            999984      222332221       11       246899999999    9999999875

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.75  E-value=0.0065  Score=55.05  Aligned_cols=110  Identities=15%  Similarity=0.085  Sum_probs=68.3

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCCc-ee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGR-YD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~-fD  232 (348)
                      ...+|||+|+|+|..+...+.....+|...|... .++..+.+....+......+..+.....++.+..   .-... +|
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            3567999999999888876655555688888644 3333333322111111111234555555554432   11123 99


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|+++.++.+-.  .+..++.-+...|-.+|.+++..
T Consensus       165 lilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~  199 (248)
T KOG2793|consen  165 LILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAY  199 (248)
T ss_pred             EEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEE
Confidence            999999988765  66778888888888888655554

>PHA01634 hypothetical protein

Probab=96.71  E-value=0.0065  Score=48.91  Aligned_cols=46  Identities=17%  Similarity=0.014  Sum_probs=41.9

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~  202 (348)
                      .+.+|+|||++.|..+++++.++...|.++++++...+..+++.+.
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence            3468999999999999999999999999999999999999987654

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.70  E-value=0.0051  Score=53.51  Aligned_cols=111  Identities=13%  Similarity=0.139  Sum_probs=68.8

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCc-CCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAP-DMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +...+.|||||-|.++..|+..+++ -+.|.++--..-+..++++...+.... ....|+.+...+...+-+  +-|.--
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp--n~f~kg  137 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP--NFFEKG  137 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc--chhhhc
Confidence            4457999999999999999988887 789999988888888887653321111 113455565555444321  111111


Q ss_pred             eechhhhcCChhh-----------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          235 WVQWCIGHLTDDD-----------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       235 i~~~~l~~~~~~d-----------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ..+-.+..++|..           -..++.+..-+|++||.++...
T Consensus       138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            1112222222211           1246788888999999998865

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.69  E-value=0.0047  Score=57.82  Aligned_cols=75  Identities=17%  Similarity=0.171  Sum_probs=58.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET  228 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~  228 (348)
                      +.++..++|+-||.|..+..++.... ..|+++|.++.+++.+++.+...       ..++.++..++.++.     ...
T Consensus        18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-------~~R~~~i~~nF~~l~~~l~~~~~   90 (305)
T TIGR00006        18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-------EGRVVLIHDNFANFFEHLDELLV   90 (305)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-------CCcEEEEeCCHHHHHHHHHhcCC
Confidence            56778999999999999999997743 47999999999999999887542       346888888777653     122


Q ss_pred             CceeEEee
Q 018970          229 GRYDVIWV  236 (348)
Q Consensus       229 ~~fD~Ii~  236 (348)
                      .++|.|++
T Consensus        91 ~~vDgIl~   98 (305)
T TIGR00006        91 TKIDGILV   98 (305)
T ss_pred             CcccEEEE
Confidence            46888874

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.062  Score=48.36  Aligned_cols=106  Identities=21%  Similarity=0.316  Sum_probs=75.0

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-----cEEEEcCCHHHHHHHHHH-hCCCCCCCcCCCcceeEEEcCCCC----CC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARES-LAPENHMAPDMHKATNFFCVPLQD----FT  225 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-----~v~~vD~S~~~l~~a~~~-~~~~~~~~~~~~~~i~~~~~d~~~----~~  225 (348)
                      ..+.+.+|+|+|+..-++.|+.....     .+..+|+|...++..-+. ..+..      ...+.-.++|.+.    ++
T Consensus        77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~------~l~v~~l~~~~~~~La~~~  150 (321)
T COG4301          77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP------GLEVNALCGDYELALAELP  150 (321)
T ss_pred             hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC------CCeEeehhhhHHHHHhccc
Confidence            44679999999999888877765332     799999999999664443 33210      1234445555543    22


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                       ..++==.++...++..+++++...|+.++...|.||-++++.
T Consensus       151 -~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         151 -RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             -CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence             223334555678899999988999999999999999999884

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.44  E-value=0.0059  Score=50.40  Aligned_cols=81  Identities=16%  Similarity=0.192  Sum_probs=56.9

Q ss_pred             cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeEEeechhhhcCChh---------hHHH
Q 018970          182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDD---------DFVS  250 (348)
Q Consensus       182 ~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~Ii~~~~l~~~~~~---------d~~~  250 (348)
                      +|+++|+-+.+++..++++.+.++     ..+++++..+=+++.  .+.+++|+++.+..  ++|-.         ....
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~   73 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGL-----EDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLK   73 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCC-----CCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHH
Confidence            489999999999999999987654     346888877555443  12258999997643  44432         2567


Q ss_pred             HHHHHHHcCCCCcEEEEEe
Q 018970          251 FFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       251 ~l~~~~~~LkpgG~lii~~  269 (348)
                      +++.+.++|+|||.+.+.-
T Consensus        74 Al~~al~lL~~gG~i~iv~   92 (140)
T PF06962_consen   74 ALEAALELLKPGGIITIVV   92 (140)
T ss_dssp             HHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHhhccCCEEEEEE
Confidence            8999999999999999875

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=96.36  E-value=0.0017  Score=50.99  Aligned_cols=80  Identities=24%  Similarity=0.387  Sum_probs=42.3

Q ss_pred             ceeEEeechhhh--cCC--hhhHHHHHHHHHHcCCCCcEEEEEecccC----C---CceecCCCCceecCHHHHHHHHHh
Q 018970          230 RYDVIWVQWCIG--HLT--DDDFVSFFKRAKVGLKPGGFFVLKENIAR----S---GFVLDKEDRSITRSDFYFKELFSR  298 (348)
Q Consensus       230 ~fD~Ii~~~~l~--~~~--~~d~~~~l~~~~~~LkpgG~lii~~~~~~----~---~~~~d~~~~~~~~s~~~l~~l~~~  298 (348)
                      .||+|+|-.+..  |+.  |+-+..+++++++.|+|||.|++-.....    .   ..........+.+.++.+.+.+.+
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~   80 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE   80 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence            489999855443  333  45588999999999999999999541110    0   000000111122344567887777


Q ss_pred             --cCCeEEEEeec
Q 018970          299 --CGLHIYKSKDQ  309 (348)
Q Consensus       299 --aGf~~v~~~~~  309 (348)
                        .||..++....
T Consensus        81 ~evGF~~~e~~~~   93 (110)
T PF06859_consen   81 PEVGFSSVEELGV   93 (110)
T ss_dssp             TTT---EEEEE--
T ss_pred             cccceEEEEEccc
Confidence              69998874443

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.18  E-value=0.12  Score=46.41  Aligned_cols=131  Identities=16%  Similarity=0.112  Sum_probs=73.3

Q ss_pred             CCCcEEEEeccccHHHHHHH-HhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCCC-CCceeE
Q 018970          157 QHLVALDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPE-TGRYDV  233 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la-~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~-~~~fD~  233 (348)
                      .+.+||-+|=..-. +..++ ...+.+|+.+|+++.+++..++.+.+.|+       .++.+..|+.+ +|.. .++||+
T Consensus        44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~i~~~~~DlR~~LP~~~~~~fD~  115 (243)
T PF01861_consen   44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-------PIEAVHYDLRDPLPEELRGKFDV  115 (243)
T ss_dssp             TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE---TTS---TTTSS-BSE
T ss_pred             cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-------ceEEEEecccccCCHHHhcCCCE
Confidence            46789999966543 23333 24455899999999999999988876543       48888889876 3322 389999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCc-EEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG-~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      +++...-.   .+-+.-|+.+....||.-| ..+++-....         .+. ..--.+++.+.+.||.+.+...
T Consensus       116 f~TDPPyT---~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~---------~s~-~~~~~~Q~~l~~~gl~i~dii~  178 (243)
T PF01861_consen  116 FFTDPPYT---PEGLKLFLSRGIEALKGEGCAGYFGFTHKE---------ASP-DKWLEVQRFLLEMGLVITDIIP  178 (243)
T ss_dssp             EEE---SS---HHHHHHHHHHHHHTB-STT-EEEEEE-TTT-----------H-HHHHHHHHHHHTS--EEEEEEE
T ss_pred             EEeCCCCC---HHHHHHHHHHHHHHhCCCCceEEEEEecCc---------CcH-HHHHHHHHHHHHCCcCHHHHHh
Confidence            99865422   1357789999999998866 4444322111         000 0012467888899999888554

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PRK10742 putative methyltransferase; Provisional

Probab=96.11  E-value=0.01  Score=53.65  Aligned_cols=87  Identities=16%  Similarity=0.085  Sum_probs=63.8

Q ss_pred             CCCCC--cEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCC---CcCCCcceeEEEcCCCCCCC-CC
Q 018970          155 NNQHL--VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM---APDMHKATNFFCVPLQDFTP-ET  228 (348)
Q Consensus       155 ~~~~~--~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~---~~~~~~~i~~~~~d~~~~~~-~~  228 (348)
                      ++++.  +|||+=+|.|..+..++..+.. |+++|-++.+....++.+......   ...+..++++...|..++-. ..
T Consensus        84 lk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~  162 (250)
T PRK10742         84 IKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT  162 (250)
T ss_pred             CCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence            34544  8999999999999999989887 999999999998888776542100   00012467888887766431 22


Q ss_pred             CceeEEeechhhhc
Q 018970          229 GRYDVIWVQWCIGH  242 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~  242 (348)
                      .+||+|++-.++.|
T Consensus       163 ~~fDVVYlDPMfp~  176 (250)
T PRK10742        163 PRPQVVYLDPMFPH  176 (250)
T ss_pred             CCCcEEEECCCCCC
Confidence            47999999888777

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=96.08  E-value=0.023  Score=51.90  Aligned_cols=83  Identities=13%  Similarity=0.204  Sum_probs=49.9

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC---------cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN---------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE  227 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~---------~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  227 (348)
                      .+.+|+|+|+|+|.++..++.....         +++.+|+|+.+.+.-++.+............++.+ ..++.+.+  
T Consensus        18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--   94 (252)
T PF02636_consen   18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--   94 (252)
T ss_dssp             S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS---
T ss_pred             cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc--
Confidence            3579999999999999998865221         79999999999999988886521000011223444 22333332  


Q ss_pred             CCceeEEeechhhhcCC
Q 018970          228 TGRYDVIWVQWCIGHLT  244 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~  244 (348)
                        ..-+|+++.+|..++
T Consensus        95 --~~~~iiaNE~~DAlP  109 (252)
T PF02636_consen   95 --FPGFIIANELFDALP  109 (252)
T ss_dssp             --CCEEEEEESSGGGS-
T ss_pred             --CCEEEEEeeehhcCc
Confidence              235666666666665

; PDB: 4F3N_A 1ZKD_B.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.07  E-value=0.011  Score=54.42  Aligned_cols=113  Identities=15%  Similarity=0.111  Sum_probs=78.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~f  231 (348)
                      ...+.+||-||.|.|.+.+....+ -+.+++.+|++...++..++.++.....  -.++++..+-+|-..+-  ...++|
T Consensus       119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g--y~~~~v~l~iGDG~~fl~~~~~~~~  196 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG--YEGKKVKLLIGDGFLFLEDLKENPF  196 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc--cCCCceEEEeccHHHHHHHhccCCc
Confidence            456779999999999999887754 2338999999999999998877643111  11356777777654432  224789


Q ss_pred             eEEeec--hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          232 DVIWVQ--WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       232 D~Ii~~--~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |+|+.-  ....-....-...++..+.+.||+||++++..
T Consensus       197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            999952  22221111224678899999999999999865

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.92  E-value=0.028  Score=54.37  Aligned_cols=101  Identities=16%  Similarity=0.133  Sum_probs=66.1

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEee
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV  236 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii~  236 (348)
                      ...|||||+|||.++.-.+..+.+.|++++.-..|.+.|++...+.|.     ..+|+++.---++.... ..+.|+++.
T Consensus        67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----SdkI~vInkrStev~vg~~~RadI~v~  141 (636)
T KOG1501|consen   67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----SDKINVINKRSTEVKVGGSSRADIAVR  141 (636)
T ss_pred             eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----ccceeeeccccceeeecCcchhhhhhH
Confidence            357999999999999977777888999999999999999998877655     45666665443333321 134666665


Q ss_pred             chhhhcCChhhHHHHHHHHHHcC-CCCc
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGL-KPGG  263 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~L-kpgG  263 (348)
                      -....-+.-+-...-++++++.| +||.
T Consensus       142 e~fdtEligeGalps~qhAh~~L~~~nc  169 (636)
T KOG1501|consen  142 EDFDTELIGEGALPSLQHAHDMLLVDNC  169 (636)
T ss_pred             hhhhhhhhccccchhHHHHHHHhcccCC
Confidence            43333332222233455555544 5553

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=95.91  E-value=0.051  Score=46.84  Aligned_cols=99  Identities=20%  Similarity=0.125  Sum_probs=59.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCCCC------
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFT------  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~------  225 (348)
                      +.++.+|||+||.+|.++.-..++- +. .|.|+|+-.-                 .....++++++ |+.+-.      
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------------~p~~Ga~~i~~~dvtdp~~~~ki~  129 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------------EPPEGATIIQGNDVTDPETYRKIF  129 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------------cCCCCcccccccccCCHHHHHHHH
Confidence            5678999999999999988555443 33 6888886221                 01223444444 555421      


Q ss_pred             --CCCCceeEEeechhhhc--CChhhHH-------HHHHHHHHcCCCCcEEEEEec
Q 018970          226 --PETGRYDVIWVQWCIGH--LTDDDFV-------SFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       226 --~~~~~fD~Ii~~~~l~~--~~~~d~~-------~~l~~~~~~LkpgG~lii~~~  270 (348)
                        .+....|+|++-+.-..  +...|-.       .++.-....++|+|.+++...
T Consensus       130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w  185 (232)
T KOG4589|consen  130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW  185 (232)
T ss_pred             HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence              24467899997543221  1111212       234444567889999999763

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=95.83  E-value=0.055  Score=51.59  Aligned_cols=114  Identities=18%  Similarity=0.082  Sum_probs=56.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-----------C---C---cEEEEcCCHHHHHHHHHHhCCC--CCCCcCCCccee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-----------F---N---EVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATN  215 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-----------~---~---~v~~vD~S~~~l~~a~~~~~~~--~~~~~~~~~~i~  215 (348)
                      .....+|+|+||..|..+..+....           .   .   .|...|.-.+=-...=+.+...  .+. ......+.
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~-~~~~~f~~   92 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK-KFRNYFVS   92 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH-HTTSEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC-CCceEEEE
Confidence            3556799999999999887766431           1   0   5666674322111111100000  000 00011122


Q ss_pred             EEEcCCCCCCCCCCceeEEeechhhhcCCh-------------------------------------hhHHHHHHHHHHc
Q 018970          216 FFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------------DDFVSFFKRAKVG  258 (348)
Q Consensus       216 ~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~-------------------------------------~d~~~~l~~~~~~  258 (348)
                      -..+.+-+--++.++.|++++..++|++..                                     .|+..+|+.=++=
T Consensus        93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E  172 (334)
T PF03492_consen   93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE  172 (334)
T ss_dssp             EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            223344443356789999999999998741                                     1234455555667


Q ss_pred             CCCCcEEEEEe
Q 018970          259 LKPGGFFVLKE  269 (348)
Q Consensus       259 LkpgG~lii~~  269 (348)
                      |+|||.+++.-
T Consensus       173 Lv~GG~mvl~~  183 (334)
T PF03492_consen  173 LVPGGRMVLTF  183 (334)
T ss_dssp             EEEEEEEEEEE
T ss_pred             eccCcEEEEEE
Confidence            89999999964

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=95.66  E-value=0.055  Score=52.18  Aligned_cols=108  Identities=16%  Similarity=0.078  Sum_probs=76.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~  229 (348)
                      +.++-+|||..|.+|.=+.+++.-..+  .|.+.|.+..-+...+.++...|.      .+......|...++   ++ +
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~~~-~  311 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKEFP-G  311 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccccC-c
Confidence            688899999999999988877765333  799999999999999998877654      34444555666654   33 4


Q ss_pred             ceeEEee----ch--hhhc------CCh-h-------hHHHHHHHHHHcCCCCcEEEEEe
Q 018970          230 RYDVIWV----QW--CIGH------LTD-D-------DFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       230 ~fD~Ii~----~~--~l~~------~~~-~-------d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +||-|..    +.  ++.-      ... .       -..++|..+.+++++||+|+.++
T Consensus       312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            8998873    22  1110      000 0       12467888899999999999875

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=95.64  E-value=0.18  Score=48.81  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=33.8

Q ss_pred             CCCCceeEEeechhhhcCCh--h----------------------------------hHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 PETGRYDVIWVQWCIGHLTD--D----------------------------------DFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~--~----------------------------------d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ++.++.+++++.+++|++..  +                                  |+..||+.=++-|.|||.+++.-
T Consensus       158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~  237 (386)
T PLN02668        158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC  237 (386)
T ss_pred             cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence            55689999999999998862  1                                  24456666677799999999974

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.59  E-value=0.041  Score=54.42  Aligned_cols=114  Identities=17%  Similarity=0.223  Sum_probs=78.3

Q ss_pred             HhhhcCCccCCCCCcEEEEeccccHHHHHHHHh---CCC--cEEEEcCCHHHHHHHHHH-hCCCCCCCcCCCcceeEEEc
Q 018970          146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIR---YFN--EVDLLEPVSHFLDAARES-LAPENHMAPDMHKATNFFCV  219 (348)
Q Consensus       146 l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~--~v~~vD~S~~~l~~a~~~-~~~~~~~~~~~~~~i~~~~~  219 (348)
                      +.++.++...+....|+-+|+|.|-+....++.   ...  .+++++-+|.++-..+.. +..+       ..+++++..
T Consensus       356 L~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-------~~~Vtii~~  428 (649)
T KOG0822|consen  356 LLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-------DNRVTIISS  428 (649)
T ss_pred             HHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-------cCeeEEEec
Confidence            333433322333567899999999887666542   111  689999999999887653 2222       568999999


Q ss_pred             CCCCCCCCCCceeEEeechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEE
Q 018970          220 PLQDFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       220 d~~~~~~~~~~fD~Ii~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      |+.+|..+....|++++- -|.-+.| +=-...|.-+-..|||+|+.|=
T Consensus       429 DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  429 DMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP  476 (649)
T ss_pred             cccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence            999999655789998862 2333332 2234678889999999988764

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.55  E-value=0.062  Score=51.00  Aligned_cols=99  Identities=16%  Similarity=0.077  Sum_probs=68.6

Q ss_pred             CccCCCCCcEEEEecc-ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCCCCCCCC
Q 018970          152 NARNNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETG  229 (348)
Q Consensus       152 ~~~~~~~~~VLDvGcG-~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~  229 (348)
                      ....+++.+|+-+|+| -|.++.+++.....+|+++|.|++-++.|++.-.+.            +... |.+....-.+
T Consensus       161 ~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~------------~i~~~~~~~~~~~~~  228 (339)
T COG1064         161 KANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH------------VINSSDSDALEAVKE  228 (339)
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE------------EEEcCCchhhHHhHh
Confidence            3557889999999988 356788888754467999999999999998874431            2221 2222221113


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      .||+|+..-. .        ..+....+.|++||.+++.-..
T Consensus       229 ~~d~ii~tv~-~--------~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         229 IADAIIDTVG-P--------ATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             hCcEEEECCC-h--------hhHHHHHHHHhcCCEEEEECCC
Confidence            4999997655 3        3456677889999999997655

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=95.23  E-value=0.65  Score=42.66  Aligned_cols=143  Identities=12%  Similarity=0.045  Sum_probs=89.2

Q ss_pred             CcEEEEeccccHHHHHHHHhCCCcEEEEcCC-HHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CC-------CCCC
Q 018970          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-------PETG  229 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S-~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-------~~~~  229 (348)
                      ..|+.+|||-=.-...+.  ....+..+|++ |++++.-++.+.+.+.   ....+..++.+|+.+ +.       +..+
T Consensus        83 ~qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~P~v~~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~  157 (260)
T TIGR00027        83 RQVVILGAGLDTRAYRLP--WPDGTRVFEVDQPAVLAFKEKVLAELGA---EPPAHRRAVPVDLRQDWPAALAAAGFDPT  157 (260)
T ss_pred             cEEEEeCCccccHHHhcC--CCCCCeEEECCChHHHHHHHHHHHHcCC---CCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence            469999998754444442  22235555544 4455555555554221   113467777778752 21       1123


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc------------e--ecCCCCceecCHHHHHHH
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF------------V--LDKEDRSITRSDFYFKEL  295 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~------------~--~d~~~~~~~~s~~~l~~l  295 (348)
                      .--++++-+++.+++.++...+++.+.+...||+.+++.......+.            .  .......+.++.+++.++
T Consensus       158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (260)
T TIGR00027       158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEW  237 (260)
T ss_pred             CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHH
Confidence            34588889999999999999999999999889998888532211100            0  111222233578899999


Q ss_pred             HHhcCCeEEEE
Q 018970          296 FSRCGLHIYKS  306 (348)
Q Consensus       296 ~~~aGf~~v~~  306 (348)
                      |.+.||.+...
T Consensus       238 l~~~Gw~~~~~  248 (260)
T TIGR00027       238 LAERGWRASEH  248 (260)
T ss_pred             HHHCCCeeecC
Confidence            99999998764

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.16  E-value=0.11  Score=43.17  Aligned_cols=115  Identities=17%  Similarity=0.096  Sum_probs=72.6

Q ss_pred             hhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCccee
Q 018970          136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN  215 (348)
Q Consensus       136 ~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~  215 (348)
                      ....+.++.++.- +.   .++..+.+|+|+|.|++....+..+....+|++.++-.+..++-..-..|.     .+...
T Consensus        55 pAtteQv~nVLSl-l~---~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~-----~k~tr  125 (199)
T KOG4058|consen   55 PATTEQVENVLSL-LR---GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC-----AKSTR  125 (199)
T ss_pred             CccHHHHHHHHHH-cc---CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc-----ccchh
Confidence            3344555555532 22   356689999999999999988877745689999999999888765544443     45677


Q ss_pred             EEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970          216 FFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV  266 (348)
Q Consensus       216 ~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li  266 (348)
                      |..-|+-.+...+  |..|++..+-..++  |++   .++..-|..|-.++
T Consensus       126 f~RkdlwK~dl~d--y~~vviFgaes~m~--dLe---~KL~~E~p~nt~vv  169 (199)
T KOG4058|consen  126 FRRKDLWKVDLRD--YRNVVIFGAESVMP--DLE---DKLRTELPANTRVV  169 (199)
T ss_pred             hhhhhhhhccccc--cceEEEeehHHHHh--hhH---HHHHhhCcCCCeEE
Confidence            7777877666543  44444444434444  322   33443444444443

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=95.16  E-value=0.074  Score=49.30  Aligned_cols=74  Identities=14%  Similarity=0.152  Sum_probs=58.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~  227 (348)
                      +.++...+|+--|.|..+..+++++..  .++++|.++.+++.|++.+...       ..++.+...++.++.     ..
T Consensus        21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------~~r~~~v~~~F~~l~~~l~~~~   93 (314)
T COG0275          21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------DGRVTLVHGNFANLAEALKELG   93 (314)
T ss_pred             cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------CCcEEEEeCcHHHHHHHHHhcC
Confidence            677789999999999999999999864  6999999999999999988653       356778877766543     11


Q ss_pred             CCceeEEe
Q 018970          228 TGRYDVIW  235 (348)
Q Consensus       228 ~~~fD~Ii  235 (348)
                      .+.+|-|+
T Consensus        94 i~~vDGiL  101 (314)
T COG0275          94 IGKVDGIL  101 (314)
T ss_pred             CCceeEEE
Confidence            24667666

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.01  E-value=0.061  Score=42.13  Aligned_cols=45  Identities=20%  Similarity=0.176  Sum_probs=31.0

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcC
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP  188 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~  188 (348)
                      .+|..+-.....   ..+....+|||||+|.+..-|...++. =.|+|.
T Consensus        44 AyLi~LW~~~~~---~~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~   88 (112)
T PF07757_consen   44 AYLIELWRDMYG---EQKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDA   88 (112)
T ss_pred             HHHHHHHhcccC---CCCCCceEEccCCchHHHHHHHhCCCC-cccccc
Confidence            444444443322   245668999999999999888888876 466763

; GO: 0008168 methyltransferase activity

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.87  E-value=0.21  Score=50.19  Aligned_cols=100  Identities=13%  Similarity=0.117  Sum_probs=65.4

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC----------
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----------  223 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~----------  223 (348)
                      ..++.+||-+|||. |..+...+......|+++|.+++-++.+++. ..            ++...+..+          
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl-GA------------~~v~i~~~e~~~~~~gya~  228 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM-GA------------EFLELDFEEEGGSGDGYAK  228 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC------------eEEEeccccccccccchhh
Confidence            45789999999997 6667766665444799999999999998873 21            111111110          


Q ss_pred             -C------------CCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          224 -F------------TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       224 -~------------~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                       +            ....+.+|+||..-....-+  .+..+.+++.+.+||||.++...
T Consensus       229 ~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~--aP~lit~~~v~~mkpGgvIVdvg  285 (509)
T PRK09424        229 VMSEEFIKAEMALFAEQAKEVDIIITTALIPGKP--APKLITAEMVASMKPGSVIVDLA  285 (509)
T ss_pred             hcchhHHHHHHHHHHhccCCCCEEEECCCCCccc--CcchHHHHHHHhcCCCCEEEEEc
Confidence             0            00013589999765543221  23334599999999999988754

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=94.85  E-value=0.039  Score=53.48  Aligned_cols=102  Identities=14%  Similarity=0.151  Sum_probs=72.6

Q ss_pred             CCCcEEEEeccccHHHHHHHHh--CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCc-ceeEEEcCCCCCC-CCCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFT-PETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~--~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~-~~~~~fD  232 (348)
                      .+.+|||.=+|+|.=+..++..  +...|++.|+|+++++..++++.-.++     .. .+.+...|+..+- .....||
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~-----~~~~~~v~~~DAn~ll~~~~~~fD  123 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL-----EDERIEVSNMDANVLLYSRQERFD  123 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT------SGCCEEEEES-HHHHHCHSTT-EE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc-----cCceEEEehhhHHHHhhhccccCC
Confidence            4568999999999887777766  345899999999999999999765444     22 4778887877643 1347899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|=.    .-+.  .+..||..+.+.++.||+|.++.
T Consensus       124 ~IDl----DPfG--Sp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  124 VIDL----DPFG--SPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             EEEE------SS----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEe----CCCC--CccHhHHHHHHHhhcCCEEEEec
Confidence            9864    2222  56789999999999999999974

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=94.85  E-value=0.014  Score=53.56  Aligned_cols=112  Identities=17%  Similarity=0.156  Sum_probs=66.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHH-hCCCCCC---CcCCCcceeEEEcCCCCCCC-CCC-
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES-LAPENHM---APDMHKATNFFCVPLQDFTP-ETG-  229 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~-~~~~~~~---~~~~~~~i~~~~~d~~~~~~-~~~-  229 (348)
                      ..+.+|||+|||.|...+.....+...++..|.|...++...-. +.-....   ..+...-......++.++.. ..+ 
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~  194 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER  194 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence            45679999999999988887767755688889888877422110 0000000   00001111222221112221 113 


Q ss_pred             -ceeEEeechhhhcCChhhHHHH-HHHHHHcCCCCcEEEEEe
Q 018970          230 -RYDVIWVQWCIGHLTDDDFVSF-FKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       230 -~fD~Ii~~~~l~~~~~~d~~~~-l~~~~~~LkpgG~lii~~  269 (348)
                       .||+|.++.++....  ....+ ......+++++|.+++..
T Consensus       195 ~~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~aA  234 (282)
T KOG2920|consen  195 THYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYVAA  234 (282)
T ss_pred             cchhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhhhh
Confidence             799999999988766  44444 566677788999888753

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=94.84  E-value=0.068  Score=50.77  Aligned_cols=48  Identities=19%  Similarity=0.340  Sum_probs=39.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC---------CCcEEEEcCCHHHHHHHHHHhCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAP  202 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~---------~~~v~~vD~S~~~l~~a~~~~~~  202 (348)
                      .+.+..++|+|+|+|.++..++...         ...+..+|+|+.....-++.++.
T Consensus        75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~  131 (370)
T COG1565          75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA  131 (370)
T ss_pred             CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence            4556789999999999998887642         22899999999999888888765

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.82  E-value=0.12  Score=46.04  Aligned_cols=82  Identities=18%  Similarity=0.180  Sum_probs=52.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHh--CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-----CCCCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-----FTPET  228 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~--~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-----~~~~~  228 (348)
                      ++..++||||.|---+--.+--+  +. ..+|.|+++..++.|+..+...    ..+...+......-.+     .....
T Consensus        77 ~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N----~~l~~~I~lr~qk~~~~if~giig~n  151 (292)
T COG3129          77 GKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISAN----PGLERAIRLRRQKDSDAIFNGIIGKN  151 (292)
T ss_pred             cCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcC----cchhhheeEEeccCcccccccccccc
Confidence            46778999999865432222212  33 5999999999999999887653    1113334444332111     11224


Q ss_pred             CceeEEeechhhhc
Q 018970          229 GRYDVIWVQWCIGH  242 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~  242 (348)
                      +.||++.|+..||.
T Consensus       152 E~yd~tlCNPPFh~  165 (292)
T COG3129         152 ERYDATLCNPPFHD  165 (292)
T ss_pred             ceeeeEecCCCcch
Confidence            68999999999995

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=94.82  E-value=0.42  Score=40.80  Aligned_cols=129  Identities=18%  Similarity=0.170  Sum_probs=74.9

Q ss_pred             EEeccccHHHHHHHHhCC-C-cEEE--EcCCHHHHHHHH---HHhCCCCCCCcCCCcceeEEEcCCCCCCC----CCCce
Q 018970          163 DCGSGIGRITKNLLIRYF-N-EVDL--LEPVSHFLDAAR---ESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRY  231 (348)
Q Consensus       163 DvGcG~G~~~~~la~~~~-~-~v~~--vD~S~~~l~~a~---~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~f  231 (348)
                      =||=|.=.++..|+.... . .+++  .|......+.-.   +++....-     ....-.+..|+.++..    ..+.|
T Consensus         2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-----~g~~V~~~VDat~l~~~~~~~~~~F   76 (166)
T PF10354_consen    2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-----LGVTVLHGVDATKLHKHFRLKNQRF   76 (166)
T ss_pred             eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-----cCCccccCCCCCcccccccccCCcC
Confidence            366677777788877644 2 4444  443333322211   22211100     1112334557766552    34789


Q ss_pred             eEEeechhhhcCC----h-------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcC
Q 018970          232 DVIWVQWCIGHLT----D-------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCG  300 (348)
Q Consensus       232 D~Ii~~~~l~~~~----~-------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aG  300 (348)
                      |.|+.+....--.    .       .=+..|++.+..+|+++|.+.|+-...+.            ++.=.+.++.+++|
T Consensus        77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p------------y~~W~i~~lA~~~g  144 (166)
T PF10354_consen   77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP------------YDSWNIEELAAEAG  144 (166)
T ss_pred             CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC------------CccccHHHHHHhcC
Confidence            9999876633200    1       12567999999999999999998643321            12223678899999


Q ss_pred             CeEEEEee
Q 018970          301 LHIYKSKD  308 (348)
Q Consensus       301 f~~v~~~~  308 (348)
                      |.++....
T Consensus       145 l~l~~~~~  152 (166)
T PF10354_consen  145 LVLVRKVP  152 (166)
T ss_pred             CEEEEEec
Confidence            99987653

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=94.77  E-value=0.063  Score=52.44  Aligned_cols=117  Identities=19%  Similarity=0.191  Sum_probs=71.1

Q ss_pred             CCCCcEEEEeccccHH--HHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCce
Q 018970          156 NQHLVALDCGSGIGRI--TKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~--~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~f  231 (348)
                      -.+..+.|+|.|.|.-  +..++.+. ...++.||.|..|+........+....+..+..+..|+..   -++. ....|
T Consensus       199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~---~~pi~~~~~y  275 (491)
T KOG2539|consen  199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQ---RLPIDIKNGY  275 (491)
T ss_pred             cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcc---cCCCCcccce
Confidence            3456788888886643  33333333 3389999999999999988776511111111111122221   1221 23569


Q ss_pred             eEEeechhhhcCChh-hHH-HHHHHHHHcCCCCcEEEEEecccCCC
Q 018970          232 DVIWVQWCIGHLTDD-DFV-SFFKRAKVGLKPGGFFVLKENIARSG  275 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~-d~~-~~l~~~~~~LkpgG~lii~~~~~~~~  275 (348)
                      |+|++.+.++++... ... ..-..+....++||.+++.+.....+
T Consensus       276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g  321 (491)
T KOG2539|consen  276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMG  321 (491)
T ss_pred             eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccc
Confidence            999999999998752 222 23445566778999999988654433

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=94.70  E-value=0.67  Score=41.72  Aligned_cols=143  Identities=15%  Similarity=0.013  Sum_probs=82.3

Q ss_pred             CCccCCCCCcEEEEeccccHHHHHHHHh-CCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---
Q 018970          151 PNARNNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---  225 (348)
Q Consensus       151 ~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---  225 (348)
                      .+..++++.+||-+|+++|+...++.+- ++. -|++++.|+..-...-..+.+        ..|+--+..|+..-.   
T Consensus       150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--------RtNiiPIiEDArhP~KYR  221 (317)
T KOG1596|consen  150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--------RTNIIPIIEDARHPAKYR  221 (317)
T ss_pred             cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--------cCCceeeeccCCCchhee
Confidence            3345789999999999999987777644 333 689999987654444333332        234545555654311   


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec--ccCCCceecCCCCceecCHHHH---HHHHHhcC
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN--IARSGFVLDKEDRSITRSDFYF---KELFSRCG  300 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~--~~~~~~~~d~~~~~~~~s~~~l---~~l~~~aG  300 (348)
                      ..-+-.|+|++--.    +++....+.-++...||+||-++|+-.  +.....          .....+   .+.|++--
T Consensus       222 mlVgmVDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvisikancidstv----------~ae~vFa~Ev~klqee~  287 (317)
T KOG1596|consen  222 MLVGMVDVIFADVA----QPDQARIVALNAQYFLKNGGHFVISIKANCIDSTV----------FAEAVFAAEVKKLQEEQ  287 (317)
T ss_pred             eeeeeEEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEEEecccccccc----------cHHHHHHHHHHHHHHhc
Confidence            11134677765322    112344455678889999999998742  221111          111111   34556656


Q ss_pred             CeEEEEeecCCCCcc
Q 018970          301 LHIYKSKDQKGLPEE  315 (348)
Q Consensus       301 f~~v~~~~~~~~~~~  315 (348)
                      ++..+....++|..+
T Consensus       288 lkP~EqvtLEP~erd  302 (317)
T KOG1596|consen  288 LKPKEQVTLEPFERD  302 (317)
T ss_pred             cCchheeccccccCC
Confidence            776665555555443

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=94.70  E-value=0.17  Score=47.49  Aligned_cols=146  Identities=17%  Similarity=0.135  Sum_probs=90.6

Q ss_pred             cEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCCceeEEee
Q 018970          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVIWV  236 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~Ii~  236 (348)
                      +++|+=||.|.++..+...++..+.++|+++.+.+.-+.++.             .....|+.++.   .+. .+|+++.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------~~~~~Di~~~~~~~l~~-~~D~l~g   67 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------EVICGDITEIDPSDLPK-DVDLLIG   67 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------EEEESHGGGCHHHHHHH-T-SEEEE
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------ccccccccccccccccc-cceEEEe
Confidence            689999999999999988888889999999999999888873             45667777765   222 5999996


Q ss_pred             chhhhcC---------Ch--hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          237 QWCIGHL---------TD--DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       237 ~~~l~~~---------~~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      ......+         .|  ..+-.-+-++...++|  .+++.||+..-.      ..........+.+.|++.||.+..
T Consensus        68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~P--k~~~~ENV~~l~------~~~~~~~~~~i~~~l~~lGY~v~~  139 (335)
T PF00145_consen   68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKP--KYFLLENVPGLL------SSKNGEVFKEILEELEELGYNVQW  139 (335)
T ss_dssp             E---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS---SEEEEEEEGGGG------TGGGHHHHHHHHHHHHHTTEEEEE
T ss_pred             ccCCceEeccccccccccccchhhHHHHHHHhhccc--eEEEecccceee------ccccccccccccccccccceeehh
Confidence            5433322         11  1122223344455678  456667764211      000002345678889999999766


Q ss_pred             Eee---cCCCCccceEEEEEEEeec
Q 018970          306 SKD---QKGLPEELFAVKMYALTAE  327 (348)
Q Consensus       306 ~~~---~~~~~~~l~~v~~~~l~~~  327 (348)
                      ...   ..+.|..--.+.+.+.+.-
T Consensus       140 ~vlna~~yGvPQ~R~R~fivg~r~~  164 (335)
T PF00145_consen  140 RVLNAADYGVPQNRERVFIVGIRKD  164 (335)
T ss_dssp             EEEEGGGGTSSBE-EEEEEEEEEGG
T ss_pred             ccccHhhCCCCCceeeEEEEEECCC
Confidence            443   3467776556666666643

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.66  E-value=0.077  Score=49.62  Aligned_cols=100  Identities=19%  Similarity=0.121  Sum_probs=65.4

Q ss_pred             ccCCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc--CCCCCC---
Q 018970          153 ARNNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQDFT---  225 (348)
Q Consensus       153 ~~~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~--d~~~~~---  225 (348)
                      .+.+.+.+||-+|+|+ |.++...++. +...|..+|.++.-++.|++ +....         +.....  +..++.   
T Consensus       165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~---------~~~~~~~~~~~~~~~~v  234 (354)
T KOG0024|consen  165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATV---------TDPSSHKSSPQELAELV  234 (354)
T ss_pred             cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeE---------EeeccccccHHHHHHHH
Confidence            4578899999999997 5556555544 45589999999999999998 54311         111111  011110   


Q ss_pred             ---CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          226 ---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       226 ---~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                         .....+|+.+-+..++        ..++.....+++||.+++...
T Consensus       235 ~~~~g~~~~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~  274 (354)
T KOG0024|consen  235 EKALGKKQPDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGM  274 (354)
T ss_pred             HhhccccCCCeEEEccCch--------HHHHHHHHHhccCCEEEEecc
Confidence               1123588888665544        455667788999999877653

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=94.53  E-value=0.073  Score=49.92  Aligned_cols=75  Identities=19%  Similarity=0.183  Sum_probs=53.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----C-C
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-E  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-~  227 (348)
                      +.++..++|+--|.|..+..++++... .|+++|.++.+++.|++++...       ..++.+...++.++.     . .
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-------~~r~~~~~~~F~~l~~~l~~~~~   90 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-------DDRFIFIHGNFSNLDEYLKELNG   90 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-------CTTEEEEES-GGGHHHHHHHTTT
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-------cceEEEEeccHHHHHHHHHHccC
Confidence            567789999999999999999987554 8999999999999999887643       456888887776653     2 2


Q ss_pred             CCceeEEee
Q 018970          228 TGRYDVIWV  236 (348)
Q Consensus       228 ~~~fD~Ii~  236 (348)
                      ...+|.|++
T Consensus        91 ~~~~dgiL~   99 (310)
T PF01795_consen   91 INKVDGILF   99 (310)
T ss_dssp             TS-EEEEEE
T ss_pred             CCccCEEEE
Confidence            346777773

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=94.51  E-value=0.35  Score=45.71  Aligned_cols=145  Identities=18%  Similarity=0.171  Sum_probs=88.2

Q ss_pred             EEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEeechh
Q 018970          161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWC  239 (348)
Q Consensus       161 VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii~~~~  239 (348)
                      |+|+=||.|.++..+...++.-+.++|+++..++.-+.++..            .+...|+.++... -..+|+++....
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------------~~~~~Di~~~~~~~~~~~dvl~gg~P   68 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------------KVPFGDITKISPSDIPDFDILLGGFP   68 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------------CCCccChhhhhhhhCCCcCEEEecCC
Confidence            689999999999999878887778899999999998888753            2233565554421 135799986433


Q ss_pred             hhcCC--------hhhHHHHHH---HHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          240 IGHLT--------DDDFVSFFK---RAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       240 l~~~~--------~~d~~~~l~---~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      ...+.        ++....++.   ++.+.++|  .+++.||+..--.   . ..  ......+.+.|+..||.+.....
T Consensus        69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P--~~~v~ENV~~l~~---~-~~--~~~~~~i~~~l~~~GY~v~~~~l  140 (315)
T TIGR00675        69 CQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKP--KFFLLENVKGLVS---H-DK--GRTFKVIIETLEELGYKVYYKVL  140 (315)
T ss_pred             CcccchhcccCCCCCchhhHHHHHHHHHhhcCC--CEEEeeccHHHHh---c-cc--chHHHHHHHHHHhCCCEEEEEEE
Confidence            22221        011112233   33344566  4777787653110   0 00  12235678888999999766443


Q ss_pred             ---cCCCCccceEEEEEEEe
Q 018970          309 ---QKGLPEELFAVKMYALT  325 (348)
Q Consensus       309 ---~~~~~~~l~~v~~~~l~  325 (348)
                         ..+.|..--.+.+.+.+
T Consensus       141 ~a~dyGvPQ~R~R~f~ia~r  160 (315)
T TIGR00675       141 NAKDFGVPQNRERIYIVGFR  160 (315)
T ss_pred             cHHHCCCCCCccEEEEEEEe
Confidence               34567665555555554

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=94.39  E-value=0.042  Score=49.37  Aligned_cols=83  Identities=14%  Similarity=0.190  Sum_probs=47.7

Q ss_pred             CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhC---CCCCCCcCCCcceeEEEcCCCCC-CCCCCceeEE
Q 018970          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA---PENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI  234 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~---~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~I  234 (348)
                      .+|||+-+|-|..+.-++..+. +|+++|-||-+....++-+.   ...........+++++.+|..++ ..++.+||+|
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV  155 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV  155 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence            3899999999999998876666 59999999987666553221   11100011235799999998874 3345799999


Q ss_pred             eechhhhc
Q 018970          235 WVQWCIGH  242 (348)
Q Consensus       235 i~~~~l~~  242 (348)
                      ++-.+|.+
T Consensus       156 Y~DPMFp~  163 (234)
T PF04445_consen  156 YFDPMFPE  163 (234)
T ss_dssp             EE--S---
T ss_pred             EECCCCCC
Confidence            99888776

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=94.12  E-value=0.036  Score=46.60  Aligned_cols=130  Identities=17%  Similarity=0.203  Sum_probs=76.5

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHH-HHHHHhCCCCCCCcCCCcceeEEEcCCC-CCCCCCCceeEEe
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLD-AARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYDVIW  235 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~-~a~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~fD~Ii  235 (348)
                      +.++|-+|+..=.+-...++.+...|.-+|.++--++ ..+.++             ..+...|+. ++..-.++||++.
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-------------ssi~p~df~~~~~~y~~~fD~~a   68 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-------------SSILPVDFAKNWQKYAGSFDFAA   68 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-------------ccccHHHHHHHHHHhhccchhhh
Confidence            3577888888766655555667777888876542111 011111             111111111 1111237899999


Q ss_pred             echhhhcCC----------hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          236 VQWCIGHLT----------DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       236 ~~~~l~~~~----------~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      +..+++|+.          ..| ...+.++.++|||||.|++.-++..+...+..  +. .+....+..+|.  ||+.+.
T Consensus        69 s~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNa--hR-iYg~~rL~mm~~--gfe~i~  142 (177)
T PF03269_consen   69 SFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNA--HR-IYGPIRLAMMFY--GFEWID  142 (177)
T ss_pred             eechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEeecCCcceEEec--ce-eecHhHHHHHhC--CcEEEe
Confidence            999999872          122 45678999999999999999877654332221  11 134445555554  788777


Q ss_pred             E
Q 018970          306 S  306 (348)
Q Consensus       306 ~  306 (348)
                      .
T Consensus       143 t  143 (177)
T PF03269_consen  143 T  143 (177)
T ss_pred             e
Confidence            4

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.06  E-value=0.58  Score=44.51  Aligned_cols=145  Identities=17%  Similarity=0.109  Sum_probs=95.6

Q ss_pred             CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC--C-ceeEEe
Q 018970          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--G-RYDVIW  235 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~-~fD~Ii  235 (348)
                      .+++|+=||.|.+...+...+++-+.++|+++..++.-+.++..           ..+...|+..+....  . .+|+|+
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----------~~~~~~di~~~~~~~~~~~~~Dvli   72 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----------GDIILGDIKELDGEALRKSDVDVLI   72 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----------CceeechHhhcChhhccccCCCEEE
Confidence            57999999999999999888888899999999999988888753           234445555443221  2 789999


Q ss_pred             echhhhcCCh-------hh----HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          236 VQWCIGHLTD-------DD----FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       236 ~~~~l~~~~~-------~d----~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      .......+.-       +|    +.--+.++...++|  .+++.||+..--..       .....+.+.+.|++.||.+.
T Consensus        73 gGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~-------~~~~~~~i~~~L~~~GY~~~  143 (328)
T COG0270          73 GGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS-------KGQTFDEIKKELEELGYGVE  143 (328)
T ss_pred             eCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc-------CchHHHHHHHHHHHcCCcch
Confidence            7554444321       11    22345566667788  77788877531111       22356789999999999733


Q ss_pred             E---EeecCCCCccceEEEEEE
Q 018970          305 K---SKDQKGLPEELFAVKMYA  323 (348)
Q Consensus       305 ~---~~~~~~~~~~l~~v~~~~  323 (348)
                      .   .....+.|..--.+.+..
T Consensus       144 ~~ilna~dyGvPQ~ReRvfiig  165 (328)
T COG0270         144 FNILNAADYGVPQSRERVFIVG  165 (328)
T ss_pred             HheeeHHhcCCCCCccEEEEEE
Confidence            3   233456676644444443

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=93.93  E-value=0.22  Score=48.23  Aligned_cols=105  Identities=19%  Similarity=0.145  Sum_probs=66.8

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC-C----CCCCCC
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L----QDFTPE  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d-~----~~~~~~  227 (348)
                      ..++.+||.+|||. |..+..+++.... .+++++.++.+++.+++....         ..+.+...+ +    .++. .
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~---------~vi~~~~~~~~~~~l~~~~-~  251 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA---------ETINFEEVDDVVEALRELT-G  251 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc---------EEEcCCcchHHHHHHHHHc-C
Confidence            56678999999998 8888888877554 599999999999998875321         011111111 0    1111 1


Q ss_pred             CCceeEEeechhh-----------hcC--ChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          228 TGRYDVIWVQWCI-----------GHL--TDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       228 ~~~fD~Ii~~~~l-----------~~~--~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ...+|+|+-.-.-           .|.  +..+....+..+.+.|+|+|.+++..
T Consensus       252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            2358988764211           111  00123467888999999999998864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.88  E-value=0.3  Score=46.45  Aligned_cols=97  Identities=20%  Similarity=0.137  Sum_probs=60.0

Q ss_pred             CCCCcEEEEeccc-cHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          156 NQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~-G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      .++.+||-.|||. |.++..++... ...|+++|.+++.++.+++. ...        .-++....++.++....+.+|+
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~--------~vi~~~~~~~~~~~~~~g~~D~  238 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GAD--------KLVNPQNDDLDHYKAEKGYFDV  238 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCc--------EEecCCcccHHHHhccCCCCCE
Confidence            4577899999874 66666666553 43689999999999988763 211        0111111122222211245898


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |+-.-.       . ...+..+.++|++||.+++..
T Consensus       239 vid~~G-------~-~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        239 SFEVSG-------H-PSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             EEECCC-------C-HHHHHHHHHHhhcCCEEEEEc
Confidence            875422       1 135677888999999998865

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=93.66  E-value=2.7  Score=42.32  Aligned_cols=109  Identities=14%  Similarity=0.068  Sum_probs=68.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC---C--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY---F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~---~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----  225 (348)
                      +.+..+|.|-.||+|.+........   .  ..++|.|+++.....|+-+.--+|...     .+.....|-..-+    
T Consensus       184 ~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----~~~i~~~dtl~~~~~~~  258 (489)
T COG0286         184 PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----DANIRHGDTLSNPKHDD  258 (489)
T ss_pred             CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----cccccccccccCCcccc
Confidence            3456699999999998876554332   1  358999999999999988765433321     1122222211111    


Q ss_pred             -CCCCceeEEeechhhhc---------------------CC-h-hhHHHHHHHHHHcCCCCcEEEEE
Q 018970          226 -PETGRYDVIWVQWCIGH---------------------LT-D-DDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~---------------------~~-~-~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                       ...+.||.|+++..+.-                     ++ . .....+++.+...|+|||...|.
T Consensus       259 ~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv  325 (489)
T COG0286         259 KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV  325 (489)
T ss_pred             cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence             12367999998766640                     00 0 11267899999999999865554

>PRK10458 DNA cytosine methylase; Provisional

Probab=93.56  E-value=2.7  Score=42.02  Aligned_cols=45  Identities=18%  Similarity=0.035  Sum_probs=38.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHh
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL  200 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~  200 (348)
                      ....+++|+=||.|.+...+-..++..|.++|+++.+.+.-+.++
T Consensus        86 ~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         86 HYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence            335699999999999999987778877899999999888877776

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=93.36  E-value=0.32  Score=45.50  Aligned_cols=116  Identities=14%  Similarity=0.201  Sum_probs=75.9

Q ss_pred             CCCcEEEEeccccHHHHHHHHhC-------C--------------CcEEEEcCCHH--HHHHHHHHhCCCC---------
Q 018970          157 QHLVALDCGSGIGRITKNLLIRY-------F--------------NEVDLLEPVSH--FLDAARESLAPEN---------  204 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~-------~--------------~~v~~vD~S~~--~l~~a~~~~~~~~---------  204 (348)
                      +..+||.||.|-|.=...++...       .              -.|+++|+.+-  .++.....+....         
T Consensus        86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~  165 (315)
T PF11312_consen   86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA  165 (315)
T ss_pred             cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence            34799999999987555555433       0              06889997653  4454444444320         


Q ss_pred             -C-CCcCCCcceeEEEcCCCCCCCCC-------CceeEEeechhhhcCC---hhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          205 -H-MAPDMHKATNFFCVPLQDFTPET-------GRYDVIWVQWCIGHLT---DDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       205 -~-~~~~~~~~i~~~~~d~~~~~~~~-------~~fD~Ii~~~~l~~~~---~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                       + ....-.-++.|.+.|+..+..++       ...|+|...+++.-+=   .....+||.++...++||..|+|.|...
T Consensus       166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG  245 (315)
T PF11312_consen  166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG  245 (315)
T ss_pred             ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence             0 11112347889999998876431       2478888776665331   1356789999999999999999998543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=93.33  E-value=0.51  Score=49.33  Aligned_cols=132  Identities=14%  Similarity=0.140  Sum_probs=76.0

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-------C-----C-cEEEEcCCH---HHHHHHH-----------HHhCCCCCCCc
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-------F-----N-EVDLLEPVS---HFLDAAR-----------ESLAPENHMAP  208 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-------~-----~-~v~~vD~S~---~~l~~a~-----------~~~~~~~~~~~  208 (348)
                      .+.-+|||+|-|+|.......+..       +     . +++.+|..|   +.+..+-           .....+.....
T Consensus        56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  135 (662)
T PRK01747         56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP  135 (662)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence            344789999999999766555322       2     1 688888543   3333322           11111100000


Q ss_pred             C--------CCcceeEEEcCCCCCCC-CCCceeEEeec-hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee
Q 018970          209 D--------MHKATNFFCVPLQDFTP-ETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL  278 (348)
Q Consensus       209 ~--------~~~~i~~~~~d~~~~~~-~~~~fD~Ii~~-~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~  278 (348)
                      .        -....+...+|+.+.-. -...+|+++.- ++-..-++=--..+++.++++++|||.+.-..         
T Consensus       136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t---------  206 (662)
T PRK01747        136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT---------  206 (662)
T ss_pred             CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence            0        01244556667654321 12569999863 22223232113589999999999999986332         


Q ss_pred             cCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          279 DKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       279 d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                               +...+++-|.++||++..
T Consensus       207 ---------~a~~vr~~l~~~GF~v~~  224 (662)
T PRK01747        207 ---------SAGFVRRGLQEAGFTVRK  224 (662)
T ss_pred             ---------hHHHHHHHHHHcCCeeee
Confidence                     334588899999998764

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.21  E-value=0.72  Score=44.26  Aligned_cols=96  Identities=19%  Similarity=0.164  Sum_probs=64.7

Q ss_pred             CCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCC-C-----CCCC
Q 018970          156 NQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-D-----FTPE  227 (348)
Q Consensus       156 ~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~-~-----~~~~  227 (348)
                      .++.+|+-+|||+ |.++..+++. +...|+++|.++.-++.|++.....            ....... +     ....
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~------------~~~~~~~~~~~~~~~~~t  234 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD------------VVVNPSEDDAGAEILELT  234 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe------------EeecCccccHHHHHHHHh
Confidence            3444899999997 7777666655 3458999999999999999865431            1111111 0     0111


Q ss_pred             C-CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          228 T-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       228 ~-~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      . ..+|+++-.-.   .     ...+..+.++++|||.+.+.-..
T Consensus       235 ~g~g~D~vie~~G---~-----~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         235 GGRGADVVIEAVG---S-----PPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CCCCCCEEEECCC---C-----HHHHHHHHHHhcCCCEEEEEecc
Confidence            1 26999986444   1     24788999999999999986544

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=93.16  E-value=0.46  Score=41.92  Aligned_cols=105  Identities=10%  Similarity=0.070  Sum_probs=55.2

Q ss_pred             CCCcEEEEeccccHHHHHHHHh---C-C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----C-
Q 018970          157 QHLVALDCGSGIGRITKNLLIR---Y-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----P-  226 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~---~-~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~-  226 (348)
                      ++..|+|+|.-.|.-+..++..   . . ..|.++|++....+..  .....     ++..++++..+|-.+..    . 
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~h-----p~~~rI~~i~Gds~d~~~~~~v~  104 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESH-----PMSPRITFIQGDSIDPEIVDQVR  104 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG---------TTEEEEES-SSSTHHHHTSG
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhc-----cccCceEEEECCCCCHHHHHHHH
Confidence            3468999999999988777642   2 2 3899999954333221  11111     11367999999876642    0 


Q ss_pred             ---CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          227 ---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       227 ---~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                         ......+|+.- +- |.. ++....|+....++++|+++++.+..
T Consensus       105 ~~~~~~~~vlVilD-s~-H~~-~hvl~eL~~y~plv~~G~Y~IVeDt~  149 (206)
T PF04989_consen  105 ELASPPHPVLVILD-SS-HTH-EHVLAELEAYAPLVSPGSYLIVEDTI  149 (206)
T ss_dssp             SS----SSEEEEES-S------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred             HhhccCCceEEEEC-CC-ccH-HHHHHHHHHhCccCCCCCEEEEEecc
Confidence               11233444432 22 222 25778888899999999999997643

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.11  E-value=0.28  Score=49.28  Aligned_cols=98  Identities=13%  Similarity=0.138  Sum_probs=62.6

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC----------
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----------  223 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~----------  223 (348)
                      ..++.+||-+|||. |..+..++......|+++|.++..++.++. +..            ++...|..+          
T Consensus       161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa------------~~v~v~~~e~g~~~~gYa~  227 (511)
T TIGR00561       161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGA------------EFLELDFKEEGGSGDGYAK  227 (511)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC------------eEEecccccccccccccee
Confidence            34578999999997 566666665544469999999998888876 221            121222110          


Q ss_pred             -------------CCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970          224 -------------FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       224 -------------~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                                   +......+|+|+..-.+..-+  .+.-+.+++.+.+|||+.++-
T Consensus       228 ~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~--aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       228 VMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP--APKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             ecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC--CCeeehHHHHhhCCCCCEEEE
Confidence                         111124689997765444322  333467888999999998774

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK13699 putative methylase; Provisional

Probab=93.09  E-value=0.34  Score=43.58  Aligned_cols=75  Identities=13%  Similarity=0.022  Sum_probs=45.5

Q ss_pred             EEEcCCCCC--CCCCCceeEEeechhhh----c-----CC----hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC
Q 018970          216 FFCVPLQDF--TPETGRYDVIWVQWCIG----H-----LT----DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK  280 (348)
Q Consensus       216 ~~~~d~~~~--~~~~~~fD~Ii~~~~l~----~-----~~----~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~  280 (348)
                      ++.+|..++  ..+++++|+|+......    +     +.    .+-...++.+++|+|||||.+++....         
T Consensus         4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~---------   74 (227)
T PRK13699          4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW---------   74 (227)
T ss_pred             EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc---------
Confidence            344444332  24456778777653321    0     00    022467899999999999988763211         


Q ss_pred             CCCceecCHHHHHHHHHhcCCeEEE
Q 018970          281 EDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       281 ~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                            .....+..+++++||.+..
T Consensus        75 ------~~~~~~~~al~~~GF~l~~   93 (227)
T PRK13699         75 ------NRVDRFMAAWKNAGFSVVG   93 (227)
T ss_pred             ------ccHHHHHHHHHHCCCEEee
Confidence                  1123467788999998776

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=92.04  E-value=0.3  Score=45.54  Aligned_cols=100  Identities=13%  Similarity=0.096  Sum_probs=73.0

Q ss_pred             CCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      -++.+|.-||.|. |..+..++.-....|+.+|.|..-+......+..          +++..-.+..++...-..+|+|
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----------rv~~~~st~~~iee~v~~aDlv  235 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----------RVHTLYSTPSNIEEAVKKADLV  235 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----------eeEEEEcCHHHHHHHhhhccEE
Confidence            3456889999996 7778778766555799999999999888877743          4666665555554333578999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      |..--+---.  .+.-+.+++...||||+.++=
T Consensus       236 IgaVLIpgak--aPkLvt~e~vk~MkpGsVivD  266 (371)
T COG0686         236 IGAVLIPGAK--APKLVTREMVKQMKPGSVIVD  266 (371)
T ss_pred             EEEEEecCCC--CceehhHHHHHhcCCCcEEEE
Confidence            8654443333  567788999999999998774

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=91.69  E-value=0.12  Score=47.82  Aligned_cols=103  Identities=22%  Similarity=0.145  Sum_probs=66.3

Q ss_pred             CCcEEEEeccccHHHH-HHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          158 HLVALDCGSGIGRITK-NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~-~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      +..|+|+=+|.|+++. .+...+...|.++|.+|..++..++++...+.     ..+...+.+|-.. +-+....|-|..
T Consensus       195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V-----~~r~~i~~gd~R~-~~~~~~AdrVnL  268 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV-----MDRCRITEGDNRN-PKPRLRADRVNL  268 (351)
T ss_pred             cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch-----HHHHHhhhccccc-cCccccchheee
Confidence            3689999999999999 66667888999999999999999998765322     1223333334222 222356777764


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCC-Cc-EEEEEeccc
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKP-GG-FFVLKENIA  272 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~Lkp-gG-~lii~~~~~  272 (348)
                      .    -+|.  -++-.-.+.++||| || ++-|-+++.
T Consensus       269 G----LlPS--se~~W~~A~k~Lk~eggsilHIHenV~  300 (351)
T KOG1227|consen  269 G----LLPS--SEQGWPTAIKALKPEGGSILHIHENVK  300 (351)
T ss_pred             c----cccc--cccchHHHHHHhhhcCCcEEEEecccc
Confidence            3    3332  12333345667777 45 666666654

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=91.29  E-value=0.55  Score=41.55  Aligned_cols=128  Identities=15%  Similarity=0.101  Sum_probs=69.9

Q ss_pred             hHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCC---CcEEEEcCCHHHHHHHHHHhCCC---CCCC----
Q 018970          138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPE---NHMA----  207 (348)
Q Consensus       138 ~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~---~~v~~vD~S~~~l~~a~~~~~~~---~~~~----  207 (348)
                      ..+.+++.+..    .....+.++-|-.||.|++.--+.--+.   ..|.+.|+++++++.|++|+.-.   |+..    
T Consensus        36 AsEi~qR~l~~----l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e  111 (246)
T PF11599_consen   36 ASEIFQRALHY----LEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREE  111 (246)
T ss_dssp             HHHHHHHHHCT----SSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHh----hcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence            33455555432    2235667999999999998654432222   28999999999999999865311   0000    


Q ss_pred             -----------------------------cCCCcceeEEEcCCCCCCC-----CCCceeEEeechhhhcCCh-------h
Q 018970          208 -----------------------------PDMHKATNFFCVPLQDFTP-----ETGRYDVIWVQWCIGHLTD-------D  246 (348)
Q Consensus       208 -----------------------------~~~~~~i~~~~~d~~~~~~-----~~~~fD~Ii~~~~l~~~~~-------~  246 (348)
                                                   ........+.+.|+.+...     .....|+|+.--...++++       +
T Consensus       112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~  191 (246)
T PF11599_consen  112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGG  191 (246)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HH
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCC
Confidence                                         0011235677778877321     1234699998666555542       1


Q ss_pred             hHHHHHHHHHHcCCCCcEEEEEe
Q 018970          247 DFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       247 d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      -...+|..++.+|.+++++.+++
T Consensus       192 p~~~ml~~l~~vLp~~sVV~v~~  214 (246)
T PF11599_consen  192 PVAQMLNSLAPVLPERSVVAVSD  214 (246)
T ss_dssp             HHHHHHHHHHCCS-TT-EEEEEE
T ss_pred             cHHHHHHHHHhhCCCCcEEEEec
Confidence            25679999999995566666644

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=90.96  E-value=2.1  Score=39.97  Aligned_cols=94  Identities=22%  Similarity=0.203  Sum_probs=60.9

Q ss_pred             CCCCCcEEEEecc-ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-C-----CCC
Q 018970          155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-----TPE  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG-~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-----~~~  227 (348)
                      +.++.+||..|+| .|..+..++......|++++.++...+.+++. .-            +....+-.. .     ...
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~-g~------------~~~~~~~~~~~~~~~~~~~  229 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL-GA------------DEVLNSLDDSPKDKKAAGL  229 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh-CC------------CEEEcCCCcCHHHHHHHhc
Confidence            5667789998877 47788888776544699999999999888552 11            111111110 0     112


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+.+|+|+.+...        ...++.+.+.|+++|.++...
T Consensus       230 ~~~~D~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         230 GGGFDVIFDFVGT--------QPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             CCCceEEEECCCC--------HHHHHHHHHHhhcCCEEEEEC
Confidence            3568988753221        246778899999999998753

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=90.85  E-value=0.59  Score=44.74  Aligned_cols=43  Identities=21%  Similarity=0.334  Sum_probs=35.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHH
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE  198 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~  198 (348)
                      .+-..|+|+|+|.|+++..+.-.+.-.|.++|-|....+.|++
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            4456899999999999998875555589999999887777765

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=90.75  E-value=1.1  Score=38.87  Aligned_cols=104  Identities=13%  Similarity=0.027  Sum_probs=72.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHh----CC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-----
Q 018970          157 QHLVALDCGSGIGRITKNLLIR----YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----  226 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~----~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----  226 (348)
                      .+..|.|+|.-.|..+..++..    +- -.|.++|++-..++-+....           +.+.|+.++-.+...     
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~-----------p~i~f~egss~dpai~eqi~  137 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV-----------PDILFIEGSSTDPAIAEQIR  137 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC-----------CCeEEEeCCCCCHHHHHHHH
Confidence            4568999999999988877754    21 17999999877765543332           458899887665431     


Q ss_pred             --CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC
Q 018970          227 --ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR  273 (348)
Q Consensus       227 --~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~  273 (348)
                        ..+.--+.++-.+-|++.  ...+.++....+|..|-++++-+...+
T Consensus       138 ~~~~~y~kIfvilDsdHs~~--hvLAel~~~~pllsaG~Y~vVeDs~v~  184 (237)
T COG3510         138 RLKNEYPKIFVILDSDHSME--HVLAELKLLAPLLSAGDYLVVEDSNVN  184 (237)
T ss_pred             HHhcCCCcEEEEecCCchHH--HHHHHHHHhhhHhhcCceEEEeccccc
Confidence              112223444555666655  677888999999999999999875544

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=90.74  E-value=0.67  Score=44.24  Aligned_cols=100  Identities=15%  Similarity=0.154  Sum_probs=72.6

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEe
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW  235 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii  235 (348)
                      +.+|||-=+|+|.=++.++..... .|+.-|+||..++.+++++....      ..+......|...+-.. ...||+|=
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~------~~~~~v~n~DAN~lm~~~~~~fd~ID  126 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS------GEDAEVINKDANALLHELHRAFDVID  126 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC------cccceeecchHHHHHHhcCCCccEEe
Confidence            568999999999888877766544 79999999999999999986531      12333344555544322 36788774


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .    .-+.  .+..|+..+.+.++.||++.++.
T Consensus       127 i----DPFG--SPaPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         127 I----DPFG--SPAPFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             c----CCCC--CCchHHHHHHHHhhcCCEEEEEe
Confidence            2    2222  46789999999999999999964

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.54  E-value=0.45  Score=42.48  Aligned_cols=93  Identities=15%  Similarity=0.169  Sum_probs=61.7

Q ss_pred             CcEEEEeccccHHHHHHHHhCCC----------cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---
Q 018970          159 LVALDCGSGIGRITKNLLIRYFN----------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---  225 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~----------~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---  225 (348)
                      .+++|+.+.+|.++.-|.++.+.          .+++||+-+ |.                .-..+.-+++|++...   
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma----------------PI~GV~qlq~DIT~~stae  105 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA----------------PIEGVIQLQGDITSASTAE  105 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC----------------ccCceEEeecccCCHhHHH
Confidence            48999999999999877766433          278888632 11                0234566677877643   


Q ss_pred             -----CCCCceeEEeechh-----hhcCCh----hhHHHHHHHHHHcCCCCcEEEEE
Q 018970          226 -----PETGRYDVIWVQWC-----IGHLTD----DDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       226 -----~~~~~fD~Ii~~~~-----l~~~~~----~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                           +.....|+|+|-.+     +|.+..    +-+..+|.-...+|||||.|+-.
T Consensus       106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen  106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence                 33357899998543     443331    11456677788899999999863

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=90.30  E-value=1.7  Score=41.59  Aligned_cols=110  Identities=17%  Similarity=0.056  Sum_probs=71.2

Q ss_pred             cCCCCCcEEEEeccccHHHHHHHHhCCC-----cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--
Q 018970          154 RNNQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--  226 (348)
Q Consensus       154 ~~~~~~~VLDvGcG~G~~~~~la~~~~~-----~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--  226 (348)
                      .+.++.+|||..+.+|.=+..+++....     .|.+-|.+..-+...........      ..+..+...|+..++-  
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~------~~~~~v~~~~~~~~p~~~  225 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP------SPNLLVTNHDASLFPNIY  225 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC------Ccceeeecccceeccccc
Confidence            3789999999999999999888876442     58999999988887776653321      1223333334333331  


Q ss_pred             -------CCCceeEEeec-----h-hhhcCCh---------------hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          227 -------ETGRYDVIWVQ-----W-CIGHLTD---------------DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       227 -------~~~~fD~Ii~~-----~-~l~~~~~---------------~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                             ....||-|.+-     . ++.+.++               .-...++.+..++||+||.++.++
T Consensus       226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST  296 (375)
T KOG2198|consen  226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST  296 (375)
T ss_pred             cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence                   12357877641     1 1111110               012457899999999999999875

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=89.86  E-value=1.7  Score=41.28  Aligned_cols=93  Identities=18%  Similarity=0.084  Sum_probs=58.3

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHh--CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCce
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~--~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  231 (348)
                      ..++.+||-+|||. |.++..++.+  +...|+++|.++.-++.+++ +..           . +. .  .++.. ...+
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~-----------~-~~-~--~~~~~-~~g~  223 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE-----------T-YL-I--DDIPE-DLAV  223 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc-----------e-ee-h--hhhhh-ccCC
Confidence            45678999999875 5555666654  23469999999988888864 211           0 00 0  11111 1248


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |+|+-.-.  .-   .....+....++|++||.+++..
T Consensus       224 d~viD~~G--~~---~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         224 DHAFECVG--GR---GSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             cEEEECCC--CC---ccHHHHHHHHHhCcCCcEEEEEe
Confidence            98885322  10   01356788889999999998764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK11524 putative methyltransferase; Provisional

Probab=89.47  E-value=0.36  Score=44.89  Aligned_cols=56  Identities=14%  Similarity=0.089  Sum_probs=37.9

Q ss_pred             ceeEEEcCCCCC--CCCCCceeEEeechhhhc------C----Ch----hhHHHHHHHHHHcCCCCcEEEEE
Q 018970          213 ATNFFCVPLQDF--TPETGRYDVIWVQWCIGH------L----TD----DDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       213 ~i~~~~~d~~~~--~~~~~~fD~Ii~~~~l~~------~----~~----~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      +..++++|..++  ..++++||+|++...+.-      .    ..    +-+..++..+.++|||||.|++.
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            345677776663  244578999998654321      0    00    11357899999999999999985

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=89.38  E-value=0.55  Score=45.56  Aligned_cols=62  Identities=6%  Similarity=0.159  Sum_probs=53.6

Q ss_pred             cceeEEEcCCCCCC--CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC
Q 018970          212 KATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR  273 (348)
Q Consensus       212 ~~i~~~~~d~~~~~--~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~  273 (348)
                      .++++++.++.+..  .+++++|.++......++++++..+.++++.+.++|||.+++-.....
T Consensus       275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~  338 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP  338 (380)
T ss_pred             CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence            57899999888753  346899999999999999999999999999999999999999765443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=89.25  E-value=2  Score=40.97  Aligned_cols=97  Identities=23%  Similarity=0.140  Sum_probs=58.1

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcC---CHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCc
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEP---VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR  230 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~---S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  230 (348)
                      ..++.+||-+|+|. |.++..+++.....|++++.   ++.-++.+++. ..         ..+.....+..+.. ..+.
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~-Ga---------~~v~~~~~~~~~~~-~~~~  238 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL-GA---------TYVNSSKTPVAEVK-LVGE  238 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CC---------EEecCCccchhhhh-hcCC
Confidence            34677899999875 66777776654336888886   67777777643 21         00111111111101 1246


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +|+|+-.-.       . ...+..+.++|++||.+++...
T Consensus       239 ~d~vid~~g-------~-~~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         239 FDLIIEATG-------V-PPLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             CCEEEECcC-------C-HHHHHHHHHHccCCcEEEEEec
Confidence            898886432       1 1366778899999999887543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=88.77  E-value=0.33  Score=47.89  Aligned_cols=104  Identities=12%  Similarity=0.084  Sum_probs=74.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC----CC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ET  228 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~  228 (348)
                      ..++.+|||.=|++|.-++..+.....  .|++.|.++..++..++++.-.+.     ...++....|+..+-.    ..
T Consensus       107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----~~ive~~~~DA~~lM~~~~~~~  181 (525)
T KOG1253|consen  107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----EDIVEPHHSDANVLMYEHPMVA  181 (525)
T ss_pred             ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----hhhcccccchHHHHHHhccccc
Confidence            356679999999999999888876444  899999999999999888765322     2223344445544321    23


Q ss_pred             CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ..||+|-.-    -..  ....||+.+.+.+..||.|+++.
T Consensus       182 ~~FDvIDLD----PyG--s~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  182 KFFDVIDLD----PYG--SPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             cccceEecC----CCC--CccHHHHHHHHHhhcCCEEEEEe
Confidence            579988642    111  35679999999999999999964

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=88.38  E-value=4.5  Score=38.20  Aligned_cols=92  Identities=13%  Similarity=-0.072  Sum_probs=58.0

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+||-.|+|. |..+..+++.....|++++.+++-++.+++.-.+.            +  .+..+..  .+.+|+
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~------------v--i~~~~~~--~~~~d~  226 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS------------A--GGAYDTP--PEPLDA  226 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce------------e--ccccccC--cccceE
Confidence            56788999999763 55566666554336999999988888887642210            0  1111111  135787


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      ++.....        ...+....++|++||.+++...
T Consensus       227 ~i~~~~~--------~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       227 AILFAPA--------GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             EEECCCc--------HHHHHHHHHhhCCCcEEEEEec
Confidence            6543221        1367788899999999988653

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=88.21  E-value=1.7  Score=42.59  Aligned_cols=88  Identities=14%  Similarity=-0.004  Sum_probs=55.2

Q ss_pred             CCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      -++.+|+-+|||+ |.....++......|+++|.++.-++.|+..    |         .+.  .++.+..   ...|+|
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G---------~~~--~~~~e~v---~~aDVV  261 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----G---------YEV--MTMEEAV---KEGDIF  261 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----C---------CEE--ccHHHHH---cCCCEE
Confidence            4678999999997 5555545544333699999999888777642    1         111  1111111   347999


Q ss_pred             eechhhhcCChhhHHHHHHH-HHHcCCCCcEEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKR-AKVGLKPGGFFVLKE  269 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~-~~~~LkpgG~lii~~  269 (348)
                      +..-.       . ...+.. ..+.+|+||.++...
T Consensus       262 I~atG-------~-~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         262 VTTTG-------N-KDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             EECCC-------C-HHHHHHHHHhcCCCCcEEEEeC
Confidence            86422       1 234444 588999999998764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=87.79  E-value=7.6  Score=30.23  Aligned_cols=103  Identities=17%  Similarity=0.127  Sum_probs=61.2

Q ss_pred             ccccHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCceeEEeech
Q 018970          166 SGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDVIWVQW  238 (348)
Q Consensus       166 cG~G~~~~~la~~---~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~Ii~~~  238 (348)
                      ||.|.++..+++.   ....|+++|.++..++.+++..             ..+..+|..+..    ..-...|.|++..
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-------------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-------------VEVIYGDATDPEVLERAGIEKADAVVILT   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-------------SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-------------cccccccchhhhHHhhcCccccCEEEEcc
Confidence            5556666666543   3336999999999988887642             567788887643    1224678777643


Q ss_pred             hhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       239 ~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      .     ++..--.+-...+-+.|...+++.-.                  .....+.|+++|...+
T Consensus        71 ~-----~d~~n~~~~~~~r~~~~~~~ii~~~~------------------~~~~~~~l~~~g~d~v  113 (116)
T PF02254_consen   71 D-----DDEENLLIALLARELNPDIRIIARVN------------------DPENAELLRQAGADHV  113 (116)
T ss_dssp             S-----SHHHHHHHHHHHHHHTTTSEEEEEES------------------SHHHHHHHHHTT-SEE
T ss_pred             C-----CHHHHHHHHHHHHHHCCCCeEEEEEC------------------CHHHHHHHHHCCcCEE
Confidence            3     22223344455566677777766532                  2235667777777654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=87.63  E-value=3.1  Score=37.93  Aligned_cols=106  Identities=15%  Similarity=0.210  Sum_probs=58.6

Q ss_pred             CCCCcEEEEeccccHHHHHHH---HhC--C-CcEEEEcCCH--------------------------HHHHHHHHHhCCC
Q 018970          156 NQHLVALDCGSGIGRITKNLL---IRY--F-NEVDLLEPVS--------------------------HFLDAARESLAPE  203 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la---~~~--~-~~v~~vD~S~--------------------------~~l~~a~~~~~~~  203 (348)
                      +-++.|+|+||=.|..+..++   ...  . ..++++|.=.                          ..++..++++...
T Consensus        73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~  152 (248)
T PF05711_consen   73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY  152 (248)
T ss_dssp             TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred             CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence            345789999999998665442   221  1 1566665211                          1355566666665


Q ss_pred             CCCCcCCCcceeEEEcCCCC-CCC-CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          204 NHMAPDMHKATNFFCVPLQD-FTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       204 ~~~~~~~~~~i~~~~~d~~~-~~~-~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |+.    ..++.++.+.+.+ ++. +...+-++.+-.-+.    +.....|..++..|.|||+++|-+
T Consensus       153 gl~----~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiIi~DD  212 (248)
T PF05711_consen  153 GLL----DDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGIIIFDD  212 (248)
T ss_dssp             TTS----STTEEEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             CCC----cccEEEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEEEEeC
Confidence            442    3478888887654 331 223443333322111    235678999999999999999876

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PTZ00357 methyltransferase; Provisional

Probab=87.55  E-value=2.2  Score=44.15  Aligned_cols=104  Identities=13%  Similarity=0.058  Sum_probs=61.6

Q ss_pred             CcEEEEeccccHHHHHHHHh----CCC-cEEEEcCCHHHHHHHHHHh-CCCCCCC--cCCCcceeEEEcCCCCCCCCC--
Q 018970          159 LVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESL-APENHMA--PDMHKATNFFCVPLQDFTPET--  228 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~----~~~-~v~~vD~S~~~l~~a~~~~-~~~~~~~--~~~~~~i~~~~~d~~~~~~~~--  228 (348)
                      ..|+-+|+|-|-+....+..    +.. .|++||-++..+.....+. ....+.+  ...+..++++..|+.++..+.  
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            46899999999986655543    222 7999999966444443332 2111211  112345899999999986331  


Q ss_pred             ---------CceeEEee--chhhhcCChhhHHHHHHHHHHcCCC----CcE
Q 018970          229 ---------GRYDVIWV--QWCIGHLTDDDFVSFFKRAKVGLKP----GGF  264 (348)
Q Consensus       229 ---------~~fD~Ii~--~~~l~~~~~~d~~~~l~~~~~~Lkp----gG~  264 (348)
                               +.+|+||+  -++|..-.  =-.+-|.-+.+.||+    +|+
T Consensus       782 ~s~~~P~~~gKaDIVVSELLGSFGDNE--LSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVSELLGSLGDNE--LSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehHhhhccccccc--CCHHHHHHHHHhhhhhcccccc
Confidence                     36999997  33433211  122445555666665    675

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=87.53  E-value=2.4  Score=39.80  Aligned_cols=96  Identities=22%  Similarity=0.235  Sum_probs=58.2

Q ss_pred             CCCcEEEEeccc-cHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          157 QHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       157 ~~~~VLDvGcG~-G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ++.+||-.|||. |..+..+++.. ...+++++.++...+.+++.-.+         ..+.....++..+....+.+|+|
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~---------~vi~~~~~~~~~~~~~~~~vd~v  235 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD---------ETVNLARDPLAAYAADKGDFDVV  235 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC---------EEEcCCchhhhhhhccCCCccEE
Confidence            678899988876 66777777654 33689999998888866553111         00111111111222122458999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +.....        ...++.+.+.|+++|.++...
T Consensus       236 ld~~g~--------~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         236 FEASGA--------PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             EECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence            864331        135677889999999988653

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=87.24  E-value=2.1  Score=38.35  Aligned_cols=98  Identities=20%  Similarity=0.143  Sum_probs=60.1

Q ss_pred             CCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-C-CCCCCcee
Q 018970          156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD  232 (348)
                      .++.+||..|+|. |..+..++.....+|++++.++...+.+++.-...         .++....+... . ....+.+|
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~d  203 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH---------VIDYKEEDLEEELRLTGGGGAD  203 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce---------eccCCcCCHHHHHHHhcCCCCC
Confidence            5678999999995 76777777665557999999988888775542110         00000000000 0 01125699


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +|+.+..-        ...+..+.+.|+++|.++....
T Consensus       204 ~vi~~~~~--------~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         204 VVIDAVGG--------PETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             EEEECCCC--------HHHHHHHHHhcccCCEEEEEcc
Confidence            99854221        1356677888999999887643

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=86.91  E-value=3.9  Score=32.50  Aligned_cols=86  Identities=14%  Similarity=0.101  Sum_probs=57.4

Q ss_pred             CCcEEEEecccc-HHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEe
Q 018970          158 HLVALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW  235 (348)
Q Consensus       158 ~~~VLDvGcG~G-~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii  235 (348)
                      .++|+|||-|-= ..+..|++++++ |+++|+.+.       +.          ...+.+...|+.+-... -...|+|+
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~-------~a----------~~g~~~v~DDitnP~~~iY~~A~lIY   75 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAERGFD-VLATDINEK-------TA----------PEGLRFVVDDITNPNISIYEGADLIY   75 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHcCCc-EEEEecccc-------cC----------cccceEEEccCCCccHHHhhCcccee
Confidence            459999999864 467777777886 999999876       11          22477888888774421 13568888


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      +...     +.++...+-.+.+.++-  -+++.
T Consensus        76 SiRp-----ppEl~~~ildva~aVga--~l~I~  101 (129)
T COG1255          76 SIRP-----PPELQSAILDVAKAVGA--PLYIK  101 (129)
T ss_pred             ecCC-----CHHHHHHHHHHHHhhCC--CEEEE
Confidence            7544     23677777777776544  44444

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=84.86  E-value=4.8  Score=37.57  Aligned_cols=86  Identities=22%  Similarity=0.144  Sum_probs=54.5

Q ss_pred             CCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          157 QHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       157 ~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ++.+||-+|||. |.++..+++. +...|.++|.++..++.+....            .+     |..+.  ....+|+|
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------------~i-----~~~~~--~~~g~Dvv  204 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------------VL-----DPEKD--PRRDYRAI  204 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------------cc-----Chhhc--cCCCCCEE
Confidence            456899999874 7777777755 4445778898887776664310            01     11110  12468988


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +-+-.       . ...+..+.++|++||.+++..
T Consensus       205 id~~G-------~-~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       205 YDASG-------D-PSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             EECCC-------C-HHHHHHHHHhhhcCcEEEEEe
Confidence            85432       1 245677888999999999764

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=84.69  E-value=2.5  Score=37.07  Aligned_cols=55  Identities=15%  Similarity=0.067  Sum_probs=38.7

Q ss_pred             hHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHH
Q 018970          138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE  198 (348)
Q Consensus       138 ~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~  198 (348)
                      +..++.+++...     ..++..|||.=||+|..+......+- ...|+|+++...+.|++
T Consensus       177 P~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  177 PVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHhh-----hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence            345666665432     35788999999999999887654444 59999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=84.63  E-value=2.8  Score=33.40  Aligned_cols=86  Identities=21%  Similarity=0.136  Sum_probs=57.9

Q ss_pred             cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------CCCCceeEEeechhh
Q 018970          167 GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PETGRYDVIWVQWCI  240 (348)
Q Consensus       167 G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD~Ii~~~~l  240 (348)
                      |.|.++..+++....+|+++|.++.-++.+++.-..            .+...+-.++.      .....+|+|+-+-.-
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~------------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD------------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS   68 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES------------EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc------------ccccccccccccccccccccccceEEEEecCc
Confidence            568888888877557899999999999999874211            12211111111      112479999864331


Q ss_pred             hcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          241 GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       241 ~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                              ...++.+..+|+|+|.+++.....
T Consensus        69 --------~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   69 --------GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             --------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             --------HHHHHHHHHHhccCCEEEEEEccC
Confidence                    257888999999999999986554

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=84.05  E-value=1.2  Score=39.55  Aligned_cols=64  Identities=16%  Similarity=0.187  Sum_probs=47.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  225 (348)
                      .-...-|.+||.|.|.+++.+++.+...+..++.++..+.-.+-.....       .....++..|+..+.
T Consensus        48 ~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa-------~~~~~IHh~D~LR~~  111 (326)
T KOG0821|consen   48 NLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA-------PGKLRIHHGDVLRFK  111 (326)
T ss_pred             ccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC-------CcceEEeccccceeh
Confidence            3445679999999999999999888888999999988877666544322       335666666765543

>TIGR00518 alaDH alanine dehydrogenase

Probab=83.82  E-value=1.6  Score=42.34  Aligned_cols=99  Identities=13%  Similarity=0.030  Sum_probs=54.0

Q ss_pred             CCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ++.+|+=+|+|. |..+...+......|+++|.++.-++.+...+..          .+.....+..++...-..+|+|+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----------~v~~~~~~~~~l~~~l~~aDvVI  235 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----------RIHTRYSNAYEIEDAVKRADLLI  235 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----------eeEeccCCHHHHHHHHccCCEEE
Confidence            456799999984 6666665554333699999998877766555432          11111111111110113689999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      ..-.+.-.+  .+.-+-+++.+.++||++++-
T Consensus       236 ~a~~~~g~~--~p~lit~~~l~~mk~g~vIvD  265 (370)
T TIGR00518       236 GAVLIPGAK--APKLVSNSLVAQMKPGAVIVD  265 (370)
T ss_pred             EccccCCCC--CCcCcCHHHHhcCCCCCEEEE
Confidence            753221110  111123556677899988775

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK11524 putative methyltransferase; Provisional

Probab=83.72  E-value=4.1  Score=37.82  Aligned_cols=59  Identities=17%  Similarity=0.052  Sum_probs=45.4

Q ss_pred             hHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC
Q 018970          138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (348)
Q Consensus       138 ~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~  202 (348)
                      ...++.+++...     ..++..|||.=||+|..+.... +....+.|+|++++.++.|++++..
T Consensus       194 P~~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        194 PEALLKRIILAS-----SNPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             hHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            345666665432     4678899999999999988655 4444699999999999999998753

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=83.11  E-value=1.2  Score=44.13  Aligned_cols=109  Identities=17%  Similarity=0.149  Sum_probs=71.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-------CCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-------TPE  227 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~~  227 (348)
                      +....+|-+|-|.|.+...+....+. .++++++.|.|++.|+.++.-.-      ..+..++-.|..++       ..+
T Consensus       294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q------~~r~~V~i~dGl~~~~~~~k~~~~  367 (482)
T KOG2352|consen  294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ------SDRNKVHIADGLDFLQRTAKSQQE  367 (482)
T ss_pred             cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh------hhhhhhhHhhchHHHHHHhhcccc
Confidence            44567899999999998887656553 89999999999999999875310      01122222222221       123


Q ss_pred             CCceeEEee----chhhhcCC--hhh--HHHHHHHHHHcCCCCcEEEEEecc
Q 018970          228 TGRYDVIWV----QWCIGHLT--DDD--FVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       228 ~~~fD~Ii~----~~~l~~~~--~~d--~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      +..||++..    .. .|-++  ...  -..++..+...|.|.|.+++--..
T Consensus       368 ~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~  418 (482)
T KOG2352|consen  368 DICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT  418 (482)
T ss_pred             ccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence            457999884    22 33332  112  346899999999999999875433

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=82.82  E-value=9.9  Score=35.41  Aligned_cols=96  Identities=19%  Similarity=0.106  Sum_probs=58.6

Q ss_pred             CCCCCcEEEEecc-ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG-~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+||-+||| .|..+..++......|++++.++..++.+++. ...        .-+.....+... . ..+.+|+
T Consensus       160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g~~--------~~~~~~~~~~~~-~-~~~~~d~  228 (330)
T cd08245         160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL-GAD--------EVVDSGAELDEQ-A-AAGGADV  228 (330)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-CCc--------EEeccCCcchHH-h-ccCCCCE
Confidence            5667889999987 67777777766444699999999888887542 210        000000000000 0 1245898


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ++....-        ...+..+.+.|+++|.++...
T Consensus       229 vi~~~~~--------~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         229 ILVTVVS--------GAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             EEECCCc--------HHHHHHHHHhcccCCEEEEEC
Confidence            8753221        135677788999999888754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=81.80  E-value=13  Score=35.45  Aligned_cols=99  Identities=16%  Similarity=-0.045  Sum_probs=58.7

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CC--CCCC
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT--PETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~  229 (348)
                      ..++.+||-.|||. |..+..+++.... .|+++|.++..++.+++.-.+         .-++....+..+ +.  ....
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~---------~~i~~~~~~~~~~i~~~~~~~  244 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGAT---------HTVNSSGTDPVEAIRALTGGF  244 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc---------eEEcCCCcCHHHHHHHHhCCC
Confidence            56788999999864 5566666655433 599999999998888653111         001111111100 00  1113


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      .+|+|+-.-.       . ...+....+.|++||.+++...
T Consensus       245 g~d~vid~~g-------~-~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       245 GADVVIDAVG-------R-PETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCEEEECCC-------C-HHHHHHHHHHhccCCEEEEECC
Confidence            5898875322       1 1356667789999999987643

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK13699 putative methylase; Provisional

Probab=81.50  E-value=5.9  Score=35.57  Aligned_cols=58  Identities=21%  Similarity=0.153  Sum_probs=44.0

Q ss_pred             HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC
Q 018970          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (348)
Q Consensus       139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~  202 (348)
                      ..++..++...     ..++..|||.=||+|..+......+- .+.|+|+++...+.+.+++..
T Consensus       150 ~~l~~~~i~~~-----s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        150 VTSLQPLIESF-----THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             HHHHHHHHHHh-----CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence            35555555321     35778999999999999887664444 599999999999999888753

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=81.33  E-value=6.5  Score=37.45  Aligned_cols=98  Identities=13%  Similarity=0.038  Sum_probs=60.8

Q ss_pred             CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCC-C-CCCCC
Q 018970          155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~  229 (348)
                      +.++.+||=.|+  |.|.++..+++....+|++++.++...+.+++.+..        ..-++.... ++.+ + ....+
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~~~~  227 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF--------DEAFNYKEEPDLDAALKRYFPE  227 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC--------CEEEECCCcccHHHHHHHHCCC
Confidence            567889999998  368888888866544699999998888877644332        111111110 1110 0 01123


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+|+|+-+-.       .  ..+..+.++|++||.+++..
T Consensus       228 gvD~v~d~vG-------~--~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        228 GIDIYFDNVG-------G--DMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             CcEEEEECCC-------H--HHHHHHHHHhccCCEEEEEC
Confidence            6898885322       1  35677888999999998754

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=81.16  E-value=12  Score=33.81  Aligned_cols=94  Identities=17%  Similarity=-0.006  Sum_probs=57.9

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCc-EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~-v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      ..++.+||-.|||. |..+..+++..... |++++.+++.++.+++.-...        .-+... .   .. .....+|
T Consensus        95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~--------~~~~~~-~---~~-~~~~~~d  161 (277)
T cd08255          95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPAD--------PVAADT-A---DE-IGGRGAD  161 (277)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCc--------cccccc-h---hh-hcCCCCC
Confidence            56778899998875 66666676664445 999999998888776541010        000000 0   01 1224689


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|+..-.-        ...+....+.|+++|.++...
T Consensus       162 ~vl~~~~~--------~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         162 VVIEASGS--------PSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             EEEEccCC--------hHHHHHHHHHhcCCcEEEEEe
Confidence            88853211        135677788899999988653

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=80.91  E-value=0.88  Score=44.20  Aligned_cols=64  Identities=13%  Similarity=0.049  Sum_probs=50.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD  223 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~  223 (348)
                      .+++..|.|+=||.|-++..++.++. .|++.|.++++++..+.+++-..+.    ..++..+..|+.+
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~----~~~iei~Nmda~~  310 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVD----PSAIEIFNMDAKD  310 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccc----hhheeeecccHHH
Confidence            46788999999999999999998885 5999999999999999987653221    2336666665544

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=80.38  E-value=14  Score=35.38  Aligned_cols=99  Identities=17%  Similarity=-0.035  Sum_probs=58.5

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CC-CCCCc
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGR  230 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~  230 (348)
                      +.++.+||-.|+|. |.++..+++. +...|+++|.++..++.+++.-...         -++....++.+ +. ...+.
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~---------~i~~~~~~~~~~i~~~~~~g  259 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA---------TVNAGDPNAVEQVRELTGGG  259 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce---------EeCCCchhHHHHHHHHhCCC
Confidence            56778899999874 5566666655 3436999999999998886531110         01111111100 00 11235


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +|+|+-.-.  .      ...+..+.+.|+++|.+++...
T Consensus       260 ~d~vid~~G--~------~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         260 VDYAFEMAG--S------VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCEEEECCC--C------hHHHHHHHHHHhcCCEEEEEcc
Confidence            898885321  1      1356677788999999887543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	348
2ex4_A	241	Crystal Structure Of Human Methyltransferase Ad-003		8e-48
1xtp_A	254	Structural Analysis Of Leishmania Major Lmaj004091a		1e-47

>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In Complex With S-adenosyl-l-homocysteine Length = 241

Iteration: 1
 Score =  187 bits (475), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 94/232 (40%), Positives = 134/232 (57%), Gaps = 9/232 (3%)
Query: 93  GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPN 152
           G   E  E + Q+Y +  +YW+ +  +VDG+LGG+G+++ +DI  S  FLQ  L +  PN
Sbjct: 18  GSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PN 76
Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212
                   ALDCG+GIGRITK LL+  F EVD+++    FL  A+  L  E        +
Sbjct: 77  KTGTS--CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------R 128
Query: 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272
             N+FC  LQDFTPE   YDVIW+QW IGHLTD     F +R K  L+P G  V+K+N+A
Sbjct: 129 VRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 188
Query: 273 RSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
           + G +LD  D S+ R     + +    GL +   + Q+ LP+E++ V  +AL
Sbjct: 189 QEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFAL 240

>pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A Sam-dependent Methyltransferase Of The Duf858/pfam05891 Family Length = 254

Iteration: 1
 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/271 (39%), Positives = 152/271 (56%), Gaps = 20/271 (7%)
Query: 56  GAAADPKHKESS-AMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWE 114
           G  + P  + SS  + +SG D++GK +++ +E W+ ++  D    EK   WY + + YW 
Sbjct: 1   GPGSXPSKEASSRNLPISGRDTNGKTYRSTDEXWKAELTGDLYDPEK--GWYGKALEYWR 58
Query: 115 GVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKN 174
            V A+V GVLGG  +V++VDI+GS  F+  L     P    ++   ALDCG+GIGRITKN
Sbjct: 59  TVPATVSGVLGGXDHVHDVDIEGSRNFIASL-----PGHGTSR---ALDCGAGIGRITKN 110
Query: 175 LLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234
           LL + +   DLLEPV H L+ A+  LA              F     +  T     YD+I
Sbjct: 111 LLTKLYATTDLLEPVKHXLEEAKRELA--------GXPVGKFILASXETATLPPNTYDLI 162
Query: 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG-FVLDKEDRSITRSDFYFK 293
            +QW   +LTD DFV FFK  +  L P G+   KEN +    F++DKED S+TRSD ++K
Sbjct: 163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYK 222
Query: 294 ELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
            LF+  G+ + K   Q+  P +LF +K YAL
Sbjct: 223 RLFNESGVRVVKEAFQEEWPTDLFPLKXYAL 253

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	1e-84
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	9e-80
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	1e-09
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	5e-09
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	6e-09
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	8e-09
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	2e-08
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	2e-08
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	7e-08
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	8e-08
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	1e-07
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	1e-07
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	2e-07
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	4e-07
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	5e-07
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	1e-06
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	1e-06
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	2e-06
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	3e-06
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	3e-06
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	4e-06
3f4k_A	257	Putative methyltransferase; structural genomics, P	4e-06
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	6e-06
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	1e-05
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	3e-05
3lcc_A	235	Putative methyl chloride transferase; halide methy	3e-05
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	6e-05
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	7e-05
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	8e-05
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	8e-05
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	1e-04
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-04
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	2e-04
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	4e-04
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	5e-04
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	5e-04
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	9e-04

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score =  256 bits (654), Expect = 1e-84
 Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 19/265 (7%)

Query: 61  PKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASV 120
            K   S  + +SG D++GK +++ +EMW+ ++   G+  + +  WY + + YW  V A+V
Sbjct: 7   SKEASSRNLPISGRDTNGKTYRSTDEMWKAEL--TGDLYDPEKGWYGKALEYWRTVPATV 64

Query: 121 DGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180
            GVLGG  +V++VDI+GS  F+  L       A        LDCG+GIGRITKNLL + +
Sbjct: 65  SGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRA--------LDCGAGIGRITKNLLTKLY 116

Query: 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCI 240
              DLLEPV H L+ A+  LA              F    ++  T     YD+I +QW  
Sbjct: 117 ATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETATLPPNTYDLIVIQWTA 168

Query: 241 GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS-GFVLDKEDRSITRSDFYFKELFSRC 299
            +LTD DFV FFK  +  L P G+   KEN +    F++DKED S+TRSD ++K LF+  
Sbjct: 169 IYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNES 228

Query: 300 GLHIYKSKDQKGLPEELFAVKMYAL 324
           G+ + K   Q+  P +LF +KMYAL
Sbjct: 229 GVRVVKEAFQEEWPTDLFPLKMYAL 253

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score =  242 bits (619), Expect = 9e-80
 Identities = 91/232 (39%), Positives = 132/232 (56%), Gaps = 9/232 (3%)

Query: 93  GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPN 152
           G   E  E + Q+Y +  +YW+ +  +VDG+LGG+G+++ +DI  S  FLQ  L +    
Sbjct: 18  GSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK 77

Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212
              +  L   DCG+GIGRITK LL+  F EVD+++    FL  A+  L  E        +
Sbjct: 78  TGTSCAL---DCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------R 128

Query: 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272
             N+FC  LQDFTPE   YDVIW+QW IGHLTD     F +R K  L+P G  V+K+N+A
Sbjct: 129 VRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 188

Query: 273 RSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
           + G +LD  D S+ R     + +    GL +   + Q+ LP+E++ V  +AL
Sbjct: 189 QEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFAL 240

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 26/129 (20%), Positives = 38/129 (29%), Gaps = 20/129 (15%)

Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198
            A L   L +    A+       L+ G G G   + +L   F +VD  +        A  
Sbjct: 31  SATLTKFLGELPAGAK------ILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASR 83

Query: 199 SLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVG 258
                               +           YD +W   C+ H+  D+     K     
Sbjct: 84  ------------RLGRPVRTMLFHQL-DAIDAYDAVWAHACLLHVPRDELADVLKLIWRA 130

Query: 259 LKPGGFFVL 267
           LKPGG F  
Sbjct: 131 LKPGGLFYA 139

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 56.8 bits (136), Expect = 5e-09
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 2/107 (1%)

Query: 162 LDCGSGIGRITKNLL--IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
           +D G G G +  +LL        +  ++     L  A + L  + +      K+   +  
Sbjct: 726 VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDG 785

Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266
            + +F       D+      I H+ +D    F ++      P    V
Sbjct: 786 SILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 55.7 bits (134), Expect = 6e-09
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 15/171 (8%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
           L+  +G+GR+T   L   + EV  LE  +  L A R+ LA       D+          +
Sbjct: 87  LELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAP---ADVRDRCTLVQGDM 142

Query: 222 QDFTPETGRYD-VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL---------KENI 271
             F  +  R+  V+     I  L + D    +   +  L+PGG F+L          E +
Sbjct: 143 SAFALD-KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPL 201

Query: 272 ARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMY 322
            R   +  +  R       +      +        +            ++ 
Sbjct: 202 ERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLL 252

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 54.1 bits (130), Expect = 8e-09
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 19/144 (13%)

Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198
            A L+ L +              L+  SG G  T++L       V  L+  +  +  A  
Sbjct: 35  PAALERLRAGN-IRGD------VLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR 86

Query: 199 SLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVG 258
                            F    L D+TP+  ++D ++    + H+ DD F +F++  +  
Sbjct: 87  HGLD----------NVEFRQQDLFDWTPD-RQWDAVFFAHWLAHVPDDRFEAFWESVRSA 135

Query: 259 LKPGGFFVLKENIARSGFVLDKED 282
           + PGG     +       +  ++D
Sbjct: 136 VAPGGVVEFVDVTDHERRLEQQDD 159

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 25/147 (17%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
            LD GSG GR T +L      +++ LEP +  ++ AR++           H +  F    
Sbjct: 45  ILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQT-----------HPSVTFHHGT 92

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK 280
           + D +    R+  +   + + H+   +        ++ ++ GG  ++      SG  L+ 
Sbjct: 93  ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM---SFFSGPSLEP 149

Query: 281 EDRSITRSDFY----FKELFSRCGLHI 303
               +  +  +      +     G  +
Sbjct: 150 MYHPVATAYRWPLPELAQALETAGFQV 176

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 2/106 (1%)

Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
           +D G G G +   LL  + F ++  ++     L+ A++ L  +  +     K  + F   
Sbjct: 34  IDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID-RLPEMQRKRISLFQSS 92

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266
           L         YD   V   I HL ++   +F K      +P    V
Sbjct: 93  LVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 51.3 bits (123), Expect = 7e-08
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 8/107 (7%)

Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
            LD G G GR +  L    + +VD  +  +  +       + EN          +   V 
Sbjct: 36  TLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENL------DNLHTRVVD 88

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
           L + T +  +YD I     +  L            +   KPGG+ ++
Sbjct: 89  LNNLTFD-RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 134

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 51.1 bits (122), Expect = 8e-08
 Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
           +D G G G + K LL   +F ++  ++     L+ A+E L           +        
Sbjct: 34  IDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQ-LIQGA 92

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266
           L         YD   V   I HL      +F +      +P    V
Sbjct: 93  LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIV 138

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 24/171 (14%)

Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190
            +VD K    F+     +      +      LD   G G +T+  L   F     ++   
Sbjct: 16  ADVDYKKWSDFIIEKCVENNLVFDD-----YLDLACGTGNLTE-NLCPKFKNTWAVDLSQ 69

Query: 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC-IGHLTD-DDF 248
             L  A      +              C  + +      ++D+I        ++ D DD 
Sbjct: 70  EMLSEAENKFRSQGLKP-------RLACQDISNL-NINRKFDLITCCLDSTNYIIDSDDL 121

Query: 249 VSFFKRAKVGLKPGGFFV--------LKENIARSGFVLDKEDRSITRSDFY 291
             +FK     LK GG F+        L + +  + F  D ++      + +
Sbjct: 122 KKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQF 172

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 29/206 (14%)

Query: 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHF 192
            D     + +  L+  R P A +      LD   G G   ++    +  +   LE     
Sbjct: 21  KDYAAEASDIADLVRSRTPEASS-----LLDVACGTGTHLEHFTKEFG-DTAGLELSEDM 74

Query: 193 LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW-CIGHL-TDDDFVS 250
           L  AR+ L        DM           +DF     ++  +   +  +G+L T ++  +
Sbjct: 75  LTHARKRLPDATLHQGDM-----------RDFRLG-RKFSAVVSMFSSVGYLKTTEELGA 122

Query: 251 FFKRAKVGLKPGGFFVL----KENIARSGFV----LDKEDRSITRSDFYFKELFS-RCGL 301
                   L+PGG  V+           G+V    + ++ R++ R     +E  + R  +
Sbjct: 123 AVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEV 182

Query: 302 HIYKSKDQKGLPEELFAVKMYALTAE 327
           H   +   KG+        +      
Sbjct: 183 HFTVADPGKGVRHFSDVHLITLFHQA 208

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 21/161 (13%)

Query: 162 LDCGSGIGRITKNLL-------IRYFNEVDLLEPVSHFLDAARESLAPENHMAP---DMH 211
           L  G G G I   +L              +++EP +  +   +E +A  +++       H
Sbjct: 57  LSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWH 116

Query: 212 KATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271
           K T+           E  ++D I +   + ++   D  +  K     L      ++    
Sbjct: 117 KETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVS 174

Query: 272 ARSGFV---------LDKEDRSITRSDFYFKELFSRCGLHI 303
             SG+            ++D     +     ++    GL  
Sbjct: 175 GSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKY 215

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 12/108 (11%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
           LD   G G  T   L     EV  L+     L  AR         A + +    F    +
Sbjct: 46  LDLACGTGIPTL-ELAERGYEVVGLDLHEEMLRVARRK-------AKERNLKIEFLQGDV 97

Query: 222 QDFTPETGRYDVIWVQWC--IGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
            +   +   +D +   +   I +  ++D    F +    LKPGG F+ 
Sbjct: 98  LEIAFK-NEFDAV-TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 37/204 (18%), Positives = 68/204 (33%), Gaps = 31/204 (15%)

Query: 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFL 193
           D     A L  L+    P A +      LD   G G   ++L   +   V+ LE  +  L
Sbjct: 32  DYHREAADLAALVRRHSPKAAS-----LLDVACGTGMHLRHLADSFG-TVEGLELSADML 85

Query: 194 DAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW-CIGHL-TDDDFVSF 251
             AR           DM           +DF+    R+  +   +  IGHL    +  + 
Sbjct: 86  AIARRRNPDAVLHHGDM-----------RDFSLG-RRFSAVTCMFSSIGHLAGQAELDAA 133

Query: 252 FKRAKVGLKPGGFFVL--------KENIARSGFVLDKEDRSITRSDFY-FKELFSRCGLH 302
            +R    + P G  V+              +   ++    ++TR      +   +R  +H
Sbjct: 134 LERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVH 193

Query: 303 IYKSKDQKGLP--EELFAVKMYAL 324
              +   +G+   EE   + ++  
Sbjct: 194 YLVAGPDRGITHHEESHRITLFTR 217

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 9/109 (8%)

Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
            LD G G GR +      Y + +     V    D    S+A  N      +   +     
Sbjct: 124 VLDLGCGQGRNS-----LYLSLLGY--DV-TSWDHNENSIAFLNETKEKENLNISTALYD 175

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
           +     +   YD I        L  +   S  K  K     GG+ ++  
Sbjct: 176 INAANIQ-ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 42/217 (19%), Positives = 68/217 (31%), Gaps = 22/217 (10%)

Query: 57  AAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGV 116
           A    K  E    E   L   G   +         + ++ E     + W         G 
Sbjct: 138 AGDKNKGFERYFKEARALLGYGVVVRREGPYRVALLEKEKEAPPLPSLWRAFSARI-LGA 196

Query: 117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL 176
           E +   + G F    +VD   S   L+ L     P     + ++ L  G G   +    L
Sbjct: 197 EYTFHHLPGVFSA-GKVDP-ASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLP---L 251

Query: 177 IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236
            R   EV  +E     + + ++ L   N +      +     +       E  R+D+I  
Sbjct: 252 ARMGAEVVGVEDDLASVLSLQKGLE-ANALKAQALHSDVDEAL------TEEARFDII-- 302

Query: 237 QWC-----IGHLTDDDFV-SFFKRAKVGLKPGGFFVL 267
                   +G     D   +F   A   L+PGG F L
Sbjct: 303 -VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 10/107 (9%)

Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
            L    G GR    L    + EV         +D +   LA    +A +           
Sbjct: 33  ILCLAEGEGRNACFLASLGY-EV-------TAVDQSSVGLAKAKQLAQEKGVKITTVQSN 84

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
           L DF      ++ I   +C  HL        + +   GLKPGG F+L
Sbjct: 85  LADFDIVADAWEGIVSIFC--HLPSSLRQQLYPKVYQGLKPGGVFIL 129

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 18/142 (12%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
            D G G G  T  LL  ++ EV  ++     L+ A+E        A + ++  +F+   +
Sbjct: 38  ADIGCGTGTATL-LLADHY-EVTGVDLSEEMLEIAQEK-------AMETNRHVDFWVQDM 88

Query: 222 QDFTPETGRYDVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVL--------KENIA 272
           ++         +  +   + +L T+ D    F  A   L  GG  +         +    
Sbjct: 89  RELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFN 148

Query: 273 RSGFVLDKEDRSITRSDFYFKE 294
              +    E  S        +E
Sbjct: 149 GKTYATHAEQSSYIWFADPGEE 170

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 13/173 (7%)

Query: 114 EGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITK 173
             ++   D V G +       I   + F  + +         N  +  LD G+G G ++ 
Sbjct: 4   SEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSV-SIASVDTENPDI--LDLGAGTGLLSA 60

Query: 174 NLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232
            L+ +Y      L++     L+ A+        +         +       +  E  +YD
Sbjct: 61  FLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKV--------KYIEADYSKYDFE-EKYD 111

Query: 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSI 285
           ++     I HL D+D    +KR+   LK  G F+  + +      ++  +++I
Sbjct: 112 MVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTI 164

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 25/138 (18%), Positives = 39/138 (28%), Gaps = 14/138 (10%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
           LD G G GRI   L  +   +V   +     +D A++                 +    L
Sbjct: 51  LDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQD-----------FPEARWVVGDL 98

Query: 222 QDFTPETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK 280
                    +D+I      +G L +D            L   G  V+    A  G+V   
Sbjct: 99  SVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVI-GFGAGRGWVFGD 157

Query: 281 EDRSITRSDFYFKELFSR 298
                 R     +  F  
Sbjct: 158 FLEVAERVGLELENAFES 175

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
            D G G G  T  L      ++  ++    F++   E  A + + A             +
Sbjct: 51  ADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNE-NAVKANCADR----VKGITGSM 105

Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
            +   +    D+IW +  I ++  +  ++ + +    LK GGF  + E
Sbjct: 106 DNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKY---LKKGGFIAVSE 150

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 45.7 bits (108), Expect = 6e-06
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
           LDCG+G      ++ +    +   +E     L  A    + EN+   ++ K  +   +P 
Sbjct: 28  LDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN-FSRENNFKLNISKG-DIRKLPF 85

Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
           +D          ++    I H+  +D        K  LKPGG   +
Sbjct: 86  KD-----ESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACI 126

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 35/160 (21%), Positives = 51/160 (31%), Gaps = 32/160 (20%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
           L+ G G G +T  LL+     V  +EP       A+E L  E             F +  
Sbjct: 50  LEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLPKE-------------FSITE 95

Query: 222 QDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD 279
            DF         D I   +   HLTDD+      +    L  GG  V  + I       D
Sbjct: 96  GDFLSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYD 155

Query: 280 KEDRSITRSDFYF----------------KELFSRCGLHI 303
           K   +  +  F+                 + +F   G H+
Sbjct: 156 KTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHV 195

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
           LD GSG+G     +  +Y      ++  S+ ++ A E     N+      +A +      
Sbjct: 60  LDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANE-RVSGNNKII--FEANDILTKEF 116

Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKE 281
            +       +D+I+ +  I  L+ ++    F++    LKP G  ++ +  A      D E
Sbjct: 117 PE-----NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDE 171

Query: 282 DRSITRSDFY-------FKELFSRCGLHIYKSKD 308
            +   +   Y       + ++ + C      SKD
Sbjct: 172 FKEYVKQRKYTLITVEEYADILTACNFKNVVSKD 205

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 11/141 (7%)

Query: 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
           L+ G GIG  T  L     + E+  ++     L+ ARE+            +A N F +P
Sbjct: 42  LEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQA-NIFSLP 100

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD 279
            +D       +D I+V + + HL   ++ +   K+    LKPGG   + E    S +   
Sbjct: 101 FED-----SSFDHIFVCFVLEHLQSPEEALKSLKKV---LKPGGTITVIEGDHGSCYFHP 152

Query: 280 KEDRSITRSDFYFKELFSRCG 300
           +  ++I   +   +      G
Sbjct: 153 EGKKAIEAWNCLIRVQAYMKG 173

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 24/147 (16%), Positives = 42/147 (28%), Gaps = 19/147 (12%)

Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
           AL  G G G     +       V  L+     L  A E     +  A        F    
Sbjct: 70  ALVPGCGGGHDVVAMASPERF-VVGLDISESALAKANE-TYGSSPKAEYFS----FVKED 123

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK 280
           +  + P    +D+I+       +  +   ++ K     LKP G  +         + +  
Sbjct: 124 VFTWRPT-ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELIT------LMYPITD 176

Query: 281 ED----RSITRSDFYFKELFSRCGLHI 303
                   +  S   F+E+    G   
Sbjct: 177 HVGGPPYKVDVST--FEEVLVPIGFKA 201

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
            D G G G  T  L      +V  L+ +S F+D      A ++ +   +          +
Sbjct: 51  ADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNR-NARQSGLQNRVT----GIVGSM 105

Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
            D        D+IW +  I ++  +  ++ +++    LK GG+  + E
Sbjct: 106 DDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKY---LKKGGYLAVSE 150

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 33/196 (16%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVP 220
           LD G+G G   + L+ ++   +D L           E    +  +A ++  K  +F  +P
Sbjct: 87  LDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEE-YNNQAGLADNITVKYGSFLEIP 145

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD 279
            +D       YD IW Q    H  D         R    LKP G   + + +   G    
Sbjct: 146 CED-----NSYDFIWSQDAFLHSPDKLKVFQECARV---LKPRGVMAITDPMKEDGIDKS 197

Query: 280 KEDRSITRSDFY-------FKELFSRCGLHIYKSKDQKGLPEELFAVKMYALTAEMPRRV 332
                + R   +       ++ L   CGL   ++                     +    
Sbjct: 198 SIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS---------------RPDSLVHHY 242

Query: 333 SKSRSKVQANRPGIIR 348
           SK ++++      I  
Sbjct: 243 SKVKAELIKRSSEIAS 258

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 13/173 (7%)

Query: 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE 182
           V   + ++N  + +     L+ LL               LD   G+G  +  LL  Y  E
Sbjct: 9   VFPTYTDINSQEYRSRIETLEPLLMKYMKKRGK-----VLDLACGVGGFSF-LLEDYGFE 62

Query: 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH 242
           V  ++     +  ARE        A        F     +  + E   +D +     I H
Sbjct: 63  VVGVDISEDMIRKAREY-------AKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115

Query: 243 LTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKEL 295
               +    FK  +  LKP G F++     R      KE   + +  +  K +
Sbjct: 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVI 168

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 42.8 bits (100), Expect = 8e-05
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 8/135 (5%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
           LD G G G            E   ++     ++ AR              +A + +   +
Sbjct: 69  LDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM 128

Query: 222 QDFTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD 279
                    +DVI  Q+   +   T +      +     L+PGG+F++   +     +L+
Sbjct: 129 DLGKE----FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM--TVPSRDVILE 182

Query: 280 KEDRSITRSDFYFKE 294
           +  +    +DFY  E
Sbjct: 183 RYKQGRMSNDFYKIE 197

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
            L+ G   G  T+  L  +   + +++ +   +  A +     +H+        ++    
Sbjct: 55  GLEIGCAAGAFTE-KLAPHCKRLTVIDVMPRAIGRACQRTKRWSHI--------SWAATD 105

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVL 267
           +  F+     +D+I V   + +L D     +        L PGG  V 
Sbjct: 106 ILQFSTA-ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 15/130 (11%)

Query: 146 LSDRFPNARNNQHLVALDCGSGIGRITKNL--LIRYFNEVDLLEPVSHFLDAARESLAPE 203
                    + +  + +D G G G  T  +   ++ F ++   +  +  +  A       
Sbjct: 25  FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEG- 83

Query: 204 NHMAPDMHKATNFFCVPLQDFTP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 257
              +PD +K  +F      DF        +  + D+I    C  H  D +   F + A  
Sbjct: 84  ---SPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFE--KFQRSAYA 137

Query: 258 GLKPGGFFVL 267
            L+  G   +
Sbjct: 138 NLRKDGTIAI 147

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 5/109 (4%)

Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
            +D   G G  TK  L ++F  V  L+     L+ A +      +++  +          
Sbjct: 60  LIDFACGNGTQTK-FLSQFFPRVIGLDVSKSALEIAAKE-NTAANISYRLLDGLVP--EQ 115

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
                 E G  ++        H+  +      +  ++ L   G   L E
Sbjct: 116 AAQIHSEIGDANIYMRT-GFHHIPVEKRELLGQSLRILLGKQGAMYLIE 163

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 8/113 (7%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVP 220
           LD   G G  +  L+   F  V  ++     L  A +                     + 
Sbjct: 62  LDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120

Query: 221 LQDFTPETGRYDVIWVQW-CIGHLTD-----DDFVSFFKRAKVGLKPGGFFVL 267
           L    P    +D +        HL D      +     K     ++PGG  V+
Sbjct: 121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 26/172 (15%)

Query: 104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALD 163
              +      EG + ++      F     +DI G+  F+Q L  +             +D
Sbjct: 179 DAPQTVSWKLEGTDWTIHNHANVFSR-TGLDI-GARFFMQHLPENLEGEI--------VD 228

Query: 164 CGSGIGRITKNLLIRYFN-EVDLLEPVSHF-LDAARESLAPENHMAPDMHKATNFFCVPL 221
            G G G I   LL +    +V  ++  S   + ++R ++    +M   + +        L
Sbjct: 229 LGCGNGVIGLTLLDKNPQAKVVFVD-ESPMAVASSRLNVE--TNMPEALDRCEFMINNAL 285

Query: 222 QDFTPETGRYDVIWVQWC-----IGHLTDDDFV-SFFKRAKVGLKPGGFFVL 267
               P   R++ +    C       H   D+     F  A+  LK  G   +
Sbjct: 286 SGVEPF--RFNAVL---CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 23/181 (12%), Positives = 46/181 (25%), Gaps = 33/181 (18%)

Query: 162 LDCGSGIGRITKNLLIRY-------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214
           LD G   G+     +           +    L      L+  R+  A  +          
Sbjct: 184 LDIGGNTGKWATQCVQYNKEVEVTIVD----LPQQ---LEMMRKQTAGLSGSERIHGHGA 236

Query: 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA-- 272
           N          P    +D +W+   +   ++++ +S   R    +       + E +   
Sbjct: 237 NLL----DRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR 292

Query: 273 -RSG------------FVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAV 319
            R              F       S               GL + + +D  GL   +   
Sbjct: 293 QRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQC 352

Query: 320 K 320
           +
Sbjct: 353 R 353

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 31/163 (19%)

Query: 113 WEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRIT 172
           +     +V  + G F   + +D+ GS+  L  L                LD G G G ++
Sbjct: 162 YSVDGLTVKTLPGVFSR-DGLDV-GSQLLLSTLTPHTKGKV--------LDVGCGAGVLS 211

Query: 173 KNLLIRYFN-EVDLLEPVSHF-LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230
                      + L + VS   ++A+R +LA               F   +  F+   GR
Sbjct: 212 VAFARHSPKIRLTLCD-VSAPAVEASRATLA-------ANGVEGEVFASNV--FSEVKGR 261

Query: 231 YDVIWVQWC-----IGHLTDDDFV-SFFKRAKVGLKPGGFFVL 267
           +D+I           G  T  D   +  + A   L  GG   +
Sbjct: 262 FDMII---SNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI 301

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.97
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.95
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.88
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.87
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.86
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.86
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.85
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.85
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.84
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.84
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.84
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.84
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.83
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.83
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.83
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.82
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.82
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.82
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.82
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.82
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.82
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.82
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.82
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.81
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.81
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.81
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.81
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.81
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.81
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.8
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.8
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.8
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.8
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.8
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.8
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.8
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.8
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.79
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.78
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.78
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.78
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.77
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.77
3ocj_A	305	Putative exported protein; structural genomics, PS	99.77
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.77
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.77
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.76
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.76
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.76
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.76
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.76
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.76
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.76
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.75
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.75
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.75
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.75
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.75
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.75
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.75
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.75
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.75
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.75
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.75
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.75
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.74
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.74
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.74
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.74
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.73
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.73
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.73
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.73
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.73
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.73
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.72
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.72
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.72
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.71
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.71
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.69
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.68
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.68
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.68
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.67
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.67
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.67
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.67
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.67
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.67
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.67
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.67
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.66
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.65
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.65
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.65
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.64
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.64
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.64
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.63
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.63
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.63
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.63
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.63
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.63
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.62
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.62
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.62
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.62
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.61
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.61
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.6
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.6
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.6
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.59
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.58
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.58
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.58
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.58
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.58
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.58
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.57
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.56
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.56
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.55
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.55
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.55
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.55
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.55
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.54
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.54
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.54
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.54
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.53
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.53
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.53
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.53
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.53
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.52
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.52
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.52
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.52
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.52
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.52
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.52
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.51
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.51
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.51
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.51
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.5
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.5
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.49
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.49
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.49
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.49
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.49
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.49
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.49
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.48
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.48
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.48
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.48
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.47
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.47
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.47
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.47
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.46
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.46
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.45
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.45
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.45
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.45
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.44
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.44
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.44
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.44
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.43
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.43
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.41
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.41
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.41
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.41
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.41
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.41
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.4
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.4
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.4
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.39
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.39
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.39
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.38
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.38
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.38
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.38
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.37
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.37
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.36
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.36
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.35
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.35
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.35
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.34
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.34
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.34
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.33
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.33
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.32
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.32
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.32
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.31
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.31
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.31
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.3
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.29
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.28
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.27
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.27
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.27
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.27
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.26
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.26
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.26
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.26
2o07_A	304	Spermidine synthase; structural genomics, structur	99.26
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.26
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.25
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.25
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.25
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.24
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.24
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.24
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.23
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.23
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.22
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.21
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.2
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.2
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.18
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.18
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.14
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.14
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.12
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.12
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.12
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.11
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.11
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.06
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.03
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.03
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.02
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.02
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.02
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.98
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.97
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.95
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.94
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.94
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.83
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.8
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.8
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.78
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.77
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.75
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.74
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.74
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.7
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.67
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.66
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.66
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.63
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.61
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.59
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.56
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.55
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.52
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.5
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.5
3khk_A	544	Type I restriction-modification system methylation	98.44
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.44
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.39
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.38
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.38
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.35
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.34
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.33
3lkd_A	542	Type I restriction-modification system methyltrans	98.31
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.24
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.13
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.09
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.09
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.04
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.0
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.97
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.8
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.79
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.77
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.58
3ufb_A	530	Type I restriction-modification system methyltran	97.51
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.33
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.09
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.08
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.86
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.81
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.8
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.57
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.45
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.33
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.28
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.28
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.23
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.02
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.97
3me5_A	482	Cytosine-specific methyltransferase; structural ge	95.61
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	94.95
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	94.79
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.34
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.15
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	93.99
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	93.8
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.73
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.72
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.69
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.6
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	93.14
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	93.12
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	93.09
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	93.06
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	92.95
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	92.89
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.77
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	92.75
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	92.61
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	92.5
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	92.38
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	92.32
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	92.18
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	92.02
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.69
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.58
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	91.55
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	91.38
3gms_A	340	Putative NADPH:quinone reductase; structural genom	91.16
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	90.93
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	90.78
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	90.75
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	90.71
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	90.64
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	90.59
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	90.56
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	90.55
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	90.38
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	90.26
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	90.21
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	90.17
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	90.16
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	90.16
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	90.07
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	89.89
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	89.84
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	89.82
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	89.77
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	89.74
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	89.34
4eye_A	342	Probable oxidoreductase; structural genomics, niai	89.32
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	89.03
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	88.98
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	88.96
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	88.89
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	88.79
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	88.63
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	88.54
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	88.45
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	88.01
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	88.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	87.67
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	87.65
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	87.54
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	87.37
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	87.28
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	86.77
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	86.6
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	86.3
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	86.3
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	86.21
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	85.88
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	85.7
3c85_A	183	Putative glutathione-regulated potassium-efflux S	85.63
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	85.59
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	85.39
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	85.19
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	84.92
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	84.8
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	84.76
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	84.14
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	83.35
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	83.03
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	82.97
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	82.29
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	82.19
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	82.16
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	82.16
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	82.03
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	81.89
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	81.82
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	81.24
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	81.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	80.56

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.97  E-value=4.6e-31  Score=238.92  Aligned_cols=242  Identities=41%  Similarity=0.761  Sum_probs=195.5

Q ss_pred             cccccccCCCCCCCcccCHHHHHHHhhcCCccchhhhhhHHHhhhhccccccccccccccCcccccccChhhhHHHHHHH
Q 018970           66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQML  145 (348)
Q Consensus        66 ~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~~~~~~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  145 (348)
                      |..+...|.|++|+.|.+.+++|++.+......  ....||....+||+.....+++.++++........    .+...+
T Consensus        12 ~~~~~~~g~d~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~~~   85 (254)
T 1xtp_A           12 SRNLPISGRDTNGKTYRSTDEMWKAELTGDLYD--PEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDI----EGSRNF   85 (254)
T ss_dssp             -CCCCCCEEETTSCEESCHHHHHHHHSCSCTTC--TTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHH----HHHHHH
T ss_pred             cccccccccCCCCcccccHHHHHHHHHhccccc--cchhhhhhhhhHHhcCCccccceecCcCccCHHHH----HHHHHH
Confidence            566778999999999999999999987764322  22368999999999988877777776544332222    233333


Q ss_pred             HhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC
Q 018970          146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT  225 (348)
Q Consensus       146 l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  225 (348)
                      +.. +.   ..++.+|||||||+|.++..++..+...|+++|+|+.|++.|++++..        ..++.+.+.|+.+++
T Consensus        86 l~~-l~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~  153 (254)
T 1xtp_A           86 IAS-LP---GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETAT  153 (254)
T ss_dssp             HHT-ST---TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCGGGCC
T ss_pred             HHh-hc---ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEccHHHCC
Confidence            332 22   456789999999999999999888766799999999999999999865        256899999999888


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC-CCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR-SGFVLDKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      .++++||+|++..+++|++++++..+++++.++|||||.+++.++... ..+..+.....+.++.+++.++++++||+++
T Consensus       154 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  233 (254)
T 1xtp_A          154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV  233 (254)
T ss_dssp             CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred             CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEE
Confidence            777899999999999999877899999999999999999999986432 2334444556667899999999999999999


Q ss_pred             EEeecCCCCccceEEEEEEEe
Q 018970          305 KSKDQKGLPEELFAVKMYALT  325 (348)
Q Consensus       305 ~~~~~~~~~~~l~~v~~~~l~  325 (348)
                      .......+|..++++.+|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~  254 (254)
T 1xtp_A          234 KEAFQEEWPTDLFPLKMYALK  254 (254)
T ss_dssp             EEEECTTCCTTSCCEEEEEEC
T ss_pred             EeeecCCCCchhheEEEEEeC
Confidence            999999999999999999985

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.95  E-value=6.3e-28  Score=217.30  Aligned_cols=216  Identities=41%  Similarity=0.819  Sum_probs=174.2

Q ss_pred             hhhhHHHhhhhccccccccccccccCcccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCC
Q 018970          101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF  180 (348)
Q Consensus       101 ~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~  180 (348)
                      ....||+...+||+.....+++++++|..+...+......++..++.....   ..++.+|||||||+|.++..++..+.
T Consensus        26 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~  102 (241)
T 2ex4_A           26 DEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN---KTGTSCALDCGAGIGRITKRLLLPLF  102 (241)
T ss_dssp             CHHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTC
T ss_pred             ccchhHHHHHHHHhcCCccccccccCCCCcchhhHHhHHHHHHHHHHhccc---CCCCCEEEEECCCCCHHHHHHHHhcC
Confidence            356788889999999888887777776654444444455555555433211   33578999999999999999887776


Q ss_pred             CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCC
Q 018970          181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK  260 (348)
Q Consensus       181 ~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lk  260 (348)
                      ..|+++|+|+.|++.|++++...+      ..++.+.+.|+.+++.++++||+|++..+++|+++++...+++++.++||
T Consensus       103 ~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk  176 (241)
T 2ex4_A          103 REVDMVDITEDFLVQAKTYLGEEG------KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLR  176 (241)
T ss_dssp             SEEEEEESCHHHHHHHHHHTGGGG------GGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE
T ss_pred             CEEEEEeCCHHHHHHHHHHhhhcC------CceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcC
Confidence            589999999999999999876521      23688999999888877679999999999999997667899999999999


Q ss_pred             CCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCccceEEEEEEEe
Q 018970          261 PGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALT  325 (348)
Q Consensus       261 pgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~~l~~v~~~~l~  325 (348)
                      |||.+++.++.......++.....+.++.+++.++++++||+++.......+|..++|+.+|+|+
T Consensus       177 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~v~~~~l~  241 (241)
T 2ex4_A          177 PNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR  241 (241)
T ss_dssp             EEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCCTTSCEEEEEEEC
T ss_pred             CCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecCCCcchhhhhhhheeC
Confidence            99999998876554444555566666799999999999999999999999999999999999985

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.88  E-value=2e-21  Score=169.72  Aligned_cols=142  Identities=17%  Similarity=0.222  Sum_probs=120.7

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ  237 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~  237 (348)
                      +.+|||||||+|.++..++..+. .|+++|+|+.|++.++++.           .++.+.+.|+.+++.++++||+|++.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v~~~  109 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH-----------PSVTFHHGTITDLSDSPKRWAGLLAW  109 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC-----------TTSEEECCCGGGGGGSCCCEEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC-----------CCCeEEeCcccccccCCCCeEEEEeh
Confidence            57999999999999999998866 5999999999999999884           35889999999888777899999999


Q ss_pred             hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC-CCCceecCHHHHHHHHHhcCCeEEEEeecCC
Q 018970          238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK-EDRSITRSDFYFKELFSRCGLHIYKSKDQKG  311 (348)
Q Consensus       238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~-~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~  311 (348)
                      .+++|++.+++..+++++.++|||||.+++..........+.. ......++.+++.++++++||+++.......
T Consensus       110 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  184 (203)
T 3h2b_A          110 YSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR  184 (203)
T ss_dssp             SSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred             hhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence            9999998778999999999999999999998765443322222 2233447999999999999999999887765

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.87  E-value=2.3e-21  Score=176.99  Aligned_cols=148  Identities=14%  Similarity=0.198  Sum_probs=118.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC---cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~---~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  231 (348)
                      ++++.+|||||||+|.++..++.....   +|+|+|+|+.|++.|++++...+.     ..++++.++|+.+++.+  .|
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~-----~~~v~~~~~D~~~~~~~--~~  140 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIAIE--NA  140 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCTTTCCCC--SE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc-----CceEEEeeccccccccc--cc
Confidence            467889999999999999999876432   699999999999999999866443     45799999999998764  69


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce-----------------ecCCC----------Cc
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV-----------------LDKED----------RS  284 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~-----------------~d~~~----------~~  284 (348)
                      |+|+++.++||+++++...+|++++++|||||.|++.+........                 +....          ..
T Consensus       141 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~  220 (261)
T 4gek_A          141 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVM  220 (261)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHC
T ss_pred             ccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccc
Confidence            9999999999999888889999999999999999998755432110                 00000          01


Q ss_pred             eecCHHHHHHHHHhcCCeEEEEeec
Q 018970          285 ITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       285 ~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      ..++.+++.++|+++||+.++...+
T Consensus       221 ~~~s~~~~~~~L~~AGF~~ve~~fq  245 (261)
T 4gek_A          221 LTDSVETHKARLHKAGFEHSELWFQ  245 (261)
T ss_dssp             CCBCHHHHHHHHHHHTCSEEEEEEE
T ss_pred             cCCCHHHHHHHHHHcCCCeEEEEEE
Confidence            2257888999999999998886544

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.86  E-value=4.3e-21  Score=168.80  Aligned_cols=158  Identities=17%  Similarity=0.250  Sum_probs=123.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++..+. .|+++|+|+.+++.+++++            ++.+...|+.+++ .+++||+|
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------------~~~~~~~d~~~~~-~~~~fD~v  106 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL------------GRPVRTMLFHQLD-AIDAYDAV  106 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH------------TSCCEECCGGGCC-CCSCEEEE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc------------CCceEEeeeccCC-CCCcEEEE
Confidence            45678999999999999999997765 6999999999999999886            2567778888877 55899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcC-CeEEEEeecCCC-
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCG-LHIYKSKDQKGL-  312 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aG-f~~v~~~~~~~~-  312 (348)
                      ++..+++|++++++..+++++.++|||||.+++...................++.+++.++++++| |+++........ 
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~  186 (211)
T 3e23_A          107 WAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKG  186 (211)
T ss_dssp             EECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEEC
T ss_pred             EecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCC
Confidence            999999999988899999999999999999999865433222111122223369999999999999 999987654432 


Q ss_pred             CccceEEEEEEEee
Q 018970          313 PEELFAVKMYALTA  326 (348)
Q Consensus       313 ~~~l~~v~~~~l~~  326 (348)
                      +......++++++.
T Consensus       187 ~~~~~~~wl~~~~~  200 (211)
T 3e23_A          187 FDQELAQFLHVSVR  200 (211)
T ss_dssp             TTSCEEEEEEEEEE
T ss_pred             CCCCCceEEEEEEe
Confidence            22334556666653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.86  E-value=3.8e-21  Score=169.99  Aligned_cols=158  Identities=20%  Similarity=0.206  Sum_probs=121.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||||||+|.++..++..+. .|+++|+|+.|++.+++++.          .++++.++|+.+++.+ ++||+|+
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~----------~~~~~~~~d~~~~~~~-~~fD~v~  111 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP----------KEFSITEGDFLSFEVP-TSIDTIV  111 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC----------TTCCEESCCSSSCCCC-SCCSEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC----------CceEEEeCChhhcCCC-CCeEEEE
Confidence            4667999999999999999998755 69999999999999999874          2588999999998877 8999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee--------c--------CCCCceecCHHHHHHHHHhc
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL--------D--------KEDRSITRSDFYFKELFSRC  299 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~--------d--------~~~~~~~~s~~~l~~l~~~a  299 (348)
                      +..+++|+++.+...+++++.++|||||.+++.+.........        .        .....+.++.+++.++++++
T Consensus       112 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  191 (220)
T 3hnr_A          112 STYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENN  191 (220)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHT
T ss_pred             ECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHC
Confidence            9999999996555569999999999999999987543321100        0        00111224788999999999


Q ss_pred             CCeEEEEeecCCCCccceEEEEEEEeecCCCCccc
Q 018970          300 GLHIYKSKDQKGLPEELFAVKMYALTAEMPRRVSK  334 (348)
Q Consensus       300 Gf~~v~~~~~~~~~~~l~~v~~~~l~~~~~~~~~~  334 (348)
                      ||+++.....         -..|.+...++.++++
T Consensus       192 Gf~v~~~~~~---------~~~w~~~~~~~~~~~~  217 (220)
T 3hnr_A          192 GFHVTFTRLN---------HFVWVMEATKQLEHHH  217 (220)
T ss_dssp             TEEEEEEECS---------SSEEEEEEEECSCCC-
T ss_pred             CCEEEEeecc---------ceEEEEeehhhhhhhc
Confidence            9998876543         1244455455665544

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.85  E-value=1.2e-20  Score=168.55  Aligned_cols=146  Identities=17%  Similarity=0.268  Sum_probs=118.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+|||||||+|.++..++...+ ..|+++|+|+.|++.|++++...        .++.+.+.|+.+++.+ ++||+
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~~~~~-~~fD~  112 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN--------LKVKYIEADYSKYDFE-EKYDM  112 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC--------TTEEEEESCTTTCCCC-SCEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC--------CCEEEEeCchhccCCC-CCceE
Confidence            45678999999999999999998863 37999999999999999998763        3799999999998877 89999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce--------------------------ecCCCCceec
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV--------------------------LDKEDRSITR  287 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~--------------------------~d~~~~~~~~  287 (348)
                      |++..+++|+++.+...+++++.++|||||.+++.+........                          .........+
T Consensus       113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (234)
T 3dtn_A          113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDI  192 (234)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCC
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhccccccc
Confidence            99999999999766668999999999999999998754332110                          0111222336


Q ss_pred             CHHHHHHHHHhcCCeEEEEeec
Q 018970          288 SDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       288 s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      +.+++.++++++||+.++....
T Consensus       193 ~~~~~~~ll~~aGF~~v~~~~~  214 (234)
T 3dtn_A          193 EMNQQLNWLKEAGFRDVSCIYK  214 (234)
T ss_dssp             BHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CHHHHHHHHHHcCCCceeeeee
Confidence            8899999999999999987654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.85  E-value=1e-20  Score=166.19  Aligned_cols=151  Identities=11%  Similarity=0.007  Sum_probs=114.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCC----C--cCCCcceeEEEcCCCCCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM----A--PDMHKATNFFCVPLQDFTPET  228 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~----~--~~~~~~i~~~~~d~~~~~~~~  228 (348)
                      +.++.+|||+|||+|..+..|++++. .|+|+|+|+.|++.|+++.......    +  .....++++.++|+.++++.+
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~   98 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   98 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence            45678999999999999999998877 5999999999999999886431000    0  000246899999999988654


Q ss_pred             -CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          229 -GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       229 -~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                       ++||+|++..+++|+++++...++++++++|||||.+++........   ......+.++.+++.+++++ ||+++...
T Consensus        99 ~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~---~~~~~~~~~~~~el~~~~~~-gf~i~~~~  174 (203)
T 1pjz_A           99 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA---LLEGPPFSVPQTWLHRVMSG-NWEVTKVG  174 (203)
T ss_dssp             HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS---SSSSCCCCCCHHHHHHTSCS-SEEEEEEE
T ss_pred             CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc---ccCCCCCCCCHHHHHHHhcC-CcEEEEec
Confidence             68999999999999998778889999999999999844443221111   11122234688999999998 99988766


Q ss_pred             ecC
Q 018970          308 DQK  310 (348)
Q Consensus       308 ~~~  310 (348)
                      ...
T Consensus       175 ~~~  177 (203)
T 1pjz_A          175 GQD  177 (203)
T ss_dssp             ESS
T ss_pred             ccc
Confidence            544

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.84  E-value=2e-20  Score=170.89  Aligned_cols=148  Identities=15%  Similarity=0.148  Sum_probs=120.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++.....+|+++|+|+.+++.+++++...++     ..++.+...|+.++++++++||+|
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v  133 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL-----ANRVTFSYADAMDLPFEDASFDAV  133 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCCSCTTCEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEECccccCCCCCCCccEE
Confidence            567889999999999999999877555799999999999999998765433     346999999999988777899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce------e----cCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV------L----DKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~------~----d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      ++..+++|++  +...+++++.++|||||.+++.+........      .    ........++.+++.++++++||+++
T Consensus       134 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  211 (273)
T 3bus_A          134 WALESLHHMP--DRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVT  211 (273)
T ss_dssp             EEESCTTTSS--CHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEE
T ss_pred             EEechhhhCC--CHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEE
Confidence            9999999998  6789999999999999999998754332210      0    00112234688999999999999998


Q ss_pred             EEeec
Q 018970          305 KSKDQ  309 (348)
Q Consensus       305 ~~~~~  309 (348)
                      .....
T Consensus       212 ~~~~~  216 (273)
T 3bus_A          212 STVDI  216 (273)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            86653

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.84  E-value=2.1e-20  Score=167.51  Aligned_cols=141  Identities=15%  Similarity=0.139  Sum_probs=116.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||||||+|.++..++..+. .|+++|+|+.+++.++++..         ..++++.+.|+.+++.++++||+|+
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~~~~~~fD~v~  121 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE---------GPDLSFIKGDLSSLPFENEQFEAIM  121 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC---------BTTEEEEECBTTBCSSCTTCEEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc---------cCCceEEEcchhcCCCCCCCccEEE
Confidence            4667999999999999999998766 69999999999999998753         3579999999999887778999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-------eecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-------VLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-------~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      +..+++|++  ++..+++++.++|+|||.+++.........       ..........++..++.++++++||++++...
T Consensus       122 ~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  199 (242)
T 3l8d_A          122 AINSLEWTE--EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIG  199 (242)
T ss_dssp             EESCTTSSS--CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             EcChHhhcc--CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeec
Confidence            999999998  778999999999999999999874332211       11222233346889999999999999998663

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.84  E-value=6.5e-20  Score=168.87  Aligned_cols=146  Identities=16%  Similarity=0.138  Sum_probs=117.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++......|+++|+|+.+++.|++++...++     ..++++...|+.+++   ++||+|
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~---~~fD~v  133 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----LRSKRVLLAGWEQFD---EPVDRI  133 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----CSCEEEEESCGGGCC---CCCSEE
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCCeEEEECChhhCC---CCeeEE
Confidence            567889999999999999999855444799999999999999998876443     357899999998775   789999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee-------------------c-CCCCceecCHHHHHH
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL-------------------D-KEDRSITRSDFYFKE  294 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~-------------------d-~~~~~~~~s~~~l~~  294 (348)
                      ++..+++|++++++..+++++.++|||||.+++.+.........                   . ........+.+++.+
T Consensus       134 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  213 (287)
T 1kpg_A          134 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQE  213 (287)
T ss_dssp             EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHH
T ss_pred             EEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHH
Confidence            99999999976688999999999999999999987543221100                   0 011122358899999


Q ss_pred             HHHhcCCeEEEEee
Q 018970          295 LFSRCGLHIYKSKD  308 (348)
Q Consensus       295 l~~~aGf~~v~~~~  308 (348)
                      +++++||+++....
T Consensus       214 ~l~~aGf~~~~~~~  227 (287)
T 1kpg_A          214 CASANGFTVTRVQS  227 (287)
T ss_dssp             HHHTTTCEEEEEEE
T ss_pred             HHHhCCcEEEEEEe
Confidence            99999999998764

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.84  E-value=2.1e-20  Score=168.97  Aligned_cols=146  Identities=15%  Similarity=0.225  Sum_probs=117.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++..+...|+++|+|+.|++.|+++...         .++.+.+.|+.+++.++++||+|
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~fD~v  112 (253)
T 3g5l_A           42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS---------PVVCYEQKAIEDIAIEPDAYNVV  112 (253)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCC---------TTEEEEECCGGGCCCCTTCEEEE
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhcc---------CCeEEEEcchhhCCCCCCCeEEE
Confidence            346789999999999999999988776799999999999999998752         46899999999988777899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC------CCceecC-------------------------CCC
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR------SGFVLDK-------------------------EDR  283 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~------~~~~~d~-------------------------~~~  283 (348)
                      ++..+++|++  ++..+++++.++|||||.+++......      ..+..+.                         ...
T Consensus       113 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (253)
T 3g5l_A          113 LSSLALHYIA--SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ  190 (253)
T ss_dssp             EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred             EEchhhhhhh--hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence            9999999997  788999999999999999999742210      0000000                         001


Q ss_pred             ceecCHHHHHHHHHhcCCeEEEEeecCC
Q 018970          284 SITRSDFYFKELFSRCGLHIYKSKDQKG  311 (348)
Q Consensus       284 ~~~~s~~~l~~l~~~aGf~~v~~~~~~~  311 (348)
                      .+.++.+++.++|+++||+++.......
T Consensus       191 ~~~~t~~~~~~~l~~aGF~~~~~~e~~~  218 (253)
T 3g5l_A          191 KYHRTVTTYIQTLLKNGFQINSVIEPEP  218 (253)
T ss_dssp             EECCCHHHHHHHHHHTTEEEEEEECCCC
T ss_pred             cEecCHHHHHHHHHHcCCeeeeeecCCC
Confidence            1224999999999999999998776543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.83  E-value=9.4e-20  Score=160.99  Aligned_cols=167  Identities=19%  Similarity=0.118  Sum_probs=122.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      .++.+|||||||+|.++..++..+. ..|+++|+|+.|++.|++++...++... ...++++.+.|+...+...++||+|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~v  106 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN-QWERLQLIQGALTYQDKRFHGYDAA  106 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHH-HHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcc-cCcceEEEeCCcccccccCCCcCEE
Confidence            4567999999999999999987765 3799999999999999999876443100 0126999999997776656799999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC-------ceecCCCCceecCHHHHH----HHHHhcCCeE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG-------FVLDKEDRSITRSDFYFK----ELFSRCGLHI  303 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~-------~~~d~~~~~~~~s~~~l~----~l~~~aGf~~  303 (348)
                      ++..+++|+++++...+++++.++|||||.+++..+.....       ..+....+.+.++.+++.    ++++++||++
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v  186 (217)
T 3jwh_A          107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNV  186 (217)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEE
T ss_pred             eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceE
Confidence            99999999997777999999999999999888776432100       011122333446888888    8999999998


Q ss_pred             EEEeecCCCCccceEEEEEE
Q 018970          304 YKSKDQKGLPEELFAVKMYA  323 (348)
Q Consensus       304 v~~~~~~~~~~~l~~v~~~~  323 (348)
                      .........+..-+|..|+.
T Consensus       187 ~~~~~g~~~~~~g~~~q~~~  206 (217)
T 3jwh_A          187 QFQPIGEADPEVGSPTQMAV  206 (217)
T ss_dssp             EECCCSCCCSSSCCSEEEEE
T ss_pred             EEEecCCccCCCCchheeEe
Confidence            77544444444344555543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.83  E-value=4.5e-20  Score=170.78  Aligned_cols=147  Identities=20%  Similarity=0.272  Sum_probs=118.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++.....+|+++|+|+.|++.|++++...++     ..++++..+|+.++++++++||+|
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v  154 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSFLEIPCEDNSYDFI  154 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCTTSCSSCTTCEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEEcCcccCCCCCCCEeEE
Confidence            567789999999999999999877333799999999999999988754433     356999999999998877899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce-------ecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV-------LDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~-------~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      ++..+++|++  ++..+++++.++|||||.+++.+........       +.........+...+.++++++||+++...
T Consensus       155 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  232 (297)
T 2o57_A          155 WSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF  232 (297)
T ss_dssp             EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             EecchhhhcC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence            9999999999  6889999999999999999998754332211       000011123488899999999999999876


Q ss_pred             e
Q 018970          308 D  308 (348)
Q Consensus       308 ~  308 (348)
                      .
T Consensus       233 ~  233 (297)
T 2o57_A          233 S  233 (297)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.83  E-value=4.2e-20  Score=165.54  Aligned_cols=139  Identities=21%  Similarity=0.215  Sum_probs=112.9

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||||||+|.++..++..+. +|+++|+|+.|++.|++++..          ++++.+.|+.++. ++++||+|+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~----------~v~~~~~d~~~~~-~~~~fD~v~  108 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD----------GITYIHSRFEDAQ-LPRRYDNIV  108 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS----------CEEEEESCGGGCC-CSSCEEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC----------CeEEEEccHHHcC-cCCcccEEE
Confidence            3567899999999999999987776 599999999999999998642          5899999998874 458999999


Q ss_pred             echhhhcCChhhHHHHHHHHH-HcCCCCcEEEEEecccCCC---------ceec---------CCCCceecCHHHHHHHH
Q 018970          236 VQWCIGHLTDDDFVSFFKRAK-VGLKPGGFFVLKENIARSG---------FVLD---------KEDRSITRSDFYFKELF  296 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~-~~LkpgG~lii~~~~~~~~---------~~~d---------~~~~~~~~s~~~l~~l~  296 (348)
                      +..+++|++  ++..+++++. ++|||||.+++........         +...         ...+...++.+++.+++
T Consensus       109 ~~~~l~~~~--~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (250)
T 2p7i_A          109 LTHVLEHID--DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDA  186 (250)
T ss_dssp             EESCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHH
T ss_pred             EhhHHHhhc--CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHH
Confidence            999999998  7789999999 9999999999987443211         0000         11222346899999999


Q ss_pred             HhcCCeEEEEee
Q 018970          297 SRCGLHIYKSKD  308 (348)
Q Consensus       297 ~~aGf~~v~~~~  308 (348)
                      +++||+++....
T Consensus       187 ~~~Gf~~~~~~~  198 (250)
T 2p7i_A          187 SRAGLQVTYRSG  198 (250)
T ss_dssp             HHTTCEEEEEEE
T ss_pred             HHCCCeEEEEee
Confidence            999999998654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.82  E-value=7.6e-20  Score=165.82  Aligned_cols=147  Identities=18%  Similarity=0.227  Sum_probs=120.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++.....+|+++|+|+.|++.|+++...        ..++++.+.|+.+++.++++||+|
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~v  124 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG--------NNKIIFEANDILTKEFPENNFDLI  124 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS--------CTTEEEEECCTTTCCCCTTCEEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc--------CCCeEEEECccccCCCCCCcEEEE
Confidence            567889999999999999999987444799999999999999998765        257999999999988777899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC-------CCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK-------EDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~-------~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      ++..+++|++++++..+++++.++|||||.+++.+...........       ..+...++.+++.++++++||+++...
T Consensus       125 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  204 (266)
T 3ujc_A          125 YSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSK  204 (266)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             eHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence            9999999997678999999999999999999998754432110000       011223588999999999999998866


Q ss_pred             ec
Q 018970          308 DQ  309 (348)
Q Consensus       308 ~~  309 (348)
                      ..
T Consensus       205 ~~  206 (266)
T 3ujc_A          205 DL  206 (266)
T ss_dssp             EC
T ss_pred             eC
Confidence            43

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.82  E-value=1.8e-19  Score=167.42  Aligned_cols=147  Identities=14%  Similarity=0.079  Sum_probs=118.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++......|+++|+|+.|++.|++++...++     ..++++...|+.++   +++||+|
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~---~~~fD~v  141 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----PRRKEVRIQGWEEF---DEPVDRI  141 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC-----SSCEEEEECCGGGC---CCCCSEE
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECCHHHc---CCCccEE
Confidence            577889999999999999999988345799999999999999999876543     34799999999887   4799999


Q ss_pred             eechhhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceec--------------------CCCCceec
Q 018970          235 WVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD--------------------KEDRSITR  287 (348)
Q Consensus       235 i~~~~l~~~~~-------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d--------------------~~~~~~~~  287 (348)
                      ++..+++|+++       ++...+++++.++|||||.+++.+..........                    ........
T Consensus       142 ~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  221 (302)
T 3hem_A          142 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLP  221 (302)
T ss_dssp             EEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCC
T ss_pred             EEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCC
Confidence            99999999943       4678999999999999999999875443221000                    01222346


Q ss_pred             CHHHHHHHHHhcCCeEEEEeec
Q 018970          288 SDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       288 s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      +.+++.++++++||+++.....
T Consensus       222 s~~~~~~~l~~aGf~~~~~~~~  243 (302)
T 3hem_A          222 RISQVDYYSSNAGWKVERYHRI  243 (302)
T ss_dssp             CHHHHHHHHHHHTCEEEEEEEC
T ss_pred             CHHHHHHHHHhCCcEEEEEEeC
Confidence            8899999999999999887653

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.82  E-value=3.3e-19  Score=161.90  Aligned_cols=165  Identities=13%  Similarity=0.085  Sum_probs=121.9

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCC-------CCCCc----CCCcceeEEEcCCCCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE-------NHMAP----DMHKATNFFCVPLQDF  224 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~-------~~~~~----~~~~~i~~~~~d~~~~  224 (348)
                      .++.+|||+|||+|..+..|++.++ .|+|+|+|+.|++.|+++....       ...+.    ....+++|.++|+.++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            4667999999999999999998887 5999999999999998776310       00000    0125799999999998


Q ss_pred             CCCC-CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeE
Q 018970          225 TPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHI  303 (348)
Q Consensus       225 ~~~~-~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~  303 (348)
                      +..+ ++||+|++..+++|+++++...+++++.++|||||.|++.........   .....+..+.+++.++|.. +|++
T Consensus       146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~---~~g~~~~~~~~el~~~l~~-~f~v  221 (252)
T 2gb4_A          146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK---HAGPPFYVPSAELKRLFGT-KCSM  221 (252)
T ss_dssp             GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS---CCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred             CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc---CCCCCCCCCHHHHHHHhhC-CeEE
Confidence            8653 799999999999999987888999999999999999975432211111   1122234688999999987 5998


Q ss_pred             EEEeecCCCC-------ccceEEEEEEEe
Q 018970          304 YKSKDQKGLP-------EELFAVKMYALT  325 (348)
Q Consensus       304 v~~~~~~~~~-------~~l~~v~~~~l~  325 (348)
                      +.......+.       -..+...+|.|+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  250 (252)
T 2gb4_A          222 QCLEEVDALEERHKAWGLDYLFEKLYLLT  250 (252)
T ss_dssp             EEEEEEECCCGGGTTTTCSCCEEEEEEEE
T ss_pred             EEEeccccchhhhhhcCcchhhheeEEEe
Confidence            8865443322       234566777665

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.82  E-value=1.1e-19  Score=165.07  Aligned_cols=145  Identities=15%  Similarity=0.183  Sum_probs=116.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++..+. .|+++|+|+.|++.|++++...++      .++.+.++|+.++++++++||+|
T Consensus        35 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~l~~~~~~fD~V  107 (260)
T 1vl5_A           35 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDAEQMPFTDERFHIV  107 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC-CCCSCTTCEEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCC------CceEEEEecHHhCCCCCCCEEEE
Confidence            45678999999999999999987765 699999999999999998755432      36899999999998877899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce----------ecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV----------LDKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~----------~d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      +++.+++|++  ++..+++++.++|||||.|++.+........          .........++.+++.++++++||+++
T Consensus       108 ~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  185 (260)
T 1vl5_A          108 TCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELE  185 (260)
T ss_dssp             EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEE
T ss_pred             EEhhhhHhcC--CHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEE
Confidence            9999999999  7789999999999999999998654322210          001112233688899999999999988


Q ss_pred             EEee
Q 018970          305 KSKD  308 (348)
Q Consensus       305 ~~~~  308 (348)
                      ....
T Consensus       186 ~~~~  189 (260)
T 1vl5_A          186 ELHC  189 (260)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7553

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.82  E-value=2.2e-19  Score=160.59  Aligned_cols=143  Identities=15%  Similarity=0.069  Sum_probs=117.9

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ  237 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~  237 (348)
                      +.+|||||||+|.++..++..+. .|+++|+|+.+++.|++++...+.     ..++++.++|+.+++.. ++||+|++.
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~-~~fD~v~~~  139 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPK-----AEYFSFVKEDVFTWRPT-ELFDLIFDY  139 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGG-----GGGEEEECCCTTTCCCS-SCEEEEEEE
T ss_pred             CCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCC-----CcceEEEECchhcCCCC-CCeeEEEEC
Confidence            45999999999999999876555 599999999999999999875322     35799999999998754 699999999


Q ss_pred             hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCC
Q 018970          238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKG  311 (348)
Q Consensus       238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~  311 (348)
                      .+++|+++++...+++++.++|||||.|++.+......    .....+.++.+++.++|+++||+++.......
T Consensus       140 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  209 (235)
T 3lcc_A          140 VFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDH----VGGPPYKVDVSTFEEVLVPIGFKAVSVEENPH  209 (235)
T ss_dssp             SSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC----CSCSSCCCCHHHHHHHHGGGTEEEEEEEECTT
T ss_pred             hhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc----CCCCCccCCHHHHHHHHHHcCCeEEEEEecCC
Confidence            99999998889999999999999999999976443211    11223447899999999999999998776543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.82  E-value=2.1e-19  Score=168.02  Aligned_cols=146  Identities=16%  Similarity=0.178  Sum_probs=117.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++......|+++|+|+.|++.|++++...++     ..++++...|+.+++   ++||+|
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~---~~fD~v  159 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----NRSRQVLLQGWEDFA---EPVDRI  159 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCGGGCC---CCCSEE
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChHHCC---CCcCEE
Confidence            567889999999999999999977333699999999999999999876543     356899999998775   789999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceec--------------------CCCCceecCHHHHHH
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD--------------------KEDRSITRSDFYFKE  294 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d--------------------~~~~~~~~s~~~l~~  294 (348)
                      ++..+++|++++++..+++++.++|||||.+++.+..........                    ........+.+++.+
T Consensus       160 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  239 (318)
T 2fk8_A          160 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVE  239 (318)
T ss_dssp             EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHH
T ss_pred             EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHH
Confidence            999999999877899999999999999999999875543321100                    011123358899999


Q ss_pred             HHHhcCCeEEEEee
Q 018970          295 LFSRCGLHIYKSKD  308 (348)
Q Consensus       295 l~~~aGf~~v~~~~  308 (348)
                      +++++||+++....
T Consensus       240 ~l~~aGf~~~~~~~  253 (318)
T 2fk8_A          240 HGEKAGFTVPEPLS  253 (318)
T ss_dssp             HHHHTTCBCCCCEE
T ss_pred             HHHhCCCEEEEEEe
Confidence            99999999887554

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.82  E-value=5.2e-19  Score=156.29  Aligned_cols=157  Identities=17%  Similarity=0.124  Sum_probs=118.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      .++.+|||||||+|.++..++..+. ..|+++|+|+.+++.|++++...++... ...++++.+.|+...+...++||+|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~V  106 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM-QRKRISLFQSSLVYRDKRFSGYDAA  106 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHH-HHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccc-cCcceEEEeCcccccccccCCCCEE
Confidence            4567999999999999999987765 3799999999999999999865432100 0127999999998777666899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-------eecCCCCceecCHHHHH----HHHHhcCCeE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-------VLDKEDRSITRSDFYFK----ELFSRCGLHI  303 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-------~~d~~~~~~~~s~~~l~----~l~~~aGf~~  303 (348)
                      ++..+++|+++++...+++++.++|||||.+++..+......       .+....+.+.++.+++.    ++++++||++
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v  186 (219)
T 3jwg_A          107 TVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSV  186 (219)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEE
T ss_pred             EEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEE
Confidence            999999999977778999999999999997777654322111       01112333446888887    8899999998


Q ss_pred             EEEeecCCCC
Q 018970          304 YKSKDQKGLP  313 (348)
Q Consensus       304 v~~~~~~~~~  313 (348)
                      .....-...+
T Consensus       187 ~~~~~g~~~~  196 (219)
T 3jwg_A          187 RFLQIGEIDD  196 (219)
T ss_dssp             EEEEESCCCT
T ss_pred             EEEecCCccc
Confidence            7765444433

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.82  E-value=6.6e-20  Score=164.58  Aligned_cols=144  Identities=10%  Similarity=0.054  Sum_probs=115.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--CCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD  232 (348)
                      ..++.+|||||||+|.++..++..+.. |+++|+|+.|++.++++              +.+...|+.++  ++++++||
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-v~gvD~s~~~~~~a~~~--------------~~~~~~d~~~~~~~~~~~~fD  103 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEGIE-SIGVDINEDMIKFCEGK--------------FNVVKSDAIEYLKSLPDKYLD  103 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHTCC-EEEECSCHHHHHHHHTT--------------SEEECSCHHHHHHTSCTTCBS
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCCCc-EEEEECCHHHHHHHHhh--------------cceeeccHHHHhhhcCCCCee
Confidence            456789999999999999999988764 99999999999998754              56777787764  55668999


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc----eecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF----VLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~----~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      +|++..+++|++++++..+++++.++|||||.+++.........    .+....+...++.+++.++++++||+++....
T Consensus       104 ~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~  183 (240)
T 3dli_A          104 GVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEF  183 (240)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred             EEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEE
Confidence            99999999999988889999999999999999999875543221    01112333446889999999999999998776


Q ss_pred             cCCCC
Q 018970          309 QKGLP  313 (348)
Q Consensus       309 ~~~~~  313 (348)
                      ...++
T Consensus       184 ~~~~~  188 (240)
T 3dli_A          184 FEECE  188 (240)
T ss_dssp             ECCCC
T ss_pred             eccCc
Confidence            65444

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.81  E-value=1.6e-19  Score=163.22  Aligned_cols=145  Identities=16%  Similarity=0.064  Sum_probs=117.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++.....+|+++|+|+.|++.|++++...++     ..++++.+.|+.++++ +++||+|
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~-~~~fD~V  107 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----SERVHFIHNDAAGYVA-NEKCDVA  107 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCCTTCCC-SSCEEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEECChHhCCc-CCCCCEE
Confidence            567789999999999999999977544799999999999999998765433     3479999999999877 6899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc----e---ecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF----V---LDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~----~---~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      ++..+++|++  ++..+++++.++|||||.+++.+.......    .   +........++.+++.++++++||+++...
T Consensus       108 ~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  185 (256)
T 1nkv_A          108 ACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMV  185 (256)
T ss_dssp             EEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred             EECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEEE
Confidence            9999999998  678999999999999999999875432211    0   011112233688999999999999987754

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.81  E-value=1.2e-19  Score=166.93  Aligned_cols=146  Identities=20%  Similarity=0.232  Sum_probs=116.9

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~Ii  235 (348)
                      ++.+|||||||+|.++..++..+. .|+++|+|+.|++.|++++...++     ..++++.++|+.+++ ..+++||+|+
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~fD~v~  141 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGV-----SDNMQFIHCAAQDVASHLETPVDLIL  141 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CC-----GGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEEcCHHHhhhhcCCCceEEE
Confidence            367999999999999999998755 699999999999999999876543     367999999999887 5568999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC-----------cee--------cCCCCceecCHHHHHHHH
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG-----------FVL--------DKEDRSITRSDFYFKELF  296 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~-----------~~~--------d~~~~~~~~s~~~l~~l~  296 (348)
                      +..+++|++  ++..+++++.++|||||.+++........           ...        ........++.+++.+++
T Consensus       142 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  219 (285)
T 4htf_A          142 FHAVLEWVA--DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWL  219 (285)
T ss_dssp             EESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHH
T ss_pred             ECchhhccc--CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHH
Confidence            999999998  77899999999999999999976322110           000        011222346899999999


Q ss_pred             HhcCCeEEEEeecC
Q 018970          297 SRCGLHIYKSKDQK  310 (348)
Q Consensus       297 ~~aGf~~v~~~~~~  310 (348)
                      +++||+++......
T Consensus       220 ~~aGf~v~~~~~~~  233 (285)
T 4htf_A          220 EEAGWQIMGKTGVR  233 (285)
T ss_dssp             HHTTCEEEEEEEES
T ss_pred             HHCCCceeeeeeEE
Confidence            99999999876654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.81  E-value=2.7e-19  Score=157.37  Aligned_cols=142  Identities=20%  Similarity=0.262  Sum_probs=112.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++..+. +|+++|+|+.|++.+++. .         ..++++.+.|+.++ .++++||+|
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~-~---------~~~~~~~~~d~~~~-~~~~~~D~v  111 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGRH-G---------LDNVEFRQQDLFDW-TPDRQWDAV  111 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGGG-C---------CTTEEEEECCTTSC-CCSSCEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHhc-C---------CCCeEEEecccccC-CCCCceeEE
Confidence            45667999999999999999998865 699999999999999872 1         25699999999988 556899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce---e-----------cCCCCce-----ecCHHHHHHH
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV---L-----------DKEDRSI-----TRSDFYFKEL  295 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~---~-----------d~~~~~~-----~~s~~~l~~l  295 (348)
                      ++..+++|+++++...+++++.++|||||.+++.+........   +           -.....+     .++.+++.++
T Consensus       112 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (218)
T 3ou2_A          112 FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTER  191 (218)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHH
T ss_pred             EEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHH
Confidence            9999999999766799999999999999999998754322110   0           0011111     2488999999


Q ss_pred             HHhcCCeEEEEee
Q 018970          296 FSRCGLHIYKSKD  308 (348)
Q Consensus       296 ~~~aGf~~v~~~~  308 (348)
                      ++++||++.....
T Consensus       192 l~~aGf~v~~~~~  204 (218)
T 3ou2_A          192 LTALGWSCSVDEV  204 (218)
T ss_dssp             HHHTTEEEEEEEE
T ss_pred             HHHCCCEEEeeec
Confidence            9999999655443

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.81  E-value=2.3e-19  Score=160.56  Aligned_cols=144  Identities=18%  Similarity=0.230  Sum_probs=116.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||||||+|.++..++..+...|+++|+|+.|++.|+++...         .++++.+.|+.+++.++++||+|+
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~fD~v~  112 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---------TGITYERADLDKLHLPQDSFDLAY  112 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---------SSEEEEECCGGGCCCCTTCEEEEE
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---------CCceEEEcChhhccCCCCCceEEE
Confidence            46779999999999999999987664799999999999999988753         358899999988877678999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC------CCce----------ecC--------------CCCce
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR------SGFV----------LDK--------------EDRSI  285 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~------~~~~----------~d~--------------~~~~~  285 (348)
                      +..+++|++  ++..+++++.++|||||.+++......      ..+.          ...              ....+
T Consensus       113 ~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (243)
T 3bkw_A          113 SSLALHYVE--DVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKH  190 (243)
T ss_dssp             EESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEE
T ss_pred             Eeccccccc--hHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEE
Confidence            999999998  788999999999999999999753210      0000          000              11223


Q ss_pred             ecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          286 TRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       286 ~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      .++.+++.++++++||+++......
T Consensus       191 ~~t~~~~~~~l~~aGF~~~~~~~~~  215 (243)
T 3bkw_A          191 HRTVGTTLNALIRSGFAIEHVEEFC  215 (243)
T ss_dssp             ECCHHHHHHHHHHTTCEEEEEEECC
T ss_pred             eccHHHHHHHHHHcCCEeeeeccCC
Confidence            3689999999999999999877654

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.81  E-value=2.6e-19  Score=157.96  Aligned_cols=146  Identities=13%  Similarity=0.153  Sum_probs=119.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      ..++.+|||+|||+|.++..++..+ + ..|+++|+|+.+++.+++++...++      .++.+...|+.+++.++++||
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD  108 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------KNVEVLKSEENKIPLPDNTVD  108 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECBTTBCSSCSSCEE
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEecccccCCCCCCCee
Confidence            4567899999999999999999876 2 2799999999999999998765332      368999999999887778999


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      +|++..+++|++  +...+++++.++|||||.+++.+.......  ........++.+++.++++++||+++......
T Consensus       109 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  182 (219)
T 3dh0_A          109 FIFMAFTFHELS--EPLKFLEELKRVAKPFAYLAIIDWKKEERD--KGPPPEEVYSEWEVGLILEDAGIRVGRVVEVG  182 (219)
T ss_dssp             EEEEESCGGGCS--SHHHHHHHHHHHEEEEEEEEEEEECSSCCS--SSCCGGGSCCHHHHHHHHHHTTCEEEEEEEET
T ss_pred             EEEeehhhhhcC--CHHHHHHHHHHHhCCCeEEEEEEecccccc--cCCchhcccCHHHHHHHHHHCCCEEEEEEeeC
Confidence            999999999998  788999999999999999999875543221  11122233688999999999999999876544

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.81  E-value=3.3e-20  Score=163.04  Aligned_cols=144  Identities=17%  Similarity=0.174  Sum_probs=115.3

Q ss_pred             CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeech
Q 018970          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW  238 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~  238 (348)
                      .+|||+|||+|.++..++......|+++|+|+.+++.|++++...++     ..++++.+.|+.+++.++++||+|++..
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~v~~~~  119 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL-----NDRIQIVQGDVHNIPIEDNYADLIVSRG  119 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECBTTBCSSCTTCEEEEEEES
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc-----cCceEEEEcCHHHCCCCcccccEEEECc
Confidence            39999999999999999987333799999999999999998765433     3479999999999887778999999999


Q ss_pred             hhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce-------ecCC--------CCceecCHHHHHHHHHhcCCeE
Q 018970          239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV-------LDKE--------DRSITRSDFYFKELFSRCGLHI  303 (348)
Q Consensus       239 ~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~-------~d~~--------~~~~~~s~~~l~~l~~~aGf~~  303 (348)
                      +++|++  ++..+++++.++|||||.+++.+........       ....        .....++.+++.++++++||++
T Consensus       120 ~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  197 (219)
T 3dlc_A          120 SVFFWE--DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISS  197 (219)
T ss_dssp             CGGGCS--CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSS
T ss_pred             hHhhcc--CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCe
Confidence            999997  7889999999999999999998754332110       0000        1111247789999999999998


Q ss_pred             EEEeec
Q 018970          304 YKSKDQ  309 (348)
Q Consensus       304 v~~~~~  309 (348)
                      ++....
T Consensus       198 v~~~~~  203 (219)
T 3dlc_A          198 YEIILG  203 (219)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            887644

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.80  E-value=1.7e-19  Score=163.08  Aligned_cols=145  Identities=15%  Similarity=0.101  Sum_probs=117.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++..+...|+++|+|+.+++.|++++...++     ..++++.+.|+.+++.++++||+|
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v  118 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC-----ADRVKGITGSMDNLPFQNEELDLI  118 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCSSCTTCEEEE
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECChhhCCCCCCCEEEE
Confidence            566789999999999999999988766799999999999999998876544     345999999999988777899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-------eecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-------VLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-------~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      ++..+++|+.   +..+++++.++|||||.+++.+.......       .+.. ......+.+++.++++++||+++...
T Consensus       119 ~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~~v~~~  194 (257)
T 3f4k_A          119 WSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMD-AYPEISVIPTCIDKMERAGYTPTAHF  194 (257)
T ss_dssp             EEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHH-HCTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             EecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHH-hCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence            9999999983   67899999999999999999874321111       0000 00113578899999999999998865


Q ss_pred             e
Q 018970          308 D  308 (348)
Q Consensus       308 ~  308 (348)
                      .
T Consensus       195 ~  195 (257)
T 3f4k_A          195 I  195 (257)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.80  E-value=2.3e-19  Score=161.11  Aligned_cols=145  Identities=17%  Similarity=0.176  Sum_probs=118.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++..+. .|+++|+|+.|++.+++++...++      .++.+...|+.++++++++||+|
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~v   91 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGTAESLPFPDDSFDII   91 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECBTTBCCSCTTCEEEE
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCC------CCeEEEecccccCCCCCCcEEEE
Confidence            56788999999999999999987765 699999999999999988754322      36899999999988777899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee----------cCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL----------DKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~----------d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      ++..+++|++  ++..+++++.++|||||.+++.+.........          ....+...++.+++.++++++||+++
T Consensus        92 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~  169 (239)
T 1xxl_A           92 TCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQ  169 (239)
T ss_dssp             EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEE
T ss_pred             EECCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEE
Confidence            9999999998  78899999999999999999987554322100          01122233688999999999999988


Q ss_pred             EEee
Q 018970          305 KSKD  308 (348)
Q Consensus       305 ~~~~  308 (348)
                      ....
T Consensus       170 ~~~~  173 (239)
T 1xxl_A          170 DIQK  173 (239)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7554

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.80  E-value=7.7e-19  Score=159.64  Aligned_cols=141  Identities=20%  Similarity=0.275  Sum_probs=112.0

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||||||+|.++..++..+. .|+++|+|+.|++.|++++.           ++.+.+.|+.+++. +++||+|+
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~~-~~~fD~v~  115 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP-----------DAVLHHGDMRDFSL-GRRFSAVT  115 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTTCCC-SCCEEEEE
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----------CCEEEECChHHCCc-cCCcCEEE
Confidence            3567999999999999999987765 59999999999999999863           48899999999877 58999999


Q ss_pred             ech-hhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCCc------------------------------------e
Q 018970          236 VQW-CIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGF------------------------------------V  277 (348)
Q Consensus       236 ~~~-~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~------------------------------------~  277 (348)
                      +.. +++|+++ ++...+++++.++|||||.|++........+                                    .
T Consensus       116 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (263)
T 3pfg_A          116 CMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYL  195 (263)
T ss_dssp             ECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEE
Confidence            998 9999975 6788999999999999999999642211100                                    0


Q ss_pred             ecCCCC----------ceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          278 LDKEDR----------SITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       278 ~d~~~~----------~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      ......          ...++.+++.++|+++||+++.....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~  237 (263)
T 3pfg_A          196 VAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGG  237 (263)
T ss_dssp             EEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESST
T ss_pred             EecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCC
Confidence            000000          11258999999999999999987543

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.80  E-value=1.7e-19  Score=165.07  Aligned_cols=159  Identities=21%  Similarity=0.239  Sum_probs=121.7

Q ss_pred             HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEE
Q 018970          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF  217 (348)
Q Consensus       139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~  217 (348)
                      ...+..++.....   ..++.+|||||||+|.++..++..++. .|+++|+|+.+++.|++++...+.      .++.+.
T Consensus        22 ~~~l~~~l~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~   92 (276)
T 3mgg_A           22 AETLEKLLHHDTV---YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI------KNVKFL   92 (276)
T ss_dssp             -CHHHHHHHTTCC---CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEE
T ss_pred             HHHHHHHHhhccc---CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEE
Confidence            3445555544333   567889999999999999999988643 799999999999999998765432      369999


Q ss_pred             EcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC----------------C
Q 018970          218 CVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK----------------E  281 (348)
Q Consensus       218 ~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~----------------~  281 (348)
                      ..|+.+++.++++||+|+++.+++|++  ++..+++++.++|||||++++.+...........                .
T Consensus        93 ~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (276)
T 3mgg_A           93 QANIFSLPFEDSSFDHIFVCFVLEHLQ--SPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAY  170 (276)
T ss_dssp             ECCGGGCCSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHH
T ss_pred             EcccccCCCCCCCeeEEEEechhhhcC--CHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHh
Confidence            999999887778999999999999999  6779999999999999999998743321110000                0


Q ss_pred             CCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          282 DRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       282 ~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      .....++...+.++|+++||+++....
T Consensus       171 ~~~~~~~~~~l~~~l~~aGf~~v~~~~  197 (276)
T 3mgg_A          171 MKGNSLVGRQIYPLLQESGFEKIRVEP  197 (276)
T ss_dssp             TTCCTTGGGGHHHHHHHTTCEEEEEEE
T ss_pred             cCCCcchHHHHHHHHHHCCCCeEEEee
Confidence            011113456789999999999988664

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.80  E-value=8e-19  Score=156.00  Aligned_cols=153  Identities=17%  Similarity=0.166  Sum_probs=119.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+. .|+++|+|+.+++.+++++...++... ...++.+.+.|+.+++.++++||+|+
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~v~  106 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQK-TGGKAEFKVENASSLSFHDSSFDFAV  106 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSS-SSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccc-cCcceEEEEecccccCCCCCceeEEE
Confidence            4678999999999999999998855 699999999999999999876543211 12368999999999887778999999


Q ss_pred             echhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCC--------------------ceec-CC-----CCceecC
Q 018970          236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSG--------------------FVLD-KE-----DRSITRS  288 (348)
Q Consensus       236 ~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~--------------------~~~d-~~-----~~~~~~s  288 (348)
                      +..+++|+++ ++...+++++.++|||||.+++.+......                    +... ..     .....++
T Consensus       107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (235)
T 3sm3_A          107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT  186 (235)
T ss_dssp             EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred             EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence            9999999984 335589999999999999999986432110                    0000 00     0112369


Q ss_pred             HHHHHHHHHhcCCeEEEEeecC
Q 018970          289 DFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       289 ~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      .+++.++++++||+++......
T Consensus       187 ~~~l~~ll~~aGf~~~~~~~~~  208 (235)
T 3sm3_A          187 EKELVFLLTDCRFEIDYFRVKE  208 (235)
T ss_dssp             HHHHHHHHHTTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCEEEEEEecc
Confidence            9999999999999999976543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.80  E-value=1.7e-19  Score=164.38  Aligned_cols=147  Identities=16%  Similarity=0.113  Sum_probs=117.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++......|+++|+|+.+++.|++++...++     ..++++.+.|+.+++.++++||+|
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~i  118 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGL-----QNRVTGIVGSMDDLPFRNEELDLI  118 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCCCCTTCEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC-----CcCcEEEEcChhhCCCCCCCEEEE
Confidence            567889999999999999999977444899999999999999998866543     356999999999988777899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC------CCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK------EDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~------~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      ++..+++|+.   +..+++++.++|||||.+++.+...........      .......+.+.+.++++++||+++....
T Consensus       119 ~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  195 (267)
T 3kkz_A          119 WSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFI  195 (267)
T ss_dssp             EESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence            9999999983   678999999999999999998754221110000      0001225788999999999999998765


Q ss_pred             c
Q 018970          309 Q  309 (348)
Q Consensus       309 ~  309 (348)
                      .
T Consensus       196 ~  196 (267)
T 3kkz_A          196 L  196 (267)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.80  E-value=1.1e-18  Score=151.25  Aligned_cols=143  Identities=16%  Similarity=0.193  Sum_probs=115.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+. +|+++|+|+.+++.+++++...++      .++.+...|+.+++. +++||+|+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~-~~~~D~v~  102 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENL------DNLHTRVVDLNNLTF-DRQYDFIL  102 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECCGGGCCC-CCCEEEEE
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCC------CCcEEEEcchhhCCC-CCCceEEE
Confidence            3567999999999999999997755 699999999999999988754321      358999999988877 68999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      +..+++|+++++...+++++.++|||||.+++.+......+.. .....+.++.+++.++|++  |+++.....
T Consensus       103 ~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~--f~~~~~~~~  173 (199)
T 2xvm_A          103 STVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC-TVGFPFAFKEGELRRYYEG--WERVKYNED  173 (199)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC-CSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC-CCCCCCccCHHHHHHHhcC--CeEEEeccc
Confidence            9999999998889999999999999999988876544332211 1223345688899999987  999886654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.80  E-value=2.4e-19  Score=163.59  Aligned_cols=170  Identities=14%  Similarity=0.107  Sum_probs=119.0

Q ss_pred             HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCC-CC----------
Q 018970          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-MA----------  207 (348)
Q Consensus       139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~-~~----------  207 (348)
                      .+++...+.+.+.. +..++.+|||||||+|.++..++..++.+|+++|+|+.|++.|++++..... ..          
T Consensus        38 ~~~~~~~~~~~~~~-~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~  116 (263)
T 2a14_A           38 LKFNLECLHKTFGP-GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACE  116 (263)
T ss_dssp             HHHHHHHHHHHHST-TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHh
Confidence            34454445444321 2456789999999999888877767766799999999999999987644210 00          


Q ss_pred             ---c-C--------CCccee-EEEcCCCCC-CC---CCCceeEEeechhhhcCC-h-hhHHHHHHHHHHcCCCCcEEEEE
Q 018970          208 ---P-D--------MHKATN-FFCVPLQDF-TP---ETGRYDVIWVQWCIGHLT-D-DDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       208 ---~-~--------~~~~i~-~~~~d~~~~-~~---~~~~fD~Ii~~~~l~~~~-~-~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                         . .        ...++. +..+|+.+. +.   ..++||+|+++.++||+. + +++..++++++++|||||.|+++
T Consensus       117 ~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~  196 (263)
T 2a14_A          117 LEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT  196 (263)
T ss_dssp             HTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence               0 0        001233 888898874 22   246899999999999963 2 57889999999999999999998


Q ss_pred             ecccCCCceecCCC-CceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          269 ENIARSGFVLDKED-RSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       269 ~~~~~~~~~~d~~~-~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      .......+...... ..+.++.+++.++|+++||++++....
T Consensus       197 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~  238 (263)
T 2a14_A          197 VTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHS  238 (263)
T ss_dssp             EESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence            75443322211100 112358999999999999999987654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.79  E-value=6e-19  Score=164.74  Aligned_cols=147  Identities=13%  Similarity=0.052  Sum_probs=118.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++......|+++|+|+.|++.|++++...++     ..++++.++|+.++++++++||+|
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~V  189 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI-----DDHVRSRVCNMLDTPFDKGAVTAS  189 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCCCCTTCEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECChhcCCCCCCCEeEE
Confidence            567789999999999999999987334699999999999999998876543     357999999999988777899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce--------ecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV--------LDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~--------~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      ++..+++|++   +..+++++.++|||||.+++.+........        .+.......++.+++.++++++||+++..
T Consensus       190 ~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~  266 (312)
T 3vc1_A          190 WNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTI  266 (312)
T ss_dssp             EEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEE
T ss_pred             EECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEE
Confidence            9999999994   789999999999999999998754333210        00000012358899999999999999987


Q ss_pred             eec
Q 018970          307 KDQ  309 (348)
Q Consensus       307 ~~~  309 (348)
                      ...
T Consensus       267 ~~~  269 (312)
T 3vc1_A          267 VDL  269 (312)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.78  E-value=2.9e-18  Score=147.70  Aligned_cols=130  Identities=20%  Similarity=0.181  Sum_probs=111.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+. .|+++|+|+.+++.+++++.           ++.+...|+.+++.++++||+|+
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~-----------~~~~~~~d~~~~~~~~~~~D~i~  112 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP-----------EARWVVGDLSVDQISETDFDLIV  112 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTTSCCCCCCEEEEE
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC-----------CCcEEEcccccCCCCCCceeEEE
Confidence            4677999999999999999987755 69999999999999998863           37889999998877668999999


Q ss_pred             ec-hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          236 VQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       236 ~~-~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      +. .+++|+++++...+++++.++|+|||.+++......            .++.+.+.++++++||+++.....
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~------------~~~~~~~~~~l~~~Gf~~~~~~~~  175 (195)
T 3cgg_A          113 SAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR------------GWVFGDFLEVAERVGLELENAFES  175 (195)
T ss_dssp             ECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS------------SCCHHHHHHHHHHHTEEEEEEESS
T ss_pred             ECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC------------CcCHHHHHHHHHHcCCEEeeeecc
Confidence            98 789999877889999999999999999999753321            157788999999999999887654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.78  E-value=4.5e-18  Score=157.72  Aligned_cols=149  Identities=20%  Similarity=0.281  Sum_probs=114.8

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      ++.+|||||||+|.++..++..+. .|+++|+|+.|++.|++++...++   ....++++.+.|+.+++. +++||+|++
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~---~~~~~v~~~~~d~~~~~~-~~~fD~v~~  156 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPA---DVRDRCTLVQGDMSAFAL-DKRFGTVVI  156 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCH---HHHTTEEEEECBTTBCCC-SCCEEEEEE
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhccc---ccccceEEEeCchhcCCc-CCCcCEEEE
Confidence            345999999999999999998765 599999999999999998865321   001469999999999887 489998885


Q ss_pred             -chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC------------------------c----------eecCC
Q 018970          237 -QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG------------------------F----------VLDKE  281 (348)
Q Consensus       237 -~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~------------------------~----------~~d~~  281 (348)
                       ..+++|+++++...+++++.++|||||.|++........                        +          .....
T Consensus       157 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  236 (299)
T 3g2m_A          157 SSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPAD  236 (299)
T ss_dssp             CHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEEESC
T ss_pred             CCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEEecc
Confidence             577888887778999999999999999999975322110                        0          00000


Q ss_pred             ----------CCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          282 ----------DRSITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       282 ----------~~~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                                .....++.+++.++++++||+++......
T Consensus       237 ~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~  275 (299)
T 3g2m_A          237 ETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA  275 (299)
T ss_dssp             C--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             CCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence                      00112699999999999999999987654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.78  E-value=1.9e-18  Score=156.67  Aligned_cols=156  Identities=15%  Similarity=0.192  Sum_probs=115.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCC--------------Cc---------CCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM--------------AP---------DMH  211 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~--------------~~---------~~~  211 (348)
                      ..++.+|||||||+|.++..++..++..|+++|+|+.|++.+++++...+..              +.         ...
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            3566799999999999999888776646999999999999999988652100              00         000


Q ss_pred             cce-eEEEcCCCCCCC-CC---CceeEEeechhhhcCCh--hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCC-C
Q 018970          212 KAT-NFFCVPLQDFTP-ET---GRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKED-R  283 (348)
Q Consensus       212 ~~i-~~~~~d~~~~~~-~~---~~fD~Ii~~~~l~~~~~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~-~  283 (348)
                      .++ .+..+|+.+..+ ++   ++||+|++..+++|+..  +++..+++++.++|||||.|++.+......+...... .
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~  213 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS  213 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence            126 899999988653 44   78999999999996543  3788999999999999999999875443222111110 1


Q ss_pred             ceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          284 SITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       284 ~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      ...++.+++.++|+++||+++......
T Consensus       214 ~~~~~~~~~~~~l~~aGf~~~~~~~~~  240 (265)
T 2i62_A          214 SLPLGWETVRDAVEEAGYTIEQFEVIS  240 (265)
T ss_dssp             CCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             ccccCHHHHHHHHHHCCCEEEEEEEec
Confidence            123588899999999999999877544

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.77  E-value=4.8e-18  Score=162.15  Aligned_cols=149  Identities=15%  Similarity=0.177  Sum_probs=120.9

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--CCCCCceeE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV  233 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~  233 (348)
                      ...+|||||||+|.++..+++.++. +++++|+ +.+++.|++++...++     ..++++...|+.+.  +.+ ++||+
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~p-~~~D~  251 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSG-----SERIHGHGANLLDRDVPFP-TGFDA  251 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTT-----GGGEEEEECCCCSSSCCCC-CCCSE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCc-----ccceEEEEccccccCCCCC-CCcCE
Confidence            4579999999999999999987655 7999999 9999999999876543     45799999999886  344 78999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee---------------cCCCCceecCHHHHHHHHHh
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL---------------DKEDRSITRSDFYFKELFSR  298 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~---------------d~~~~~~~~s~~~l~~l~~~  298 (348)
                      |++..++|++++++...++++++++|||||.|++.+.........               ........++.++|.+++++
T Consensus       252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~  331 (363)
T 3dp7_A          252 VWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIEN  331 (363)
T ss_dssp             EEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHT
T ss_pred             EEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHH
Confidence            999999999998888899999999999999999998665432100               01122234689999999999


Q ss_pred             cCCeEEEEeecCCC
Q 018970          299 CGLHIYKSKDQKGL  312 (348)
Q Consensus       299 aGf~~v~~~~~~~~  312 (348)
                      +||+++......+.
T Consensus       332 AGf~~v~~~~~~g~  345 (363)
T 3dp7_A          332 AGLEVEEIQDNIGL  345 (363)
T ss_dssp             TTEEESCCCCCBTT
T ss_pred             cCCeEEEEEeCCCC
Confidence            99999887655543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.77  E-value=7.3e-18  Score=155.39  Aligned_cols=150  Identities=17%  Similarity=0.100  Sum_probs=117.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~  233 (348)
                      +.++.+|||||||+|.++..++..+...|+++|+|+.|++.|++++...+.     ..++.+.++|+.+++. .+++||+
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~fD~  136 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----RFKVFFRAQDSYGRHMDLGKEFDV  136 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEEEESCTTTSCCCCSSCEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CccEEEEECCccccccCCCCCcCE
Confidence            356789999999999999998877665799999999999999998866432     2468999999998876 4689999


Q ss_pred             Eeechhhhc--CChhhHHHHHHHHHHcCCCCcEEEEEecccCC-------------Cc--eec-----------------
Q 018970          234 IWVQWCIGH--LTDDDFVSFFKRAKVGLKPGGFFVLKENIARS-------------GF--VLD-----------------  279 (348)
Q Consensus       234 Ii~~~~l~~--~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~-------------~~--~~d-----------------  279 (348)
                      |++..++||  ...+++..+++++.++|||||.+++.......             .+  .++                 
T Consensus       137 v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l  216 (298)
T 1ri5_A          137 ISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTL  216 (298)
T ss_dssp             EEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEE
T ss_pred             EEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEE
Confidence            999999998  45568899999999999999999997633110             00  000                 


Q ss_pred             --CC--CCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          280 --KE--DRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       280 --~~--~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                        ..  .....++.+++.++++++||+++.....
T Consensus       217 ~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~  250 (298)
T 1ri5_A          217 LDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF  250 (298)
T ss_dssp             TTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred             chhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence              00  0012358899999999999999987654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.77  E-value=2.4e-18  Score=160.13  Aligned_cols=148  Identities=14%  Similarity=0.051  Sum_probs=116.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHH-HhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLL-IRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la-~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||||||+|.++..++ ...+ ..|+++|+|+.+++.|++++...++     ..++++.++|+.+++++ ++||
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~-~~fD  189 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL-----AGQITLHRQDAWKLDTR-EGYD  189 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEECCGGGCCCC-SCEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECchhcCCcc-CCeE
Confidence            4577899999999999999885 2332 2799999999999999999987544     34699999999998877 8999


Q ss_pred             EEeechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCCc------eecC-----------------CC-Cceec
Q 018970          233 VIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGF------VLDK-----------------ED-RSITR  287 (348)
Q Consensus       233 ~Ii~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~------~~d~-----------------~~-~~~~~  287 (348)
                      +|+++.+++|+++ .....+++++.++|||||.|++.+.......      ..+.                 .. ....+
T Consensus       190 ~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (305)
T 3ocj_A          190 LLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALR  269 (305)
T ss_dssp             EEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCC
T ss_pred             EEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccC
Confidence            9999999999974 3344689999999999999999874432111      0000                 00 11226


Q ss_pred             CHHHHHHHHHhcCCeEEEEee
Q 018970          288 SDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       288 s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      +.+++.++++++||+++....
T Consensus       270 ~~~~~~~~l~~aGF~~v~~~~  290 (305)
T 3ocj_A          270 THAQTRAQLEEAGFTDLRFED  290 (305)
T ss_dssp             CHHHHHHHHHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHCCCEEEEEEc
Confidence            899999999999999998875

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.77  E-value=2.1e-18  Score=150.31  Aligned_cols=141  Identities=19%  Similarity=0.150  Sum_probs=111.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++ +|||||||+|.++..++..+. .|+++|+|+.|++.|++++...       ..++.+.+.|+.+++.++++||+|+
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v~   99 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEK-------GVKITTVQSNLADFDIVADAWEGIV   99 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHH-------TCCEEEECCBTTTBSCCTTTCSEEE
T ss_pred             CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhc-------CCceEEEEcChhhcCCCcCCccEEE
Confidence            345 999999999999999987765 6999999999999999887542       2268899999998887678999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce--ecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV--LDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~--~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      ++  +.|++.++...+++++.++|||||.+++..........  .........++.+++.++|+  ||+++.....
T Consensus       100 ~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~  171 (202)
T 2kw5_A          100 SI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNL  171 (202)
T ss_dssp             EE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred             EE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEE
Confidence            95  45666678899999999999999999998755433211  01112234579999999999  9999885543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.77  E-value=2.4e-18  Score=150.53  Aligned_cols=148  Identities=14%  Similarity=0.108  Sum_probs=113.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++...       ..++.+.+.|+.+++.++++||+|
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v   93 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN-------NFKLNISKGDIRKLPFKDESMSFV   93 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH-------TCCCCEEECCTTSCCSCTTCEEEE
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-------CCceEEEECchhhCCCCCCceeEE
Confidence            3456899999999999854444343336999999999999999886532       245889999999988777899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-----e-----e---cCCCCc--eecCHHHHHHHHHhc
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-----V-----L---DKEDRS--ITRSDFYFKELFSRC  299 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-----~-----~---d~~~~~--~~~s~~~l~~l~~~a  299 (348)
                      ++..+++|++.++...+++++.++|||||.+++.+.......     .     +   ......  ..++.+++.++|.++
T Consensus        94 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  173 (209)
T 2p8j_A           94 YSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDM  173 (209)
T ss_dssp             EECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTS
T ss_pred             EEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhc
Confidence            999999999777899999999999999999999874432210     0     0   011111  236899999999999


Q ss_pred             CCeEEEEeec
Q 018970          300 GLHIYKSKDQ  309 (348)
Q Consensus       300 Gf~~v~~~~~  309 (348)
                      ||...+....
T Consensus       174 g~~~~~~~~~  183 (209)
T 2p8j_A          174 KVLFKEDRVV  183 (209)
T ss_dssp             EEEEEEEEEE
T ss_pred             Cceeeeeeee
Confidence            9987775433

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.76  E-value=2.6e-18  Score=154.40  Aligned_cols=143  Identities=15%  Similarity=0.012  Sum_probs=114.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC-----C
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-----G  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~  229 (348)
                      +.++.+|||||||+|.++..++..+. +|+++|+|+.|++.|++++..         .++++.+.|+.+++...     .
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~  123 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA---------ANISYRLLDGLVPEQAAQIHSEI  123 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC---------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc---------cCceEEECccccccccccccccc
Confidence            45678999999999999999998887 599999999999999998742         46899999998865321     2


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce------------------ecCCCCceecCHHH
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV------------------LDKEDRSITRSDFY  291 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~------------------~d~~~~~~~~s~~~  291 (348)
                      .||+|++..++||+++++...+++++.++|||||.+++.+.....+..                  +........++.++
T Consensus       124 ~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (245)
T 3ggd_A          124 GDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAED  203 (245)
T ss_dssp             CSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHH
T ss_pred             CccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHH
Confidence            489999999999999888999999999999999999998754332110                  01111122368899


Q ss_pred             HHHHHHhcCCeEEEEeec
Q 018970          292 FKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       292 l~~l~~~aGf~~v~~~~~  309 (348)
                      +.++|  +||+++.....
T Consensus       204 ~~~~~--aGf~~~~~~~~  219 (245)
T 3ggd_A          204 IELYF--PDFEILSQGEG  219 (245)
T ss_dssp             HHHHC--TTEEEEEEECC
T ss_pred             HHHHh--CCCEEEecccc
Confidence            99999  99999986543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.76  E-value=1.3e-18  Score=153.63  Aligned_cols=137  Identities=20%  Similarity=0.214  Sum_probs=105.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC---CCC-CCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPE-TGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~-~~~f  231 (348)
                      .++.+|||||||+|.++..++..+. +|+++|+|+.|++.++++.            ++.+...|+.++   +.. .++|
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------------~~~~~~~~~~~~~~~~~~~~~~f  117 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAG------------AGEVHLASYAQLAEAKVPVGKDY  117 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHTC------------SSCEEECCHHHHHTTCSCCCCCE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhc------------ccccchhhHHhhcccccccCCCc
Confidence            3458999999999999999987755 6999999999999999871            356677766655   322 3469


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc--------e---ecC------CCCceecCHHHHHH
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF--------V---LDK------EDRSITRSDFYFKE  294 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~--------~---~d~------~~~~~~~s~~~l~~  294 (348)
                      |+|++..+++ ..  ++..+++++.++|||||.+++.+.......        .   +..      ......++.+++.+
T Consensus       118 D~v~~~~~l~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (227)
T 3e8s_A          118 DLICANFALL-HQ--DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLN  194 (227)
T ss_dssp             EEEEEESCCC-SS--CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHH
T ss_pred             cEEEECchhh-hh--hHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHH
Confidence            9999999999 55  678999999999999999999875432111        0   000      01112359999999


Q ss_pred             HHHhcCCeEEEEee
Q 018970          295 LFSRCGLHIYKSKD  308 (348)
Q Consensus       295 l~~~aGf~~v~~~~  308 (348)
                      +++++||+++....
T Consensus       195 ~l~~aGf~~~~~~~  208 (227)
T 3e8s_A          195 ALDMAGLRLVSLQE  208 (227)
T ss_dssp             HHHHTTEEEEEEEC
T ss_pred             HHHHcCCeEEEEec
Confidence            99999999998776

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.76  E-value=8.4e-18  Score=154.71  Aligned_cols=141  Identities=17%  Similarity=0.165  Sum_probs=114.8

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      ++.+|||+|||+|.++..++..+. .|+++|+|+.+++.|++++...+       .++++.+.|+.+++. +++||+|++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~-~~~fD~i~~  190 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKEN-------LNISTALYDINAANI-QENYDFIVS  190 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCGGGCCC-CSCEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcC-------CceEEEEeccccccc-cCCccEEEE
Confidence            567999999999999999998866 69999999999999999876532       268999999998776 589999999


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      +.+++|+++++...+++++.++|+|||.+++.......... ......+.++.+++.+++..  |+++.....
T Consensus       191 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~  260 (286)
T 3m70_A          191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVP-CPLPFSFTFAENELKEYYKD--WEFLEYNEN  260 (286)
T ss_dssp             CSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC-CSSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred             ccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCC-CCCCccccCCHHHHHHHhcC--CEEEEEEcc
Confidence            99999999888999999999999999998887654433221 11233455788889999865  888876543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.76  E-value=7e-18  Score=150.52  Aligned_cols=102  Identities=19%  Similarity=0.268  Sum_probs=89.0

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|+++..           ++.+.+.|+.+++. +++||+|+
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~~-~~~~D~v~  105 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP-----------DATLHQGDMRDFRL-GRKFSAVV  105 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT-----------TCEEEECCTTTCCC-SSCEEEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC-----------CCEEEECCHHHccc-CCCCcEEE
Confidence            3567999999999999999998876 69999999999999998853           47899999998876 57899999


Q ss_pred             e-chhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          236 V-QWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       236 ~-~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      + ..+++|+.+ ++...+++++.++|||||.+++.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A          106 SMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             ECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             EcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            5 559999965 6788999999999999999999753

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.76  E-value=2.1e-18  Score=156.15  Aligned_cols=142  Identities=20%  Similarity=0.192  Sum_probs=111.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++..+. .|+++|+|+.|++.+++++...       ..++.+...|+.+++.++++||+|
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v  108 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGV-------DRKVQVVQADARAIPLPDESVHGV  108 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHTTTS-------CTTEEEEESCTTSCCSCTTCEEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcc-------CCceEEEEcccccCCCCCCCeeEE
Confidence            45678999999999999999987754 6999999999999999987221       357999999999988777899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC-CC---c------ee---cC--CCCceecCHHHHHHHHHhc
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR-SG---F------VL---DK--EDRSITRSDFYFKELFSRC  299 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~-~~---~------~~---d~--~~~~~~~s~~~l~~l~~~a  299 (348)
                      ++..++||++  +...+++++.++|||||.+++.-.... ..   +      ..   ..  ......++.+++.++++++
T Consensus       109 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  186 (263)
T 2yqz_A          109 IVVHLWHLVP--DWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL  186 (263)
T ss_dssp             EEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHT
T ss_pred             EECCchhhcC--CHHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHc
Confidence            9999999998  788999999999999999998721110 11   0      00   00  0112235778899999999


Q ss_pred             CCeEEEE
Q 018970          300 GLHIYKS  306 (348)
Q Consensus       300 Gf~~v~~  306 (348)
                      ||+++..
T Consensus       187 Gf~~~~~  193 (263)
T 2yqz_A          187 GLKPRTR  193 (263)
T ss_dssp             TCCCEEE
T ss_pred             CCCcceE
Confidence            9997664

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.76  E-value=1.1e-17  Score=149.62  Aligned_cols=144  Identities=19%  Similarity=0.301  Sum_probs=113.2

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      ++.+|||||||+|.++..++..+. +|+++|+|+.|++.+++++...       ..++.+.+.|+.+++.+ ++||+|++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~-~~fD~v~~  107 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQ-------GLKPRLACQDISNLNIN-RKFDLITC  107 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHT-------TCCCEEECCCGGGCCCS-CCEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhc-------CCCeEEEecccccCCcc-CCceEEEE
Confidence            667999999999999999987765 5999999999999999987543       12688999999888766 78999999


Q ss_pred             ch-hhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccC--------CCc---------eecC----------------C
Q 018970          237 QW-CIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIAR--------SGF---------VLDK----------------E  281 (348)
Q Consensus       237 ~~-~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~--------~~~---------~~d~----------------~  281 (348)
                      .. +++|+++ +++..+++++.++|||||.+++......        ..+         .+..                .
T Consensus       108 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (246)
T 1y8c_A          108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRD  187 (246)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEec
Confidence            98 9999953 5789999999999999999998532110        000         0000                0


Q ss_pred             C----------CceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          282 D----------RSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       282 ~----------~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      .          ....++.+++.++++++||++++....
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~  225 (246)
T 1y8c_A          188 GEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC  225 (246)
T ss_dssp             SSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred             CCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence            0          012259999999999999999987654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.76  E-value=4.1e-18  Score=157.26  Aligned_cols=154  Identities=14%  Similarity=0.171  Sum_probs=107.8

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCc--------C--CC--------------c
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP--------D--MH--------------K  212 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~--------~--~~--------------~  212 (348)
                      ++.+|||||||+|.++..++.....+|+++|+|+.|++.|++++........        .  .+              .
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            5679999999999965544433344799999999999999987654210000        0  00              0


Q ss_pred             ceeEEEcCCCC-CCC-----CCCceeEEeechhhhcCChh--hHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCC-C
Q 018970          213 ATNFFCVPLQD-FTP-----ETGRYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKED-R  283 (348)
Q Consensus       213 ~i~~~~~d~~~-~~~-----~~~~fD~Ii~~~~l~~~~~~--d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~-~  283 (348)
                      .+.+..+|+.+ +++     ++++||+|+++.+++|+..+  ++..+++++.++|||||.|++........+...... .
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~  230 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT  230 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeee
Confidence            14566778877 442     24679999999999996543  789999999999999999999864332222111111 1


Q ss_pred             ceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          284 SITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       284 ~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      ...++.+++.++|+++||+++......
T Consensus       231 ~~~~~~~~l~~~l~~aGf~~~~~~~~~  257 (289)
T 2g72_A          231 VVPVSEEEVREALVRSGYKVRDLRTYI  257 (289)
T ss_dssp             CCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eccCCHHHHHHHHHHcCCeEEEeeEee
Confidence            223689999999999999998866543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.75  E-value=6.8e-18  Score=143.05  Aligned_cols=135  Identities=17%  Similarity=0.111  Sum_probs=110.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||+|||+|.++..++..+. .|+++|+|+.+++.++++.           .++++...|   .+.++++||+|
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----------~~v~~~~~d---~~~~~~~~D~v   79 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKF-----------DSVITLSDP---KEIPDNSVDFI   79 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHC-----------TTSEEESSG---GGSCTTCEEEE
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhC-----------CCcEEEeCC---CCCCCCceEEE
Confidence            45678999999999999999987775 7999999999999999882           358888888   44556799999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      ++..+++|++  +...+++++.++|||||.+++.+.........  ......++.+++.++++  ||++++.....
T Consensus        80 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~  149 (170)
T 3i9f_A           80 LFANSFHDMD--DKQHVISEVKRILKDDGRVIIIDWRKENTGIG--PPLSIRMDEKDYMGWFS--NFVVEKRFNPT  149 (170)
T ss_dssp             EEESCSTTCS--CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS--SCGGGCCCHHHHHHHTT--TEEEEEEECSS
T ss_pred             EEccchhccc--CHHHHHHHHHHhcCCCCEEEEEEcCccccccC--chHhhhcCHHHHHHHHh--CcEEEEccCCC
Confidence            9999999998  78899999999999999999987554322111  11223368999999999  99999877654

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.75  E-value=3.9e-18  Score=157.11  Aligned_cols=144  Identities=16%  Similarity=0.184  Sum_probs=113.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      ..++.+|||||||+|.++..++...+  .+|+++|+|+.+++.|++++...       ..++.+.+.|+.+++.+ ++||
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~~v~~~~~d~~~~~~~-~~fD   91 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-------PYDSEFLEGDATEIELN-DKYD   91 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS-------SSEEEEEESCTTTCCCS-SCEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc-------CCceEEEEcchhhcCcC-CCee
Confidence            56778999999999999999987754  37999999999999999987653       34799999999998875 7999


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC---CCceecCC---------------------CCceecC
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR---SGFVLDKE---------------------DRSITRS  288 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~---~~~~~d~~---------------------~~~~~~s  288 (348)
                      +|++..+++|++  +...+++++.++|||||++++.+....   ..+..+..                     ......+
T Consensus        92 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (284)
T 3gu3_A           92 IAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI  169 (284)
T ss_dssp             EEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTG
T ss_pred             EEEECChhhcCC--CHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccH
Confidence            999999999998  778999999999999999999875510   00111100                     0011123


Q ss_pred             HHHHHHHHHhcCCeEEEEee
Q 018970          289 DFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       289 ~~~l~~l~~~aGf~~v~~~~  308 (348)
                      ...+.++++++||+.+....
T Consensus       170 ~~~l~~~l~~aGF~~v~~~~  189 (284)
T 3gu3_A          170 GMKIPIYLSELGVKNIECRV  189 (284)
T ss_dssp             GGTHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHHcCCCeEEEEE
Confidence            45689999999999887643

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.75  E-value=1.2e-18  Score=158.48  Aligned_cols=98  Identities=20%  Similarity=0.304  Sum_probs=85.7

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ..+.+|||||||+|.++..|+..+. +|+++|+|+.|++.|++            ..++.+.++|++++++++++||+|+
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~------------~~~v~~~~~~~e~~~~~~~sfD~v~  104 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALR------------HPRVTYAVAPAEDTGLPPASVDVAI  104 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCC------------CTTEEEEECCTTCCCCCSSCEEEEE
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhh------------cCCceeehhhhhhhcccCCcccEEE
Confidence            3456899999999999999987665 69999999999987642            2469999999999998889999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +..++||++   ...+++++.|+|||||.|++..
T Consensus       105 ~~~~~h~~~---~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          105 AAQAMHWFD---LDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             ECSCCTTCC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeeehhHhh---HHHHHHHHHHHcCCCCEEEEEE
Confidence            999998876   4589999999999999998864

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.75  E-value=7.9e-18  Score=147.70  Aligned_cols=126  Identities=19%  Similarity=0.208  Sum_probs=102.6

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      ++.+|||||||+|.++..+   +..+|+++|+|+.|++.++++.           .++.+.+.|+.+++.++++||+|++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v~~  101 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----------PEATWVRAWGEALPFPGESFDVVLL  101 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----------TTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEcccccCCCCCCcEEEEEE
Confidence            6789999999999999877   4436999999999999999886           2478899999998877789999999


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce-----e-cC----CCCceecCHHHHHHHHHhcC
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV-----L-DK----EDRSITRSDFYFKELFSRCG  300 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~-----~-d~----~~~~~~~s~~~l~~l~~~aG  300 (348)
                      ..+++|++  ++..+++++.++|||||.+++..........     . ..    ..+...++.+++.++++  |
T Consensus       102 ~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A          102 FTTLEFVE--DVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P  171 (211)
T ss_dssp             ESCTTTCS--CHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred             cChhhhcC--CHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence            99999998  7889999999999999999998755433210     0 00    11223369999999999  7

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.75  E-value=1.1e-17  Score=153.55  Aligned_cols=139  Identities=15%  Similarity=0.142  Sum_probs=111.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++..+. .|+++|+|+.|++.++++.           .++.+...|+.++++ +++||+|
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~-~~~fD~v  121 (279)
T 3ccf_A           55 PQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY-----------PHLHFDVADARNFRV-DKPLDAV  121 (279)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----------TTSCEEECCTTTCCC-SSCEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC-----------CCCEEEECChhhCCc-CCCcCEE
Confidence            35677999999999999999987444 6999999999999999875           247899999999886 4799999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-e--------------e-cCCCCceecCHHHHHHHHHh
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-V--------------L-DKEDRSITRSDFYFKELFSR  298 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-~--------------~-d~~~~~~~~s~~~l~~l~~~  298 (348)
                      ++..+++|++  ++..+++++.++|||||++++......... .              . ........++.+++.+++++
T Consensus       122 ~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (279)
T 3ccf_A          122 FSNAMLHWVK--EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEK  199 (279)
T ss_dssp             EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHH
T ss_pred             EEcchhhhCc--CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHH
Confidence            9999999998  788999999999999999999765432210 0              0 00111123588999999999


Q ss_pred             cCCeEEEEee
Q 018970          299 CGLHIYKSKD  308 (348)
Q Consensus       299 aGf~~v~~~~  308 (348)
                      +||+++....
T Consensus       200 aGf~~~~~~~  209 (279)
T 3ccf_A          200 QGFDVTYAAL  209 (279)
T ss_dssp             HTEEEEEEEE
T ss_pred             cCCEEEEEEE
Confidence            9999887553

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.75  E-value=7.2e-18  Score=150.84  Aligned_cols=144  Identities=17%  Similarity=0.233  Sum_probs=111.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..  ..|+++|+|+.|++.|++++...       ..++++.+.|+.+++.+ ++||+|+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~-~~fD~v~  101 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMET-------NRHVDFWVQDMRELELP-EPVDAIT  101 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHT-------TCCCEEEECCGGGCCCS-SCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhc-------CCceEEEEcChhhcCCC-CCcCEEE
Confidence            34579999999999999998866  56999999999999999987542       24688999999888765 7899999


Q ss_pred             ech-hhhcCC-hhhHHHHHHHHHHcCCCCcEEEEEecccC--------CC---------ce----ecC------------
Q 018970          236 VQW-CIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKENIAR--------SG---------FV----LDK------------  280 (348)
Q Consensus       236 ~~~-~l~~~~-~~d~~~~l~~~~~~LkpgG~lii~~~~~~--------~~---------~~----~d~------------  280 (348)
                      +.. +++|+. .++...+++++.++|||||.+++......        ..         +.    .+.            
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (243)
T 3d2l_A          102 ILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFF  181 (243)
T ss_dssp             ECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEE
T ss_pred             EeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEE
Confidence            986 999994 36788999999999999999998431110        00         00    000            


Q ss_pred             ---CCC----------ceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          281 ---EDR----------SITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       281 ---~~~----------~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                         ...          ...++.+++.++++++||+++.....
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~  223 (243)
T 3d2l_A          182 IEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGD  223 (243)
T ss_dssp             EECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEET
T ss_pred             EEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecC
Confidence               000          01269999999999999999987654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.75  E-value=6.4e-18  Score=156.28  Aligned_cols=160  Identities=14%  Similarity=0.192  Sum_probs=108.7

Q ss_pred             HHHHHHhhhcCCcc-CCCCCcEEEEeccccHHHHHH----HHhCCC-c--EEEEcCCHHHHHHHHHHhCCCCCCCcCCCc
Q 018970          141 FLQMLLSDRFPNAR-NNQHLVALDCGSGIGRITKNL----LIRYFN-E--VDLLEPVSHFLDAARESLAPENHMAPDMHK  212 (348)
Q Consensus       141 ~l~~~l~~~l~~~~-~~~~~~VLDvGcG~G~~~~~l----a~~~~~-~--v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~  212 (348)
                      ++...+...+.... ..++.+|||||||+|.++..+    +.+++. .  ++++|+|+.|++.|++++...+.     ..
T Consensus        35 ~~~~~l~~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~-----~~  109 (292)
T 2aot_A           35 FMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN-----LE  109 (292)
T ss_dssp             HHHHTHHHHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS-----CT
T ss_pred             HHHHhchhHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC-----CC
Confidence            34444444333222 356679999999999876543    333333 2  39999999999999998753210     12


Q ss_pred             ce--eEEEcCCCCCC------CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc------e-
Q 018970          213 AT--NFFCVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF------V-  277 (348)
Q Consensus       213 ~i--~~~~~d~~~~~------~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~------~-  277 (348)
                      ++  .+...++++++      +++++||+|++..++||++  |+..++++++++|||||++++........+      . 
T Consensus       110 ~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~  187 (292)
T 2aot_A          110 NVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYG  187 (292)
T ss_dssp             TEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHG
T ss_pred             cceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeecC--CHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHH
Confidence            33  34455554432      3457899999999999999  788999999999999999999864332211      0 


Q ss_pred             --ecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          278 --LDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       278 --~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                        .........++.+++.++|+++||+++...
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  219 (292)
T 2aot_A          188 SRFPQDDLCQYITSDDLTQMLDNLGLKYECYD  219 (292)
T ss_dssp             GGSCCCTTCCCCCHHHHHHHHHHHTCCEEEEE
T ss_pred             HhccCCCcccCCCHHHHHHHHHHCCCceEEEE
Confidence              011112233688999999999999987643

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.75  E-value=2.2e-18  Score=165.72  Aligned_cols=149  Identities=15%  Similarity=0.114  Sum_probs=114.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-C-CcEEEEcCCHHHHHHHHHHhCCC-----CCCCcCCCcceeEEEcCCCCC---
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPE-----NHMAPDMHKATNFFCVPLQDF---  224 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~-~~v~~vD~S~~~l~~a~~~~~~~-----~~~~~~~~~~i~~~~~d~~~~---  224 (348)
                      ..++.+|||||||+|.++..++... . ..|+++|+|+.|++.|++++...     |.   ....++.|...|+.++   
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~---~~~~~v~~~~~d~~~l~~~  157 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS---PSRSNVRFLKGFIENLATA  157 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSS---TTCCCEEEEESCTTCGGGC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccc---cCCCceEEEEccHHHhhhc
Confidence            4567899999999999999998764 2 27999999999999999876321     10   0024799999999987   


Q ss_pred             ---CCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce---e-----cCCCCceecCHHHHH
Q 018970          225 ---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV---L-----DKEDRSITRSDFYFK  293 (348)
Q Consensus       225 ---~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~---~-----d~~~~~~~~s~~~l~  293 (348)
                         ++++++||+|+++.+++|++  ++..+++++.++|||||+|++.+........   .     -.......++.+++.
T Consensus       158 ~~~~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (383)
T 4fsd_A          158 EPEGVPDSSVDIVISNCVCNLST--NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFR  235 (383)
T ss_dssp             BSCCCCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHH
T ss_pred             ccCCCCCCCEEEEEEccchhcCC--CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHH
Confidence               77778999999999999998  7889999999999999999998754332210   0     000111225678999


Q ss_pred             HHHHhcCCeEEEEee
Q 018970          294 ELFSRCGLHIYKSKD  308 (348)
Q Consensus       294 ~l~~~aGf~~v~~~~  308 (348)
                      ++++++||++++...
T Consensus       236 ~ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          236 RLVAEAGFRDVRLVS  250 (383)
T ss_dssp             HHHHHTTCCCEEEEE
T ss_pred             HHHHHCCCceEEEEe
Confidence            999999998776443

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.75  E-value=3e-17  Score=148.26  Aligned_cols=137  Identities=18%  Similarity=0.201  Sum_probs=108.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+|||||||+|.++..++...+ ..|+++|+|+.|++.++++.           .++.+...|+.+++ ++++||+
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~-~~~~fD~   98 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----------PNTNFGKADLATWK-PAQKADL   98 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----------TTSEEEECCTTTCC-CSSCEEE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------CCcEEEECChhhcC-ccCCcCE
Confidence            46678999999999999999988742 36999999999999999873           35889999999987 5689999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC--------------ce--ecC--CCCceecCHHHHHHH
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG--------------FV--LDK--EDRSITRSDFYFKEL  295 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~--------------~~--~d~--~~~~~~~s~~~l~~l  295 (348)
                      |+++.+++|++  ++..+++++.++|||||.+++........              +.  ...  ......++.+++.++
T Consensus        99 v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (259)
T 2p35_A           99 LYANAVFQWVP--DHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA  176 (259)
T ss_dssp             EEEESCGGGST--THHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred             EEEeCchhhCC--CHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence            99999999998  78899999999999999999986432111              00  000  011223688999999


Q ss_pred             HHhcCCeEEE
Q 018970          296 FSRCGLHIYK  305 (348)
Q Consensus       296 ~~~aGf~~v~  305 (348)
                      |+++||++..
T Consensus       177 l~~aGf~v~~  186 (259)
T 2p35_A          177 LSPKSSRVDV  186 (259)
T ss_dssp             HGGGEEEEEE
T ss_pred             HHhcCCceEE
Confidence            9999997543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.75  E-value=2.2e-18  Score=159.67  Aligned_cols=153  Identities=19%  Similarity=0.220  Sum_probs=110.0

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCC-----------------------------
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHM-----------------------------  206 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~-----------------------------  206 (348)
                      ++.+|||||||+|.++..++.... ..|+|+|+|+.|++.|++++...+..                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            567999999999999999998753 48999999999999999987653321                             


Q ss_pred             -----------------------CcCCCcceeEEEcCCCCCC-----CCCCceeEEeechhhhcC----ChhhHHHHHHH
Q 018970          207 -----------------------APDMHKATNFFCVPLQDFT-----PETGRYDVIWVQWCIGHL----TDDDFVSFFKR  254 (348)
Q Consensus       207 -----------------------~~~~~~~i~~~~~d~~~~~-----~~~~~fD~Ii~~~~l~~~----~~~d~~~~l~~  254 (348)
                                             ......+++|.++|+....     ...++||+|++..+++|+    .++++..++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                   0111257999999997654     345899999999999887    55678999999


Q ss_pred             HHHcCCCCcEEEEEecccCCC----c---eecCCCCceecCHHHHHHHHHh--cCCeEEEEeec
Q 018970          255 AKVGLKPGGFFVLKENIARSG----F---VLDKEDRSITRSDFYFKELFSR--CGLHIYKSKDQ  309 (348)
Q Consensus       255 ~~~~LkpgG~lii~~~~~~~~----~---~~d~~~~~~~~s~~~l~~l~~~--aGf~~v~~~~~  309 (348)
                      ++++|+|||+|++........    .   ........+.+..+++.++|.+  +||+.++....
T Consensus       206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~  269 (292)
T 3g07_A          206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT  269 (292)
T ss_dssp             HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred             HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence            999999999999964321100    0   0000011122456789999998  99988886654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.75  E-value=2e-17  Score=146.41  Aligned_cols=107  Identities=21%  Similarity=0.249  Sum_probs=92.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++...       ..++++.+.|+.+++.++++||+|+
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~D~v~  108 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSR-------ESNVEFIVGDARKLSFEDKTFDYVI  108 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCCEEEECCTTSCCSCTTCEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhc-------CCCceEEECchhcCCCCCCcEEEEE
Confidence            3467999999999999999987776 6999999999999999887542       2468999999998876668999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      ++.++++....+...+++++.++|||||.+++.+.
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          109 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            99996666666888999999999999999998753

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.75  E-value=3.3e-19  Score=160.23  Aligned_cols=141  Identities=15%  Similarity=0.064  Sum_probs=102.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--CCCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~  233 (348)
                      .++.+|||||||+|..+..+++..+.+|+++|+|+.|++.|+++....       ..++.+...|++++  ..++++||.
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~FD~  131 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDG  131 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhC-------CCceEEEeehHHhhcccccccCCce
Confidence            567899999999999999988766668999999999999999988764       34678888887654  245678999


Q ss_pred             Eee-----chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          234 IWV-----QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       234 Ii~-----~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      |+.     ...++|+.  +...+++++.|+|||||+|++.+....................+.+...|.++||++..
T Consensus       132 i~~D~~~~~~~~~~~~--~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~  206 (236)
T 3orh_A          132 ILYDTYPLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRREN  206 (236)
T ss_dssp             EEECCCCCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGG
T ss_pred             EEEeeeecccchhhhc--chhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEE
Confidence            874     56677777  78899999999999999998754221111111111111112334566778889998543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.74  E-value=1.6e-17  Score=146.90  Aligned_cols=134  Identities=18%  Similarity=0.150  Sum_probs=108.3

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ  237 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~  237 (348)
                      +.+|||||||+|.++..++..     +++|+|+.|++.++++             ++.+.+.|+.+++.++++||+|++.
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------------~~~~~~~d~~~~~~~~~~fD~v~~~  109 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFDFALMV  109 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------------CCEEEEcccccCCCCCCCeeEEEEc
Confidence            679999999999999987643     9999999999999875             2678889998888777899999999


Q ss_pred             hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc---e------ecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF---V------LDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~---~------~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      .+++|++  ++..+++++.++|+|||.+++.........   .      .........++.+++.++++++||+++....
T Consensus       110 ~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~  187 (219)
T 1vlm_A          110 TTICFVD--DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ  187 (219)
T ss_dssp             SCGGGSS--CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             chHhhcc--CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence            9999998  778999999999999999999875432221   0      0001122336899999999999999998766


Q ss_pred             cCC
Q 018970          309 QKG  311 (348)
Q Consensus       309 ~~~  311 (348)
                      ...
T Consensus       188 ~~~  190 (219)
T 1vlm_A          188 TLF  190 (219)
T ss_dssp             ECC
T ss_pred             ccC
Confidence            543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.74  E-value=2.6e-17  Score=144.94  Aligned_cols=135  Identities=13%  Similarity=0.157  Sum_probs=105.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++..+. .|+++|+|+.|++.|++++..        ..++++.+.|+.+++ ++++||+|
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~-~~~~fD~v  118 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKR--------WSHISWAATDILQFS-TAELFDLI  118 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTT--------CSSEEEEECCTTTCC-CSCCEEEE
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhccc--------CCCeEEEEcchhhCC-CCCCccEE
Confidence            45678999999999999999987765 699999999999999999876        247999999999988 45899999


Q ss_pred             eechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          235 WVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       235 i~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      +++.+++|+++ +++..+++++.++|||||.+++..........+.     .....+.+..++.+. +..++
T Consensus       119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~e  184 (216)
T 3ofk_A          119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWG-----HVAGAETVITILTEA-LTEVE  184 (216)
T ss_dssp             EEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTT-----CSCCHHHHHHHHHHH-SEEEE
T ss_pred             EEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhh-----hhhhHHHHHHHHHhh-ccceE
Confidence            99999999995 5567899999999999999999764322111011     123455666666553 44444

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.74  E-value=3.6e-18  Score=155.37  Aligned_cols=138  Identities=16%  Similarity=0.084  Sum_probs=107.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++..+. +|+++|+|+.|++.++++.            ++++...|+.+++.++++||+|
T Consensus        32 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------------~~~~~~~d~~~~~~~~~~fD~v   98 (261)
T 3ege_A           32 LPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP------------QVEWFTGYAENLALPDKSVDGV   98 (261)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT------------TEEEECCCTTSCCSCTTCBSEE
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc------------CCEEEECchhhCCCCCCCEeEE
Confidence            45778999999999999999987554 6999999999998765432            6899999999988877899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc---eecCC------CCceecCHHHHHHHHHhcCCeEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF---VLDKE------DRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~---~~d~~------~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      ++..+++|++  ++..+++++.++|| ||++++.+.......   .....      ......+.+.+. +++++||..+.
T Consensus        99 ~~~~~l~~~~--~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~  174 (261)
T 3ege_A           99 ISILAIHHFS--HLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVE  174 (261)
T ss_dssp             EEESCGGGCS--SHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEE
T ss_pred             EEcchHhhcc--CHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCcee
Confidence            9999999997  88899999999999 998888764322111   00000      011224567788 99999999887


Q ss_pred             Eeec
Q 018970          306 SKDQ  309 (348)
Q Consensus       306 ~~~~  309 (348)
                      ....
T Consensus       175 ~~~~  178 (261)
T 3ege_A          175 AIPF  178 (261)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.74  E-value=3.1e-17  Score=154.38  Aligned_cols=148  Identities=16%  Similarity=0.105  Sum_probs=117.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..+..+|||||||+|.++..+++..+. .++++|+ +.+++.|++++...++     ..+++|...|+.+ +.+ .+||+
T Consensus       167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~p-~~~D~  238 (332)
T 3i53_A          167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL-----SGRAQVVVGSFFD-PLP-AGAGG  238 (332)
T ss_dssp             CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTS-CCC-CSCSE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc-----CcCeEEecCCCCC-CCC-CCCcE
Confidence            455679999999999999999987765 7999999 9999999998765433     4579999999973 333 38999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC---ceecC----CCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG---FVLDK----EDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~---~~~d~----~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      |++.+++||+++++...++++++++|+|||+|++.+......   ...+.    ......++.++|.++++++||++++.
T Consensus       239 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~  318 (332)
T 3i53_A          239 YVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAA  318 (332)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             EEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence            999999999998778999999999999999999998765432   00000    01122368999999999999999987


Q ss_pred             eecC
Q 018970          307 KDQK  310 (348)
Q Consensus       307 ~~~~  310 (348)
                      ....
T Consensus       319 ~~~~  322 (332)
T 3i53_A          319 HPIS  322 (332)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            7543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.73  E-value=4.4e-17  Score=148.73  Aligned_cols=148  Identities=9%  Similarity=-0.066  Sum_probs=113.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-C-CcEEEEcCCHH------HHHHHHHHhCCCCCCCcCCCcceeEEEcC---CCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSH------FLDAARESLAPENHMAPDMHKATNFFCVP---LQD  223 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~-~~v~~vD~S~~------~l~~a~~~~~~~~~~~~~~~~~i~~~~~d---~~~  223 (348)
                      +.++.+|||||||+|.++..++..+ + ..|+++|+|+.      |++.|++++...++     ..++++...|   ...
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~  115 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL-----GDRLTVHFNTNLSDDL  115 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT-----GGGEEEECSCCTTTCC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC-----CCceEEEECChhhhcc
Confidence            5677899999999999999999874 4 37999999997      99999998866433     3578999998   334


Q ss_pred             CCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc----------e-------e--c-CCCC
Q 018970          224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF----------V-------L--D-KEDR  283 (348)
Q Consensus       224 ~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~----------~-------~--d-~~~~  283 (348)
                      +++++++||+|++..+++|++  +...+++.+.++++|||.+++.+.......          .       .  . ....
T Consensus       116 ~~~~~~~fD~v~~~~~l~~~~--~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (275)
T 3bkx_A          116 GPIADQHFDRVVLAHSLWYFA--SANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANI  193 (275)
T ss_dssp             GGGTTCCCSEEEEESCGGGSS--CHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSC
T ss_pred             CCCCCCCEEEEEEccchhhCC--CHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccc
Confidence            444568999999999999999  455688888888888999999875432210          0       0  0 1111


Q ss_pred             ceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          284 SITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       284 ~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      ...++.+.+.++++++||+++.....
T Consensus       194 ~~~~s~~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          194 RTLITPDTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             CCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred             cccCCHHHHHHHHHHCCCeeEEEEEe
Confidence            23468999999999999999886654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.73  E-value=2.3e-17  Score=148.73  Aligned_cols=117  Identities=21%  Similarity=0.317  Sum_probs=95.1

Q ss_pred             HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEE
Q 018970          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC  218 (348)
Q Consensus       139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~  218 (348)
                      ..++..++....    ..++.+|||+|||+|.++..++..+. .|+++|+|+.|++.|++++...       +.++.+.+
T Consensus        27 ~~~~~~~~~~~~----~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~-------~~~v~~~~   94 (252)
T 1wzn_A           27 IDFVEEIFKEDA----KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKER-------NLKIEFLQ   94 (252)
T ss_dssp             HHHHHHHHHHTC----SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCCEEEE
T ss_pred             HHHHHHHHHHhc----ccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhc-------CCceEEEE
Confidence            355555554321    34567999999999999999998766 5999999999999999987543       23688999


Q ss_pred             cCCCCCCCCCCceeEEeec-hhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          219 VPLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       219 ~d~~~~~~~~~~fD~Ii~~-~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      .|+.+++.+ ++||+|++. ..++|++.++...+++++.++|||||.+++.
T Consensus        95 ~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A           95 GDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             SCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            999887765 689999986 4667777678899999999999999999875

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.73  E-value=3.2e-18  Score=153.35  Aligned_cols=141  Identities=14%  Similarity=0.090  Sum_probs=101.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--CCCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~  233 (348)
                      .++.+|||||||+|.++..++..+...|+++|+|+.|++.|+++....       ..++.+.++|+.++  ++++++||+
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~fD~  131 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDG  131 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhc-------CCCeEEEecCHHHhhcccCCCceEE
Confidence            467899999999999999997655557999999999999999987653       34689999999887  666789999


Q ss_pred             Eee-chhh--hcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeE
Q 018970          234 IWV-QWCI--GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHI  303 (348)
Q Consensus       234 Ii~-~~~l--~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~  303 (348)
                      |++ .+.+  +.....+...+++++.++|||||+|++.+....................+.....+.++||..
T Consensus       132 V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  204 (236)
T 1zx0_A          132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR  204 (236)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred             EEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence            999 5543  232334566889999999999999998753311111101111111122344567788999984

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.73  E-value=2.1e-17  Score=155.37  Aligned_cols=148  Identities=14%  Similarity=0.126  Sum_probs=118.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      .++.+|||||||+|.++..++...+. +++++|+| .+++.|++++...++     ..++++...|+.+.+.+ +.||+|
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~-~~~D~v  236 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV-----ASRYHTIAGSAFEVDYG-NDYDLV  236 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC-----GGGEEEEESCTTTSCCC-SCEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC-----CcceEEEecccccCCCC-CCCcEE
Confidence            56789999999999999999988644 79999999 999999998754332     34699999999887655 359999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-------eecC-----CCCceecCHHHHHHHHHhcCCe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-------VLDK-----EDRSITRSDFYFKELFSRCGLH  302 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-------~~d~-----~~~~~~~s~~~l~~l~~~aGf~  302 (348)
                      ++.+++||+++++...+++++.++|+|||.+++.+.......       .++.     ......++.++|.++++++||+
T Consensus       237 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~  316 (335)
T 2r3s_A          237 LLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFS  316 (335)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCS
T ss_pred             EEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCC
Confidence            999999999887889999999999999999999886543211       0000     0123347899999999999999


Q ss_pred             EEEEeecC
Q 018970          303 IYKSKDQK  310 (348)
Q Consensus       303 ~v~~~~~~  310 (348)
                      +++.....
T Consensus       317 ~~~~~~~~  324 (335)
T 2r3s_A          317 HSQLHSLP  324 (335)
T ss_dssp             EEEEECCT
T ss_pred             eeeEEECC
Confidence            99876543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.73  E-value=1.1e-16  Score=140.19  Aligned_cols=107  Identities=16%  Similarity=0.190  Sum_probs=94.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..++..|+++|+|+.+++.++++...        ..++.+...|+.+++.++++||+|+
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--------~~~i~~~~~d~~~~~~~~~~fD~v~  112 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--------VPQLRWETMDVRKLDFPSASFDVVL  112 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--------CTTCEEEECCTTSCCSCSSCEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--------CCCcEEEEcchhcCCCCCCcccEEE
Confidence            46779999999999999999988775799999999999999998764        2468999999998877778999999


Q ss_pred             echhhhcCC-------------hhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          236 VQWCIGHLT-------------DDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       236 ~~~~l~~~~-------------~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +..+++++.             .++...+++++.++|||||.+++.+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            999998775             35678999999999999999999874

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.73  E-value=4.9e-18  Score=156.62  Aligned_cols=111  Identities=17%  Similarity=0.201  Sum_probs=91.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCCcee
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD  232 (348)
                      .++.+|||||||+|.++..++..+. +|+++|+|+.|++.|+++....+..  ....++.+...|+.+++   +.+++||
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~fD  132 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKE--PAFDKWVIEEANWLTLDKDVPAGDGFD  132 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTS--HHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccc--cccceeeEeecChhhCccccccCCCeE
Confidence            4567999999999999999998876 6999999999999998875221110  00245778888888766   5668999


Q ss_pred             EEeec-hhhhcCCh-----hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQ-WCIGHLTD-----DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~-~~l~~~~~-----~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++. .+++|+++     ++...++++++++|||||+|++..
T Consensus       133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            99998 89999995     558999999999999999999864

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.72  E-value=8.5e-17  Score=153.82  Aligned_cols=146  Identities=22%  Similarity=0.287  Sum_probs=117.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..+..+|||||||+|.++..+++.++. .++++|+ +.+++.|++++...++     ..+++|...|+.+ +.+ ..||+
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l-----~~~v~~~~~d~~~-~~p-~~~D~  271 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL-----ADRCEILPGDFFE-TIP-DGADV  271 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTT-CCC-SSCSE
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc-----CCceEEeccCCCC-CCC-CCceE
Confidence            456789999999999999999988665 7999999 9999999998765433     4579999999983 333 38999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-----eecC----CCCceecCHHHHHHHHHhcCCeEE
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-----VLDK----EDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-----~~d~----~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      |++.+++|++++++...++++++++|+|||+|++.+.......     ..+.    ......++.++|.++++++||+++
T Consensus       272 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  351 (369)
T 3gwz_A          272 YLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVE  351 (369)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEE
T ss_pred             EEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEE
Confidence            9999999999977777999999999999999999886644321     0000    011223789999999999999999


Q ss_pred             EEee
Q 018970          305 KSKD  308 (348)
Q Consensus       305 ~~~~  308 (348)
                      +...
T Consensus       352 ~~~~  355 (369)
T 3gwz_A          352 RSLP  355 (369)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9865

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.72  E-value=5.3e-17  Score=143.55  Aligned_cols=139  Identities=15%  Similarity=0.159  Sum_probs=109.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC--CCCCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~fD~  233 (348)
                      .++.+|||+|||+|.++..++..+ ..|+++|+|+.+++.++++.             .++...|+.+  .+.++++||+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~-------------~~~~~~d~~~~~~~~~~~~fD~   96 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL-------------DHVVLGDIETMDMPYEEEQFDC   96 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS-------------SEEEESCTTTCCCCSCTTCEEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC-------------CcEEEcchhhcCCCCCCCccCE
Confidence            466799999999999999998774 57999999999999998654             3578888876  4455679999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC----------Cceec-----CCCCceecCHHHHHHHHHh
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS----------GFVLD-----KEDRSITRSDFYFKELFSR  298 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~----------~~~~d-----~~~~~~~~s~~~l~~l~~~  298 (348)
                      |++..+++|++  +...+++++.++|+|||.+++.......          .+...     ...+...++.+++.+++++
T Consensus        97 v~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  174 (230)
T 3cc8_A           97 VIFGDVLEHLF--DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLK  174 (230)
T ss_dssp             EEEESCGGGSS--CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHH
T ss_pred             EEECChhhhcC--CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHH
Confidence            99999999998  6789999999999999999998644221          11110     0112233689999999999


Q ss_pred             cCCeEEEEeecC
Q 018970          299 CGLHIYKSKDQK  310 (348)
Q Consensus       299 aGf~~v~~~~~~  310 (348)
                      +||+++......
T Consensus       175 ~Gf~~~~~~~~~  186 (230)
T 3cc8_A          175 AGYSISKVDRVY  186 (230)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             cCCeEEEEEecc
Confidence            999998876543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.72  E-value=4e-17  Score=154.75  Aligned_cols=145  Identities=17%  Similarity=0.195  Sum_probs=117.0

Q ss_pred             CCC-CCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCc
Q 018970          155 NNQ-HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR  230 (348)
Q Consensus       155 ~~~-~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~  230 (348)
                      ..+ +.+|||||||+|.++..+++.++. .++++|+ +.+++.+++++...++     ..++++...|+.+.+  .+ +.
T Consensus       176 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~-~~  248 (352)
T 3mcz_A          176 VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDL-----GGRVEFFEKNLLDARNFEG-GA  248 (352)
T ss_dssp             GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC-----GGGEEEEECCTTCGGGGTT-CC
T ss_pred             CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCC-----CCceEEEeCCcccCcccCC-CC
Confidence            344 789999999999999999988765 7999999 8899999988765433     457999999998865  33 67


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-------eecC-----CCCceecCHHHHHHHHHh
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-------VLDK-----EDRSITRSDFYFKELFSR  298 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-------~~d~-----~~~~~~~s~~~l~~l~~~  298 (348)
                      ||+|++.+++||+++++...++++++++|+|||.|++.+.......       .++.     ......++.++|.+++++
T Consensus       249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~  328 (352)
T 3mcz_A          249 ADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRD  328 (352)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHH
T ss_pred             ccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHH
Confidence            9999999999999987889999999999999999999886543221       0010     112334789999999999


Q ss_pred             cCCeEEEE
Q 018970          299 CGLHIYKS  306 (348)
Q Consensus       299 aGf~~v~~  306 (348)
                      +||++++.
T Consensus       329 aGf~~~~~  336 (352)
T 3mcz_A          329 AGLAVGER  336 (352)
T ss_dssp             TTCEEEEE
T ss_pred             CCCceeee
Confidence            99999984

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.71  E-value=1.6e-16  Score=151.13  Aligned_cols=147  Identities=14%  Similarity=0.134  Sum_probs=116.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+|||||||+|.++..++...+. +++++|+ +.+++.|++++...++     ..++++...|+.+.+.+.  +|+
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~--~D~  259 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKESYPE--ADA  259 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC-----TTTEEEEECCTTTSCCCC--CSE
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC-----CCCEEEEeCccccCCCCC--CCE
Confidence            456789999999999999999988654 7999999 9999999998765433     345999999998876553  499


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc--e----------ecCC-CCceecCHHHHHHHHHhcC
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF--V----------LDKE-DRSITRSDFYFKELFSRCG  300 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~--~----------~d~~-~~~~~~s~~~l~~l~~~aG  300 (348)
                      |++..++||+++++...+++++.++|||||.+++.+.......  .          .... .....++.++|.++++++|
T Consensus       260 v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aG  339 (359)
T 1x19_A          260 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLG  339 (359)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHT
T ss_pred             EEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCC
Confidence            9999999999977799999999999999999999875543210  0          0000 0011278899999999999


Q ss_pred             CeEEEEeec
Q 018970          301 LHIYKSKDQ  309 (348)
Q Consensus       301 f~~v~~~~~  309 (348)
                      |++++....
T Consensus       340 f~~v~~~~~  348 (359)
T 1x19_A          340 YKDVTMVRK  348 (359)
T ss_dssp             CEEEEEEEE
T ss_pred             CceEEEEec
Confidence            999987654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.71  E-value=6.3e-18  Score=164.00  Aligned_cols=145  Identities=17%  Similarity=0.199  Sum_probs=108.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++..+. .|+++|+|+.|++.|+++...        .....+...+..+++.++++||+|
T Consensus       105 ~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~~~~~~l~~~~~~fD~I  175 (416)
T 4e2x_A          105 TGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIR--------VRTDFFEKATADDVRRTEGPANVI  175 (416)
T ss_dssp             CSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCC--------EECSCCSHHHHHHHHHHHCCEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCC--------cceeeechhhHhhcccCCCCEEEE
Confidence            56778999999999999999998766 699999999999999876211        011112223333344445799999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC-----CceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS-----GFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~-----~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      ++..+++|++  ++..++++++++|||||++++.......     .+......+...++.+.+.++++++||+++.....
T Consensus       176 ~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~  253 (416)
T 4e2x_A          176 YAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQRL  253 (416)
T ss_dssp             EEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEEc
Confidence            9999999999  8899999999999999999997643211     11111123444579999999999999999987765


Q ss_pred             C
Q 018970          310 K  310 (348)
Q Consensus       310 ~  310 (348)
                      .
T Consensus       254 ~  254 (416)
T 4e2x_A          254 P  254 (416)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.69  E-value=3.3e-17  Score=152.53  Aligned_cols=154  Identities=10%  Similarity=0.106  Sum_probs=106.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCC------CC--CCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ------DF--TPE  227 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~------~~--~~~  227 (348)
                      .++.+|||||||+|..+..++..+...|+|+|+|+.|++.|+++....+.....-..+++|.+.|+.      ++  +.+
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            3467999999999987766666665579999999999999999865421100000012567788772      22  134


Q ss_pred             CCceeEEeechhhhcC-ChhhHHHHHHHHHHcCCCCcEEEEEecccC--------------------CCc----------
Q 018970          228 TGRYDVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVLKENIAR--------------------SGF----------  276 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~-~~~d~~~~l~~~~~~LkpgG~lii~~~~~~--------------------~~~----------  276 (348)
                      +++||+|+|..++||+ ..++...++++++++|||||+|++......                    ..+          
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  206 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR  206 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence            5799999999999986 334678999999999999999998753110                    000          


Q ss_pred             --eecCC--CC---ceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          277 --VLDKE--DR---SITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       277 --~~d~~--~~---~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                        .+...  ..   .+..+.+++.++++++||++++....
T Consensus       207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f  246 (302)
T 2vdw_A          207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF  246 (302)
T ss_dssp             EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred             cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence              00011  01   12246788999999999999987543

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.68  E-value=3.9e-16  Score=149.08  Aligned_cols=148  Identities=18%  Similarity=0.210  Sum_probs=114.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+|||||||+|.++..++..++. .++++|+ +.+++.|++++...++     ..++++...|+.+ +.+ ..||+
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~~-~~~D~  251 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL-----ADRVTVAEGDFFK-PLP-VTADV  251 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTS-CCS-CCEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC-----CCceEEEeCCCCC-cCC-CCCCE
Confidence            456789999999999999999988754 7999999 9999999998765433     3479999999876 233 34999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec--ccCCCc--e----ecC----CCCceecCHHHHHHHHHhcCC
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN--IARSGF--V----LDK----EDRSITRSDFYFKELFSRCGL  301 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~--~~~~~~--~----~d~----~~~~~~~s~~~l~~l~~~aGf  301 (348)
                      |++..++||+++++...+++++.++|||||++++.+.  ......  .    .+.    ......++.++|.++++++||
T Consensus       252 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf  331 (374)
T 1qzz_A          252 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGL  331 (374)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTE
T ss_pred             EEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCC
Confidence            9999999999977677999999999999999999887  432110  0    000    001223689999999999999


Q ss_pred             eEEEEeecC
Q 018970          302 HIYKSKDQK  310 (348)
Q Consensus       302 ~~v~~~~~~  310 (348)
                      +++......
T Consensus       332 ~~~~~~~~~  340 (374)
T 1qzz_A          332 ALASERTSG  340 (374)
T ss_dssp             EEEEEEEEC
T ss_pred             ceEEEEECC
Confidence            999877653

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.68  E-value=6.5e-16  Score=146.43  Aligned_cols=143  Identities=15%  Similarity=0.172  Sum_probs=108.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+|||||||+|.++..+++.++. .++++|+ +.++.  +++....+     ...++++...|+.+ +.+  +||+
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~-----~~~~v~~~~~d~~~-~~p--~~D~  250 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPD-----VAGRWKVVEGDFLR-EVP--HADV  250 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGG-----GTTSEEEEECCTTT-CCC--CCSE
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccC-----CCCCeEEEecCCCC-CCC--CCcE
Confidence            456789999999999999999988766 7899998 44544  32222211     24579999999962 222  8999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc------eecC----CCCceecCHHHHHHHHHhcCCeE
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF------VLDK----EDRSITRSDFYFKELFSRCGLHI  303 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~------~~d~----~~~~~~~s~~~l~~l~~~aGf~~  303 (348)
                      |++..++||+++++...++++++++|||||.|++.+.......      ..+.    ......++.++|.++++++||++
T Consensus       251 v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~  330 (348)
T 3lst_A          251 HVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRL  330 (348)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEE
T ss_pred             EEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCce
Confidence            9999999999977778999999999999999999886543321      0000    12223468999999999999999


Q ss_pred             EEEee
Q 018970          304 YKSKD  308 (348)
Q Consensus       304 v~~~~  308 (348)
                      ++...
T Consensus       331 ~~~~~  335 (348)
T 3lst_A          331 DRVVG  335 (348)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99876

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.68  E-value=2.3e-16  Score=148.44  Aligned_cols=143  Identities=17%  Similarity=0.199  Sum_probs=114.0

Q ss_pred             CcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970          159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ  237 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~  237 (348)
                      .+|||||||+|.++..++...+. +++++|+ +.+++.|++++...++     ..++++...|+.+ +.+ ++||+|++.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~~-~~~D~v~~~  240 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA-----GERVSLVGGDMLQ-EVP-SNGDIYLLS  240 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH-----TTSEEEEESCTTT-CCC-SSCSEEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC-----CCcEEEecCCCCC-CCC-CCCCEEEEc
Confidence            79999999999999999988654 7999999 9999999988653221     2469999999977 444 679999999


Q ss_pred             hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc------eecCC----CCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF------VLDKE----DRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~------~~d~~----~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      .++||+++++...+++++.++|+|||++++.+.......      .++..    .....++.++|.++++++||+++...
T Consensus       241 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  320 (334)
T 2ip2_A          241 RIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIV  320 (334)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             hhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEE
Confidence            999999977778999999999999999999986543211      00100    01223689999999999999999876


Q ss_pred             ec
Q 018970          308 DQ  309 (348)
Q Consensus       308 ~~  309 (348)
                      ..
T Consensus       321 ~~  322 (334)
T 2ip2_A          321 DL  322 (334)
T ss_dssp             EE
T ss_pred             EC
Confidence            54

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.67  E-value=1.2e-16  Score=145.41  Aligned_cols=106  Identities=12%  Similarity=0.054  Sum_probs=84.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++.++. .|+++|+|+.|++.|++++...       .....+...+.......+++||+|
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~~~~~fD~V  114 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKELAGHFDFV  114 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGGGTTCCSEE
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccccccCCCccEE
Confidence            56778999999999999999998766 5999999999999999998652       112222222220001113689999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +++.+++|+..++...+++++.++| |||.++++.
T Consensus       115 v~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          115 LNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             EEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence            9999999999888899999999999 999999975

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.67  E-value=9.7e-16  Score=145.66  Aligned_cols=146  Identities=14%  Similarity=0.215  Sum_probs=116.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      .....+|||||||+|.++..++++++. .+++.|. |.+++.|++.+...+      ..++++..+|+.+.+.+  .+|+
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~------~~rv~~~~gD~~~~~~~--~~D~  247 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE------EEQIDFQEGDFFKDPLP--EADL  247 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--------CCSEEEEESCTTTSCCC--CCSE
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc------cCceeeecCccccCCCC--CceE
Confidence            445679999999999999999999887 6777886 889999999876432      35799999999765443  5899


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-------eecC----CCCceecCHHHHHHHHHhcCCe
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-------VLDK----EDRSITRSDFYFKELFSRCGLH  302 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-------~~d~----~~~~~~~s~~~l~~l~~~aGf~  302 (348)
                      |++.++||+++|++...+|++++++|+|||.++|.|.+.....       .+|.    ......+|.++|.++++++||+
T Consensus       248 ~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~  327 (353)
T 4a6d_A          248 YILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFR  327 (353)
T ss_dssp             EEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCE
T ss_pred             EEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCc
Confidence            9999999999988889999999999999999999986643211       0111    1122337999999999999999


Q ss_pred             EEEEeec
Q 018970          303 IYKSKDQ  309 (348)
Q Consensus       303 ~v~~~~~  309 (348)
                      .++....
T Consensus       328 ~v~v~~~  334 (353)
T 4a6d_A          328 DFQFKKT  334 (353)
T ss_dssp             EEEEECC
T ss_pred             eEEEEEc
Confidence            9987654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.67  E-value=4e-16  Score=143.18  Aligned_cols=139  Identities=16%  Similarity=0.133  Sum_probs=107.0

Q ss_pred             CCCcEEEEeccc---cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970          157 QHLVALDCGSGI---GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------  225 (348)
Q Consensus       157 ~~~~VLDvGcG~---G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------  225 (348)
                      ...+|||||||+   |.++..+....+. +|+++|+|+.|++.|++++..        ..++++.++|+.+..       
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--------~~~v~~~~~D~~~~~~~~~~~~  148 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--------DPNTAVFTADVRDPEYILNHPD  148 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--------CTTEEEEECCTTCHHHHHHSHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--------CCCeEEEEeeCCCchhhhccch
Confidence            346899999999   9887766555443 799999999999999998854        356999999997631       


Q ss_pred             ----CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-------eecC-CCCceecCHHHHH
Q 018970          226 ----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-------VLDK-EDRSITRSDFYFK  293 (348)
Q Consensus       226 ----~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-------~~d~-~~~~~~~s~~~l~  293 (348)
                          ++..+||+|++..++||+++++...++++++++|+|||+|++.+.......       .+.. ......++.+++.
T Consensus       149 ~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~  228 (274)
T 2qe6_A          149 VRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTPEEIE  228 (274)
T ss_dssp             HHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCHHHHH
T ss_pred             hhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCHHHHH
Confidence                222479999999999999977799999999999999999999886542110       0110 0112237999999


Q ss_pred             HHHHhcCCeEEE
Q 018970          294 ELFSRCGLHIYK  305 (348)
Q Consensus       294 ~l~~~aGf~~v~  305 (348)
                      ++|  .||++++
T Consensus       229 ~~l--~G~~l~~  238 (274)
T 2qe6_A          229 RQF--GDFELVE  238 (274)
T ss_dssp             HTT--TTCEECT
T ss_pred             HHh--CCCeEcc
Confidence            999  5999876

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.67  E-value=5.9e-16  Score=147.12  Aligned_cols=148  Identities=20%  Similarity=0.236  Sum_probs=116.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+|||||||+|.++..++..++. .++++|+ +.+++.|++++...++     ..++++...|+.+ +.+ ..||+
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~~-~~~D~  252 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL-----SDRVDVVEGDFFE-PLP-RKADA  252 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC-----TTTEEEEECCTTS-CCS-SCEEE
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC-----CCceEEEeCCCCC-CCC-CCccE
Confidence            456789999999999999999988755 7899999 9999999998765433     3479999999876 223 35999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc-cCCCc------eecCC----CCceecCHHHHHHHHHhcCCe
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI-ARSGF------VLDKE----DRSITRSDFYFKELFSRCGLH  302 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~-~~~~~------~~d~~----~~~~~~s~~~l~~l~~~aGf~  302 (348)
                      |++..++||+++++...+++++.++|||||.+++.+.. .....      ..+..    .....++.++|.++++++||+
T Consensus       253 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  332 (360)
T 1tw3_A          253 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV  332 (360)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred             EEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCe
Confidence            99999999999777789999999999999999999876 32110      00000    012236899999999999999


Q ss_pred             EEEEeecC
Q 018970          303 IYKSKDQK  310 (348)
Q Consensus       303 ~v~~~~~~  310 (348)
                      ++......
T Consensus       333 ~~~~~~~~  340 (360)
T 1tw3_A          333 VEEVRQLP  340 (360)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEeCC
Confidence            99876653

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.67  E-value=8.5e-16  Score=146.83  Aligned_cols=140  Identities=17%  Similarity=0.281  Sum_probs=111.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..+..+|||||||+|.++..+++.++. .++++|+ +.+++.+++            ..+++|...|+.+ +.+.+  |+
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~~p~~--D~  264 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA------------FSGVEHLGGDMFD-GVPKG--DA  264 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTT-CCCCC--SE
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh------------cCCCEEEecCCCC-CCCCC--CE
Confidence            456789999999999999999988766 7999999 888876542            2469999999987 44433  99


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce----------ecC-----CCCceecCHHHHHHHHHh
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV----------LDK-----EDRSITRSDFYFKELFSR  298 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~----------~d~-----~~~~~~~s~~~l~~l~~~  298 (348)
                      |++.+++||+++++...+|++++++|||||+|+|.+........          .+.     ......++.++|.+++++
T Consensus       265 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~  344 (368)
T 3reo_A          265 IFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMA  344 (368)
T ss_dssp             EEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHH
T ss_pred             EEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHH
Confidence            99999999999888889999999999999999999866432210          110     112334789999999999


Q ss_pred             cCCeEEEEeecC
Q 018970          299 CGLHIYKSKDQK  310 (348)
Q Consensus       299 aGf~~v~~~~~~  310 (348)
                      +||++++.....
T Consensus       345 AGF~~v~~~~~~  356 (368)
T 3reo_A          345 SGFRGFKVASCA  356 (368)
T ss_dssp             TTCCEEEEEEEE
T ss_pred             CCCeeeEEEEeC
Confidence            999999877654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.67  E-value=3.9e-16  Score=137.34  Aligned_cols=113  Identities=22%  Similarity=0.269  Sum_probs=94.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||||||+|.++..++    ..|+++|+|+.                     ++.+...|+.+++.++++||+|+
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------------~~~~~~~d~~~~~~~~~~fD~v~  120 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------------DPRVTVCDMAQVPLEDESVDVAV  120 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------------STTEEESCTTSCSCCTTCEEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------------CceEEEeccccCCCCCCCEeEEE
Confidence            456799999999999988763    36999999876                     25678899998887778999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      +..++|+ .  ++..+++++.++|+|||.+++.+....            ..+.+++.++++++||+++....
T Consensus       121 ~~~~l~~-~--~~~~~l~~~~~~L~~gG~l~i~~~~~~------------~~~~~~~~~~l~~~Gf~~~~~~~  178 (215)
T 2zfu_A          121 FCLSLMG-T--NIRDFLEEANRVLKPGGLLKVAEVSSR------------FEDVRTFLRAVTKLGFKIVSKDL  178 (215)
T ss_dssp             EESCCCS-S--CHHHHHHHHHHHEEEEEEEEEEECGGG------------CSCHHHHHHHHHHTTEEEEEEEC
T ss_pred             Eehhccc-c--CHHHHHHHHHHhCCCCeEEEEEEcCCC------------CCCHHHHHHHHHHCCCEEEEEec
Confidence            9999974 4  788999999999999999999874321            12788999999999999888554

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.67  E-value=5.6e-16  Score=135.40  Aligned_cols=128  Identities=13%  Similarity=0.066  Sum_probs=105.7

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+...|+++|+|+.|++.|++++...++      .++++...|+.+..  +++||+|+
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~--~~~fD~i~  130 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGI------YDIALQKTSLLADV--DGKFDLIV  130 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CCCEEEESSTTTTC--CSCEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEeccccccC--CCCceEEE
Confidence            46679999999999999998876555899999999999999998765432      23889999997754  47899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      ++.++++     +..+++++.++|+|||.+++.+...              .+.+.+.++++++||+++......
T Consensus       131 ~~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~~--------------~~~~~~~~~~~~~Gf~~~~~~~~~  186 (205)
T 3grz_A          131 ANILAEI-----LLDLIPQLDSHLNEDGQVIFSGIDY--------------LQLPKIEQALAENSFQIDLKMRAG  186 (205)
T ss_dssp             EESCHHH-----HHHHGGGSGGGEEEEEEEEEEEEEG--------------GGHHHHHHHHHHTTEEEEEEEEET
T ss_pred             ECCcHHH-----HHHHHHHHHHhcCCCCEEEEEecCc--------------ccHHHHHHHHHHcCCceEEeeccC
Confidence            9988875     5689999999999999999976332              246779999999999999876544

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.67  E-value=5.3e-16  Score=148.06  Aligned_cols=140  Identities=18%  Similarity=0.211  Sum_probs=111.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..+..+|||||||+|.++..++++++. .++++|+ +.+++.|++            ..+++|...|+.+ +.+.+  |+
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~-~~p~~--D~  262 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------------FPGVTHVGGDMFK-EVPSG--DT  262 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTT-CCCCC--SE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------------cCCeEEEeCCcCC-CCCCC--CE
Confidence            456689999999999999999988765 7999999 888876542            2469999999987 55533  99


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc----------eecC-----CCCceecCHHHHHHHHHh
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF----------VLDK-----EDRSITRSDFYFKELFSR  298 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~----------~~d~-----~~~~~~~s~~~l~~l~~~  298 (348)
                      |++.+++|++++++...+|++++++|||||+|+|.+.......          ..+.     ......++.++|.+++++
T Consensus       263 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~  342 (364)
T 3p9c_A          263 ILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARG  342 (364)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHH
T ss_pred             EEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHH
Confidence            9999999999988889999999999999999999986643321          0111     122234789999999999


Q ss_pred             cCCeEEEEeecC
Q 018970          299 CGLHIYKSKDQK  310 (348)
Q Consensus       299 aGf~~v~~~~~~  310 (348)
                      +||+.++.....
T Consensus       343 AGF~~v~~~~~~  354 (364)
T 3p9c_A          343 AGFTGVKSTYIY  354 (364)
T ss_dssp             TTCCEEEEEEEE
T ss_pred             CCCceEEEEEcC
Confidence            999999877654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.66  E-value=1.1e-15  Score=136.49  Aligned_cols=151  Identities=8%  Similarity=-0.025  Sum_probs=110.9

Q ss_pred             hcCCccCCCCCcEEEEeccccHHHHHHHHh-CCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--
Q 018970          149 RFPNARNNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--  224 (348)
Q Consensus       149 ~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--  224 (348)
                      -+.+..++++.+|||+|||+|.++..++.. ++. .|+++|+|+.|++.+++++.+        ..|+.....|..+.  
T Consensus        69 gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~--------~~ni~~V~~d~~~p~~  140 (233)
T 4df3_A           69 GLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD--------RRNIFPILGDARFPEK  140 (233)
T ss_dssp             TCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT--------CTTEEEEESCTTCGGG
T ss_pred             chhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh--------hcCeeEEEEeccCccc
Confidence            344456899999999999999999999876 343 799999999999999998876        35788888877653  


Q ss_pred             -CCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeE
Q 018970          225 -TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHI  303 (348)
Q Consensus       225 -~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~  303 (348)
                       +...+.+|+|++..  .|..  +...+++++.++|||||.++++......... .....    ......+.++++||++
T Consensus       141 ~~~~~~~vDvVf~d~--~~~~--~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~-~p~~~----~~~~ev~~L~~~GF~l  211 (233)
T 4df3_A          141 YRHLVEGVDGLYADV--AQPE--QAAIVVRNARFFLRDGGYMLMAIKARSIDVT-TEPSE----VYKREIKTLMDGGLEI  211 (233)
T ss_dssp             GTTTCCCEEEEEECC--CCTT--HHHHHHHHHHHHEEEEEEEEEEEECCHHHHH-TCCCH----HHHHHHHHHHHTTCCE
T ss_pred             cccccceEEEEEEec--cCCh--hHHHHHHHHHHhccCCCEEEEEEecccCCCC-CChHH----HHHHHHHHHHHCCCEE
Confidence             34457899998643  3333  6778999999999999999987532211000 00011    1133456788999999


Q ss_pred             EEEeecCCCCccc
Q 018970          304 YKSKDQKGLPEEL  316 (348)
Q Consensus       304 v~~~~~~~~~~~l  316 (348)
                      ++.....+|+.+.
T Consensus       212 ~e~i~L~pf~~~H  224 (233)
T 4df3_A          212 KDVVHLDPFDRDH  224 (233)
T ss_dssp             EEEEECTTTSTTE
T ss_pred             EEEEccCCCCCce
Confidence            9998888887664

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.65  E-value=3e-15  Score=130.76  Aligned_cols=123  Identities=15%  Similarity=0.115  Sum_probs=101.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      +.++.+|||+|||+|.++..++..++ ..|+++|+|+.+++.|++++...++      .++++...|+.+.....++||+
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~D~  111 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA------RNVTLVEAFAPEGLDDLPDPDR  111 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC------TTEEEEECCTTTTCTTSCCCSE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEeCChhhhhhcCCCCCE
Confidence            56778999999999999999998874 3799999999999999998765322      4689999998765444468999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCe
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLH  302 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~  302 (348)
                      |++..+++     ++..+++++.++|||||.+++.....              .+.+.+.++++++||.
T Consensus       112 i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~--------------~~~~~~~~~l~~~g~~  161 (204)
T 3e05_A          112 VFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL--------------DTLTKAVEFLEDHGYM  161 (204)
T ss_dssp             EEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH--------------HHHHHHHHHHHHTTCE
T ss_pred             EEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc--------------ccHHHHHHHHHHCCCc
Confidence            99988775     56799999999999999999976332              2456788999999984

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.65  E-value=4.2e-16  Score=144.40  Aligned_cols=105  Identities=19%  Similarity=0.251  Sum_probs=90.7

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHhCCC-CCCCcCCCcceeEEEcCCCCCCCCC----
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFTPET----  228 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~--~~~v~~vD~S~~~l~~a~~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~----  228 (348)
                      .++.+|||||||+|.++..++...  ..+|+++|+|+.|++.|++++... +.     ..++++.+.|+.+++...    
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~  109 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT-----YKNVSFKISSSDDFKFLGADSV  109 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C-----CTTEEEEECCTTCCGGGCTTTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----CCceEEEEcCHHhCCccccccc
Confidence            467899999999999999999643  448999999999999999987542 11     357999999999987665    


Q ss_pred             --CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          229 --GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       229 --~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                        ++||+|++..++||+   ++..+++++.++|||||.|++.
T Consensus       110 ~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          110 DKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             TSSCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEE
Confidence              799999999999999   5789999999999999999983

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.65  E-value=6e-15  Score=150.56  Aligned_cols=155  Identities=14%  Similarity=0.104  Sum_probs=114.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      .++.+|||||||+|.++..++..+.  .+|+|+|+|+.|++.|++++.........-..+++|.++|+.+++..+++||+
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence            4678999999999999999987763  37999999999999998854311000000024799999999999888789999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC--------------------ceecCCCCceecCHHHHH
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG--------------------FVLDKEDRSITRSDFYFK  293 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~--------------------~~~d~~~~~~~~s~~~l~  293 (348)
                      |++..+++|+++.....+++++.++|||| .+++........                    ..+...++.+.++.+++.
T Consensus       800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWTReEFr  878 (950)
T 3htx_A          800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKFEWTREQFN  878 (950)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSSCSCCBCHHHHH
T ss_pred             EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccCcceeecHHHHH
Confidence            99999999999777778999999999999 777765332110                    011223444556777776


Q ss_pred             H----HHHhcCCeEEEEeecCC
Q 018970          294 E----LFSRCGLHIYKSKDQKG  311 (348)
Q Consensus       294 ~----l~~~aGf~~v~~~~~~~  311 (348)
                      .    +.++.||.+.....-.+
T Consensus       879 ~Wae~LAer~GYsVefvGVGDg  900 (950)
T 3htx_A          879 QWASKLGKRHNYSVEFSGVGGS  900 (950)
T ss_dssp             HHHHHHHHHTTEEEEEEEESSC
T ss_pred             HHHHHHHHhcCcEEEEEccCCC
Confidence            6    77778998766554433

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.64  E-value=1.2e-15  Score=131.07  Aligned_cols=119  Identities=11%  Similarity=0.031  Sum_probs=88.9

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV  219 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~  219 (348)
                      .+...++...     +.++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.|++++...++      .++++.+.
T Consensus        10 ~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~   77 (185)
T 3mti_A           10 HMSHDFLAEV-----LDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI------ENTELILD   77 (185)
T ss_dssp             HHHHHHHHTT-----CCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC------CCEEEEES
T ss_pred             HHHHHHHHHh-----CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeC
Confidence            4444444432     456789999999999999999877 44799999999999999998865332      46888887


Q ss_pred             CCCCCC-CCCCceeEEeechhhhcC-------ChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          220 PLQDFT-PETGRYDVIWVQWCIGHL-------TDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       220 d~~~~~-~~~~~fD~Ii~~~~l~~~-------~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +..++. ..+++||+|+++....+.       ..++...+++++.++|||||.+++...
T Consensus        78 ~~~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           78 GHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             CGGGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cHHHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            777643 235789999987322221       224567889999999999999999764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.64  E-value=3e-15  Score=133.51  Aligned_cols=141  Identities=14%  Similarity=0.082  Sum_probs=104.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC----CCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----FTPETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~----~~~~~~  229 (348)
                      +.++.+|||+|||+|.++..++.... ..|+++|+|+.|++.+++++..        ..++.+...|+.+    .+.. +
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~v~~~~~d~~~~~~~~~~~-~  142 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--------RENIIPILGDANKPQEYANIV-E  142 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--------CTTEEEEECCTTCGGGGTTTS-C
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc--------CCCeEEEECCCCCcccccccC-c
Confidence            56778999999999999999998743 4799999999999999998765        2578999999988    6655 7


Q ss_pred             ceeEEeechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          230 RYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      +||+|+     +++++ +....+++++.++|||||.+++.-.....    +..........+++. +++++||++++...
T Consensus       143 ~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~  212 (230)
T 1fbn_A          143 KVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI----DVTKDPKEIFKEQKE-ILEAGGFKIVDEVD  212 (230)
T ss_dssp             CEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGT----CSSSCHHHHHHHHHH-HHHHHTEEEEEEEE
T ss_pred             cEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCC----CCCCCHHHhhHHHHH-HHHHCCCEEEEEEc
Confidence            899999     44442 23467899999999999999997211100    000000012335676 88999999998877


Q ss_pred             cCCCCc
Q 018970          309 QKGLPE  314 (348)
Q Consensus       309 ~~~~~~  314 (348)
                      ...+..
T Consensus       213 ~~~~~~  218 (230)
T 1fbn_A          213 IEPFEK  218 (230)
T ss_dssp             CTTTST
T ss_pred             cCCCcc
Confidence            655543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.64  E-value=2.7e-16  Score=139.83  Aligned_cols=117  Identities=13%  Similarity=0.094  Sum_probs=95.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC-CCCCCC-CCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPE-TGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~-~~~fD~  233 (348)
                      .++.+|||||||+|.++..++..+. +|+++|+|+.|++.++++.           .++++.+.|+ ..++.+ +++||+
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~~~fD~  114 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANA-----------PHADVYEWNGKGELPAGLGAPFGL  114 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHC-----------TTSEEEECCSCSSCCTTCCCCEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhC-----------CCceEEEcchhhccCCcCCCCEEE
Confidence            4668999999999999999987755 6999999999999999883           3588999999 456666 689999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      |+++      .  ++..+++++.++|||||.++....               ..+.+.+.++++++||.++...
T Consensus       115 v~~~------~--~~~~~l~~~~~~LkpgG~l~~~~~---------------~~~~~~~~~~l~~~Gf~~~~~~  165 (226)
T 3m33_A          115 IVSR------R--GPTSVILRLPELAAPDAHFLYVGP---------------RLNVPEVPERLAAVGWDIVAED  165 (226)
T ss_dssp             EEEE------S--CCSGGGGGHHHHEEEEEEEEEEES---------------SSCCTHHHHHHHHTTCEEEEEE
T ss_pred             EEeC------C--CHHHHHHHHHHHcCCCcEEEEeCC---------------cCCHHHHHHHHHHCCCeEEEEE
Confidence            9987      2  456889999999999999981110               0244568999999999988754

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.63  E-value=2.5e-15  Score=127.86  Aligned_cols=122  Identities=20%  Similarity=0.060  Sum_probs=99.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+  .|+++|+|+.|++.     .          .++++.++|+.+ +.++++||+|+
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~-----~----------~~~~~~~~d~~~-~~~~~~fD~i~   83 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES-----H----------RGGNLVRADLLC-SINQESVDVVV   83 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT-----C----------SSSCEEECSTTT-TBCGGGCSEEE
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc-----c----------cCCeEEECChhh-hcccCCCCEEE
Confidence            345699999999999999998777  79999999999986     1          358899999987 33447999999


Q ss_pred             echhhhcCChh-------hHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          236 VQWCIGHLTDD-------DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       236 ~~~~l~~~~~~-------d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      ++..+++.++.       +...+++++.+.| |||.+++.....              ...+.+.++++++||+.+....
T Consensus        84 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~--------------~~~~~l~~~l~~~gf~~~~~~~  148 (170)
T 3q87_B           84 FNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA--------------NRPKEVLARLEERGYGTRILKV  148 (170)
T ss_dssp             ECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG--------------GCHHHHHHHHHHTTCEEEEEEE
T ss_pred             ECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC--------------CCHHHHHHHHHHCCCcEEEEEe
Confidence            99998876543       4467889999999 999999987322              3467799999999999888666


Q ss_pred             cC
Q 018970          309 QK  310 (348)
Q Consensus       309 ~~  310 (348)
                      ..
T Consensus       149 ~~  150 (170)
T 3q87_B          149 RK  150 (170)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.63  E-value=3.1e-15  Score=127.18  Aligned_cols=128  Identities=17%  Similarity=0.071  Sum_probs=99.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD  232 (348)
                      ..++.+|||+|||+|.++..++..... .|+++|+|+.+++.|++++...++     ..++ +...|..+ ++...++||
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~-~~~~d~~~~~~~~~~~~D   96 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV-----SDRI-AVQQGAPRAFDDVPDNPD   96 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC-----TTSE-EEECCTTGGGGGCCSCCS
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC-----CCCE-EEecchHhhhhccCCCCC
Confidence            567789999999999999999877533 799999999999999998876543     2356 77777744 332227899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      +|++..+++|      ..+++++.++|||||.+++.....              .+...+.+++++.|+++.....
T Consensus        97 ~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~  152 (178)
T 3hm2_A           97 VIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVTV--------------ESEQMLWALRKQFGGTISSFAI  152 (178)
T ss_dssp             EEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECSH--------------HHHHHHHHHHHHHCCEEEEEEE
T ss_pred             EEEECCcccH------HHHHHHHHHhcCCCCEEEEEeecc--------------ccHHHHHHHHHHcCCeeEEEEe
Confidence            9999999987      368999999999999999886432              2345678889999998877443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.63  E-value=3.1e-15  Score=132.89  Aligned_cols=137  Identities=20%  Similarity=0.105  Sum_probs=104.1

Q ss_pred             CCCCCcEEEEecc-ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCcee
Q 018970          155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG-~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD  232 (348)
                      ..++.+|||+||| +|.++..++......|+++|+|+.+++.|++++...+       .++++.++|+..+. .++++||
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~v~~~~~d~~~~~~~~~~~fD  125 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNN-------SNVRLVKSNGGIIKGVVEGTFD  125 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTT-------CCCEEEECSSCSSTTTCCSCEE
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhC-------CCcEEEeCCchhhhhcccCcee
Confidence            4577899999999 9999999987744469999999999999999886542       26889999965442 3347899


Q ss_pred             EEeechhhhcCChh-----------------hHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHH
Q 018970          233 VIWVQWCIGHLTDD-----------------DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKEL  295 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~-----------------d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l  295 (348)
                      +|+++..+++..+.                 .+..+++.+.++|||||.+++......             ...+.+.++
T Consensus       126 ~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------~~~~~~~~~  192 (230)
T 3evz_A          126 VIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-------------KLLNVIKER  192 (230)
T ss_dssp             EEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-------------HHHHHHHHH
T ss_pred             EEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-------------hHHHHHHHH
Confidence            99998777664421                 247899999999999999998642210             234678899


Q ss_pred             HHhcCCeEEEEeecCC
Q 018970          296 FSRCGLHIYKSKDQKG  311 (348)
Q Consensus       296 ~~~aGf~~v~~~~~~~  311 (348)
                      +++.||.+.......+
T Consensus       193 l~~~g~~~~~~~~~~g  208 (230)
T 3evz_A          193 GIKLGYSVKDIKFKVG  208 (230)
T ss_dssp             HHHTTCEEEEEEECCC
T ss_pred             HHHcCCceEEEEecCC
Confidence            9999998877765443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.63  E-value=1.2e-15  Score=142.21  Aligned_cols=154  Identities=12%  Similarity=0.114  Sum_probs=111.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCC-CcCCCcceeEEEcCCCCCC----C--CC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFT----P--ET  228 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~----~--~~  228 (348)
                      .++.+|||+|||+|.++..++......|+++|+|+.|++.|+++....+.. ......++.+.+.|+.+++    +  ++
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            356799999999999999998765558999999999999999876431000 0000236899999998875    3  23


Q ss_pred             CceeEEeechhhhcC-C-hhhHHHHHHHHHHcCCCCcEEEEEecccC---------------CC-c--eecC--------
Q 018970          229 GRYDVIWVQWCIGHL-T-DDDFVSFFKRAKVGLKPGGFFVLKENIAR---------------SG-F--VLDK--------  280 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~-~-~~d~~~~l~~~~~~LkpgG~lii~~~~~~---------------~~-~--~~d~--------  280 (348)
                      ++||+|+++.++||+ . .+++..+++++.++|||||.+++......               .. +  .+..        
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  192 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFG  192 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSC
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCcc
Confidence            589999999999998 3 35678999999999999999999753210               00 0  0100        


Q ss_pred             -----------CCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          281 -----------EDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       281 -----------~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                                 ....+..+.+.+.+++++.||+++.....
T Consensus       193 ~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f  232 (313)
T 3bgv_A          193 CKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTF  232 (313)
T ss_dssp             CEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred             ceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCH
Confidence                       00112256788999999999999986643

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.63  E-value=1.6e-15  Score=136.17  Aligned_cols=129  Identities=15%  Similarity=0.142  Sum_probs=100.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC---CCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~f  231 (348)
                      .++.+|||||||+|.++..++..... .|+++|+|+.|++.|++++...++      .++++.++|+.+++..   .++|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~f  142 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAETFGQRKDVRESY  142 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHHHTTCTTTTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEeccHHHhcccccccCCc
Confidence            45679999999999999998864433 799999999999999998765432      3589999998876642   4789


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      |+|++..+    .  ++..+++.+.++|||||.+++.....            .......+.+.++++||.++....
T Consensus       143 D~V~~~~~----~--~~~~~l~~~~~~LkpgG~l~~~~g~~------------~~~~~~~~~~~l~~~g~~~~~~~~  201 (240)
T 1xdz_A          143 DIVTARAV----A--RLSVLSELCLPLVKKNGLFVALKAAS------------AEEELNAGKKAITTLGGELENIHS  201 (240)
T ss_dssp             EEEEEECC----S--CHHHHHHHHGGGEEEEEEEEEEECC-------------CHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cEEEEecc----C--CHHHHHHHHHHhcCCCCEEEEEeCCC------------chHHHHHHHHHHHHcCCeEeEEEE
Confidence            99998662    3  67899999999999999998864211            001234577889999999887654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.63  E-value=3.6e-15  Score=130.75  Aligned_cols=127  Identities=12%  Similarity=0.115  Sum_probs=101.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||+|||+|.++..++.. ...|+++|+|+.|++.|++++...++     ..++++...|+.+.......||+|
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~~~~~~~~~D~v  126 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGL-----SPRMRAVQGTAPAALADLPLPEAV  126 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCTTGGGTTSCCCSEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC-----CCCEEEEeCchhhhcccCCCCCEE
Confidence            567789999999999999999977 44799999999999999998765443     236899999998843333579999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      ++...+      +.. +++++.++|||||.+++.....              -+...+.+++++.|+++.....
T Consensus       127 ~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~~--------------~~~~~~~~~l~~~g~~i~~i~~  179 (204)
T 3njr_A          127 FIGGGG------SQA-LYDRLWEWLAPGTRIVANAVTL--------------ESETLLTQLHARHGGQLLRIDI  179 (204)
T ss_dssp             EECSCC------CHH-HHHHHHHHSCTTCEEEEEECSH--------------HHHHHHHHHHHHHCSEEEEEEE
T ss_pred             EECCcc------cHH-HHHHHHHhcCCCcEEEEEecCc--------------ccHHHHHHHHHhCCCcEEEEEe
Confidence            987643      345 9999999999999999976322              2345678889999999887543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.62  E-value=9.8e-16  Score=135.12  Aligned_cols=149  Identities=13%  Similarity=0.134  Sum_probs=99.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+|||||||+|.++..++..++. +|+++|+|+.|++.+.+.+.....  .....++.+.++|+.+++..++. |.
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~--~~~~~~v~~~~~d~~~l~~~~~~-d~  101 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPA--KGGLPNLLYLWATAERLPPLSGV-GE  101 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGG--GTCCTTEEEEECCSTTCCSCCCE-EE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhh--hcCCCceEEEecchhhCCCCCCC-CE
Confidence            356789999999999999999988643 799999999999864433321000  00024789999999998876555 66


Q ss_pred             Eee---chhhh--cCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCcee----cCHHHHHHHHHhcCCeEE
Q 018970          234 IWV---QWCIG--HLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSIT----RSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       234 Ii~---~~~l~--~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~----~s~~~l~~l~~~aGf~~v  304 (348)
                      |++   ...++  |++  +...+++++.++|||||.+++...................    ...+.+..+++++||++.
T Consensus       102 v~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~  179 (218)
T 3mq2_A          102 LHVLMPWGSLLRGVLG--SSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLA  179 (218)
T ss_dssp             EEEESCCHHHHHHHHT--SSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEE
T ss_pred             EEEEccchhhhhhhhc--cHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCce
Confidence            653   33332  666  4578999999999999999996432111000000011111    223457789999999998


Q ss_pred             EEee
Q 018970          305 KSKD  308 (348)
Q Consensus       305 ~~~~  308 (348)
                      +...
T Consensus       180 ~~~~  183 (218)
T 3mq2_A          180 DCRY  183 (218)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            8654

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.62  E-value=3.3e-15  Score=135.63  Aligned_cols=140  Identities=16%  Similarity=0.039  Sum_probs=108.7

Q ss_pred             CC-CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCce
Q 018970          155 NN-QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY  231 (348)
Q Consensus       155 ~~-~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~f  231 (348)
                      .. ++.+|||+|||+|.++..++.++...|+++|+++.+++.|++++...++     ..++.+.+.|+.++.  .+.++|
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~-----~~~v~~~~~D~~~~~~~~~~~~f  120 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQL-----EDQIEIIEYDLKKITDLIPKERA  120 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTC-----TTTEEEECSCGGGGGGTSCTTCE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC-----cccEEEEECcHHHhhhhhccCCc
Confidence            45 6789999999999999999877665899999999999999999876543     346999999998875  335799


Q ss_pred             eEEeechhhhcC------------------ChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHH
Q 018970          232 DVIWVQWCIGHL------------------TDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFK  293 (348)
Q Consensus       232 D~Ii~~~~l~~~------------------~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~  293 (348)
                      |+|+++..+...                  ...++..+++.+.++|||||.+++....               ....++.
T Consensus       121 D~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------~~~~~~~  185 (259)
T 3lpm_A          121 DIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP---------------ERLLDII  185 (259)
T ss_dssp             EEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT---------------TTHHHHH
T ss_pred             cEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH---------------HHHHHHH
Confidence            999998665433                  1134678999999999999999995321               2345688


Q ss_pred             HHHHhcCCeEEEEeecCCCCc
Q 018970          294 ELFSRCGLHIYKSKDQKGLPE  314 (348)
Q Consensus       294 ~l~~~aGf~~v~~~~~~~~~~  314 (348)
                      ..+++.||...........+.
T Consensus       186 ~~l~~~~~~~~~~~~v~~~~~  206 (259)
T 3lpm_A          186 DIMRKYRLEPKRIQFVHPRSD  206 (259)
T ss_dssp             HHHHHTTEEEEEEEEEESSTT
T ss_pred             HHHHHCCCceEEEEEeecCCC
Confidence            899999999888766554443

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.62  E-value=3.6e-15  Score=131.37  Aligned_cols=132  Identities=16%  Similarity=0.156  Sum_probs=102.5

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV  233 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~  233 (348)
                      ++.+|||||||+|.++..++...+. .|+++|+|+.+++.|++++...++      .++.+.++|+.+++  .++++||+
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~D~  114 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSDLTDYFEDGEIDR  114 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSCGGGTSCTTCCSE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC------CCEEEEeCCHHHHHhhcCCCCCCE
Confidence            4568999999999999999988654 799999999999999998765332      46899999998866  55678999


Q ss_pred             EeechhhhcCChh------hHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          234 IWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       234 Ii~~~~l~~~~~~------d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      |+++....+....      ....+++.+.++|+|||.+++.....              ...+.+.++++++||.++...
T Consensus       115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~  180 (214)
T 1yzh_A          115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR--------------GLFEYSLVSFSQYGMKLNGVW  180 (214)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH--------------HHHHHHHHHHHHHTCEEEEEE
T ss_pred             EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH--------------HHHHHHHHHHHHCCCeeeecc
Confidence            9998664332211      13579999999999999999875211              012457788899999988765


Q ss_pred             e
Q 018970          308 D  308 (348)
Q Consensus       308 ~  308 (348)
                      .
T Consensus       181 ~  181 (214)
T 1yzh_A          181 L  181 (214)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.62  E-value=1.2e-15  Score=145.97  Aligned_cols=138  Identities=14%  Similarity=0.184  Sum_probs=107.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..+..+|||||||+|.++..++.+++. .++++|+ +.|++.|++            ..++++...|+.+ +.+ . ||+
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~~~-~-~D~  270 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------------LSGIEHVGGDMFA-SVP-Q-GDA  270 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTT-CCC-C-EEE
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------------cCCCEEEeCCccc-CCC-C-CCE
Confidence            356689999999999999999988765 6888899 899976643            1358999999987 444 3 999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc----------eecC----CCCceecCHHHHHHHHHhc
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF----------VLDK----EDRSITRSDFYFKELFSRC  299 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~----------~~d~----~~~~~~~s~~~l~~l~~~a  299 (348)
                      |++..++||+++++...++++++++|||||.|++.+.......          ..+.    ......++.++|.++++++
T Consensus       271 v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a  350 (372)
T 1fp1_D          271 MILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLS  350 (372)
T ss_dssp             EEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred             EEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHC
Confidence            9999999999976667999999999999999999875432211          0010    0112236889999999999


Q ss_pred             CCeEEEEee
Q 018970          300 GLHIYKSKD  308 (348)
Q Consensus       300 Gf~~v~~~~  308 (348)
                      ||++++...
T Consensus       351 Gf~~~~~~~  359 (372)
T 1fp1_D          351 GFSKFQVAC  359 (372)
T ss_dssp             TCSEEEEEE
T ss_pred             CCceEEEEE
Confidence            999998765

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.61  E-value=3.3e-15  Score=141.77  Aligned_cols=139  Identities=15%  Similarity=0.247  Sum_probs=108.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..+..+|||||||+|.++..+++.++. +++++|+ +.|++.|++.            .++++...|+.+ +.+  .||+
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~~-~~p--~~D~  249 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------------NNLTYVGGDMFT-SIP--NADA  249 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------------TTEEEEECCTTT-CCC--CCSE
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------------CCcEEEeccccC-CCC--CccE
Confidence            345679999999999999999988654 7999999 9999876531            348999999976 433  3999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCC---CcEEEEEecccCCCc----------eecCC---CCceecCHHHHHHHHH
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKP---GGFFVLKENIARSGF----------VLDKE---DRSITRSDFYFKELFS  297 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~Lkp---gG~lii~~~~~~~~~----------~~d~~---~~~~~~s~~~l~~l~~  297 (348)
                      |++.+++||+++++...++++++++|||   ||++++.+.......          ..+..   .....++.++|.++++
T Consensus       250 v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~  329 (352)
T 1fp2_A          250 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFI  329 (352)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHH
T ss_pred             EEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHH
Confidence            9999999999976667999999999999   999999886543211          01100   0122368899999999


Q ss_pred             hcCCeEEEEeec
Q 018970          298 RCGLHIYKSKDQ  309 (348)
Q Consensus       298 ~aGf~~v~~~~~  309 (348)
                      ++||++++....
T Consensus       330 ~aGf~~~~~~~~  341 (352)
T 1fp2_A          330 EAGFQHYKISPL  341 (352)
T ss_dssp             HTTCCEEEEEEE
T ss_pred             HCCCCeeEEEec
Confidence            999999987653

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.61  E-value=1.6e-15  Score=129.37  Aligned_cols=118  Identities=13%  Similarity=0.159  Sum_probs=96.0

Q ss_pred             cCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC---CCCc
Q 018970          154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGR  230 (348)
Q Consensus       154 ~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~  230 (348)
                      +++++.+|||||||.              | .+|+|+.|++.|+++...          ++++.+.|+.+++.   ++++
T Consensus         9 g~~~g~~vL~~~~g~--------------v-~vD~s~~ml~~a~~~~~~----------~~~~~~~d~~~~~~~~~~~~~   63 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS--------------S-PVEALKGLVDKLQALTGN----------EGRVSVENIKQLLQSAHKESS   63 (176)
T ss_dssp             TCCTTSEEEEEECTT--------------S-CHHHHHHHHHHHHHHTTT----------TSEEEEEEGGGGGGGCCCSSC
T ss_pred             CCCCCCEEEEecCCc--------------e-eeeCCHHHHHHHHHhccc----------CcEEEEechhcCccccCCCCC
Confidence            467889999999996              2 299999999999998743          38899999988876   6789


Q ss_pred             eeEEeechhhhcC-ChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          231 YDVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       231 fD~Ii~~~~l~~~-~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      ||+|+++.++||+ +  +...++++++++|||||.|++.+.....     .....+.++.+++.++++++|| +.
T Consensus        64 fD~V~~~~~l~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~aGf-i~  130 (176)
T 2ld4_A           64 FDIILSGLVPGSTTL--HSAEILAEIARILRPGGCLFLKEPVETA-----VDNNSKVKTASKLCSALTLSGL-VE  130 (176)
T ss_dssp             EEEEEECCSTTCCCC--CCHHHHHHHHHHEEEEEEEEEEEEEESS-----SCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred             EeEEEECChhhhccc--CHHHHHHHHHHHCCCCEEEEEEcccccc-----cccccccCCHHHHHHHHHHCCC-cE
Confidence            9999999999999 6  5689999999999999999996543211     1113344688999999999999 44

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.60  E-value=1.2e-14  Score=133.69  Aligned_cols=142  Identities=11%  Similarity=0.085  Sum_probs=99.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcC-CHHHHHHHHHHh-----CCCCCCCcCCCcceeEEEcCCCCCC--C-
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP-VSHFLDAARESL-----APENHMAPDMHKATNFFCVPLQDFT--P-  226 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~-S~~~l~~a~~~~-----~~~~~~~~~~~~~i~~~~~d~~~~~--~-  226 (348)
                      .++.+|||+|||+|.++..++..+...|+++|+ |+.+++.|++++     ...++... ...++.+...++.+..  . 
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~  156 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETV-KRASPKVVPYRWGDSPDSLQ  156 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEEEECCTTSCTHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccC-CCCCeEEEEecCCCccHHHH
Confidence            456799999999999999888776657999999 899999999988     33222000 0035777766655431  1 


Q ss_pred             ---CCCceeEEeechhhhcCChhhHHHHHHHHHHcCC---C--CcEEEEEecccCCCceecCCCCceecCHHHHHHHHHh
Q 018970          227 ---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK---P--GGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSR  298 (348)
Q Consensus       227 ---~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lk---p--gG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~  298 (348)
                         ..++||+|++..+++|.+  +...+++.+.++|+   |  ||.+++........         .......+.+.+++
T Consensus       157 ~~~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~---------~~~~~~~~~~~l~~  225 (281)
T 3bzb_A          157 RCTGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLALPANDPTAVALVTFTHHRPH---------LAERDLAFFRLVNA  225 (281)
T ss_dssp             HHHSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBCCTTTCTTCEEEEEECC-----------------CTHHHHHHHH
T ss_pred             hhccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc---------cchhHHHHHHHHHh
Confidence               247899999999999866  78899999999999   9  99887753221100         01122456778899


Q ss_pred             cC-CeEEEEeec
Q 018970          299 CG-LHIYKSKDQ  309 (348)
Q Consensus       299 aG-f~~v~~~~~  309 (348)
                      .| |++......
T Consensus       226 ~G~f~v~~~~~~  237 (281)
T 3bzb_A          226 DGALIAEPWLSP  237 (281)
T ss_dssp             STTEEEEEEECC
T ss_pred             cCCEEEEEeccc
Confidence            99 998876443

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.60  E-value=2.8e-15  Score=133.64  Aligned_cols=147  Identities=19%  Similarity=0.159  Sum_probs=95.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCC-HHHHHHH---HHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPV-SHFLDAA---RESLAPENHMAPDMHKATNFFCVPLQDFTPE-TG  229 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S-~~~l~~a---~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~  229 (348)
                      .++.+|||||||+|.++..++..... .|+|+|+| +.|++.|   ++++...++      .++.+.++|+.+++.. .+
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~------~~v~~~~~d~~~l~~~~~d   96 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL------SNVVFVIAAAESLPFELKN   96 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC------SSEEEECCBTTBCCGGGTT
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC------CCeEEEEcCHHHhhhhccC
Confidence            46679999999999999999865544 79999999 7787776   665544332      4689999999988632 24


Q ss_pred             ceeEEeechhhhcCC---hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCce-ecCHH-----HHHHHHHhcC
Q 018970          230 RYDVIWVQWCIGHLT---DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSI-TRSDF-----YFKELFSRCG  300 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~---~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~-~~s~~-----~l~~l~~~aG  300 (348)
                      .+|.|+++....+..   ..+...++++++++|||||.+++.................. ..+..     ++..+++++|
T Consensus        97 ~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aG  176 (225)
T 3p2e_A           97 IADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSG  176 (225)
T ss_dssp             CEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHT
T ss_pred             eEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcC
Confidence            566666654322110   01235789999999999999999443222100000000000 12223     3889999999


Q ss_pred             CeEEEEee
Q 018970          301 LHIYKSKD  308 (348)
Q Consensus       301 f~~v~~~~  308 (348)
                      |++.....
T Consensus       177 f~v~~~~~  184 (225)
T 3p2e_A          177 FRIDDVKE  184 (225)
T ss_dssp             CEEEEEEE
T ss_pred             CCeeeeee
Confidence            99888654

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.60  E-value=2.1e-14  Score=126.53  Aligned_cols=137  Identities=12%  Similarity=-0.016  Sum_probs=96.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC----CCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~  229 (348)
                      +.++.+|||+|||+|.++..++.... ..|+++|+|+.|++.+.+....        ..++.+...|+.+.    +.. +
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~~~-~  125 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--------RNNIIPLLFDASKPWKYSGIV-E  125 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--------CSSEEEECSCTTCGGGTTTTC-C
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc--------CCCeEEEEcCCCCchhhcccc-c
Confidence            56788999999999999999987653 3799999999988766655433        23577888888763    333 7


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHH----HHHHhcCCeEEE
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFK----ELFSRCGLHIYK  305 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~----~l~~~aGf~~v~  305 (348)
                      +||+|++.. .++   ++...++++++++|||||.|++.....   . .   +  ...+.+++.    +.++++ |++++
T Consensus       126 ~fD~V~~~~-~~~---~~~~~~l~~~~r~LkpgG~l~i~~~~~---~-~---~--~~~~~~~~~~~~~~~l~~~-f~~~~  191 (210)
T 1nt2_A          126 KVDLIYQDI-AQK---NQIEILKANAEFFLKEKGEVVIMVKAR---S-I---D--STAEPEEVFKSVLKEMEGD-FKIVK  191 (210)
T ss_dssp             CEEEEEECC-CST---THHHHHHHHHHHHEEEEEEEEEEEEHH---H-H---C--TTSCHHHHHHHHHHHHHTT-SEEEE
T ss_pred             ceeEEEEec-cCh---hHHHHHHHHHHHHhCCCCEEEEEEecC---C-c---c--ccCCHHHHHHHHHHHHHhh-cEEee
Confidence            899999873 221   245567999999999999999984221   0 0   0  112333332    237888 99999


Q ss_pred             EeecCCCCc
Q 018970          306 SKDQKGLPE  314 (348)
Q Consensus       306 ~~~~~~~~~  314 (348)
                      .....++..
T Consensus       192 ~~~~~p~~~  200 (210)
T 1nt2_A          192 HGSLMPYHR  200 (210)
T ss_dssp             EEECTTTCT
T ss_pred             eecCCCCCC
Confidence            888766544

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.59  E-value=5.6e-15  Score=130.40  Aligned_cols=131  Identities=14%  Similarity=0.206  Sum_probs=99.2

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV  233 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~  233 (348)
                      ++.+|||||||+|.++..++...+. .|+|+|+|+.|++.|++++...++      .++.+.++|+.+++  +++++||.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~------~nv~~~~~d~~~l~~~~~~~~~d~  111 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTDVFEPGEVKR  111 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHHHCCTTSCCE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC------CCEEEEeCCHHHHHhhcCcCCcCE
Confidence            4568999999999999999987654 799999999999999998765432      46899999988764  45678999


Q ss_pred             EeechhhhcCChh------hHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          234 IWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       234 Ii~~~~l~~~~~~------d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      |+++....+....      ....+++.+.++|||||.|++.....              ...+++.+.+++.||......
T Consensus       112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~--------------~~~~~~~~~~~~~g~~~~~~~  177 (213)
T 2fca_A          112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR--------------GLFEYSLKSFSEYGLLLTYVS  177 (213)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH--------------HHHHHHHHHHHHHTCEEEEEE
T ss_pred             EEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH--------------HHHHHHHHHHHHCCCcccccc
Confidence            9886543322210      13579999999999999999875221              012346778888999877654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.58  E-value=4.4e-15  Score=127.26  Aligned_cols=126  Identities=18%  Similarity=0.223  Sum_probs=99.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||+|||+|.++..++..+ ..|+++|+|+.+++.+++++...++     ..++.+.+.|+.+.....++||+|
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~v  104 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGL-----GDNVTLMEGDAPEALCKIPDIDIA  104 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTC-----CTTEEEEESCHHHHHTTSCCEEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEecCHHHhcccCCCCCEE
Confidence            5677899999999999999998777 6799999999999999998765332     246889998876621112589999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      ++..+++     ++..+++.+.++|+|||.+++.....              .+...+.+++++.||.+..
T Consensus       105 ~~~~~~~-----~~~~~l~~~~~~l~~gG~l~~~~~~~--------------~~~~~~~~~l~~~g~~~~~  156 (192)
T 1l3i_A          105 VVGGSGG-----ELQEILRIIKDKLKPGGRIIVTAILL--------------ETKFEAMECLRDLGFDVNI  156 (192)
T ss_dssp             EESCCTT-----CHHHHHHHHHHTEEEEEEEEEEECBH--------------HHHHHHHHHHHHTTCCCEE
T ss_pred             EECCchH-----HHHHHHHHHHHhcCCCcEEEEEecCc--------------chHHHHHHHHHHCCCceEE
Confidence            9988775     45789999999999999999976321              2345688899999995433

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.58  E-value=2.3e-15  Score=144.23  Aligned_cols=108  Identities=21%  Similarity=0.216  Sum_probs=92.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++..+..+|+++|+| .|++.|++++...++     ..++++.++|+.+++.+ ++||+|
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~-~~~D~I  133 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNL-----DHIVEVIEGSVEDISLP-EKVDVI  133 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTC-----TTTEEEEESCGGGCCCS-SCEEEE
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCC-----CCeEEEEECchhhcCcC-CcceEE
Confidence            46778999999999999999998877689999999 999999998876544     35699999999998876 899999


Q ss_pred             eechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          235 WVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       235 i~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ++.++.+++.. .++..+++.+.++|||||.|++..
T Consensus       134 v~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          134 ISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             EECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             EEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            99776666543 468889999999999999998754

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.58  E-value=2.5e-15  Score=129.73  Aligned_cols=109  Identities=13%  Similarity=0.050  Sum_probs=90.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~  233 (348)
                      .++.+|||+|||+|.++..++..+...|+++|+|+.|++.|++++...++      .++++.++|+.++.  .+.++||+
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~fD~  116 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL------SGATLRRGAVAAVVAAGTTSPVDL  116 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC------SCEEEEESCHHHHHHHCCSSCCSE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC------CceEEEEccHHHHHhhccCCCccE
Confidence            45679999999999999988877766899999999999999998765322      36899999987764  23478999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHH--cCCCCcEEEEEecc
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKENI  271 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~--~LkpgG~lii~~~~  271 (348)
                      |+++.++++.. ++...+++.+.+  +|+|||.+++....
T Consensus       117 i~~~~p~~~~~-~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          117 VLADPPYNVDS-ADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             EEECCCTTSCH-HHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             EEECCCCCcch-hhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            99998877652 378899999999  99999999997643

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.58  E-value=3.8e-15  Score=135.11  Aligned_cols=128  Identities=15%  Similarity=0.119  Sum_probs=103.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+. .|+++|+|+.+++.|++++...++       .+++...|+.+. .+.++||+|+
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~-------~v~~~~~d~~~~-~~~~~fD~Vv  189 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV-------RPRFLEGSLEAA-LPFGPFDLLV  189 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC-------CCEEEESCHHHH-GGGCCEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCC-------cEEEEECChhhc-CcCCCCCEEE
Confidence            4667999999999999999887777 799999999999999998765322       278888887652 2246899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCC
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKG  311 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~  311 (348)
                      ++...+     .+..+++.+.++|||||.++++....              .+.+.+.++++++||+++.......
T Consensus       190 ~n~~~~-----~~~~~l~~~~~~LkpgG~lils~~~~--------------~~~~~v~~~l~~~Gf~~~~~~~~~~  246 (254)
T 2nxc_A          190 ANLYAE-----LHAALAPRYREALVPGGRALLTGILK--------------DRAPLVREAMAGAGFRPLEEAAEGE  246 (254)
T ss_dssp             EECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEG--------------GGHHHHHHHHHHTTCEEEEEEEETT
T ss_pred             ECCcHH-----HHHHHHHHHHHHcCCCCEEEEEeecc--------------CCHHHHHHHHHHCCCEEEEEeccCC
Confidence            976655     35689999999999999999976432              2467899999999999998776543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.58  E-value=9e-15  Score=132.66  Aligned_cols=100  Identities=23%  Similarity=0.322  Sum_probs=85.8

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      ++.+|||||||+|.++..++..+. +|+++|+|+.|++.|+++...            .+.+.|+.+++.++++||+|++
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~------------~~~~~d~~~~~~~~~~fD~v~~  120 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK------------NVVEAKAEDLPFPSGAFEAVLA  120 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS------------CEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCC------------CEEECcHHHCCCCCCCEEEEEE
Confidence            567999999999999999987755 699999999999999988631            2788899988877789999999


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      ..+++|+.+ ++..+++++.++|||||.+++...
T Consensus       121 ~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          121 LGDVLSYVE-NKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             CSSHHHHCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cchhhhccc-cHHHHHHHHHHHcCCCeEEEEEeC
Confidence            887776632 588999999999999999999753

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.58  E-value=2.2e-14  Score=124.34  Aligned_cols=111  Identities=12%  Similarity=-0.001  Sum_probs=89.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f  231 (348)
                      +.++.+|||+|||+|.++..++... . ..|+++|+|+.+++.|++++...++     ..++++.+.|+.+++ ..+++|
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~f   94 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL-----IDRVTLIKDGHQNMDKYIDCPV   94 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC-----GGGEEEECSCGGGGGGTCCSCE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHHHHhhhccCCc
Confidence            4567899999999999999998773 2 3799999999999999999876433     357999999988775 445789


Q ss_pred             eEEeechhhh-------cCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          232 DVIWVQWCIG-------HLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       232 D~Ii~~~~l~-------~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      |+|+++..+.       ....++...+++++.++|||||.+++...
T Consensus        95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            9999987551       11123567899999999999999999864

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.57  E-value=2.3e-14  Score=127.82  Aligned_cols=145  Identities=10%  Similarity=-0.045  Sum_probs=102.7

Q ss_pred             cCCCCCcEEEEeccccHHHHHHHHhC-C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC---CCCC
Q 018970          154 RNNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPET  228 (348)
Q Consensus       154 ~~~~~~~VLDvGcG~G~~~~~la~~~-~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~  228 (348)
                      .+.++.+|||+|||+|.++..++... . ..|+++|+|+.|++.+.+++..        ..++.+..+|+.+.   +...
T Consensus        74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~~~  145 (233)
T 2ipx_A           74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--------RTNIIPVIEDARHPHKYRMLI  145 (233)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--------CTTEEEECSCTTCGGGGGGGC
T ss_pred             cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc--------cCCeEEEEcccCChhhhcccC
Confidence            35678899999999999999999773 2 4799999999988877766543        24688999999873   3345


Q ss_pred             CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      ++||+|++..+    ..+....+++++.++|||||.+++........+  . ......++. + .++++++||++++...
T Consensus       146 ~~~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~--~-~~~~~~~~~-~-~~~l~~~Gf~~~~~~~  216 (233)
T 2ipx_A          146 AMVDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDS--T-ASAEAVFAS-E-VKKMQQENMKPQEQLT  216 (233)
T ss_dssp             CCEEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCS--S-SCHHHHHHH-H-HHTTGGGTEEEEEEEE
T ss_pred             CcEEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEEEccccccc--C-CCHHHHHHH-H-HHHHHHCCCceEEEEe
Confidence            78999998554    222446678999999999999999643210000  0 000000222 2 5888999999999777


Q ss_pred             cCCCCcc
Q 018970          309 QKGLPEE  315 (348)
Q Consensus       309 ~~~~~~~  315 (348)
                      ...++..
T Consensus       217 ~~~~~~~  223 (233)
T 2ipx_A          217 LEPYERD  223 (233)
T ss_dssp             CTTTSSS
T ss_pred             cCCccCC
Confidence            7666654

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.56  E-value=1.2e-14  Score=131.46  Aligned_cols=130  Identities=15%  Similarity=0.045  Sum_probs=101.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC---CCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~f  231 (348)
                      .++.+|||||||+|..+..++...+. +|+++|+|+.+++.|++++...++      .++++.++|+++++..   .++|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l------~~v~~~~~d~~~~~~~~~~~~~f  152 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL------KGARALWGRAEVLAREAGHREAY  152 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEECCHHHHTTSTTTTTCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CceEEEECcHHHhhcccccCCCc
Confidence            56789999999999999999877544 799999999999999998875443      3589999999887642   3789


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      |+|++..+    .  ++..+++.+.++|||||.+++......            .-....+.+.++..||++......
T Consensus       153 D~I~s~a~----~--~~~~ll~~~~~~LkpgG~l~~~~g~~~------------~~e~~~~~~~l~~~G~~~~~~~~~  212 (249)
T 3g89_A          153 ARAVARAV----A--PLCVLSELLLPFLEVGGAAVAMKGPRV------------EEELAPLPPALERLGGRLGEVLAL  212 (249)
T ss_dssp             EEEEEESS----C--CHHHHHHHHGGGEEEEEEEEEEECSCC------------HHHHTTHHHHHHHHTEEEEEEEEE
T ss_pred             eEEEECCc----C--CHHHHHHHHHHHcCCCeEEEEEeCCCc------------HHHHHHHHHHHHHcCCeEEEEEEe
Confidence            99998643    3  567899999999999999988653210            011234677888999998886654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.56  E-value=1.1e-14  Score=139.62  Aligned_cols=219  Identities=19%  Similarity=0.229  Sum_probs=138.7

Q ss_pred             cchhhhhhhhh--hHhhhhhcccCCCCCCCCcccccccCCCCCCCcccCHHHHHHHh---hcCC--ccchhh-hhhHHH-
Q 018970           37 TLHLLHVGRRK--EKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQ---IGED--GEQQEK-KTQWYR-  107 (348)
Q Consensus        37 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~---l~~~--~~~~~~-~~~~y~-  107 (348)
                      ..-|+.+|+.|  ..++..++.+.+.-  +..+.+.+.|.+.+|     ++...+..   ++..  ..+... .-.|+. 
T Consensus       103 d~v~~~~Pk~k~~~~~~~~l~~~~~~l--~~g~~i~~~g~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  175 (381)
T 3dmg_A          103 DLVVLALPAGRGTAYVQASLVAAARAL--RMGGRLYLAGDKNKG-----FERYFKEARALLGYGVVVRREGPYRVALLEK  175 (381)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHHHHHE--EEEEEEEEEEEGGGT-----HHHHHHHHHHHHSCEEEEEEETTEEEEEEEC
T ss_pred             CEEEEECCcchhHHHHHHHHHHHHHhC--CCCCEEEEEEccHHH-----HHHHHHHHHhhhccccccccccCcEEEEEEc
Confidence            34577799877  45677776655411  124566678888888     55555543   2210  001011 111121 


Q ss_pred             -----hhhhccccccccccc---cccCccccccc-ChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHh
Q 018970          108 -----EGISYWEGVEASVDG---VLGGFGNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR  178 (348)
Q Consensus       108 -----~~~~yW~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~  178 (348)
                           .....|......+.+   .+.....++.. ........+...+...+.. ...++.+|||+|||+|.++..++..
T Consensus       176 ~~~~p~~~~~w~~~~~~~~g~~~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~-~~~~~~~VLDlGcG~G~~~~~la~~  254 (381)
T 3dmg_A          176 EKEAPPLPSLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGP-EGVRGRQVLDLGAGYGALTLPLARM  254 (381)
T ss_dssp             CSCCCCCCCCCEEEEEEETTEEEEEEECTTCTTTTSCCHHHHHHHHHHHHHHCT-TTTTTCEEEEETCTTSTTHHHHHHT
T ss_pred             cCCCCCCccccceeeEEecCceEEEEeCCCceeCCCCCHHHHHHHHHHHHhhcc-cCCCCCEEEEEeeeCCHHHHHHHHc
Confidence                 123445433222111   11111223332 1233344444444433210 1235679999999999999999987


Q ss_pred             CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhc---CChhhHHHHHHHH
Q 018970          179 YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH---LTDDDFVSFFKRA  255 (348)
Q Consensus       179 ~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~---~~~~d~~~~l~~~  255 (348)
                      +. +|+++|+|+.+++.|++++...+       ..+++.+.|+.+...+.++||+|+++.++|+   ...++...+++++
T Consensus       255 g~-~V~gvDis~~al~~A~~n~~~~~-------~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~  326 (381)
T 3dmg_A          255 GA-EVVGVEDDLASVLSLQKGLEANA-------LKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVA  326 (381)
T ss_dssp             TC-EEEEEESBHHHHHHHHHHHHHTT-------CCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHH
T ss_pred             CC-EEEEEECCHHHHHHHHHHHHHcC-------CCeEEEEcchhhccccCCCeEEEEECCchhhcccccHHHHHHHHHHH
Confidence            65 69999999999999999986542       2488999999988766679999999999998   3345788999999


Q ss_pred             HHcCCCCcEEEEEecc
Q 018970          256 KVGLKPGGFFVLKENI  271 (348)
Q Consensus       256 ~~~LkpgG~lii~~~~  271 (348)
                      .++|||||.+++..+.
T Consensus       327 ~~~LkpGG~l~iv~n~  342 (381)
T 3dmg_A          327 AARLRPGGVFFLVSNP  342 (381)
T ss_dssp             HHHEEEEEEEEEEECT
T ss_pred             HHhcCcCcEEEEEEcC
Confidence            9999999999998643

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.55  E-value=2.5e-14  Score=131.44  Aligned_cols=130  Identities=15%  Similarity=0.150  Sum_probs=103.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+...|+++|+|+.|++.|++++...++     ..++++.++|+.++.. .++||+|+
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~-----~~~v~~~~~D~~~~~~-~~~fD~Vi  197 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFPG-ENIADRIL  197 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEECCHHHhcc-cCCccEEE
Confidence            45789999999999999999988776799999999999999998875443     3458899999999876 57999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      +....      ....+++.+.++|||||.+++.+.......        .....+.+.+.++++|+++..
T Consensus       198 ~~~p~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--------~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          198 MGYVV------RTHEFIPKALSIAKDGAIIHYHNTVPEKLM--------PREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             ECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGT--------TTTTHHHHHHHHHHTTCEEEE
T ss_pred             ECCch------hHHHHHHHHHHHCCCCeEEEEEEeeccccc--------cccHHHHHHHHHHHcCCeeEE
Confidence            86442      235789999999999999999875431110        112456788999999999766

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.55  E-value=7.6e-14  Score=126.94  Aligned_cols=136  Identities=15%  Similarity=0.089  Sum_probs=101.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCC---CCCCCcCCCcceeEEEcCCCCC------
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAP---ENHMAPDMHKATNFFCVPLQDF------  224 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~---~~~~~~~~~~~i~~~~~d~~~~------  224 (348)
                      ..++.+|||+|||+|.++..++.+... .|+++|+++.+++.|++++..   .++     ..++++.+.|+.++      
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l-----~~~v~~~~~D~~~~~~~~~~  108 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF-----SARIEVLEADVTLRAKARVE  108 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT-----GGGEEEEECCTTCCHHHHHH
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC-----cceEEEEeCCHHHHhhhhhh
Confidence            456679999999999999999988754 799999999999999999876   543     34689999999887      


Q ss_pred             -CCCCCceeEEeechhhhcC----------------ChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceec
Q 018970          225 -TPETGRYDVIWVQWCIGHL----------------TDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITR  287 (348)
Q Consensus       225 -~~~~~~fD~Ii~~~~l~~~----------------~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~  287 (348)
                       ..++++||+|+++..+...                ....+..+++.+.++|||||.|++....               .
T Consensus       109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------~  173 (260)
T 2ozv_A          109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP---------------Q  173 (260)
T ss_dssp             TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG---------------G
T ss_pred             hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH---------------H
Confidence             2345789999998544322                2234788999999999999999986421               1


Q ss_pred             CHHHHHHHHHhcCCeEEEEeecCC
Q 018970          288 SDFYFKELFSRCGLHIYKSKDQKG  311 (348)
Q Consensus       288 s~~~l~~l~~~aGf~~v~~~~~~~  311 (348)
                      ...++.+++++. |..+.......
T Consensus       174 ~~~~~~~~l~~~-~~~~~i~~v~~  196 (260)
T 2ozv_A          174 SVAEIIAACGSR-FGGLEITLIHP  196 (260)
T ss_dssp             GHHHHHHHHTTT-EEEEEEEEEES
T ss_pred             HHHHHHHHHHhc-CCceEEEEEcC
Confidence            234566777764 77666554433

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.55  E-value=1.2e-13  Score=123.30  Aligned_cols=150  Identities=11%  Similarity=-0.031  Sum_probs=99.8

Q ss_pred             cCCccCCCCCcEEEEeccccHHHHHHHHhCC-C-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--
Q 018970          150 FPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--  225 (348)
Q Consensus       150 l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--  225 (348)
                      +....+.++.+|||+|||+|.++..++.... . .|+++|+|+.|++...+....        ..++.+...|+....  
T Consensus        69 l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~--------r~nv~~i~~Da~~~~~~  140 (232)
T 3id6_C           69 LKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR--------RPNIFPLLADARFPQSY  140 (232)
T ss_dssp             CSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH--------CTTEEEEECCTTCGGGT
T ss_pred             hhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCeEEEEcccccchhh
Confidence            3334578899999999999999999987632 2 799999999997655444322        246889999987632  


Q ss_pred             -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                       ...++||+|++..+.   + +....++..+.++|||||.|+++..........+...     ......+.++++||+++
T Consensus       141 ~~~~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e-----~~~~~~~~L~~~gf~~~  211 (232)
T 3id6_C          141 KSVVENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKE-----IYKTEVEKLENSNFETI  211 (232)
T ss_dssp             TTTCCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC-------CCSSS-----STTHHHHHHHHTTEEEE
T ss_pred             hccccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHH-----HHHHHHHHHHHCCCEEE
Confidence             113689999987553   2 1333445666779999999999842211000111111     11235567788899999


Q ss_pred             EEeecCCCCccc
Q 018970          305 KSKDQKGLPEEL  316 (348)
Q Consensus       305 ~~~~~~~~~~~l  316 (348)
                      +.....++..+.
T Consensus       212 ~~~~l~p~~~~h  223 (232)
T 3id6_C          212 QIINLDPYDKDH  223 (232)
T ss_dssp             EEEECTTTCSSC
T ss_pred             EEeccCCCcCce
Confidence            988877775543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.55  E-value=2.8e-15  Score=128.68  Aligned_cols=119  Identities=10%  Similarity=0.044  Sum_probs=91.3

Q ss_pred             hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcc
Q 018970          135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA  213 (348)
Q Consensus       135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~  213 (348)
                      ++..+.++...+..      +.++.+|||+|||+|.++..++...+. +|+++|+|+.|++.+++++...|.     ..+
T Consensus        33 Lp~ld~fY~~~~~~------l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~-----~~~  101 (200)
T 3fzg_A           33 VATLNDFYTYVFGN------IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT-----TIK  101 (200)
T ss_dssp             GGGHHHHHHHHHHH------SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC-----SSE
T ss_pred             hHhHHHHHHHHHhh------cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----Ccc
Confidence            44455555555543      356789999999999999999766433 899999999999999999876543     224


Q ss_pred             eeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       214 i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +.+  .|..... +.++||+|++..++|++.  +....+.++.+.|+|||+++-.+
T Consensus       102 v~~--~d~~~~~-~~~~~DvVLa~k~LHlL~--~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          102 YRF--LNKESDV-YKGTYDVVFLLKMLPVLK--QQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             EEE--ECCHHHH-TTSEEEEEEEETCHHHHH--HTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             EEE--ecccccC-CCCCcChhhHhhHHHhhh--hhHHHHHHHHHHhCCCCEEEEeC
Confidence            444  5554433 347899999999999994  56677779999999999988776

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.55  E-value=1.1e-14  Score=133.89  Aligned_cols=103  Identities=14%  Similarity=0.047  Sum_probs=85.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      +.++.+|||||||+|.++..++.+. ..+|+++|+|+.|++.|++++...|+      .+++|.++|+.+++  +++||+
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl------~~v~~v~gDa~~l~--d~~FDv  191 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV------DGVNVITGDETVID--GLEFDV  191 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC------CSEEEEESCGGGGG--GCCCSE
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC------CCeEEEECchhhCC--CCCcCE
Confidence            7889999999999998775554443 33799999999999999999865432      46899999998875  578999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      |++...   .+  +...+++++.++|||||.|++...
T Consensus       192 V~~~a~---~~--d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          192 LMVAAL---AE--PKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             EEECTT---CS--CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             EEECCC---cc--CHHHHHHHHHHHcCCCcEEEEEcC
Confidence            998654   34  778999999999999999999764

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.54  E-value=2e-14  Score=135.84  Aligned_cols=104  Identities=16%  Similarity=0.143  Sum_probs=87.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..+++.+...|+++|+|+ |++.|++++...++     ..++++..+|+.+++.++++||+|
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~D~I  135 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKL-----EDTITLIKGKIEEVHLPVEKVDVI  135 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTC-----TTTEEEEESCTTTSCCSCSCEEEE
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCC-----CCcEEEEEeeHHHhcCCCCcEEEE
Confidence            456789999999999999999887665899999996 99999998765443     357999999999988776899999


Q ss_pred             eech---hhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970          235 WVQW---CIGHLTDDDFVSFFKRAKVGLKPGGFFV  266 (348)
Q Consensus       235 i~~~---~l~~~~~~d~~~~l~~~~~~LkpgG~li  266 (348)
                      ++.+   .+.+..  ++..+++++.++|||||.++
T Consensus       136 vs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          136 ISEWMGYFLLFES--MLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EECCCBTTBTTTC--HHHHHHHHHHHHEEEEEEEE
T ss_pred             EEcCchhhccCHH--HHHHHHHHHHhhcCCCcEEE
Confidence            9877   344444  67889999999999999998

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.54  E-value=1.5e-14  Score=131.75  Aligned_cols=158  Identities=16%  Similarity=0.164  Sum_probs=110.5

Q ss_pred             hhHHHHHHHHhhhcCCccCCCCCcEEEEeccc--cHHHHHHHHh-CCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCc
Q 018970          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGI--GRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHK  212 (348)
Q Consensus       137 ~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~--G~~~~~la~~-~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~  212 (348)
                      ....|+.+.+.....   -....+|||||||+  +..+..++++ .+. .|+++|.|+.|++.|++++...+      ..
T Consensus        61 ~nr~fl~rav~~l~~---~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~------~~  131 (277)
T 3giw_A           61 ANRDWMNRAVAHLAK---EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP------EG  131 (277)
T ss_dssp             HHHHHHHHHHHHHHH---TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS------SS
T ss_pred             HHHHHHHHHHHHhcc---ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC------CC
Confidence            345666666554321   12235899999997  4455556554 232 79999999999999999986521      24


Q ss_pred             ceeEEEcCCCCCCC----C--CCcee-----EEeechhhhcCChhh-HHHHHHHHHHcCCCCcEEEEEecccCCC-c---
Q 018970          213 ATNFFCVPLQDFTP----E--TGRYD-----VIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLKENIARSG-F---  276 (348)
Q Consensus       213 ~i~~~~~d~~~~~~----~--~~~fD-----~Ii~~~~l~~~~~~d-~~~~l~~~~~~LkpgG~lii~~~~~~~~-~---  276 (348)
                      +++|.++|+.++..    +  .+.||     .|+++.+|||+++.+ +..+++++.+.|+|||+|++++...... .   
T Consensus       132 ~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~  211 (277)
T 3giw_A          132 RTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVG  211 (277)
T ss_dssp             EEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHH
T ss_pred             cEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHH
Confidence            69999999988520    1  24455     688999999999744 7899999999999999999987553211 0   


Q ss_pred             ----eecC-CCCceecCHHHHHHHHHhcCCeEEE
Q 018970          277 ----VLDK-EDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       277 ----~~d~-~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                          .+.. ......++.+++..+|.  ||++++
T Consensus       212 ~~~~~~~~~g~p~~~rs~~ei~~~f~--Glelve  243 (277)
T 3giw_A          212 RVAREYAARNMPMRLRTHAEAEEFFE--GLELVE  243 (277)
T ss_dssp             HHHHHHHHTTCCCCCCCHHHHHHTTT--TSEECT
T ss_pred             HHHHHHHhcCCCCccCCHHHHHHHhC--CCcccC
Confidence                0111 11223379999999995  999876

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.54  E-value=1.7e-14  Score=137.06  Aligned_cols=138  Identities=14%  Similarity=0.224  Sum_probs=107.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      .+..+|||||||+|.++..++++++. .++++|+ +.+++.+++            ..++++...|+.+ +.+  .||+|
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~~~--~~D~v  255 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------------NENLNFVGGDMFK-SIP--SADAV  255 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------------CSSEEEEECCTTT-CCC--CCSEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------------CCCcEEEeCccCC-CCC--CceEE
Confidence            34579999999999999999988765 7899999 788875542            1348999999987 544  49999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCC---CcEEEEEecccCCCc----------eecC----CCCceecCHHHHHHHHH
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKP---GGFFVLKENIARSGF----------VLDK----EDRSITRSDFYFKELFS  297 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~Lkp---gG~lii~~~~~~~~~----------~~d~----~~~~~~~s~~~l~~l~~  297 (348)
                      ++.+++||+++++...++++++++|+|   ||.++|.+.......          ..+.    ......++.++|.++++
T Consensus       256 ~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~  335 (358)
T 1zg3_A          256 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIY  335 (358)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHH
T ss_pred             EEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHH
Confidence            999999999976677999999999999   999999876533211          0000    00112368999999999


Q ss_pred             hcCCeEEEEeec
Q 018970          298 RCGLHIYKSKDQ  309 (348)
Q Consensus       298 ~aGf~~v~~~~~  309 (348)
                      ++||++++....
T Consensus       336 ~aGf~~~~~~~~  347 (358)
T 1zg3_A          336 DAGFSSYKITPI  347 (358)
T ss_dssp             HTTCCEEEEEEE
T ss_pred             HcCCCeeEEEec
Confidence            999999987764

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.54  E-value=6.3e-15  Score=128.82  Aligned_cols=108  Identities=16%  Similarity=0.162  Sum_probs=86.6

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--CCCc-eeE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGR-YDV  233 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~-fD~  233 (348)
                      ++.+|||+|||+|.++..++.++...|+++|+|+.|++.|++++...++.    ..++++.+.|+.++..  .+++ ||+
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~  128 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----SEQAEVINQSSLDFLKQPQNQPHFDV  128 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----TTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCC----ccceEEEECCHHHHHHhhccCCCCCE
Confidence            45699999999999999888777768999999999999999988654320    0468999999876532  2468 999


Q ss_pred             EeechhhhcCChhhHHHHHHHH--HHcCCCCcEEEEEecc
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRA--KVGLKPGGFFVLKENI  271 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~--~~~LkpgG~lii~~~~  271 (348)
                      |++..+++ ..  +...+++.+  .++|+|||.+++....
T Consensus       129 I~~~~~~~-~~--~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          129 VFLDPPFH-FN--LAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             EEECCCSS-SC--HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             EEECCCCC-Cc--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            99988854 33  677888888  6789999999997644

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.53  E-value=2.6e-14  Score=130.96  Aligned_cols=131  Identities=17%  Similarity=0.195  Sum_probs=101.7

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      .++.+|||+|||+|.++..++..... .|+++|+|+.+++.|++++...++      .++++.+.|+.+.. +.++||+|
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~------~~v~~~~~d~~~~~-~~~~fD~I  180 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------KNIHILQSDWFSAL-AGQQFAMI  180 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCSTTGGG-TTCCEEEE
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEEcchhhhc-ccCCccEE
Confidence            35679999999999999999876543 799999999999999998765332      26889999987743 24789999


Q ss_pred             eechh-------------hhcCCh----------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970          235 WVQWC-------------IGHLTD----------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY  291 (348)
Q Consensus       235 i~~~~-------------l~~~~~----------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~  291 (348)
                      +++..             ++|.+.          +++..+++.+.++|+|||++++....               .+.+.
T Consensus       181 v~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------~~~~~  245 (276)
T 2b3t_A          181 VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW---------------QQGEA  245 (276)
T ss_dssp             EECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS---------------SCHHH
T ss_pred             EECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---------------hHHHH
Confidence            99843             333321          35678999999999999999986321               24677


Q ss_pred             HHHHHHhcCCeEEEEee
Q 018970          292 FKELFSRCGLHIYKSKD  308 (348)
Q Consensus       292 l~~l~~~aGf~~v~~~~  308 (348)
                      +.++++++||..+....
T Consensus       246 ~~~~l~~~Gf~~v~~~~  262 (276)
T 2b3t_A          246 VRQAFILAGYHDVETCR  262 (276)
T ss_dssp             HHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHCCCcEEEEEe
Confidence            99999999998766543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.53  E-value=1.7e-13  Score=121.57  Aligned_cols=143  Identities=13%  Similarity=0.060  Sum_probs=102.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~  229 (348)
                      +.++.+|||+|||+|.++..++... . ..|+++|+|+.|++.+++++..        ..++++.+.|+.+..   ...+
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~--------~~~v~~~~~d~~~~~~~~~~~~  142 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--------RRNIVPILGDATKPEEYRALVP  142 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------CTTEEEEECCTTCGGGGTTTCC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc--------cCCCEEEEccCCCcchhhcccC
Confidence            5677899999999999999998773 2 4799999999999999998865        257899999998732   1235


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      +||+|++...    ..+....+++++.++|||||.+++......  .  +..........+++.++ .++ |++++....
T Consensus       143 ~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~--~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~  212 (227)
T 1g8a_A          143 KVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIAVKSRS--I--DVTKEPEQVFREVEREL-SEY-FEVIERLNL  212 (227)
T ss_dssp             CEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEEEEGGG--T--CTTSCHHHHHHHHHHHH-HTT-SEEEEEEEC
T ss_pred             CceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEEEecCC--C--CCCCChhhhhHHHHHHH-Hhh-ceeeeEecc
Confidence            8999997654    122345669999999999999999721111  0  10011112344566666 777 999988776


Q ss_pred             CCCCcc
Q 018970          310 KGLPEE  315 (348)
Q Consensus       310 ~~~~~~  315 (348)
                      ..+...
T Consensus       213 ~~~~~~  218 (227)
T 1g8a_A          213 EPYEKD  218 (227)
T ss_dssp             TTTSSS
T ss_pred             CcccCC
Confidence            655443

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.53  E-value=3.1e-14  Score=122.08  Aligned_cols=109  Identities=17%  Similarity=0.125  Sum_probs=89.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCc-ceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+|||+|||+|.++..++.. ...|+++|+|+.+++.+++++...++     .. ++++...|+.+... .++||+
T Consensus        50 ~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~d~~~~~~-~~~~D~  122 (194)
T 1dus_A           50 VDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNL-----DNYDIRVVHSDLYENVK-DRKYNK  122 (194)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC-----TTSCEEEEECSTTTTCT-TSCEEE
T ss_pred             cCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECchhcccc-cCCceE
Confidence            456789999999999999999877 44799999999999999998765432     11 38999999887443 478999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      |+++.++++. .++...+++++.++|+|||.+++....
T Consensus       123 v~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          123 IITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             EEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             EEECCCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            9999888763 246789999999999999999998743

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.53  E-value=2.5e-14  Score=125.24  Aligned_cols=102  Identities=19%  Similarity=0.085  Sum_probs=87.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|++++...++      .++++...|+.+.....++||+|
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~D~i  147 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDL------HNVSTRHGDGWQGWQARAPFDAI  147 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCC------CceEEEECCcccCCccCCCccEE
Confidence            5678899999999999999998874 4699999999999999998865433      36899999998766556799999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      ++..+++|+++        .+.++|||||++++....
T Consensus       148 ~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          148 IVTAAPPEIPT--------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred             EEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence            99999999883        588999999999998644

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.53  E-value=1.8e-14  Score=136.69  Aligned_cols=106  Identities=17%  Similarity=0.157  Sum_probs=89.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||||||+|.++..+++.+...|+++|+| .|++.|++++...++     ..++++..+|+.+++.+.++||+|+
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~Ii  138 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKL-----DHVVTIIKGKVEEVELPVEKVDIII  138 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTC-----TTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCC-----CCcEEEEECcHHHccCCCCceEEEE
Confidence            4567999999999999999998866689999999 599999998876544     3459999999999987778999999


Q ss_pred             echhhhcCC-hhhHHHHHHHHHHcCCCCcEEEE
Q 018970          236 VQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       236 ~~~~l~~~~-~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      +.++.+++. ..++..+++.+.++|||||.++.
T Consensus       139 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          139 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            977655442 23788999999999999999875

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.52  E-value=2.2e-14  Score=136.03  Aligned_cols=107  Identities=16%  Similarity=0.137  Sum_probs=91.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++..+...|+++|+|+ |++.|++++...++     ..++++...|+.+++.+ ++||+|
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l-----~~~v~~~~~d~~~~~~~-~~~D~I  120 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL-----TDRIVVIPGKVEEVSLP-EQVDII  120 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTC-----TTTEEEEESCTTTCCCS-SCEEEE
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCC-----CCcEEEEEcchhhCCCC-CceeEE
Confidence            356789999999999999999877666899999996 89999988765443     35799999999988765 689999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      ++..+++|+..++....+..+.++|||||.+++.
T Consensus       121 vs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          121 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            9999999887767788889999999999999864

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.52  E-value=4.2e-15  Score=129.87  Aligned_cols=132  Identities=13%  Similarity=0.004  Sum_probs=83.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC-----C
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-----G  229 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~  229 (348)
                      .++.+|||+|||+|.++..++..+.. .|+++|+|+.|++.|++++...+       .++++.+.|+.+ +.+.     +
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~-~~~~~~~~~~  100 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG-------AVVDWAAADGIE-WLIERAERGR  100 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------------CCHHHHHH-HHHHHHHTTC
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC-------CceEEEEcchHh-hhhhhhhccC
Confidence            56789999999999999999988654 79999999999999999876532       156777777766 3222     7


Q ss_pred             ceeEEeechhhhcCC------hhh------------------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCce
Q 018970          230 RYDVIWVQWCIGHLT------DDD------------------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSI  285 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~------~~d------------------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~  285 (348)
                      +||+|+++..+++..      ...                  +..+++++.++|||||.+++.+...             
T Consensus       101 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------  167 (215)
T 4dzr_A          101 PWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH-------------  167 (215)
T ss_dssp             CBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-------------
T ss_pred             cccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-------------
Confidence            899999975554322      111                  1788999999999999954443211             


Q ss_pred             ecCHHHHHHHHH--hcCCeEEEEeec
Q 018970          286 TRSDFYFKELFS--RCGLHIYKSKDQ  309 (348)
Q Consensus       286 ~~s~~~l~~l~~--~aGf~~v~~~~~  309 (348)
                       ...+.+.++++  +.||..+.....
T Consensus       168 -~~~~~~~~~l~~~~~gf~~~~~~~~  192 (215)
T 4dzr_A          168 -NQADEVARLFAPWRERGFRVRKVKD  192 (215)
T ss_dssp             -SCHHHHHHHTGGGGGGTEECCEEEC
T ss_pred             -ccHHHHHHHHHHhhcCCceEEEEEe
Confidence             24567889999  999987775543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.52  E-value=1.2e-14  Score=133.18  Aligned_cols=112  Identities=16%  Similarity=0.158  Sum_probs=86.1

Q ss_pred             CCCcEEEEeccccH----HHHHHHHhCC-----CcEEEEcCCHHHHHHHHHHhCCC----CCC---------------C-
Q 018970          157 QHLVALDCGSGIGR----ITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPE----NHM---------------A-  207 (348)
Q Consensus       157 ~~~~VLDvGcG~G~----~~~~la~~~~-----~~v~~vD~S~~~l~~a~~~~~~~----~~~---------------~-  207 (348)
                      ++.+|||+|||+|.    ++..|++...     .+|+|+|+|+.|++.|++..-..    ++.               . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35799999999998    5555655411     16999999999999999864100    000               0 


Q ss_pred             -----cCCCcceeEEEcCCCCCCCC-CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          208 -----PDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       208 -----~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                           .....++.|.+.|+.+.+++ .++||+|+|.++++|++++....++++++++|+|||+|++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                 00113689999999885443 47899999999999999877899999999999999999985

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.52  E-value=9.4e-15  Score=129.56  Aligned_cols=108  Identities=17%  Similarity=0.140  Sum_probs=86.0

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-C--CCCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T--PETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~fD  232 (348)
                      ++.+|||||||+|.++..++...+. .|+|+|+|+.|++.|++++...++      .++.+.++|+.++ +  +++++||
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l------~nv~~~~~Da~~~l~~~~~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL------SNLRVMCHDAVEVLHKMIPDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC------SSEEEECSCHHHHHHHHSCTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHcCCCChh
Confidence            4568999999999999999988765 799999999999999998765432      4689999998774 2  4568999


Q ss_pred             EEeechhhhcCChhhH------HHHHHHHHHcCCCCcEEEEEec
Q 018970          233 VIWVQWCIGHLTDDDF------VSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~------~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      .|++.....+......      ..+++.+.++|||||.|++...
T Consensus       108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence            9998754443332221      2599999999999999999864

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.52  E-value=6.2e-14  Score=119.22  Aligned_cols=122  Identities=13%  Similarity=0.131  Sum_probs=98.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||+|||+|.++..++. ....|+++|+|+.+++.+++++...++      .++++.+.|+.+ +.+.++||+|
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-~~~~~~~D~i  104 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI------KNCQIIKGRAED-VLDKLEFNKA  104 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC------CSEEEEESCHHH-HGGGCCCSEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC------CcEEEEECCccc-cccCCCCcEE
Confidence            45677999999999999999987 444799999999999999998865432      358899999877 4444689999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      ++..+    .  ++..+++.+.++  |||.+++.....              .+...+.+.+++.||.+...
T Consensus       105 ~~~~~----~--~~~~~l~~~~~~--~gG~l~~~~~~~--------------~~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          105 FIGGT----K--NIEKIIEILDKK--KINHIVANTIVL--------------ENAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             EECSC----S--CHHHHHHHHHHT--TCCEEEEEESCH--------------HHHHHHHHHHHHTTCEEEEE
T ss_pred             EECCc----c--cHHHHHHHHhhC--CCCEEEEEeccc--------------ccHHHHHHHHHHcCCeEEEE
Confidence            99888    2  677899999998  999999987432              12456889999999876654

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.52  E-value=6.1e-14  Score=124.72  Aligned_cols=129  Identities=14%  Similarity=0.007  Sum_probs=106.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      +.++.+|||||||+|.++..++..++. .|+++|+++.+++.|++++...++     ..++++..+|+.+...+...||+
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl-----~~~I~~~~gD~l~~~~~~~~~D~   93 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL-----TSKIDVRLANGLSAFEEADNIDT   93 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCCGGGCCCE
T ss_pred             CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhhccccccccCE
Confidence            456789999999999999999987654 799999999999999999887655     45699999998876544347999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      |++.++...    -+..++....+.|+++|.|++..+.                ..+.+++++.+.||.+++...
T Consensus        94 IviaGmGg~----lI~~IL~~~~~~l~~~~~lIlqp~~----------------~~~~lr~~L~~~Gf~i~~E~l  148 (230)
T 3lec_A           94 ITICGMGGR----LIADILNNDIDKLQHVKTLVLQPNN----------------REDDLRKWLAANDFEIVAEDI  148 (230)
T ss_dssp             EEEEEECHH----HHHHHHHHTGGGGTTCCEEEEEESS----------------CHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEEeCCchH----HHHHHHHHHHHHhCcCCEEEEECCC----------------ChHHHHHHHHHCCCEEEEEEE
Confidence            987655442    4678999999999999999998742                256799999999999998664

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.52  E-value=1.6e-14  Score=132.98  Aligned_cols=139  Identities=13%  Similarity=0.026  Sum_probs=94.2

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCCceeE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV  233 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~  233 (348)
                      ++.+|||+|||||.++..+++.+...|+++|+|+.|++.+.++...          ...+...++..+.   .+..+||+
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~r----------v~~~~~~ni~~l~~~~l~~~~fD~  154 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDR----------VRSMEQYNFRYAEPVDFTEGLPSF  154 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTT----------EEEECSCCGGGCCGGGCTTCCCSE
T ss_pred             cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcc----------cceecccCceecchhhCCCCCCCE
Confidence            4669999999999999999988776899999999999986543211          0111122332222   22245999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc-cCCC-ceecCC----CCcee-cCHHHHHHHHHhcCCeEEEE
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI-ARSG-FVLDKE----DRSIT-RSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~-~~~~-~~~d~~----~~~~~-~s~~~l~~l~~~aGf~~v~~  306 (348)
                      |++..+++++     ..+|.++.++|||||.+++.... .+.+ ...+..    +...+ .+.+++.++++++||.+...
T Consensus       155 v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~  229 (291)
T 3hp7_A          155 ASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGL  229 (291)
T ss_dssp             EEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred             EEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            9998888754     47999999999999999986211 1111 011110    11112 46778999999999998886


Q ss_pred             eecC
Q 018970          307 KDQK  310 (348)
Q Consensus       307 ~~~~  310 (348)
                      ...+
T Consensus       230 ~~sp  233 (291)
T 3hp7_A          230 DFSP  233 (291)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            6543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.51  E-value=1.1e-13  Score=120.77  Aligned_cols=121  Identities=12%  Similarity=0.039  Sum_probs=95.5

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ++.+|||+|||+|.++..++...+ ..|+++|+|+.+++.+++++...++      .++++...|+.+++. .++||+|+
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~-~~~~D~i~  137 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQSRVEEFPS-EPPFDGVI  137 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEECCTTTSCC-CSCEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEecchhhCCc-cCCcCEEE
Confidence            357999999999999999987753 3799999999999999998765432      348999999988763 37899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      ++..    .  ++..+++.+.++|+|||.+++....               ...+++.++++  ||+++...
T Consensus       138 ~~~~----~--~~~~~l~~~~~~L~~gG~l~~~~~~---------------~~~~~~~~~~~--g~~~~~~~  186 (207)
T 1jsx_A          138 SRAF----A--SLNDMVSWCHHLPGEQGRFYALKGQ---------------MPEDEIALLPE--EYQVESVV  186 (207)
T ss_dssp             CSCS----S--SHHHHHHHHTTSEEEEEEEEEEESS---------------CCHHHHHTSCT--TEEEEEEE
T ss_pred             Eecc----C--CHHHHHHHHHHhcCCCcEEEEEeCC---------------CchHHHHHHhc--CCceeeee
Confidence            8542    2  5779999999999999999997421               23455666655  89887744

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.51  E-value=4.5e-14  Score=129.33  Aligned_cols=126  Identities=15%  Similarity=0.143  Sum_probs=100.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CC-CcEEEEcCCHHHHHHHHHHhCCC-CCCCcCCCcceeEEEcCCCCCCCCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFTPETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~-~~v~~vD~S~~~l~~a~~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~f  231 (348)
                      +.++.+|||+|||+|.++..++.. .. ..|+++|+|+.+++.|++++... +      ..++++.+.|+.+ ..++++|
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g------~~~v~~~~~d~~~-~~~~~~f  180 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD------IGNVRTSRSDIAD-FISDQMY  180 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC------CTTEEEECSCTTT-CCCSCCE
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC------CCcEEEEECchhc-cCcCCCc
Confidence            567789999999999999999877 22 37999999999999999988653 3      2468999999987 3344789


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      |+|++     +++  +...+++++.++|||||.+++.....              ...+.+.+.+++.||..++...
T Consensus       181 D~Vi~-----~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~--------------~~~~~~~~~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          181 DAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYLPNF--------------DQSEKTVLSLSASGMHHLETVE  236 (275)
T ss_dssp             EEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEESSH--------------HHHHHHHHHSGGGTEEEEEEEE
T ss_pred             cEEEE-----cCc--CHHHHHHHHHHHcCCCCEEEEEeCCH--------------HHHHHHHHHHHHCCCeEEEEEE
Confidence            99998     455  45689999999999999999987432              1235677888899999887554

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.51  E-value=3.4e-14  Score=133.65  Aligned_cols=106  Identities=16%  Similarity=0.178  Sum_probs=87.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||||||+|.++..+++.+...|+++|+| .|++.|++++...++     ..++++...|+.+++.+.++||+|+
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~D~Iv  110 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGF-----SDKITLLRGKLEDVHLPFPKVDIII  110 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTC-----TTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCC-----CCCEEEEECchhhccCCCCcccEEE
Confidence            4567999999999999999987766689999999 699999998765443     3568999999999877667999999


Q ss_pred             echhhhcCC-hhhHHHHHHHHHHcCCCCcEEEE
Q 018970          236 VQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       236 ~~~~l~~~~-~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      +.++.+++. ...+..++..+.++|||||.++.
T Consensus       111 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            986555443 23678899999999999999974

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.51  E-value=5.4e-14  Score=134.25  Aligned_cols=112  Identities=15%  Similarity=0.016  Sum_probs=88.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhC-------CCCCCCcCCCcceeEEEcCCCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLA-------PENHMAPDMHKATNFFCVPLQDFTP  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~-------~~~~~~~~~~~~i~~~~~d~~~~~~  226 (348)
                      +.++.+|||||||+|.++..++..... .|+|+|+|+.|++.|+++..       ..|+.    ..+++|.++|+.++++
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~----~~rVefi~GD~~~lp~  246 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK----HAEYTLERGDFLSEEW  246 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC----CCEEEEEECCTTSHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC----CCCeEEEECcccCCcc
Confidence            678889999999999999999866444 59999999999999987531       11110    1479999999998765


Q ss_pred             CC--CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC
Q 018970          227 ET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR  273 (348)
Q Consensus       227 ~~--~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~  273 (348)
                      .+  ..||+|+++..++ .  .+....|+++.++|||||.|++.+.+..
T Consensus       247 ~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          247 RERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             HHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred             ccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccC
Confidence            32  4799999987653 2  3788899999999999999999875543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.50  E-value=7.5e-15  Score=131.43  Aligned_cols=142  Identities=15%  Similarity=0.004  Sum_probs=89.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEE-cCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~I  234 (348)
                      .++.+|||||||+|.++..+++.+...|+++|+|+.|++.++++.......   ...++.+.. .++....+....||++
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~D~v  112 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVM---EQFNFRNAVLADFEQGRPSFTSIDVS  112 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEE---CSCCGGGCCGGGCCSCCCSEEEECCS
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcccccc---ccceEEEeCHhHcCcCCCCEEEEEEE
Confidence            345699999999999999999887668999999999999988764321000   001222222 2332211122345555


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc-cCCCc-eecC-----CCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI-ARSGF-VLDK-----EDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~-~~~~~-~~d~-----~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      +++     +     ..+++++.++|||||.+++.... ...+. ....     .......+.+++.++++++||+++...
T Consensus       113 ~~~-----l-----~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~  182 (232)
T 3opn_A          113 FIS-----L-----DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT  182 (232)
T ss_dssp             SSC-----G-----GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             hhh-----H-----HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence            543     2     46999999999999999986310 00000 0110     011112477889999999999988876


Q ss_pred             ecC
Q 018970          308 DQK  310 (348)
Q Consensus       308 ~~~  310 (348)
                      ...
T Consensus       183 ~~p  185 (232)
T 3opn_A          183 FSP  185 (232)
T ss_dssp             ECS
T ss_pred             Ecc
Confidence            544

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.50  E-value=1.3e-13  Score=122.35  Aligned_cols=128  Identities=15%  Similarity=0.055  Sum_probs=103.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD  232 (348)
                      +.++.+|||||||+|.++..++..++. .|+++|+++.+++.|++++...++     ..++++...|..+ ++.. ..||
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----~~~i~~~~~d~l~~l~~~-~~~D   86 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL-----KEKIQVRLANGLAAFEET-DQVS   86 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCCGG-GCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEECchhhhcccC-cCCC
Confidence            456789999999999999999987654 799999999999999999887655     3469999999854 4322 2699


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      +|++.++-.    +-+..++..+.+.|+|+|+|++..+.                ..+.+++.+.+.||.+++...
T Consensus        87 ~IviaG~Gg----~~i~~Il~~~~~~L~~~~~lVlq~~~----------------~~~~vr~~L~~~Gf~i~~e~l  142 (225)
T 3kr9_A           87 VITIAGMGG----RLIARILEEGLGKLANVERLILQPNN----------------REDDLRIWLQDHGFQIVAESI  142 (225)
T ss_dssp             EEEEEEECH----HHHHHHHHHTGGGCTTCCEEEEEESS----------------CHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEEEcCCCh----HHHHHHHHHHHHHhCCCCEEEEECCC----------------CHHHHHHHHHHCCCEEEEEEE
Confidence            999765432    24678999999999999999997641                246789999999999998653

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.49  E-value=7.7e-16  Score=137.90  Aligned_cols=141  Identities=13%  Similarity=0.040  Sum_probs=103.7

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      ++.+|||+|||+|.++..++..+ ..|+++|+|+.|++.|++++...++     ..++++.++|+.+++ ++++||+|++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~-~~~~~D~v~~  150 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGI-----ADKIEFICGDFLLLA-SFLKADVVFL  150 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHG-GGCCCSEEEE
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCC-----CcCeEEEECChHHhc-ccCCCCEEEE
Confidence            56899999999999999999876 4699999999999999998865433     247999999998876 3479999999


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC-CceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS-GFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~-~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      +.++++..  +....+.++.++|+|||.+++....... .....   .....+.+.+..++...|.-.++....
T Consensus       151 ~~~~~~~~--~~~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~~---lp~~~~~~~~~~~l~~~g~~~i~~~~~  219 (241)
T 3gdh_A          151 SPPWGGPD--YATAETFDIRTMMSPDGFEIFRLSKKITNNIVYF---LPRNADIDQVASLAGPGGQVEIEQNFL  219 (241)
T ss_dssp             CCCCSSGG--GGGSSSBCTTTSCSSCHHHHHHHHHHHCSCEEEE---EETTBCHHHHHHTTCTTCCEEEEEEEE
T ss_pred             CCCcCCcc--hhhhHHHHHHhhcCCcceeHHHHHHhhCCceEEE---CCCCCCHHHHHHHhccCCCEEEEehhh
Confidence            99999877  4445778899999999997664311100 00000   000135667888888877666554443

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.49  E-value=1.1e-13  Score=124.04  Aligned_cols=129  Identities=12%  Similarity=-0.002  Sum_probs=104.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      +.++.+|||||||+|.++..++..++. .|+++|+++.+++.|++++...++     ..++++..+|+.+...+..+||+
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----~~~I~v~~gD~l~~~~~~~~~D~   93 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL-----TEQIDVRKGNGLAVIEKKDAIDT   93 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCCGGGCCCE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEecchhhccCccccccE
Confidence            456789999999999999999987654 799999999999999999877654     35699999998775544335999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      |++.++-.    +-+..++....+.|+++|+|++..+.                ..+.+++.+.+.||.+++...
T Consensus        94 IviagmGg----~lI~~IL~~~~~~L~~~~~lIlq~~~----------------~~~~lr~~L~~~Gf~i~~E~l  148 (244)
T 3gnl_A           94 IVIAGMGG----TLIRTILEEGAAKLAGVTKLILQPNI----------------AAWQLREWSEQNNWLITSEAI  148 (244)
T ss_dssp             EEEEEECH----HHHHHHHHHTGGGGTTCCEEEEEESS----------------CHHHHHHHHHHHTEEEEEEEE
T ss_pred             EEEeCCch----HHHHHHHHHHHHHhCCCCEEEEEcCC----------------ChHHHHHHHHHCCCEEEEEEE
Confidence            98755433    24678999999999999999998742                256789999999999988653

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.49  E-value=2.8e-14  Score=121.45  Aligned_cols=108  Identities=13%  Similarity=0.108  Sum_probs=85.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~I  234 (348)
                      .++.+|||+|||+|.++..++..+...|+++|+|+.|++.|++++...++     ..++++...|+.++ +...+.||+|
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~fD~i  104 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKMEAERAIDCLTGRFDLV  104 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSCHHHHHHHBCSCEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECcHHHhHHhhcCCCCEE
Confidence            45679999999999999999877555899999999999999999876433     34689999998773 3223679999


Q ss_pred             eechhhhcCChhhHHHHHHHHH--HcCCCCcEEEEEecc
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKENI  271 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~--~~LkpgG~lii~~~~  271 (348)
                      +++.+++.   .....+++.+.  ++|+|||.+++....
T Consensus       105 ~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          105 FLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             EECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             EECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            99877643   24566777776  999999999997644

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.49  E-value=1.3e-13  Score=122.46  Aligned_cols=100  Identities=20%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++..+ ..|+++|+|+.+++.+++++...       + ++++...|+.+.....++||+|
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~-------~-~v~~~~~d~~~~~~~~~~fD~v  138 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY-------N-NIKLILGDGTLGYEEEKPYDRV  138 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC-------S-SEEEEESCGGGCCGGGCCEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhc-------C-CeEEEECCcccccccCCCccEE
Confidence            4677899999999999999999877 56999999999999999998763       2 6889999987733334789999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      ++..+++|+.        ..+.++|+|||.+++....
T Consensus       139 ~~~~~~~~~~--------~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          139 VVWATAPTLL--------CKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             EESSBBSSCC--------HHHHHTEEEEEEEEEEECS
T ss_pred             EECCcHHHHH--------HHHHHHcCCCcEEEEEEcC
Confidence            9999999987        2588999999999998654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.49  E-value=8.5e-14  Score=133.21  Aligned_cols=111  Identities=19%  Similarity=0.151  Sum_probs=87.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      .++.+|||+|||+|.++..++..++ .+|+++|+|+.|++.|++++...++.   ...+++|...|+.+. .++++||+|
T Consensus       221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~---~~~~v~~~~~D~~~~-~~~~~fD~I  296 (375)
T 4dcm_A          221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNALSG-VEPFRFNAV  296 (375)
T ss_dssp             SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGG---GGGGEEEEECSTTTT-CCTTCEEEE
T ss_pred             cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCC---cCceEEEEechhhcc-CCCCCeeEE
Confidence            4557999999999999999998864 37999999999999999988654321   012578899998873 345789999


Q ss_pred             eechhhhcC---ChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          235 WVQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       235 i~~~~l~~~---~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +++.++|+.   .+.....+++++.++|||||.+++..+
T Consensus       297 i~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n  335 (375)
T 4dcm_A          297 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  335 (375)
T ss_dssp             EECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence            999999863   333455789999999999999999764

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.49  E-value=7e-14  Score=126.12  Aligned_cols=128  Identities=18%  Similarity=0.138  Sum_probs=101.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-C-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      ..++.+|||+|||+|.++..++.. + ...|+++|+|+.+++.|++++...++     ..++++...|+.+. .++++||
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-~~~~~~D  164 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----DDRVTIKLKDIYEG-IEEENVD  164 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC-----TTTEEEECSCGGGC-CCCCSEE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC-----CCceEEEECchhhc-cCCCCcC
Confidence            567889999999999999999987 4 23799999999999999998865433     34489999998865 3457899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcC--CeEEEEeec
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCG--LHIYKSKDQ  309 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aG--f~~v~~~~~  309 (348)
                      +|++.     .+  +...+++++.++|+|||.+++.....              .....+.+.+++.|  |..++..+.
T Consensus       165 ~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~~--------------~~~~~~~~~l~~~g~~f~~~~~~e~  222 (255)
T 3mb5_A          165 HVILD-----LP--QPERVVEHAAKALKPGGFFVAYTPCS--------------NQVMRLHEKLREFKDYFMKPRTINV  222 (255)
T ss_dssp             EEEEC-----SS--CGGGGHHHHHHHEEEEEEEEEEESSH--------------HHHHHHHHHHHHTGGGBSCCEEECC
T ss_pred             EEEEC-----CC--CHHHHHHHHHHHcCCCCEEEEEECCH--------------HHHHHHHHHHHHcCCCccccEEEEE
Confidence            99983     34  45679999999999999999976432              12456788899999  987775543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.49  E-value=5.2e-14  Score=130.99  Aligned_cols=141  Identities=13%  Similarity=0.114  Sum_probs=99.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--CCCcee
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~fD  232 (348)
                      .++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.|++++.....  .....++++...|+.++..  .+++||
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~~~~~~~~~fD  171 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR--SLADPRATVRVGDGLAFVRQTPDNTYD  171 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhc--ccCCCcEEEEECcHHHHHHhccCCcee
Confidence            456799999999999999998653 34899999999999999998631000  0003568999999877542  357899


Q ss_pred             EEeechhhhcCChhhH--HHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          233 VIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~--~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      +|++....++.+...+  ..+++.+.++|||||++++.....   +       ........+.+.++++||..+....
T Consensus       172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~---~-------~~~~~~~~~~~~l~~~GF~~v~~~~  239 (304)
T 3bwc_A          172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI---W-------LDLELIEKMSRFIRETGFASVQYAL  239 (304)
T ss_dssp             EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT---T-------TCHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred             EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc---c-------cchHHHHHHHHHHHhCCCCcEEEEE
Confidence            9999766655442222  689999999999999999874321   1       0012456788899999999777543

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.48  E-value=4.5e-14  Score=133.59  Aligned_cols=106  Identities=20%  Similarity=0.232  Sum_probs=88.4

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ++.+|||+|||+|.++..++..++. +|+++|+|+.|++.+++++...+       ..+.+...|+.+..  +++||+|+
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-------~~~~~~~~d~~~~~--~~~fD~Iv  266 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG-------VEGEVFASNVFSEV--KGRFDMII  266 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT-------CCCEEEECSTTTTC--CSCEEEEE
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-------CCCEEEEccccccc--cCCeeEEE
Confidence            4569999999999999999988764 79999999999999999876532       23567888887654  47899999


Q ss_pred             echhhhcC---ChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          236 VQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       236 ~~~~l~~~---~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      ++.++|+.   ..++...+++++.++|||||.+++..+.
T Consensus       267 ~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          267 SNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             ECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             ECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            99999863   2346789999999999999999998653

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.48  E-value=4.2e-14  Score=123.63  Aligned_cols=106  Identities=13%  Similarity=0.113  Sum_probs=85.2

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCCCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~Ii  235 (348)
                      ++.+|||+|||+|.++..++.++...|+++|+|+.|++.|++++...++      .++++.+.|+.+ ++...++||+|+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~D~~~~~~~~~~~fD~V~  127 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNAMSFLAQKGTPHNIVF  127 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHhhcCCCCCEEE
Confidence            4579999999999999998878776899999999999999998865432      368999999876 344456899999


Q ss_pred             echhhhcCChhhHHHHHHHHHH--cCCCCcEEEEEecc
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKENI  271 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~--~LkpgG~lii~~~~  271 (348)
                      +...++ ..  +...+++.+.+  +|+|||.+++....
T Consensus       128 ~~~p~~-~~--~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          128 VDPPFR-RG--LLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             ECCSSS-TT--THHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             ECCCCC-CC--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            987754 33  56678888866  59999999987643

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.48  E-value=1.5e-13  Score=123.88  Aligned_cols=127  Identities=18%  Similarity=0.186  Sum_probs=100.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-C-CCcEEEEcCCHHHHHHHHHHhCCC-CCCCcCCCcceeEEEcCCCCCCCCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFTPETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~-~~~v~~vD~S~~~l~~a~~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~f  231 (348)
                      +.++.+|||+|||+|.++..++.. + ...|+++|+|+.+++.|++++... +      ..++++...|+.+.+.++++|
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g------~~~v~~~~~d~~~~~~~~~~~  167 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ------VENVRFHLGKLEEAELEEAAY  167 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------CCCEEEEESCGGGCCCCTTCE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC------CCCEEEEECchhhcCCCCCCc
Confidence            567789999999999999999987 3 237999999999999999987542 2      246899999998876666789


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      |+|++.     .+  +...+++++.++|+|||.+++.....              .....+.+.+++.||..++..+
T Consensus       168 D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~~--------------~~~~~~~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          168 DGVALD-----LM--EPWKVLEKAALALKPDRFLVAYLPNI--------------TQVLELVRAAEAHPFRLERVLE  223 (258)
T ss_dssp             EEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESCH--------------HHHHHHHHHHTTTTEEEEEEEE
T ss_pred             CEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCCH--------------HHHHHHHHHHHHCCCceEEEEE
Confidence            999983     34  45589999999999999999987432              1234567778889999877554

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.48  E-value=5.2e-15  Score=133.71  Aligned_cols=145  Identities=13%  Similarity=-0.039  Sum_probs=95.9

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC---CCC---CC
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPE---TG  229 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~---~~  229 (348)
                      ++.+|||+|||+|.++..++.+.. .+|+++|+|+.|++.|++++...++     ..++++.++|+.+.   +.+   ++
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~~  139 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----SDLIKVVKVPQKTLLMDALKEESEI  139 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC-----CccEEEEEcchhhhhhhhhhcccCC
Confidence            567999999999999998887642 3799999999999999998865433     33589999997652   222   25


Q ss_pred             ceeEEeechhhhcCCh-------------hhHHHHHHHHHHcCCCCcEEEEEecccC--------CCceecCCCCceecC
Q 018970          230 RYDVIWVQWCIGHLTD-------------DDFVSFFKRAKVGLKPGGFFVLKENIAR--------SGFVLDKEDRSITRS  288 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~-------------~d~~~~l~~~~~~LkpgG~lii~~~~~~--------~~~~~d~~~~~~~~s  288 (348)
                      +||+|+++..+++...             +....++..++++|||||.+.+.+....        .++....  .....+
T Consensus       140 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~--~~~~~~  217 (254)
T 2h00_A          140 IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCM--LGKKCS  217 (254)
T ss_dssp             CBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEE--ESSTTS
T ss_pred             cccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEEC--CCChhH
Confidence            8999999876665430             0123567889999999998877542211        1111100  001123


Q ss_pred             HHHHHHHHHhcCCeEEEEee
Q 018970          289 DFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       289 ~~~l~~l~~~aGf~~v~~~~  308 (348)
                      .+.+.++++++||..++...
T Consensus       218 ~~~~~~~l~~~Gf~~v~~~~  237 (254)
T 2h00_A          218 LAPLKEELRIQGVPKVTYTE  237 (254)
T ss_dssp             HHHHHHHHHHTTCSEEEEEE
T ss_pred             HHHHHHHHHHcCCCceEEEE
Confidence            46789999999999877554

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.47  E-value=1.4e-13  Score=124.24  Aligned_cols=107  Identities=18%  Similarity=0.161  Sum_probs=85.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CC--CCCc
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TP--ETGR  230 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~--~~~~  230 (348)
                      .++.+|||||||+|..+..++....  ..|+++|+|+.+++.|++++...++     ..++++..+|+.+. +.  ..++
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~~l~~~~~~~~  136 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV-----DQRVTLREGPALQSLESLGECPA  136 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHTCCSCCC
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHhcCCCCC
Confidence            3567999999999999999997753  3799999999999999999876544     35799999988662 22  1258


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                      ||+|++...     ..+...+++++.++|||||+|++.+...
T Consensus       137 fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~  173 (248)
T 3tfw_A          137 FDLIFIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR  173 (248)
T ss_dssp             CSEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred             eEEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence            999998553     2356789999999999999998876543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.47  E-value=3.6e-14  Score=121.52  Aligned_cols=108  Identities=16%  Similarity=0.117  Sum_probs=84.9

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC----CCCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~f  231 (348)
                      .++.+|||+|||+|.++..++..+...|+++|+|+.|++.|++++...++     ..++++...|+.+...    ..++|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~f  117 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----PEKFEVRKMDANRALEQFYEEKLQF  117 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-----CcceEEEECcHHHHHHHHHhcCCCC
Confidence            45679999999999999998876656899999999999999998765332     3468999999876421    14789


Q ss_pred             eEEeechhhhcCChhhHHHHHHHH--HHcCCCCcEEEEEecc
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRA--KVGLKPGGFFVLKENI  271 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~--~~~LkpgG~lii~~~~  271 (348)
                      |+|+++.+++..   +...+++.+  .++|+|||.+++....
T Consensus       118 D~i~~~~~~~~~---~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          118 DLVLLDPPYAKQ---EIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             EEEEECCCGGGC---CHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CEEEECCCCCch---hHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            999998886532   345666766  8899999999987643

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.47  E-value=1e-13  Score=124.22  Aligned_cols=115  Identities=11%  Similarity=0.092  Sum_probs=81.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CC--CCCCc
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT--PETGR  230 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~~  230 (348)
                      ..++.+|||||||+|.++..++...+. .|+|+|+|+.|++.|++++............++.+.++|+.+ ++  +++++
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~  123 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ  123 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence            345678999999999999999877654 799999999999999876531000000002579999999987 54  55689


Q ss_pred             eeEEeechhhhcCChhh------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          231 YDVIWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ||.|++...-.+.....      ...+++++.++|||||.|++..
T Consensus       124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t  168 (235)
T 3ckk_A          124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT  168 (235)
T ss_dssp             EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence            99998764432221000      1479999999999999999865

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.47  E-value=7.8e-14  Score=137.55  Aligned_cols=106  Identities=16%  Similarity=0.138  Sum_probs=90.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++..+..+|+++|+|+ |++.|++++...++     ..++++...|+.+++.+ ++||+|
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl-----~~~v~~~~~d~~~~~~~-~~fD~I  228 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL-----TDRIVVIPGKVEEVSLP-EQVDII  228 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTC-----TTTEEEEESCTTTCCCS-SCEEEE
T ss_pred             hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCC-----CCcEEEEECchhhCccC-CCeEEE
Confidence            345679999999999999988876555899999998 99999988766543     35799999999987655 689999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      +++.+++|+..++....+..+.++|||||.+++
T Consensus       229 vs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          229 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             ECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             EEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            999988888766777888899999999999986

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.46  E-value=8.2e-14  Score=125.61  Aligned_cols=111  Identities=14%  Similarity=0.070  Sum_probs=86.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHh--CC-CcEEEEcCCHHHHHHHHHHhCCC---CCCCcCCCcc----------------
Q 018970          156 NQHLVALDCGSGIGRITKNLLIR--YF-NEVDLLEPVSHFLDAARESLAPE---NHMAPDMHKA----------------  213 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~--~~-~~v~~vD~S~~~l~~a~~~~~~~---~~~~~~~~~~----------------  213 (348)
                      .++.+|||+|||+|.++..++..  .. .+|+++|+|+.|++.|++++...   ++     ..+                
T Consensus        50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  124 (250)
T 1o9g_A           50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL-----TARELERREQSERFGKPSY  124 (250)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH-----HHHHHHHHHHHHHHCCHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc-----cccchhhhhhhhhcccccc
Confidence            35679999999999999999876  32 27999999999999999887542   11     011                


Q ss_pred             ---------ee-------------EEEcCCCCCCC-----CCCceeEEeechhhhcCCh-------hhHHHHHHHHHHcC
Q 018970          214 ---------TN-------------FFCVPLQDFTP-----ETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGL  259 (348)
Q Consensus       214 ---------i~-------------~~~~d~~~~~~-----~~~~fD~Ii~~~~l~~~~~-------~d~~~~l~~~~~~L  259 (348)
                               ++             +.+.|+.+...     ...+||+|+++.++++...       +....+++++.++|
T Consensus       125 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~L  204 (250)
T 1o9g_A          125 LEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASAL  204 (250)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHS
T ss_pred             hhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhc
Confidence                     56             99999887432     3348999999987776553       45678999999999


Q ss_pred             CCCcEEEEEecc
Q 018970          260 KPGGFFVLKENI  271 (348)
Q Consensus       260 kpgG~lii~~~~  271 (348)
                      +|||++++..+.
T Consensus       205 kpgG~l~~~~~~  216 (250)
T 1o9g_A          205 PAHAVIAVTDRS  216 (250)
T ss_dssp             CTTCEEEEEESS
T ss_pred             CCCcEEEEeCcc
Confidence            999999996543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.46  E-value=9.3e-14  Score=124.03  Aligned_cols=106  Identities=17%  Similarity=0.176  Sum_probs=85.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--CCCcee
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~fD  232 (348)
                      .++.+|||||||+|..+..++.... ..|+++|+|+.+++.|++++...++     ..++++..+|+.+...  .+++||
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~fD  144 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF-----ENQVRIIEGNALEQFENVNDKVYD  144 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-----TTTEEEEESCGGGCHHHHTTSCEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECCHHHHHHhhccCCcc
Confidence            3567999999999999999987432 3799999999999999999876543     3479999999977532  247899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      +|++....     .+...+++.+.++|||||+|++.+..
T Consensus       145 ~V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~  178 (232)
T 3ntv_A          145 MIFIDAAK-----AQSKKFFEIYTPLLKHQGLVITDNVL  178 (232)
T ss_dssp             EEEEETTS-----SSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred             EEEEcCcH-----HHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence            99976442     25778999999999999999885543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.45  E-value=2.3e-13  Score=124.55  Aligned_cols=127  Identities=13%  Similarity=0.068  Sum_probs=100.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+|||+|.++..++.. ++ ..|+++|+|+.+++.|++++...++     ..++++...|+.+. .+.++||
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-~~~~~~D  183 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVTIKVRDISEG-FDEKDVD  183 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEEEECCCGGGC-CSCCSEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCHHHc-ccCCccC
Confidence            567789999999999999999987 43 3799999999999999998765432     34688999998776 4446899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      +|++.     .+  +...+++.+.++|+|||.+++.....              .....+.+.+++.||..++...
T Consensus       184 ~V~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~~~--------------~~~~~~~~~l~~~gf~~~~~~~  238 (277)
T 1o54_A          184 ALFLD-----VP--DPWNYIDKCWEALKGGGRFATVCPTT--------------NQVQETLKKLQELPFIRIEVWE  238 (277)
T ss_dssp             EEEEC-----CS--CGGGTHHHHHHHEEEEEEEEEEESSH--------------HHHHHHHHHHHHSSEEEEEEEC
T ss_pred             EEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCCH--------------HHHHHHHHHHHHCCCceeEEEE
Confidence            99983     33  45689999999999999999987421              1234577788889999877554

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.45  E-value=8.4e-14  Score=123.21  Aligned_cols=108  Identities=10%  Similarity=0.092  Sum_probs=84.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CC-C----
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TP-E----  227 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~-~----  227 (348)
                      .++.+|||||||+|..+..++....  .+|+++|+|+.|++.|++++...++     ..++++..+|+.+. +. .    
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~  131 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL-----QDKVTILNGASQDLIPQLKKKYD  131 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHGGGTTTTSC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC-----CCceEEEECCHHHHHHHHHHhcC
Confidence            3557999999999999999987532  3799999999999999998865443     34699999997552 21 1    


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      .++||+|++....++..  +...++..+ ++|||||+|++.+..
T Consensus       132 ~~~fD~V~~d~~~~~~~--~~~~~~~~~-~~LkpgG~lv~~~~~  172 (221)
T 3u81_A          132 VDTLDMVFLDHWKDRYL--PDTLLLEKC-GLLRKGTVLLADNVI  172 (221)
T ss_dssp             CCCCSEEEECSCGGGHH--HHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred             CCceEEEEEcCCcccch--HHHHHHHhc-cccCCCeEEEEeCCC
Confidence            26899999988777654  455778888 999999999887643

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.45  E-value=8.4e-13  Score=111.16  Aligned_cols=122  Identities=11%  Similarity=0.074  Sum_probs=92.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------  225 (348)
                      ..++.+|||+|||+|.++..++.. +. ..++++|+|+ +++.                .++++...|+.+.+       
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------------~~~~~~~~d~~~~~~~~~~~~   82 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------------VGVDFLQGDFRDELVMKALLE   82 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------------TTEEEEESCTTSHHHHHHHHH
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------------CcEEEEEcccccchhhhhhhc
Confidence            456779999999999999999887 34 4799999998 7531                35889999998865       


Q ss_pred             -CCCCceeEEeechhhhcCChhh---------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHH
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDD---------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKEL  295 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d---------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l  295 (348)
                       .++++||+|+++.++++.....         ...+++.+.++|+|||.+++......              +...+.+.
T Consensus        83 ~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------------~~~~~~~~  148 (180)
T 1ej0_A           83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE--------------GFDEYLRE  148 (180)
T ss_dssp             HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST--------------THHHHHHH
T ss_pred             cCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC--------------cHHHHHHH
Confidence             4557899999998888765321         16899999999999999998764321              23456666


Q ss_pred             HHhcCCeEEEEee
Q 018970          296 FSRCGLHIYKSKD  308 (348)
Q Consensus       296 ~~~aGf~~v~~~~  308 (348)
                      +++. |..+....
T Consensus       149 ~~~~-~~~~~~~~  160 (180)
T 1ej0_A          149 IRSL-FTKVKVRK  160 (180)
T ss_dssp             HHHH-EEEEEEEC
T ss_pred             HHHh-hhhEEeec
Confidence            6664 77666543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.45  E-value=1.8e-13  Score=128.06  Aligned_cols=103  Identities=20%  Similarity=0.209  Sum_probs=86.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||||||+|.++..++..+..  +|+++|+|+.+++.|++++...++      .++++...|+.+.....++||
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD  146 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVCGDGYYGVPEFSPYD  146 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEE
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCeEEEECChhhccccCCCeE
Confidence            567789999999999999999877542  599999999999999998765433      358999999887554457899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      +|++..+++|+.        +.+.++|||||.+++....
T Consensus       147 ~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          147 VIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             EEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred             EEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence            999999999987        4678899999999997543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.44  E-value=3e-13  Score=127.32  Aligned_cols=131  Identities=15%  Similarity=0.097  Sum_probs=95.7

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCc-ceeEEEcCCCCCCCC----CCc
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTPE----TGR  230 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~----~~~  230 (348)
                      .++.+|||+|||+|.++..++..+. .|+++|+|+.+++.|++++...++     .. ++++.+.|+.++...    .++
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl-----~~~~v~~i~~D~~~~l~~~~~~~~~  225 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGL-----EQAPIRWICEDAMKFIQREERRGST  225 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTC-----TTSCEEEECSCHHHHHHHHHHHTCC
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECcHHHHHHHHHhcCCC
Confidence            3567999999999999999998777 799999999999999998765433     22 488999998775321    368


Q ss_pred             eeEEeechhhhcCC--------hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHH----h
Q 018970          231 YDVIWVQWCIGHLT--------DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFS----R  298 (348)
Q Consensus       231 fD~Ii~~~~l~~~~--------~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~----~  298 (348)
                      ||+|++........        .+++..+++.+.++|+|||.|++......            ..+.+.+.++++    +
T Consensus       226 fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~------------~~~~~~~~~~l~~a~~~  293 (332)
T 2igt_A          226 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI------------RASFYSMHELMRETMRG  293 (332)
T ss_dssp             BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT------------TSCHHHHHHHHHHHTTT
T ss_pred             ceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCC------------CCCHHHHHHHHHHHHHH
Confidence            99999954421110        13578899999999999999888664321            123344444444    7


Q ss_pred             cCCeEE
Q 018970          299 CGLHIY  304 (348)
Q Consensus       299 aGf~~v  304 (348)
                      +|+++.
T Consensus       294 ~g~~v~  299 (332)
T 2igt_A          294 AGGVVA  299 (332)
T ss_dssp             SCSEEE
T ss_pred             cCCeEE
Confidence            898875

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.44  E-value=2.1e-13  Score=119.78  Aligned_cols=103  Identities=15%  Similarity=0.055  Sum_probs=84.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      ..++.+|||||||+|.++..++....  ..|+++|+|+.+++.+++++...++      .++.+...|+.......++||
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD  148 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY------DNVIVIVGDGTLGYEPLAPYD  148 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEESCGGGCCGGGCCEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCCCCCee
Confidence            56778999999999999999988763  4799999999999999998754322      358888888754333346899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      +|++..+++|+.        +++.++|||||.+++....
T Consensus       149 ~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          149 RIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             EEEESSBBSSCC--------HHHHHTEEEEEEEEEEESS
T ss_pred             EEEECCchHHHH--------HHHHHHcCCCcEEEEEECC
Confidence            999999999987        3789999999999998643

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.44  E-value=1.3e-13  Score=122.47  Aligned_cols=106  Identities=16%  Similarity=0.181  Sum_probs=85.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCC-cceeEEEcCCCCCC--CCCCce
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVPLQDFT--PETGRY  231 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~f  231 (348)
                      ++.+|||||||+|..+..++....  ..|+++|+|+.+++.|++++...++     . .++++..+|+.++.  ..+++|
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~~i~~~~gda~~~l~~~~~~~f  130 (221)
T 3dr5_A           56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY-----SPSRVRFLLSRPLDVMSRLANDSY  130 (221)
T ss_dssp             TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC-----CGGGEEEECSCHHHHGGGSCTTCE
T ss_pred             CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcCcEEEEEcCHHHHHHHhcCCCc
Confidence            345999999999999999997643  3799999999999999999876544     3 57999999876642  224789


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                      |+|++.....     +...+++.+.++|||||+|++.+...
T Consensus       131 D~V~~d~~~~-----~~~~~l~~~~~~LkpGG~lv~dn~~~  166 (221)
T 3dr5_A          131 QLVFGQVSPM-----DLKALVDAAWPLLRRGGALVLADALL  166 (221)
T ss_dssp             EEEEECCCTT-----THHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred             CeEEEcCcHH-----HHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            9999865432     56789999999999999999865443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.44  E-value=1e-12  Score=124.68  Aligned_cols=131  Identities=18%  Similarity=0.099  Sum_probs=102.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      ..++.+|||+|||+|.++..++... . ..|+|+|+|+.|++.|++++...++     . ++++.+.|+.+++.+.+.||
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~-----~-~i~~~~~D~~~~~~~~~~~D  274 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL-----S-WIRFLRADARHLPRFFPEVD  274 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC-----T-TCEEEECCGGGGGGTCCCCS
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC-----C-ceEEEeCChhhCccccCCCC
Confidence            5677899999999999999998765 2 3699999999999999999876544     2 68999999999876667799


Q ss_pred             EEeechhhhcCCh------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          233 VIWVQWCIGHLTD------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       233 ~Ii~~~~l~~~~~------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      +|+++..+.....      +....+++.+.++|||||.+++...                 +.+.+.++++ .||+....
T Consensus       275 ~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~-----------------~~~~~~~~~~-~g~~~~~~  336 (354)
T 3tma_A          275 RILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL-----------------RPALLKRALP-PGFALRHA  336 (354)
T ss_dssp             EEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES-----------------CHHHHHHHCC-TTEEEEEE
T ss_pred             EEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC-----------------CHHHHHHHhh-cCcEEEEE
Confidence            9999766543211      1246899999999999999999763                 2344556666 89988775


Q ss_pred             eec
Q 018970          307 KDQ  309 (348)
Q Consensus       307 ~~~  309 (348)
                      ...
T Consensus       337 ~~l  339 (354)
T 3tma_A          337 RVV  339 (354)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.43  E-value=2.6e-13  Score=119.94  Aligned_cols=107  Identities=19%  Similarity=0.123  Sum_probs=84.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC----C-C
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----E-T  228 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~-~  228 (348)
                      .++.+|||||||+|..+..++....  .+|+++|+|+.+++.|++++...++     ..++++..+|+.+...    . .
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~  131 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL-----NDRVEVRTGLALDSLQQIENEKY  131 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHTTC
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhcCC
Confidence            3567999999999999999997753  3799999999999999998876543     3468999998865321    1 1


Q ss_pred             CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                      ++||+|++.....     ....+++.+.++|+|||++++.+...
T Consensus       132 ~~fD~v~~d~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          132 EPFDFIFIDADKQ-----NNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             CCCSEEEECSCGG-----GHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             CCcCEEEEcCCcH-----HHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            5799999865532     56789999999999999888876543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.43  E-value=1.3e-13  Score=121.84  Aligned_cols=106  Identities=13%  Similarity=0.123  Sum_probs=84.5

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CC----C
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE----T  228 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~----~  228 (348)
                      ++.+|||||||+|..+..++....  .+|+++|+|+.+++.|++++...++     ..++++.++|+.+..  ..    .
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~  138 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL-----SDKIGLRLSPAKDTLAELIHAGQA  138 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHTTTCT
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeCCHHHHHHHhhhccCC
Confidence            457999999999999999987643  3799999999999999999876543     346899999885532  11    1


Q ss_pred             CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                      ++||+|++....     .+...+++.+.++|||||+|++.+...
T Consensus       139 ~~fD~v~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~  177 (225)
T 3tr6_A          139 WQYDLIYIDADK-----ANTDLYYEESLKLLREGGLIAVDNVLR  177 (225)
T ss_dssp             TCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             CCccEEEECCCH-----HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            689999965532     357789999999999999999977554

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.41  E-value=6.5e-14  Score=118.02  Aligned_cols=103  Identities=17%  Similarity=0.255  Sum_probs=81.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC----CCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD  232 (348)
                      ++.+|||+|||+|.++..++..+.. |+++|+|+.+++.|++++...+       .++++.+.|+.+...    ..++||
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~D  112 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTG-------LGARVVALPVEVFLPEAKAQGERFT  112 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHT-------CCCEEECSCHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcC-------CceEEEeccHHHHHHhhhccCCceE
Confidence            5679999999999999999988776 9999999999999999876432       158888888876321    124799


Q ss_pred             EEeechhhhcCChhhHHHHHHHHH--HcCCCCcEEEEEecc
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKENI  271 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~--~~LkpgG~lii~~~~  271 (348)
                      +|+++.+++  .  +...+++.+.  ++|+|||.+++....
T Consensus       113 ~i~~~~~~~--~--~~~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          113 VAFMAPPYA--M--DLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             EEEECCCTT--S--CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             EEEECCCCc--h--hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence            999998776  2  3345566666  999999999997644

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.41  E-value=7e-14  Score=125.87  Aligned_cols=106  Identities=11%  Similarity=0.155  Sum_probs=85.6

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC------C
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------T  228 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------~  228 (348)
                      ++.+|||||||+|..+..++....  ..|+++|+|+.+++.|++++...++     ..++++..+|+.+....      .
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~~~~~~~~  134 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ-----EHKIKLRLGPALDTLHSLLNEGGE  134 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHHHCS
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHhhccCC
Confidence            457999999999999999987643  3799999999999999999876544     35799999998664321      3


Q ss_pred             CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                      ++||+|++...     ..+...+++.+.++|||||+|++.+...
T Consensus       135 ~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~  173 (242)
T 3r3h_A          135 HQFDFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFW  173 (242)
T ss_dssp             SCEEEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred             CCEeEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence            78999998654     2367789999999999999999976544

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.41  E-value=1.9e-12  Score=123.83  Aligned_cols=148  Identities=17%  Similarity=0.131  Sum_probs=110.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      .++.+|||+|||+|.++..++..+.. .|+|+|+|+.|++.|++++...++     ..++++.+.|+.+++.++++||+|
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl-----~~~i~~~~~D~~~~~~~~~~fD~I  290 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV-----LDKIKFIQGDATQLSQYVDSVDFA  290 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC-----GGGCEEEECCGGGGGGTCSCEEEE
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECChhhCCcccCCcCEE
Confidence            46779999999999999999877663 699999999999999999876543     357999999999988766899999


Q ss_pred             eechhhhcCC-----hhh-HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          235 WVQWCIGHLT-----DDD-FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       235 i~~~~l~~~~-----~~d-~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      +++..++.-.     ..+ ...+++.+.++|  ||.+++..                 .+.+.+.+.+++.||++.....
T Consensus       291 i~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~-----------------~~~~~~~~~~~~~G~~~~~~~~  351 (373)
T 3tm4_A          291 ISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT-----------------TEKKAIEEAIAENGFEIIHHRV  351 (373)
T ss_dssp             EEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEE-----------------SCHHHHHHHHHHTTEEEEEEEE
T ss_pred             EECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE-----------------CCHHHHHHHHHHcCCEEEEEEE
Confidence            9987654321     012 367889999988  45444443                 1456788899999999887554


Q ss_pred             cCCCCccceEEEEEEEeecCCC
Q 018970          309 QKGLPEELFAVKMYALTAEMPR  330 (348)
Q Consensus       309 ~~~~~~~l~~v~~~~l~~~~~~  330 (348)
                      ..   .....+.+|--+|..+.
T Consensus       352 ~~---nG~l~~~~~~~~~~~~~  370 (373)
T 3tm4_A          352 IG---HGGLMVHLYVVKLEHHH  370 (373)
T ss_dssp             EE---ETTEEEEEEEEEETTCC
T ss_pred             EE---cCCEEEEEEeccCccCC
Confidence            32   23457777766655443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.41  E-value=3.5e-13  Score=120.06  Aligned_cols=106  Identities=13%  Similarity=0.210  Sum_probs=86.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CCC--CCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPE--TGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~--~~~f  231 (348)
                      .++.+|||+|||+|..+..++...+ ..|+++|+|+.+++.|++++...++     ..++.+...|+.+. +..  +++|
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~f  127 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL-----ESRIELLFGDALQLGEKLELYPLF  127 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCGGGSHHHHTTSCCE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECCHHHHHHhcccCCCc
Confidence            3567999999999999999998753 3799999999999999998865433     34689999988774 211  3689


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      |+|++....+     +...+++.+.++|+|||.+++.+..
T Consensus       128 D~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~  162 (233)
T 2gpy_A          128 DVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVL  162 (233)
T ss_dssp             EEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred             cEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            9999987754     5778999999999999999987543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.41  E-value=7.2e-14  Score=140.83  Aligned_cols=107  Identities=17%  Similarity=0.124  Sum_probs=87.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--CCCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~  233 (348)
                      .++.+|||||||.|.++..|+..+.. |+|+|+|+.+|+.|+..+.+.+.      .+++|.+.+++++  ..++++||+
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga~-V~giD~~~~~i~~a~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~  137 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGAT-IVGIDFQQENINVCRALAEENPD------FAAEFRVGRIEEVIAALEEGEFDL  137 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTSTT------SEEEEEECCHHHHHHHCCTTSCSE
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCCE-EEEECCCHHHHHHHHHHHHhcCC------CceEEEECCHHHHhhhccCCCccE
Confidence            45679999999999999999988875 99999999999999998765432      4699999999887  344579999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |+|..+++|+++.+....+..+.+.|+++|..++..
T Consensus       138 v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          138 AIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             EEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred             EEECcchhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence            999999999996443344566777888888766654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.41  E-value=1.3e-12  Score=118.68  Aligned_cols=97  Identities=16%  Similarity=0.136  Sum_probs=81.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      .++.+|||||||+|.++..++... ...|+++|+|+.|++.|+++..           ++.+...|+.+++.++++||+|
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~~~~~~fD~v  152 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-----------QVTFCVASSHRLPFSDTSMDAI  152 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTSCSBCTTCEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC-----------CcEEEEcchhhCCCCCCceeEE
Confidence            466799999999999999998764 2379999999999999998752           4788999999888777899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                      ++..+.         .+++++.++|||||.+++.....
T Consensus       153 ~~~~~~---------~~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          153 IRIYAP---------CKAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             EEESCC---------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEeCCh---------hhHHHHHHhcCCCcEEEEEEcCH
Confidence            986552         25789999999999999987544

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.40  E-value=9.7e-13  Score=122.97  Aligned_cols=135  Identities=15%  Similarity=0.151  Sum_probs=99.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+|||+|..+..++....  ..|+++|+|+.+++.+++++...++      .++.+.+.|+.+++...++||
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~------~~v~~~~~D~~~~~~~~~~fD  189 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLHIGELNVEFD  189 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGGGGGGCCCEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC------CeEEEEECChhhcccccccCC
Confidence            56778999999999999999997643  3799999999999999998865433      368899999888764346899


Q ss_pred             EEeech------hhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHH
Q 018970          233 VIWVQW------CIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYF  292 (348)
Q Consensus       233 ~Ii~~~------~l~~~~~-------~d-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l  292 (348)
                      +|++..      ++++.++       ++       ...+++++.++|||||.++++.-....           .-+...+
T Consensus       190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~-----------~Ene~~v  258 (315)
T 1ixk_A          190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP-----------EENEFVI  258 (315)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG-----------GGTHHHH
T ss_pred             EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh-----------HHhHHHH
Confidence            999842      2333221       11       258999999999999999997632210           0134457


Q ss_pred             HHHHHhcCCeEEEE
Q 018970          293 KELFSRCGLHIYKS  306 (348)
Q Consensus       293 ~~l~~~aGf~~v~~  306 (348)
                      ..++++.||+++..
T Consensus       259 ~~~l~~~~~~~~~~  272 (315)
T 1ixk_A          259 QWALDNFDVELLPL  272 (315)
T ss_dssp             HHHHHHSSEEEECC
T ss_pred             HHHHhcCCCEEecC
Confidence            78888899887654

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.40  E-value=5.5e-13  Score=127.15  Aligned_cols=104  Identities=19%  Similarity=0.208  Sum_probs=86.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      ++.+|||||||+|.++...++.+...|+++|.|+ |++.|++.+...++     ..+++++..+++++..+ ++||+|++
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~-----~~~i~~i~~~~~~~~lp-e~~Dvivs  155 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGL-----EDRVHVLPGPVETVELP-EQVDAIVS  155 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTC-----TTTEEEEESCTTTCCCS-SCEEEEEC
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCC-----CceEEEEeeeeeeecCC-ccccEEEe
Confidence            4678999999999999988877888899999996 89999998876655     56799999999998876 78999998


Q ss_pred             chhhhcCCh-hhHHHHHHHHHHcCCCCcEEEE
Q 018970          237 QWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       237 ~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      -+.-..+.. ..+..++....++|||||.++-
T Consensus       156 E~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          156 EWMGYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             CCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             ecccccccccchhhhHHHHHHhhCCCCceECC
Confidence            554333332 2578899999999999999875

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.40  E-value=7.9e-13  Score=128.14  Aligned_cols=114  Identities=13%  Similarity=-0.019  Sum_probs=86.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHH-------HHHhCCCCCCCcCCCcceeEEEcCCCCC--
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAA-------RESLAPENHMAPDMHKATNFFCVPLQDF--  224 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a-------~~~~~~~~~~~~~~~~~i~~~~~d~~~~--  224 (348)
                      +.++.+|||||||+|.++..++.... ..|+|+|+|+.+++.|       ++++...|+.    ..++++..+|....  
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~----~~nV~~i~gD~~~~~~  315 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR----LNNVEFSLKKSFVDNN  315 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC----CCCEEEEESSCSTTCH
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC----CCceEEEEcCcccccc
Confidence            56788999999999999999987643 4799999999999988       7776554320    14688888753321  


Q ss_pred             CC--CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC
Q 018970          225 TP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG  275 (348)
Q Consensus       225 ~~--~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~  275 (348)
                      ++  ..++||+|+++.++ +.+  ++..+|+++.++|||||.|++.+......
T Consensus       316 ~~~~~~~~FDvIvvn~~l-~~~--d~~~~L~el~r~LKpGG~lVi~d~f~p~~  365 (433)
T 1u2z_A          316 RVAELIPQCDVILVNNFL-FDE--DLNKKVEKILQTAKVGCKIISLKSLRSLT  365 (433)
T ss_dssp             HHHHHGGGCSEEEECCTT-CCH--HHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             ccccccCCCCEEEEeCcc-ccc--cHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence            11  13689999987666 323  77889999999999999999987655433

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.39  E-value=3e-12  Score=111.59  Aligned_cols=126  Identities=16%  Similarity=0.122  Sum_probs=97.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||+|||+|.++..++..+...|+++|+|+.+++.+++++...+       .++++.+.|+.+++   ++||+|
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~---~~~D~v  116 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK-------GKFKVFIGDVSEFN---SRVDIV  116 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT-------TSEEEEESCGGGCC---CCCSEE
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcC-------CCEEEEECchHHcC---CCCCEE
Confidence            34667999999999999999987766679999999999999999986532       26899999998874   589999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      +++..+++........+++.+.++|  || +++.....             ..+.+.+.+.+++.||++...
T Consensus       117 ~~~~p~~~~~~~~~~~~l~~~~~~l--~~-~~~~~~~~-------------~~~~~~~~~~l~~~g~~~~~~  172 (207)
T 1wy7_A          117 IMNPPFGSQRKHADRPFLLKAFEIS--DV-VYSIHLAK-------------PEVRRFIEKFSWEHGFVVTHR  172 (207)
T ss_dssp             EECCCCSSSSTTTTHHHHHHHHHHC--SE-EEEEEECC-------------HHHHHHHHHHHHHTTEEEEEE
T ss_pred             EEcCCCccccCCchHHHHHHHHHhc--Cc-EEEEEeCC-------------cCCHHHHHHHHHHCCCeEEEE
Confidence            9999988876544567899999998  55 44332100             023455778899999987653

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.39  E-value=2.6e-12  Score=111.59  Aligned_cols=117  Identities=15%  Similarity=0.244  Sum_probs=87.7

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++..+...|+++|+|+.|++.|++++.           ++++.+.|+.+++   ++||+|+
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----------~~~~~~~d~~~~~---~~~D~v~  115 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVSEIS---GKYDTWI  115 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGGGCC---CCEEEEE
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----------CCEEEECcHHHCC---CCeeEEE
Confidence            4667999999999999999987755579999999999999999864           4789999998864   6899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      ++.+++++.+.....+++++.++|  |+ +++..+.               .+...+.+++++.| ++..
T Consensus       116 ~~~p~~~~~~~~~~~~l~~~~~~~--g~-~~~~~~~---------------~~~~~~~~~~~~~g-~~~~  166 (200)
T 1ne2_A          116 MNPPFGSVVKHSDRAFIDKAFETS--MW-IYSIGNA---------------KARDFLRREFSARG-DVFR  166 (200)
T ss_dssp             ECCCC-------CHHHHHHHHHHE--EE-EEEEEEG---------------GGHHHHHHHHHHHE-EEEE
T ss_pred             ECCCchhccCchhHHHHHHHHHhc--Cc-EEEEEcC---------------chHHHHHHHHHHCC-CEEE
Confidence            999999987544457899999998  44 4444321               12455788888888 6444

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.39  E-value=4.6e-12  Score=109.78  Aligned_cols=121  Identities=15%  Similarity=0.171  Sum_probs=86.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC---CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~---~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------  225 (348)
                      +.++.+|||+|||+|.++..++....   ..|+++|+|+.+         .        ..++.+.+.|+.+.+      
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~--------~~~v~~~~~d~~~~~~~~~~~   82 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P--------IPNVYFIQGEIGKDNMNNIKN   82 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C--------CTTCEEEECCTTTTSSCCC--
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C--------CCCceEEEccccchhhhhhcc
Confidence            35678999999999999999998764   379999999831         1        235888999988765      


Q ss_pred             -------------------CCCCceeEEeechhhhcCCh--hhH-------HHHHHHHHHcCCCCcEEEEEecccCCCce
Q 018970          226 -------------------PETGRYDVIWVQWCIGHLTD--DDF-------VSFFKRAKVGLKPGGFFVLKENIARSGFV  277 (348)
Q Consensus       226 -------------------~~~~~fD~Ii~~~~l~~~~~--~d~-------~~~l~~~~~~LkpgG~lii~~~~~~~~~~  277 (348)
                                         .++++||+|++..++++...  .+.       ..+++.+.++|||||.|++.....     
T Consensus        83 ~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~-----  157 (201)
T 2plw_A           83 INYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG-----  157 (201)
T ss_dssp             ---------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS-----
T ss_pred             ccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC-----
Confidence                               34568999999887766421  121       248899999999999999854211     


Q ss_pred             ecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          278 LDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       278 ~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                               .+...+...++. .|..+...
T Consensus       158 ---------~~~~~l~~~l~~-~f~~v~~~  177 (201)
T 2plw_A          158 ---------SQTNNLKTYLKG-MFQLVHTT  177 (201)
T ss_dssp             ---------TTHHHHHHHHHT-TEEEEEEC
T ss_pred             ---------CCHHHHHHHHHH-HHheEEEE
Confidence                     123456666655 46655543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.38  E-value=8.6e-13  Score=118.71  Aligned_cols=115  Identities=12%  Similarity=0.119  Sum_probs=82.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcC--CCcceeEEEcCCCC-CC--CCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPD--MHKATNFFCVPLQD-FT--PET  228 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~--~~~~i~~~~~d~~~-~~--~~~  228 (348)
                      ..++.+|||||||+|.++..++..++. .|+++|+|+.+++.|++++.........  -..++.+.++|+.+ ++  ++.
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence            346679999999999999999988765 7999999999999998876431000000  02468999999987 44  456


Q ss_pred             CceeEEeechhhhcCChh------hHHHHHHHHHHcCCCCcEEEEEe
Q 018970          229 GRYDVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~~~~------d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +++|.|++...-.+....      -...+++++.++|+|||.|++..
T Consensus       127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            789999854321111000      01479999999999999999964

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.38  E-value=1.2e-12  Score=116.92  Aligned_cols=102  Identities=18%  Similarity=0.153  Sum_probs=82.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~  233 (348)
                      ..++.+|||||||+|.++..++..+...|+++|+|+.+++.|++++...++      .++.+...|+. .+.+ .+.||+
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~-~~~~~~~~fD~  161 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV------KNVHVILGDGS-KGFPPKAPYDV  161 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGG-GCCGGGCCEEE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC------CCcEEEECCcc-cCCCCCCCccE
Confidence            467789999999999999999877635699999999999999998765432      35888888862 2222 245999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      |++..+++++.        +++.++|+|||.+++....
T Consensus       162 Ii~~~~~~~~~--------~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          162 IIVTAGAPKIP--------EPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             EEECSBBSSCC--------HHHHHTEEEEEEEEEEECS
T ss_pred             EEECCcHHHHH--------HHHHHhcCCCcEEEEEEec
Confidence            99999999887        2678999999999998653

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.38  E-value=5.2e-13  Score=116.99  Aligned_cols=104  Identities=12%  Similarity=0.148  Sum_probs=82.6

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CCCCCceeE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV  233 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~  233 (348)
                      ++.+|||||||+|..+..++....  .+|+++|+|+.+++.|++++...++     ..++++..+|..+. +..++ ||+
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~-fD~  129 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL-----IDRVELQVGDPLGIAAGQRD-IDI  129 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG-----GGGEEEEESCHHHHHTTCCS-EEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CceEEEEEecHHHHhccCCC-CCE
Confidence            456999999999999999987643  3799999999999999988765332     34689999988653 33336 999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      |++....     .+...+++.+.++|||||.+++.+..
T Consensus       130 v~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~  162 (210)
T 3c3p_A          130 LFMDCDV-----FNGADVLERMNRCLAKNALLIAVNAL  162 (210)
T ss_dssp             EEEETTT-----SCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred             EEEcCCh-----hhhHHHHHHHHHhcCCCeEEEEECcc
Confidence            9987432     26778999999999999999886543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.37  E-value=1.3e-12  Score=119.32  Aligned_cols=127  Identities=15%  Similarity=0.064  Sum_probs=96.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-C-CCcEEEEcCCHHHHHHHHHHhCCC-C-CCCcCCCcceeEEEcCCCCCCCCCCc
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPE-N-HMAPDMHKATNFFCVPLQDFTPETGR  230 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~-~~~v~~vD~S~~~l~~a~~~~~~~-~-~~~~~~~~~i~~~~~d~~~~~~~~~~  230 (348)
                      +.++.+|||+|||+|.++..++.. + ...|+++|+|+.+++.|++++... + +     ..++++...|+.+.+.++++
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~-----~~~v~~~~~d~~~~~~~~~~  171 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP-----PDNWRLVVSDLADSELPDGS  171 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC-----CTTEEEECSCGGGCCCCTTC
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-----CCcEEEEECchHhcCCCCCc
Confidence            567789999999999999999875 2 237999999999999999987542 1 1     24689999999887666678


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHh-cCCeEEEEe
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSR-CGLHIYKSK  307 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~-aGf~~v~~~  307 (348)
                      ||+|++     +++  ++..+++++.++|+|||.+++......              ....+.+.+++ .||..++..
T Consensus       172 ~D~v~~-----~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~--------------~~~~~~~~l~~~~~f~~~~~~  228 (280)
T 1i9g_A          172 VDRAVL-----DML--APWEVLDAVSRLLVAGGVLMVYVATVT--------------QLSRIVEALRAKQCWTEPRAW  228 (280)
T ss_dssp             EEEEEE-----ESS--CGGGGHHHHHHHEEEEEEEEEEESSHH--------------HHHHHHHHHHHHSSBCCCEEE
T ss_pred             eeEEEE-----CCc--CHHHHHHHHHHhCCCCCEEEEEeCCHH--------------HHHHHHHHHHhcCCcCCcEEE
Confidence            999998     334  445799999999999999999874321              12234455555 778765543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.37  E-value=6.4e-13  Score=118.91  Aligned_cols=107  Identities=9%  Similarity=0.089  Sum_probs=84.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-C-------
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-------  225 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-------  225 (348)
                      .++.+|||||||+|..+..++....  ..|+++|+|+.+++.|++++...++     ..++.+..+|+.+. +       
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~~~~~~~~~~~  133 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL-----ENKIFLKLGSALETLQVLIDSKS  133 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHCSS
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCHHHHHHHHHhhcc
Confidence            3567999999999999999998753  3799999999999999998865433     34588998887552 1       


Q ss_pred             -------CC-C-CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          226 -------PE-T-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       226 -------~~-~-~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                             ++ . ++||+|++.....     +...+++.+.++|+|||++++.+...
T Consensus       134 ~~~~~~~f~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~  184 (239)
T 2hnk_A          134 APSWASDFAFGPSSIDLFFLDADKE-----NYPNYYPLILKLLKPGGLLIADNVLW  184 (239)
T ss_dssp             CCGGGTTTCCSTTCEEEEEECSCGG-----GHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             cccccccccCCCCCcCEEEEeCCHH-----HHHHHHHHHHHHcCCCeEEEEEcccc
Confidence                   11 1 6899999875433     56789999999999999999876443

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.36  E-value=4.2e-13  Score=127.82  Aligned_cols=141  Identities=13%  Similarity=0.099  Sum_probs=95.5

Q ss_pred             HHHHHHHHhhhcCCccCCCCCcEEEEecc------ccHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCC
Q 018970          139 EAFLQMLLSDRFPNARNNQHLVALDCGSG------IGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDM  210 (348)
Q Consensus       139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG------~G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~  210 (348)
                      ..++..++...     ..++.+|||||||      +|..+..++.+. +. .|+++|+|+.|.      . .        
T Consensus       203 ~~~Ye~lL~~l-----~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~-~--------  262 (419)
T 3sso_A          203 TPHYDRHFRDY-----RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V-D--------  262 (419)
T ss_dssp             HHHHHHHHGGG-----TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G-C--------
T ss_pred             HHHHHHHHHhh-----cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h-c--------
Confidence            34555555432     2456799999999      777777777663 22 799999999983      1 1        


Q ss_pred             CcceeEEEcCCCCCCCC------CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCC--
Q 018970          211 HKATNFFCVPLQDFTPE------TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKED--  282 (348)
Q Consensus       211 ~~~i~~~~~d~~~~~~~------~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~--  282 (348)
                      ..+++|.++|+.++++.      +++||+|++..+ |++.  +...+|+++.++|||||++++.+........++...  
T Consensus       263 ~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~~--d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~  339 (419)
T 3sso_A          263 ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HINA--HVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADP  339 (419)
T ss_dssp             BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCHH--HHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSST
T ss_pred             CCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccch--hHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccC
Confidence            35799999999987654      579999998754 5544  788999999999999999999886532221121111  


Q ss_pred             -CceecCHHHHHHHHHhcCCe
Q 018970          283 -RSITRSDFYFKELFSRCGLH  302 (348)
Q Consensus       283 -~~~~~s~~~l~~l~~~aGf~  302 (348)
                       .......+.+++++......
T Consensus       340 ~~~~~tii~~lk~l~D~l~~~  360 (419)
T 3sso_A          340 QECSGTSLGLLKSLIDAIQHQ  360 (419)
T ss_dssp             TCCTTSHHHHHHHHHHHHTGG
T ss_pred             CcchhHHHHHHHHHHHHhccc
Confidence             01111234566677665544

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.36  E-value=8.7e-13  Score=119.03  Aligned_cols=106  Identities=14%  Similarity=0.155  Sum_probs=84.7

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-C-C-----C
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P-----E  227 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~  227 (348)
                      ++.+|||||||+|..+..++....  ..|+++|+|+.+++.|++++...++     ..++++..+|+.+. + .     .
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~l~~~~~~  153 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFREGPALPVLDEMIKDEKN  153 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHSGGG
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHHHHHHHHHhccCC
Confidence            456999999999999999998754  3799999999999999998876543     35799999988653 2 1     1


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                      .++||+|++....     .+...+++.+.++|||||+|++.+...
T Consensus       154 ~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~  193 (247)
T 1sui_A          154 HGSYDFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_dssp             TTCBSEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred             CCCEEEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence            4789999986431     257789999999999999998865443

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.35  E-value=3.4e-12  Score=114.27  Aligned_cols=103  Identities=22%  Similarity=0.284  Sum_probs=84.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||+|||+|.++..++.. ...|+++|+|+.+++.|+++....++     ..++++...|+.+...+.++||+|
T Consensus        89 ~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~v  162 (248)
T 2yvl_A           89 LNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNL-----GKNVKFFNVDFKDAEVPEGIFHAA  162 (248)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTC-----CTTEEEECSCTTTSCCCTTCBSEE
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCC-----CCcEEEEEcChhhcccCCCcccEE
Confidence            467789999999999999999987 45799999999999999998765432     356889999988765344689999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      ++.     .+  +...+++.+.++|+|||.+++...
T Consensus       163 ~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          163 FVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             EEC-----SS--CGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             EEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence            973     33  456789999999999999999874

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.35  E-value=5.3e-12  Score=115.57  Aligned_cols=131  Identities=15%  Similarity=0.156  Sum_probs=102.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||+|||+|.++..++..+...|+++|+|+.+++.+++++...++     ..++++++.|..++... +.||.|
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v-----~~~v~~~~~D~~~~~~~-~~~D~V  196 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFPGE-NIADRI  196 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCCCC-SCEEEE
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCcHHHhccc-cCCCEE
Confidence            357789999999999999999988776899999999999999999876655     45689999999988754 789999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      +++....      ...++..+.++|||||+|.+.++......        .....+.+.++.+..|+++..
T Consensus       197 i~~~p~~------~~~~l~~a~~~lk~gG~ih~~~~~~e~~~--------~~~~~e~i~~~~~~~g~~v~~  253 (278)
T 3k6r_A          197 LMGYVVR------THEFIPKALSIAKDGAIIHYHNTVPEKLM--------PREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             EECCCSS------GGGGHHHHHHHEEEEEEEEEEEEEEGGGT--------TTTTHHHHHHHHHHTTCEEEE
T ss_pred             EECCCCc------HHHHHHHHHHHcCCCCEEEEEeeeccccc--------chhHHHHHHHHHHHcCCcEEE
Confidence            9864422      23578888899999999988764432111        112446688889999998643

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.35  E-value=9.2e-13  Score=116.67  Aligned_cols=107  Identities=20%  Similarity=0.181  Sum_probs=83.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC------CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~------~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---  225 (348)
                      +.++.+|||||||+|.++..++....      ..|+++|+|+.+++.|++++...++.... ..++++...|+.+..   
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~  156 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLK-IDNFKIIHKNIYQVNEEE  156 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGS-STTEEEEECCGGGCCHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccc-cCCEEEEECChHhccccc
Confidence            45678999999999999999987754      27999999999999999987543210000 136889999987754   


Q ss_pred             -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                       ...++||+|++..+++++.        +.+.++|||||.+++...
T Consensus       157 ~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          157 KKELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEE
T ss_pred             CccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEc
Confidence             3447899999999888754        678899999999999754

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.34  E-value=2.1e-12  Score=115.78  Aligned_cols=154  Identities=10%  Similarity=-0.012  Sum_probs=109.6

Q ss_pred             hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcc
Q 018970          135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA  213 (348)
Q Consensus       135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~  213 (348)
                      ++..+.++..++..      +.++.+|||||||+|-++..++...+. .|+++|+++.|++.+++++...|       ..
T Consensus       116 Lp~lD~fY~~i~~~------i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g-------~~  182 (281)
T 3lcv_B          116 LPHLDEFYRELFRH------LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN-------VP  182 (281)
T ss_dssp             GGGHHHHHHHHGGG------SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT-------CC
T ss_pred             hHhHHHHHHHHHhc------cCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC-------CC
Confidence            34444555554443      345779999999999999998866444 89999999999999999986643       34


Q ss_pred             eeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHH
Q 018970          214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFK  293 (348)
Q Consensus       214 i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~  293 (348)
                      ..+...|+..-+++ +.||+|++.-+++|+.+......+ ++.+.|+|+|.++-.+.-.-.+    ........-.+.|+
T Consensus       183 ~~~~v~D~~~~~p~-~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~G----rs~gm~~~Y~~~~e  256 (281)
T 3lcv_B          183 HRTNVADLLEDRLD-EPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQ----RSKGMFQNYSQSFE  256 (281)
T ss_dssp             EEEEECCTTTSCCC-SCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-----------CHHHHHHHHHH
T ss_pred             ceEEEeeecccCCC-CCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcC----CCcchhhHHHHHHH
Confidence            77888888766544 789999999999999865544566 8999999999988766411111    01111112345688


Q ss_pred             HHHHhcCCeEEEEe
Q 018970          294 ELFSRCGLHIYKSK  307 (348)
Q Consensus       294 ~l~~~aGf~~v~~~  307 (348)
                      +.+.+.|..+-...
T Consensus       257 ~~~~~~g~~~~~~~  270 (281)
T 3lcv_B          257 SQARERSCRIQRLE  270 (281)
T ss_dssp             HHHHHHTCCEEEEE
T ss_pred             HHHHhcCCceeeee
Confidence            88888999654433

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.34  E-value=1.4e-12  Score=115.37  Aligned_cols=107  Identities=20%  Similarity=0.197  Sum_probs=83.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+|||+|.++..++... . .+|+++|+|+.+++.+++++...+..... ..++.+...|+.......++||
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~fD  153 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS-SGRVQLVVGDGRMGYAEEAPYD  153 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHH-TSSEEEEESCGGGCCGGGCCEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccC-CCcEEEEECCcccCcccCCCcC
Confidence            4567899999999999999998763 3 37999999999999999887542110000 1368899999876554457899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +|++..+++++.        +++.++|||||.+++...
T Consensus       154 ~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          154 AIHVGAAAPVVP--------QALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             EEEECSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred             EEEECCchHHHH--------HHHHHhcCCCcEEEEEEe
Confidence            999998887765        478899999999999764

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.34  E-value=1.9e-12  Score=120.43  Aligned_cols=105  Identities=20%  Similarity=0.243  Sum_probs=82.1

Q ss_pred             CcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeEEe
Q 018970          159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW  235 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~Ii  235 (348)
                      .+|||||||+|.++..+++..+. +|+++|+++.|++.|++++...      ...+++++..|..++.  .+.++||+|+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~------~~~rv~v~~~Da~~~l~~~~~~~fDvIi  164 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP------RAPRVKIRVDDARMVAESFTPASRDVII  164 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC------CTTTEEEEESCHHHHHHTCCTTCEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc------CCCceEEEECcHHHHHhhccCCCCCEEE
Confidence            48999999999999999975543 7999999999999999998642      1357899999987652  2347899999


Q ss_pred             echhhhcCChhh--HHHHHHHHHHcCCCCcEEEEEe
Q 018970          236 VQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       236 ~~~~l~~~~~~d--~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +....+......  ...+++.++++|+|||+|++..
T Consensus       165 ~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             ECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            864433222112  2689999999999999998865

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.33  E-value=1.2e-11  Score=118.31  Aligned_cols=127  Identities=10%  Similarity=0.039  Sum_probs=97.3

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCC-CCCceeE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTP-ETGRYDV  233 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~fD~  233 (348)
                      ++.+|||+| |+|.++..++..++ ..|+++|+|+.|++.|++++...++     . ++++..+|+.+ ++. .+++||+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~-----~-~v~~~~~D~~~~l~~~~~~~fD~  244 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY-----E-DIEIFTFDLRKPLPDYALHKFDT  244 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC-----C-CEEEECCCTTSCCCTTTSSCBSE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----C-CEEEEEChhhhhchhhccCCccE
Confidence            567999999 99999999988776 4899999999999999999865433     2 68999999988 653 2468999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEE-EEEecccCCCceecCCCCceecCH---HHHHHHHH-hcCCeEEEE
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF-VLKENIARSGFVLDKEDRSITRSD---FYFKELFS-RCGLHIYKS  306 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~l-ii~~~~~~~~~~~d~~~~~~~~s~---~~l~~l~~-~aGf~~v~~  306 (348)
                      |+++.+++..   ....+++++.++|||||.+ ++.....             ..+.   ..+.+++. +.||.+...
T Consensus       245 Vi~~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~g~~~~~~  306 (373)
T 2qm3_A          245 FITDPPETLE---AIRAFVGRGIATLKGPRCAGYFGITRR-------------ESSLDKWREIQKLLLNEFNVVITDI  306 (373)
T ss_dssp             EEECCCSSHH---HHHHHHHHHHHTBCSTTCEEEEEECTT-------------TCCHHHHHHHHHHHHHTSCCEEEEE
T ss_pred             EEECCCCchH---HHHHHHHHHHHHcccCCeEEEEEEecC-------------cCCHHHHHHHHHHHHHhcCcchhhh
Confidence            9998766543   2578999999999999954 4443210             0123   45677787 899987553

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.33  E-value=2e-12  Score=115.35  Aligned_cols=106  Identities=11%  Similarity=0.135  Sum_probs=83.6

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC----CCCC--
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET--  228 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~--  228 (348)
                      ++.+|||||||+|..+..++....  ..|+++|+|+.+++.|++++...++     ..++++...|+.+.    +..+  
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~~l~~l~~~~~~  146 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV-----AEKISLRLGPALATLEQLTQGKPL  146 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHHHHHHTSSSC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhcCCC
Confidence            456999999999999999987654  2799999999999999998765433     34689999886542    2222  


Q ss_pred             CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                      ++||+|++....     .+...+++.+.++|+|||+|++.+...
T Consensus       147 ~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~  185 (232)
T 3cbg_A          147 PEFDLIFIDADK-----RNYPRYYEIGLNLLRRGGLMVIDNVLW  185 (232)
T ss_dssp             CCEEEEEECSCG-----GGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred             CCcCEEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            689999986542     367789999999999999999876544

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.32  E-value=1.6e-12  Score=119.00  Aligned_cols=105  Identities=18%  Similarity=0.108  Sum_probs=86.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+|||+|||+|.++..++.... ..|+++|+|+.+++.|++++...++      .++.+.++|+.+++ ..++||+
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l------~~~~~~~~d~~~~~-~~~~~D~  189 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL------NNVIPILADNRDVE-LKDVADR  189 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC------SSEEEEESCGGGCC-CTTCEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEECChHHcC-ccCCceE
Confidence            45678999999999999999998753 3799999999999999998865433      35789999998883 3568999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                      |++....      +...+++.+.+.|+|||+++++....
T Consensus       190 Vi~d~p~------~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          190 VIMGYVH------KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             EEECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEECCcc------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            9987654      34578999999999999999987543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.32  E-value=1.8e-12  Score=114.89  Aligned_cols=107  Identities=19%  Similarity=0.191  Sum_probs=84.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--C--C--
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P--E--  227 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~--~--  227 (348)
                      .++.+|||||||+|..+..++....  ..|+++|+|+.+++.|++++...++     ..++++...|+.+..  .  .  
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~~~~~~~~~~~  142 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDLRLKPALETLDELLAAGE  142 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHTTC
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CCeEEEEEcCHHHHHHHHHhcCC
Confidence            3567999999999999999987643  3799999999999999998865433     356899998875531  1  1  


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                      .++||+|++...     ..+...+++.+.++|+|||.+++.+...
T Consensus       143 ~~~~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~  182 (229)
T 2avd_A          143 AGTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW  182 (229)
T ss_dssp             TTCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             CCCccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            168999998654     2256789999999999999999876443

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.32  E-value=1.2e-12  Score=116.25  Aligned_cols=107  Identities=15%  Similarity=0.114  Sum_probs=82.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-------CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-------~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  227 (348)
                      +.++.+|||||||+|.++..++....       ..|+++|+|+.+++.|++++...++... ...++++...|+.+....
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~  160 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML-DSGQLLIVEGDGRKGYPP  160 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH-HHTSEEEEESCGGGCCGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcccc-CCCceEEEECCcccCCCc
Confidence            45678999999999999999887532       3799999999999999988654210000 013588999998762222


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      .++||+|++..+++++.        +++.++|||||.+++...
T Consensus       161 ~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          161 NAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG  195 (227)
T ss_dssp             GCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred             CCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence            36899999999998876        578999999999999764

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.31  E-value=9.2e-13  Score=120.12  Aligned_cols=105  Identities=15%  Similarity=0.038  Sum_probs=75.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEE--EcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--CVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~--~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||||||+|.++..+++.  ..|+++|+|+ |+..+++..    ........++.+.  ++|+.+++  +++||
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~----~~~~~~~~~v~~~~~~~D~~~l~--~~~fD  142 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVP----RITESYGWNIVKFKSRVDIHTLP--VERTD  142 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCC----CCCCBTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhh----hhhhccCCCeEEEecccCHhHCC--CCCCc
Confidence            467789999999999999988866  4699999998 643222110    0000112268888  88998876  47899


Q ss_pred             EEeechhhhcCChh---hH--HHHHHHHHHcCCCCc--EEEEEe
Q 018970          233 VIWVQWCIGHLTDD---DF--VSFFKRAKVGLKPGG--FFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~---d~--~~~l~~~~~~LkpgG--~lii~~  269 (348)
                      +|+|..+ ++....   ..  ..+|+.+.++|||||  .|++..
T Consensus       143 ~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          143 VIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            9999877 443321   11  138899999999999  999865

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.31  E-value=2.6e-12  Score=115.14  Aligned_cols=106  Identities=11%  Similarity=0.111  Sum_probs=84.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--C-----
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P-----  226 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~-----  226 (348)
                      .++.+|||||||+|..+..++...+  .+|+++|+|+.+++.|++++...++     ..++++..+|+.+..  .     
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~l~~~~~  143 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV-----EHKINFIESDAMLALDNLLQGQE  143 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHSTT
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhccC
Confidence            3457999999999999999998754  3799999999999999999876543     356899999876531  1     


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      +.++||+|++...     ..+...+++.+.++|+|||+|++.+..
T Consensus       144 ~~~~fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~  183 (237)
T 3c3y_A          144 SEGSYDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTL  183 (237)
T ss_dssp             CTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred             CCCCcCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence            1478999997633     236788999999999999999876543

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.31  E-value=4.1e-12  Score=121.95  Aligned_cols=139  Identities=9%  Similarity=0.048  Sum_probs=99.3

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCc-ceeEEEcCCCCCCC----CCCce
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTP----ETGRY  231 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~----~~~~f  231 (348)
                      ++.+|||+|||+|.++..++..+...|+++|+|+.|++.|++++...++     .. +++|.++|+.++..    ...+|
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~-----~~~~v~~~~~D~~~~l~~~~~~~~~f  286 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL-----DMANHQLVVMDVFDYFKYARRHHLTY  286 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTC-----CCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECCHHHHHHHHHHhCCCc
Confidence            4579999999999999999976766899999999999999999876543     22 68999999876321    23589


Q ss_pred             eEEeechhh-----hcCCh--hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          232 DVIWVQWCI-----GHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       232 D~Ii~~~~l-----~~~~~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      |+|++....     .+..+  .++..+++.+.++|+|||.+++..+......         ..-.+.+.+.+.++|.+++
T Consensus       287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~---------~~~~~~i~~~~~~~g~~~~  357 (385)
T 2b78_A          287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTV---------SQFKKQIEKGFGKQKHTYL  357 (385)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCH---------HHHHHHHHHHHTTCCCEEE
T ss_pred             cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCH---------HHHHHHHHHHHHHcCCcEE
Confidence            999985443     22221  3466788899999999999999875432100         0012334556677899866


Q ss_pred             EEeec
Q 018970          305 KSKDQ  309 (348)
Q Consensus       305 ~~~~~  309 (348)
                      ....+
T Consensus       358 ~~~~~  362 (385)
T 2b78_A          358 DLQQL  362 (385)
T ss_dssp             EEECC
T ss_pred             EeCCC
Confidence            54443

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.30  E-value=2.7e-12  Score=115.03  Aligned_cols=122  Identities=12%  Similarity=0.065  Sum_probs=90.7

Q ss_pred             CCCcEEEEeccccHHHHHHHHh----CC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC---CC-C
Q 018970          157 QHLVALDCGSGIGRITKNLLIR----YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TP-E  227 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~----~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~-~  227 (348)
                      ++.+|||||||+|..+..++..    +. .+|+++|+|+.|++.|+. .          ..++++.++|+.+.   +. .
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~----------~~~v~~~~gD~~~~~~l~~~~  149 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D----------MENITLHQGDCSDLTTFEHLR  149 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G----------CTTEEEEECCSSCSGGGGGGS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c----------CCceEEEECcchhHHHHHhhc
Confidence            3469999999999999999876    23 379999999999988762 1          24699999999885   42 2


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHH-cCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhc--CCeEE
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRC--GLHIY  304 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~-~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~a--Gf~~v  304 (348)
                      ..+||+|++...  |.   +...+++++.+ +|||||+|++.+...   .  .     ..++...+.+++++.  +|.+.
T Consensus       150 ~~~fD~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d~~~---~--~-----~~~~~~~~~~~l~~~~~~f~~~  214 (236)
T 2bm8_A          150 EMAHPLIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIEDMIP---Y--W-----YRYAPQLFSEYLGAFRDVLSMD  214 (236)
T ss_dssp             SSCSSEEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECSCHH---H--H-----HHHCHHHHHHHHHTTTTTEEEE
T ss_pred             cCCCCEEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEeCcc---c--c-----cccCHHHHHHHHHhCcccEEEc
Confidence            247999998665  32   56789999997 999999999976410   0  0     012345788888887  56654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.29  E-value=1.5e-12  Score=119.76  Aligned_cols=113  Identities=15%  Similarity=0.152  Sum_probs=81.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCC--CCC---CcCCCcceeEEEcCCCCCCCCCCc
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE--NHM---APDMHKATNFFCVPLQDFTPETGR  230 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~--~~~---~~~~~~~i~~~~~d~~~~~~~~~~  230 (348)
                      .++.+|||||||+|.++..++.....+|+++|+|+.+++.|++++ ..  ++.   ......++++...|+.++...+++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            345799999999999999998773448999999999999999988 32  110   000135689999987553111468


Q ss_pred             eeEEeechhhhcCChhh--HHHHHHHHHHcCCCCcEEEEEe
Q 018970          231 YDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d--~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ||+|++....+..+...  ...+++.+.++|+|||++++..
T Consensus       153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            99999865532211122  2689999999999999999864

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.28  E-value=3.1e-12  Score=120.36  Aligned_cols=110  Identities=17%  Similarity=0.219  Sum_probs=82.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCC--CCCCcCCCcceeEEEcCCCCCC--CCCCc
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQDFT--PETGR  230 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~--~~~~~~~~~~i~~~~~d~~~~~--~~~~~  230 (348)
                      .++.+|||||||+|.++..++.... .+|+++|+|+.+++.|++++...  ++    ...++++..+|+.++.  ...++
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl----~~~rv~~~~~D~~~~l~~~~~~~  194 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY----EDPRVNLVIGDGVAFLKNAAEGS  194 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----GSTTEEEEESCHHHHHHTSCTTC
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc----CCCcEEEEECCHHHHHHhccCCC
Confidence            4567999999999999999986543 38999999999999999987421  11    0246899999976641  23478


Q ss_pred             eeEEeechhhhcCChhh--HHHHHHHHHHcCCCCcEEEEEe
Q 018970          231 YDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d--~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ||+|++..........+  ...+++.+.++|+|||+|++..
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            99999864421111112  4689999999999999999863

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.27  E-value=2.1e-11  Score=115.19  Aligned_cols=155  Identities=12%  Similarity=0.081  Sum_probs=106.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC------CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG  229 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~------~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  229 (348)
                      .++.+|||+|||+|.++..++....      ..++|+|+++.+++.|+.++...+       .++.+.++|...... .+
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-------~~~~i~~~D~l~~~~-~~  200 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-------QKMTLLHQDGLANLL-VD  200 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-------CCCEEEESCTTSCCC-CC
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-------CCceEEECCCCCccc-cC
Confidence            4567999999999999998887643      369999999999999998865432       247888888766432 36


Q ss_pred             ceeEEeechhhhcCChhhH----------------HHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHH
Q 018970          230 RYDVIWVQWCIGHLTDDDF----------------VSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFK  293 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~----------------~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~  293 (348)
                      +||+|+++..+++++.++.                ..+++++.+.|+|||++++..+..   + +..      .....++
T Consensus       201 ~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~---~-~~~------~~~~~ir  270 (344)
T 2f8l_A          201 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA---M-FGT------SDFAKVD  270 (344)
T ss_dssp             CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG---G-GGS------TTHHHHH
T ss_pred             CccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch---h-cCC------chHHHHH
Confidence            8999999999877653321                268999999999999998876322   1 111      1246688


Q ss_pred             HHHHhcCCeEEEE-eecCCCCccceEEEEEEEeecC
Q 018970          294 ELFSRCGLHIYKS-KDQKGLPEELFAVKMYALTAEM  328 (348)
Q Consensus       294 ~l~~~aGf~~v~~-~~~~~~~~~l~~v~~~~l~~~~  328 (348)
                      +.+.+.|+..... .....|...-.+..++.++..+
T Consensus       271 ~~l~~~~~~~~ii~lp~~~F~~~~~~~~i~vl~k~~  306 (344)
T 2f8l_A          271 KFIKKNGHIEGIIKLPETLFKSEQARKSILILEKAD  306 (344)
T ss_dssp             HHHHHHEEEEEEEECCGGGSCC-CCCEEEEEEEECC
T ss_pred             HHHHhCCeEEEeeeCChhhccCCCCceEEEEEECCC
Confidence            8888877643111 1222344333455566666433

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.27  E-value=8.3e-12  Score=114.96  Aligned_cols=106  Identities=12%  Similarity=0.023  Sum_probs=81.4

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCce---eE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY---DV  233 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f---D~  233 (348)
                      ++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...++     ..+++|.+.|+.+.. + ++|   |+
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l-----~~~v~~~~~D~~~~~-~-~~f~~~D~  195 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-----SDRFFVRKGEFLEPF-K-EKFASIEM  195 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTSEEEEESSTTGGG-G-GGTTTCCE
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECcchhhc-c-cccCCCCE
Confidence            4568999999999999999987222799999999999999999876543     235899999998732 2 578   99


Q ss_pred             Eeechhhh-----------cCCh------hhHHHHHHHHH-HcCCCCcEEEEEe
Q 018970          234 IWVQWCIG-----------HLTD------DDFVSFFKRAK-VGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~-----------~~~~------~d~~~~l~~~~-~~LkpgG~lii~~  269 (348)
                      |+++....           |-+.      .+...+++++. +.|+|||++++..
T Consensus       196 IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~  249 (284)
T 1nv8_A          196 ILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  249 (284)
T ss_dssp             EEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             EEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence            99973222           2221      12237899999 9999999999853

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.27  E-value=3.6e-12  Score=116.87  Aligned_cols=109  Identities=17%  Similarity=0.168  Sum_probs=82.3

Q ss_pred             CCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCC--CCCCcCCCcceeEEEcCCCCC-CCCCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQDF-TPETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~--~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD  232 (348)
                      .+.+|||||||+|.++..++... ..+|+++|+++.+++.|++++...  ++    ...++++...|+.++ ....++||
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~----~~~rv~v~~~D~~~~l~~~~~~fD  150 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL----DDPRVDVQVDDGFMHIAKSENQYD  150 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT----TSTTEEEEESCSHHHHHTCCSCEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc----CCCceEEEECcHHHHHhhCCCCee
Confidence            46799999999999999998663 358999999999999999987321  11    035789999998663 22347899


Q ss_pred             EEeechhhhcCChhh--HHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d--~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++....+..+...  ...+++.+.++|+|||++++..
T Consensus       151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            999965443222111  2579999999999999998874

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.27  E-value=4.8e-11  Score=116.80  Aligned_cols=134  Identities=10%  Similarity=0.051  Sum_probs=99.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCc
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR  230 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~  230 (348)
                      +.++.+|||+|||+|..+..++....  ..|+++|+|+.+++.+++++...|+      .++.+.+.|+.+++  +++++
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~~~~~~~~  330 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI------KIVKPLVKDARKAPEIIGEEV  330 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCTTCCSSSSCSSC
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEEEcChhhcchhhccCC
Confidence            56778999999999999999987643  3799999999999999999876443      36889999998876  33468


Q ss_pred             eeEEee------chhhhcCChh-------hH-------HHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHH
Q 018970          231 YDVIWV------QWCIGHLTDD-------DF-------VSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDF  290 (348)
Q Consensus       231 fD~Ii~------~~~l~~~~~~-------d~-------~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~  290 (348)
                      ||+|++      ..++++.++.       ++       ..+++++.++|||||.|++++-.....           -+.+
T Consensus       331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~-----------ene~  399 (450)
T 2yxl_A          331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKE-----------ENEK  399 (450)
T ss_dssp             EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG-----------GTHH
T ss_pred             CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-----------hHHH
Confidence            999996      3444444421       11       578999999999999999886322100           1344


Q ss_pred             HHHHHHHhc-CCeEEE
Q 018970          291 YFKELFSRC-GLHIYK  305 (348)
Q Consensus       291 ~l~~l~~~a-Gf~~v~  305 (348)
                      .+...+++. ||+++.
T Consensus       400 ~v~~~l~~~~~~~~~~  415 (450)
T 2yxl_A          400 NIRWFLNVHPEFKLVP  415 (450)
T ss_dssp             HHHHHHHHCSSCEECC
T ss_pred             HHHHHHHhCCCCEEee
Confidence            566777775 788654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.26  E-value=6.9e-12  Score=114.14  Aligned_cols=100  Identities=15%  Similarity=0.066  Sum_probs=79.0

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      .+.+|||||||+|.++..++... .+|+++|+++.|++.|++++....  ..-...++++..+|..++.   ++||+|++
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~--~~~~~~rv~~~~~D~~~~~---~~fD~Ii~  145 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFH--EVKNNKNFTHAKQLLDLDI---KKYDLIFC  145 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHH--HHHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhc--cccCCCeEEEEechHHHHH---hhCCEEEE
Confidence            45799999999999999998774 789999999999999988764310  0000246889989987765   68999998


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .     .+  ++..+++.+.++|+|||.+++..
T Consensus       146 d-----~~--dp~~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          146 L-----QE--PDIHRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             S-----SC--CCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             C-----CC--ChHHHHHHHHHhcCCCcEEEEEc
Confidence            6     23  33459999999999999999863

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.26  E-value=6.2e-12  Score=118.36  Aligned_cols=148  Identities=13%  Similarity=0.005  Sum_probs=82.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CC-CcEEEEcCCHHHHHHHHHHhCCCC----CCCc-CCCcceeEEEcCCCCC--C
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPEN----HMAP-DMHKATNFFCVPLQDF--T  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~-~~v~~vD~S~~~l~~a~~~~~~~~----~~~~-~~~~~i~~~~~d~~~~--~  225 (348)
                      +.++.+|||+|||+|.++..++.. ++ ..|+++|+|+.+++.|++++...+    +... ....++++...|+.+.  +
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~  182 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  182 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence            567789999999999999999877 44 479999999999999999875311    0000 0124799999999886  3


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC-------------CCce----ecCCCCcee--
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR-------------SGFV----LDKEDRSIT--  286 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~-------------~~~~----~d~~~~~~~--  286 (348)
                      .++++||+|++...       +...+++.+.++|+|||.|++......             ..+.    .......+.  
T Consensus       183 ~~~~~fD~V~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~  255 (336)
T 2b25_A          183 IKSLTFDAVALDML-------NPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIVRDWLVC  255 (336)
T ss_dssp             -----EEEEEECSS-------STTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEECCCCCCEEEC
T ss_pred             cCCCCeeEEEECCC-------CHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcccceEEEecccceEEE
Confidence            44568999998532       223488999999999999998653221             1110    111111111  


Q ss_pred             ---cCHHHHHHHHHhcCCeEEEEeec
Q 018970          287 ---RSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       287 ---~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                         .....+...++++||..++....
T Consensus       256 ~~~~~~g~y~~~l~~aGF~~v~~~~~  281 (336)
T 2b25_A          256 LAKQKNGILAQKVESKINTDVQLDSQ  281 (336)
T ss_dssp             C-------------------------
T ss_pred             eecccccchhhhhccccccccccccc
Confidence               11226888999999998885544

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.26  E-value=4.2e-12  Score=116.87  Aligned_cols=112  Identities=21%  Similarity=0.255  Sum_probs=84.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~  233 (348)
                      .++.+|||||||+|.++..++... ..+|+++|+|+.+++.|++++...+..  -...++++...|+.++. ...++||+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~l~~~~~~fD~  154 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG--YEDKRVNVFIEDASKFLENVTNTYDV  154 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG--GGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccc--cCCCcEEEEECChHHHHHhCCCCceE
Confidence            456799999999999999998654 348999999999999999988642100  00257899999886642 22478999


Q ss_pred             EeechhhhcCChhhH--HHHHHHHHHcCCCCcEEEEEe
Q 018970          234 IWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~--~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |++....++.+...+  ..+++.+.++|+|||.+++..
T Consensus       155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            998654333232233  689999999999999999874

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.26  E-value=3.7e-12  Score=116.74  Aligned_cols=105  Identities=11%  Similarity=0.054  Sum_probs=75.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEE--EcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--CVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~--~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+|||+|.++..+++.  ..|+++|+|+ |+..+++..    ........++.+.  ++|+.+++  +++||
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~----~~~~~~~~~v~~~~~~~D~~~l~--~~~fD  150 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKP----RLVETFGWNLITFKSKVDVTKME--PFQAD  150 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCC----CCCCCTTGGGEEEECSCCGGGCC--CCCCS
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhch----hhhhhcCCCeEEEeccCcHhhCC--CCCcC
Confidence            467789999999999999998876  4699999998 643332211    0000112268888  88988876  47899


Q ss_pred             EEeechhhhcCCh---hhH--HHHHHHHHHcCCCCc--EEEEEe
Q 018970          233 VIWVQWCIGHLTD---DDF--VSFFKRAKVGLKPGG--FFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~---~d~--~~~l~~~~~~LkpgG--~lii~~  269 (348)
                      +|++..+ ++...   +..  ..+++.+.++|||||  .|++..
T Consensus       151 ~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          151 TVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             EEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            9999877 44321   111  147899999999999  998865

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.26  E-value=2.5e-12  Score=119.58  Aligned_cols=110  Identities=15%  Similarity=0.108  Sum_probs=80.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCC--CCCCCcCCCcceeEEEcCCCCC-CCCCCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP--ENHMAPDMHKATNFFCVPLQDF-TPETGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~--~~~~~~~~~~~i~~~~~d~~~~-~~~~~~f  231 (348)
                      .++.+|||||||+|.++..++.... .+|+++|+|+.+++.|++++..  .++    ...++++...|+.++ +...++|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~----~~~rv~v~~~Da~~~l~~~~~~f  169 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY----SSSKLTLHVGDGFEFMKQNQDAF  169 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----GCTTEEEEESCHHHHHHTCSSCE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhccc----CCCcEEEEECcHHHHHhhCCCCc
Confidence            4557999999999999999986643 4899999999999999998643  111    024689999987653 2234789


Q ss_pred             eEEeechhhhcCChh--hHHHHHHHHHHcCCCCcEEEEEe
Q 018970          232 DVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~--d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |+|++....+..+..  ....+++.+.++|+|||+|++..
T Consensus       170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            999986543322211  13578999999999999999865

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.26  E-value=6.1e-12  Score=121.17  Aligned_cols=110  Identities=13%  Similarity=0.056  Sum_probs=86.8

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC----CCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD  232 (348)
                      ++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...++     ..++++.+.|+.++..    ..++||
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD  291 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----EDRMKFIVGSAFEEMEKLQKKGEKFD  291 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CccceEEECCHHHHHHHHHhhCCCCC
Confidence            5679999999999999999977666899999999999999999876433     2378999999876532    246899


Q ss_pred             EEeechhhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       233 ~Ii~~~~l~~~~~-------~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      +|++.........       .+...++..+.++|+|||.+++....
T Consensus       292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            9998644322111       35678999999999999999888643

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.25  E-value=4.5e-12  Score=118.37  Aligned_cols=110  Identities=15%  Similarity=0.254  Sum_probs=83.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCC--CC-CCCcCCCcceeEEEcCCCCC-CCCCCc
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP--EN-HMAPDMHKATNFFCVPLQDF-TPETGR  230 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~--~~-~~~~~~~~~i~~~~~d~~~~-~~~~~~  230 (348)
                      .++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.|++++..  .+ +    ...++++..+|+.++ +...++
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~----~~~~v~~~~~D~~~~l~~~~~~  151 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAF----DDPRAVLVIDDARAYLERTEER  151 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG----GCTTEEEEESCHHHHHHHCCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccc----cCCceEEEEchHHHHHHhcCCC
Confidence            345799999999999999998653 34799999999999999998642  10 0    024689999998763 223478


Q ss_pred             eeEEeechhhhc---CChhh--HHHHHHHHHHcCCCCcEEEEEe
Q 018970          231 YDVIWVQWCIGH---LTDDD--FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       231 fD~Ii~~~~l~~---~~~~d--~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ||+|++....+.   .+...  ...+++.+.++|+|||.+++..
T Consensus       152 fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            999999765543   11112  3689999999999999999864

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.25  E-value=3.9e-12  Score=118.78  Aligned_cols=111  Identities=20%  Similarity=0.256  Sum_probs=79.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCC-CcceeEEEcCCCCC-CCCCCcee
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDM-HKATNFFCVPLQDF-TPETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~-~~~i~~~~~d~~~~-~~~~~~fD  232 (348)
                      .++.+|||||||+|.++..++.... .+|+++|+|+.+++.|++++....   ... ..++++...|+.++ +...++||
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~---~~~~~~rv~~~~~D~~~~l~~~~~~fD  183 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS---CGFSHPKLDLFCGDGFEFLKNHKNEFD  183 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTS---GGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhc---cccCCCCEEEEEChHHHHHHhcCCCce
Confidence            3457999999999999999986543 489999999999999999986420   001 34689999988663 22347899


Q ss_pred             EEeechhhhcCChhhH--HHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~--~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++...-+..+...+  ..+++.+.++|+|||++++..
T Consensus       184 ~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          184 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            9998654222221222  689999999999999999875

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.25  E-value=8.7e-12  Score=128.28  Aligned_cols=130  Identities=15%  Similarity=0.151  Sum_probs=97.7

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CCCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~Ii  235 (348)
                      ++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...++.    ..++++.+.|+.++ +...++||+|+
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~----~~~v~~i~~D~~~~l~~~~~~fD~Ii  614 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT----GRAHRLIQADCLAWLREANEQFDLIF  614 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----STTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHhcCCCccEEE
Confidence            46799999999999999998877768999999999999999998765441    14689999998774 22347899999


Q ss_pred             echhhh--------cCC-hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          236 VQWCIG--------HLT-DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       236 ~~~~l~--------~~~-~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      +.....        .+. ..+...+++.+.++|+|||+|+++.+...           +...    .+.|++.|++...
T Consensus       615 ~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~-----------~~~~----~~~l~~~g~~~~~  678 (703)
T 3v97_A          615 IDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRG-----------FRMD----LDGLAKLGLKAQE  678 (703)
T ss_dssp             ECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTT-----------CCCC----HHHHHHTTEEEEE
T ss_pred             ECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-----------cccC----HHHHHHcCCceee
Confidence            865321        011 13678899999999999999998875422           1111    4677888987544

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.24  E-value=1.8e-11  Score=108.71  Aligned_cols=103  Identities=12%  Similarity=-0.060  Sum_probs=85.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||||||.|.++..++  ....|+++|+|+.|++.+++.+...       +....+...|+..-+++ ++||+|+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~-------g~~~~~~v~D~~~~~~~-~~~DvvL  173 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREK-------DWDFTFALQDVLCAPPA-EAGDLAL  173 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHT-------TCEEEEEECCTTTSCCC-CBCSEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhc-------CCCceEEEeecccCCCC-CCcchHH
Confidence            467899999999999999877  3447999999999999999987543       35678889998887766 6999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +.-++||+.+......+ ++.+.|+++|.++-.+
T Consensus       174 llk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          174 IFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             EESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             HHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence            99999999865444455 8888999998887766

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.24  E-value=5.9e-12  Score=115.26  Aligned_cols=135  Identities=11%  Similarity=0.022  Sum_probs=96.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC----CC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ET  228 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~  228 (348)
                      +.++.+|||+|||+|..+..++....  ..|+++|+|+.+++.+++++...++      .++++.+.|+.+++.    ..
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~~~~~~~~  154 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV------LNTIIINADMRKYKDYLLKNE  154 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCHHHHHHHHHHTT
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC------CcEEEEeCChHhcchhhhhcc
Confidence            46778999999999999999987532  4799999999999999998876543      368899999877643    24


Q ss_pred             CceeEEeechhhhcC---C------h-------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHH
Q 018970          229 GRYDVIWVQWCIGHL---T------D-------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYF  292 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~---~------~-------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l  292 (348)
                      ++||+|++.......   .      .       .....+++++.++|||||.++++.......           -+.+.+
T Consensus       155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~-----------ene~~v  223 (274)
T 3ajd_A          155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVE-----------ENEEVI  223 (274)
T ss_dssp             CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTT-----------SSHHHH
T ss_pred             ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChH-----------HhHHHH
Confidence            689999986322110   0      0       245789999999999999999976322100           124455


Q ss_pred             HHHHHh-cCCeEEEE
Q 018970          293 KELFSR-CGLHIYKS  306 (348)
Q Consensus       293 ~~l~~~-aGf~~v~~  306 (348)
                      ..++++ .+|+++..
T Consensus       224 ~~~l~~~~~~~~~~~  238 (274)
T 3ajd_A          224 KYILQKRNDVELIII  238 (274)
T ss_dssp             HHHHHHCSSEEEECC
T ss_pred             HHHHHhCCCcEEecC
Confidence            666655 46776543

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.24  E-value=2e-11  Score=115.06  Aligned_cols=123  Identities=9%  Similarity=0.032  Sum_probs=94.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++.. +. +...|+++|+|+.+++.|++++...++     ..++.+.++|+.++.   ++||+|+
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l-----~~~v~~~~~D~~~~~---~~fD~Vi  263 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKL-----EHKIIPILSDVREVD---VKGNRVI  263 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCGGGCC---CCEEEEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECChHHhc---CCCcEEE
Confidence            4667999999999999999 76 555899999999999999999876543     346899999998876   6899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhc-CCeEEEEeec
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRC-GLHIYKSKDQ  309 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~a-Gf~~v~~~~~  309 (348)
                      +.....      ...+++.+.++|+|||.+++.+....               .+.+.+.++++ |++++.....
T Consensus       264 ~dpP~~------~~~~l~~~~~~L~~gG~l~~~~~~~~---------------~~~~~~~l~~~~~~~i~~~~~v  317 (336)
T 2yx1_A          264 MNLPKF------AHKFIDKALDIVEEGGVIHYYTIGKD---------------FDKAIKLFEKKCDCEVLEKRIV  317 (336)
T ss_dssp             ECCTTT------GGGGHHHHHHHEEEEEEEEEEEEESS---------------SHHHHHHHHHHSEEEEEEEEEE
T ss_pred             ECCcHh------HHHHHHHHHHHcCCCCEEEEEEeecC---------------chHHHHHHHHhcCCcEEEEEEE
Confidence            864322      23788999999999999998764321               23455666666 7776654443

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.23  E-value=7e-12  Score=117.44  Aligned_cols=111  Identities=22%  Similarity=0.276  Sum_probs=82.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCC-CcceeEEEcCCCCCC-CCCCcee
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDM-HKATNFFCVPLQDFT-PETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~-~~~~~fD  232 (348)
                      .++.+|||||||+|.++..++... ..+|+++|+|+.+++.|++++....   ... ..++++...|+.++. ..+++||
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~---~~~~~~~v~~~~~D~~~~l~~~~~~fD  191 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNIS---CGYEDKRVNVFIEDASKFLENVTNTYD  191 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS---GGGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc---cccCCCcEEEEEccHHHHHhhcCCCce
Confidence            345799999999999999998653 3489999999999999999986420   001 246899999976632 2246899


Q ss_pred             EEeechhhhcCChhhH--HHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~--~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++...-..-+...+  ..+++.+.++|+|||++++..
T Consensus       192 vIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          192 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             EEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            9998653211111222  689999999999999999864

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.23  E-value=2.5e-11  Score=111.72  Aligned_cols=103  Identities=14%  Similarity=0.103  Sum_probs=77.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..++..+. .|+++|+|+.|++.+++++...+.     ..++++.++|+.+++.+  .||+|
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~D~~~~~~~--~fD~v   97 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPV-----ASKLQVLVGDVLKTDLP--FFDTC   97 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEESCTTTSCCC--CCSEE
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcceecccch--hhcEE
Confidence            45678999999999999999998866 699999999999999998865432     25799999999887654  79999


Q ss_pred             eechhhhcCChhhHHHHH--------------HHH--HHcCCCCcEEE
Q 018970          235 WVQWCIGHLTDDDFVSFF--------------KRA--KVGLKPGGFFV  266 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l--------------~~~--~~~LkpgG~li  266 (348)
                      +++..++..+ +-+..++              +++  .++|+|||.++
T Consensus        98 v~nlpy~~~~-~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           98 VANLPYQISS-PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             EEECCGGGHH-HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             EEecCcccch-HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            9975544322 1122222              222  35889999764

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.22  E-value=3.2e-11  Score=104.50  Aligned_cols=123  Identities=14%  Similarity=0.033  Sum_probs=84.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-------
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-------  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-------  227 (348)
                      ..++.+|||+|||+|.++..++++ ...|+++|+++..         .        ..++++.++|+.+....       
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~---------~--------~~~v~~~~~D~~~~~~~~~~~~~~   84 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME---------E--------IAGVRFIRCDIFKETIFDDIDRAL   84 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC---------C--------CTTCEEEECCTTSSSHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc---------c--------CCCeEEEEccccCHHHHHHHHHHh
Confidence            457789999999999999999877 4479999998741         0        24689999999876411       


Q ss_pred             ----CCceeEEeechhhhcCC--------h-hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHH
Q 018970          228 ----TGRYDVIWVQWCIGHLT--------D-DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKE  294 (348)
Q Consensus       228 ----~~~fD~Ii~~~~l~~~~--------~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~  294 (348)
                          .++||+|++........        . +....+++.+.++|||||.|++......              ....+..
T Consensus        85 ~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~--------------~~~~~~~  150 (191)
T 3dou_A           85 REEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD--------------MTNDFIA  150 (191)
T ss_dssp             HHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST--------------HHHHHHH
T ss_pred             hcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC--------------CHHHHHH
Confidence                14899999865322111        0 1245789999999999999998763211              1234556


Q ss_pred             HHHhcCCeEEEEeecC
Q 018970          295 LFSRCGLHIYKSKDQK  310 (348)
Q Consensus       295 l~~~aGf~~v~~~~~~  310 (348)
                      .++. .|..+......
T Consensus       151 ~l~~-~F~~v~~~kP~  165 (191)
T 3dou_A          151 IWRK-NFSSYKISKPP  165 (191)
T ss_dssp             HHGG-GEEEEEEECC-
T ss_pred             HHHH-hcCEEEEECCC
Confidence            6644 57766654433

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.21  E-value=5.7e-11  Score=114.14  Aligned_cols=107  Identities=11%  Similarity=-0.037  Sum_probs=81.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~I  234 (348)
                      .++.+|||+|||+|.++..++..+.. |+++|+|+.+++.|++++...++       ...+.+.|+.++. ...+.||+|
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~-------~~~~~~~D~~~~l~~~~~~fD~I  284 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGL-------RVDIRHGEALPTLRGLEGPFHHV  284 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTC-------CCEEEESCHHHHHHTCCCCEEEE
T ss_pred             cCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCC-------CCcEEEccHHHHHHHhcCCCCEE
Confidence            35789999999999999999987776 99999999999999999865433       1346678876642 112459999


Q ss_pred             eechhhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          235 WVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       235 i~~~~l~~~~~-------~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      ++......-..       .+...+++.+.++|+|||.|++...
T Consensus       285 i~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          285 LLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             EECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            98654311111       2457889999999999999997664

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.20  E-value=3.1e-11  Score=116.28  Aligned_cols=134  Identities=15%  Similarity=0.073  Sum_probs=96.4

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC----CCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD  232 (348)
                      ++.+|||+|||+|.++..++..+...|+++|+|+.+++.|++++...++.    ..++++.+.|+.++..    ...+||
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~----~~~v~~~~~D~~~~~~~~~~~~~~fD  295 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECCHHHHHHHHHhcCCCCC
Confidence            45799999999999999999877668999999999999999998654320    1268999999877532    136899


Q ss_pred             EEeechhhhcC-----C--hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeE
Q 018970          233 VIWVQWCIGHL-----T--DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHI  303 (348)
Q Consensus       233 ~Ii~~~~l~~~-----~--~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~  303 (348)
                      +|++.......     .  ......++..+.++|+|||+++++.+......  +       .-.+.+.+.+.++|+.+
T Consensus       296 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~-------~~~~~i~~~~~~~g~~~  364 (396)
T 3c0k_A          296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTS--D-------LFQKIIADAAIDAGRDV  364 (396)
T ss_dssp             EEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCH--H-------HHHHHHHHHHHHHTCCE
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCH--H-------HHHHHHHHHHHHcCCeE
Confidence            99997543111     0  03678899999999999999999875322100  0       01234556777888543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.20  E-value=1.3e-11  Score=114.41  Aligned_cols=109  Identities=17%  Similarity=0.161  Sum_probs=79.2

Q ss_pred             CCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCC--CCCCCcCCCcceeEEEcCCCCC-CCCCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP--ENHMAPDMHKATNFFCVPLQDF-TPETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~--~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD  232 (348)
                      .+.+|||||||+|.++..++... ..+|+++|+|+.+++.|++++..  .++    ...++++...|+.++ +...++||
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~----~~~~v~~~~~D~~~~l~~~~~~fD  165 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF----DDPRAEIVIANGAEYVRKFKNEFD  165 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG----GCTTEEEEESCHHHHGGGCSSCEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc----CCCceEEEECcHHHHHhhCCCCce
Confidence            45799999999999999998663 34899999999999999998732  000    024689999987653 22346899


Q ss_pred             EEeechhhhcCCh-h--hHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTD-D--DFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~-~--d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++...-+.+.. .  ....+++.+.++|+|||++++..
T Consensus       166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            9998543221111 0  12689999999999999999864

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.18  E-value=1.5e-11  Score=105.93  Aligned_cols=99  Identities=23%  Similarity=0.272  Sum_probs=72.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC----------CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEE-EcCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF----------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF-CVPLQD  223 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~----------~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~-~~d~~~  223 (348)
                      +.++.+|||+|||+|.++..++....          ..|+++|+|+.+         .        ..++.+. ..|+.+
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~--------~~~~~~~~~~d~~~   82 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P--------LEGATFLCPADVTD   82 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C--------CTTCEEECSCCTTS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c--------CCCCeEEEeccCCC
Confidence            45678999999999999999998743          479999999832         0        1347778 788765


Q ss_pred             CC--------CCCCceeEEeechhhhc----CChhh-----HHHHHHHHHHcCCCCcEEEEEec
Q 018970          224 FT--------PETGRYDVIWVQWCIGH----LTDDD-----FVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       224 ~~--------~~~~~fD~Ii~~~~l~~----~~~~d-----~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      ..        .++++||+|++..+++.    ..+..     ...+++++.++|||||.|++...
T Consensus        83 ~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           83 PRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence            42        22358999998664442    22110     14789999999999999998763

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.18  E-value=1.8e-11  Score=117.31  Aligned_cols=108  Identities=20%  Similarity=0.140  Sum_probs=85.0

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC----CCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD  232 (348)
                      ++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++...++      .++++.++|+.++..    ..++||
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~------~~~~~~~~d~~~~~~~~~~~~~~fD  281 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEKEGERFD  281 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CCceEEECCHHHHHHHHHhcCCCee
Confidence            5679999999999999999977 55799999999999999999865443      248899999877532    146899


Q ss_pred             EEeechhhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       233 ~Ii~~~~l~~~~~-------~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      +|++.........       .+...++..+.++|+|||.+++....
T Consensus       282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            9998543321111       25678999999999999999998753

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.14  E-value=7.5e-11  Score=115.29  Aligned_cols=134  Identities=11%  Similarity=0.049  Sum_probs=96.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~f  231 (348)
                      +.++.+|||+|||+|..+..++....  ..|+++|+|+.+++.+++++...|+      . +.+.+.|+.++.. ..++|
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~------~-v~~~~~Da~~l~~~~~~~F  171 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA------P-LAVTQAPPRALAEAFGTYF  171 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC------C-CEEECSCHHHHHHHHCSCE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------e-EEEEECCHHHhhhhccccC
Confidence            56778999999999999999997744  3799999999999999999876543      2 7788888776541 24789


Q ss_pred             eEEeec------hhhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970          232 DVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY  291 (348)
Q Consensus       232 D~Ii~~------~~l~~~~~-------~d-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~  291 (348)
                      |+|++.      .++.+-++       ++       ...+++.+.++|||||.|+++.-....           .-+.+.
T Consensus       172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~-----------eEne~v  240 (464)
T 3m6w_A          172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP-----------EENEGV  240 (464)
T ss_dssp             EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG-----------GGTHHH
T ss_pred             CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch-----------hcCHHH
Confidence            999952      22332221       11       267899999999999999987522110           014455


Q ss_pred             HHHHHHhc-CCeEEEE
Q 018970          292 FKELFSRC-GLHIYKS  306 (348)
Q Consensus       292 l~~l~~~a-Gf~~v~~  306 (348)
                      +..++++. +|+++..
T Consensus       241 v~~~l~~~~~~~l~~~  256 (464)
T 3m6w_A          241 VAHFLKAHPEFRLEDA  256 (464)
T ss_dssp             HHHHHHHCTTEEEECC
T ss_pred             HHHHHHHCCCcEEEec
Confidence            66777776 5776654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.14  E-value=9.4e-11  Score=114.06  Aligned_cols=133  Identities=15%  Similarity=0.086  Sum_probs=97.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~f  231 (348)
                      +.++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++...++       ++.+.+.|+.+++  .+.++|
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-------~~~~~~~D~~~~~~~~~~~~f  316 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-------KATVKQGDGRYPSQWCGEQQF  316 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-------CCEEEECCTTCTHHHHTTCCE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-------CeEEEeCchhhchhhcccCCC
Confidence            46778999999999999999998765 3799999999999999998876432       4688899988765  344689


Q ss_pred             eEEee------chhhhcCCh-------hhH-------HHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970          232 DVIWV------QWCIGHLTD-------DDF-------VSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY  291 (348)
Q Consensus       232 D~Ii~------~~~l~~~~~-------~d~-------~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~  291 (348)
                      |+|++      ..++++.++       +++       ..+++++.++|||||.+++++-.....           -....
T Consensus       317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~-----------ene~~  385 (429)
T 1sqg_A          317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE-----------ENSLQ  385 (429)
T ss_dssp             EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG-----------GTHHH
T ss_pred             CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh-----------hHHHH
Confidence            99996      234444432       111       478999999999999999986322100           12345


Q ss_pred             HHHHHHhc-CCeEEE
Q 018970          292 FKELFSRC-GLHIYK  305 (348)
Q Consensus       292 l~~l~~~a-Gf~~v~  305 (348)
                      +...+++. +|+++.
T Consensus       386 v~~~l~~~~~~~~~~  400 (429)
T 1sqg_A          386 IKAFLQRTADAELCE  400 (429)
T ss_dssp             HHHHHHHCTTCEECS
T ss_pred             HHHHHHhCCCCEEeC
Confidence            66666664 677654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.12  E-value=7.5e-10  Score=107.79  Aligned_cols=133  Identities=15%  Similarity=0.126  Sum_probs=97.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCc
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR  230 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~  230 (348)
                      ..++.+|||+|||+|.++..++.. ...|+++|+|+.+++.|++++...++      .+++|.+.|+.+..    ...++
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~------~~v~f~~~d~~~~l~~~~~~~~~  356 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL------QNVTFYHENLEEDVTKQPWAKNG  356 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCTTSCCSSSGGGTTC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEECCHHHHhhhhhhhcCC
Confidence            456679999999999999999876 44799999999999999998865432      37999999998732    23468


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      ||+|+++......     ..+++.+.+ ++|+++++++.+..               +...-...|.+.||.+.......
T Consensus       357 fD~Vv~dPPr~g~-----~~~~~~l~~-~~p~~ivyvsc~p~---------------tlard~~~l~~~Gy~~~~~~~~d  415 (433)
T 1uwv_A          357 FDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVSCNPA---------------TLARDSEALLKAGYTIARLAMLD  415 (433)
T ss_dssp             CSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEESCHH---------------HHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             CCEEEECCCCccH-----HHHHHHHHh-cCCCeEEEEECChH---------------HHHhhHHHHHHCCcEEEEEEEec
Confidence            9999986554432     245555544 68999998876421               11112356677899998877666


Q ss_pred             CCCcc
Q 018970          311 GLPEE  315 (348)
Q Consensus       311 ~~~~~  315 (348)
                      .||..
T Consensus       416 ~Fp~t  420 (433)
T 1uwv_A          416 MFPHT  420 (433)
T ss_dssp             CSTTS
T ss_pred             cCCCC
Confidence            67653

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.12  E-value=1.5e-10  Score=113.99  Aligned_cols=107  Identities=14%  Similarity=0.136  Sum_probs=83.9

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCceeE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDV  233 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~  233 (348)
                      ++.+|||+|||+|..+..++....  ..|+++|+|+.+++.+++++...|+      .++.+.+.|+.+++. ..++||+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~------~nv~~~~~D~~~~~~~~~~~fD~  190 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI------SNVALTHFDGRVFGAAVPEMFDA  190 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCCSTTHHHHSTTCEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHhhhhccccCCE
Confidence            778999999999999999998743  3799999999999999999875443      368899999887653 3468999


Q ss_pred             Eeec------hhhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          234 IWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~------~~l~~~~~-------~d-------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |++.      .++.+.++       ++       ...+|+++.++|||||.|++++
T Consensus       191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT  246 (479)
T 2frx_A          191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST  246 (479)
T ss_dssp             EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            9972      23333221       11       3478999999999999999875

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.12  E-value=1.9e-11  Score=113.68  Aligned_cols=103  Identities=10%  Similarity=-0.006  Sum_probs=72.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcC----CHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCCCCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~----S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~  229 (348)
                      +.++.+|||||||+|.++..+++.  ..|+++|+    ++.+++.+.  ....+      ..++.+.+. |+.+++  .+
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~------~~~v~~~~~~D~~~l~--~~  147 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG------WNLVRLQSGVDVFFIP--PE  147 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT------GGGEEEECSCCTTTSC--CC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC------CCCeEEEeccccccCC--cC
Confidence            466789999999999999998876  36999999    565442110  01100      146888888 887765  36


Q ss_pred             ceeEEeechhhh---cCChh-hHHHHHHHHHHcCCCCcEEEEEe
Q 018970          230 RYDVIWVQWCIG---HLTDD-DFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       230 ~fD~Ii~~~~l~---~~~~~-d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +||+|+|..+++   +..+. ....+|+.+.++|||||.|++..
T Consensus       148 ~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv  191 (305)
T 2p41_A          148 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  191 (305)
T ss_dssp             CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            899999977653   22211 11258899999999999998854

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.11  E-value=9.5e-11  Score=114.39  Aligned_cols=135  Identities=12%  Similarity=0.007  Sum_probs=97.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f  231 (348)
                      +.++.+|||+|||+|..+..++....  ..|+++|+|+.+++.+++++...|+      .++.+.+.|..++. ..+++|
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~------~nv~v~~~Da~~l~~~~~~~F  176 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV------SNAIVTNHAPAELVPHFSGFF  176 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC------SSEEEECCCHHHHHHHHTTCE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhhhccccC
Confidence            56788999999999999999987633  3799999999999999999876543      35788888877654 123789


Q ss_pred             eEEeech------hhhcCCh-------h-------hHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970          232 DVIWVQW------CIGHLTD-------D-------DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY  291 (348)
Q Consensus       232 D~Ii~~~------~l~~~~~-------~-------d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~  291 (348)
                      |+|++..      ++.+-++       +       ....+++.+.++|||||.|++++-....           .-+.+.
T Consensus       177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~-----------eEne~v  245 (456)
T 3m4x_A          177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP-----------EENEEI  245 (456)
T ss_dssp             EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG-----------GGTHHH
T ss_pred             CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc-----------ccCHHH
Confidence            9999743      2222110       1       1237899999999999999987522110           024556


Q ss_pred             HHHHHHhcCCeEEEE
Q 018970          292 FKELFSRCGLHIYKS  306 (348)
Q Consensus       292 l~~l~~~aGf~~v~~  306 (348)
                      +..++++.||+++..
T Consensus       246 v~~~l~~~~~~l~~~  260 (456)
T 3m4x_A          246 ISWLVENYPVTIEEI  260 (456)
T ss_dssp             HHHHHHHSSEEEECC
T ss_pred             HHHHHHhCCCEEEec
Confidence            778888888777654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.11  E-value=3.9e-10  Score=108.90  Aligned_cols=143  Identities=15%  Similarity=0.122  Sum_probs=97.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~--~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      .++.+|||+|||+|.++..++++.  ...++|+|+++.+++.|               .++++.+.|+.++... ++||+
T Consensus        38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------~~~~~~~~D~~~~~~~-~~fD~  101 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILADFLLWEPG-EAFDL  101 (421)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEESCGGGCCCS-SCEEE
T ss_pred             CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------CCCcEEeCChhhcCcc-CCCCE
Confidence            345699999999999999998763  34799999999998755               2478899998887543 68999


Q ss_pred             Eeechhhhc----------CChhh-----------------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCcee
Q 018970          234 IWVQWCIGH----------LTDDD-----------------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSIT  286 (348)
Q Consensus       234 Ii~~~~l~~----------~~~~d-----------------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~  286 (348)
                      |+++..+..          +.++.                 ...+++++.++|+|||.+++.....   +. .      .
T Consensus       102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~---~l-~------~  171 (421)
T 2ih2_A          102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT---WL-V------L  171 (421)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG---GG-T------C
T ss_pred             EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH---Hh-c------C
Confidence            999755432          22111                 2267999999999999998875321   10 0      0


Q ss_pred             cCHHHHHHHHHhcCCeEEEEeecCCCCccceEEEEEEEe
Q 018970          287 RSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALT  325 (348)
Q Consensus       287 ~s~~~l~~l~~~aGf~~v~~~~~~~~~~~l~~v~~~~l~  325 (348)
                      ...+.+++.+.+.|+..+.... ..|+.......++.++
T Consensus       172 ~~~~~lr~~l~~~~~~~i~~l~-~~F~~~~~~~~il~~~  209 (421)
T 2ih2_A          172 EDFALLREFLAREGKTSVYYLG-EVFPQKKVSAVVIRFQ  209 (421)
T ss_dssp             GGGHHHHHHHHHHSEEEEEEEE-SCSTTCCCCEEEEEEE
T ss_pred             ccHHHHHHHHHhcCCeEEEECC-CCCCCCCccEEEEEEE
Confidence            1235688888888873333323 4555544445555544

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.06  E-value=7e-10  Score=108.40  Aligned_cols=159  Identities=12%  Similarity=0.069  Sum_probs=106.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY--------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP  220 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~--------------~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d  220 (348)
                      +.++.+|||.|||+|.++..++...              ...++|+|+++.+++.|+.++...++.    ..+.++.++|
T Consensus       169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~----~~~~~i~~gD  244 (445)
T 2okc_A          169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----TDRSPIVCED  244 (445)
T ss_dssp             CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----SSCCSEEECC
T ss_pred             CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC----cCCCCEeeCC
Confidence            4566799999999999998887542              236999999999999999876543321    0157788898


Q ss_pred             CCCCCCCCCceeEEeechhhhcCChhh---------------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCce
Q 018970          221 LQDFTPETGRYDVIWVQWCIGHLTDDD---------------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSI  285 (348)
Q Consensus       221 ~~~~~~~~~~fD~Ii~~~~l~~~~~~d---------------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~  285 (348)
                      ....+.. ++||+|+++..+.+....+               ...+++++.++|||||.+++..+..   ..+...    
T Consensus       245 ~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~---~L~~~~----  316 (445)
T 2okc_A          245 SLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN---VLFEAG----  316 (445)
T ss_dssp             TTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH---HHHCST----
T ss_pred             CCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc---ccccCc----
Confidence            8776544 4899999998887654211               2478999999999999998875321   111100    


Q ss_pred             ecCHHHHHH-HHHhcCCeEEEEeecCCCCccceEEEEEEEeec
Q 018970          286 TRSDFYFKE-LFSRCGLHIYKSKDQKGLPEELFAVKMYALTAE  327 (348)
Q Consensus       286 ~~s~~~l~~-l~~~aGf~~v~~~~~~~~~~~l~~v~~~~l~~~  327 (348)
                        ....+++ +++..++..+.......|...-.++.++.++..
T Consensus       317 --~~~~iR~~L~~~~~l~~ii~lp~~~F~~t~v~t~Il~~~k~  357 (445)
T 2okc_A          317 --AGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKG  357 (445)
T ss_dssp             --HHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEES
T ss_pred             --HHHHHHHHHHhcCcEEEEEeCCCCCccCCCCCEEEEEEECC
Confidence              1234554 666766666554444445443445556555543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.03  E-value=7.2e-10  Score=107.55  Aligned_cols=100  Identities=22%  Similarity=0.235  Sum_probs=77.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||+|||+|.++..++.... .|+++|+|+.|++.|++++...++      . ++|.++|+.++...  +||+|+
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl------~-v~~~~~d~~~~~~~--~fD~Vv  358 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNV------D-AEFEVASDREVSVK--GFDTVI  358 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC------C-EEEEECCTTTCCCT--TCSEEE
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC------c-EEEEECChHHcCcc--CCCEEE
Confidence            4567999999999999999987644 699999999999999998764322      2 88999999887533  899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +...-..+.    ..+++.+. .|+|||.++++.+
T Consensus       359 ~dPPr~g~~----~~~~~~l~-~l~p~givyvsc~  388 (425)
T 2jjq_A          359 VDPPRAGLH----PRLVKRLN-REKPGVIVYVSCN  388 (425)
T ss_dssp             ECCCTTCSC----HHHHHHHH-HHCCSEEEEEESC
T ss_pred             EcCCccchH----HHHHHHHH-hcCCCcEEEEECC
Confidence            976543332    23555554 4899999999863

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.03  E-value=5.6e-10  Score=102.72  Aligned_cols=117  Identities=10%  Similarity=0.005  Sum_probs=83.8

Q ss_pred             CCCCCcEEEEec------cccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeE-EEcCCCCCC
Q 018970          155 NNQHLVALDCGS------GIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF-FCVPLQDFT  225 (348)
Q Consensus       155 ~~~~~~VLDvGc------G~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~-~~~d~~~~~  225 (348)
                      +.++.+|||+||      |+|.  ..++....  ..|+++|+|+.        +           .++++ .++|+.+++
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v-----------~~v~~~i~gD~~~~~  119 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V-----------SDADSTLIGDCATVH  119 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B-----------CSSSEEEESCGGGCC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C-----------CCCEEEEECccccCC
Confidence            677889999999      5576  33344433  37999999987        1           14778 999998876


Q ss_pred             CCCCceeEEeechhhhc--------CC-hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHH
Q 018970          226 PETGRYDVIWVQWCIGH--------LT-DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELF  296 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~--------~~-~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~  296 (348)
                      .+ ++||+|+++...+.        .. .+....+++.+.++|||||.|++.....              .....+.+++
T Consensus       120 ~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~--------------~~~~~l~~~l  184 (290)
T 2xyq_A          120 TA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH--------------SWNADLYKLM  184 (290)
T ss_dssp             CS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS--------------SCCHHHHHHH
T ss_pred             cc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc--------------CCHHHHHHHH
Confidence            54 68999999754221        11 1235689999999999999999975321              1123688899


Q ss_pred             HhcCCeEEEEe
Q 018970          297 SRCGLHIYKSK  307 (348)
Q Consensus       297 ~~aGf~~v~~~  307 (348)
                      ++.||..+...
T Consensus       185 ~~~GF~~v~~~  195 (290)
T 2xyq_A          185 GHFSWWTAFVT  195 (290)
T ss_dssp             TTEEEEEEEEE
T ss_pred             HHcCCcEEEEE
Confidence            99999877665

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.02  E-value=1.3e-09  Score=97.95  Aligned_cols=76  Identities=21%  Similarity=0.227  Sum_probs=61.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC-CceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~fD~  233 (348)
                      ..++.+|||||||+|.++..++..+. .|+++|+|+.|++.+++++..        ..++++.++|+.+++.+. ..| .
T Consensus        28 ~~~~~~VLDiG~G~G~lt~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~--------~~~v~~~~~D~~~~~~~~~~~~-~   97 (244)
T 1qam_A           28 LNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVD--------HDNFQVLNKDILQFKFPKNQSY-K   97 (244)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTT--------CCSEEEECCCGGGCCCCSSCCC-E
T ss_pred             CCCCCEEEEEeCCchHHHHHHHHcCC-eEEEEECCHHHHHHHHHhhcc--------CCCeEEEEChHHhCCcccCCCe-E
Confidence            46778999999999999999998874 699999999999999998864        246899999999887653 345 4


Q ss_pred             Eeechhh
Q 018970          234 IWVQWCI  240 (348)
Q Consensus       234 Ii~~~~l  240 (348)
                      |+++..+
T Consensus        98 vv~nlPy  104 (244)
T 1qam_A           98 IFGNIPY  104 (244)
T ss_dssp             EEEECCG
T ss_pred             EEEeCCc
Confidence            5555444

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.02  E-value=4.9e-10  Score=103.80  Aligned_cols=79  Identities=15%  Similarity=0.098  Sum_probs=60.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++..+. .|+++|+|+.|++.+++++...+      ..++++.++|+.+++.  .+||+|
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~------~~~v~~~~~D~~~~~~--~~~D~V  110 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEG------YNNLEVYEGDAIKTVF--PKFDVC  110 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTT------CCCEEC----CCSSCC--CCCSEE
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC------CCceEEEECchhhCCc--ccCCEE
Confidence            45678999999999999999987644 69999999999999999874322      1468899999988765  479999


Q ss_pred             eechhhhc
Q 018970          235 WVQWCIGH  242 (348)
Q Consensus       235 i~~~~l~~  242 (348)
                      +++...+.
T Consensus       111 v~n~py~~  118 (299)
T 2h1r_A          111 TANIPYKI  118 (299)
T ss_dssp             EEECCGGG
T ss_pred             EEcCCccc
Confidence            99766553

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.02  E-value=3.9e-12  Score=114.45  Aligned_cols=103  Identities=17%  Similarity=0.122  Sum_probs=77.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC-CceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~fD~  233 (348)
                      ..++.+|||+|||+|.++..++..+ ..|+++|+|+.|++.+++++..        ..++++.++|+.+++.+. ++| .
T Consensus        27 ~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~--------~~~v~~~~~D~~~~~~~~~~~f-~   96 (245)
T 1yub_A           27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL--------NTRVTLIHQDILQFQFPNKQRY-K   96 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT--------CSEEEECCSCCTTTTCCCSSEE-E
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc--------CCceEEEECChhhcCcccCCCc-E
Confidence            4567899999999999999999887 5699999999999988877642        357899999999987653 678 6


Q ss_pred             Eeechhhh-----------cCChhhHHHHH----HHHHHcCCCCcEEEEEe
Q 018970          234 IWVQWCIG-----------HLTDDDFVSFF----KRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~-----------~~~~~d~~~~l----~~~~~~LkpgG~lii~~  269 (348)
                      |+++...+           |..  +...++    +.+.++|+|||.+.+..
T Consensus        97 vv~n~Py~~~~~~~~~~~~~~~--~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           97 IVGNIPYHLSTQIIKKVVFESR--ASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             EEEECCSSSCHHHHHHHHHHCC--CEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             EEEeCCccccHHHHHHHHhCCC--CCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            66653222           211  112334    66899999999877643

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.98  E-value=2.1e-09  Score=99.16  Aligned_cols=79  Identities=13%  Similarity=0.042  Sum_probs=67.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++... ..|+++|+|+.|++.+++++..        ..++++.++|+.+++.+...||+|
T Consensus        48 ~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~--------~~~v~vi~gD~l~~~~~~~~fD~I  118 (295)
T 3gru_A           48 LTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKEL--------YNNIEIIWGDALKVDLNKLDFNKV  118 (295)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHH--------CSSEEEEESCTTTSCGGGSCCSEE
T ss_pred             CCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhcc--------CCCeEEEECchhhCCcccCCccEE
Confidence            5677899999999999999999875 4699999999999999998753        357999999999988766689999


Q ss_pred             eechhhhc
Q 018970          235 WVQWCIGH  242 (348)
Q Consensus       235 i~~~~l~~  242 (348)
                      +++..++.
T Consensus       119 v~NlPy~i  126 (295)
T 3gru_A          119 VANLPYQI  126 (295)
T ss_dssp             EEECCGGG
T ss_pred             EEeCcccc
Confidence            98866553

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.95  E-value=2e-09  Score=103.15  Aligned_cols=110  Identities=16%  Similarity=0.131  Sum_probs=86.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC---------------------------------------CcEEEEcCCHHHHHH
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDA  195 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~---------------------------------------~~v~~vD~S~~~l~~  195 (348)
                      ..++.+|||++||+|.++..++....                                       ..|+|+|+|+.|++.
T Consensus       193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~  272 (385)
T 3ldu_A          193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI  272 (385)
T ss_dssp             CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence            56778999999999999988876532                                       259999999999999


Q ss_pred             HHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhc-CC-hhhHHHHHHHHHHcCCC--CcEEEEEec
Q 018970          196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH-LT-DDDFVSFFKRAKVGLKP--GGFFVLKEN  270 (348)
Q Consensus       196 a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~-~~-~~d~~~~l~~~~~~Lkp--gG~lii~~~  270 (348)
                      |++++...++     ..+++|.+.|+.+++.+ ++||+|+++..+.. +. .+++..+++.+.+.||+  ||.+++...
T Consensus       273 Ar~Na~~~gl-----~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  345 (385)
T 3ldu_A          273 ARENAEIAGV-----DEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS  345 (385)
T ss_dssp             HHHHHHHHTC-----GGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred             HHHHHHHcCC-----CCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence            9999876543     34699999999998765 68999999887642 22 24567788888888877  887777653

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.94  E-value=2.2e-09  Score=103.14  Aligned_cols=110  Identities=13%  Similarity=0.101  Sum_probs=85.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC---------------------------------------CcEEEEcCCHHHHHH
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDA  195 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~---------------------------------------~~v~~vD~S~~~l~~  195 (348)
                      ..++..|||.+||+|.++...+....                                       ..|+++|+|+.|++.
T Consensus       199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~  278 (393)
T 3k0b_A          199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI  278 (393)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence            56678999999999999888775432                                       149999999999999


Q ss_pred             HHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhc-CC-hhhHHHHHHHHHHcCCC--CcEEEEEec
Q 018970          196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH-LT-DDDFVSFFKRAKVGLKP--GGFFVLKEN  270 (348)
Q Consensus       196 a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~-~~-~~d~~~~l~~~~~~Lkp--gG~lii~~~  270 (348)
                      |++++...|+     ..++++.+.|+.+++.+ ++||+|+++..+.. +. .+++..+++.+.+.||+  ||.+++...
T Consensus       279 Ar~Na~~~gl-----~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  351 (393)
T 3k0b_A          279 AKQNAVEAGL-----GDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS  351 (393)
T ss_dssp             HHHHHHHTTC-----TTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             HHHHHHHcCC-----CCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9999876554     34689999999998765 58999999976532 21 13566777777777776  888877653

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.94  E-value=5.2e-09  Score=100.16  Aligned_cols=110  Identities=14%  Similarity=0.090  Sum_probs=87.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC---------------------------------------CcEEEEcCCHHHHHH
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDA  195 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~---------------------------------------~~v~~vD~S~~~l~~  195 (348)
                      ..++..+||.+||+|.+++..+....                                       ..|+|+|+|+.|++.
T Consensus       192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~  271 (384)
T 3ldg_A          192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI  271 (384)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence            56778999999999999988775432                                       149999999999999


Q ss_pred             HHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhc-C-ChhhHHHHHHHHHHcCCC--CcEEEEEec
Q 018970          196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH-L-TDDDFVSFFKRAKVGLKP--GGFFVLKEN  270 (348)
Q Consensus       196 a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~-~-~~~d~~~~l~~~~~~Lkp--gG~lii~~~  270 (348)
                      |++++...|+     ...+++.+.|+.+++.+ .+||+|+++..+.. + ..+++..+++.+.+.||+  ||.+++...
T Consensus       272 Ar~Na~~~gl-----~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  344 (384)
T 3ldg_A          272 ARKNAREVGL-----EDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN  344 (384)
T ss_dssp             HHHHHHHTTC-----TTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred             HHHHHHHcCC-----CCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence            9999876554     34699999999998765 58999999876542 2 235678888888888887  888877653

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.83  E-value=6.5e-09  Score=93.98  Aligned_cols=77  Identities=13%  Similarity=0.162  Sum_probs=63.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC----CCc
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TGR  230 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~  230 (348)
                      +.++.+|||||||+|.++..++..+ .+|+++|+|+.|++.+++++..        ..++++..+|+.+++++    .++
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~~~   97 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--------QKNITIYQNDALQFDFSSVKTDKP   97 (255)
T ss_dssp             CCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--------CTTEEEEESCTTTCCGGGSCCSSC
T ss_pred             CCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--------CCCcEEEEcchHhCCHHHhccCCC
Confidence            4667899999999999999999776 4699999999999999999864        35799999999998753    246


Q ss_pred             eeEEeechhhh
Q 018970          231 YDVIWVQWCIG  241 (348)
Q Consensus       231 fD~Ii~~~~l~  241 (348)
                      || |+++...+
T Consensus        98 ~~-vv~NlPY~  107 (255)
T 3tqs_A           98 LR-VVGNLPYN  107 (255)
T ss_dssp             EE-EEEECCHH
T ss_pred             eE-EEecCCcc
Confidence            88 66665544

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.80  E-value=8.8e-09  Score=93.89  Aligned_cols=77  Identities=16%  Similarity=0.114  Sum_probs=64.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC-CceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~fD~  233 (348)
                      +.++ +|||||||+|.++..++..+. +|+++|+|+.|++.+++++..         .++++.++|+.+++.+. ..+|.
T Consensus        45 ~~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~---------~~v~vi~~D~l~~~~~~~~~~~~  113 (271)
T 3fut_A           45 PFTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG---------LPVRLVFQDALLYPWEEVPQGSL  113 (271)
T ss_dssp             CCCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT---------SSEEEEESCGGGSCGGGSCTTEE
T ss_pred             CCCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC---------CCEEEEECChhhCChhhccCccE
Confidence            4567 999999999999999998875 599999999999999998753         46899999998887543 26899


Q ss_pred             Eeechhhhc
Q 018970          234 IWVQWCIGH  242 (348)
Q Consensus       234 Ii~~~~l~~  242 (348)
                      |+++...+.
T Consensus       114 iv~NlPy~i  122 (271)
T 3fut_A          114 LVANLPYHI  122 (271)
T ss_dssp             EEEEECSSC
T ss_pred             EEecCcccc
Confidence            988876554

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.80  E-value=3e-08  Score=94.46  Aligned_cols=128  Identities=13%  Similarity=0.048  Sum_probs=85.7

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCC-------
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PET-------  228 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~-------  228 (348)
                      +.+|||+|||+|.++..++. ....|+++|+|+.+++.|++++...++      .+++|.++|+.++.  ...       
T Consensus       214 ~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~------~~v~~~~~d~~~~~~~~~~~~~~~~l  286 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHI------DNVQIIRMAAEEFTQAMNGVREFNRL  286 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTC------CSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred             CCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEECCHHHHHHHHhhccccccc
Confidence            46899999999999998875 455799999999999999998865433      36899999887642  111       


Q ss_pred             -------CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCC
Q 018970          229 -------GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGL  301 (348)
Q Consensus       229 -------~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf  301 (348)
                             .+||+|++...-..        +...+.+.|+++|.+++..-...          ..   ...+..+. + ||
T Consensus       287 ~~~~~~~~~fD~Vv~dPPr~g--------~~~~~~~~l~~~g~ivyvsc~p~----------t~---ard~~~l~-~-~y  343 (369)
T 3bt7_A          287 QGIDLKSYQCETIFVDPPRSG--------LDSETEKMVQAYPRILYISCNPE----------TL---CKNLETLS-Q-TH  343 (369)
T ss_dssp             GGSCGGGCCEEEEEECCCTTC--------CCHHHHHHHTTSSEEEEEESCHH----------HH---HHHHHHHH-H-HE
T ss_pred             cccccccCCCCEEEECcCccc--------cHHHHHHHHhCCCEEEEEECCHH----------HH---HHHHHHHh-h-Cc
Confidence                   37999997644322        23445556668887766542110          01   11233333 2 68


Q ss_pred             eEEEEeecCCCCcc
Q 018970          302 HIYKSKDQKGLPEE  315 (348)
Q Consensus       302 ~~v~~~~~~~~~~~  315 (348)
                      ++.......-||..
T Consensus       344 ~~~~~~~~D~FP~T  357 (369)
T 3bt7_A          344 KVERLALFDQFPYT  357 (369)
T ss_dssp             EEEEEEEECCSTTS
T ss_pred             EEEEEEeeccCCCC
Confidence            88877766667653

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.78  E-value=2.2e-07  Score=88.32  Aligned_cols=171  Identities=16%  Similarity=0.104  Sum_probs=102.3

Q ss_pred             hHHHHHHHHhhhcCCcc-CCCCCcEEEEeccccHHHHHHHHh--------C-------CC-cEEEEcCCHHHHHHHHHHh
Q 018970          138 SEAFLQMLLSDRFPNAR-NNQHLVALDCGSGIGRITKNLLIR--------Y-------FN-EVDLLEPVSHFLDAARESL  200 (348)
Q Consensus       138 ~~~~l~~~l~~~l~~~~-~~~~~~VLDvGcG~G~~~~~la~~--------~-------~~-~v~~vD~S~~~l~~a~~~~  200 (348)
                      ....+...+........ .....+|+|+|||+|..+..++..        .       +. .|...|...+.....=+.+
T Consensus        32 ~~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L  111 (374)
T 3b5i_A           32 MLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLL  111 (374)
T ss_dssp             HHHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHS
T ss_pred             HHHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhh
Confidence            34455555543222111 234679999999999998877321        1       22 6888887777665554444


Q ss_pred             CCCCC-C-----CcCCCcceeEEEc---CCCCCCCCCCceeEEeechhhhcCCh--------------------------
Q 018970          201 APENH-M-----APDMHKATNFFCV---PLQDFTPETGRYDVIWVQWCIGHLTD--------------------------  245 (348)
Q Consensus       201 ~~~~~-~-----~~~~~~~i~~~~~---d~~~~~~~~~~fD~Ii~~~~l~~~~~--------------------------  245 (348)
                      ....- .     ........-|..+   .+-.-.+++++||+|+++.+||++.+                          
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~  191 (374)
T 3b5i_A          112 PPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEK  191 (374)
T ss_dssp             CCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHH
T ss_pred             hhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHH
Confidence            32100 0     0000001123333   22222356789999999999999872                          


Q ss_pred             ----------hhHHHHHHHHHHcCCCCcEEEEEecccCCC--------------ce-----------------ecC-CCC
Q 018970          246 ----------DDFVSFFKRAKVGLKPGGFFVLKENIARSG--------------FV-----------------LDK-EDR  283 (348)
Q Consensus       246 ----------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~--------------~~-----------------~d~-~~~  283 (348)
                                .|+..+|+..++.|+|||.+++......+.              ..                 ++. ...
T Consensus       192 v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P  271 (374)
T 3b5i_A          192 TTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIP  271 (374)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCcc
Confidence                      166778999999999999999964332211              00                 011 112


Q ss_pred             ceecCHHHHHHHHHh-cCCeEEEEee
Q 018970          284 SITRSDFYFKELFSR-CGLHIYKSKD  308 (348)
Q Consensus       284 ~~~~s~~~l~~l~~~-aGf~~v~~~~  308 (348)
                      .+.++.+++..++++ .||++...+.
T Consensus       272 ~y~ps~~E~~~~l~~~~~F~I~~le~  297 (374)
T 3b5i_A          272 VYAPSLQDFKEVVDANGSFAIDKLVV  297 (374)
T ss_dssp             BCCCCHHHHHHHHHHHCSEEEEEEEE
T ss_pred             ccCCCHHHHHHHHHhcCCcEEEEEEE
Confidence            334699999999984 8999877553

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.77  E-value=6.5e-09  Score=93.74  Aligned_cols=106  Identities=12%  Similarity=-0.007  Sum_probs=69.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      +.++.+|||+|||+|.++..++.+ +...|.++|++-.+...        .......+.++.+...+++......+.||+
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~--------pi~~~~~g~~ii~~~~~~dv~~l~~~~~Dl  143 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEK--------PMNVQSLGWNIITFKDKTDIHRLEPVKCDT  143 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCC--------CCCCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccc--------ccccCcCCCCeEEEeccceehhcCCCCccE
Confidence            567789999999999999987755 34468889987443100        000001122455566665544555678999


Q ss_pred             EeechhhhcCCh---hh--HHHHHHHHHHcCCCC-cEEEEEe
Q 018970          234 IWVQWCIGHLTD---DD--FVSFFKRAKVGLKPG-GFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~---~d--~~~~l~~~~~~Lkpg-G~lii~~  269 (348)
                      |++..+.+ ...   +.  ...+++.+.++|+|| |.|++.-
T Consensus       144 VlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KV  184 (277)
T 3evf_A          144 LLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKV  184 (277)
T ss_dssp             EEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             EEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence            99977665 211   11  223578899999999 9999964

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.75  E-value=3.1e-08  Score=92.03  Aligned_cols=108  Identities=10%  Similarity=-0.025  Sum_probs=78.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC---C
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---G  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~--~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~  229 (348)
                      +.++.+|||+|||+|..+..++...  ...|+++|+++.+++.+++++...|+      .++.+...|+.++....   +
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~  173 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSPSDPRYH  173 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCTTCGGGT
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCChHhcCccccccC
Confidence            5677899999999999999998753  23799999999999999999876543      36889999988765332   4


Q ss_pred             ceeEEeec------hhhhcCCh---------hhH-------HHHHHHHHHcCCCCcEEEEEe
Q 018970          230 RYDVIWVQ------WCIGHLTD---------DDF-------VSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       230 ~fD~Ii~~------~~l~~~~~---------~d~-------~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +||.|++.      .++..-++         +++       ..+|+.+.++|+ ||.|+.+.
T Consensus       174 ~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT  234 (309)
T 2b9e_A          174 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST  234 (309)
T ss_dssp             TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred             CCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence            79999962      22222111         121       346888888887 99888765

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.74  E-value=1.2e-07  Score=90.15  Aligned_cols=142  Identities=15%  Similarity=0.126  Sum_probs=94.1

Q ss_pred             CCcEEEEeccccHHHHHHHHh-----------------CCC-cEEEEcCC-----------HHHHHHHHHHhCCCCCCCc
Q 018970          158 HLVALDCGSGIGRITKNLLIR-----------------YFN-EVDLLEPV-----------SHFLDAARESLAPENHMAP  208 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~-----------------~~~-~v~~vD~S-----------~~~l~~a~~~~~~~~~~~~  208 (348)
                      ..+|+|+||++|..+..++..                 .+. .|...|..           +.+.+.+++..+.      
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~------  126 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR------  126 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC------
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC------
Confidence            578999999999999887765                 111 67888877           5566555443321      


Q ss_pred             CCCcceeEEEcCCCCC---CCCCCceeEEeechhhhcCChh-------------------------------------hH
Q 018970          209 DMHKATNFFCVPLQDF---TPETGRYDVIWVQWCIGHLTDD-------------------------------------DF  248 (348)
Q Consensus       209 ~~~~~i~~~~~d~~~~---~~~~~~fD~Ii~~~~l~~~~~~-------------------------------------d~  248 (348)
                        ....-|..+....+   .++.+++|+|+++.+||++.+-                                     |+
T Consensus       127 --~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~  204 (384)
T 2efj_A          127 --KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDF  204 (384)
T ss_dssp             --CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHH
T ss_pred             --CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHH
Confidence              11234555544443   3567899999999999998641                                     22


Q ss_pred             HHHHHHHHHcCCCCcEEEEEecccCCC--c-----------------------eecCCC-CceecCHHHHHHHHHhcC-C
Q 018970          249 VSFFKRAKVGLKPGGFFVLKENIARSG--F-----------------------VLDKED-RSITRSDFYFKELFSRCG-L  301 (348)
Q Consensus       249 ~~~l~~~~~~LkpgG~lii~~~~~~~~--~-----------------------~~d~~~-~~~~~s~~~l~~l~~~aG-f  301 (348)
                      ..||+..++.|+|||.+++......+.  .                       .+|... ..+..+.+++..++++.| |
T Consensus       205 ~~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F  284 (384)
T 2efj_A          205 TTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSF  284 (384)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSE
T ss_pred             HHHHHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCc
Confidence            334777799999999999976443332  0                       011111 223369999999999985 7


Q ss_pred             eEEEEe
Q 018970          302 HIYKSK  307 (348)
Q Consensus       302 ~~v~~~  307 (348)
                      ++...+
T Consensus       285 ~i~~le  290 (384)
T 2efj_A          285 EILYLE  290 (384)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            777654

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.74  E-value=5e-09  Score=100.32  Aligned_cols=103  Identities=16%  Similarity=0.162  Sum_probs=80.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHh--CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcc-eeEEEcCCCCCCC--CCCc
Q 018970          156 NQHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCVPLQDFTP--ETGR  230 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~--~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~--~~~~  230 (348)
                      .++.+|||++||+|.++..++.+  +...|+++|+++.+++.+++++...++     ..+ +++...|+.++..  ..+.
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl-----~~~~v~v~~~Da~~~l~~~~~~~  125 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI-----PEDRYEIHGMEANFFLRKEWGFG  125 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC-----CGGGEEEECSCHHHHHHSCCSSC
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCceEEEEeCCHHHHHHHhhCCC
Confidence            35679999999999999999875  335799999999999999999876544     234 8899988765421  1357


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ||+|++.. ..     ....+++.+.+.|+|||+|+++.
T Consensus       126 fD~V~lDP-~g-----~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          126 FDYVDLDP-FG-----TPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEEEECC-SS-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcEEEECC-Cc-----CHHHHHHHHHHHhCCCCEEEEEe
Confidence            99999876 21     23468899999999999998875

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.70  E-value=5.2e-09  Score=99.94  Aligned_cols=101  Identities=14%  Similarity=0.099  Sum_probs=78.4

Q ss_pred             CCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCC---------------CCCCcCCCcceeEEEcC
Q 018970          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPE---------------NHMAPDMHKATNFFCVP  220 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~---------------~~~~~~~~~~i~~~~~d  220 (348)
                      ++.+|||+|||+|.++..++.+. ...|+++|+++.+++.+++++...               ++      .++++.+.|
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl------~~i~v~~~D  120 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE------KTIVINHDD  120 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS------SEEEEEESC
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC------CceEEEcCc
Confidence            45789999999999999999873 347999999999999999988653               22      238888988


Q ss_pred             CCCCCC-CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          221 LQDFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       221 ~~~~~~-~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +.++.. ..+.||+|++.. ..     ....+++.+.+.|||||+++++.
T Consensus       121 a~~~~~~~~~~fD~I~lDP-~~-----~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          121 ANRLMAERHRYFHFIDLDP-FG-----SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHHHHSTTCEEEEEECC-SS-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhccCCCCEEEeCC-CC-----CHHHHHHHHHHhcCCCCEEEEEe
Confidence            866431 125799999643 22     23578899999999999988864

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.67  E-value=6.3e-09  Score=94.28  Aligned_cols=81  Identities=15%  Similarity=0.123  Sum_probs=61.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCH-------HHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--C
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS-------HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P  226 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~-------~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~  226 (348)
                      .++.+|||+|||+|.++..++..+. .|+++|+|+       .+++.|+++....++     ..++++.+.|+.++.  .
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~-----~~ri~~~~~d~~~~l~~~  155 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDT-----AARINLHFGNAAEQMPAL  155 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHH-----HTTEEEEESCHHHHHHHH
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCC-----ccCeEEEECCHHHHHHhh
Confidence            4567999999999999999998765 599999999       999999876543211     234899999987742  2


Q ss_pred             CC--CceeEEeechhhhc
Q 018970          227 ET--GRYDVIWVQWCIGH  242 (348)
Q Consensus       227 ~~--~~fD~Ii~~~~l~~  242 (348)
                      ++  ++||+|++..++.+
T Consensus       156 ~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          156 VKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHCCCSEEEECCCC--
T ss_pred             hccCCCccEEEECCCCCC
Confidence            22  58999999877665

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.66  E-value=8.2e-08  Score=96.78  Aligned_cols=103  Identities=13%  Similarity=0.080  Sum_probs=75.7

Q ss_pred             CCCcEEEEeccccHHHH---HHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCce
Q 018970          157 QHLVALDCGSGIGRITK---NLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY  231 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~---~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  231 (348)
                      ....|||||||+|.+..   ..+++...  +|++||.|+ |...+++.....++     ...|+++.+|++++..+ +++
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~-----~dkVtVI~gd~eev~LP-EKV  429 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEW-----GSQVTVVSSDMREWVAP-EKA  429 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTT-----GGGEEEEESCTTTCCCS-SCE
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccC-----CCeEEEEeCcceeccCC-ccc
Confidence            34579999999999844   33334333  689999997 56677776665544     67899999999999876 789


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV  266 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li  266 (348)
                      |+||+-+.=..+-.+-....+....+.|||||.++
T Consensus       430 DIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          430 DIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             CEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            99998443222222344578888899999999876

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.66  E-value=3.9e-08  Score=88.54  Aligned_cols=75  Identities=12%  Similarity=0.143  Sum_probs=58.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC--Ccee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~fD  232 (348)
                      ..++.+|||||||+|.++..++..+..+|+++|+|+.|++.++++ .         ..++++.++|+.++++++  +.| 
T Consensus        29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~---------~~~v~~i~~D~~~~~~~~~~~~~-   97 (249)
T 3ftd_A           29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G---------DERLEVINEDASKFPFCSLGKEL-   97 (249)
T ss_dssp             CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C---------CTTEEEECSCTTTCCGGGSCSSE-
T ss_pred             CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c---------CCCeEEEEcchhhCChhHccCCc-
Confidence            456789999999999999999877545799999999999999876 2         346899999999987552  223 


Q ss_pred             EEeechhh
Q 018970          233 VIWVQWCI  240 (348)
Q Consensus       233 ~Ii~~~~l  240 (348)
                      .|+++...
T Consensus        98 ~vv~NlPy  105 (249)
T 3ftd_A           98 KVVGNLPY  105 (249)
T ss_dssp             EEEEECCT
T ss_pred             EEEEECch
Confidence            55555444

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.63  E-value=1.6e-07  Score=93.69  Aligned_cols=165  Identities=10%  Similarity=-0.034  Sum_probs=102.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-------------------CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCccee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-------------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN  215 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-------------------~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~  215 (348)
                      +.++.+|||.|||+|.++..++...                   ...++|+|+++.++..|+.++.-.+.... .....+
T Consensus       167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~-~~~~~~  245 (541)
T 2ar0_A          167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN-LDHGGA  245 (541)
T ss_dssp             CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB-GGGTBS
T ss_pred             cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc-ccccCC
Confidence            4566799999999999988776541                   12699999999999999987654433110 001267


Q ss_pred             EEEcCCCCCC-CCCCceeEEeechhhhcCCh------------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCC
Q 018970          216 FFCVPLQDFT-PETGRYDVIWVQWCIGHLTD------------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKED  282 (348)
Q Consensus       216 ~~~~d~~~~~-~~~~~fD~Ii~~~~l~~~~~------------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~  282 (348)
                      +.++|....+ ...++||+|+++..+.....            ..-..++.++.+.|||||++.+..+..   +.+..  
T Consensus       246 I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~---~L~~~--  320 (541)
T 2ar0_A          246 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN---VLFEG--  320 (541)
T ss_dssp             EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH---HHHCC--
T ss_pred             eEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc---ceecC--
Confidence            8888876533 22368999999987765432            112479999999999999988875321   11110  


Q ss_pred             CceecCHHHHHHHHHhcC-CeEEEEeecCCCCccceEEEEEEEeecCC
Q 018970          283 RSITRSDFYFKELFSRCG-LHIYKSKDQKGLPEELFAVKMYALTAEMP  329 (348)
Q Consensus       283 ~~~~~s~~~l~~l~~~aG-f~~v~~~~~~~~~~~l~~v~~~~l~~~~~  329 (348)
                          -....+++.+.+.+ +..+-.....-|...-.++.++.++..++
T Consensus       321 ----~~~~~iR~~L~~~~~l~~ii~Lp~~~F~~t~v~t~Ilvl~k~~~  364 (541)
T 2ar0_A          321 ----GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV  364 (541)
T ss_dssp             ----THHHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBCS
T ss_pred             ----cHHHHHHHHHhhcCCEEEEEEcCcCcccCCCCcEEEEEEECCCC
Confidence                01234655544433 33222222233444344666666665444

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.61  E-value=2.3e-07  Score=85.05  Aligned_cols=113  Identities=18%  Similarity=0.219  Sum_probs=81.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~  233 (348)
                      +.+.+||-||.|.|..++.+++.. ..+|+.+|+++.+++.+++.+..... +.--..+++++..|...+- ...++||+
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~-~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNA-GSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccc-cccCCCcEEEEechHHHHHhhccccCCE
Confidence            456799999999999999998653 34899999999999999988642100 0001357999999998865 33578999


Q ss_pred             EeechhhhcCChh--hHHHHHHHHHHcCCCCcEEEEEe
Q 018970          234 IWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~~--d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |++-..=..-+..  .-..+++.|.++|+|||+++...
T Consensus       161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence            9963211100000  12479999999999999999853

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.59  E-value=1.6e-07  Score=96.52  Aligned_cols=110  Identities=13%  Similarity=0.048  Sum_probs=81.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-------------------------------------------CCcEEEEcCCHH
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSH  191 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-------------------------------------------~~~v~~vD~S~~  191 (348)
                      ..++..|||.+||+|.++...+...                                           ...++|+|+++.
T Consensus       188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~  267 (703)
T 3v97_A          188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR  267 (703)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred             CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence            4567899999999999988776542                                           025999999999


Q ss_pred             HHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC--CCceeEEeechhhhc-C-ChhhHHHHHHHHHHc---CCCCcE
Q 018970          192 FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIGH-L-TDDDFVSFFKRAKVG---LKPGGF  264 (348)
Q Consensus       192 ~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~Ii~~~~l~~-~-~~~d~~~~l~~~~~~---LkpgG~  264 (348)
                      |++.|+.++...|+     ...++|.+.|+.++..+  .++||+|+++..+.. + ..+++..+++.+.+.   +.|||.
T Consensus       268 av~~A~~N~~~agv-----~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~  342 (703)
T 3v97_A          268 VIQRARTNARLAGI-----GELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWN  342 (703)
T ss_dssp             HHHHHHHHHHHTTC-----GGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred             HHHHHHHHHHHcCC-----CCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCe
Confidence            99999999877655     44689999999887533  238999999977642 2 223455555555554   458998


Q ss_pred             EEEEe
Q 018970          265 FVLKE  269 (348)
Q Consensus       265 lii~~  269 (348)
                      +++..
T Consensus       343 ~~ilt  347 (703)
T 3v97_A          343 LSLFS  347 (703)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88854

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.56  E-value=4.6e-08  Score=90.49  Aligned_cols=78  Identities=19%  Similarity=0.213  Sum_probs=63.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-----CC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----ET  228 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~~  228 (348)
                      +.++.+|||+|||+|.++..++.... ..|+++|.|+.|++.|++++...       +.++++.++|+.+++.     ..
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~-------g~~v~~v~~d~~~l~~~l~~~g~   96 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------SDRVSLFKVSYREADFLLKTLGI   96 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-------TTTEEEEECCGGGHHHHHHHTTC
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-------CCcEEEEECCHHHHHHHHHhcCC
Confidence            45778999999999999999998753 47999999999999999998653       2468999999887641     11


Q ss_pred             CceeEEeechh
Q 018970          229 GRYDVIWVQWC  239 (348)
Q Consensus       229 ~~fD~Ii~~~~  239 (348)
                      ++||.|++...
T Consensus        97 ~~~D~Vl~D~g  107 (301)
T 1m6y_A           97 EKVDGILMDLG  107 (301)
T ss_dssp             SCEEEEEEECS
T ss_pred             CCCCEEEEcCc
Confidence            47999997543

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.55  E-value=5.9e-08  Score=87.51  Aligned_cols=76  Identities=8%  Similarity=0.060  Sum_probs=58.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCc--EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC----
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET----  228 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~--v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----  228 (348)
                      +.++.+|||||||+|.++. +. ++ ..  |+++|+|+.|++.+++++..        ..++++.++|+.++++++    
T Consensus        19 ~~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~   87 (252)
T 1qyr_A           19 PQKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFL--------GPKLTIYQQDAMTFNFGELAEK   87 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTT--------GGGEEEECSCGGGCCHHHHHHH
T ss_pred             CCCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhcc--------CCceEEEECchhhCCHHHhhcc
Confidence            4567899999999999999 64 54 45  99999999999999988754        247999999998876431    


Q ss_pred             -CceeEEeechhhh
Q 018970          229 -GRYDVIWVQWCIG  241 (348)
Q Consensus       229 -~~fD~Ii~~~~l~  241 (348)
                       +..|.|+++...+
T Consensus        88 ~~~~~~vvsNlPY~  101 (252)
T 1qyr_A           88 MGQPLRVFGNLPYN  101 (252)
T ss_dssp             HTSCEEEEEECCTT
T ss_pred             cCCceEEEECCCCC
Confidence             2346777766543

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.52  E-value=1.3e-07  Score=86.57  Aligned_cols=77  Identities=10%  Similarity=0.080  Sum_probs=59.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCc---EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCC--
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG--  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~---v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~--  229 (348)
                      +.++.+|||||||+|.++..|+..+...   |+++|+|+.|++.++++. .         .+++++++|+.++++++-  
T Consensus        40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~---------~~v~~i~~D~~~~~~~~~~~  109 (279)
T 3uzu_A           40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G---------ELLELHAGDALTFDFGSIAR  109 (279)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G---------GGEEEEESCGGGCCGGGGSC
T ss_pred             CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C---------CCcEEEECChhcCChhHhcc
Confidence            4667899999999999999999775532   999999999999999884 1         468999999988875421  


Q ss_pred             ----ceeEEeechhhh
Q 018970          230 ----RYDVIWVQWCIG  241 (348)
Q Consensus       230 ----~fD~Ii~~~~l~  241 (348)
                          ..+.|+++...+
T Consensus       110 ~~~~~~~~vv~NlPY~  125 (279)
T 3uzu_A          110 PGDEPSLRIIGNLPYN  125 (279)
T ss_dssp             SSSSCCEEEEEECCHH
T ss_pred             cccCCceEEEEccCcc
Confidence                234566655544

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.50  E-value=4.7e-07  Score=85.43  Aligned_cols=146  Identities=18%  Similarity=0.111  Sum_probs=96.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHh------------C---CC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIR------------Y---FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC  218 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~------------~---~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~  218 (348)
                      ....+|+|+||++|..+..+...            +   ..  .|...|...+....+-+.+....   .  ..+.-|..
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~---~--~~~~~f~~  124 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---D--VDGVCFIN  124 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC---S--CTTCEEEE
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc---c--cCCCEEEE
Confidence            34578999999999877655443            1   22  78999999888888877665311   0  01223444


Q ss_pred             cCCCC---CCCCCCceeEEeechhhhcCCh-------------------------------hhHHHHHHHHHHcCCCCcE
Q 018970          219 VPLQD---FTPETGRYDVIWVQWCIGHLTD-------------------------------DDFVSFFKRAKVGLKPGGF  264 (348)
Q Consensus       219 ~d~~~---~~~~~~~fD~Ii~~~~l~~~~~-------------------------------~d~~~~l~~~~~~LkpgG~  264 (348)
                      +....   -.++.+++|+|+++.+||++.+                               .|+..||+..++.|+|||.
T Consensus       125 gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~  204 (359)
T 1m6e_X          125 GVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGR  204 (359)
T ss_dssp             EEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCE
T ss_pred             ecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence            43333   3466789999999999999763                               2456779999999999999


Q ss_pred             EEEEecccCCC--------cee----------------cC------CCCceecCHHHHHHHHHhcCC-eEEEE
Q 018970          265 FVLKENIARSG--------FVL----------------DK------EDRSITRSDFYFKELFSRCGL-HIYKS  306 (348)
Q Consensus       265 lii~~~~~~~~--------~~~----------------d~------~~~~~~~s~~~l~~l~~~aGf-~~v~~  306 (348)
                      +++......+.        ..+                +.      ....+.++.+++..++++.|. .+...
T Consensus       205 mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~  277 (359)
T 1m6e_X          205 MVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI  277 (359)
T ss_dssp             EEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred             EEEEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence            99964322111        001                11      111123588999999999965 65553

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.50  E-value=4.2e-08  Score=88.59  Aligned_cols=106  Identities=14%  Similarity=0.020  Sum_probs=68.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      +.++.+|||+|||+|.++..++.+ +...|.++|++..+...+..        ......++.+...+.+....+.+.+|+
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~--------~~~~g~~ii~~~~~~dv~~l~~~~~Dv  159 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM--------RTTLGWNLIRFKDKTDVFNMEVIPGDT  159 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--------CCBTTGGGEEEECSCCGGGSCCCCCSE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc--------cccCCCceEEeeCCcchhhcCCCCcCE
Confidence            567889999999999999987754 34478999998654321110        000122344444333322334578999


Q ss_pred             EeechhhhcCCh---hh--HHHHHHHHHHcCCCC--cEEEEEe
Q 018970          234 IWVQWCIGHLTD---DD--FVSFFKRAKVGLKPG--GFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~---~d--~~~~l~~~~~~Lkpg--G~lii~~  269 (348)
                      |+|-.+.. ...   +.  ...+|+-+.++|+||  |.|++.-
T Consensus       160 VLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv  201 (282)
T 3gcz_A          160 LLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV  201 (282)
T ss_dssp             EEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             EEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence            99977666 221   11  224588889999999  9999975

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.44  E-value=9e-07  Score=88.30  Aligned_cols=158  Identities=11%  Similarity=-0.068  Sum_probs=98.5

Q ss_pred             CcEEEEeccccHHHHHHHHhC----------------CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCC
Q 018970          159 LVALDCGSGIGRITKNLLIRY----------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ  222 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~----------------~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~  222 (348)
                      .+|||.+||+|.++..++...                ...++|+|+++.++..|+.++.-.|+     ..++.+.++|..
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi-----~~~i~i~~gDtL  320 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI-----DFNFGKKNADSF  320 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC-----CCBCCSSSCCTT
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC-----Ccccceeccchh
Confidence            499999999999987765321                22699999999999999987654333     122333566654


Q ss_pred             CCC-CCCCceeEEeechhhhcC-------------------------Ch--hhHHHHHHHHHHcCCCCcEEEEEecccCC
Q 018970          223 DFT-PETGRYDVIWVQWCIGHL-------------------------TD--DDFVSFFKRAKVGLKPGGFFVLKENIARS  274 (348)
Q Consensus       223 ~~~-~~~~~fD~Ii~~~~l~~~-------------------------~~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~  274 (348)
                      ..+ ....+||+|+++..+..-                         +.  ..-..+++.+.+.|+|||.+.+..+.   
T Consensus       321 ~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~---  397 (544)
T 3khk_A          321 LDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN---  397 (544)
T ss_dssp             TSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET---
T ss_pred             cCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc---
Confidence            433 334689999998776631                         11  01126899999999999998876432   


Q ss_pred             CceecCCCCceecCHHHHHHHHHhcCC-eEEEEeecCCCCccceEEEEEEEeecCC
Q 018970          275 GFVLDKEDRSITRSDFYFKELFSRCGL-HIYKSKDQKGLPEELFAVKMYALTAEMP  329 (348)
Q Consensus       275 ~~~~d~~~~~~~~s~~~l~~l~~~aGf-~~v~~~~~~~~~~~l~~v~~~~l~~~~~  329 (348)
                      ++....     ......+++.+.+.+. ..+-.....-|.....++.++.++..++
T Consensus       398 g~L~~~-----~~~~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~Ilvl~K~k~  448 (544)
T 3khk_A          398 GSMSSN-----TNNEGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDKN  448 (544)
T ss_dssp             HHHHCC-----GGGHHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESCCS
T ss_pred             hhhhcC-----cchHHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeEEEEEecCCC
Confidence            111100     0134567776666554 2222222223444445777777775444

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.44  E-value=1.3e-06  Score=75.87  Aligned_cols=100  Identities=15%  Similarity=0.038  Sum_probs=71.2

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC------------
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------------  224 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~------------  224 (348)
                      +..+|||+|||  +.+..++.....+|+.+|.++++.+.|++++...|+.   ...+++++.+|+.+.            
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~---~~~~I~~~~gda~~~~~wg~p~~~~~~  104 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPA---EGTEVNIVWTDIGPTGDWGHPVSDAKW  104 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCC---TTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCCceEEEEeCchhhhcccccccchhh
Confidence            34689999985  6777776532247999999999999999998765430   024689999986542            


Q ss_pred             ---C--------C-CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          225 ---T--------P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       225 ---~--------~-~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                         +        . ..++||+|++-.-.       ....+..+.+.|+|||+|++-
T Consensus       105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          105 RSYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             GGTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEET
T ss_pred             hhHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEEe
Confidence               1        1 23689999986531       235566677999999998543

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.39  E-value=1.3e-07  Score=95.51  Aligned_cols=103  Identities=12%  Similarity=0.053  Sum_probs=72.6

Q ss_pred             CCcEEEEeccccHHHHHH--HHh--C----------CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC
Q 018970          158 HLVALDCGSGIGRITKNL--LIR--Y----------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD  223 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~l--a~~--~----------~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~  223 (348)
                      ...|||||||+|.++...  +.+  +          ...|++||.|+.++..++.... .++     ...++++.+|+++
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~-----~d~VtVI~gd~ee  483 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW-----KRRVTIIESDMRS  483 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT-----TTCSEEEESCGGG
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC-----CCeEEEEeCchhh
Confidence            457999999999996432  211  1          1179999999977766655443 222     4569999999999


Q ss_pred             CCCC-----CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970          224 FTPE-----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV  266 (348)
Q Consensus       224 ~~~~-----~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li  266 (348)
                      +..+     .+++|+||+-+.=.....+-....|..+.+.|||||.++
T Consensus       484 v~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          484 LPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            8752     478999998655222222334567788889999999876

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.38  E-value=4.7e-07  Score=81.81  Aligned_cols=133  Identities=13%  Similarity=0.092  Sum_probs=84.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHh-------CC------CcEEEEcCCH---HHHH-----------HHHHHhCCCCCCC-
Q 018970          156 NQHLVALDCGSGIGRITKNLLIR-------YF------NEVDLLEPVS---HFLD-----------AARESLAPENHMA-  207 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~-------~~------~~v~~vD~S~---~~l~-----------~a~~~~~~~~~~~-  207 (348)
                      .+..+|||+|+|+|..+..++..       .+      .+++++|..|   +++.           .|++.+..+.... 
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            34579999999999988876543       33      2689999776   4444           4555543311000 


Q ss_pred             -------cCCCcceeEEEcCCCC-CCCCC----CceeEEeec-hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC
Q 018970          208 -------PDMHKATNFFCVPLQD-FTPET----GRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS  274 (348)
Q Consensus       208 -------~~~~~~i~~~~~d~~~-~~~~~----~~fD~Ii~~-~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~  274 (348)
                             ..-..++++..+|+.+ ++.-+    +.||+|+.- ++-...++-....+++.+.++|+|||.|+....    
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa----  214 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS----  214 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC----
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC----
Confidence                   0012467788888766 33211    279999984 222222211135799999999999999885321    


Q ss_pred             CceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          275 GFVLDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       275 ~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                                    ...+++.+.++||.+...
T Consensus       215 --------------a~~vrr~L~~aGF~v~~~  232 (257)
T 2qy6_A          215 --------------AGFVRRGLQEAGFTMQKR  232 (257)
T ss_dssp             --------------BHHHHHHHHHHTEEEEEE
T ss_pred             --------------CHHHHHHHHHCCCEEEeC
Confidence                          134788899999997654

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.38  E-value=8.8e-08  Score=92.00  Aligned_cols=74  Identities=19%  Similarity=0.167  Sum_probs=59.8

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCC--CCCCcCCCcceeEEEcCCCCC-CC-CCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQDF-TP-ETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~--~~~~~~~~~~i~~~~~d~~~~-~~-~~~~fD  232 (348)
                      ++.+|||+|||+|..+..++..+. +|+++|+|+.|++.|++++...  |+      .++++.++|+.++ +. +.++||
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl------~~i~~i~~Da~~~L~~~~~~~fD  165 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG------KDVNILTGDFKEYLPLIKTFHPD  165 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT------CEEEEEESCGGGSHHHHHHHCCS
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC------CcEEEEECcHHHhhhhccCCCce
Confidence            467999999999999998886654 6999999999999999998642  21      4699999999875 21 125799


Q ss_pred             EEeec
Q 018970          233 VIWVQ  237 (348)
Q Consensus       233 ~Ii~~  237 (348)
                      +|++.
T Consensus       166 vV~lD  170 (410)
T 3ll7_A          166 YIYVD  170 (410)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99985

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.35  E-value=4.5e-07  Score=85.71  Aligned_cols=114  Identities=11%  Similarity=0.044  Sum_probs=80.0

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCC--CCcCCCcceeEEEcCCCCCC----CCCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH--MAPDMHKATNFFCVPLQDFT----PETG  229 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~--~~~~~~~~i~~~~~d~~~~~----~~~~  229 (348)
                      .++.+||-||.|.|..++.+++.....|+.+|+++.+++.+++.+....-  .......+++++..|...+-    ...+
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            34679999999999999999976666899999999999999998764211  11111245788888875542    1235


Q ss_pred             ceeEEeechhh-------hcCCh-hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          230 RYDVIWVQWCI-------GHLTD-DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       230 ~fD~Ii~~~~l-------~~~~~-~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +||+|+.-..-       ..... .-...+++.+.++|+|||+++...
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            79999974211       11111 123678999999999999998754

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.34  E-value=1.1e-07  Score=85.95  Aligned_cols=104  Identities=15%  Similarity=0.086  Sum_probs=67.8

Q ss_pred             CCC--CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCC--CCCcC-CCcceeEEEcCCCCC-CCCCC
Q 018970          156 NQH--LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN--HMAPD-MHKATNFFCVPLQDF-TPETG  229 (348)
Q Consensus       156 ~~~--~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~--~~~~~-~~~~i~~~~~d~~~~-~~~~~  229 (348)
                      .++  .+|||+|||+|..+..++..+. .|+++|.++.+.+.+++++....  ..... ...++++.++|..++ +...+
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~  163 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP  163 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSS
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcc
Confidence            445  7999999999999999998877 49999999988666665542110  00000 124689999998763 22224


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCc
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG  263 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG  263 (348)
                      +||+|++...+.+-. +  ..++++..++|++.+
T Consensus       164 ~fDvV~lDP~y~~~~-~--saavkk~~~~lr~l~  194 (258)
T 2oyr_A          164 RPQVVYLDPMFPHKQ-K--SALVKKEMRVFQSLV  194 (258)
T ss_dssp             CCSEEEECCCCCCCC-C-------HHHHHHHHHS
T ss_pred             cCCEEEEcCCCCCcc-c--chHHHHHHHHHHHhh
Confidence            799999988886632 1  245566666666643

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.33  E-value=7.3e-07  Score=80.99  Aligned_cols=106  Identities=12%  Similarity=-0.048  Sum_probs=66.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+|||+||++|.++..++++ +...|+++|++..+.....        .......++.....+.+-.....+.+|+
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~--------~~~~~~~~iv~~~~~~di~~l~~~~~Dl  150 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPI--------HMQTLGWNIVKFKDKSNVFTMPTEPSDT  150 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCC--------CCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccc--------cccccCCceEEeecCceeeecCCCCcCE
Confidence            467889999999999999998864 3447899998754311000        0000012233333333322334568999


Q ss_pred             EeechhhhcCCh---hh--HHHHHHHHHHcCCCC-cEEEEEe
Q 018970          234 IWVQWCIGHLTD---DD--FVSFFKRAKVGLKPG-GFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~---~d--~~~~l~~~~~~Lkpg-G~lii~~  269 (348)
                      |++..+.+ ...   +.  ...+++-+.++|+|| |.|++.-
T Consensus       151 VlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~Kv  191 (300)
T 3eld_A          151 LLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKV  191 (300)
T ss_dssp             EEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred             EeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence            99966655 221   11  234588889999999 9999974

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.31  E-value=1.5e-05  Score=79.47  Aligned_cols=157  Identities=11%  Similarity=0.011  Sum_probs=101.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC----CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--C-CCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--T-PET  228 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~----~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~-~~~  228 (348)
                      .++.+|||.+||+|.++..++...    ...++|+|+++.++..|+.++.-.|..    ..++.+.++|....  + ...
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~----~~~~~I~~gDtL~~d~p~~~~  295 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP----IENQFLHNADTLDEDWPTQEP  295 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEESCTTTSCSCCSSC
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC----cCccceEecceeccccccccc
Confidence            456799999999999998887663    237999999999999999876433321    13577888887654  3 234


Q ss_pred             CceeEEeechhhhcCC-------------------h---hhHHHHHHHHHHcCC-CCcEEEEEecccCCCceecCCCCce
Q 018970          229 GRYDVIWVQWCIGHLT-------------------D---DDFVSFFKRAKVGLK-PGGFFVLKENIARSGFVLDKEDRSI  285 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~~-------------------~---~d~~~~l~~~~~~Lk-pgG~lii~~~~~~~~~~~d~~~~~~  285 (348)
                      ..||+|+++..+..-.                   .   .+ ..++..+.+.|+ |||++.+..+..   +.+..     
T Consensus       296 ~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~VlP~g---~Lf~~-----  366 (542)
T 3lkd_A          296 TNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVLPHG---VLFRG-----  366 (542)
T ss_dssp             CCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEEETH---HHHCC-----
T ss_pred             ccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEecch---HhhCC-----
Confidence            7899999986654210                   0   11 258999999999 999988765321   11100     


Q ss_pred             ecCHHHHHHHHHhcCC-eEEEEeecCCCCccceEEEEEEEee
Q 018970          286 TRSDFYFKELFSRCGL-HIYKSKDQKGLPEELFAVKMYALTA  326 (348)
Q Consensus       286 ~~s~~~l~~l~~~aGf-~~v~~~~~~~~~~~l~~v~~~~l~~  326 (348)
                       -....+++.+.+.+. ..+-.....-|.....+..++.+..
T Consensus       367 -~~~~~iRk~Lle~~~l~~II~LP~~lF~~t~i~t~Ilvl~K  407 (542)
T 3lkd_A          367 -NAEGTIRKALLEEGAIDTVIGLPANIFFNTSIPTTVIILKK  407 (542)
T ss_dssp             -THHHHHHHHHHHTTCEEEEEECCSSCSSSCCCCEEEEEECS
T ss_pred             -chhHHHHHHHHhCCceeEEEEccccccCCCCCcEEEEEEec
Confidence             013457776665554 3333222333444445666666653

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.24  E-value=4.1e-06  Score=85.88  Aligned_cols=113  Identities=12%  Similarity=0.070  Sum_probs=76.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC----CcEEEEcCCHHHHHHH--HHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAA--RESLAPENHMAPDMHKATNFFCVPLQDFT-PET  228 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~----~~v~~vD~S~~~l~~a--~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~  228 (348)
                      .++.+|||.|||+|.++..++....    ..++|+|+++.+++.|  +.++...++. .. .....+...|+.+.. ...
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Ll-hG-i~~~~I~~dD~L~~~~~~~  397 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLV-SS-NNAPTITGEDVCSLNPEDF  397 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTC-BT-TBCCEEECCCGGGCCGGGG
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhh-cC-CCcceEEecchhccccccc
Confidence            4567999999999999999887653    2799999999999999  5544321110 00 012345555555432 123


Q ss_pred             CceeEEeechhhhc-CCh-h-------------------------hHHHHHHHHHHcCCCCcEEEEEec
Q 018970          229 GRYDVIWVQWCIGH-LTD-D-------------------------DFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~-~~~-~-------------------------d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +.||+|+++..+.. ... .                         -...+++.+.+.|+|||.+.+..+
T Consensus       398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP  466 (878)
T 3s1s_A          398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP  466 (878)
T ss_dssp             TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence            68999999877732 110 0                         134578999999999999988753

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.13  E-value=2.3e-05  Score=73.74  Aligned_cols=146  Identities=10%  Similarity=0.016  Sum_probs=87.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||+||++|.++..+++++. .|++||+.+ |-....    .        ..++++...|...+.++.+.||+|
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~-l~~~l~----~--------~~~V~~~~~d~~~~~~~~~~~D~v  274 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP-MAQSLM----D--------TGQVTWLREDGFKFRPTRSNISWM  274 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC-CCHHHH----T--------TTCEEEECSCTTTCCCCSSCEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh-cChhhc----c--------CCCeEEEeCccccccCCCCCcCEE
Confidence            56889999999999999999998876 599999764 222111    1        356899999999988776789999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCc
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPE  314 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~  314 (348)
                      +|-.+...   ......+......+..++.++.........+      .........+.+.|...||...-...+-... 
T Consensus       275 vsDm~~~p---~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~------~~l~~~~~~i~~~l~~~g~~~~l~akhL~hd-  344 (375)
T 4auk_A          275 VCDMVEKP---AKVAALMAQWLVNGWCRETIFNLKLPMKKRY------EEVSHNLAYIQAQLDEHGINAQIQARQLYHD-  344 (375)
T ss_dssp             EECCSSCH---HHHHHHHHHHHHTTSCSEEEEEEECCSSSHH------HHHHHHHHHHHHHHHHTTCCEEEEEECCTTC-
T ss_pred             EEcCCCCh---HHhHHHHHHHHhccccceEEEEEEecccchH------HHHHHHHHHHHHHHHhcCcchhheehhhccC-
Confidence            99766432   2233344444444444454443332111100      0111233457788899999743322222211 


Q ss_pred             cceEEEEEEEe
Q 018970          315 ELFAVKMYALT  325 (348)
Q Consensus       315 ~l~~v~~~~l~  325 (348)
                       -.-+.+++-+
T Consensus       345 -ReEiTV~~rk  354 (375)
T 4auk_A          345 -REEVTVHVRR  354 (375)
T ss_dssp             -SSEEEEEEEE
T ss_pred             -CcEEEEEEEe
Confidence             2245566554

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.09  E-value=6.7e-06  Score=77.65  Aligned_cols=115  Identities=15%  Similarity=0.071  Sum_probs=83.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD  232 (348)
                      +.++.+|||+.||.|.=+.++++.+.. .|+++|+|+.-+...++++...+........++.+...|...+. ...+.||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            678899999999999999999876554 79999999999999988876544333333456788888877654 2346899


Q ss_pred             EEee----ch----hhhc-------CChhh-------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWV----QW----CIGH-------LTDDD-------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~----~~----~l~~-------~~~~d-------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .|++    +.    ++..       ...++       ...+|.++.++|||||.|+.++
T Consensus       226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT  284 (359)
T 4fzv_A          226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST  284 (359)
T ss_dssp             EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence            9995    22    1111       11111       2467889999999999998875

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.09  E-value=3.9e-06  Score=68.40  Aligned_cols=85  Identities=11%  Similarity=0.040  Sum_probs=60.9

Q ss_pred             CCCCcEEEEecccc-HHHHHHHH-hCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC-Ccee
Q 018970          156 NQHLVALDCGSGIG-RITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G-~~~~~la~-~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~fD  232 (348)
                      .++.+|||||||.| ..+..|++ .+++ |+++|+++..++                     +.+.|+.+..... ..||
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g~~-V~atDInp~Av~---------------------~v~dDiF~P~~~~Y~~~D   91 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSKVD-LVLTDIKPSHGG---------------------IVRDDITSPRMEIYRGAA   91 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSCCE-EEEECSSCSSTT---------------------EECCCSSSCCHHHHTTEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCCCe-EEEEECCccccc---------------------eEEccCCCCcccccCCcC
Confidence            35679999999999 69999987 5664 999999875442                     6778887643221 3799


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++...-     .++...+.++++.  -|.-++|..
T Consensus        92 LIYsirPP-----~El~~~i~~lA~~--v~adliI~p  121 (153)
T 2k4m_A           92 LIYSIRPP-----AEIHSSLMRVADA--VGARLIIKP  121 (153)
T ss_dssp             EEEEESCC-----TTTHHHHHHHHHH--HTCEEEEEC
T ss_pred             EEEEcCCC-----HHHHHHHHHHHHH--cCCCEEEEc
Confidence            99875543     2566777777664  356677764

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.04  E-value=1.9e-05  Score=71.52  Aligned_cols=177  Identities=15%  Similarity=0.112  Sum_probs=92.3

Q ss_pred             cCCCCCCCcccCHHHHHHHhhcCCccchhhhhhHHHhh-hhcccccc-ccccccccCccccccc-ChhhhHHHHHHHHhh
Q 018970           72 SGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREG-ISYWEGVE-ASVDGVLGGFGNVNEV-DIKGSEAFLQMLLSD  148 (348)
Q Consensus        72 ~~~~~~g~~~~~~~~~w~~~l~~~~~~~~~~~~~y~~~-~~yW~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~  148 (348)
                      .|...-|..-.++.++|++.|..     +.+..|+.-- ...++-.. ...+..-.+  ..... .......-|..+...
T Consensus        17 ~~~~rg~~~g~tlG~~wK~~LN~-----l~k~~F~~Yk~~gi~Evdr~~ar~~l~~g--~~~~g~y~SR~~~KL~ei~~~   89 (321)
T 3lkz_A           17 RGSHMGGAKGRTLGEVWKERLNQ-----MTKEEFTRYRKEAIIEVDRSAAKHARKEG--NVTGGHPVSRGTAKLRWLVER   89 (321)
T ss_dssp             ---------CCSHHHHHHHHHTT-----SCHHHHHHHTTTTCEEECCHHHHHHHHHT--CCSSCCCSSTHHHHHHHHHHT
T ss_pred             ccCcCCCCCCCchHHHHHHHHhc-----cCHHHHHHHhhcCceeechHHHHHHHhcC--cCcCCCccchHHHHHHHHHHh
Confidence            34444455567799999999886     3444554321 22222110 000000001  00000 112222334444433


Q ss_pred             hcCCccCCCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCCCCC
Q 018970          149 RFPNARNNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTP  226 (348)
Q Consensus       149 ~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~  226 (348)
                      .    .+.++.+|||+||++|.++.+.+.. +...|.++|+...--+.- ..+...+      ...+.+... |+..++.
T Consensus        90 ~----~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~------w~lV~~~~~~Dv~~l~~  158 (321)
T 3lkz_A           90 R----FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYG------WNIVTMKSGVDVFYRPS  158 (321)
T ss_dssp             T----SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTT------GGGEEEECSCCTTSSCC
T ss_pred             c----CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcC------CcceEEEeccCHhhCCC
Confidence            2    2578889999999999999976654 444899999764411000 0000000      133667766 8777664


Q ss_pred             CCCceeEEeechhhhcCChh-----hHHHHHHHHHHcCCCC-cEEEEEe
Q 018970          227 ETGRYDVIWVQWCIGHLTDD-----DFVSFFKRAKVGLKPG-GFFVLKE  269 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~-----d~~~~l~~~~~~Lkpg-G~lii~~  269 (348)
                        ..+|+|+|-.. .--+..     ....+|+-+.++|++| |-|+|.-
T Consensus       159 --~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KV  204 (321)
T 3lkz_A          159 --ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKV  204 (321)
T ss_dssp             --CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             --CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEE
Confidence              56999998544 322211     1234778888999999 9988854

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.00  E-value=9.6e-06  Score=74.02  Aligned_cols=128  Identities=9%  Similarity=0.029  Sum_probs=86.9

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC------CCcEEEEcCCH--------------------------HHHHHHHHHhCCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVS--------------------------HFLDAARESLAPE  203 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~------~~~v~~vD~S~--------------------------~~l~~a~~~~~~~  203 (348)
                      ..+..|||||+..|..+..++...      ...|+++|...                          ..++.+++++...
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            455799999999999988876431      23699999542                          1467788888765


Q ss_pred             CCCCcCCCcceeEEEcCCCC-CC-CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCC
Q 018970          204 NHMAPDMHKATNFFCVPLQD-FT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKE  281 (348)
Q Consensus       204 ~~~~~~~~~~i~~~~~d~~~-~~-~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~  281 (348)
                      |+.    ..+++++.+|+.+ ++ .+.++||+|++-.-..    +....+|+.+...|+|||++++-+...         
T Consensus       185 gl~----~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD~~~---------  247 (282)
T 2wk1_A          185 DLL----DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDDYMM---------  247 (282)
T ss_dssp             TCC----STTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESSCTT---------
T ss_pred             CCC----cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcCCCC---------
Confidence            441    2579999998765 33 2246899999754321    135678999999999999887765310         


Q ss_pred             CCceecCHHHHHHHHHhcCCeE
Q 018970          282 DRSITRSDFYFKELFSRCGLHI  303 (348)
Q Consensus       282 ~~~~~~s~~~l~~l~~~aGf~~  303 (348)
                         ..-...-+.+.+++.|+.+
T Consensus       248 ---~~G~~~Av~Ef~~~~~i~~  266 (282)
T 2wk1_A          248 ---CPPCKDAVDEYRAKFDIAD  266 (282)
T ss_dssp             ---CHHHHHHHHHHHHHTTCCS
T ss_pred             ---CHHHHHHHHHHHHhcCCce
Confidence               0011345677777777653

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.97  E-value=1e-05  Score=71.95  Aligned_cols=104  Identities=12%  Similarity=-0.043  Sum_probs=61.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcc-eeEEEc-CCCCCCCCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCV-PLQDFTPETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~-i~~~~~-d~~~~~~~~~~f  231 (348)
                      ++++.+|||+||++|.++...+... ...|.|.++.... .       .........+.+ +.|..+ |+.++.  ...+
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-------~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~  140 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-------EEPMLMQSYGWNIVTMKSGVDVFYKP--SEIS  140 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-------CCCCCCCSTTGGGEEEECSCCGGGSC--CCCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-------cCCCcccCCCceEEEeeccCCccCCC--CCCC
Confidence            6889999999999999999877541 2234555543220 0       000000000111 344445 887754  3579


Q ss_pred             eEEeechhhhcCCh--hh---HHHHHHHHHHcCCCCc-EEEEEe
Q 018970          232 DVIWVQWCIGHLTD--DD---FVSFFKRAKVGLKPGG-FFVLKE  269 (348)
Q Consensus       232 D~Ii~~~~l~~~~~--~d---~~~~l~~~~~~LkpgG-~lii~~  269 (348)
                      |+|+|-.+-. ...  -|   ...+|.-+.++|+||| .|++.-
T Consensus       141 DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKV  183 (269)
T 2px2_A          141 DTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKI  183 (269)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEE
Confidence            9999854332 111  11   2236777889999999 888865

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.80  E-value=1.9e-06  Score=99.54  Aligned_cols=141  Identities=17%  Similarity=0.180  Sum_probs=70.5

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CCCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPET  228 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~------~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~  228 (348)
                      .+..+|||||+|+|..+..++...      +.+++..|+|+...+.|++++..         ..++....|..+. .+..
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~---------~di~~~~~d~~~~~~~~~ 1309 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ---------LHVTQGQWDPANPAPGSL 1309 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH---------HTEEEECCCSSCCCC---
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh---------cccccccccccccccCCC
Confidence            456799999999998877665542      22799999999888888776532         1122222233221 1134


Q ss_pred             CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-----eecCCC--CceecCHHHHHHHHHhcCC
Q 018970          229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-----VLDKED--RSITRSDFYFKELFSRCGL  301 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-----~~d~~~--~~~~~s~~~l~~l~~~aGf  301 (348)
                      .+||+|++.+++|..+  ++...++++.++|||||++++.+......+     .+....  .....+.+.|.++|..+||
T Consensus      1310 ~~ydlvia~~vl~~t~--~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A         1310 GKADLLVCNCALATLG--DPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp             --CCEEEEECC----------------------CCEEEEEEC--------------------------CTTTTSSTTTTE
T ss_pred             CceeEEEEcccccccc--cHHHHHHHHHHhcCCCcEEEEEeccccccccccccccccccccCCcccCHHHHHHHHHhCCC
Confidence            6799999999998766  778899999999999999998764321000     011000  0112456678888999999


Q ss_pred             eEEEEe
Q 018970          302 HIYKSK  307 (348)
Q Consensus       302 ~~v~~~  307 (348)
                      ..+...
T Consensus      1388 ~~~~~~ 1393 (2512)
T 2vz8_A         1388 HLVALK 1393 (2512)
T ss_dssp             EEEEEE
T ss_pred             ceeeec
Confidence            987654

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.79  E-value=4.2e-05  Score=69.31  Aligned_cols=73  Identities=16%  Similarity=0.060  Sum_probs=59.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~  229 (348)
                      +.++..+||++||.|..+..++++. ..|+|+|.++.+++.|++ +..         .++.++..++.++.     ...+
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~---------~rv~lv~~~f~~l~~~L~~~g~~   88 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL---------PGLTVVQGNFRHLKRHLAALGVE   88 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC---------TTEEEEESCGGGHHHHHHHTTCS
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc---------CCEEEEECCcchHHHHHHHcCCC
Confidence            5677899999999999999999873 379999999999999998 643         36889998887764     1225


Q ss_pred             ceeEEeech
Q 018970          230 RYDVIWVQW  238 (348)
Q Consensus       230 ~fD~Ii~~~  238 (348)
                      ++|.|++..
T Consensus        89 ~vDgIL~DL   97 (285)
T 1wg8_A           89 RVDGILADL   97 (285)
T ss_dssp             CEEEEEEEC
T ss_pred             CcCEEEeCC
Confidence            799998643

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.77  E-value=8.8e-05  Score=65.06  Aligned_cols=105  Identities=12%  Similarity=0.039  Sum_probs=68.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+||++|.++.+.+.. +...|.++|+-..--+. ...+...|      ...++|... |+..++.  .++|
T Consensus        76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~g------wn~v~fk~gvDv~~~~~--~~~D  146 (267)
T 3p8z_A           76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYG------WNIVKLMSGKDVFYLPP--EKCD  146 (267)
T ss_dssp             SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTT------TTSEEEECSCCGGGCCC--CCCS
T ss_pred             CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcC------cCceEEEeccceeecCC--cccc
Confidence            578889999999999999977654 44489999975432210 00011111      145888888 8766554  5699


Q ss_pred             EEeechhhhcCCh----hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTD----DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~----~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|+|-..-..-..    .....+|+-+.++|++ |-|+|.-
T Consensus       147 tllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KV  186 (267)
T 3p8z_A          147 TLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKV  186 (267)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEE
T ss_pred             EEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEE
Confidence            9998544322221    1123478888999999 7888854

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.58  E-value=0.00083  Score=63.76  Aligned_cols=148  Identities=16%  Similarity=0.067  Sum_probs=96.7

Q ss_pred             CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--------CCCc
Q 018970          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------ETGR  230 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~  230 (348)
                      .+++|+-||.|.++..+...++..|.++|+++.+++..+.++..           ..+++.|+.++..        ..+.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~-----------~~~~~~DI~~~~~~~~~~~~~~~~~   71 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPR-----------SLHVQEDVSLLNAEIIKGFFKNDMP   71 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTT-----------SEEECCCGGGCCHHHHHHHHCSCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCC-----------CceEecChhhcCHHHHHhhcccCCC
Confidence            47999999999999999988988889999999999999888643           4567778877642        2357


Q ss_pred             eeEEeechhhhcCC------hhh-HHHH---HHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcC
Q 018970          231 YDVIWVQWCIGHLT------DDD-FVSF---FKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCG  300 (348)
Q Consensus       231 fD~Ii~~~~l~~~~------~~d-~~~~---l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aG  300 (348)
                      +|+|+.......+.      .+| ...+   +-++...++|  .+++.||+..--.      .......+.+. .|++.|
T Consensus        72 ~D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~gl~s------~~~~~~~~~i~-~l~~~G  142 (376)
T 3g7u_A           72 IDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVPGIMQ------EKYSGIRNKAF-NLVSGD  142 (376)
T ss_dssp             CCEEEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECTTTTC------GGGHHHHHHHH-HHHHTT
T ss_pred             eeEEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecchHhhc------cCcHHHHHHHH-HHHcCC
Confidence            99999755433332      011 1122   2334445677  5667777643110      00011234566 889999


Q ss_pred             CeE-EE---EeecCCCCccceEEEEEEEee
Q 018970          301 LHI-YK---SKDQKGLPEELFAVKMYALTA  326 (348)
Q Consensus       301 f~~-v~---~~~~~~~~~~l~~v~~~~l~~  326 (348)
                      |.+ ..   .....+.|..--.+.+.+.+.
T Consensus       143 Y~v~~~~vl~a~dyGvPQ~R~R~~iig~r~  172 (376)
T 3g7u_A          143 YDILDPIKVKASDYGAPTIRTRYFFIGVKK  172 (376)
T ss_dssp             EEECCCEEEEGGGGTCSBCCEEEEEEEEEG
T ss_pred             CccCcEEEEEHhhCCCCCCCcEEEEEEEeC
Confidence            998 22   233456787766777766653

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.51  E-value=0.0004  Score=69.01  Aligned_cols=109  Identities=17%  Similarity=0.037  Sum_probs=73.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY--------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP  220 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~--------------~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d  220 (348)
                      +.++.+|+|-+||+|.+........              ...++|+|+++.+...|+-++--.|.      ...++...|
T Consensus       215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~------~~~~I~~~d  288 (530)
T 3ufb_A          215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL------EYPRIDPEN  288 (530)
T ss_dssp             CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC------SCCEEECSC
T ss_pred             cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC------ccccccccc
Confidence            4667799999999999987665421              12599999999999999866432222      223456666


Q ss_pred             CCCCCC----CCCceeEEeechhhhcCCh--------------hhHHHHHHHHHHcCC-------CCcEEEEEe
Q 018970          221 LQDFTP----ETGRYDVIWVQWCIGHLTD--------------DDFVSFFKRAKVGLK-------PGGFFVLKE  269 (348)
Q Consensus       221 ~~~~~~----~~~~fD~Ii~~~~l~~~~~--------------~d~~~~l~~~~~~Lk-------pgG~lii~~  269 (348)
                      ....+.    ....||+|+++..+..-.+              +.-..++..+.+.||       |||++.+.-
T Consensus       289 tL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl  362 (530)
T 3ufb_A          289 SLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV  362 (530)
T ss_dssp             TTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred             cccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence            554431    1247999999988752211              112357888888887       799988865

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.33  E-value=0.00062  Score=63.83  Aligned_cols=145  Identities=17%  Similarity=0.197  Sum_probs=93.2

Q ss_pred             CcEEEEeccccHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC---CCceeE
Q 018970          159 LVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYDV  233 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~--~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~  233 (348)
                      .+|+|+-||.|.++..+...+  +..|.++|+++.+++..+.++..           ..+.+.|+.++...   ...+|+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----------~~~~~~Di~~~~~~~~~~~~~D~   71 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----------TQLLAKTIEGITLEEFDRLSFDM   71 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------SCEECSCGGGCCHHHHHHHCCSE
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----------cccccCCHHHccHhHcCcCCcCE
Confidence            579999999999999998888  44799999999999999999754           34667788776421   125899


Q ss_pred             EeechhhhcCCh-------hh-HHHHHH---HHHHcCC--CCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcC
Q 018970          234 IWVQWCIGHLTD-------DD-FVSFFK---RAKVGLK--PGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCG  300 (348)
Q Consensus       234 Ii~~~~l~~~~~-------~d-~~~~l~---~~~~~Lk--pgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aG  300 (348)
                      |+.......+..       +| ...++.   ++...++  |.  +++.||+..-.   .      ..+...+.+.|++.|
T Consensus        72 l~~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~l~---~------~~~~~~i~~~l~~~G  140 (343)
T 1g55_A           72 ILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFE---V------SSTRDLLIQTIENCG  140 (343)
T ss_dssp             EEECCC------------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGG---G------SHHHHHHHHHHHHTT
T ss_pred             EEEcCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCC--EEEEeCCcccc---C------HHHHHHHHHHHHHCC
Confidence            998655332221       11 111333   3444455  63  55557664310   0      123456888899999


Q ss_pred             CeEEEEee---cCCCCccceEEEEEEEe
Q 018970          301 LHIYKSKD---QKGLPEELFAVKMYALT  325 (348)
Q Consensus       301 f~~v~~~~---~~~~~~~l~~v~~~~l~  325 (348)
                      |.+.....   ..+.|..--.+.+.+.+
T Consensus       141 Y~v~~~vl~a~~~GvPQ~R~R~~iv~~~  168 (343)
T 1g55_A          141 FQYQEFLLSPTSLGIPNSRLRYFLIAKL  168 (343)
T ss_dssp             EEEEEEEECGGGGTCSCCCCEEEEEEEE
T ss_pred             CeeEEEEEEHHHCCCCCcccEEEEEEEe
Confidence            99776433   34577776666666655

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.09  E-value=0.00072  Score=61.96  Aligned_cols=46  Identities=22%  Similarity=0.036  Sum_probs=40.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~  202 (348)
                      .++..|||++||+|..+..++..+. .++|+|+++.+++.|++++..
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHH
Confidence            4677999999999999998876665 599999999999999988753

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.08  E-value=0.0044  Score=57.59  Aligned_cols=148  Identities=13%  Similarity=0.040  Sum_probs=95.5

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEee
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV  236 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii~  236 (348)
                      +.+++|+-||.|.++..+...++..|.++|+++.+++..+.++...        .     ..|+.++... -..+|+|+.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~--------~-----~~Di~~~~~~~~~~~D~l~~   77 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------P-----EGDITQVNEKTIPDHDILCA   77 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------C-----BSCGGGSCGGGSCCCSEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC--------C-----cCCHHHcCHhhCCCCCEEEE
Confidence            3689999999999999999888888999999999999999998642        1     3566554421 135899997


Q ss_pred             chhhhcCC---------hh--hHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          237 QWCIGHLT---------DD--DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       237 ~~~l~~~~---------~~--d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      ......+.         |+  .+-.-+-++.+.++|  .+++.||+..-.   .   ......-+.+.+.|++.||.+..
T Consensus        78 gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P--~~~~~ENV~gl~---~---~~~~~~~~~i~~~l~~~GY~v~~  149 (327)
T 2c7p_A           78 GFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKP--KVVFMENVKNFA---S---HDNGNTLEVVKNTMNELDYSFHA  149 (327)
T ss_dssp             ECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCC--SEEEEEEEGGGG---T---GGGGHHHHHHHHHHHHTTBCCEE
T ss_pred             CCCCCCcchhcccCCCcchhhHHHHHHHHHHHhccC--cEEEEeCcHHHH---h---ccccHHHHHHHHHHHhCCCEEEE
Confidence            54333321         11  122223334455688  466777764311   0   00012345688889999998766


Q ss_pred             Ee---ecCCCCccceEEEEEEEee
Q 018970          306 SK---DQKGLPEELFAVKMYALTA  326 (348)
Q Consensus       306 ~~---~~~~~~~~l~~v~~~~l~~  326 (348)
                      ..   ...+.|..--.+.+.+.+.
T Consensus       150 ~vl~a~~~GvPQ~R~R~~iv~~~~  173 (327)
T 2c7p_A          150 KVLNALDYGIPQKRERIYMICFRN  173 (327)
T ss_dssp             EEEEGGGGTCSBCCEEEEEEEEBG
T ss_pred             EEEEHHHcCCCccceEEEEEEEeC
Confidence            43   2446777766666666653

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.86  E-value=0.0062  Score=56.15  Aligned_cols=142  Identities=10%  Similarity=-0.021  Sum_probs=93.6

Q ss_pred             CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---------CCCC
Q 018970          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------PETG  229 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~~  229 (348)
                      ..||++|||-=.....+.......|+-+| -|..++..++.+.+.+..   ...+..++.+|+.+ .         +..+
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~---~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVT---PTADRREVPIDLRQ-DWPPALRSAGFDPS  178 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCC---CSSEEEEEECCTTS-CHHHHHHHTTCCTT
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCC---CCCCeEEEecchHh-hHHHHHHhccCCCC
Confidence            46999999975554444311112577888 589999888887532211   13467788889876 3         1112


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce-----------ecCCC-------Ccee--cC-
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV-----------LDKED-------RSIT--RS-  288 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~-----------~d~~~-------~~~~--~s-  288 (348)
                      .-=++++-.+++|+++++...+++.+...+.||+.+++........+.           +....       ..+.  .+ 
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  258 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDEN  258 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTT
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCCCC
Confidence            345788899999999988999999999999999998886533221110           11111       1222  25 


Q ss_pred             HHHHHHHHHhcCCeEEE
Q 018970          289 DFYFKELFSRCGLHIYK  305 (348)
Q Consensus       289 ~~~l~~l~~~aGf~~v~  305 (348)
                      .+++.+.|.+.||+.+.
T Consensus       259 ~~~~~~~f~~~G~~~~~  275 (310)
T 2uyo_A          259 RAVVADWLNRHGWRATA  275 (310)
T ss_dssp             CCCHHHHHTTTTEEEEE
T ss_pred             hHHHHHHHHHCcCcccc
Confidence            67899999999999883

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.81  E-value=0.0081  Score=55.78  Aligned_cols=148  Identities=10%  Similarity=-0.032  Sum_probs=95.9

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC--CcE-EEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC---CCc
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF--NEV-DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGR  230 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~--~~v-~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~  230 (348)
                      ...+++|+-||.|.++..+...++  ..| .++|+++.+++.-+.++...            +...|+.++...   ...
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------------~~~~DI~~~~~~~i~~~~   76 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------------VQVKNLDSISIKQIESLN   76 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------------CBCCCTTTCCHHHHHHTC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------------cccCChhhcCHHHhccCC
Confidence            456899999999999999987775  556 79999999999999988641            345677776521   126


Q ss_pred             eeEEeechhhhcC---------C-hhhHHHHHHHHHH-cCCC---CcEEEEEecccCCCceecCCCCceecCHHHHHHHH
Q 018970          231 YDVIWVQWCIGHL---------T-DDDFVSFFKRAKV-GLKP---GGFFVLKENIARSGFVLDKEDRSITRSDFYFKELF  296 (348)
Q Consensus       231 fD~Ii~~~~l~~~---------~-~~d~~~~l~~~~~-~Lkp---gG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~  296 (348)
                      +|+++.......+         . ++....++.++.+ +++.   .-.+++.||+..-..         ....+.+.+.|
T Consensus        77 ~Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~---------~~~~~~i~~~l  147 (327)
T 3qv2_A           77 CNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKE---------SLVFKEIYNIL  147 (327)
T ss_dssp             CCEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGG---------SHHHHHHHHHH
T ss_pred             CCEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcC---------hHHHHHHHHHH
Confidence            8999975543333         0 1122234555555 4432   136777787753110         12346788889


Q ss_pred             HhcCCeEEEEee---cCCCCccceEEEEEEEe
Q 018970          297 SRCGLHIYKSKD---QKGLPEELFAVKMYALT  325 (348)
Q Consensus       297 ~~aGf~~v~~~~---~~~~~~~l~~v~~~~l~  325 (348)
                      ++.||.+.....   ..+.|..--.+.+.+.+
T Consensus       148 ~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r  179 (327)
T 3qv2_A          148 IKNQYYIKDIICSPIDIGIPNSRTRYYVMARL  179 (327)
T ss_dssp             HHTTCEEEEEEECGGGGTCSBCCCEEEEEEES
T ss_pred             HhCCCEEEEEEEeHHHcCCCccceEEEEEEEe
Confidence            999999776443   34567665555555553

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.80  E-value=0.0051  Score=57.31  Aligned_cols=144  Identities=10%  Similarity=0.079  Sum_probs=95.0

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCC---------Cc------CCCcceeEEEcC
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHM---------AP------DMHKATNFFCVP  220 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~---------~~------~~~~~i~~~~~d  220 (348)
                      +...|+.+|||.......+...+.. .+.=+|. |.+++.-++.+.+.+..         ..      -...+..++.+|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            4578999999999999888866443 3445554 77777666655432100         00      002467788889


Q ss_pred             CCCCC--------C-CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC----CCce----------
Q 018970          221 LQDFT--------P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR----SGFV----------  277 (348)
Q Consensus       221 ~~~~~--------~-~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~----~~~~----------  277 (348)
                      +.+..        . ..+...++++-.++.+++.+....+++.+.+.. |+|.+++.+.+..    ..+.          
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~~l~~~  254 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSNLKES  254 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHHHhhcc
Confidence            87731        1 224678999999999999999999999999987 7888877665433    1110          


Q ss_pred             ecCCCCce--ecCHHHHHHHHHhcCCe
Q 018970          278 LDKEDRSI--TRSDFYFKELFSRCGLH  302 (348)
Q Consensus       278 ~d~~~~~~--~~s~~~l~~l~~~aGf~  302 (348)
                      ....-.+.  ..+.+...+.|.++||.
T Consensus       255 rg~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          255 RNLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             HCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             cCCcccccccCCCHHHHHHHHHHCCCC
Confidence            11111111  13777888889999997

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.57  E-value=0.0042  Score=58.29  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=49.6

Q ss_pred             CCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC
Q 018970          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF  224 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~  224 (348)
                      ++..|||||.|.|.+|..|++.. +..|+++|+++.++...++.+ .        ..+++++.+|+.++
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--------~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--------GSPLQILKRDPYDW  117 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--------TSSCEEECSCTTCH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--------CCCEEEEECCccch
Confidence            35789999999999999999763 457999999999999998876 2        24688899998665

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.45  E-value=0.024  Score=52.69  Aligned_cols=144  Identities=17%  Similarity=0.139  Sum_probs=94.2

Q ss_pred             CcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC---CCceeE
Q 018970          159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYDV  233 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~  233 (348)
                      .+++|+=||.|.++..+...++  ..|.++|+++..++.-+.++..           ..+...|+.++...   ...+|+
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-----------~~~~~~DI~~~~~~~~~~~~~D~   72 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-----------TNLLNRNIQQLTPQVIKKWNVDT   72 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------SCEECCCGGGCCHHHHHHTTCCE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-----------CceeccccccCCHHHhccCCCCE
Confidence            4799999999999999987776  4689999999999999988754           33556777766421   135899


Q ss_pred             EeechhhhcC---------Chh--h-HHHHHHHHHHcCC-CCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcC
Q 018970          234 IWVQWCIGHL---------TDD--D-FVSFFKRAKVGLK-PGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCG  300 (348)
Q Consensus       234 Ii~~~~l~~~---------~~~--d-~~~~l~~~~~~Lk-pgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aG  300 (348)
                      ++.......+         .++  . +..++ ++.+.++ |  .+++.||+..-..         ....+.+.+.|++.|
T Consensus        73 l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~-r~i~~~~~P--~~~vlENV~gl~~---------~~~~~~i~~~l~~~G  140 (333)
T 4h0n_A           73 ILMSPPCQPFTRNGKYLDDNDPRTNSFLYLI-GILDQLDNV--DYILMENVKGFEN---------STVRNLFIDKLKECN  140 (333)
T ss_dssp             EEECCCCCCSEETTEECCTTCTTSCCHHHHH-HHGGGCTTC--CEEEEEECTTGGG---------SHHHHHHHHHHHHTT
T ss_pred             EEecCCCcchhhhhhccCCcCcccccHHHHH-HHHHHhcCC--CEEEEecchhhhh---------hhHHHHHHHHHHhCC
Confidence            9964433322         111  1 12222 3444454 6  6777787753110         012467889999999


Q ss_pred             CeEEEEeec---CCCCccceEEEEEEEe
Q 018970          301 LHIYKSKDQ---KGLPEELFAVKMYALT  325 (348)
Q Consensus       301 f~~v~~~~~---~~~~~~l~~v~~~~l~  325 (348)
                      |.+......   .+.|..--.+.+.+.+
T Consensus       141 Y~v~~~vl~a~~~GvPQ~R~R~fiva~r  168 (333)
T 4h0n_A          141 FIYQEFLLCPSTVGVPNSRLRYYCTARR  168 (333)
T ss_dssp             EEEEEEEECTTTTTCSCCCCEEEEEEEE
T ss_pred             CeEEEEEecHHHcCCCccceEEEEEEEe
Confidence            998775543   3467665566666655

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.33  E-value=0.0032  Score=57.01  Aligned_cols=145  Identities=9%  Similarity=0.005  Sum_probs=98.2

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-C---CCCCCceeE
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F---TPETGRYDV  233 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~---~~~~~~fD~  233 (348)
                      +..+||+=+|+|.++..++..+ ++++.+|.++..++..++++..        ..++.++..|... +   ..+..+||+
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~--------~~~~~V~~~D~~~~L~~l~~~~~~fdL  162 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHF--------NKKVYVNHTDGVSKLNALLPPPEKRGL  162 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCT--------TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred             CCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCc--------CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence            3578999999999999998744 7899999999999999998865        3568888888543 1   233357999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHH--cCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCC
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKG  311 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~--~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~  311 (348)
                      |++-..+..-.  +...+++.+.+  .+.|+|++++--++...            ...+.+.+-+++.|.++...+....
T Consensus       163 VfiDPPYe~k~--~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~------------~~~~~~~~~l~~~~~~~l~~el~~~  228 (283)
T 2oo3_A          163 IFIDPSYERKE--EYKEIPYAIKNAYSKFSTGLYCVWYPVVNK------------AWTEQFLRKMREISSKSVRIELHLN  228 (283)
T ss_dssp             EEECCCCCSTT--HHHHHHHHHHHHHHHCTTSEEEEEEEESSH------------HHHHHHHHHHHHHCSSEEEEEEECC
T ss_pred             EEECCCCCCCc--HHHHHHHHHHHhCccCCCeEEEEEEeccch------------HHHHHHHHHHHhcCCCeEEEEEEec
Confidence            99988776423  56666666655  45789999986544321            1234566777777765444332221


Q ss_pred             --CCccceEEEEEEEe
Q 018970          312 --LPEELFAVKMYALT  325 (348)
Q Consensus       312 --~~~~l~~v~~~~l~  325 (348)
                        .+..+...-|+++-
T Consensus       229 ~~~~~gm~gsGm~viN  244 (283)
T 2oo3_A          229 PLINEGMTGCGLWIIN  244 (283)
T ss_dssp             CSSCCSCCEEEEEEES
T ss_pred             CCCCCCcCceeEEEEC
Confidence              11344556666654

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.28  E-value=0.014  Score=53.56  Aligned_cols=130  Identities=14%  Similarity=0.098  Sum_probs=73.0

Q ss_pred             CCCCcEEEEeccccHHHHHHH----HhCCC---cEEEEcCCH------------HHHHHHHHHhCCCCCCCcCCCcceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLL----IRYFN---EVDLLEPVS------------HFLDAARESLAPENHMAPDMHKATNF  216 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la----~~~~~---~v~~vD~S~------------~~l~~a~~~~~~~~~~~~~~~~~i~~  216 (348)
                      .+.-+|||+|-|+|.......    +..+.   +++.+|..+            ...+.........    ..-....++
T Consensus        95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~----~~~~v~L~l  170 (308)
T 3vyw_A           95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEY----EGERLSLKV  170 (308)
T ss_dssp             CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEE----ECSSEEEEE
T ss_pred             CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccc----cCCcEEEEE
Confidence            344689999999998654322    22333   455555311            1112122221110    000124556


Q ss_pred             EEcCCCC-CC-CCCCceeEEeech-hhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHH
Q 018970          217 FCVPLQD-FT-PETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFK  293 (348)
Q Consensus       217 ~~~d~~~-~~-~~~~~fD~Ii~~~-~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~  293 (348)
                      ..+|+.+ ++ .+...||+|+.-. +-..-++=--..+++.++++++|||.|.-..                  +...++
T Consensus       171 ~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt------------------aag~VR  232 (308)
T 3vyw_A          171 LLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS------------------SSLSVR  232 (308)
T ss_dssp             EESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC------------------CCHHHH
T ss_pred             EechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe------------------CcHHHH
Confidence            6677654 22 2335799999632 2122121112589999999999999875322                  123588


Q ss_pred             HHHHhcCCeEEEEe
Q 018970          294 ELFSRCGLHIYKSK  307 (348)
Q Consensus       294 ~l~~~aGf~~v~~~  307 (348)
                      +.|.++||.+....
T Consensus       233 R~L~~aGF~V~k~~  246 (308)
T 3vyw_A          233 KSLLTLGFKVGSSR  246 (308)
T ss_dssp             HHHHHTTCEEEEEE
T ss_pred             HHHHHCCCEEEecC
Confidence            99999999977653

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.28  E-value=0.0035  Score=56.73  Aligned_cols=117  Identities=12%  Similarity=0.063  Sum_probs=71.1

Q ss_pred             CCCCCcEEEEec------cccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC
Q 018970          155 NNQHLVALDCGS------GIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP  226 (348)
Q Consensus       155 ~~~~~~VLDvGc------G~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  226 (348)
                      .+.+.+|||+||      -+|...  +...++.  .|+++|+.+-..                 .. -.++++|..+...
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~V--Lr~~~p~g~~VVavDL~~~~s-----------------da-~~~IqGD~~~~~~  166 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTAV--LRQWLPTGTLLVDSDLNDFVS-----------------DA-DSTLIGDCATVHT  166 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHHH--HHHHSCTTCEEEEEESSCCBC-----------------SS-SEEEESCGGGEEE
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHHH--HHHhCCCCcEEEEeeCccccc-----------------CC-CeEEEcccccccc
Confidence            677899999996      677742  2222443  689999764211                 11 2447888765443


Q ss_pred             CCCceeEEeechhhh---cCChhh------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHH
Q 018970          227 ETGRYDVIWVQWCIG---HLTDDD------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFS  297 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~---~~~~~d------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~  297 (348)
                      . ++||+|++-.+-.   +..-+.      .+.++.-+.+.|+|||.|++.-....        .      .+++.++.+
T Consensus       167 ~-~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs--------g------~~~L~~lrk  231 (344)
T 3r24_A          167 A-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS--------W------NADLYKLMG  231 (344)
T ss_dssp             S-SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS--------C------CHHHHHHHT
T ss_pred             C-CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC--------C------HHHHHHHHh
Confidence            3 7899999743221   211111      45567778889999999999853221        1      133555553


Q ss_pred             hcCCeEEEEee
Q 018970          298 RCGLHIYKSKD  308 (348)
Q Consensus       298 ~aGf~~v~~~~  308 (348)
                        -|+.+....
T Consensus       232 --~F~~VK~fK  240 (344)
T 3r24_A          232 --HFSWWTAFV  240 (344)
T ss_dssp             --TEEEEEEEE
T ss_pred             --hCCeEEEEC
Confidence              687777654

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.23  E-value=0.007  Score=56.10  Aligned_cols=72  Identities=13%  Similarity=0.186  Sum_probs=55.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~  227 (348)
                      +.++..++|+.||.|..+..+++.. .. .|+++|.++.+++.++ ++.         ..+++++..++.++.     ..
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~---------~~Rv~lv~~nF~~l~~~L~~~g  124 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID---------DPRFSIIHGPFSALGEYVAERD  124 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC---------CTTEEEEESCGGGHHHHHHHTT
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc---------CCcEEEEeCCHHHHHHHHHhcC
Confidence            5788899999999999999999774 32 7999999999999984 431         356888888887753     11


Q ss_pred             -CCceeEEee
Q 018970          228 -TGRYDVIWV  236 (348)
Q Consensus       228 -~~~fD~Ii~  236 (348)
                       .+++|.|++
T Consensus       125 ~~~~vDgILf  134 (347)
T 3tka_A          125 LIGKIDGILL  134 (347)
T ss_dssp             CTTCEEEEEE
T ss_pred             CCCcccEEEE
Confidence             136888884

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.02  E-value=0.068  Score=49.16  Aligned_cols=146  Identities=14%  Similarity=0.099  Sum_probs=95.4

Q ss_pred             cEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEeech
Q 018970          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQW  238 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii~~~  238 (348)
                      +|||+=||.|.++..+-..++.-|.++|+++.+++.-+.++..            .+...|+.++... -...|+++...
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~------------~~~~~DI~~i~~~~~~~~D~l~ggp   69 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA------------KLIKGDISKISSDEFPKCDGIIGGP   69 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCS------------EEEESCGGGCCGGGSCCCSEEECCC
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC------------CcccCChhhCCHhhCCcccEEEecC
Confidence            6999999999999999888888889999999999988888643            3566788776522 24689999643


Q ss_pred             hhhcC---------Chh--hHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          239 CIGHL---------TDD--DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       239 ~l~~~---------~~~--d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      ....+         .|+  .+-.-+-++.+.++|  .+++.||+..  +. ....   ...-..+.+.|++.||.+....
T Consensus        70 PCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~P--k~~~~ENV~g--l~-~~~~---~~~~~~i~~~l~~~GY~v~~~v  141 (331)
T 3ubt_Y           70 PSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKP--IFFLAENVKG--MM-AQRH---NKAVQEFIQEFDNAGYDVHIIL  141 (331)
T ss_dssp             CGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCC--SEEEEEECCG--GG-GCTT---SHHHHHHHHHHHHHTEEEEEEE
T ss_pred             CCCCcCCCCCccCCCCchhHHHHHHHHHHhccCC--eEEEeeeecc--cc-cccc---cchhhhhhhhhccCCcEEEEEe
Confidence            32222         221  122223345555788  4667787643  11 0001   1233567788999999876644


Q ss_pred             e---cCCCCccceEEEEEEEe
Q 018970          308 D---QKGLPEELFAVKMYALT  325 (348)
Q Consensus       308 ~---~~~~~~~l~~v~~~~l~  325 (348)
                      .   ..+.|..--.+.+.+.+
T Consensus       142 lna~~yGvPQ~R~Rvfivg~r  162 (331)
T 3ubt_Y          142 LNANDYGVAQDRKRVFYIGFR  162 (331)
T ss_dssp             EEGGGTTCSBCCEEEEEEEEE
T ss_pred             cccccCCCCcccceEEEEEEc
Confidence            3   34677776666666665

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.97  E-value=0.011  Score=52.98  Aligned_cols=57  Identities=14%  Similarity=0.118  Sum_probs=45.0

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~  202 (348)
                      .++..++...     ..++..|||..||+|..+...+..+. .++|+|+++.+++.+++++..
T Consensus       200 ~l~~~~i~~~-----~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          200 DLIERIIRAS-----SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             HHHHHHHHHH-----CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHh
Confidence            4555555432     35678999999999999998776555 699999999999999998764

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=95.61  E-value=0.091  Score=51.23  Aligned_cols=153  Identities=15%  Similarity=0.077  Sum_probs=92.2

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC---------
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---------  227 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---------  227 (348)
                      ...+++|+=||.|.++..+...++..|.++|+++..++.-+.++..        .....+++.|+.++...         
T Consensus        87 ~~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~--------~p~~~~~~~DI~~i~~~~~~~~~~~~  158 (482)
T 3me5_A           87 YAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYC--------DPATHHFNEDIRDITLSHQEGVSDEA  158 (482)
T ss_dssp             CSEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCC--------CTTTCEEESCTHHHHCTTCTTSCHHH
T ss_pred             ccceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhccc--------CCCcceeccchhhhhhccccccchhh
Confidence            3568999999999999999877877799999999999988888743        12344566676554311         


Q ss_pred             --------CCceeEEeechhhhcCCh-----------------h---hHHHHHHHHHHcCCCCcEEEEEecccCCCceec
Q 018970          228 --------TGRYDVIWVQWCIGHLTD-----------------D---DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD  279 (348)
Q Consensus       228 --------~~~fD~Ii~~~~l~~~~~-----------------~---d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d  279 (348)
                              ...+|+|+.......+.-                 +   .+-.-+-++.+.++|  .+++.||+..-..   
T Consensus       159 ~~~~i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rP--k~fvlENV~gl~s---  233 (482)
T 3me5_A          159 AAEHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP--AMFVLENVKNLKS---  233 (482)
T ss_dssp             HHHHHHHHSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCC--SEEEEEEETTTTT---
T ss_pred             HHhhhhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCC--cEEEEeCcHHHhc---
Confidence                    135899986543332221                 0   111222234444577  5677787653111   


Q ss_pred             CCCCceecCHHHHHHHHHhcCCeEEE----------Ee-ecCCCCccceEEEEEEEe
Q 018970          280 KEDRSITRSDFYFKELFSRCGLHIYK----------SK-DQKGLPEELFAVKMYALT  325 (348)
Q Consensus       280 ~~~~~~~~s~~~l~~l~~~aGf~~v~----------~~-~~~~~~~~l~~v~~~~l~  325 (348)
                         ......-..+.+.|++.||.+..          .. -....|..--.+.+.+.+
T Consensus       234 ---~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r  287 (482)
T 3me5_A          234 ---HDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFR  287 (482)
T ss_dssp             ---GGGGHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEE
T ss_pred             ---ccCCcHHHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEe
Confidence               00012335678889999998731          11 111256665566666655

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=94.95  E-value=0.082  Score=50.04  Aligned_cols=47  Identities=23%  Similarity=0.319  Sum_probs=36.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC------CC--cEEEEcCCHHHHHHHHHHhCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY------FN--EVDLLEPVSHFLDAARESLAP  202 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~------~~--~v~~vD~S~~~l~~a~~~~~~  202 (348)
                      ..+..|+|+|+|.|.++..++...      +.  +++.||+|+...+.-++.+..
T Consensus        79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  133 (387)
T 1zkd_A           79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  133 (387)
T ss_dssp             CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence            345689999999999998887531      11  799999999988877776654

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=94.79  E-value=0.27  Score=43.81  Aligned_cols=132  Identities=8%  Similarity=0.082  Sum_probs=78.9

Q ss_pred             CCCCcEEEEeccccHHHHHHHHh-------CC-CcEEEEc-----CCHH----------------------HHHHH---H
Q 018970          156 NQHLVALDCGSGIGRITKNLLIR-------YF-NEVDLLE-----PVSH----------------------FLDAA---R  197 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~-------~~-~~v~~vD-----~S~~----------------------~l~~a---~  197 (348)
                      +-+..|+|+||-.|..+..++..       +. ..|+++|     +.+.                      .++..   .
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            34578999999999988776532       12 3799988     3221                      11111   1


Q ss_pred             HHhCCCCCCCcCCCcceeEEEcCCCCC-C-----CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          198 ESLAPENHMAPDMHKATNFFCVPLQDF-T-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       198 ~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-----~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      ++....+..    ..+++++.+++.+. +     .+.++||+|++-.-..    +.....+..+...|+|||++++-+..
T Consensus       148 ~~~~~~g~~----~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y----~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          148 ECSDFFGHV----TQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY----EPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             HTTSTTTTS----CCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH----HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             hhhhhcCCC----CCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc----chHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            122222211    36799999987652 2     2335799999755321    13567889999999999999887631


Q ss_pred             cCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          272 ARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       272 ~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      . ..+         .--..-|.+.+.+.|.++..
T Consensus       220 ~-~~w---------~G~~~A~~ef~~~~~~~i~~  243 (257)
T 3tos_A          220 N-PKW---------PGENIAMRKVLGLDHAPLRL  243 (257)
T ss_dssp             C-TTC---------THHHHHHHHHTCTTSSCCEE
T ss_pred             C-CCC---------hHHHHHHHHHHhhCCCeEEE
Confidence            1 000         01123466677777766544

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.34  E-value=0.14  Score=47.90  Aligned_cols=96  Identities=14%  Similarity=-0.015  Sum_probs=64.5

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CC
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~  227 (348)
                      +.++.+||-+|||. |.++..+++. +...|+++|.++..++.+++.-..            .++...-.++.     ..
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~~~~  255 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT------------HVINSKTQDPVAAIKEIT  255 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC------------EEecCCccCHHHHHHHhc
Confidence            67888999999986 8888888765 443699999999999998764221            11111111110     11


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      .+.+|+|+-.-.-        ...++.+.++|+|||.+++...
T Consensus       256 ~gg~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          256 DGGVNFALESTGS--------PEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             TSCEEEEEECSCC--------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCCcEEEECCCC--------HHHHHHHHHHHhcCCEEEEeCC
Confidence            2369999854321        2467888999999999988643

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.15  E-value=0.26  Score=46.06  Aligned_cols=99  Identities=18%  Similarity=0.034  Sum_probs=64.7

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC----CC-CCCC
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QD-FTPE  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~----~~-~~~~  227 (348)
                      +.++.+||-+|+|. |.++..+++.. ...|+++|.++..++.+++.-...         .+++...|+    .+ ....
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~~~i~~~~~~~  250 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA---------TVDPSAGDVVEAIAGPVGLV  250 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE---------EECTTSSCHHHHHHSTTSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE---------EECCCCcCHHHHHHhhhhcc
Confidence            67788999999976 77888887654 437999999999999887752210         011101111    00 0011


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      .+.+|+|+-+-.        ....++.+.++|++||.+++...
T Consensus       251 ~gg~Dvvid~~G--------~~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          251 PGGVDVVIECAG--------VAETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             TTCEEEEEECSC--------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCEEEECCC--------CHHHHHHHHHHhccCCEEEEEec
Confidence            247999986422        12467888899999999988643

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=93.99  E-value=0.31  Score=51.64  Aligned_cols=150  Identities=16%  Similarity=0.075  Sum_probs=92.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC------------C
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL------------Q  222 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~------------~  222 (348)
                      ....+++|+=||.|.++..|...++ ..+.++|+++.+++.-+.++..           ..++..|+            .
T Consensus       538 ~~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p~-----------~~~~~~DI~~l~~~~~~~di~  606 (1002)
T 3swr_A          538 LPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPG-----------STVFTEDCNILLKLVMAGETT  606 (1002)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCTT-----------SEEECSCHHHHHHHHHHTCSB
T ss_pred             CCCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC-----------CccccccHHHHhhhccchhhh
Confidence            4456899999999999999988887 5689999999999988888754           22333332            1


Q ss_pred             C-----CCCCCCceeEEeechhhhcCCh---------hh----HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCc
Q 018970          223 D-----FTPETGRYDVIWVQWCIGHLTD---------DD----FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRS  284 (348)
Q Consensus       223 ~-----~~~~~~~fD~Ii~~~~l~~~~~---------~d----~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~  284 (348)
                      +     ++ ..+.+|+|+.......+..         ++    +..-+-++.+.++|  .+++.||+..-.   . ... 
T Consensus       607 ~~~~~~lp-~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~riv~~~rP--k~~llENV~gll---s-~~~-  678 (1002)
T 3swr_A          607 NSRGQRLP-QKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRP--RFFLLENVRNFV---S-FKR-  678 (1002)
T ss_dssp             CTTCCBCC-CTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHHHHHHCC--SEEEEEEEGGGG---T-TGG-
T ss_pred             hhhhhhcc-cCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHHHHHHhCC--CEEEEeccHHHh---c-cCc-
Confidence            1     22 2357999996543332211         11    11122344455677  567777764310   0 000 


Q ss_pred             eecCHHHHHHHHHhcCCeEEEEee---cCCCCccceEEEEEEEe
Q 018970          285 ITRSDFYFKELFSRCGLHIYKSKD---QKGLPEELFAVKMYALT  325 (348)
Q Consensus       285 ~~~s~~~l~~l~~~aGf~~v~~~~---~~~~~~~l~~v~~~~l~  325 (348)
                       ......+.+.|++.||.+.....   ..+.|..--.+.+.+.+
T Consensus       679 -~~~~~~i~~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fiva~r  721 (1002)
T 3swr_A          679 -SMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAA  721 (1002)
T ss_dssp             -GHHHHHHHHHHHHHTCEEEEEEEEGGGGTCSBCCEEEEEEEEC
T ss_pred             -chHHHHHHHHHHhcCCeEEEEEEEHHHCCCCccceEEEEEEEe
Confidence             12235677888999999766433   34567765666666654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=93.80  E-value=0.082  Score=48.99  Aligned_cols=92  Identities=15%  Similarity=0.017  Sum_probs=64.0

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      +.++.+||-+|+|. |.++..+++....+|++++.+++.++.+++.-.+           . +. .+.+.+.   ..+|+
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-----------~-v~-~~~~~~~---~~~D~  237 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVK-----------H-FY-TDPKQCK---EELDF  237 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCS-----------E-EE-SSGGGCC---SCEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCC-----------e-ec-CCHHHHh---cCCCE
Confidence            67888999999986 7888888766444799999999999988763211           1 11 2322222   27999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      |+-.-.-.        ..+..+.++|+|||.+++...
T Consensus       238 vid~~g~~--------~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          238 IISTIPTH--------YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             EEECCCSC--------CCHHHHHTTEEEEEEEEECCC
T ss_pred             EEECCCcH--------HHHHHHHHHHhcCCEEEEECC
Confidence            98643211        246678889999999998643

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.73  E-value=0.11  Score=47.15  Aligned_cols=91  Identities=10%  Similarity=0.047  Sum_probs=56.0

Q ss_pred             ceeEEEcCCCCC-C-CCCCceeEEeechhhhcCCh------------------hhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          213 ATNFFCVPLQDF-T-PETGRYDVIWVQWCIGHLTD------------------DDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       213 ~i~~~~~d~~~~-~-~~~~~fD~Ii~~~~l~~~~~------------------~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                      .+.++++|..+. . .++++||+|+++.......+                  ..+..+++++.++|||||.+++.....
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~  100 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV  100 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence            467888887662 2 34579999999876643211                  123567889999999999998864321


Q ss_pred             CCCceecCCCCc-eec-CHHHHHHHHHhcCCeEEEE
Q 018970          273 RSGFVLDKEDRS-ITR-SDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       273 ~~~~~~d~~~~~-~~~-s~~~l~~l~~~aGf~~v~~  306 (348)
                      .   ........ ... -...+..+++++||.....
T Consensus       101 ~---~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~  133 (297)
T 2zig_A          101 A---VARRRFGRHLVFPLHADIQVRCRKLGFDNLNP  133 (297)
T ss_dssp             E---EECC----EEEECHHHHHHHHHHHTTCEEEEE
T ss_pred             c---cccccCCcccccccHHHHHHHHHHcCCeeecc
Confidence            0   00000000 011 1346778899999987763

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.72  E-value=0.18  Score=42.38  Aligned_cols=92  Identities=12%  Similarity=0.025  Sum_probs=59.5

Q ss_pred             CCCCCcEEEEec--cccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------
Q 018970          155 NNQHLVALDCGS--GIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------  225 (348)
Q Consensus       155 ~~~~~~VLDvGc--G~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------  225 (348)
                      +.++.+||..|+  |.|..+..++.. +. +|+++|.+++.++.+++. ..          . ..  .|..+..      
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~-g~----------~-~~--~d~~~~~~~~~~~  100 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRL-GV----------E-YV--GDSRSVDFADEIL  100 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTT-CC----------S-EE--EETTCSTHHHHHH
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc-CC----------C-EE--eeCCcHHHHHHHH
Confidence            567889999994  567776666654 54 699999999888776542 10          0 11  1222111      


Q ss_pred             --CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          226 --PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       226 --~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                        ...+.+|+|+.+-.    .     ..++.+.++|+|||.+++...
T Consensus       101 ~~~~~~~~D~vi~~~g----~-----~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          101 ELTDGYGVDVVLNSLA----G-----EAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             HHTTTCCEEEEEECCC----T-----HHHHHHHHTEEEEEEEEECSC
T ss_pred             HHhCCCCCeEEEECCc----h-----HHHHHHHHHhccCCEEEEEcC
Confidence              11236999986432    1     357788899999999988643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.69  E-value=0.11  Score=49.14  Aligned_cols=102  Identities=9%  Similarity=-0.118  Sum_probs=64.7

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-C-----C
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-----P  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-----~  226 (348)
                      +.++.+||.+|||. |.++..+++. +...|+++|.|+..++.+++. .            .+++...-.++ .     .
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-G------------a~~i~~~~~~~~~~~~~~~  249 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA-G------------FETIDLRNSAPLRDQIDQI  249 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT-T------------CEEEETTSSSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-C------------CcEEcCCCcchHHHHHHHH
Confidence            67888999999987 8888888765 443799999999999888642 1            11221111111 0     0


Q ss_pred             -CCCceeEEeechhhhcCC------hhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          227 -ETGRYDVIWVQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       227 -~~~~fD~Ii~~~~l~~~~------~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                       ....+|+|+-.-.-....      ..+....++.+.++|++||.+++..
T Consensus       250 ~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          250 LGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             HSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             hCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence             112699998644322100      0001246788899999999988754

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.60  E-value=0.17  Score=46.68  Aligned_cols=95  Identities=18%  Similarity=0.050  Sum_probs=64.3

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCC
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~  229 (348)
                      +.++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++.-..            .++...-.++.    ...+
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~~i~~~~~~~~~~~~~~~g  231 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAE------------VAVNARDTDPAAWLQKEIG  231 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC------------EEEeCCCcCHHHHHHHhCC
Confidence            67888999999986 8888888876544799999999999988764221            11111111110    0113


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+|+|+....        ....++.+.++|+|||.+++..
T Consensus       232 ~~d~vid~~g--------~~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          232 GAHGVLVTAV--------SPKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             SEEEEEESSC--------CHHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCEEEEeCC--------CHHHHHHHHHHhccCCEEEEeC
Confidence            6898875422        1246788889999999998864

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=93.14  E-value=0.54  Score=43.55  Aligned_cols=95  Identities=18%  Similarity=0.102  Sum_probs=62.5

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC---CCCC----C
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQDF----T  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d---~~~~----~  225 (348)
                      +.++.+||-+|+|. |.++..++..... .|+++|.++..++.+++.-..            .++..+   -.++    .
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~~i~  236 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD------------LVLQISKESPQEIARKVE  236 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS------------EEEECSSCCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC------------EEEcCcccccchHHHHHH
Confidence            67788999999986 7888888765443 799999999999888753211            111111   0000    0


Q ss_pred             -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                       ...+.+|+|+-.-.-        ...+..+.++|+|||.+++..
T Consensus       237 ~~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          237 GQLGCKPEVTIECTGA--------EASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HHHTSCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECS
T ss_pred             HHhCCCCCEEEECCCC--------hHHHHHHHHHhcCCCEEEEEe
Confidence             001468999854321        245678889999999998754

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=93.12  E-value=0.15  Score=48.73  Aligned_cols=48  Identities=23%  Similarity=0.320  Sum_probs=40.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHH-HhCC--CcEEEEcCCHHHHHHHHHHhCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLL-IRYF--NEVDLLEPVSHFLDAARESLAP  202 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la-~~~~--~~v~~vD~S~~~l~~a~~~~~~  202 (348)
                      +.++..|+||||+.|.++..++ ....  ..|+++|++|...+..++++..
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            4678899999999999999887 3443  4799999999999999988754

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=93.09  E-value=2.9  Score=38.58  Aligned_cols=151  Identities=14%  Similarity=0.078  Sum_probs=90.6

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCC--------------CCC--Cc-CCCcceeEE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPE--------------NHM--AP-DMHKATNFF  217 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~--------------~~~--~~-~~~~~i~~~  217 (348)
                      +...|+-+|||-=.....+......  .+.=+|. |+.++.=++.+...              ...  .. -...+..++
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v  168 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI  168 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence            3568999999987777766654322  4555554 33333222222110              000  00 002456778


Q ss_pred             EcCCCCCC----------CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC-Cce------e--
Q 018970          218 CVPLQDFT----------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS-GFV------L--  278 (348)
Q Consensus       218 ~~d~~~~~----------~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~-~~~------~--  278 (348)
                      .+|+.+..          +..+.--++++-.++.+++.++...+|+.+.+.. |+|.+++.|.+... .|.      +  
T Consensus       169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d~fg~~M~~~l~~  247 (334)
T 3iei_A          169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGDRFGQIMIENLRR  247 (334)
T ss_dssp             ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTSHHHHHHHHHHHT
T ss_pred             ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCCHHHHHHHHHHHH
Confidence            88887621          2234456888899999999989999999999876 56666676755322 220      0  


Q ss_pred             -cCCCCce--ecCHHHHHHHHHhcCCeEEEEeec
Q 018970          279 -DKEDRSI--TRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       279 -d~~~~~~--~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                       ...-.++  ..+.+...+.|.++||..+.....
T Consensus       248 ~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~  281 (334)
T 3iei_A          248 RQCDLAGVETCKSLESQKERLLSNGWETASAVDM  281 (334)
T ss_dssp             TTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred             hCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence             1111111  247788899999999998775543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=93.06  E-value=0.22  Score=45.61  Aligned_cols=92  Identities=9%  Similarity=0.021  Sum_probs=61.0

Q ss_pred             CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC---CC----
Q 018970          155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FT----  225 (348)
Q Consensus       155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~---~~----  225 (348)
                      +.++.+||-.||  |.|..+..++.....+|+++|.+++.++.+++ +..          .. .  .|..+   +.    
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~g~----------~~-~--~d~~~~~~~~~~~~  208 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-IGF----------DA-A--FNYKTVNSLEEALK  208 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTC----------SE-E--EETTSCSCHHHHHH
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cCC----------cE-E--EecCCHHHHHHHHH
Confidence            667889999998  56777777766543379999999998888843 321          01 1  12222   10    


Q ss_pred             -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                       ...+.+|+|+.+-.-         ..++.+.++|++||.+++..
T Consensus       209 ~~~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          209 KASPDGYDCYFDNVGG---------EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             HHCTTCEEEEEESSCH---------HHHHHHHTTEEEEEEEEECC
T ss_pred             HHhCCCCeEEEECCCh---------HHHHHHHHHHhcCCEEEEEe
Confidence             011479999865431         24678889999999998754

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=92.95  E-value=0.41  Score=44.23  Aligned_cols=95  Identities=15%  Similarity=-0.021  Sum_probs=62.2

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC-CCCCC------C
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFT------P  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~------~  226 (348)
                      +.++.+||-+|+|. |..+..++......|+++|.+++.++.+++.-..            .+...+ -.++.      .
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~~~~~~~~~~~~~~i~~~~  233 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD------------VTLVVDPAKEEESSIIERI  233 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------------EEEECCTTTSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC------------EEEcCcccccHHHHHHHHh
Confidence            67788999999875 7777877765444599999999999988753211            111111 01111      0


Q ss_pred             C---CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          227 E---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       227 ~---~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .   ...+|+|+-+-.-        ...++.+.++|+|+|.+++..
T Consensus       234 ~~~~g~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          234 RSAIGDLPNVTIDCSGN--------EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             HHHSSSCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECS
T ss_pred             ccccCCCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence            0   1468999854321        235678889999999998764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=92.89  E-value=0.38  Score=44.47  Aligned_cols=96  Identities=17%  Similarity=0.013  Sum_probs=64.0

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------C
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~  226 (348)
                      +.++.+||-+|+|. |.++..+++.... .|+++|.+++.++.+++.-..            .++...-.++.      .
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~v~~~t  231 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT------------DIINYKNGDIVEQILKAT  231 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC------------EEECGGGSCHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc------------eEEcCCCcCHHHHHHHHc
Confidence            67888999999986 7788888765443 799999999999988775321            11111111110      1


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      ....+|+|+-.-.-        ...++.+.++|+|||.+++...
T Consensus       232 ~g~g~D~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~G~  267 (352)
T 3fpc_A          232 DGKGVDKVVIAGGD--------VHTFAQAVKMIKPGSDIGNVNY  267 (352)
T ss_dssp             TTCCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCCEEEECCCC--------hHHHHHHHHHHhcCCEEEEecc
Confidence            12369999853221        1367788889999999988643

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.77  E-value=0.53  Score=43.63  Aligned_cols=97  Identities=20%  Similarity=0.031  Sum_probs=65.3

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC--CCCC-----
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL--QDFT-----  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~--~~~~-----  225 (348)
                      +.++.+||-+|+|. |.++..+++.... .|+++|.|++-++.+++. ...         .+.+...+.  .++.     
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~---------~~~~~~~~~~~~~~~~~v~~  246 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE---------VVTHKVERLSAEESAKKIVE  246 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT---------CEEEECCSCCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh---------cccccccccchHHHHHHHHH
Confidence            67888999999976 7788888766443 599999999999999887 421         122221110  0110     


Q ss_pred             -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                       .....+|+|+-.-.-        ...+..+.++|++||.+++..
T Consensus       247 ~t~g~g~Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          247 SFGGIEPAVALECTGV--------ESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             HTSSCCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECC
T ss_pred             HhCCCCCCEEEECCCC--------hHHHHHHHHHhcCCCEEEEEc
Confidence             112469999864321        246778889999999998864

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=92.75  E-value=0.34  Score=45.67  Aligned_cols=100  Identities=9%  Similarity=-0.062  Sum_probs=65.3

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CC------
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT------  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~------  225 (348)
                      +.++.+||-+|||. |.++..+++.. ...|+++|.++..++.+++. .            .+.+...-.+ +.      
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l-G------------a~~i~~~~~~~~~~~v~~~  249 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-G------------FEIADLSLDTPLHEQIAAL  249 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-T------------CEEEETTSSSCHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc-C------------CcEEccCCcchHHHHHHHH
Confidence            67888999999876 88888888764 43699999999999988653 1            1111111111 10      


Q ss_pred             CCCCceeEEeechhhh---------cCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 PETGRYDVIWVQWCIG---------HLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~---------~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .....+|+|+-.-.-.         |.+  +....++.+.++|++||.+++..
T Consensus       250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          250 LGEPEVDCAVDAVGFEARGHGHEGAKHE--APATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             HSSSCEEEEEECCCTTCBCSSTTGGGSB--CTTHHHHHHHHHEEEEEEEEECS
T ss_pred             hCCCCCCEEEECCCCccccccccccccc--chHHHHHHHHHHHhcCCEEEEec
Confidence            0113699998643321         112  23357888999999999998754

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=92.61  E-value=0.3  Score=44.99  Aligned_cols=96  Identities=10%  Similarity=0.024  Sum_probs=62.8

Q ss_pred             CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CC
Q 018970          155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE  227 (348)
Q Consensus       155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~  227 (348)
                      +.++.+||-+||  |.|..+..++.....+|++++.++..++.+++.+..        .  ..+...+..++.     ..
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~--------~--~~~d~~~~~~~~~~~~~~~  222 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGF--------D--DAFNYKEESDLTAALKRCF  222 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCC--------S--EEEETTSCSCSHHHHHHHC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC--------c--eEEecCCHHHHHHHHHHHh
Confidence            677889999997  568888777765444799999999988888754421        0  111101111111     01


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+.+|+|+.+-.       .  ..++.+.++|++||.+++..
T Consensus       223 ~~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          223 PNGIDIYFENVG-------G--KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             TTCEEEEEESSC-------H--HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCCcEEEECCC-------H--HHHHHHHHHHhcCCEEEEEc
Confidence            146999986533       1  36778889999999998854

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=92.50  E-value=0.99  Score=46.58  Aligned_cols=47  Identities=15%  Similarity=0.098  Sum_probs=38.9

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHhCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAP  202 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~------~~~v~~vD~S~~~l~~a~~~~~~  202 (348)
                      .+..+|+|+=||.|.++.-|-..+      +.-+.++|+++.+++.-+.++..
T Consensus       210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp~  262 (784)
T 4ft4_B          210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHPQ  262 (784)
T ss_dssp             CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCCC
Confidence            455789999999999998886655      55689999999999988888654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=92.38  E-value=0.3  Score=44.85  Aligned_cols=95  Identities=11%  Similarity=-0.021  Sum_probs=62.9

Q ss_pred             CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CC
Q 018970          155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE  227 (348)
Q Consensus       155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~  227 (348)
                      +.++.+||-+||  |.|..+..++.....+|++++.+++.++.+.+.+..           .......-.++.     ..
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~  215 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGF-----------DGAIDYKNEDLAAGLKREC  215 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC-----------SEEEETTTSCHHHHHHHHC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC-----------CEEEECCCHHHHHHHHHhc
Confidence            678889999998  568888887765444799999999988888444321           011111111110     01


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+.+|+|+.+-.       .  ..+..+.+.|++||.+++..
T Consensus       216 ~~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          216 PKGIDVFFDNVG-------G--EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             TTCEEEEEESSC-------H--HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCceEEEECCC-------c--chHHHHHHHHhhCCEEEEEe
Confidence            246999986433       1  36778889999999998854

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=92.32  E-value=0.32  Score=45.24  Aligned_cols=96  Identities=14%  Similarity=-0.059  Sum_probs=64.5

Q ss_pred             cCCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------C
Q 018970          154 RNNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P  226 (348)
Q Consensus       154 ~~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~  226 (348)
                      .+.++.+||-+|+|. |..+..+++....+|++++.++..++.+++.-..            .++..+-.++.      .
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~v~~~~  253 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGAD------------HGINRLEEDWVERVYALT  253 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCC------------EEEcCCcccHHHHHHHHh
Confidence            367889999999886 7778888766444799999999999988764221            11111111111      0


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      ....+|+|+-+-.    .     ..+..+.++|+|||.+++...
T Consensus       254 ~g~g~D~vid~~g----~-----~~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          254 GDRGADHILEIAG----G-----AGLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             TTCCEEEEEEETT----S-----SCHHHHHHHEEEEEEEEEECC
T ss_pred             CCCCceEEEECCC----h-----HHHHHHHHHhhcCCEEEEEec
Confidence            1236999986543    1     245667789999999998754

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.18  E-value=0.12  Score=48.45  Aligned_cols=95  Identities=16%  Similarity=0.020  Sum_probs=61.9

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC-CCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~fD  232 (348)
                      +.++.+||-+|+|. |.++..+++.....|++++.|++.++.+++.-..         .-++....+ +..+.   +.+|
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~---------~vi~~~~~~~~~~~~---~g~D  259 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD---------EVVNSRNADEMAAHL---KSFD  259 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS---------EEEETTCHHHHHTTT---TCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc---------EEeccccHHHHHHhh---cCCC
Confidence            67788999999985 7788888765444699999999999988763211         001100001 11111   4699


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|+-.-.-.        ..++.+.++|+|+|.+++..
T Consensus       260 vvid~~g~~--------~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          260 FILNTVAAP--------HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             EEEECCSSC--------CCHHHHHTTEEEEEEEEECC
T ss_pred             EEEECCCCH--------HHHHHHHHHhccCCEEEEec
Confidence            998643311        23566788999999988754

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=92.02  E-value=0.31  Score=44.31  Aligned_cols=140  Identities=14%  Similarity=0.071  Sum_probs=85.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCc--EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC----C
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----T  228 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~--v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~  228 (348)
                      .....+++|+=||.|.++..+...++..  |.++|+++..++.-+.++..           ..+...|+.++...    .
T Consensus        13 ~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~-----------~~~~~~DI~~i~~~~i~~~   81 (295)
T 2qrv_A           13 KRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQG-----------KIMYVGDVRSVTQKHIQEW   81 (295)
T ss_dssp             CCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTT-----------CEEEECCGGGCCHHHHHHT
T ss_pred             cCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCC-----------CceeCCChHHccHHHhccc
Confidence            3456789999999999999998888874  69999999999888877643           34667788776521    1


Q ss_pred             CceeEEeechh---hhc-------CChh--hHHHHHHHHHHcCCCC-cE----EEEEecccCCCceecCCCCceecCHHH
Q 018970          229 GRYDVIWVQWC---IGH-------LTDD--DFVSFFKRAKVGLKPG-GF----FVLKENIARSGFVLDKEDRSITRSDFY  291 (348)
Q Consensus       229 ~~fD~Ii~~~~---l~~-------~~~~--d~~~~l~~~~~~Lkpg-G~----lii~~~~~~~~~~~d~~~~~~~~s~~~  291 (348)
                      +.+|+|+....   +..       +.|+  .+-.-+-++.+.++|. |.    +++.||+..-..          .....
T Consensus        82 ~~~Dll~ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~rii~~~~P~~~~~~P~~~l~ENV~gl~~----------~~~~~  151 (295)
T 2qrv_A           82 GPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGV----------SDKRD  151 (295)
T ss_dssp             CCCSEEEECCCCGGGBTTCTTCCTTTSTTTTHHHHHHHHHHHHSCCTTCCCCCEEEEEEESSBCH----------HHHHH
T ss_pred             CCcCEEEecCCCccccccCccccccccccchhHHHHHHHHHHhCcccccCCccEEEEEcCcchhh----------cCccH
Confidence            36899996422   111       1111  1222333455556775 32    677777653111          01123


Q ss_pred             HHHHHHhcCCeEEEEeecCCCCccceE
Q 018970          292 FKELFSRCGLHIYKSKDQKGLPEELFA  318 (348)
Q Consensus       292 l~~l~~~aGf~~v~~~~~~~~~~~l~~  318 (348)
                      +.+.++ .++.++...+. + |..--.
T Consensus       152 ~~~~l~-~~~~vl~a~~~-~-PQ~R~R  175 (295)
T 2qrv_A          152 ISRFLE-SNPVMIDAKEV-S-AAHRAR  175 (295)
T ss_dssp             HHHHHT-SCCCCEEGGGT-S-SBCCEE
T ss_pred             HHHHHh-cCcEEeecceE-C-CccCcE
Confidence            555554 36666655444 4 654333

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.69  E-value=0.25  Score=50.11  Aligned_cols=133  Identities=16%  Similarity=0.152  Sum_probs=77.4

Q ss_pred             CCCcEEEEeccccHHHHHHHHhC----------C-C--cEEEEcC---CHHHHHHHHHH-----------hCCCCCCCcC
Q 018970          157 QHLVALDCGSGIGRITKNLLIRY----------F-N--EVDLLEP---VSHFLDAARES-----------LAPENHMAPD  209 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~----------~-~--~v~~vD~---S~~~l~~a~~~-----------~~~~~~~~~~  209 (348)
                      +.-+|||+|.|+|.......+..          . .  +++.+|.   +++.+..+-..           ...+...-.+
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            44689999999999776655432          1 1  5889998   77777643221           1111000000


Q ss_pred             --------CCcceeEEEcCCCCCCC--C---CCceeEEeechh-hhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC
Q 018970          210 --------MHKATNFFCVPLQDFTP--E---TGRYDVIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG  275 (348)
Q Consensus       210 --------~~~~i~~~~~d~~~~~~--~---~~~fD~Ii~~~~-l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~  275 (348)
                              -...++...+|+.+.-.  .   ...||+|+.-.. -..-++---..+++.+.++++|||.+.-..      
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------  219 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------  219 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC------
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc------
Confidence                    01234444555543211  1   357999987331 111111113578999999999999875332      


Q ss_pred             ceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          276 FVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       276 ~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                                  ....+++.+.++||.+....
T Consensus       220 ------------~~~~vr~~L~~aGf~v~~~~  239 (676)
T 3ps9_A          220 ------------SAGFVRRGLQDAGFTMQKRK  239 (676)
T ss_dssp             ------------CCHHHHHHHHHHTCEEEEEE
T ss_pred             ------------CcHHHHHHHHhCCeEEEecc
Confidence                        11358899999999977644

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=91.58  E-value=0.19  Score=51.23  Aligned_cols=133  Identities=15%  Similarity=0.096  Sum_probs=77.7

Q ss_pred             CCCcEEEEeccccHHHHHHHHhC----------C---CcEEEEcC---CHHHHHHHHH-----------HhCCCCCCCc-
Q 018970          157 QHLVALDCGSGIGRITKNLLIRY----------F---NEVDLLEP---VSHFLDAARE-----------SLAPENHMAP-  208 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~----------~---~~v~~vD~---S~~~l~~a~~-----------~~~~~~~~~~-  208 (348)
                      +..+|||+|.|+|.......+..          .   -+++.+|.   +...+..+-.           ....+..... 
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            45699999999999877665431          1   16889998   4444443221           1111110000 


Q ss_pred             -------CCCcceeEEEcCCCCCC--CC---CCceeEEeechh-hhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC
Q 018970          209 -------DMHKATNFFCVPLQDFT--PE---TGRYDVIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG  275 (348)
Q Consensus       209 -------~~~~~i~~~~~d~~~~~--~~---~~~fD~Ii~~~~-l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~  275 (348)
                             +-...+++..+|+.+.-  ..   .+.+|.++.-.. -..-++---..+++.+.++++|||.+.-..      
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT------  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC------
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc------
Confidence                   00124556666765422  11   367999987331 111121113579999999999999865321      


Q ss_pred             ceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          276 FVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       276 ~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                                  ....+++.+.++||.+....
T Consensus       212 ------------~~~~vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          212 ------------AAGFVRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             ------------CCHHHHHHHHHTTCEEEEEE
T ss_pred             ------------CcHHHHHHHHhCCeEEEecc
Confidence                        11358899999999977654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=91.55  E-value=1.5  Score=41.33  Aligned_cols=101  Identities=12%  Similarity=-0.055  Sum_probs=61.2

Q ss_pred             cCCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------
Q 018970          154 RNNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------  225 (348)
Q Consensus       154 ~~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------  225 (348)
                      .+.++.+||-+|+|. |.++..+++.... .|+++|.++.-++.+++.-..            .++..+-.++.      
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~i~~~  277 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD------------HVIDPTKENFVEAVLDY  277 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS------------EEECTTTSCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC------------EEEcCCCCCHHHHHHHH
Confidence            367888999999975 7777877765443 799999999999998765321            11111111110      


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .....+|+|+-.-.-..   .....+++.+.+++++||.+++..
T Consensus       278 t~g~g~D~vid~~g~~~---~~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          278 TNGLGAKLFLEATGVPQ---LVWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             TTTCCCSEEEECSSCHH---HHHHHHHHHHHHCSCCCCEEEECS
T ss_pred             hCCCCCCEEEECCCCcH---HHHHHHHHHHHhccCCCcEEEEeC
Confidence            11236999985432110   012233333445559999999864

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=91.38  E-value=0.56  Score=43.10  Aligned_cols=93  Identities=17%  Similarity=0.088  Sum_probs=61.6

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC------
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------  227 (348)
                      +.++.+||-+|+|. |..+..++.....+|++++.++..++.+++. ..            +. ..|..+-...      
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l-Ga------------~~-~~d~~~~~~~~~~~~~  227 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL-GA------------DL-VVNPLKEDAAKFMKEK  227 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-TC------------SE-EECTTTSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHC-CC------------CE-EecCCCccHHHHHHHH
Confidence            56788999999964 7777777765444799999999999888752 21            01 1222211100      


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+.+|+|+.+-..        ...++.+.++|+++|.+++..
T Consensus       228 ~~~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          228 VGGVHAAVVTAVS--------KPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             HSSEEEEEESSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred             hCCCCEEEECCCC--------HHHHHHHHHHhhcCCEEEEec
Confidence            0369999864331        245678889999999998754

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=91.16  E-value=0.6  Score=42.89  Aligned_cols=96  Identities=13%  Similarity=-0.030  Sum_probs=61.4

Q ss_pred             cCCCCCcEEEEecc--ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------
Q 018970          154 RNNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------  225 (348)
Q Consensus       154 ~~~~~~~VLDvGcG--~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------  225 (348)
                      .+.++.+||-+|||  .|..+..++.....+|++++.++..++.+++.-..            ......-.++.      
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~------------~~~~~~~~~~~~~~~~~  208 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAA------------YVIDTSTAPLYETVMEL  208 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS------------EEEETTTSCHHHHHHHH
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCc------------EEEeCCcccHHHHHHHH
Confidence            36788999999987  67787777765333799999999999988874221            11111111111      


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      .....+|+|+-+-.-.         .+....++|++||.+++...
T Consensus       209 ~~~~g~Dvvid~~g~~---------~~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          209 TNGIGADAAIDSIGGP---------DGNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             TTTSCEEEEEESSCHH---------HHHHHHHTEEEEEEEEECCC
T ss_pred             hCCCCCcEEEECCCCh---------hHHHHHHHhcCCCEEEEEee
Confidence            1124799998643321         12334479999999988653

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=90.93  E-value=1.2  Score=41.35  Aligned_cols=96  Identities=15%  Similarity=-0.002  Sum_probs=62.8

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CC-CCCC-----
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QDFT-----  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~-~~~~-----  225 (348)
                      +.++.+||-+|+|. |.++..+++.... .|+++|.|++.++.+++.-..            .++.. +. .++.     
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~~~~~~  257 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT------------DFVNPNDHSEPISQVLSK  257 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC------------EEECGGGCSSCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc------------eEEeccccchhHHHHHHH
Confidence            67788999999875 7778888765443 699999999999988753211            11111 10 1110     


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCC-cEEEEEec
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN  270 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg-G~lii~~~  270 (348)
                      ...+.+|+|+-+-.-        ...++.+.++|++| |.+++...
T Consensus       258 ~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          258 MTNGGVDFSLECVGN--------VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             HHTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             HhCCCCCEEEECCCC--------HHHHHHHHHHhhcCCcEEEEEcC
Confidence            011368999854321        24678889999999 99987643

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=90.78  E-value=0.099  Score=48.35  Aligned_cols=96  Identities=15%  Similarity=-0.061  Sum_probs=62.1

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEE-cCC-CCCCCCCC
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPL-QDFTPETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~--~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~-~d~-~~~~~~~~  229 (348)
                      + ++.+||-+|+|. |.++..+++..  ..+|++++.|++.++.+++.-...         -+++.. .+. ..+. ...
T Consensus       169 ~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~---------vi~~~~~~~~~~~~~-~g~  237 (344)
T 2h6e_A          169 F-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADY---------VSEMKDAESLINKLT-DGL  237 (344)
T ss_dssp             C-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSE---------EECHHHHHHHHHHHH-TTC
T ss_pred             C-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCE---------EeccccchHHHHHhh-cCC
Confidence            5 778999999975 77777777654  336999999999999887642210         011100 110 0111 123


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+|+|+-.-.-        ...++.+.++|+|||.+++..
T Consensus       238 g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          238 GASIAIDLVGT--------EETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             CEEEEEESSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred             CccEEEECCCC--------hHHHHHHHHHhhcCCEEEEeC
Confidence            69999864331        236778889999999988754

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=90.75  E-value=0.35  Score=46.28  Aligned_cols=44  Identities=20%  Similarity=0.438  Sum_probs=35.1

Q ss_pred             CCcEEEEeccccHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHhC
Q 018970          158 HLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLA  201 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~------~~~v~~vD~S~~~l~~a~~~~~  201 (348)
                      +.+|+|+|+|+|.++..++...      ..+++.||+|+.+.+.-++.+.
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            4689999999999988887431      2379999999998877776654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=90.71  E-value=0.29  Score=45.17  Aligned_cols=94  Identities=12%  Similarity=0.006  Sum_probs=62.2

Q ss_pred             CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCC---CCC----
Q 018970          155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ---DFT----  225 (348)
Q Consensus       155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~---~~~----  225 (348)
                      +.++.+||.+|+  |.|..+..++......|++++.++..++.+++. ..          . ..  .|..   ++.    
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~-g~----------~-~~--~d~~~~~~~~~~~~  232 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSI-GG----------E-VF--IDFTKEKDIVGAVL  232 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHT-TC----------C-EE--EETTTCSCHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHc-CC----------c-eE--EecCccHhHHHHHH
Confidence            677889999998  568777777765434799999988888877653 11          0 11  1322   111    


Q ss_pred             -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                       ...+.+|+|+.+-..        ...++.+.+.|++||.+++...
T Consensus       233 ~~~~~~~D~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          233 KATDGGAHGVINVSVS--------EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             HHHTSCEEEEEECSSC--------HHHHHHHTTSEEEEEEEEECCC
T ss_pred             HHhCCCCCEEEECCCc--------HHHHHHHHHHHhcCCEEEEEeC
Confidence             001269999865431        2467888999999999987643

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=90.64  E-value=0.6  Score=43.47  Aligned_cols=95  Identities=13%  Similarity=-0.101  Sum_probs=62.6

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CC-CCCC-----
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QDFT-----  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~-~~~~-----  225 (348)
                      +.++.+||-+|+|. |.++..+++. +...|+++|.|+..++.+++.-..            .++.. +. .++.     
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~i~~  256 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT------------ECLNPKDYDKPIYEVICE  256 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS------------EEECGGGCSSCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc------------EEEecccccchHHHHHHH
Confidence            67788999999875 7777777765 443699999999999988753211            11111 10 1110     


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE  269 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg-G~lii~~  269 (348)
                      ...+.+|+|+-.-.-        ...+..+.++|+++ |.+++..
T Consensus       257 ~t~gg~Dvvid~~g~--------~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          257 KTNGGVDYAVECAGR--------IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             HTTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             HhCCCCCEEEECCCC--------HHHHHHHHHHHhcCCCEEEEEc
Confidence            112479999854321        24677888999999 9998754

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=90.59  E-value=0.5  Score=43.54  Aligned_cols=95  Identities=14%  Similarity=0.066  Sum_probs=61.4

Q ss_pred             CCCCCcEEEEecc--ccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC----C-C
Q 018970          155 NNQHLVALDCGSG--IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----T-P  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG--~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~-~  226 (348)
                      +.++.+||-.|+|  .|..+..++... ..+|+++|.++..++.+++.-..            .+....-.++    . .
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~  235 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD------------YVINASMQDPLAEIRRI  235 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC------------EEecCCCccHHHHHHHH
Confidence            6678899999998  566666666553 33699999999999888653111            1111110111    0 1


Q ss_pred             CC-CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          227 ET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       227 ~~-~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .. +.+|+|+.+-.-        ...++.+.++|+|+|.+++..
T Consensus       236 ~~~~~~d~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          236 TESKGVDAVIDLNNS--------EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             TTTSCEEEEEESCCC--------HHHHTTGGGGEEEEEEEEECC
T ss_pred             hcCCCceEEEECCCC--------HHHHHHHHHHHhcCCEEEEEC
Confidence            11 479999864331        246778889999999998754

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=90.56  E-value=1.6  Score=40.19  Aligned_cols=94  Identities=16%  Similarity=0.046  Sum_probs=61.5

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------C
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~  226 (348)
                      + ++.+||-+|+|. |..+..++..... +|++++.+++.++.+++.-..            .+...+-.++.      .
T Consensus       166 ~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~------------~~~~~~~~~~~~~v~~~~  232 (348)
T 2d8a_A          166 I-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGAD------------YVINPFEEDVVKEVMDIT  232 (348)
T ss_dssp             C-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCS------------EEECTTTSCHHHHHHHHT
T ss_pred             C-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC------------EEECCCCcCHHHHHHHHc
Confidence            5 788999999974 7777777765433 699999999998888754211            11111111110      0


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ....+|+|+.+-..        ...++.+.++|+++|.+++..
T Consensus       233 ~g~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          233 DGNGVDVFLEFSGA--------PKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             TTSCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEc
Confidence            11369999864331        245678889999999988754

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=90.55  E-value=0.31  Score=44.80  Aligned_cols=88  Identities=16%  Similarity=0.139  Sum_probs=54.8

Q ss_pred             ceeEEEcCCCC-CC-CCCCceeEEeechhhhcCCh------------hhHHHHHHHHHHcCCCCcEEEEEeccc-CCCce
Q 018970          213 ATNFFCVPLQD-FT-PETGRYDVIWVQWCIGHLTD------------DDFVSFFKRAKVGLKPGGFFVLKENIA-RSGFV  277 (348)
Q Consensus       213 ~i~~~~~d~~~-~~-~~~~~fD~Ii~~~~l~~~~~------------~d~~~~l~~~~~~LkpgG~lii~~~~~-~~~~~  277 (348)
                      ...++++|..+ +. .++++||+|++........+            ..+...++.+.++|+|||.+++..... ..+..
T Consensus        14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~   93 (323)
T 1boo_A           14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVP   93 (323)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEE
T ss_pred             CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCc
Confidence            46777777654 22 34578999999766543210            146788999999999999998864321 00000


Q ss_pred             ecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          278 LDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       278 ~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      +     ........+.++++..||....
T Consensus        94 ~-----~~~~~~~~i~~~~~~~Gf~~~~  116 (323)
T 1boo_A           94 A-----RSIYNFRVLIRMIDEVGFFLAE  116 (323)
T ss_dssp             E-----ECCHHHHHHHHHHHTTCCEEEE
T ss_pred             c-----cccchHHHHHHHHHhCCCEEEE
Confidence            0     0011233456678899998765

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=90.38  E-value=0.86  Score=42.37  Aligned_cols=95  Identities=15%  Similarity=-0.011  Sum_probs=62.6

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CC-CCCC-----
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QDFT-----  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~-~~~~-----  225 (348)
                      +.++.+||-+|+|. |.++..+++. +...|+++|.|++.++.+++.-..            .++.. +. .++.     
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~~~v~~  255 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT------------ECINPQDFSKPIQEVLIE  255 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS------------EEECGGGCSSCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc------------eEeccccccccHHHHHHH
Confidence            67788999999875 7777777765 443699999999999988754211            11111 10 1110     


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE  269 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg-G~lii~~  269 (348)
                      ...+.+|+|+-.-.-        ...++.+.++|+++ |.+++..
T Consensus       256 ~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          256 MTDGGVDYSFECIGN--------VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             HTTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             HhCCCCCEEEECCCc--------HHHHHHHHHhhccCCcEEEEEe
Confidence            112369999854321        24678889999999 9998754

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=90.26  E-value=2.4  Score=46.31  Aligned_cols=149  Identities=17%  Similarity=0.094  Sum_probs=91.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC------------C-
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL------------Q-  222 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~------------~-  222 (348)
                      ...+++|+=||.|.++..+...++ ..+.++|+++.+++.-+.++..           ..++..|+            . 
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p~-----------~~~~~~DI~~l~~~~~~gdi~~  918 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPG-----------TTVFTEDCNVLLKLVMAGEVTN  918 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCTT-----------SEEECSCHHHHHHHHTTTCSBC
T ss_pred             CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC-----------CcEeeccHHHHhHhhhccchhh
Confidence            456899999999999999987786 5689999999999988888653           12222222            1 


Q ss_pred             ----CCCCCCCceeEEeechhhhcCCh---------hh----HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCce
Q 018970          223 ----DFTPETGRYDVIWVQWCIGHLTD---------DD----FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSI  285 (348)
Q Consensus       223 ----~~~~~~~~fD~Ii~~~~l~~~~~---------~d----~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~  285 (348)
                          .++. .+.+|+|+.......+.-         ++    +..-+-++.+.++|  .+++.||+..  + ......  
T Consensus       919 ~~~~~lp~-~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~lriv~~~rP--k~fv~ENV~g--l-ls~~~g--  990 (1330)
T 3av4_A          919 SLGQRLPQ-KGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRP--RFFLLENVRN--F-VSYRRS--  990 (1330)
T ss_dssp             SSCCBCCC-TTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHHHHHHHHCC--SEEEEEEEGG--G-GTTTTT--
T ss_pred             hhhhhccc-cCccceEEecCCCcccccccccccccccchhhHHHHHHHHHHHHhcC--cEEEEeccHH--H-hccCcc--
Confidence                1221 257899996433332211         11    11123344455678  4777787753  1 111111  


Q ss_pred             ecCHHHHHHHHHhcCCeEEEEee---cCCCCccceEEEEEEEe
Q 018970          286 TRSDFYFKELFSRCGLHIYKSKD---QKGLPEELFAVKMYALT  325 (348)
Q Consensus       286 ~~s~~~l~~l~~~aGf~~v~~~~---~~~~~~~l~~v~~~~l~  325 (348)
                       .....+.+.|++.||.+.....   ..+.|..--.+.+.+.+
T Consensus       991 -~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r 1032 (1330)
T 3av4_A          991 -MVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAA 1032 (1330)
T ss_dssp             -HHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEEEEC
T ss_pred             -HHHHHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEEEec
Confidence             1235677888999999766432   34677766666666654

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=90.21  E-value=0.91  Score=41.48  Aligned_cols=95  Identities=19%  Similarity=0.112  Sum_probs=62.6

Q ss_pred             cCCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------
Q 018970          154 RNNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------  225 (348)
Q Consensus       154 ~~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------  225 (348)
                      .+.++.+||-+|+  |.|..+..++.....+|++++.+++.++.+++.-..            .+...+-.++.      
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------------~~~~~~~~~~~~~~~~~  212 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAE------------YLINASKEDILRQVLKF  212 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc------------EEEeCCCchHHHHHHHH
Confidence            3678889999994  467788877766444799999999999888763211            11111111111      


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .....+|+|+-+-.-         ..++.+.++|+|||.+++..
T Consensus       213 ~~~~g~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          213 TNGKGVDASFDSVGK---------DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             TTTSCEEEEEECCGG---------GGHHHHHHHEEEEEEEEECC
T ss_pred             hCCCCceEEEECCCh---------HHHHHHHHHhccCCEEEEEc
Confidence            112469999865431         24667788999999998864

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=90.17  E-value=0.41  Score=44.05  Aligned_cols=95  Identities=15%  Similarity=-0.018  Sum_probs=64.6

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----C-
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-  226 (348)
                      +.++.+||-+|+|. |.++..+++.. ...|+++|.+++-++.+++.-..            .+...+ .++.     . 
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~------------~~i~~~-~~~~~~v~~~t  235 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD------------AAVKSG-AGAADAIRELT  235 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS------------EEEECS-TTHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC------------EEEcCC-CcHHHHHHHHh
Confidence            57788999999986 78888888654 55799999999999988764221            111111 1111     0 


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      ....+|+|+-.-.-        ...++.+.++|++||.+++...
T Consensus       236 ~g~g~d~v~d~~G~--------~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          236 GGQGATAVFDFVGA--------QSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             GGGCEEEEEESSCC--------HHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCeEEEECCCC--------HHHHHHHHHHHhcCCEEEEECC
Confidence            11269999863321        2467888999999999998643

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=90.16  E-value=1.6  Score=40.60  Aligned_cols=96  Identities=13%  Similarity=-0.076  Sum_probs=62.8

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CC-CCCC-----
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QDFT-----  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~-~~~~-----  225 (348)
                      +.++.+||-+|+|. |.++..+++.... .|+++|.+++.++.+++.-..            .++.. +. .++.     
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~v~~  260 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT------------DCLNPRELDKPVQDVITE  260 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------------EEECGGGCSSCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc------------EEEccccccchHHHHHHH
Confidence            67788999999875 7778888766443 799999999999988753211            11111 10 1110     


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCC-cEEEEEec
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN  270 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg-G~lii~~~  270 (348)
                      ...+.+|+|+-.-.-        ...++.+.++|++| |.+++...
T Consensus       261 ~~~~g~Dvvid~~G~--------~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          261 LTAGGVDYSLDCAGT--------AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             HHTSCBSEEEESSCC--------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HhCCCccEEEECCCC--------HHHHHHHHHHhhcCCCEEEEECC
Confidence            011369999853321        24678889999999 99987543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=90.16  E-value=0.75  Score=42.83  Aligned_cols=95  Identities=13%  Similarity=-0.056  Sum_probs=62.1

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CC-CCCC-----
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QDFT-----  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~-~~~~-----  225 (348)
                      +.++.+||-+|+|. |.++..+++.... .|+++|.++..++.+++.-..            .++.. +. .++.     
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~~~~~~  256 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT------------ECVNPQDYKKPIQEVLTE  256 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------------EEECGGGCSSCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc------------eEecccccchhHHHHHHH
Confidence            67788999999876 7777777765443 699999999999988753211            11111 10 1110     


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE  269 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg-G~lii~~  269 (348)
                      ...+.+|+|+-.-.-        ...++.+.++|++| |.+++..
T Consensus       257 ~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          257 MSNGGVDFSFEVIGR--------LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             HTTSCBSEEEECSCC--------HHHHHHHHHHBCTTTCEEEECS
T ss_pred             HhCCCCcEEEECCCC--------HHHHHHHHHHhhcCCcEEEEec
Confidence            112369999854321        24577888999999 9998754

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=90.07  E-value=0.95  Score=41.58  Aligned_cols=93  Identities=11%  Similarity=-0.001  Sum_probs=62.5

Q ss_pred             cCCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------
Q 018970          154 RNNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------  225 (348)
Q Consensus       154 ~~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------  225 (348)
                      .+.++.+||-+|+  |.|..+..++.....+|++++.++..++.+++. ..        .   .+  .|..+..      
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~-ga--------~---~~--~d~~~~~~~~~~~  228 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL-GA--------D---ET--VNYTHPDWPKEVR  228 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-TC--------S---EE--EETTSTTHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc-CC--------C---EE--EcCCcccHHHHHH
Confidence            3677889999998  578888888765444799999999999888753 21        0   11  1221111      


Q ss_pred             --CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 --PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 --~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                        .....+|+|+.+-. .        ..++.+.++|+++|.+++..
T Consensus       229 ~~~~~~~~d~vi~~~g-~--------~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          229 RLTGGKGADKVVDHTG-A--------LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             HHTTTTCEEEEEESSC-S--------SSHHHHHHHEEEEEEEEESS
T ss_pred             HHhCCCCceEEEECCC-H--------HHHHHHHHhhccCCEEEEEe
Confidence              11246999986544 1        24567788899999988754

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=89.89  E-value=1.1  Score=40.77  Aligned_cols=91  Identities=12%  Similarity=0.026  Sum_probs=60.4

Q ss_pred             cEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CCCCCceeEEee
Q 018970          160 VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIWV  236 (348)
Q Consensus       160 ~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~Ii~  236 (348)
                      +||-+|+  |.|..+..+++....+|++++.|++-++.+++.-.+           ..+...+.... ....+.+|+|+-
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~~~~~~~d~v~d  217 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGAN-----------RILSRDEFAESRPLEKQLWAGAID  217 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCS-----------EEEEGGGSSCCCSSCCCCEEEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC-----------EEEecCCHHHHHhhcCCCccEEEE
Confidence            4999997  468888888876444799999999999999774221           11111111111 112357999875


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +-     .  .  ..+..+.++|+|+|.+++...
T Consensus       218 ~~-----g--~--~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          218 TV-----G--D--KVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             SS-----C--H--HHHHHHHHTEEEEEEEEECCC
T ss_pred             CC-----C--c--HHHHHHHHHHhcCCEEEEEec
Confidence            32     2  1  278889999999999988643

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=89.84  E-value=0.86  Score=41.52  Aligned_cols=95  Identities=12%  Similarity=0.013  Sum_probs=62.4

Q ss_pred             CCCCCcEEEEe-c-cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------C
Q 018970          155 NNQHLVALDCG-S-GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P  226 (348)
Q Consensus       155 ~~~~~~VLDvG-c-G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~  226 (348)
                      +.++.+||-+| + |.|..+..++.....+|++++.+++.++.+++.-..            ......-.++.      .
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~------------~~~~~~~~~~~~~~~~~~  205 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAW------------ETIDYSHEDVAKRVLELT  205 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC------------EEEeCCCccHHHHHHHHh
Confidence            67888999999 3 458888877765333799999999999988764211            11111111110      1


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      ....+|+|+.+-.-         ..+..+.++|++||.+++...
T Consensus       206 ~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          206 DGKKCPVVYDGVGQ---------DTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             TTCCEEEEEESSCG---------GGHHHHHTTEEEEEEEEECCC
T ss_pred             CCCCceEEEECCCh---------HHHHHHHHHhcCCCEEEEEec
Confidence            12469999864331         245678889999999998643

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=89.82  E-value=1.9  Score=40.94  Aligned_cols=159  Identities=10%  Similarity=0.012  Sum_probs=90.1

Q ss_pred             CcEEEEeccccHHHHHHHHhC--CCc----EEEEcCCHHHHHHHHHHhCCCCCCCc------------CCCcc-------
Q 018970          159 LVALDCGSGIGRITKNLLIRY--FNE----VDLLEPVSHFLDAARESLAPENHMAP------------DMHKA-------  213 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~--~~~----v~~vD~S~~~l~~a~~~~~~~~~~~~------------~~~~~-------  213 (348)
                      .+|||+=||.|.+...+...+  +.-    |.++|+++.+++.-+.++........            +....       
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~i~   90 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYGIK   90 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHHHH
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccccc
Confidence            589999999999999887766  344    88899999999988888765311000            00000       


Q ss_pred             -------eeE---------EEcCCCCCCCC--CCceeEEeechhhhcCC---------h---h--h-HHHHHHHHHH---
Q 018970          214 -------TNF---------FCVPLQDFTPE--TGRYDVIWVQWCIGHLT---------D---D--D-FVSFFKRAKV---  257 (348)
Q Consensus       214 -------i~~---------~~~d~~~~~~~--~~~fD~Ii~~~~l~~~~---------~---~--d-~~~~l~~~~~---  257 (348)
                             -.+         ...|+.++...  ++.+|+++.......+.         +   .  . +..+++-+..   
T Consensus        91 ~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip~~vDll~ggpPCQ~fS~ag~~~g~~d~~~~r~~L~~~~~rii~~~~~  170 (403)
T 4dkj_A           91 KINNTIKASYLNYAKKHFNNLFDIKKVNKDNFPKNIDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLWEIERILEEIKN  170 (403)
T ss_dssp             HHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSCSSCSEEEECCCCTTTCTTSCCCCCCGGGCCSGGGHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHhhcccCCCcccchhhcCHhhCCCCCcEEEEeCCCCCHHHhCCCCCCCccccccchhHHHHHHHHHHhhh
Confidence                   000         23455544321  14579999754433221         1   0  1 2223333322   


Q ss_pred             ----cCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee---cCCCCccceEEEEEEEe
Q 018970          258 ----GLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD---QKGLPEELFAVKMYALT  325 (348)
Q Consensus       258 ----~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~---~~~~~~~l~~v~~~~l~  325 (348)
                          .++|  .+++.||+..-..      ......-..+.+.|++.||.+.....   ..+.|..--.+.+.+.+
T Consensus       171 k~~~~~~P--k~~l~ENV~gl~~------~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r  237 (403)
T 4dkj_A          171 SFSKEEMP--KYLLMENVKNLLS------HKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIR  237 (403)
T ss_dssp             HSCGGGSC--SEEEEEEEGGGGS------HHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEE
T ss_pred             hhccccCC--CEEEEecchhhhh------hccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEc
Confidence                1567  5677777643110      00011235678889999998766443   34567665566665654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=89.77  E-value=1  Score=42.04  Aligned_cols=96  Identities=15%  Similarity=-0.009  Sum_probs=63.3

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC--CCCCC-----
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP--LQDFT-----  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d--~~~~~-----  225 (348)
                      +.++.+||-+|+|. |.++..+++. +...|+++|.+++-++.+++.-..            .++...  -.++.     
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~i~~  258 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN------------EFVNPKDHDKPIQEVIVD  258 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC------------EEECGGGCSSCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc------------EEEccccCchhHHHHHHH
Confidence            67888999999975 7778877765 444799999999999988653211            111110  01110     


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCC-cEEEEEec
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN  270 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg-G~lii~~~  270 (348)
                      ...+.+|+|+-.-.        -...++.+.++|++| |.+++...
T Consensus       259 ~~~gg~D~vid~~g--------~~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          259 LTDGGVDYSFECIG--------NVSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             HTTSCBSEEEECSC--------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             hcCCCCCEEEECCC--------CHHHHHHHHHHhhccCCEEEEEcc
Confidence            11247999986432        124678889999997 99988643

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=89.74  E-value=1.8  Score=40.11  Aligned_cols=94  Identities=13%  Similarity=0.060  Sum_probs=62.0

Q ss_pred             CCCcEEEEe-cc-ccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEE---EcCCCCCCCCCCc
Q 018970          157 QHLVALDCG-SG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF---CVPLQDFTPETGR  230 (348)
Q Consensus       157 ~~~~VLDvG-cG-~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~---~~d~~~~~~~~~~  230 (348)
                      ++.+||-+| +| .|.++..+++. +..+|++++.+++-++.+++.-.+.         -++..   ...+.++  ..+.
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~---------vi~~~~~~~~~v~~~--~~~g  239 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHH---------VIDHSKPLAAEVAAL--GLGA  239 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSE---------EECTTSCHHHHHHTT--CSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCE---------EEeCCCCHHHHHHHh--cCCC
Confidence            678999998 55 48888888876 4557999999999999887632110         00000   0001111  2357


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|+|+-+-.        -...+..+.++|+|||.+++..
T Consensus       240 ~Dvvid~~g--------~~~~~~~~~~~l~~~G~iv~~g  270 (363)
T 4dvj_A          240 PAFVFSTTH--------TDKHAAEIADLIAPQGRFCLID  270 (363)
T ss_dssp             EEEEEECSC--------HHHHHHHHHHHSCTTCEEEECS
T ss_pred             ceEEEECCC--------chhhHHHHHHHhcCCCEEEEEC
Confidence            999986322        1246788899999999998863

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=89.34  E-value=0.97  Score=41.13  Aligned_cols=93  Identities=13%  Similarity=0.006  Sum_probs=61.0

Q ss_pred             CCCCCcEEEEe--ccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970          155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------  225 (348)
Q Consensus       155 ~~~~~~VLDvG--cG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------  225 (348)
                      +.++.+||-.|  +|.|..+..++.....+|++++.+++.++.+++.-..            ...  |..+..       
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~------------~~~--~~~~~~~~~~~~~  203 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW------------QVI--NYREEDLVERLKE  203 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS------------EEE--ETTTSCHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC------------EEE--ECCCccHHHHHHH
Confidence            67788999999  4567777776654333699999999888888763111            111  221111       


Q ss_pred             -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                       .....+|+|+.+-. .        ..++.+.++|++||.+++...
T Consensus       204 ~~~~~~~D~vi~~~g-~--------~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          204 ITGGKKVRVVYDSVG-R--------DTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             HTTTCCEEEEEECSC-G--------GGHHHHHHTEEEEEEEEECCC
T ss_pred             HhCCCCceEEEECCc-h--------HHHHHHHHHhcCCCEEEEEec
Confidence             11236999986543 1        346778889999999987643

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=89.32  E-value=0.74  Score=42.35  Aligned_cols=94  Identities=13%  Similarity=0.043  Sum_probs=63.1

Q ss_pred             cCCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------
Q 018970          154 RNNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------  225 (348)
Q Consensus       154 ~~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------  225 (348)
                      .+.++.+||-+|+  |.|..+..++.....+|++++.+++.++.+++.-..            .+...+ .++.      
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------------~v~~~~-~~~~~~v~~~  222 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGAD------------IVLPLE-EGWAKAVREA  222 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS------------EEEESS-TTHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc------------EEecCc-hhHHHHHHHH
Confidence            3678889999997  568888888766444799999999999888774221            112222 2211      


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .....+|+|+-+-.-         ..+..+.++|++||.+++..
T Consensus       223 ~~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          223 TGGAGVDMVVDPIGG---------PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             TTTSCEEEEEESCC-----------CHHHHHHTEEEEEEEEEC-
T ss_pred             hCCCCceEEEECCch---------hHHHHHHHhhcCCCEEEEEE
Confidence            112369999864331         24667888999999998854

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=89.03  E-value=0.62  Score=42.86  Aligned_cols=91  Identities=16%  Similarity=0.084  Sum_probs=59.7

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC--CC-----
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FT-----  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~-----  225 (348)
                      + ++.+||-+|+|. |..+..++..... .|++++.+++.++.+++. ..            .+  .|..+  +.     
T Consensus       163 ~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~------------~v--~~~~~~~~~~~~~~  226 (343)
T 2dq4_A          163 V-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD------------RL--VNPLEEDLLEVVRR  226 (343)
T ss_dssp             C-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS------------EE--ECTTTSCHHHHHHH
T ss_pred             C-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH------------hc--cCcCccCHHHHHHH
Confidence            5 788999999864 7777777765443 699999998887766543 21            01  12111  10     


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .....+|+|+-.-.-        ...++.+.++|+++|.+++..
T Consensus       227 ~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          227 VTGSGVEVLLEFSGN--------EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             HHSSCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred             hcCCCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence            002369999854321        245678889999999988754

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=88.98  E-value=1.5  Score=40.53  Aligned_cols=92  Identities=12%  Similarity=0.020  Sum_probs=60.7

Q ss_pred             CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970          155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------  225 (348)
Q Consensus       155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------  225 (348)
                      +.++.+||-.|+  |.|..+..++......|++++.+++.++.+++.-..            ..  .|..+..       
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------------~~--~d~~~~~~~~~~~~  233 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH------------EV--FNHREVNYIDKIKK  233 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EE--EETTSTTHHHHHHH
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCC------------EE--EeCCCchHHHHHHH
Confidence            677889999997  567777777765444799999999988877653111            11  1221111       


Q ss_pred             -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                       .....+|+|+.+-.-         ..+..+.++|++||.+++..
T Consensus       234 ~~~~~~~D~vi~~~G~---------~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          234 YVGEKGIDIIIEMLAN---------VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             HHCTTCEEEEEESCHH---------HHHHHHHHHEEEEEEEEECC
T ss_pred             HcCCCCcEEEEECCCh---------HHHHHHHHhccCCCEEEEEe
Confidence             012369999865431         24567789999999998754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=88.96  E-value=1.6  Score=40.88  Aligned_cols=115  Identities=11%  Similarity=0.037  Sum_probs=71.2

Q ss_pred             hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce
Q 018970          135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT  214 (348)
Q Consensus       135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i  214 (348)
                      ++...++|.+.+...      ..+.+||.|+.+.|.++..++...   ++.+.-|--.....+.++...++.    ...+
T Consensus        22 ~da~d~~ll~~~~~~------~~~~~~~~~~d~~gal~~~~~~~~---~~~~~ds~~~~~~~~~n~~~~~~~----~~~~   88 (375)
T 4dcm_A           22 WEAADEYLLQQLDDT------EIRGPVLILNDAFGALSCALAEHK---PYSIGDSYISELATRENLRLNGID----ESSV   88 (375)
T ss_dssp             CCHHHHHHHHTTTTC------CCCSCEEEECCSSSHHHHHTGGGC---CEEEESCHHHHHHHHHHHHHTTCC----GGGS
T ss_pred             cchHHHHHHHhhhhc------cCCCCEEEECCCCCHHHHhhccCC---ceEEEhHHHHHHHHHHHHHHcCCC----ccce
Confidence            445556666554432      244689999999999998886442   445543544444555555443331    1234


Q ss_pred             eEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       215 ~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ++... +++.   .+.||+|+....=+   ...+...|..+...|+||+.+++..
T Consensus        89 ~~~~~-~~~~---~~~~~~v~~~lpk~---~~~l~~~L~~l~~~l~~~~~i~~~g  136 (375)
T 4dcm_A           89 KFLDS-TADY---PQQPGVVLIKVPKT---LALLEQQLRALRKVVTSDTRIIAGA  136 (375)
T ss_dssp             EEEET-TSCC---CSSCSEEEEECCSC---HHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred             Eeccc-cccc---ccCCCEEEEEcCCC---HHHHHHHHHHHHhhCCCCCEEEEEe
Confidence            44432 2332   36799998754411   1357788999999999999987764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=88.89  E-value=2.8  Score=32.86  Aligned_cols=93  Identities=13%  Similarity=0.017  Sum_probs=56.0

Q ss_pred             CCcEEEEeccc-cHH-HHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCce
Q 018970          158 HLVALDCGSGI-GRI-TKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY  231 (348)
Q Consensus       158 ~~~VLDvGcG~-G~~-~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~f  231 (348)
                      ..+|+=+|||. |.. +..|...+. .|+++|.+++.++.+++.             .+.+..+|..+..    ..-..+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~-------------g~~~i~gd~~~~~~l~~a~i~~a   72 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRER-------------GVRAVLGNAANEEIMQLAHLECA   72 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-------------TCEEEESCTTSHHHHHHTTGGGC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHc-------------CCCEEECCCCCHHHHHhcCcccC
Confidence            35899999985 443 333333455 599999999998887652             2456677765532    112468


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |+|++...-     +.....+-...+.+.|+..++...
T Consensus        73 d~vi~~~~~-----~~~n~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           73 KWLILTIPN-----GYEAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             SEEEECCSC-----HHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             CEEEEECCC-----hHHHHHHHHHHHHHCCCCeEEEEE
Confidence            888864321     111222334556677887766644

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=88.79  E-value=0.77  Score=42.11  Aligned_cols=48  Identities=8%  Similarity=-0.071  Sum_probs=40.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE  203 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~  203 (348)
                      ..++..|||.=||+|..+......+. .++++|+++.+++.+++++...
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~  297 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN  297 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhc
Confidence            35778999999999999987665554 6999999999999999998753

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=88.63  E-value=1.2  Score=41.21  Aligned_cols=94  Identities=12%  Similarity=-0.001  Sum_probs=62.2

Q ss_pred             CCCCCcEEEEe--ccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CC
Q 018970          155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE  227 (348)
Q Consensus       155 ~~~~~~VLDvG--cG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~  227 (348)
                      +.++.+||-+|  .|.|..+..++.....+|++++.+++.++.+++. ..           ..+...+-.++.     ..
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~-Ga-----------~~~~~~~~~~~~~~~~~~~  228 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSL-GC-----------DRPINYKTEPVGTVLKQEY  228 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TC-----------SEEEETTTSCHHHHHHHHC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc-CC-----------cEEEecCChhHHHHHHHhc
Confidence            56788999999  4568888888766444799999999888888763 21           011111111110     01


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+.+|+|+-+-.       .  ..++.+.++|+++|.+++..
T Consensus       229 ~~g~D~vid~~g-------~--~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          229 PEGVDVVYESVG-------G--AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             TTCEEEEEECSC-------T--HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCC-------H--HHHHHHHHHHhcCCEEEEEe
Confidence            246999986533       1  36778889999999988764

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=88.54  E-value=0.63  Score=42.19  Aligned_cols=90  Identities=17%  Similarity=0.093  Sum_probs=59.6

Q ss_pred             cCCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          154 RNNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       154 ~~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      .+.++.+||-+|+|. |.++..+++....+|++++ |++-++.+++.-..            .+. .|.+.+   .+.+|
T Consensus       139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~------------~v~-~d~~~v---~~g~D  201 (315)
T 3goh_A          139 PLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVR------------HLY-REPSQV---TQKYF  201 (315)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEE------------EEE-SSGGGC---CSCEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCC------------EEE-cCHHHh---CCCcc
Confidence            477889999999974 7788888765433799999 99999988764211            111 132222   36799


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|+-+-.-         ..+..+.++|+|+|.+++..
T Consensus       202 vv~d~~g~---------~~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          202 AIFDAVNS---------QNAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             EEECC----------------TTGGGEEEEEEEEEEC
T ss_pred             EEEECCCc---------hhHHHHHHHhcCCCEEEEEe
Confidence            99864321         12256788999999998863

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=88.45  E-value=1.2  Score=41.05  Aligned_cols=93  Identities=8%  Similarity=-0.062  Sum_probs=61.4

Q ss_pred             CCCC--CcEEEEec--cccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----
Q 018970          155 NNQH--LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----  225 (348)
Q Consensus       155 ~~~~--~~VLDvGc--G~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----  225 (348)
                      +.++  .+||-.|+  |.|..+..++..... +|++++.+++.++.+++.+..        .   ..  .|..+-.    
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~--------~---~~--~d~~~~~~~~~  222 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGF--------D---AA--INYKKDNVAEQ  222 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCC--------S---EE--EETTTSCHHHH
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC--------c---eE--EecCchHHHHH
Confidence            5667  89999997  567777777765444 799999999888887764421        0   11  1222111    


Q ss_pred             ---CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 ---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 ---~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                         ...+.+|+|+.+-.       .  ..++.+.++|++||.+++..
T Consensus       223 ~~~~~~~~~d~vi~~~G-------~--~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          223 LRESCPAGVDVYFDNVG-------G--NISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             HHHHCTTCEEEEEESCC-------H--HHHHHHHHTEEEEEEEEECC
T ss_pred             HHHhcCCCCCEEEECCC-------H--HHHHHHHHHhccCcEEEEEC
Confidence               01126999986543       1  45778889999999998754

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=88.01  E-value=2.1  Score=39.43  Aligned_cols=96  Identities=17%  Similarity=0.038  Sum_probs=61.0

Q ss_pred             cCCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------
Q 018970          154 RNNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------  225 (348)
Q Consensus       154 ~~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------  225 (348)
                      .+.++.+||-.|+  |.|..+..++......|++++.+++.++.+++.-..            .....+-.++.      
T Consensus       159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~  226 (354)
T 2j8z_A          159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAA------------AGFNYKKEDFSEATLKF  226 (354)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCc------------EEEecCChHHHHHHHHH
Confidence            3677889999984  567777777765444799999999998888543111            11111111110      


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      .....+|+|+.+-.-         ..+..+.++|++||.+++...
T Consensus       227 ~~~~~~d~vi~~~G~---------~~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          227 TKGAGVNLILDCIGG---------SYWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             TTTSCEEEEEESSCG---------GGHHHHHHHEEEEEEEEECCC
T ss_pred             hcCCCceEEEECCCc---------hHHHHHHHhccCCCEEEEEec
Confidence            112369999865431         135667788999999988643

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=88.00  E-value=2.2  Score=38.91  Aligned_cols=89  Identities=13%  Similarity=0.020  Sum_probs=58.7

Q ss_pred             CcEEEEeccc--cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCCCCCceeEE
Q 018970          159 LVALDCGSGI--GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVI  234 (348)
Q Consensus       159 ~~VLDvGcG~--G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~I  234 (348)
                      .+|.=||+|.  |.++..+...+.. .|+++|.+++.++.+.+.-    .        +.-...++.+ ..   ...|+|
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G----~--------~~~~~~~~~~~~~---~~aDvV   98 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG----I--------IDEGTTSIAKVED---FSPDFV   98 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT----S--------CSEEESCTTGGGG---GCCSEE
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC----C--------cchhcCCHHHHhh---ccCCEE
Confidence            5899999985  3456666666663 6999999998888776431    1        1112234433 21   357999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      +.+-..     .....+++++...|+||.+++-
T Consensus        99 ilavp~-----~~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A           99 MLSSPV-----RTFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             EECSCG-----GGHHHHHHHHHHHSCTTCEEEE
T ss_pred             EEeCCH-----HHHHHHHHHHhhccCCCcEEEE
Confidence            875443     3456788899999999876653

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=87.67  E-value=3.2  Score=37.80  Aligned_cols=96  Identities=15%  Similarity=0.007  Sum_probs=61.0

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------C
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~  226 (348)
                      ..++.+||-.|+|. |.++..+++. +...++++|.+++-++.+++.=..            .++...-.+..      .
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~------------~~i~~~~~~~~~~~~~~~  225 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAM------------QTFNSSEMSAPQMQSVLR  225 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHG
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCe------------EEEeCCCCCHHHHHHhhc
Confidence            57788999999986 5566666655 444678999999999988764221            11111111110      0


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      ....+|+|+..-.        ....++.+.++|++||.+++...
T Consensus       226 ~~~g~d~v~d~~G--------~~~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          226 ELRFNQLILETAG--------VPQTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             GGCSSEEEEECSC--------SHHHHHHHHHHCCTTCEEEECCC
T ss_pred             ccCCccccccccc--------ccchhhhhhheecCCeEEEEEec
Confidence            1245788775322        12467788899999999988653

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=87.65  E-value=0.42  Score=44.39  Aligned_cols=96  Identities=18%  Similarity=0.036  Sum_probs=60.5

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCC-CCC--CCCCc
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DFT--PETGR  230 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~--~~~~~  230 (348)
                      +.++.+||-+|+|. |.++..+++....+|++++.|+..++.+++.-..            .+....-. ++.  .. +.
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~v~~~~~~~~~~~~~~-~~  243 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD------------HYIATLEEGDWGEKYF-DT  243 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS------------EEEEGGGTSCHHHHSC-SC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCC------------EEEcCcCchHHHHHhh-cC
Confidence            67788999999864 7777777765333699999999999988764211            11111101 110  11 47


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|+|+..-.-.  .    ...++.+.++|++||.+++..
T Consensus       244 ~D~vid~~g~~--~----~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          244 FDLIVVCASSL--T----DIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             EEEEEECCSCS--T----TCCTTTGGGGEEEEEEEEECC
T ss_pred             CCEEEECCCCC--c----HHHHHHHHHHhcCCCEEEEec
Confidence            99998654320  0    013445778899999998754

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=87.54  E-value=1.6  Score=39.87  Aligned_cols=92  Identities=14%  Similarity=0.066  Sum_probs=61.1

Q ss_pred             CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970          155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------  225 (348)
Q Consensus       155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------  225 (348)
                      +.++.+||-.|+  |.|..+..++......|++++.+++.++.+++. ..        .   ..  .|..+..       
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~-g~--------~---~~--~d~~~~~~~~~i~~  208 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL-GC--------H---HT--INYSTQDFAEVVRE  208 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-TC--------S---EE--EETTTSCHHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC--------C---EE--EECCCHHHHHHHHH
Confidence            677889999995  668877777765444799999999888888663 21        0   11  1222111       


Q ss_pred             -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                       .....+|+|+.+-.-         ..++.+.++|++||.+++..
T Consensus       209 ~~~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          209 ITGGKGVDVVYDSIGK---------DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             HHTTCCEEEEEECSCT---------TTHHHHHHTEEEEEEEEECC
T ss_pred             HhCCCCCeEEEECCcH---------HHHHHHHHhhccCCEEEEEe
Confidence             012369999865431         34677889999999988764

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=87.37  E-value=1.2  Score=41.60  Aligned_cols=96  Identities=15%  Similarity=0.033  Sum_probs=62.3

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC---CCCC----C
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQDF----T  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d---~~~~----~  225 (348)
                      +.++.+||-+|+|. |.++..+++... .+|++++.|++.++.+++.-..            .++...   -.++    .
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~~~~v~  260 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD------------LTLNRRETSVEERRKAIM  260 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCc------------EEEeccccCcchHHHHHH
Confidence            56788999999774 777888876654 4799999999999988753111            111111   0010    0


Q ss_pred             --CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          226 --PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       226 --~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                        .....+|+|+-+-.-        ...+..+.++|++||.+++...
T Consensus       261 ~~~~g~g~Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          261 DITHGRGADFILEATGD--------SRALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             HHTTTSCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred             HHhCCCCCcEEEECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence              011369999864321        1356778889999999987643

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=87.28  E-value=8.3  Score=29.43  Aligned_cols=90  Identities=9%  Similarity=0.010  Sum_probs=50.2

Q ss_pred             CcEEEEeccc-cHH-HHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCcee
Q 018970          159 LVALDCGSGI-GRI-TKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD  232 (348)
Q Consensus       159 ~~VLDvGcG~-G~~-~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD  232 (348)
                      .+|+=+|+|. |.. +..|.+.+. .|+++|.++..++..++..            .+.+...|..+..    .....+|
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~------------~~~~~~~d~~~~~~l~~~~~~~~d   71 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI------------DALVINGDCTKIKTLEDAGIEDAD   71 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------------SSEEEESCTTSHHHHHHTTTTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhc------------CcEEEEcCCCCHHHHHHcCcccCC
Confidence            5799999865 322 333333444 6999999998877665432            1334455543311    1124689


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      +|+..-.     ++.....+..+.+.+.++ .+++
T Consensus        72 ~vi~~~~-----~~~~~~~~~~~~~~~~~~-~ii~  100 (140)
T 1lss_A           72 MYIAVTG-----KEEVNLMSSLLAKSYGIN-KTIA  100 (140)
T ss_dssp             EEEECCS-----CHHHHHHHHHHHHHTTCC-CEEE
T ss_pred             EEEEeeC-----CchHHHHHHHHHHHcCCC-EEEE
Confidence            8887532     112334455556667775 4444

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=86.77  E-value=2.3  Score=40.70  Aligned_cols=95  Identities=12%  Similarity=0.056  Sum_probs=62.9

Q ss_pred             cCCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------
Q 018970          154 RNNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------  225 (348)
Q Consensus       154 ~~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------  225 (348)
                      .+.++.+||-+|+  |.|.++..++.....+|++++.++.-++.+++.-..            .++...-.++.      
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~d~~~~~~~~  292 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAE------------AIIDRNAEGYRFWKDEN  292 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCC------------EEEETTTTTCCSEEETT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCc------------EEEecCcCccccccccc
Confidence            3678889999997  458888888876555789999999999988764221            11111111110      


Q ss_pred             -----------------CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 -----------------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 -----------------~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                                       .....+|+|+-+-.       .  ..+..+.++|++||.+++..
T Consensus       293 ~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~--~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          293 TQDPKEWKRFGKRIRELTGGEDIDIVFEHPG-------R--ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             EECHHHHHHHHHHHHHHHTSCCEEEEEECSC-------H--HHHHHHHHHEEEEEEEEESC
T ss_pred             ccchHHHHHHHHHHHHHhCCCCCcEEEEcCC-------c--hhHHHHHHHhhCCcEEEEEe
Confidence                             01147999985322       1  46777888999999998854

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=86.60  E-value=0.75  Score=41.92  Aligned_cols=97  Identities=12%  Similarity=0.044  Sum_probs=59.1

Q ss_pred             CCCCC-cEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CCCCCc
Q 018970          155 NNQHL-VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGR  230 (348)
Q Consensus       155 ~~~~~-~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~  230 (348)
                      +.++. +||-+|+  |.|..+..++.....+|++++.+++-++.+++. ..        ..-++....+.... ....+.
T Consensus       146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~l-Ga--------~~~i~~~~~~~~~~~~~~~~~  216 (328)
T 1xa0_A          146 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL-GA--------KEVLAREDVMAERIRPLDKQR  216 (328)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT-TC--------SEEEECC---------CCSCC
T ss_pred             CCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-CC--------cEEEecCCcHHHHHHHhcCCc
Confidence            45554 8999997  568888888765444699999998888888653 21        00111111110000 111246


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|+|+-+-.-         ..+..+.++|++||.+++..
T Consensus       217 ~d~vid~~g~---------~~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          217 WAAAVDPVGG---------RTLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             EEEEEECSTT---------TTHHHHHHTEEEEEEEEECS
T ss_pred             ccEEEECCcH---------HHHHHHHHhhccCCEEEEEe
Confidence            9998864321         13567788999999998754

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=86.30  E-value=3.5  Score=37.61  Aligned_cols=98  Identities=17%  Similarity=-0.011  Sum_probs=60.5

Q ss_pred             CCCCCcEEEEecccc-HHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CC--CCCC
Q 018970          155 NNQHLVALDCGSGIG-RITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT--PETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G-~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~  229 (348)
                      ..++.+||-+|+|.+ .++..++.. +..+|+++|.+++-++.+++.-..         .-+++...|..+ +.  ....
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~---------~~i~~~~~~~~~~v~~~t~g~  231 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD---------VTINSGDVNPVDEIKKITGGL  231 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS---------EEEEC-CCCHHHHHHHHTTSS
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe---------EEEeCCCCCHHHHhhhhcCCC
Confidence            577889999999874 455555543 455899999999988888765432         112222112111 00  1113


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+|+++....        -...+..+.++|+++|.+++..
T Consensus       232 g~d~~~~~~~--------~~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          232 GVQSAIVCAV--------ARIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             CEEEEEECCS--------CHHHHHHHHHTEEEEEEEEECC
T ss_pred             CceEEEEecc--------CcchhheeheeecCCceEEEEe
Confidence            4666664322        1256778889999999988754

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=86.30  E-value=0.71  Score=42.95  Aligned_cols=94  Identities=16%  Similarity=0.123  Sum_probs=59.0

Q ss_pred             CC-CCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC---CCCCCC
Q 018970          155 NN-QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FTPETG  229 (348)
Q Consensus       155 ~~-~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~---~~~~~~  229 (348)
                      +. ++.+||-+|+|. |..+..++......|++++.++..++.+.+.+...           .+.  |..+   +....+
T Consensus       184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~-----------~v~--~~~~~~~~~~~~~  250 (366)
T 1yqd_A          184 LDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD-----------SFL--VSRDQEQMQAAAG  250 (366)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCS-----------EEE--ETTCHHHHHHTTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCc-----------eEE--eccCHHHHHHhhC
Confidence            45 778999999874 66777777654447999999998888877554321           111  1111   100014


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+|+|+.+-....        .++.+.++|+++|.++...
T Consensus       251 ~~D~vid~~g~~~--------~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          251 TLDGIIDTVSAVH--------PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             CEEEEEECCSSCC--------CSHHHHHHEEEEEEEEECC
T ss_pred             CCCEEEECCCcHH--------HHHHHHHHHhcCCEEEEEc
Confidence            6999986433211        2345667889999988754

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=86.21  E-value=1.4  Score=40.71  Aligned_cols=96  Identities=20%  Similarity=0.136  Sum_probs=62.6

Q ss_pred             cCCCCCcEEEEe--ccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----C
Q 018970          154 RNNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P  226 (348)
Q Consensus       154 ~~~~~~~VLDvG--cG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~  226 (348)
                      .+.++.+||-+|  .|.|..+..++.....+|++++.+++.++.+++.-..            .....+-.++.     .
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~~~~~~~~~~~~~~~~~  231 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAK------------RGINYRSEDFAAVIKAE  231 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC------------EEEeCCchHHHHHHHHH
Confidence            367888999995  3468888877766444799999999999988764221            11111111110     0


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      ..+.+|+|+.+-.-         ..+..+.+.|++||.+++...
T Consensus       232 ~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          232 TGQGVDIILDMIGA---------AYFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             HSSCEEEEEESCCG---------GGHHHHHHTEEEEEEEEECCC
T ss_pred             hCCCceEEEECCCH---------HHHHHHHHHhccCCEEEEEEe
Confidence            02469999864431         245677889999999988643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=85.88  E-value=8  Score=39.12  Aligned_cols=149  Identities=12%  Similarity=0.078  Sum_probs=88.7

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCC-------CcEEEEcCCHHHHHHHH-HHhCC-------------CCCCC-----cCC
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAAR-ESLAP-------------ENHMA-----PDM  210 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~-------~~v~~vD~S~~~l~~a~-~~~~~-------------~~~~~-----~~~  210 (348)
                      +...|+-+|||-=.....|.....       ..+..+|++-..+-..+ +.+..             .....     .-.
T Consensus       107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~  186 (695)
T 2zwa_A          107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT  186 (695)
T ss_dssp             SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred             CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence            456899999998777777764422       24555554433332222 22221             00000     000


Q ss_pred             CcceeEEEcCCCCCC----------C-CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC----CC
Q 018970          211 HKATNFFCVPLQDFT----------P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR----SG  275 (348)
Q Consensus       211 ~~~i~~~~~d~~~~~----------~-~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~----~~  275 (348)
                      ..+..++.+|+.+..          + ....--++++-.++.+++.++...+|+.+.+.  |+|.+++.+.+..    +.
T Consensus       187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~~~d~  264 (695)
T 2zwa_A          187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIPKGPFEP  264 (695)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCTTCTTSH
T ss_pred             CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecCCCCCCh
Confidence            135678888987731          1 23445677888999999999999999999864  6888888774432    11


Q ss_pred             c------ee---cCCCC--ceecCHHHHHHHHHhcCCeEEEEe
Q 018970          276 F------VL---DKEDR--SITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       276 ~------~~---d~~~~--~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      |      .+   ...-.  ....+.+...+.|.+.||..+...
T Consensus       265 f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~  307 (695)
T 2zwa_A          265 FSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVG  307 (695)
T ss_dssp             HHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCccee
Confidence            1      00   00011  112478889999999999876644

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=85.70  E-value=0.47  Score=44.02  Aligned_cols=96  Identities=13%  Similarity=0.069  Sum_probs=58.6

Q ss_pred             CC-CCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCCCCCCCCce
Q 018970          155 NN-QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRY  231 (348)
Q Consensus       155 ~~-~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~f  231 (348)
                      .. ++.+||-+|+|. |.++..+++....+|++++.+++.++.+++.+...           .+... +.+.+....+.+
T Consensus       177 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~~~~g~  245 (357)
T 2cf5_A          177 LKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGAD-----------DYVIGSDQAKMSELADSL  245 (357)
T ss_dssp             TTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCS-----------CEEETTCHHHHHHSTTTE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCc-----------eeeccccHHHHHHhcCCC
Confidence            45 788999999874 66777776553336999999988888776444321           11111 100000001369


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |+|+-.-.-.        ..++.+.++|+|||.+++..
T Consensus       246 D~vid~~g~~--------~~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          246 DYVIDTVPVH--------HALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             EEEEECCCSC--------CCSHHHHTTEEEEEEEEECS
T ss_pred             CEEEECCCCh--------HHHHHHHHHhccCCEEEEeC
Confidence            9998643311        12455678999999998754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=85.63  E-value=4  Score=33.42  Aligned_cols=93  Identities=15%  Similarity=-0.016  Sum_probs=54.0

Q ss_pred             CCcEEEEeccc-cHH-HHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----C-CCC
Q 018970          158 HLVALDCGSGI-GRI-TKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----P-ETG  229 (348)
Q Consensus       158 ~~~VLDvGcG~-G~~-~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~-~~~  229 (348)
                      +.+|+=+|||. |.. +..|... +. .|+++|.+++.++.+++.             .+.+..+|..+..    . .-.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~-------------g~~~~~gd~~~~~~l~~~~~~~  104 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSE-------------GRNVISGDATDPDFWERILDTG  104 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHT-------------TCCEEECCTTCHHHHHTBCSCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHC-------------CCCEEEcCCCCHHHHHhccCCC
Confidence            45899999875 433 3444445 55 499999999888776542             1334555554311    1 124


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+|+|+....     ++.....+-...+.+.|++.+++..
T Consensus       105 ~ad~vi~~~~-----~~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          105 HVKLVLLAMP-----HHQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             CCCEEEECCS-----SHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CCCEEEEeCC-----ChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            6898887432     1122223334555667777777653

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=85.59  E-value=1.3  Score=40.57  Aligned_cols=59  Identities=12%  Similarity=0.097  Sum_probs=44.6

Q ss_pred             HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCH---HHHHHHHHHhCCC
Q 018970          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS---HFLDAARESLAPE  203 (348)
Q Consensus       139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~---~~l~~a~~~~~~~  203 (348)
                      ..++..++...     ..++..|||.=||+|..+......+. ..+++|+++   ..++.+++++...
T Consensus       229 ~~l~~~~i~~~-----~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          229 AAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             HHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHh-----CCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHc
Confidence            45555555432     35778999999999999988776665 599999999   9999999998653

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=85.39  E-value=1.4  Score=40.60  Aligned_cols=90  Identities=17%  Similarity=0.069  Sum_probs=57.1

Q ss_pred             CcEEEEeccc-cHHH-HHHH-HhCCC-cEEEEcCCHH---HHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CC
Q 018970          159 LVALDCGSGI-GRIT-KNLL-IRYFN-EVDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PE  227 (348)
Q Consensus       159 ~~VLDvGcG~-G~~~-~~la-~~~~~-~v~~vD~S~~---~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~  227 (348)
                      .+||-+|+|. |.++ ..++ +.... .|++++.+++   -++.+++. ..            +.....-.++.    . 
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l-Ga------------~~v~~~~~~~~~i~~~-  239 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL-DA------------TYVDSRQTPVEDVPDV-  239 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT-TC------------EEEETTTSCGGGHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc-CC------------cccCCCccCHHHHHHh-
Confidence            8999999864 7777 7777 54333 4999999888   78888653 21            11111101110    1 


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      .+.+|+|+-.-.-        ...++.+.++|++||.+++...
T Consensus       240 ~gg~Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          240 YEQMDFIYEATGF--------PKHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             SCCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCEEEECCCC--------hHHHHHHHHHHhcCCEEEEEeC
Confidence            1369999854321        1357788899999999988643

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=85.19  E-value=0.22  Score=45.04  Aligned_cols=93  Identities=11%  Similarity=-0.051  Sum_probs=59.5

Q ss_pred             CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC-CCCCCCCCce
Q 018970          155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~f  231 (348)
                      +.++.+||-+|+  |.|..+..++.....+|++++.++..++.+++. ..        .   ......- .++...-+.+
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~-ga--------~---~~~~~~~~~~~~~~~~~~  190 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL-GA--------E---EAATYAEVPERAKAWGGL  190 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT-TC--------S---EEEEGGGHHHHHHHTTSE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc-CC--------C---EEEECCcchhHHHHhcCc
Confidence            467889999998  468888888765444799999999988888653 21        0   1111110 0110000469


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |+|+. -.       .  ..++.+.++|+++|.+++..
T Consensus       191 d~vid-~g-------~--~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          191 DLVLE-VR-------G--KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             EEEEE-CS-------C--TTHHHHHTTEEEEEEEEEC-
T ss_pred             eEEEE-CC-------H--HHHHHHHHhhccCCEEEEEe
Confidence            99986 32       1  24677889999999988753

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=84.92  E-value=4  Score=37.34  Aligned_cols=91  Identities=12%  Similarity=0.112  Sum_probs=59.6

Q ss_pred             CCCcEEEEe-cc-ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CCCC
Q 018970          157 QHLVALDCG-SG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG  229 (348)
Q Consensus       157 ~~~~VLDvG-cG-~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~  229 (348)
                      ++.+||-+| +| .|..+..++.....+|++++.+++-++.+++.-..            .+...+ +++.     ...+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~-~~~~~~~~~~~~~  216 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGAD------------IVLNHK-ESLLNQFKTQGIE  216 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCS------------EEECTT-SCHHHHHHHHTCC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc------------EEEECC-ccHHHHHHHhCCC
Confidence            678999994 54 47778877765444799999999999998874221            011110 1110     1124


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      .+|+|+-+-.        -...++.+.++|+++|.++..
T Consensus       217 g~Dvv~d~~g--------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          217 LVDYVFCTFN--------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             CEEEEEESSC--------HHHHHHHHHHHEEEEEEEEES
T ss_pred             CccEEEECCC--------chHHHHHHHHHhccCCEEEEE
Confidence            6999986322        134677888999999999764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=84.80  E-value=3.9  Score=35.67  Aligned_cols=106  Identities=13%  Similarity=0.078  Sum_probs=66.1

Q ss_pred             CCcEEEEecc----ccH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC------
Q 018970          158 HLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------  226 (348)
Q Consensus       158 ~~~VLDvGcG----~G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------  226 (348)
                      +.+||-.|++    .|. ++..|++++.. |.+++.+....+.+.+.....+      ..++.++.+|+.+...      
T Consensus         7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~   79 (266)
T 3oig_A            7 GRNIVVMGVANKRSIAWGIARSLHEAGAR-LIFTYAGERLEKSVHELAGTLD------RNDSIILPCDVTNDAEIETCFA   79 (266)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHTSS------SCCCEEEECCCSSSHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEecCchHHHHHHHHHHHhcC------CCCceEEeCCCCCHHHHHHHHH
Confidence            4578999976    343 56666766764 9999887766665555443321      1257888999887531      


Q ss_pred             ----CCCceeEEeechhhh----------cCChhhHH-----------HHHHHHHHcCCCCcEEEEEec
Q 018970          227 ----ETGRYDVIWVQWCIG----------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       227 ----~~~~fD~Ii~~~~l~----------~~~~~d~~-----------~~l~~~~~~LkpgG~lii~~~  270 (348)
                          ..+..|+++.+-.+.          ..+.+++.           .+++.+...|+++|.+++...
T Consensus        80 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           80 SIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             HHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence                013689888754432          23333333           255677778888898887643

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=84.76  E-value=2.3  Score=37.11  Aligned_cols=101  Identities=16%  Similarity=0.204  Sum_probs=65.0

Q ss_pred             CCcEEEEeccccH---HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--------
Q 018970          158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------  226 (348)
Q Consensus       158 ~~~VLDvGcG~G~---~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--------  226 (348)
                      +.++|-.|++.|.   ++..|++++. +|.+++.++..++...+.+.          .++.+..+|+.+...        
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~   76 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG----------PRVHALRSDIADLNEIAVLGAAA   76 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG----------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----------CcceEEEccCCCHHHHHHHHHHH
Confidence            4578888876552   4555666666 59999999888877766552          357888889877431        


Q ss_pred             --CCCceeEEeechhhh------cCChhhHHH-----------HHHHHHHcCCCCcEEEEEe
Q 018970          227 --ETGRYDVIWVQWCIG------HLTDDDFVS-----------FFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       227 --~~~~fD~Ii~~~~l~------~~~~~d~~~-----------~l~~~~~~LkpgG~lii~~  269 (348)
                        ..+..|+++.+-.+.      ..+.+++..           +++.+...++.+|.++...
T Consensus        77 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  138 (255)
T 4eso_A           77 GQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS  138 (255)
T ss_dssp             HHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence              014789998754332      223333332           3456666677788877754

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=84.14  E-value=1.1  Score=40.86  Aligned_cols=98  Identities=12%  Similarity=-0.008  Sum_probs=60.4

Q ss_pred             CCCCC-cEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCc
Q 018970          155 NNQHL-VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGR  230 (348)
Q Consensus       155 ~~~~~-~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~  230 (348)
                      +.++. +||-+||  |.|..+..++.....+|++++.+++-++.+++.-..         .-++....+..... ...+.
T Consensus       147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~---------~v~~~~~~~~~~~~~~~~~~  217 (330)
T 1tt7_A          147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS---------EVISREDVYDGTLKALSKQQ  217 (330)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS---------EEEEHHHHCSSCCCSSCCCC
T ss_pred             cCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc---------EEEECCCchHHHHHHhhcCC
Confidence            45554 8999997  457777777765333599999998888888763211         11111111111111 12246


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +|+|+-+-.       .  ..+..+.++|++||.+++...
T Consensus       218 ~d~vid~~g-------~--~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          218 WQGAVDPVG-------G--KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             EEEEEESCC-------T--HHHHHHHTTEEEEEEEEECCC
T ss_pred             ccEEEECCc-------H--HHHHHHHHhhcCCCEEEEEec
Confidence            999885432       1  257788899999999987643

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=83.35  E-value=3.3  Score=36.47  Aligned_cols=104  Identities=20%  Similarity=0.160  Sum_probs=64.0

Q ss_pred             CCcEEEEeccccH---HHHHHHHhCCCcEEEEcCC------------HHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCC
Q 018970          158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPV------------SHFLDAARESLAPENHMAPDMHKATNFFCVPLQ  222 (348)
Q Consensus       158 ~~~VLDvGcG~G~---~~~~la~~~~~~v~~vD~S------------~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~  222 (348)
                      +.+||-.|++.|.   ++..|++++.. |.++|.+            ...++.+...+...       ..++.++.+|+.
T Consensus        10 gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~D~~   81 (287)
T 3pxx_A           10 DKVVLVTGGARGQGRSHAVKLAEEGAD-IILFDICHDIETNEYPLATSRDLEEAGLEVEKT-------GRKAYTAEVDVR   81 (287)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT-------TSCEEEEECCTT
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEcccccccccccchhhhHHHHHHHHHHHhc-------CCceEEEEccCC
Confidence            4578888876552   45556666664 9999876            55665555444322       346788888987


Q ss_pred             CCCC----------CCCceeEEeechhhhc----CChhhHH-----------HHHHHHHHcCCCCcEEEEEe
Q 018970          223 DFTP----------ETGRYDVIWVQWCIGH----LTDDDFV-----------SFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       223 ~~~~----------~~~~fD~Ii~~~~l~~----~~~~d~~-----------~~l~~~~~~LkpgG~lii~~  269 (348)
                      +...          ..+..|+++.+-.+..    .+.+++.           .+++.+...|+.+|.++...
T Consensus        82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           82 DRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence            7431          0136899987654432    2333333           34566777777888877754

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=83.03  E-value=5.8  Score=34.68  Aligned_cols=131  Identities=9%  Similarity=0.015  Sum_probs=72.0

Q ss_pred             CcEEEEeccccHHHHHHHHh----CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          159 LVALDCGSGIGRITKNLLIR----YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~----~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      .+||=.||  |.++..++..    +. +|++++-++.-.+....             .++++..+|+.++.  ...+|+|
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------------~~~~~~~~D~~d~~--~~~~d~v   67 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA-------------SGAEPLLWPGEEPS--LDGVTHL   67 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH-------------TTEEEEESSSSCCC--CTTCCEE
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh-------------CCCeEEEecccccc--cCCCCEE
Confidence            57999995  7777666544    44 69999988765544332             24788889998866  3578999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEE-Eeccc--C-CCceecCCC-----CceecCHHHHHHHHHhc-CCeEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL-KENIA--R-SGFVLDKED-----RSITRSDFYFKELFSRC-GLHIY  304 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii-~~~~~--~-~~~~~d~~~-----~~~~~s~~~l~~l~~~a-Gf~~v  304 (348)
                      +.........+.....+++.+.+.-..-+.|++ +....  . .+..++...     ..+..+.-..++++... |+..+
T Consensus        68 i~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~  147 (286)
T 3ius_A           68 LISTAPDSGGDPVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAVPNLPLH  147 (286)
T ss_dssp             EECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTSCCCCCSHHHHHHHHHHHHHHHSTTCCEE
T ss_pred             EECCCccccccHHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEE
Confidence            876554433222234455555443112245554 33211  0 111112111     11223444557777776 77766


Q ss_pred             EEe
Q 018970          305 KSK  307 (348)
Q Consensus       305 ~~~  307 (348)
                      -..
T Consensus       148 ilR  150 (286)
T 3ius_A          148 VFR  150 (286)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            544

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=82.97  E-value=2.2  Score=39.45  Aligned_cols=88  Identities=19%  Similarity=0.098  Sum_probs=56.6

Q ss_pred             CCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCH---HHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCC----C
Q 018970          158 HLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVS---HFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTP----E  227 (348)
Q Consensus       158 ~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~---~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~----~  227 (348)
                      +.+||-+|+|. |..+..++.. +. .|++++.++   +-++.+++.-             .+..  | .+ +..    .
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~g-------------a~~v--~-~~~~~~~~~~~  243 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEETK-------------TNYY--N-SSNGYDKLKDS  243 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHHT-------------CEEE--E-CTTCSHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHhC-------------Ccee--c-hHHHHHHHHHh
Confidence            78999999853 5666666654 45 799999987   7777776531             1111  2 21 110    0


Q ss_pred             CCceeEEeechhhhcCChhhHHHHH-HHHHHcCCCCcEEEEEec
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l-~~~~~~LkpgG~lii~~~  270 (348)
                      .+.+|+|+.+-...        ..+ +.+.++|+++|.+++...
T Consensus       244 ~~~~d~vid~~g~~--------~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          244 VGKFDVIIDATGAD--------VNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             HCCEEEEEECCCCC--------THHHHHHGGGEEEEEEEEECSC
T ss_pred             CCCCCEEEECCCCh--------HHHHHHHHHHHhcCCEEEEEec
Confidence            14699998654311        245 788899999999887643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=82.29  E-value=7.5  Score=30.11  Aligned_cols=67  Identities=9%  Similarity=0.041  Sum_probs=42.6

Q ss_pred             CcEEEEeccc-cH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCcee
Q 018970          159 LVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD  232 (348)
Q Consensus       159 ~~VLDvGcG~-G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD  232 (348)
                      .+|+-+|||. |. ++..|.+.+. .|+++|.+++.++.+++.             ...+..+|..+..    .....+|
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~-------------~~~~~~gd~~~~~~l~~~~~~~~d   72 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE-------------GFDAVIADPTDESFYRSLDLEGVS   72 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-------------TCEEEECCTTCHHHHHHSCCTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC-------------CCcEEECCCCCHHHHHhCCcccCC
Confidence            4799999975 33 3334444455 599999999988877642             1456667766522    1124689


Q ss_pred             EEeechh
Q 018970          233 VIWVQWC  239 (348)
Q Consensus       233 ~Ii~~~~  239 (348)
                      +|+....
T Consensus        73 ~vi~~~~   79 (141)
T 3llv_A           73 AVLITGS   79 (141)
T ss_dssp             EEEECCS
T ss_pred             EEEEecC
Confidence            8886433

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=82.19  E-value=0.41  Score=45.00  Aligned_cols=101  Identities=12%  Similarity=0.033  Sum_probs=55.2

Q ss_pred             CCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ++.+|+=+|+|. |.....++......|+++|.++.-++.+++.+...          +.....+..++...-...|+|+
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~----------~~~~~~~~~~l~~~l~~aDvVi  236 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGR----------IHTRYSSAYELEGAVKRADLVI  236 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTS----------SEEEECCHHHHHHHHHHCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCe----------eEeccCCHHHHHHHHcCCCEEE
Confidence            467999999974 44444444433337999999999888887654321          1111101011110012579998


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+-......  ...-+.+.+.+.|||||.++...
T Consensus       237 ~~~~~p~~~--t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          237 GAVLVPGAK--APKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             ECCCCTTSC--CCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             ECCCcCCCC--CcceecHHHHhcCCCCcEEEEEe
Confidence            733211101  00112356677899999887653

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=82.16  E-value=0.43  Score=44.54  Aligned_cols=98  Identities=8%  Similarity=0.047  Sum_probs=54.8

Q ss_pred             CCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          158 HLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       158 ~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      +.+||=+|+|. |..+..++.. +. +|+++|.++.-++.+++....          .+.....+..++...-..+|+|+
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~DvVI  235 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS----------RVELLYSNSAEIETAVAEADLLI  235 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG----------GSEEEECCHHHHHHHHHTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc----------eeEeeeCCHHHHHHHHcCCCEEE
Confidence            47999999964 4444444444 45 799999999988888766432          11111111111110012589998


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      ..-......  .+.-+.+.+.+.|+|||.++..
T Consensus       236 ~~~~~~~~~--~~~li~~~~~~~~~~g~~ivdv  266 (361)
T 1pjc_A          236 GAVLVPGRR--APILVPASLVEQMRTGSVIVDV  266 (361)
T ss_dssp             ECCCCTTSS--CCCCBCHHHHTTSCTTCEEEET
T ss_pred             ECCCcCCCC--CCeecCHHHHhhCCCCCEEEEE
Confidence            644332211  0001134566788999988764

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=82.16  E-value=0.53  Score=44.08  Aligned_cols=100  Identities=10%  Similarity=0.029  Sum_probs=53.3

Q ss_pred             CCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ++.+|+-+|+|. |..+..++.....+|+++|.++..++.+.+....          .+.....+..++...-..+|+|+
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~----------~~~~~~~~~~~l~~~~~~~DvVi  234 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG----------RVITLTATEANIKKSVQHADLLI  234 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----------SEEEEECCHHHHHHHHHHCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc----------eEEEecCCHHHHHHHHhCCCEEE
Confidence            347899999963 4444444433333699999999888877664432          11111111111110013579998


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      .+-......  ...-+.+.+.+.|+|||.++..
T Consensus       235 ~~~g~~~~~--~~~li~~~~l~~mk~gg~iV~v  265 (369)
T 2eez_A          235 GAVLVPGAK--APKLVTRDMLSLMKEGAVIVDV  265 (369)
T ss_dssp             ECCC---------CCSCHHHHTTSCTTCEEEEC
T ss_pred             ECCCCCccc--cchhHHHHHHHhhcCCCEEEEE
Confidence            654432100  1111245677888999988764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=82.03  E-value=2.9  Score=39.84  Aligned_cols=98  Identities=14%  Similarity=0.040  Sum_probs=62.9

Q ss_pred             cCCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-------
Q 018970          154 RNNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-------  224 (348)
Q Consensus       154 ~~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------  224 (348)
                      .+.++.+||-.|+  |.|..+..++.....+|++++.++.-++.+++.-..         ..++....++.+.       
T Consensus       217 ~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~---------~~i~~~~~~~~~~~~~~~~~  287 (447)
T 4a0s_A          217 QMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCD---------LVINRAELGITDDIADDPRR  287 (447)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC---------CEEEHHHHTCCTTGGGCHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC---------EEEecccccccccccccccc
Confidence            4678899999997  457888888776555789999999999888653211         1111111122111       


Q ss_pred             --------C-----CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          225 --------T-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       225 --------~-----~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                              .     .....+|+|+-+-.       .  ..++.+.++|++||.+++..
T Consensus       288 ~~~~~~~~~~~v~~~~g~g~Dvvid~~G-------~--~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          288 VVETGRKLAKLVVEKAGREPDIVFEHTG-------R--VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCSEEEECSC-------H--HHHHHHHHHSCTTCEEEESC
T ss_pred             cchhhhHHHHHHHHHhCCCceEEEECCC-------c--hHHHHHHHHHhcCCEEEEEe
Confidence                    0     00246899886433       1  35677888999999998864

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=81.89  E-value=3.4  Score=37.79  Aligned_cols=92  Identities=13%  Similarity=0.080  Sum_probs=61.2

Q ss_pred             cCCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------
Q 018970          154 RNNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------  225 (348)
Q Consensus       154 ~~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------  225 (348)
                      .+.++.+||-+|+  |.|..+..++.....+|+++ .++..++.+++.-.             +... +-.++.      
T Consensus       147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa-------------~~i~-~~~~~~~~~~~~  211 (343)
T 3gaz_A          147 QVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGA-------------TPID-ASREPEDYAAEH  211 (343)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTS-------------EEEE-TTSCHHHHHHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCC-------------CEec-cCCCHHHHHHHH
Confidence            3678899999994  45888888876644479999 88888888876421             1111 111111      


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .....+|+|+-+-.       .  ..+..+.++|+++|.+++..
T Consensus       212 ~~~~g~D~vid~~g-------~--~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          212 TAGQGFDLVYDTLG-------G--PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             HTTSCEEEEEESSC-------T--HHHHHHHHHEEEEEEEEESC
T ss_pred             hcCCCceEEEECCC-------c--HHHHHHHHHHhcCCeEEEEc
Confidence            01246999986432       1  35777888999999998754

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=81.82  E-value=4.6  Score=36.04  Aligned_cols=104  Identities=13%  Similarity=0.045  Sum_probs=64.2

Q ss_pred             CCcEEEEecc----ccH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC------
Q 018970          158 HLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------  226 (348)
Q Consensus       158 ~~~VLDvGcG----~G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------  226 (348)
                      +.+||-.|++    .|. ++..|++.+.. |.+++.++...+.+++....        ...+.+..+|+.+...      
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~  101 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGAE-LAFTYQGDALKKRVEPLAEE--------LGAFVAGHCDVADAASIDAVFE  101 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTCE-EEEEECSHHHHHHHHHHHHH--------HTCEEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHh--------cCCceEEECCCCCHHHHHHHHH
Confidence            4678999976    333 55666666765 99999887655554443322        1246788889877431      


Q ss_pred             ----CCCceeEEeechhhh----------cCChhhHH-----------HHHHHHHHcCCCCcEEEEEec
Q 018970          227 ----ETGRYDVIWVQWCIG----------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       227 ----~~~~fD~Ii~~~~l~----------~~~~~d~~-----------~~l~~~~~~LkpgG~lii~~~  270 (348)
                          ..+..|++|.+-.+.          ..+.+++.           .+++.+...|+.+|.|+....
T Consensus       102 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          102 TLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             HHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             HHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence                114789998754432          23333332           345667777888888887643

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=81.24  E-value=5.7  Score=37.64  Aligned_cols=92  Identities=14%  Similarity=0.122  Sum_probs=58.9

Q ss_pred             CCcEEEEeccc-cHHHHH-HHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCce
Q 018970          158 HLVALDCGSGI-GRITKN-LLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY  231 (348)
Q Consensus       158 ~~~VLDvGcG~-G~~~~~-la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~f  231 (348)
                      ..+|+-||+|. |..... |...+. .|+++|.++..++.+++.             .+.++.+|..+..    ..-...
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~-------------g~~vi~GDat~~~~L~~agi~~A   69 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKF-------------GMKVFYGDATRMDLLESAGAAKA   69 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHT-------------TCCCEESCTTCHHHHHHTTTTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhC-------------CCeEEEcCCCCHHHHHhcCCCcc
Confidence            35799999975 443333 333455 599999999999988742             1445667776632    122468


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      |+|++...     ++.....+-...+.+.|...+++.
T Consensus        70 ~~viv~~~-----~~~~n~~i~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           70 EVLINAID-----DPQTNLQLTEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             SEEEECCS-----SHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CEEEECCC-----ChHHHHHHHHHHHHhCCCCeEEEE
Confidence            88876432     223344556667777888887774

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=81.00  E-value=9.4  Score=33.21  Aligned_cols=88  Identities=13%  Similarity=0.158  Sum_probs=55.1

Q ss_pred             CcEEEEeccc-cH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          159 LVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       159 ~~VLDvGcG~-G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      .+|.=||||. |. ++..++..+...|.++|.+++.++.+.+...            +.+ ..+..+..   ...|+|+.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g------------~~~-~~~~~~~~---~~~Dvvi~   74 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVE------------AEY-TTDLAEVN---PYAKLYIV   74 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTT------------CEE-ESCGGGSC---SCCSEEEE
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC------------Cce-eCCHHHHh---cCCCEEEE
Confidence            5799999985 33 4455555555448999999988877765532            111 22333322   35799887


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      .-.-.     ....+++.+...+++|..++-
T Consensus        75 av~~~-----~~~~v~~~l~~~~~~~~ivv~  100 (266)
T 3d1l_A           75 SLKDS-----AFAELLQGIVEGKREEALMVH  100 (266)
T ss_dssp             CCCHH-----HHHHHHHHHHTTCCTTCEEEE
T ss_pred             ecCHH-----HHHHHHHHHHhhcCCCcEEEE
Confidence            54322     345677888888888766554

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=80.56  E-value=0.8  Score=42.69  Aligned_cols=95  Identities=13%  Similarity=0.069  Sum_probs=57.3

Q ss_pred             CCCCCcEEEEe-cc-ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCC
Q 018970          155 NNQHLVALDCG-SG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG  229 (348)
Q Consensus       155 ~~~~~~VLDvG-cG-~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~  229 (348)
                      +.++.+||-+| +| .|..+..++......|++++ ++.-++.+++. ..           -.+...+-.++.   ....
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~l-Ga-----------~~v~~~~~~~~~~~~~~~~  247 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKL-GA-----------DDVIDYKSGSVEEQLKSLK  247 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHT-TC-----------SEEEETTSSCHHHHHHTSC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHc-CC-----------CEEEECCchHHHHHHhhcC
Confidence            56788999999 34 58888888766444688888 67777777543 21           011111111110   0114


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+|+|+-+-.-.       ...+..+.++|++||.+++..
T Consensus       248 g~D~vid~~g~~-------~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          248 PFDFILDNVGGS-------TETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             CBSEEEESSCTT-------HHHHGGGGBCSSSCCEEEESC
T ss_pred             CCCEEEECCCCh-------hhhhHHHHHhhcCCcEEEEeC
Confidence            689998543211       134566778999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d1xtpa_	254	c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa	2e-58
d2ex4a1	222	c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (	1e-39
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	6e-06
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	1e-05
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	5e-05
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	9e-05
d1mjfa_	276	c.66.1.17 (A:) Putative spermidine synthetase PF01	2e-04
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	2e-04
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	3e-04
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	5e-04
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	9e-04
d2o07a1	285	c.66.1.17 (A:16-300) Spermidine synthase {Human (H	0.001
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	0.001
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.002
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	0.002
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	0.002
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	0.002
d1ve3a1	226	c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A	0.003
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.003

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

 Score =  187 bits (475), Expect = 2e-58
 Identities = 101/264 (38%), Positives = 145/264 (54%), Gaps = 19/264 (7%)

Query: 62  KHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVD 121
           K   S  + +SG D++GK +++ +EMW+ ++  D    + +  WY + + YW  V A+V 
Sbjct: 8   KEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVS 65

Query: 122 GVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181
           GVLGG  +V++VDI+GS  F+  L       A        LDCG+GIGRITKNLL + + 
Sbjct: 66  GVLGGMDHVHDVDIEGSRNFIASLPGHGTSRA--------LDCGAGIGRITKNLLTKLYA 117

Query: 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241
             DLLEPV H L+        E            F    ++  T     YD+I +QW   
Sbjct: 118 TTDLLEPVKHMLE--------EAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169

Query: 242 HLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR-SGFVLDKEDRSITRSDFYFKELFSRCG 300
           +LTD DFV FFK  +  L P G+   KEN +    F++DKED S+TRSD ++K LF+  G
Sbjct: 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESG 229

Query: 301 LHIYKSKDQKGLPEELFAVKMYAL 324
           + + K   Q+  P +LF +KMYAL
Sbjct: 230 VRVVKEAFQEEWPTDLFPLKMYAL 253

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 1e-39
 Identities = 87/225 (38%), Positives = 130/225 (57%), Gaps = 9/225 (4%)

Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
           E + Q+Y +  +YW+ +  +VDG+LGG+G+++ +DI  S  FLQ  L +           
Sbjct: 6   EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGT---S 62

Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
            ALDCG+GIGRITK LL+  F EVD+++    FL         + ++  +  +  N+FC 
Sbjct: 63  CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQ------AKTYLGEEGKRVRNYFCC 116

Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLD 279
            LQDFTPE   YDVIW+QW IGHLTD     F +R K  L+P G  V+K+N+A+ G +LD
Sbjct: 117 GLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILD 176

Query: 280 KEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYAL 324
             D S+ R     + +    GL +   + Q+ LP+E++ V  +AL
Sbjct: 177 DVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFAL 221

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 44.2 bits (103), Expect = 6e-06
 Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 8/107 (7%)

Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
            LD G G GR +  L    ++            D    S+A    +            + 
Sbjct: 34  TLDLGCGNGRNSLYLAANGYDV--------TAWDKNPASMANLERIKAAEGLDNLQTDLV 85

Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
             +     G YD I     +  L            +   KPGG+ ++
Sbjct: 86  DLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLI 132

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 20/150 (13%), Positives = 34/150 (22%), Gaps = 8/150 (5%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
           L+ G G+      +     +E  ++E         R+    + H    +           
Sbjct: 58  LEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA--- 114

Query: 222 QDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL 278
              T   G +D I                F      A   LKPGG        +    + 
Sbjct: 115 --PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMK 172

Query: 279 DKEDRSITRSDFYFKELFSRCGLHIYKSKD 308
            K        +          G      + 
Sbjct: 173 SKYSDITIMFEETQVPALLEAGFRRENIRT 202

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 41.9 bits (97), Expect = 5e-05
 Identities = 23/160 (14%), Positives = 42/160 (26%), Gaps = 21/160 (13%)

Query: 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213
           + N+ +  LD  +G G +       +  +V   +     L               + +  
Sbjct: 14  KGNEEV--LDVATGGGHVAN-AFAPFVKKVVAFDLTEDIL--------KVARAFIEGNGH 62

Query: 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273
                V                V   I      +  SF   A   LK GG  +L +N A 
Sbjct: 63  QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP 122

Query: 274 SGFVLDKEDRSITRSDFY----------FKELFSRCGLHI 303
                D     + +   Y          + ++    G  +
Sbjct: 123 ENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFEL 162

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.1 bits (95), Expect = 9e-05
 Identities = 27/182 (14%), Positives = 55/182 (30%), Gaps = 10/182 (5%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL--APENHMAPDMHKATNFFCV 219
           LD   G G  +  L+      V  ++     L  A +      +             +  
Sbjct: 61  LDVACGTGVDSIMLV-EEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119

Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTD-----DDFVSFFKRAKVGLKPGGFFVLKENIARS 274
             +D     G   VI +     HL D      +     K     ++PGG  V+  +    
Sbjct: 120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI--DHRNY 177

Query: 275 GFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALTAEMPRRVSK 334
            ++L        ++ +Y  +L       +    ++  +    + V++     +     SK
Sbjct: 178 DYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSK 237

Query: 335 SR 336
            R
Sbjct: 238 FR 239

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 6/122 (4%)

Query: 151 PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM 210
               + +    L  G G G   + +L    +EV ++E     +  +++ +  +N +   M
Sbjct: 66  AMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAM 125

Query: 211 HKA----TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVS--FFKRAKVGLKPGGF 264
                           +F      +DVI               S  F++     L   G 
Sbjct: 126 LNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGI 185

Query: 265 FV 266
           +V
Sbjct: 186 YV 187

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
           LD G+G G         Y  E   ++     ++         +       +   F     
Sbjct: 21  LDIGAGAGHTAL-AFSPYVQECIGVDATKEMVEV------ASSFAQEKGVENVRFQQGTA 73

Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK 280
           +        +D+I  ++   H    D     +     LK  G F+L ++ A    VLD+
Sbjct: 74  ESLPFPDDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDE 130

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 28/204 (13%), Positives = 57/204 (27%), Gaps = 36/204 (17%)

Query: 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200
           +    L+  F           +D GSG           +F ++ + + +          L
Sbjct: 39  WKLRCLAQTFATGEV-SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWL 97

Query: 201 APENHMAPDMHKATNFFCV-------------------------------PLQDFTPETG 229
             E   A +    +   C+                               PL   +P   
Sbjct: 98  QEE-PGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPL 156

Query: 230 RYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKED-RSIT 286
             D +   +C+  ++ D   F          L+PGG  +L   +  S ++  +     + 
Sbjct: 157 PADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVP 216

Query: 287 RSDFYFKELFSRCGLHIYKSKDQK 310
            S+   +E   R G  +   +   
Sbjct: 217 VSEEEVREALVRSGYKVRDLRTYI 240

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 12/125 (9%)

Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFN-------EVDLLEPVSHFLDAARESLAPENH 205
                 +  L  G G G I   +L +            +++EP +  +   +E +A  ++
Sbjct: 36  GDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN 95

Query: 206 MAPDMHKATNFFCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG 262
           +               Q       E  ++D I +   + ++   D  +  K     L   
Sbjct: 96  LENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTN 153

Query: 263 GFFVL 267
              ++
Sbjct: 154 AKMLI 158

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 38.2 bits (88), Expect = 9e-04
 Identities = 23/174 (13%), Positives = 55/174 (31%), Gaps = 31/174 (17%)

Query: 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205
           + + +        LV  D G G GR  + ++ +Y        P+   ++           
Sbjct: 72  MLEIYTGFEGISTLV--DVGGGSGRNLELIISKY--------PLIKGINFDLP------Q 115

Query: 206 MAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265
           +  +    +    V   D      + D + ++    + +D+  + F       L P G  
Sbjct: 116 VIENAPPLSGIEHVG-GDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKV 174

Query: 266 VLKENIARSGFVLDKEDRSITRSDFY--------------FKELFSRCGLHIYK 305
           ++ E I        +E + ++  D                +++L    G   ++
Sbjct: 175 IIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 228

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 36/194 (18%), Positives = 59/194 (30%), Gaps = 35/194 (18%)

Query: 102 KTQWYREGISYWEGVEAS--VDGVL---------------GGFGNVNEVDIKGSEAFLQM 144
           +  W+RE  S W G   S  V+ +L                 +GNV  +D       +Q 
Sbjct: 2   REGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLD-----GVIQC 56

Query: 145 LLSDRFPNARNNQHLV---------ALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLD 194
              D F       +L           L  G G G + + ++       V   E     + 
Sbjct: 57  TERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQ 116

Query: 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC--IGHLTDDDFVSFF 252
            +++ L P   +     K T       +        +DVI       +G        S++
Sbjct: 117 VSKKFL-PGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYY 175

Query: 253 KRAKVGLKPGGFFV 266
           +  K  LK  G   
Sbjct: 176 QLMKTALKEDGVLC 189

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 24/169 (14%), Positives = 46/169 (27%), Gaps = 15/169 (8%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
           LD   G G +T+NL  ++ N                     +        +         
Sbjct: 42  LDLACGTGNLTENLCPKFKNTW-----AVDLSQEMLSEAENKFRSQGLKPR--LACQDIS 94

Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV--------LKENIAR 273
                         +      +  DD   +FK     LK GG F+        L + +  
Sbjct: 95  NLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGN 154

Query: 274 SGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMY 322
           + F  D ++      + +  +L S       +  +     +E    + Y
Sbjct: 155 NDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAY 203

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 16/122 (13%), Positives = 31/122 (25%), Gaps = 5/122 (4%)

Query: 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218
             +D GSG+G       +          E +    D                    N   
Sbjct: 219 TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 278

Query: 219 VPLQDFTPETGRYDVIW----VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274
             L+    +  R   +     V      L D+D     ++     K G   +  +++   
Sbjct: 279 FSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSL 338

Query: 275 GF 276
            +
Sbjct: 339 TY 340

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 26/169 (15%), Positives = 60/169 (35%), Gaps = 14/169 (8%)

Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190
           N  D+  ++ ++  L++  +   +    +  +D G G G +   L+              
Sbjct: 4   NTRDLYYNDDYVSFLVNTVWKITKP---VHIVDYGCGYGYLGLVLMPLLPEGSKY----- 55

Query: 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVS 250
             +D+    LA    +   +    + F            +YD+      + H+T  +  +
Sbjct: 56  TGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELNDKYDIAICHAFLLHMTTPE--T 112

Query: 251 FFKRAKVGLKPGGFFVLKE---NIARSGFVLDKEDRSITRSDFYFKELF 296
             ++    +K GG  +  E       + ++LD E +S        ++LF
Sbjct: 113 MLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLF 161

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 28/164 (17%), Positives = 45/164 (27%), Gaps = 31/164 (18%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
           L+ GS  G  T  L   +FN++  +E                   A    K    +    
Sbjct: 25  LELGSFKGDFTSRLQ-EHFNDITCVEASEEA-----------ISHAQGRLKDGITYIHSR 72

Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL-------------- 267
            +      RYD I +   + H+ D   +         L  GG   L              
Sbjct: 73  FEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDW-LAEGGRLFLVCPNANAVSRQIAV 131

Query: 268 KENIARSGFVLDKEDRSITRSDFY----FKELFSRCGLHIYKSK 307
           K  I      + + + +      Y     +   SR GL +    
Sbjct: 132 KMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 21/178 (11%)

Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
           LD G G G +   + +R  +    L  ++   + AR           D   A        
Sbjct: 86  LDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERAR-------RRFADAGLADRVTVAEG 138

Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKE 281
             F P     DV+ + + + + +D+D ++  +     L+PGG  ++ +     G   D+ 
Sbjct: 139 DFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRF 198

Query: 282 DRSIT------------RSDFYFKELFSRCGLHIYKSKDQKG--LPEELFAVKMYALT 325
             ++             R+     +L    GL +   +      LP +   ++  A++
Sbjct: 199 FSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAVS 256

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 13/64 (20%), Positives = 21/64 (32%)

Query: 204 NHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263
              A        F     +  + E   +D +     I H    +    FK  +  LKP G
Sbjct: 76  REYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG 135

Query: 264 FFVL 267
            F++
Sbjct: 136 KFIM 139

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 18/161 (11%), Positives = 43/161 (26%), Gaps = 5/161 (3%)

Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE----VDLLEPVSHFLD 194
                 L++      +     + +D GSG+G++   +      +    V+  +  + + +
Sbjct: 133 GETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAE 192

Query: 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKR 254
                           H                    +   + +        +     K 
Sbjct: 193 TMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVI-FVNNFAFGPEVDHQLKE 251

Query: 255 AKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKEL 295
               +K GG  V  +  A   F ++  + S   +     EL
Sbjct: 252 RFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVEL 292

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	100.0
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	100.0
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.89
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.89
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.89
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.86
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.86
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.85
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.85
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.85
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.84
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.84
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.84
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.84
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.83
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.83
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.83
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.81
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.8
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.8
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.79
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.79
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.78
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.78
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.77
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.75
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.72
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.72
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.69
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.66
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.65
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.65
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.64
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.61
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.56
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.54
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.53
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.5
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.5
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.5
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.5
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.48
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.45
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.45
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.45
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.43
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.43
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.43
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.42
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.41
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.35
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.33
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.33
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.3
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.26
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.24
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.21
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.18
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.18
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.16
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.14
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.12
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.09
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.07
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.04
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.02
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.01
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.94
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.93
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.91
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.89
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.83
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.83
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.76
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.71
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.64
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.58
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.57
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.51
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.49
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.48
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.47
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.43
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.42
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.41
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.39
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.35
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.33
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.32
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.13
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.1
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.0
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.91
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.89
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.84
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.71
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.6
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.59
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.54
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.48
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.84
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.67
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.62
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.59
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.32
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.3
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.24
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.11
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.06
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.04
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.95
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	95.86
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.51
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.46
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.39
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.37
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.35
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.35
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.08
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.93
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.8
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.75
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.42
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.4
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.25
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.24
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.12
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	92.29
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	92.23
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.92
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	91.38
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.27
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	90.94
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	90.39
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	90.15
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	89.92
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	89.37
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.14
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	87.47
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	86.78
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	86.1
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	84.11
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	83.73
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	83.7
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	83.16
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	81.81
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	81.35
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	81.12

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=2.1e-42  Score=313.41  Aligned_cols=242  Identities=42%  Similarity=0.777  Sum_probs=214.0

Q ss_pred             cccccccCCCCCCCcccCHHHHHHHhhcCCccchhhhhhHHHhhhhccccccccccccccCcccccccChhhhHHHHHHH
Q 018970           66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQML  145 (348)
Q Consensus        66 ~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~~~~~~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  145 (348)
                      +..+.+.|.|+.|+.|.+.+++|++++..+...  ....||..+.+||+.++++++++++||.+++..++..+..++..+
T Consensus        12 ~~~~~~~g~d~~g~~~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~~yW~~~~~t~~~mlgg~~~~~~~d~~~s~~fl~~l   89 (254)
T d1xtpa_          12 SRNLPISGRDTNGKTYRSTDEMWKAELTGDLYD--PEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASL   89 (254)
T ss_dssp             -CCCCCCEEETTSCEESCHHHHHHHHSCSCTTC--TTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTS
T ss_pred             cccccccccCCCCCEeccHHHHHHHHhcccccc--cchhhhhchhhhhhcCchhcccccCCccccchhhHHHHHHHHhhC
Confidence            566779999999999999999999998865443  556799999999999999999999999998888887777776644


Q ss_pred             HhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC
Q 018970          146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT  225 (348)
Q Consensus       146 l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  225 (348)
                      .        ..+..+|||||||+|+++..|+.+++..|+++|+|+.|++.|++++..        ..+++|.+.|+++++
T Consensus        90 ~--------~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~--------~~~~~~~~~d~~~~~  153 (254)
T d1xtpa_          90 P--------GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETAT  153 (254)
T ss_dssp             T--------TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCGGGCC
T ss_pred             C--------CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc--------cccceeEEccccccc
Confidence            3        456779999999999999999988887899999999999999999865        356899999999999


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC-CceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS-GFVLDKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~-~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      +++++||+|++.++++|++++++..+|++++++|||||.|+|.++.... .+..+..+..+.++.+++.++|+++||+++
T Consensus       154 ~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii  233 (254)
T d1xtpa_         154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV  233 (254)
T ss_dssp             CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred             cCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEE
Confidence            8888999999999999999888899999999999999999999876543 456677888888999999999999999999


Q ss_pred             EEeecCCCCccceEEEEEEEe
Q 018970          305 KSKDQKGLPEELFAVKMYALT  325 (348)
Q Consensus       305 ~~~~~~~~~~~l~~v~~~~l~  325 (348)
                      +...+.+||.++|||+||+|+
T Consensus       234 ~~~~q~~fP~~l~~V~~~~l~  254 (254)
T d1xtpa_         234 KEAFQEEWPTDLFPLKMYALK  254 (254)
T ss_dssp             EEEECTTCCTTSCCEEEEEEC
T ss_pred             EEEeeCCCCccceEEEEEEEC
Confidence            999999999999999999985

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-36  Score=264.02  Aligned_cols=216  Identities=41%  Similarity=0.819  Sum_probs=188.2

Q ss_pred             hhhhHHHhhhhccccccccccccccCcccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCC
Q 018970          101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF  180 (348)
Q Consensus       101 ~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~  180 (348)
                      ....||+++.+||++.+...++++++|+..+..++.....++...+.....   ..+..+|||||||+|.++..++.+++
T Consensus         7 ~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~   83 (222)
T d2ex4a1           7 DEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN---KTGTSCALDCGAGIGRITKRLLLPLF   83 (222)
T ss_dssp             CHHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTC
T ss_pred             hHHHHHHHHHHHHhCCCccccccccCccccchhhHHHHHHHHHHHHHhccC---CCCCCEEEEeccCCCHhhHHHHHhcC
Confidence            356899999999999988999999999888777777777777776654433   45667999999999999999887877


Q ss_pred             CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCC
Q 018970          181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK  260 (348)
Q Consensus       181 ~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lk  260 (348)
                      .+|+++|+|+.|++.|++++...+      ..+++|.++|++++++++++||+|++..++||++++++..++++++++||
T Consensus        84 ~~v~~vD~s~~~l~~ak~~~~~~~------~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk  157 (222)
T d2ex4a1          84 REVDMVDITEDFLVQAKTYLGEEG------KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLR  157 (222)
T ss_dssp             SEEEEEESCHHHHHHHHHHTGGGG------GGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE
T ss_pred             CEEEEeecCHHHhhcccccccccc------ccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcC
Confidence            789999999999999999986532      24679999999999887889999999999999998788899999999999


Q ss_pred             CCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCccceEEEEEEEe
Q 018970          261 PGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALT  325 (348)
Q Consensus       261 pgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~~l~~v~~~~l~  325 (348)
                      |||.+++.++.......++..+..+.++.+++.++|+++||++++...+.+||.++||++||+||
T Consensus       158 ~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~~fP~~~~~v~~~al~  222 (222)
T d2ex4a1         158 PNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR  222 (222)
T ss_dssp             EEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCCTTSCEEEEEEEC
T ss_pred             CcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEeCCCCcchhEEEEEEeC
Confidence            99999999988777777777777888899999999999999999999999999999999999996

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.89  E-value=1.6e-23  Score=184.81  Aligned_cols=144  Identities=15%  Similarity=0.198  Sum_probs=117.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ++++.+|||||||+|.++..++..+. +|+++|+|+.|++.|++++...++      .+++|.++|++++++++++||+|
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~------~~i~~~~~d~~~l~~~~~~fD~v   85 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDAEQMPFTDERFHIV   85 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC-CCCSCTTCEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccc------ccccccccccccccccccccccc
Confidence            67889999999999999999987765 599999999999999988765432      57899999999999888999999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce----e------cCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV----L------DKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~----~------d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      ++..++||++  |+..++++++++|||||++++.+........    .      ....+...++..++.++++++||+++
T Consensus        86 ~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  163 (231)
T d1vl5a_          86 TCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELE  163 (231)
T ss_dssp             EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEE
T ss_pred             cccccccccC--CHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEE
Confidence            9999999999  7889999999999999999998754322210    0      11122233578899999999999987


Q ss_pred             EEe
Q 018970          305 KSK  307 (348)
Q Consensus       305 ~~~  307 (348)
                      +..
T Consensus       164 ~~~  166 (231)
T d1vl5a_         164 ELH  166 (231)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            644

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.89  E-value=2.5e-23  Score=189.71  Aligned_cols=149  Identities=20%  Similarity=0.267  Sum_probs=122.0

Q ss_pred             cCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       154 ~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      .+.++.+|||||||+|.++..|+++....|+|+|+|+.|++.|+++....|+     ..+++|.++|+.++++++++||+
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl-----~~~v~~~~~d~~~l~~~~~sfD~  138 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSFLEIPCEDNSYDF  138 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCTTSCSSCTTCEEE
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccc-----cccccccccccccccccccccch
Confidence            3778899999999999999999877544699999999999999998766544     46799999999999988899999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce-------ecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV-------LDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~-------~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      |++..+++|++  ++..+++++.++|||||.|++.+........       .+........+.+.+.++++++||+.+..
T Consensus       139 V~~~~~l~h~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~  216 (282)
T d2o57a1         139 IWSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT  216 (282)
T ss_dssp             EEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred             hhccchhhhcc--CHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEE
Confidence            99999999999  7889999999999999999998755433221       01111112247888999999999998886


Q ss_pred             eec
Q 018970          307 KDQ  309 (348)
Q Consensus       307 ~~~  309 (348)
                      ...
T Consensus       217 ~d~  219 (282)
T d2o57a1         217 FSR  219 (282)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            643

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=7.1e-23  Score=181.56  Aligned_cols=144  Identities=17%  Similarity=0.176  Sum_probs=118.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ++++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...++      .++.+.++|++++++++++||+|
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~v   86 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGTAESLPFPDDSFDII   86 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECBTTBCCSCTTCEEEE
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccc------cccccccccccccccccccccee
Confidence            78999999999999999999987765 599999999999999998765432      46999999999999888999999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce----------ecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV----------LDKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~----------~d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      +|..+++|++  |+..+++++.++|||||.+++.+........          .....+...++...+..+++.+||.+.
T Consensus        87 ~~~~~l~~~~--d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~  164 (234)
T d1xxla_          87 TCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQ  164 (234)
T ss_dssp             EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEE
T ss_pred             eeeceeeccc--CHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCcee
Confidence            9999999999  7889999999999999999998754332210          011122223578889999999999877


Q ss_pred             EEe
Q 018970          305 KSK  307 (348)
Q Consensus       305 ~~~  307 (348)
                      ...
T Consensus       165 ~~~  167 (234)
T d1xxla_         165 DIQ  167 (234)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=6.3e-22  Score=176.64  Aligned_cols=116  Identities=22%  Similarity=0.328  Sum_probs=97.9

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV  219 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~  219 (348)
                      .++..++....    ..+..+|||||||+|.++..|++.+. +|+|+|+|+.|++.|++++...       ..++++.++
T Consensus        28 ~~~~~~~~~~~----~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~-------~~~i~~~~~   95 (251)
T d1wzna1          28 DFVEEIFKEDA----KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKER-------NLKIEFLQG   95 (251)
T ss_dssp             HHHHHHHHHTC----SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCCEEEES
T ss_pred             HHHHHHHHHhc----CCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccc-------cccchheeh
Confidence            45555554432    35667899999999999999998877 5999999999999999987653       336999999


Q ss_pred             CCCCCCCCCCceeEEeec-hhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          220 PLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       220 d~~~~~~~~~~fD~Ii~~-~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      |+++++++ ++||+|++. .+++|++.++...+|++++++|||||++++.
T Consensus        96 d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1          96 DVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             CGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence            99999877 689999986 6888988778999999999999999999884

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.2e-21  Score=174.83  Aligned_cols=145  Identities=16%  Similarity=0.057  Sum_probs=117.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.++..++++....|+|+|+|+.|++.|+++....|+     ..+++|..+|+.++. .+++||+|
T Consensus        31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl-----~~~v~~~~~d~~~~~-~~~~fD~v  104 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----SERVHFIHNDAAGYV-ANEKCDVA  104 (245)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCCTTCC-CSSCEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhc-----cccchhhhhHHhhcc-ccCceeEE
Confidence            788899999999999999999877555799999999999999998876654     457999999999985 45899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-------eecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-------VLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-------~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      ++..+++|++  |+..+++++.++|||||++++.+.......       ........-..+...+..+++++||+++...
T Consensus       105 ~~~~~~~~~~--d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v~~~  182 (245)
T d1nkva_         105 ACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMV  182 (245)
T ss_dssp             EEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred             EEEehhhccC--CHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEEEEE
Confidence            9999999999  778999999999999999999875432211       0111111122477889999999999987643

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=8.4e-22  Score=171.17  Aligned_cols=133  Identities=17%  Similarity=0.132  Sum_probs=108.0

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .+..+|||||||+|.++..+.     .++|+|+|+.|++.|+++             ++.+.+.|+++++.++++||+|+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-------------~~~~~~~d~~~l~~~~~~fD~I~   96 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFDFAL   96 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEEEEE
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-------------ccccccccccccccccccccccc
Confidence            345689999999999988763     478999999999999864             37899999999998889999999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc---------eecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF---------VLDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~---------~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      +..+|+|++  ++..+++++.++|+|||.+++.........         ......+...++.+++.++|+++||++++.
T Consensus        97 ~~~~l~h~~--d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v  174 (208)
T d1vlma_          97 MVTTICFVD--DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV  174 (208)
T ss_dssp             EESCGGGSS--CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             ccccccccc--ccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEE
Confidence            999999998  788999999999999999999875443211         001112223368999999999999998875


Q ss_pred             ee
Q 018970          307 KD  308 (348)
Q Consensus       307 ~~  308 (348)
                      ..
T Consensus       175 ~~  176 (208)
T d1vlma_         175 VQ  176 (208)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=5.9e-21  Score=173.70  Aligned_cols=146  Identities=16%  Similarity=0.185  Sum_probs=118.0

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ++++.+|||||||+|.++..++++...+|+|+|+|+.+++.|++++.+.++     ...+.+...|..+++   ++||.|
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l-----~~~~~~~~~d~~~~~---~~fD~i  121 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----NRSRQVLLQGWEDFA---EPVDRI  121 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCGGGCC---CCCSEE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhcc-----ccchhhhhhhhhhhc---cchhhh
Confidence            889999999999999999998877555799999999999999999887665     455777777766653   789999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee--------------------cCCCCceecCHHHHHH
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL--------------------DKEDRSITRSDFYFKE  294 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~--------------------d~~~~~~~~s~~~l~~  294 (348)
                      ++..+++|+.+++...+++++.++|||||.+++........+..                    -........|..++.+
T Consensus       122 ~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~~  201 (280)
T d2fk8a1         122 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVE  201 (280)
T ss_dssp             EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHH
T ss_pred             hHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHhhhh
Confidence            99999999998888999999999999999999976443222100                    0122334468889999


Q ss_pred             HHHhcCCeEEEEee
Q 018970          295 LFSRCGLHIYKSKD  308 (348)
Q Consensus       295 l~~~aGf~~v~~~~  308 (348)
                      +++++||++.....
T Consensus       202 ~~e~aGf~v~~~~~  215 (280)
T d2fk8a1         202 HGEKAGFTVPEPLS  215 (280)
T ss_dssp             HHHHTTCBCCCCEE
T ss_pred             hHHhhccccceeee
Confidence            99999999887654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=1.8e-21  Score=170.36  Aligned_cols=118  Identities=22%  Similarity=0.238  Sum_probs=100.1

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV  219 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~  219 (348)
                      ..+..++.+.     +++..+|||||||+|.++..+++.+. .|+|+|+|+.|++.|++++...       ...+.+.+.
T Consensus        25 ~~~~~~~~~~-----l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~-------~~~~~~~~~   91 (226)
T d1ve3a1          25 ETLEPLLMKY-----MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSR-------ESNVEFIVG   91 (226)
T ss_dssp             HHHHHHHHHS-----CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCCEEEEC
T ss_pred             HHHHHHHHHh-----cCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccc-------ccccccccc
Confidence            4445555443     34667999999999999999997766 5999999999999999887543       345788899


Q ss_pred             CCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       220 d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      |+.+++.++++||+|++..+++|+++.++..+++++.++|||||.+++...
T Consensus        92 d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1          92 DARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             CTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            999999888999999999999999988899999999999999999998753

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=2.7e-20  Score=169.43  Aligned_cols=165  Identities=15%  Similarity=0.125  Sum_probs=128.7

Q ss_pred             ChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcc
Q 018970          134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA  213 (348)
Q Consensus       134 ~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~  213 (348)
                      ++........+.+.+++.   ++++.+|||||||+|.++.++++....+|+|+++|+.+++.|++++...++     ..+
T Consensus        42 tL~eAQ~~k~~~~~~~l~---l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~-----~~~  113 (285)
T d1kpga_          42 TLQEAQIAKIDLALGKLG---LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----LRS  113 (285)
T ss_dssp             CHHHHHHHHHHHHHTTTT---CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----CSC
T ss_pred             CHHHHHHHHHHHHHHHcC---CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhh-----hhh
Confidence            344444444555555555   899999999999999999999887656899999999999999999877665     467


Q ss_pred             eeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce----------------
Q 018970          214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV----------------  277 (348)
Q Consensus       214 i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~----------------  277 (348)
                      +++...|..+++   ++||.|++.++++|+...+...+++++.++|||||.+++.......+..                
T Consensus       114 v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  190 (285)
T d1kpga_         114 KRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFL  190 (285)
T ss_dssp             EEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHH
T ss_pred             hHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchh
Confidence            899999987764   6899999999999998778889999999999999999986543211100                


Q ss_pred             --e--cCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          278 --L--DKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       278 --~--d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                        +  .........+...+..+++++||++.+....
T Consensus       191 ~fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~~~~~  226 (285)
T d1kpga_         191 KFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSL  226 (285)
T ss_dssp             HHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred             hHHHHHhccCCCCCChhhHHHHHHHhchhhcccccc
Confidence              0  0012233457888999999999999887653

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.84  E-value=1.1e-20  Score=169.43  Aligned_cols=163  Identities=20%  Similarity=0.226  Sum_probs=127.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..+..+|||||||+|.++..++++++. .++++|+ +.+++.+++++...++     ..++++..+|+.+..  +.+||+
T Consensus        78 ~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~rv~~~~~D~~~~~--~~~~D~  149 (253)
T d1tw3a2          78 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL-----SDRVDVVEGDFFEPL--PRKADA  149 (253)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC-----TTTEEEEECCTTSCC--SSCEEE
T ss_pred             CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc-----ccchhhccccchhhc--ccchhh
Confidence            455679999999999999999988876 7889997 6799999998876554     467999999986633  257999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce-------ecC----CCCceecCHHHHHHHHHhcCCe
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV-------LDK----EDRSITRSDFYFKELFSRCGLH  302 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~-------~d~----~~~~~~~s~~~l~~l~~~aGf~  302 (348)
                      |++.+++||+++++...+|++++++|||||.|+|.+........       ++.    ......+|.++|.++++++||+
T Consensus       150 v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~  229 (253)
T d1tw3a2         150 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV  229 (253)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred             eeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCe
Confidence            99999999999888889999999999999999998754322110       010    0011226889999999999999


Q ss_pred             EEEEeecCCCCccceEEEEEEEee
Q 018970          303 IYKSKDQKGLPEELFAVKMYALTA  326 (348)
Q Consensus       303 ~v~~~~~~~~~~~l~~v~~~~l~~  326 (348)
                      +++..... .|...|...++++.|
T Consensus       230 ~~~v~~~~-~p~~~~~~~li~~~P  252 (253)
T d1tw3a2         230 VEEVRQLP-SPTIPYDLSLLVLAP  252 (253)
T ss_dssp             EEEEEEEE-CSSSSCEEEEEEEEE
T ss_pred             EEEEEECC-CCCCCccEEEEEEec
Confidence            98876644 355567888888876

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.84  E-value=1.3e-20  Score=165.89  Aligned_cols=148  Identities=15%  Similarity=0.175  Sum_probs=114.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC--CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY--FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~--~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  231 (348)
                      .+++.+|||||||+|..+..++...  +. +|+|+|+|+.|++.|++++...+.     ..++.+...|+.+++.  +.+
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~-----~~~~~~~~~d~~~~~~--~~~  109 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRHVEI--KNA  109 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC-----SSCEEEECSCTTTCCC--CSE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc-----cchhhhccchhhcccc--ccc
Confidence            3567899999999999999998643  22 799999999999999998765432     3457777778776653  579


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce-----------------ecCCC----------Cc
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV-----------------LDKED----------RS  284 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~-----------------~d~~~----------~~  284 (348)
                      |+|+++.++||++.+++..++++++++|||||.|++.+........                 +....          ..
T Consensus       110 d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (225)
T d1im8a_         110 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVM  189 (225)
T ss_dssp             EEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHC
T ss_pred             eeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence            9999999999999889999999999999999999998754322110                 00000          01


Q ss_pred             eecCHHHHHHHHHhcCCeEEEEeec
Q 018970          285 ITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       285 ~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      ..++.+++.++++++||+.++...+
T Consensus       190 ~~~s~~~~~~~L~~aGF~~v~~~~~  214 (225)
T d1im8a_         190 RTDSIETHKVRLKNVGFSQVELWFQ  214 (225)
T ss_dssp             CCCCHHHHHHHHHHHTCSEEEEEEE
T ss_pred             CCCCHHHHHHHHHHcCCCceEEeee
Confidence            2257889999999999998886543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.84  E-value=4.6e-21  Score=170.93  Aligned_cols=104  Identities=21%  Similarity=0.346  Sum_probs=89.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...       +.++++.++|+.+++.+ ++||+|+
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~-------~~~v~~~~~d~~~~~~~-~~fD~i~  106 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQ-------GLKPRLACQDISNLNIN-RKFDLIT  106 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHT-------TCCCEEECCCGGGCCCS-CCEEEEE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhcccccccc-------Cccceeeccchhhhccc-ccccccc
Confidence            3457899999999999999998877 5999999999999999987653       34689999999998765 6899999


Q ss_pred             ec-hhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEE
Q 018970          236 VQ-WCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       236 ~~-~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      |. .+++|+.. +++..++++++++|||||.|++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         107 CCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             ECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            75 68888854 78899999999999999999974

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.83  E-value=2e-20  Score=161.53  Aligned_cols=141  Identities=18%  Similarity=0.212  Sum_probs=109.8

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      ++.+|||||||+|..+..++++++. |+++|+|+.|++.++++....++      .++.+...|+.++.++ ++||+|++
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~~-v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~d~~~~~~~-~~fD~I~~  101 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGYD-VTAWDKNPASMANLERIKAAEGL------DNLQTDLVDLNTLTFD-GEYDFILS  101 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTC------TTEEEEECCTTTCCCC-CCEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhhh-hccccCcHHHHHHHHHHhhhccc------cchhhhheeccccccc-ccccEEEE
Confidence            3459999999999999999988875 99999999999999988765433      4688999999988765 79999999


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      ..++||+++.+...+++++.++|+|||.+++......... .......+.++..++.+++  .||+++...+
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-~~~~~~~~~~~~~el~~~~--~~~~i~~~~e  170 (198)
T d2i6ga1         102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDF-PCTVGFPFAFKEGELRRYY--EGWDMLKYNE  170 (198)
T ss_dssp             ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC----------CCCCBCTTHHHHHT--TTSEEEEEEE
T ss_pred             eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccC-CCCCCCCCccCHHHHHHHh--CCCeEEEeee
Confidence            9999999988889999999999999999999765432221 1112222335666677777  5888876443

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.83  E-value=2.2e-20  Score=164.46  Aligned_cols=137  Identities=21%  Similarity=0.229  Sum_probs=110.4

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      ++.+|||||||+|.++..+++.+. .|+|+|+|+.|++.|+++..          .++.+..+++++++++ ++||+|++
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~----------~~~~~~~~~~~~~~~~-~~fD~I~~   87 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK----------DGITYIHSRFEDAQLP-RRYDNIVL   87 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC----------SCEEEEESCGGGCCCS-SCEEEEEE
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc----------cccccccccccccccc-cccccccc
Confidence            456899999999999999987776 49999999999999998864          3588999999888765 79999999


Q ss_pred             chhhhcCChhhHHHHHHHHH-HcCCCCcEEEEEecccCCC---------c-----eec----CCCCceecCHHHHHHHHH
Q 018970          237 QWCIGHLTDDDFVSFFKRAK-VGLKPGGFFVLKENIARSG---------F-----VLD----KEDRSITRSDFYFKELFS  297 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~-~~LkpgG~lii~~~~~~~~---------~-----~~d----~~~~~~~~s~~~l~~l~~  297 (348)
                      ..+|+|++  |+..+++++. ++|||||.+++..+.....         .     ...    ...+...++.+.+.++++
T Consensus        88 ~~vleh~~--d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~  165 (225)
T d2p7ia1          88 THVLEHID--DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDAS  165 (225)
T ss_dssp             ESCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHH
T ss_pred             cceeEecC--CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHH
Confidence            99999998  7889999998 7999999999975332211         0     000    012233468999999999


Q ss_pred             hcCCeEEEEe
Q 018970          298 RCGLHIYKSK  307 (348)
Q Consensus       298 ~aGf~~v~~~  307 (348)
                      ++||+++...
T Consensus       166 ~~Gf~i~~~~  175 (225)
T d2p7ia1         166 RAGLQVTYRS  175 (225)
T ss_dssp             HTTCEEEEEE
T ss_pred             HCCCEEEEEE
Confidence            9999988754

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=5.7e-20  Score=167.75  Aligned_cols=165  Identities=13%  Similarity=0.091  Sum_probs=125.8

Q ss_pred             ChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcc
Q 018970          134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA  213 (348)
Q Consensus       134 ~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~  213 (348)
                      ++........+.+.+++.   +.++.+|||||||+|.++.+++++....|+|+++|+.+++.+++++...++     ...
T Consensus        41 tL~~Aq~~k~~~~~~~l~---l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l-----~~~  112 (291)
T d1kpia_          41 TLEEAQYAKRKLALDKLN---LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----PRR  112 (291)
T ss_dssp             CHHHHHHHHHHHHHHTTC---CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCC-----SSC
T ss_pred             CHHHHHHHHHHHHHHhcC---CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhcc-----chh
Confidence            344444444455555555   899999999999999999999977666899999999999999999887665     456


Q ss_pred             eeEEEcCCCCCCCCCCceeEEeechhhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEecccCCCc----------
Q 018970          214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENIARSGF----------  276 (348)
Q Consensus       214 i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~-------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~----------  276 (348)
                      +.+...|...   .+++||.|++..+++|+.+       ++...+++++.++|||||.+++.........          
T Consensus       113 v~~~~~d~~~---~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p  189 (291)
T d1kpia_         113 KEVRIQGWEE---FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSP  189 (291)
T ss_dssp             EEEEECCGGG---CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCC
T ss_pred             hhhhhhcccc---cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCc
Confidence            7777777543   3478999999999999985       3578999999999999999999764432211          


Q ss_pred             ---------ee-cCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          277 ---------VL-DKEDRSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       277 ---------~~-d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                               +. -........|...+..+++++||++......
T Consensus       190 ~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~~~~  232 (291)
T d1kpia_         190 MSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRI  232 (291)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEEC
T ss_pred             hhhcccchHHHHHhcCCCCCCCHHHHHhhhcccccccceeeec
Confidence                     00 0122334458888999999999999887653

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.81  E-value=3e-19  Score=159.80  Aligned_cols=123  Identities=16%  Similarity=0.153  Sum_probs=99.1

Q ss_pred             hhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeE
Q 018970          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (348)
Q Consensus       137 ~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~  216 (348)
                      ..+++++..+.+..    .+++.+|||||||+|..+..++..++.+|+|+|+|+.|++.|+++....+.     ..++.|
T Consensus         8 ~~~N~vK~~lI~~~----~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~-----~~~v~f   78 (252)
T d1ri5a_           8 NANNFIKACLIRLY----TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----RFKVFF   78 (252)
T ss_dssp             HHHHHHHHHHHHHH----CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEE
T ss_pred             HHHHHHHHHHHHHh----CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC-----CcceEE
Confidence            34455655543322    457789999999999999999888887899999999999999988765322     357999


Q ss_pred             EEcCCCCCCC-CCCceeEEeechhhhcCC--hhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          217 FCVPLQDFTP-ETGRYDVIWVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       217 ~~~d~~~~~~-~~~~fD~Ii~~~~l~~~~--~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      .++|+...+. ..++||+|+|.+++||+.  .+++..+++++.++|||||+|++.
T Consensus        79 ~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          79 RAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEcchhhhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            9999976654 346899999999999973  356889999999999999999985

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.80  E-value=1.4e-19  Score=164.65  Aligned_cols=120  Identities=16%  Similarity=0.230  Sum_probs=99.4

Q ss_pred             HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeE
Q 018970          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (348)
Q Consensus       139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~  216 (348)
                      ..++..++.....   +.++.+|||||||+|.++..++.....  .|+|+|+|+.|++.|++++...       +.+++|
T Consensus        12 ~d~l~~l~~~~~~---~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-------~~~~~f   81 (281)
T d2gh1a1          12 DDYVSFLVNTVWK---ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-------PYDSEF   81 (281)
T ss_dssp             HHHHHHHHHTTSC---CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS-------SSEEEE
T ss_pred             HHHHHHHHHHHhc---cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc-------cccccc
Confidence            3444444443323   567789999999999999988865442  6999999999999999988764       346899


Q ss_pred             EEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       217 ~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      .+.|+.+++++ ++||+|++..+++|++  ++..+++++.++|||||.+++.+..
T Consensus        82 ~~~d~~~~~~~-~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          82 LEGDATEIELN-DKYDIAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             EESCTTTCCCS-SCEEEEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccccccccccc-CCceEEEEehhhhcCC--CHHHHHHHHHHHcCcCcEEEEEECC
Confidence            99999998875 6899999999999999  7889999999999999999998743

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=8.8e-20  Score=161.48  Aligned_cols=112  Identities=21%  Similarity=0.319  Sum_probs=93.2

Q ss_pred             HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEE
Q 018970          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC  218 (348)
Q Consensus       139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~  218 (348)
                      ..++..++.+.     ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++...            .+..
T Consensus        29 ~~~~~~~~~~~-----~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~------------~~~~   90 (246)
T d2avna1          29 HRLIGSFLEEY-----LKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK------------NVVE   90 (246)
T ss_dssp             HHHHHHHHHHH-----CCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS------------CEEE
T ss_pred             HHHHHHHHHHh-----cCCCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccccc------------cccc
Confidence            44555555443     34667999999999999999997766 599999999999999987532            3567


Q ss_pred             cCCCCCCCCCCceeEEeec-hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          219 VPLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       219 ~d~~~~~~~~~~fD~Ii~~-~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      +|++++++++++||+|++. .++||++  |+..+|+++.++|||||.+++..+
T Consensus        91 ~~~~~l~~~~~~fD~ii~~~~~~~~~~--d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1          91 AKAEDLPFPSGAFEAVLALGDVLSYVE--NKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             CCTTSCCSCTTCEEEEEECSSHHHHCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccccccceeeecchhhhhh--hHHHHHHHHHhhcCcCcEEEEEEC
Confidence            8999998888999999985 6899998  677999999999999999999753

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.1e-20  Score=162.95  Aligned_cols=169  Identities=14%  Similarity=0.083  Sum_probs=116.6

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCC---------
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM---------  210 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~---------  210 (348)
                      .++.+.+.+.+. ....++.+|||||||+|.++..++..+...|+|+|+|+.|++.|++++..........         
T Consensus        35 ~~~~~~~~~~~~-~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~  113 (257)
T d2a14a1          35 KFNLECLHKTFG-PGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL  113 (257)
T ss_dssp             HHHHHHHHHHHS-TTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-ccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHh
Confidence            444444444433 1245677999999999999887777777679999999999999999876532211000         


Q ss_pred             --------------Ccce-eEEEc----CCCCCCCCCCceeEEeechhhhcCCh--hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          211 --------------HKAT-NFFCV----PLQDFTPETGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       211 --------------~~~i-~~~~~----d~~~~~~~~~~fD~Ii~~~~l~~~~~--~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                                    ...+ .....    +....+...++||+|++..++||+..  +++..++++++++|||||.+++.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~  193 (257)
T d2a14a1         114 EGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  193 (257)
T ss_dssp             TTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEE
Confidence                          0000 11111    11112345679999999999999964  578899999999999999999988


Q ss_pred             cccCCCceecCCC-CceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          270 NIARSGFVLDKED-RSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       270 ~~~~~~~~~d~~~-~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      ......+...... ....++.+++.++|+++||++++....
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~  234 (257)
T d2a14a1         194 TLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHS  234 (257)
T ss_dssp             ESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ecccccceeccccccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence            6654444322221 223468999999999999998886543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.79  E-value=2.7e-19  Score=152.88  Aligned_cols=149  Identities=10%  Similarity=0.018  Sum_probs=112.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCc------CCCcceeEEEcCCCCCCCC-
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP------DMHKATNFFCVPLQDFTPE-  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~------~~~~~i~~~~~d~~~~~~~-  227 (348)
                      +.++.+|||+|||+|+.+.+|+++++. |+|+|+|+.|++.|+++.+..+....      .....+++.++|+.+++.. 
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~   96 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   96 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcCCc-eEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence            678899999999999999999999885 99999999999999999865322100      0123467888888887632 


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      ...||+|++..+++|+++++...++++++++|||||.+++.........   .....+..+.+++.+++. .+|++....
T Consensus        97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~---~~~p~~~~~~~el~~l~~-~~~~i~~~~  172 (201)
T d1pjza_          97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL---LEGPPFSVPQTWLHRVMS-GNWEVTKVG  172 (201)
T ss_dssp             HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS---SSSCCCCCCHHHHHHTSC-SSEEEEEEE
T ss_pred             ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccccc---CCCccccCCHHHHHHHhC-CCcEEEEEE
Confidence            3689999999999999988889999999999999999888653322111   111223457788888774 577765544


Q ss_pred             e
Q 018970          308 D  308 (348)
Q Consensus       308 ~  308 (348)
                      .
T Consensus       173 ~  173 (201)
T d1pjza_         173 G  173 (201)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.78  E-value=8.9e-19  Score=157.20  Aligned_cols=150  Identities=17%  Similarity=0.184  Sum_probs=117.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      .....+|||||||+|.++..++++++. +++++|+ +.+++.+++++...++     ..++.+...|+.+. .+ ..||+
T Consensus        79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~-----~~ri~~~~~d~~~~-~p-~~~D~  150 (256)
T d1qzza2          79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL-----ADRVTVAEGDFFKP-LP-VTADV  150 (256)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTSC-CS-CCEEE
T ss_pred             CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCC-----cceeeeeeeecccc-cc-ccchh
Confidence            345568999999999999999999876 8999997 7899999988876544     46788999888753 22 56999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc--------eecC----CCCceecCHHHHHHHHHhcCC
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF--------VLDK----EDRSITRSDFYFKELFSRCGL  301 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~--------~~d~----~~~~~~~s~~~l~~l~~~aGf  301 (348)
                      |++.++|||+++++...+|++++++|||||.|+|.+.......        .++.    ......+|.++|.++|+++||
T Consensus       151 v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf  230 (256)
T d1qzza2         151 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGL  230 (256)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTE
T ss_pred             hhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCC
Confidence            9999999999988889999999999999999999886432111        0110    011233689999999999999


Q ss_pred             eEEEEeecCCC
Q 018970          302 HIYKSKDQKGL  312 (348)
Q Consensus       302 ~~v~~~~~~~~  312 (348)
                      ++++.......
T Consensus       231 ~~~~~~~~~~~  241 (256)
T d1qzza2         231 ALASERTSGST  241 (256)
T ss_dssp             EEEEEEEECCS
T ss_pred             ceeEEEEeCCc
Confidence            99998766543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.9e-18  Score=152.29  Aligned_cols=147  Identities=12%  Similarity=0.030  Sum_probs=113.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCC-----------CcCCCcceeEEEcCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-----------APDMHKATNFFCVPLQD  223 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~-----------~~~~~~~i~~~~~d~~~  223 (348)
                      +.++.+|||+|||+|..+..|++.++. |+|+|+|+.+|+.|+++....+..           ......++++.++|+.+
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~G~~-V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADRGHS-VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTCE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            567789999999999999999998885 999999999999999886542110           00113578999999988


Q ss_pred             CC-CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCe
Q 018970          224 FT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLH  302 (348)
Q Consensus       224 ~~-~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~  302 (348)
                      ++ ...+.||+|+...+++|+++++...+++++.++|||||.+++.........   .....+..+.+++.++|.. +|.
T Consensus       122 l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~---~~gpp~~~~~~el~~lf~~-~~~  197 (229)
T d2bzga1         122 LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTK---HPGPPFYVPHAEIERLFGK-ICN  197 (229)
T ss_dssp             GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTT---CCCSSCCCCHHHHHHHHTT-TEE
T ss_pred             ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCC---CCCCCCCCCHHHHHHHhcC-CCE
Confidence            75 345799999999999999998999999999999999999887654322111   1122344688999999965 676


Q ss_pred             EEEE
Q 018970          303 IYKS  306 (348)
Q Consensus       303 ~v~~  306 (348)
                      +...
T Consensus       198 i~~l  201 (229)
T d2bzga1         198 IRCL  201 (229)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6443

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.9e-19  Score=161.07  Aligned_cols=154  Identities=14%  Similarity=0.197  Sum_probs=111.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCC------------------------
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM------------------------  210 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~------------------------  210 (348)
                      ...+.+|||||||+|.++...+.+.+.+|+++|+|+.|++.+++.+.+....- +.                        
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAF-NWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCC-CCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccc-cchhhhhhhhhhccccchhhhhHHHh
Confidence            45678999999999988776666777789999999999999998876532100 00                        


Q ss_pred             -CcceeEEEcCCCC------CCCCCCceeEEeechhhhcCCh--hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCC
Q 018970          211 -HKATNFFCVPLQD------FTPETGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKE  281 (348)
Q Consensus       211 -~~~i~~~~~d~~~------~~~~~~~fD~Ii~~~~l~~~~~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~  281 (348)
                       .........|+..      .....++||+|++..++||+..  +++..++++++++|||||.|++........+.....
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~  210 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA  210 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCc
Confidence             0011233345433      1233468999999999999963  568899999999999999999988665443332222


Q ss_pred             C-CceecCHHHHHHHHHhcCCeEEEEeec
Q 018970          282 D-RSITRSDFYFKELFSRCGLHIYKSKDQ  309 (348)
Q Consensus       282 ~-~~~~~s~~~l~~l~~~aGf~~v~~~~~  309 (348)
                      . ..+.++.+++.++|+++||++++....
T Consensus       211 ~~~~~~~t~e~v~~~l~~aGf~v~~~~~~  239 (263)
T d2g72a1         211 RLTVVPVSEEEVREALVRSGYKVRDLRTY  239 (263)
T ss_dssp             EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence            2 123369999999999999999875543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.75  E-value=1.1e-17  Score=147.35  Aligned_cols=152  Identities=13%  Similarity=0.004  Sum_probs=117.0

Q ss_pred             hcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-C
Q 018970          149 RFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-P  226 (348)
Q Consensus       149 ~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~  226 (348)
                      -+....++++.+|||+|||+|..+..+++.++. .|+++|+|+.|++.+++++..        ..++.....|..... +
T Consensus        66 gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~--------~~ni~~i~~d~~~~~~~  137 (230)
T d1g8sa_          66 GLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--------RENIIPILGDANKPQEY  137 (230)
T ss_dssp             TCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--------CTTEEEEECCTTCGGGG
T ss_pred             hHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh--------hcccceEEEeeccCccc
Confidence            344456899999999999999999999987654 799999999999999998776        356777777776643 3


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      .+..+|++++...+++..  +...+++++.+.|||||.+++.........     ........+++.+.|+++||++++.
T Consensus       138 ~~~~~~v~~i~~~~~~~~--~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~-----~~~~~~~~~e~~~~L~~aGF~ive~  210 (230)
T d1g8sa_         138 ANIVEKVDVIYEDVAQPN--QAEILIKNAKWFLKKGGYGMIAIKARSIDV-----TKDPKEIFKEQKEILEAGGFKIVDE  210 (230)
T ss_dssp             TTTCCCEEEEEECCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEGGGTCS-----SSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             ccccceeEEeeccccchH--HHHHHHHHHHHhcccCceEEEEeeccccCC-----CCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            446778888877788777  788999999999999999998864332111     0111123356788999999999998


Q ss_pred             eecCCCCcc
Q 018970          307 KDQKGLPEE  315 (348)
Q Consensus       307 ~~~~~~~~~  315 (348)
                      ....++..+
T Consensus       211 idL~py~~~  219 (230)
T d1g8sa_         211 VDIEPFEKD  219 (230)
T ss_dssp             EECTTTSTT
T ss_pred             ecCCCCcCC
Confidence            888877655

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-18  Score=154.08  Aligned_cols=141  Identities=15%  Similarity=0.070  Sum_probs=100.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--CCCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~  233 (348)
                      .++.+|||||||+|..+..+++..+.+|+++|+|+.|++.|++++...       ..++.+...++...  ..+.++||.
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~fD~  124 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDG  124 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhc-------ccccccccccccccccccccccccc
Confidence            467899999999999999998766668999999999999999998654       34566666665442  344578888


Q ss_pred             Ee-----echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          234 IW-----VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       234 Ii-----~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      |+     +...++|+.  +...++++++++|||||.|++......................+.+...+.++||+..+
T Consensus       125 i~fD~~~~~~~~~~~~--~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~~~  199 (229)
T d1zx0a1         125 ILYDTYPLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRREN  199 (229)
T ss_dssp             EEECCCCCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGG
T ss_pred             eeeccccccccccccc--CHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCeeEE
Confidence            87     567778877  78899999999999999998754322111111111111112334566778889997443

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.8e-17  Score=145.51  Aligned_cols=163  Identities=15%  Similarity=0.200  Sum_probs=111.1

Q ss_pred             HHHHHHHhhhcCCc-cCCCCCcEEEEeccccHHHHHHHHh----CCC---cEEEEcCCHHHHHHHHHHhCCCCCCCcCCC
Q 018970          140 AFLQMLLSDRFPNA-RNNQHLVALDCGSGIGRITKNLLIR----YFN---EVDLLEPVSHFLDAARESLAPENHMAPDMH  211 (348)
Q Consensus       140 ~~l~~~l~~~l~~~-~~~~~~~VLDvGcG~G~~~~~la~~----~~~---~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~  211 (348)
                      .++...+...+... ..++..+|||||||+|.++..++..    +..   .++++|+|+.|++.+++++......   ..
T Consensus        22 ~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~---~~   98 (280)
T d1jqea_          22 EFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL---EN   98 (280)
T ss_dssp             HHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC---TT
T ss_pred             HHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc---cc
Confidence            44444444443321 1344558999999999998887654    222   5899999999999999987653110   01


Q ss_pred             cceeEEEcCCCCC------CCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc---------
Q 018970          212 KATNFFCVPLQDF------TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF---------  276 (348)
Q Consensus       212 ~~i~~~~~d~~~~------~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~---------  276 (348)
                      ..+++...+++++      +.++++||+|++..++||++  |+..++++++++|+|||.|++.........         
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~  176 (280)
T d1jqea_          99 VKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGS  176 (280)
T ss_dssp             EEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGG
T ss_pred             ccccchhhhhhhhcchhcccCCCCceeEEEEccceecCC--CHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHH
Confidence            2234444444321      23458999999999999998  788999999999999999998764332211         


Q ss_pred             eecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          277 VLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       277 ~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      .+........++.+.+.+++++.||......
T Consensus       177 ~~~~~~~~~~~~~~~~~~~L~~~G~~~~~~~  207 (280)
T d1jqea_         177 RFPQDDLCQYITSDDLTQMLDNLGLKYECYD  207 (280)
T ss_dssp             GSCCCTTSCCCCHHHHHHHHHHHTCCEEEEE
T ss_pred             hcCCCcccccCCHHHHHHHHHHCCCceEEEe
Confidence            1112233334678889999999999865533

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=3e-17  Score=146.57  Aligned_cols=128  Identities=15%  Similarity=0.114  Sum_probs=102.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|++++...+       .++.+...|+.+. .+.++||+|
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~-------~~~~~~~~d~~~~-~~~~~fD~V  188 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNG-------VRPRFLEGSLEAA-LPFGPFDLL  188 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTT-------CCCEEEESCHHHH-GGGCCEEEE
T ss_pred             cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcC-------CceeEEecccccc-ccccccchh
Confidence            35778999999999999998887665 69999999999999999887653       3467888887653 234789999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      +++...+     .+..+++.+.++|||||+|+++....              ...+.+.+.++++||++++.....
T Consensus       189 ~ani~~~-----~l~~l~~~~~~~LkpGG~lilSgil~--------------~~~~~v~~~~~~~Gf~~~~~~~~~  245 (254)
T d2nxca1         189 VANLYAE-----LHAALAPRYREALVPGGRALLTGILK--------------DRAPLVREAMAGAGFRPLEEAAEG  245 (254)
T ss_dssp             EEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEG--------------GGHHHHHHHHHHTTCEEEEEEEET
T ss_pred             hhccccc-----cHHHHHHHHHHhcCCCcEEEEEecch--------------hhHHHHHHHHHHCCCEEEEEEEEC
Confidence            9976555     46678999999999999999976321              235678999999999998876654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.66  E-value=2.9e-16  Score=136.27  Aligned_cols=152  Identities=13%  Similarity=0.032  Sum_probs=106.7

Q ss_pred             ccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCC--
Q 018970          153 ARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG--  229 (348)
Q Consensus       153 ~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~--  229 (348)
                      ..++|+.+|||+|||+|..+..+++.... .|+++|+|+.|++.|++++..        ..++.+...|..+......  
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~--------~~ni~~i~~d~~~~~~~~~~~  123 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--------RNNIIPLLFDASKPWKYSGIV  123 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--------CSSEEEECSCTTCGGGTTTTC
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc--------cCCceEEEeeccCcccccccc
Confidence            34889999999999999999999876543 799999999999999988765        3578899998887543333  


Q ss_pred             -ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          230 -RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       230 -~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                       .+|+|+.  .+.|..  +...+++++.++|||||.+++......    .+... ..........+.+ ++||++++...
T Consensus       124 ~~vd~v~~--~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~----~d~~~-~~~~~~~~~~~~l-~~gf~i~E~i~  193 (209)
T d1nt2a_         124 EKVDLIYQ--DIAQKN--QIEILKANAEFFLKEKGEVVIMVKARS----IDSTA-EPEEVFKSVLKEM-EGDFKIVKHGS  193 (209)
T ss_dssp             CCEEEEEE--CCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEHHH----HCTTS-CHHHHHHHHHHHH-HTTSEEEEEEE
T ss_pred             ceEEEEEe--cccChh--hHHHHHHHHHHHhccCCeEEEEEEccc----cCCCC-CHHHHHHHHHHHH-HcCCEEEEEEc
Confidence             3444433  355545  678899999999999999998753211    01000 0000011222333 37999999998


Q ss_pred             cCCCCccceEEEEE
Q 018970          309 QKGLPEELFAVKMY  322 (348)
Q Consensus       309 ~~~~~~~l~~v~~~  322 (348)
                      ..+|..+.+-+..|
T Consensus       194 L~P~~~~H~~v~~~  207 (209)
T d1nt2a_         194 LMPYHRDHIFIHAY  207 (209)
T ss_dssp             CTTTCTTEEEEEEE
T ss_pred             cCCCccCcEEEEEE
Confidence            88887776655444

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.7e-16  Score=141.74  Aligned_cols=96  Identities=17%  Similarity=0.176  Sum_probs=84.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV  233 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  233 (348)
                      ..++.+|||||||+|.++..+++.++. .++|+|+|+.|++.|+++.           .++.|.++|+.++++++++||+
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----------~~~~~~~~d~~~l~~~~~sfD~  150 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----------PQVTFCVASSHRLPFSDTSMDA  150 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTSCSBCTTCEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----------ccccceeeehhhccCCCCCEEE
Confidence            356779999999999999999988765 7999999999999999874           3588999999999988899999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      |++..+++|         ++++.|+|||||.|++..+
T Consensus       151 v~~~~~~~~---------~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         151 IIRIYAPCK---------AEELARVVKPGGWVITATP  178 (268)
T ss_dssp             EEEESCCCC---------HHHHHHHEEEEEEEEEEEE
T ss_pred             EeecCCHHH---------HHHHHHHhCCCcEEEEEee
Confidence            999888776         3568999999999999864

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.65  E-value=2.6e-16  Score=134.05  Aligned_cols=124  Identities=19%  Similarity=0.230  Sum_probs=100.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||+|||+|.++..++..+ .+|+++|+|+.|++.|++++...++     ..++++.++|+.+...+...||+|
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl-----~~~v~~~~gda~~~~~~~~~~D~v  104 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGL-----GDNVTLMEGDAPEALCKIPDIDIA  104 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTC-----CTTEEEEESCHHHHHTTSCCEEEE
T ss_pred             CCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCC-----CcceEEEECchhhcccccCCcCEE
Confidence            6789999999999999999988654 4799999999999999999887655     468999999988766666799999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHI  303 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~  303 (348)
                      ++....++     ...+++.+.+.|||||++++.....              -+...+.+.++..|+..
T Consensus       105 ~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~~~~--------------e~~~~~~~~l~~~~~~~  154 (186)
T d1l3ia_         105 VVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAILL--------------ETKFEAMECLRDLGFDV  154 (186)
T ss_dssp             EESCCTTC-----HHHHHHHHHHTEEEEEEEEEEECBH--------------HHHHHHHHHHHHTTCCC
T ss_pred             EEeCcccc-----chHHHHHHHHHhCcCCEEEEEeecc--------------ccHHHHHHHHHHcCCCe
Confidence            99876654     5678999999999999998865321              12344667788888753

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.64  E-value=3.9e-16  Score=133.81  Aligned_cols=108  Identities=17%  Similarity=0.103  Sum_probs=88.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++...++.    ..++++...|+.+ ..++++||+|
T Consensus        50 ~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~----~~~i~~~~~d~~~-~~~~~~fD~I  123 (194)
T d1dusa_          50 VDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLD----NYDIRVVHSDLYE-NVKDRKYNKI  123 (194)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCT----TSCEEEEECSTTT-TCTTSCEEEE
T ss_pred             cCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCc----cceEEEEEcchhh-hhccCCceEE
Confidence            56788999999999999999886554 6999999999999999987654432    2358899999876 3445799999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +++.++|+.. +....+++.+.++|||||.+++..
T Consensus       124 i~~~p~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~  157 (194)
T d1dusa_         124 ITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             EECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcccEEecc-hhhhhHHHHHHHhcCcCcEEEEEE
Confidence            9999887655 335789999999999999998754

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=4e-16  Score=142.16  Aligned_cols=120  Identities=19%  Similarity=0.231  Sum_probs=86.8

Q ss_pred             HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEE
Q 018970          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC  218 (348)
Q Consensus       139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~  218 (348)
                      ..++...+..       .++.+|||+|||+|.++..|++++. +|+|+|+|+.||+.|+++....+....  .....+..
T Consensus        45 ~~~l~~~l~~-------~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~--~~~~~~~~  114 (292)
T d1xvaa_          45 KAWLLGLLRQ-------HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPA--FDKWVIEE  114 (292)
T ss_dssp             HHHHHHHHHH-------TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHH--HHTCEEEE
T ss_pred             HHHHHHHhhh-------cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccc--cceeeeee
Confidence            3455555543       3456899999999999999998877 599999999999999987654322100  11233444


Q ss_pred             cCCCCCC---CCCCceeEEeec-hhhhcCCh-----hhHHHHHHHHHHcCCCCcEEEEE
Q 018970          219 VPLQDFT---PETGRYDVIWVQ-WCIGHLTD-----DDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       219 ~d~~~~~---~~~~~fD~Ii~~-~~l~~~~~-----~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      .++..+.   +..++||+|++. .+++|+++     ++...+|++++++|||||+|++.
T Consensus       115 ~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         115 ANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             CCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence            4443211   223689999975 58999864     35788999999999999999985

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.56  E-value=5.5e-15  Score=131.20  Aligned_cols=127  Identities=16%  Similarity=0.160  Sum_probs=99.5

Q ss_pred             ccCCCCCcEEEEeccccHHHHHHHHh-CCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCc
Q 018970          153 ARNNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR  230 (348)
Q Consensus       153 ~~~~~~~~VLDvGcG~G~~~~~la~~-~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  230 (348)
                      ..+.++.+|||+|||+|.++..++.. ++. .|+++|.++.+++.|++++...+.     ..++++...|+.+... ++.
T Consensus        81 l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~-----~~nv~~~~~Di~~~~~-~~~  154 (250)
T d1yb2a1          81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----IGNVRTSRSDIADFIS-DQM  154 (250)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----CTTEEEECSCTTTCCC-SCC
T ss_pred             cCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC-----CCceEEEEeeeecccc-cce
Confidence            34889999999999999999999865 333 799999999999999999876433     4679999999988643 478


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      ||.|++     +++  ++..+++.+.++|||||+|++..+..              -....+.+.+++.||..++.
T Consensus       155 fD~V~l-----d~p--~p~~~l~~~~~~LKpGG~lv~~~P~i--------------~Qv~~~~~~l~~~gf~~i~~  209 (250)
T d1yb2a1         155 YDAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYLPNF--------------DQSEKTVLSLSASGMHHLET  209 (250)
T ss_dssp             EEEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEESSH--------------HHHHHHHHHSGGGTEEEEEE
T ss_pred             eeeeee-----cCC--chHHHHHHHHHhcCCCceEEEEeCCc--------------ChHHHHHHHHHHCCCceeEE
Confidence            999986     355  55689999999999999999865321              11234556677789986663

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=6.4e-15  Score=128.05  Aligned_cols=101  Identities=20%  Similarity=0.197  Sum_probs=84.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      ++++.+|||||||+|+++..++.....  .|+++|+++.+++.|++++...++      .++.+.+.|..+..+..++||
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~------~n~~~~~~d~~~~~~~~~~fD  146 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVCGDGYYGVPEFSPYD  146 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEE
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc------cccccccCchHHccccccchh
Confidence            788999999999999999988865432  799999999999999999876443      567888888877665567899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++..+++++++        .+.+.|||||.|++..
T Consensus       147 ~I~~~~~~~~~p~--------~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         147 VIFVTVGVDEVPE--------TWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             EEEECSBBSCCCH--------HHHHHEEEEEEEEEEB
T ss_pred             hhhhhccHHHhHH--------HHHHhcCCCcEEEEEE
Confidence            9999999999882        3567899999998854

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=1.8e-13  Score=119.63  Aligned_cols=149  Identities=12%  Similarity=0.037  Sum_probs=104.3

Q ss_pred             hcCCccCCCCCcEEEEeccccHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--
Q 018970          149 RFPNARNNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--  224 (348)
Q Consensus       149 ~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--  224 (348)
                      -+....++++.+|||+|||+|..+..+++.. .. .|+++|+|+.|++.+++++..        ..++.....|....  
T Consensus        65 ~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~--------~~~~~~i~~d~~~~~~  136 (227)
T d1g8aa_          65 GLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--------RRNIVPILGDATKPEE  136 (227)
T ss_dssp             TCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------CTTEEEEECCTTCGGG
T ss_pred             cccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh--------cCCceEEEEECCCccc
Confidence            3455568999999999999999999999763 33 799999999999999999876        34566777776543  


Q ss_pred             -CCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeE
Q 018970          225 -TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHI  303 (348)
Q Consensus       225 -~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~  303 (348)
                       ......+|+|++.  +.+..  +...+++++.+.|||||.+++.........  ......   -..+..+ +.+.||++
T Consensus       137 ~~~~~~~vD~i~~d--~~~~~--~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~--~~~~~~---v~~~v~~-l~~~gf~i  206 (227)
T d1g8aa_         137 YRALVPKVDVIFED--VAQPT--QAKILIDNAEVYLKRGGYGMIAVKSRSIDV--TKEPEQ---VFREVER-ELSEYFEV  206 (227)
T ss_dssp             GTTTCCCEEEEEEC--CCSTT--HHHHHHHHHHHHEEEEEEEEEEEEGGGTCT--TSCHHH---HHHHHHH-HHHTTSEE
T ss_pred             ccccccceEEEEEE--ccccc--hHHHHHHHHHHhcccCCeEEEEEECCccCC--CCCHHH---HHHHHHH-HHHcCCEE
Confidence             2334678888763  44444  677899999999999999998753211000  000000   0122333 34569999


Q ss_pred             EEEeecCCCCcc
Q 018970          304 YKSKDQKGLPEE  315 (348)
Q Consensus       304 v~~~~~~~~~~~  315 (348)
                      ++.....++..+
T Consensus       207 ie~i~L~p~~~~  218 (227)
T d1g8aa_         207 IERLNLEPYEKD  218 (227)
T ss_dssp             EEEEECTTTSSS
T ss_pred             EEEEcCCCCCCc
Confidence            998887777654

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.50  E-value=2.1e-14  Score=123.84  Aligned_cols=128  Identities=14%  Similarity=0.206  Sum_probs=99.9

Q ss_pred             CcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeEEe
Q 018970          159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW  235 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~Ii  235 (348)
                      ..|||||||+|.++..++...++ .++|+|+++.++..|.+++...++      .|+.+..+|+..+.  ++++++|.|+
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l------~Nv~~~~~Da~~l~~~~~~~~~d~v~  104 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTDVFEPGEVKRVY  104 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc------cCchhcccchhhhhcccCchhhhccc
Confidence            36999999999999999988876 899999999999999988876543      57999999987754  5678999999


Q ss_pred             echhhhcCChhh------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          236 VQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       236 ~~~~l~~~~~~d------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      +.+...+.....      ...+++.+.++|||||.|++......             + .+++.+.+.+.|+.....
T Consensus       105 i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~-------------y-~~~~~~~~~~~~~~~~~~  167 (204)
T d2fcaa1         105 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG-------------L-FEYSLKSFSEYGLLLTYV  167 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH-------------H-HHHHHHHHHHHTCEEEEE
T ss_pred             cccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChH-------------H-HHHHHHHHHHCCCccccC
Confidence            988877655322      14799999999999999998752210             1 234566777777765443

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=4e-14  Score=126.92  Aligned_cols=127  Identities=13%  Similarity=0.070  Sum_probs=99.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-C-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+|||+|.++..++.... . .|+++|+++.+++.|++++...++     ..++.+...|+... +....||
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~-----~~~v~~~~~d~~~~-~~~~~~D  174 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVTIKVRDISEG-FDEKDVD  174 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEEEECCCGGGC-CSCCSEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc-----ccCcEEEecccccc-cccccee
Confidence            78999999999999999999987643 2 799999999999999999887654     45677777776442 2346789


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      .|+.     +++  ++..+++++.++|||||.|++..+..              -..+.+.+.+++.||..++..+
T Consensus       175 ~V~~-----d~p--~p~~~l~~~~~~LKpGG~lv~~~P~~--------------~Qv~~~~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         175 ALFL-----DVP--DPWNYIDKCWEALKGGGRFATVCPTT--------------NQVQETLKKLQELPFIRIEVWE  229 (266)
T ss_dssp             EEEE-----CCS--CGGGTHHHHHHHEEEEEEEEEEESSH--------------HHHHHHHHHHHHSSEEEEEEEC
T ss_pred             eeEe-----cCC--CHHHHHHHHHhhcCCCCEEEEEeCcc--------------cHHHHHHHHHHHCCceeEEEEE
Confidence            8864     666  66789999999999999999875432              1223466778889998777554

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=2.6e-14  Score=132.18  Aligned_cols=105  Identities=17%  Similarity=0.177  Sum_probs=88.6

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .++.+|||||||+|.++..+++.+...|+++|.|+ +++.|++.....++     ..++.+...++.+++.++++||+|+
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~-----~~~i~~i~~~~~~l~~~~~~~D~i~  110 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGF-----SDKITLLRGKLEDVHLPFPKVDIII  110 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTC-----TTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCc-----cccceEEEeehhhccCcccceeEEE
Confidence            35679999999999999988888887899999996 67788877665444     5679999999999988778999999


Q ss_pred             echhhhcCCh-hhHHHHHHHHHHcCCCCcEEE
Q 018970          236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFV  266 (348)
Q Consensus       236 ~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~li  266 (348)
                      +.++.+++.. ..+..++..+.++|||||.++
T Consensus       111 se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            9887776654 457889999999999999986

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.50  E-value=2e-14  Score=128.36  Aligned_cols=107  Identities=17%  Similarity=0.109  Sum_probs=89.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.|+.+|||+|||+|.++..|+.. ++. +|+++|+++++++.|++++.....   ....++.+...|+.+.++++++||
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~---~~~~nv~~~~~d~~~~~~~~~~fD  170 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG---QPPDNWRLVVSDLADSELPDGSVD  170 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---SCCTTEEEECSCGGGCCCCTTCEE
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc---CCCceEEEEecccccccccCCCcc
Confidence            789999999999999999999976 343 799999999999999998754210   113578999999988877789999


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      .|++     +++  ++..++.++.++|||||.+++..+.
T Consensus       171 aV~l-----dlp--~P~~~l~~~~~~LkpGG~lv~~~P~  202 (264)
T d1i9ga_         171 RAVL-----DML--APWEVLDAVSRLLVAGGVLMVYVAT  202 (264)
T ss_dssp             EEEE-----ESS--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             eEEE-----ecC--CHHHHHHHHHhccCCCCEEEEEeCc
Confidence            9985     567  6678999999999999999887643

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.48  E-value=5.4e-14  Score=124.51  Aligned_cols=138  Identities=14%  Similarity=0.202  Sum_probs=105.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ....+|||||||+|.++..++++++. +++++|. |..++.    ...        ..++++..+|+.+-. +  ..|+|
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~----~~~--------~~ri~~~~gd~~~~~-p--~~D~~  143 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN----APP--------LSGIEHVGGDMFASV-P--QGDAM  143 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT----CCC--------CTTEEEEECCTTTCC-C--CEEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc----cCC--------CCCeEEecCCccccc-c--cceEE
Confidence            45578999999999999999999887 8899996 444431    111        357999999986532 2  45999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc----------eecCC----CCceecCHHHHHHHHHhcC
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF----------VLDKE----DRSITRSDFYFKELFSRCG  300 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~----------~~d~~----~~~~~~s~~~l~~l~~~aG  300 (348)
                      ++.+++|++++++...+|++++++|+|||.++|.|.+.....          .+|..    ...-.+|.++|.++|+++|
T Consensus       144 ~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AG  223 (244)
T d1fp1d2         144 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSG  223 (244)
T ss_dssp             EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTT
T ss_pred             EEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcC
Confidence            999999999999999999999999999999999886532210          01100    1112378999999999999


Q ss_pred             CeEEEEeec
Q 018970          301 LHIYKSKDQ  309 (348)
Q Consensus       301 f~~v~~~~~  309 (348)
                      |+.+++...
T Consensus       224 F~~v~v~~~  232 (244)
T d1fp1d2         224 FSKFQVACR  232 (244)
T ss_dssp             CSEEEEEEE
T ss_pred             CCceEEEec
Confidence            999887543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.45  E-value=1.3e-13  Score=120.34  Aligned_cols=97  Identities=21%  Similarity=0.140  Sum_probs=81.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|+++..|+.. ..+|+++|+++.+++.|++++..        ..++.+..+|......+.++||+|
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~--------~~nv~~~~~d~~~g~~~~~pfD~I  138 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSY--------YNNIKLILGDGTLGYEEEKPYDRV  138 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTT--------CSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             hcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhc--------ccccccccCchhhcchhhhhHHHH
Confidence            788999999999999999877755 45799999999999999998876        467999999976644445789999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      ++..++.++++        .+.+.|||||+|++.
T Consensus       139 iv~~a~~~ip~--------~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         139 VVWATAPTLLC--------KPYEQLKEGGIMILP  164 (224)
T ss_dssp             EESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred             HhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence            99999998872        356789999999985

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=7.1e-14  Score=128.51  Aligned_cols=105  Identities=18%  Similarity=0.146  Sum_probs=86.8

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      ++.+|||||||+|.++..+++.+...|+++|.|+.+ ..+++.+...++     ..++.+.+.|+.+++.+.++||+|++
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~-----~~~v~~~~~~~~~~~~~~~~~D~ivs  106 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKL-----DHVVTIIKGKVEEVELPVEKVDIIIS  106 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTC-----TTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCC-----ccccceEeccHHHcccccceeEEEee
Confidence            567899999999999998888787789999999754 566665544433     46799999999999887789999999


Q ss_pred             chhhhcCCh-hhHHHHHHHHHHcCCCCcEEEE
Q 018970          237 QWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       237 ~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      .+..+++.. ..+..++..+.++|||||.++-
T Consensus       107 ~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         107 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            877776654 3588999999999999999874

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.7e-14  Score=124.98  Aligned_cols=106  Identities=20%  Similarity=0.186  Sum_probs=84.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh-CCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      ++++.+|||||||+|+.+..++.. +.. .|+++|.++++++.|++++...++.+.. ..++.+..+|.....++.++||
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~-~~~~~~~~gD~~~~~~~~~~fD  152 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS-SGRVQLVVGDGRMGYAEEAPYD  152 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHH-TSSEEEEESCGGGCCGGGCCEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccccc-ccceEEEEeecccccchhhhhh
Confidence            578899999999999999888764 222 7999999999999999887643321111 2467888899877666668999


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++..+++++++        .+.+.|||||+|++..
T Consensus       153 ~I~~~~~~~~ip~--------~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         153 AIHVGAAAPVVPQ--------ALIDQLKPGGRLILPV  181 (224)
T ss_dssp             EEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred             hhhhhcchhhcCH--------HHHhhcCCCcEEEEEE
Confidence            9999999999872        4678899999999854

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.1e-13  Score=124.94  Aligned_cols=107  Identities=16%  Similarity=0.116  Sum_probs=86.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||||||+|.++..+++.+...|+++|.|+.|...+ +.....+.     ..++.+...|+.++..+..+||+|
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~-~~~~~~~~-----~~~i~~~~~~~~~l~~~~~~~D~I  106 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAM-DIIRLNKL-----EDTITLIKGKIEEVHLPVEKVDVI  106 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHH-HHHHHTTC-----TTTEEEEESCTTTSCCSCSCEEEE
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHH-HHHHHhCC-----CccceEEEeeHHHhcCccccceEE
Confidence            345779999999999999999888888899999999887544 33333222     467999999999998777899999


Q ss_pred             eechhhhcCChh-hHHHHHHHHHHcCCCCcEEEE
Q 018970          235 WVQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       235 i~~~~l~~~~~~-d~~~~l~~~~~~LkpgG~lii  267 (348)
                      ++.+..+++..+ .+..++..+.++|||||.++-
T Consensus       107 vse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         107 ISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             EECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             EEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            998877776643 467788888999999999874

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.43  E-value=2.9e-13  Score=116.51  Aligned_cols=105  Identities=16%  Similarity=0.195  Sum_probs=85.5

Q ss_pred             CcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeEEe
Q 018970          159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW  235 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~Ii  235 (348)
                      ..|||||||+|.++..++...++ .++|+|+++.++..|.+++...++      .|+.+..+|+.++.  ++++++|.|+
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l------~Ni~~~~~da~~l~~~~~~~~~~~i~  106 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSDLTDYFEDGEIDRLY  106 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc------ccceeeecCHHHHhhhccCCceehhc
Confidence            37999999999999999998877 799999999999999888765443      57999999988865  4568999999


Q ss_pred             echhhhcCChhh------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          236 VQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       236 ~~~~l~~~~~~d------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +...-.+.....      ...+++.+.++|||||.|++.+
T Consensus       107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            766544332211      1579999999999999998865

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.1e-13  Score=128.01  Aligned_cols=112  Identities=15%  Similarity=0.049  Sum_probs=86.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCC-------CCCCCcCCCcceeEEEcCCCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAP-------ENHMAPDMHKATNFFCVPLQDFTP  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~-------~~~~~~~~~~~i~~~~~d~~~~~~  226 (348)
                      ++++.+|||||||+|.++..++..... .++|+|+|+.|++.|+++...       .|..    ..++.|.++|+.+.+.
T Consensus       149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~----~~~i~~~~gd~~~~~~  224 (328)
T d1nw3a_         149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK----HAEYTLERGDFLSEEW  224 (328)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC----CCCEEEEECCTTSHHH
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc----CCceEEEECccccccc
Confidence            678899999999999999998876544 799999999999999876432       1110    2469999999988765


Q ss_pred             CCCc--eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC
Q 018970          227 ETGR--YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR  273 (348)
Q Consensus       227 ~~~~--fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~  273 (348)
                      .+..  .|+|+++ .+.|.+  ++...++++.+.|||||.+++.+....
T Consensus       225 ~~~~~~advi~~~-~~~f~~--~~~~~l~e~~r~LKpGg~iv~~~~~~~  270 (328)
T d1nw3a_         225 RERIANTSVIFVN-NFAFGP--EVDHQLKERFANMKEGGRIVSSKPFAP  270 (328)
T ss_dssp             HHHHHHCSEEEEC-CTTTCH--HHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred             ccccCcceEEEEc-ceecch--HHHHHHHHHHHhCCCCcEEEEecccCC
Confidence            4333  4677765 445555  788999999999999999998775543

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.42  E-value=2.9e-13  Score=119.80  Aligned_cols=138  Identities=14%  Similarity=0.241  Sum_probs=105.5

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ...+|||||||+|.++..++++++. ++++.|. |..++.+    ..        ..++++...|+.+-.   ..+|+++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~~--------~~rv~~~~gD~f~~~---p~aD~~~  143 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----SG--------SNNLTYVGGDMFTSI---PNADAVL  143 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----CC--------BTTEEEEECCTTTCC---CCCSEEE
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----cc--------cCceEEEecCcccCC---CCCcEEE
Confidence            3458999999999999999999887 8999997 4444322    11        467999999987632   2579999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCC---cEEEEEecccCCCc----------eecCC---CCceecCHHHHHHHHHhc
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPG---GFFVLKENIARSGF----------VLDKE---DRSITRSDFYFKELFSRC  299 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~Lkpg---G~lii~~~~~~~~~----------~~d~~---~~~~~~s~~~l~~l~~~a  299 (348)
                      +.++||++++++...+|+++++.|+||   |.++|.+.......          .++..   ...-.+|.++|.++|+++
T Consensus       144 l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~A  223 (244)
T d1fp2a2         144 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEA  223 (244)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHT
T ss_pred             EEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHc
Confidence            999999999999999999999999998   78888875543211          01110   112237899999999999


Q ss_pred             CCeEEEEeecC
Q 018970          300 GLHIYKSKDQK  310 (348)
Q Consensus       300 Gf~~v~~~~~~  310 (348)
                      ||++++.....
T Consensus       224 Gf~~~~i~~~~  234 (244)
T d1fp2a2         224 GFQHYKISPLT  234 (244)
T ss_dssp             TCCEEEEEEEE
T ss_pred             CCceEEEEECC
Confidence            99999876543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=6.1e-13  Score=119.30  Aligned_cols=130  Identities=17%  Similarity=0.180  Sum_probs=99.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..+.+|||+|||+|.++..++...+. .|+++|+|+.+++.|++++...++      .++++...|+.+.. ..++||+|
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~------~~v~~~~~d~~~~~-~~~~fDlI  179 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------KNIHILQSDWFSAL-AGQQFAMI  179 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCSTTGGG-TTCCEEEE
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc------ccceeeeccccccc-CCCceeEE
Confidence            45678999999999999999988766 899999999999999999876533      36899999987632 34689999


Q ss_pred             eechhhhcC-------------Ch----------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970          235 WVQWCIGHL-------------TD----------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY  291 (348)
Q Consensus       235 i~~~~l~~~-------------~~----------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~  291 (348)
                      +++...-..             +.          +.+..+++.+.++|+|||.+++--..               ...+.
T Consensus       180 vsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~---------------~q~~~  244 (274)
T d2b3ta1         180 VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW---------------QQGEA  244 (274)
T ss_dssp             EECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS---------------SCHHH
T ss_pred             EecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc---------------hHHHH
Confidence            998543211             10          12567889999999999999884211               12356


Q ss_pred             HHHHHHhcCCeEEEEe
Q 018970          292 FKELFSRCGLHIYKSK  307 (348)
Q Consensus       292 l~~l~~~aGf~~v~~~  307 (348)
                      +.+++++.||..++..
T Consensus       245 v~~~l~~~gf~~i~~~  260 (274)
T d2b3ta1         245 VRQAFILAGYHDVETC  260 (274)
T ss_dssp             HHHHHHHTTCTTCCEE
T ss_pred             HHHHHHHCCCCeEEEE
Confidence            8899999999865533

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.7e-12  Score=117.80  Aligned_cols=109  Identities=17%  Similarity=0.116  Sum_probs=82.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCC-----CCcCCCcceeEEEcCCCCCC--
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENH-----MAPDMHKATNFFCVPLQDFT--  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~-----~~~~~~~~i~~~~~d~~~~~--  225 (348)
                      +.++.+|||+|||+|.++..|+... +. .|+++|+++.+++.|++++...+.     .......++++...|+.+..  
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~  175 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  175 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence            7899999999999999999998763 33 799999999999999998753210     00112467999999988764  


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      .+...||.|++     +++  ++..++.++.++|||||.|++..+
T Consensus       176 ~~~~~fD~V~L-----D~p--~P~~~l~~~~~~LKpGG~lv~~~P  213 (324)
T d2b25a1         176 IKSLTFDAVAL-----DML--NPHVTLPVFYPHLKHGGVCAVYVV  213 (324)
T ss_dssp             -----EEEEEE-----CSS--STTTTHHHHGGGEEEEEEEEEEES
T ss_pred             cCCCCcceEee-----cCc--CHHHHHHHHHHhccCCCEEEEEeC
Confidence            34568999986     455  455789999999999999988653

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.33  E-value=1.8e-12  Score=114.50  Aligned_cols=136  Identities=15%  Similarity=0.238  Sum_probs=103.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ...+|||||||+|.++..+++++++ +++++|..+ .++.+    .        ...++.+...|+.+-. +  ..|+++
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~----~--------~~~r~~~~~~d~~~~~-P--~ad~~~  144 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDA----P--------SYPGVEHVGGDMFVSI-P--KADAVF  144 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTC----C--------CCTTEEEEECCTTTCC-C--CCSCEE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhc----c--------cCCceEEecccccccC-C--CcceEE
Confidence            3568999999999999999999887 899999743 33211    1        1457999999986632 2  358889


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc----------eecC-----CCCceecCHHHHHHHHHhcC
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF----------VLDK-----EDRSITRSDFYFKELFSRCG  300 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~----------~~d~-----~~~~~~~s~~~l~~l~~~aG  300 (348)
                      +.+++|+.++++...+|++++++|+|||.++|.+.......          .++.     ......++.++|.++|+++|
T Consensus       145 l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AG  224 (243)
T d1kyza2         145 MKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAG  224 (243)
T ss_dssp             CSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHC
T ss_pred             EEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcC
Confidence            99999999999999999999999999999999876532111          0111     11223378999999999999


Q ss_pred             CeEEEEee
Q 018970          301 LHIYKSKD  308 (348)
Q Consensus       301 f~~v~~~~  308 (348)
                      |+.++...
T Consensus       225 f~~vkv~~  232 (243)
T d1kyza2         225 FQGFKVHC  232 (243)
T ss_dssp             CSCEEEEE
T ss_pred             CCcEEEEE
Confidence            99887653

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.33  E-value=5e-12  Score=112.66  Aligned_cols=131  Identities=15%  Similarity=0.150  Sum_probs=101.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      ..++.+|||+|||+|.++..++.++..+|+++|+|+.+++.+++++...++     ..+++++++|+.++... +.||.|
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l-----~~~v~~~~~D~~~~~~~-~~~D~I  178 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFPGE-NIADRI  178 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCCCC-SCEEEE
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCC-----CceEEEEEcchHHhccC-CCCCEE
Confidence            357789999999999999999988766899999999999999999877655     45699999999988755 789999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK  305 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~  305 (348)
                      ++....      ....++..+.++|+|||++.+.+......        ......+.+.++.+..|+++..
T Consensus       179 i~~~p~------~~~~~l~~a~~~l~~gG~lh~~~~~~~~~--------~~~~~~e~~~~~~~~~g~~v~~  235 (260)
T d2frna1         179 LMGYVV------RTHEFIPKALSIAKDGAIIHYHNTVPEKL--------MPREPFETFKRITKEYGYDVEK  235 (260)
T ss_dssp             EECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG--------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred             EECCCC------chHHHHHHHHhhcCCCCEEEEEecccccc--------chhhHHHHHHHHHHHcCCceEE
Confidence            976432      22357788889999999997765432111        1112345677888899998754

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.30  E-value=2.4e-12  Score=111.39  Aligned_cols=101  Identities=19%  Similarity=0.194  Sum_probs=84.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|+.+..++......|+++|.++.+++.|++++...++      .|+.+.++|..+-....+.||.|
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~------~nv~~~~gd~~~g~~~~~pfD~I  149 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV------KNVHVILGDGSKGFPPKAPYDVI  149 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEE
T ss_pred             cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC------ceeEEEECccccCCcccCcceeE
Confidence            788899999999999999977754333599999999999999999876543      68999999988755556899999


Q ss_pred             eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ++..++.+++  +      .+.+.|+|||++++..
T Consensus       150 iv~~a~~~ip--~------~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         150 IVTAGAPKIP--E------PLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             EECSBBSSCC--H------HHHHTEEEEEEEEEEE
T ss_pred             EeecccccCC--H------HHHHhcCCCCEEEEEE
Confidence            9999999888  2      3566799999998854

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=3.9e-12  Score=117.09  Aligned_cols=111  Identities=13%  Similarity=0.057  Sum_probs=87.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~f  231 (348)
                      .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...|+     ..++++.+.|+.++.    ....+|
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl-----~~~~~~~~~d~~~~~~~~~~~~~~f  218 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----EDRMKFIVGSAFEEMEKLQKKGEKF  218 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCC-----CccceeeechhhhhhHHHHhccCCC
Confidence            56789999999999999999888877899999999999999999887655     457889999876532    234689


Q ss_pred             eEEeechhhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          232 DVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       232 D~Ii~~~~l~~~~~-------~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      |+|++......-..       .+...++..+.++|+|||+|++....
T Consensus       219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            99998544322211       13566888999999999999988643

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=1.8e-12  Score=122.01  Aligned_cols=115  Identities=14%  Similarity=0.023  Sum_probs=79.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCC----CCcCCCcceeE-EEcCCCCCCC--
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENH----MAPDMHKATNF-FCVPLQDFTP--  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~----~~~~~~~~i~~-~~~d~~~~~~--  226 (348)
                      ++++.+|||||||+|.++..++.... .+|+|+|+|+.|++.|+++....+.    .... .....+ ...++.+.+.  
T Consensus       214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~-~~~~~~~~~~~f~~~~~~d  292 (406)
T d1u2za_         214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNNVEFSLKKSFVDNNRVA  292 (406)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCCEEEEESSCSTTCHHHH
T ss_pred             CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccc-cccceeeeeechhhccccc
Confidence            78899999999999999999987754 4799999999999999987642100    0000 011222 2233332211  


Q ss_pred             -CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC
Q 018970          227 -ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR  273 (348)
Q Consensus       227 -~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~  273 (348)
                       .-..+|+|+++. ++|.+  ++...|+++.+.|||||.|++.+....
T Consensus       293 ~~~~~adVV~inn-~~f~~--~l~~~L~ei~r~LKPGGrIVs~~~~~~  337 (406)
T d1u2za_         293 ELIPQCDVILVNN-FLFDE--DLNKKVEKILQTAKVGCKIISLKSLRS  337 (406)
T ss_dssp             HHGGGCSEEEECC-TTCCH--HHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred             cccccceEEEEec-ccCch--HHHHHHHHHHHhcCCCcEEEEecccCC
Confidence             013568888754 44544  788999999999999999998875543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.21  E-value=3.2e-12  Score=104.80  Aligned_cols=105  Identities=13%  Similarity=0.121  Sum_probs=83.0

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CCCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~Ii  235 (348)
                      .+.+|||+|||+|.++...+.++..+|+++|.++.+++.+++++...+.     ..++++++.|+..+ ....++||+|+
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~-----~~~~~ii~~D~~~~l~~~~~~fDiIf   88 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKMEAERAIDCLTGRFDLVF   88 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhccc-----ccchhhhcccccccccccccccceeE
Confidence            4679999999999999999889888999999999999999999876544     45689999988764 23347899999


Q ss_pred             echhhhcCChhhHHHHHHHHH--HcCCCCcEEEEEe
Q 018970          236 VQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKE  269 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~--~~LkpgG~lii~~  269 (348)
                      +...+..   ......+..+.  ++|+|||.+++..
T Consensus        89 ~DPPy~~---~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          89 LDPPYAK---ETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             ECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             echhhcc---chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence            9765432   23445566554  5799999998854

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.18  E-value=8.8e-11  Score=99.82  Aligned_cols=114  Identities=15%  Similarity=0.156  Sum_probs=79.9

Q ss_pred             CCCCcEEEEeccccHH----HHHHHHhCC----C-cEEEEcCCHHHHHHHHHHh------------------CCCCCCC-
Q 018970          156 NQHLVALDCGSGIGRI----TKNLLIRYF----N-EVDLLEPVSHFLDAARESL------------------APENHMA-  207 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~----~~~la~~~~----~-~v~~vD~S~~~l~~a~~~~------------------~~~~~~~-  207 (348)
                      .++.+|+++|||+|.-    +..+.+...    . +++++|+|+.+++.|++..                  ...+... 
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            4567999999999973    333333211    1 6999999999999998521                  1110000 


Q ss_pred             ------cCCCcceeEEEcCCCCCC-CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          208 ------PDMHKATNFFCVPLQDFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       208 ------~~~~~~i~~~~~d~~~~~-~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                            ......+.+...++.... ...+.||+|+|.++|.+++++....++++++++|+|||+|++..
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~  171 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  171 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence                  001123455656555433 33478999999999999998888999999999999999999863

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.18  E-value=2.3e-12  Score=112.26  Aligned_cols=106  Identities=16%  Similarity=0.138  Sum_probs=80.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHh----CC---CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIR----YF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~----~~---~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  227 (348)
                      +.++.+|||||||+|+.+..++..    +.   .+|+++|.++++++.|++++...++.... ..++.+...|..+...+
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~-~~nv~~~~~d~~~~~~~  156 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLD-SGQLLIVEGDGRKGYPP  156 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHH-HTSEEEEESCGGGCCGG
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcC-ccEEEEEeccccccccc
Confidence            578899999999999998877643    11   26999999999999998875421100000 14688999998776555


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+.||.|++..++.+++  +      .+.+.|||||++++..
T Consensus       157 ~~~fD~Iiv~~a~~~~p--~------~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         157 NAPYNAIHVGAAAPDTP--T------ELINQLASGGRLIVPV  190 (223)
T ss_dssp             GCSEEEEEECSCBSSCC--H------HHHHTEEEEEEEEEEE
T ss_pred             ccceeeEEEEeechhch--H------HHHHhcCCCcEEEEEE
Confidence            67999999999999888  2      3678999999998854

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.16  E-value=1.4e-11  Score=112.94  Aligned_cols=108  Identities=20%  Similarity=0.131  Sum_probs=83.1

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC----CCCCCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~f  231 (348)
                      .++.+|||++||+|.++.+++. +..+|+++|+|+.+++.|++++...|+      .++++.+.|..++    ....++|
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl------~~~~~i~~d~~~~~~~~~~~~~~f  216 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEKEGERF  216 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCC------CCcceeeccHHHHhhhhHhhhcCC
Confidence            3568999999999999998874 445799999999999999999877654      3688899987663    2334689


Q ss_pred             eEEeechhhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          232 DVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       232 D~Ii~~~~l~~~~~-------~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                      |+|++...-.....       .+...++..+.++|+|||.|++...
T Consensus       217 D~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         217 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99998543221111       1355788899999999999988764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.14  E-value=1e-10  Score=99.38  Aligned_cols=86  Identities=17%  Similarity=0.306  Sum_probs=66.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      .+.+|||+|||+|.++..++..+...|+++|+++.+++.|++++.           ++++.+.|+.+++   ++||+|++
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~-----------~~~~~~~D~~~l~---~~fD~Vi~  113 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVSEIS---GKYDTWIM  113 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGGGCC---CCEEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc-----------cccEEEEehhhcC---CcceEEEe
Confidence            467999999999999988887787789999999999999999864           4789999998765   78999999


Q ss_pred             chhhhcCCh-hhHHHHHHHHHH
Q 018970          237 QWCIGHLTD-DDFVSFFKRAKV  257 (348)
Q Consensus       237 ~~~l~~~~~-~d~~~~l~~~~~  257 (348)
                      +..+..... .| ..+++.+..
T Consensus       114 NPPfg~~~~~~D-~~fl~~a~~  134 (197)
T d1ne2a_         114 NPPFGSVVKHSD-RAFIDKAFE  134 (197)
T ss_dssp             CCCC-------C-HHHHHHHHH
T ss_pred             Ccccchhhhhch-HHHHHHHHh
Confidence            877642221 12 345555443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.12  E-value=2.8e-10  Score=97.28  Aligned_cols=124  Identities=16%  Similarity=0.143  Sum_probs=87.0

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      .+.+|||+|||+|.++..++.++...|+++|+|+.+++.+++++...       ....++...|...+.   +.||+|++
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~-------~~~~~~~~~d~~~~~---~~fD~Vi~  115 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF-------KGKFKVFIGDVSEFN---SRVDIVIM  115 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG-------TTSEEEEESCGGGCC---CCCSEEEE
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHc-------CCCceEEECchhhhC---CcCcEEEE
Confidence            56799999999999999888887778999999999999999998764       346788888887764   67999999


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS  306 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~  306 (348)
                      +..+.......-..++.....   +++.++.......             .....+..+....|+.+...
T Consensus       116 nPP~~~~~~~~d~~~l~~~~~---~~~~v~~ih~~~~-------------~~~~~i~~~~~~~g~~i~~~  169 (201)
T d1wy7a1         116 NPPFGSQRKHADRPFLLKAFE---ISDVVYSIHLAKP-------------EVRRFIEKFSWEHGFVVTHR  169 (201)
T ss_dssp             CCCCSSSSTTTTHHHHHHHHH---HCSEEEEEEECCH-------------HHHHHHHHHHHHTTEEEEEE
T ss_pred             cCccccccccccHHHHHHHHh---hcccchhcccchH-------------HHHHHHHHHHhhcCceEEEE
Confidence            888765432111234444433   3444433321110             12345677788889876553

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.09  E-value=9.7e-11  Score=106.11  Aligned_cols=124  Identities=15%  Similarity=0.104  Sum_probs=89.5

Q ss_pred             hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce
Q 018970          135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT  214 (348)
Q Consensus       135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i  214 (348)
                      ......++...+..      ..++.+|||+.||+|.++..++..+. +|++||.|+.+++.|++++...++.    ..++
T Consensus       116 qr~nr~~~~~~~~~------~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~----~~~~  184 (309)
T d2igta1         116 QIVHWEWLKNAVET------ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLE----QAPI  184 (309)
T ss_dssp             GHHHHHHHHHHHHH------SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCT----TSCE
T ss_pred             hhHHHHHHHHHHhh------ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhccc----CCcE
Confidence            34445666666543      35577999999999999999987776 6999999999999999987654331    2358


Q ss_pred             eEEEcCCCCCC----CCCCceeEEeechh-hhcCC-------hhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          215 NFFCVPLQDFT----PETGRYDVIWVQWC-IGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       215 ~~~~~d~~~~~----~~~~~fD~Ii~~~~-l~~~~-------~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++.|+.++-    ....+||+|++... +..-+       .++...+++.+.++|+|||.+++..
T Consensus       185 ~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         185 RWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             EEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             EEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            89999987642    12368999998432 11110       1345667788999999999766654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.07  E-value=6.9e-11  Score=108.07  Aligned_cols=136  Identities=10%  Similarity=0.066  Sum_probs=98.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~f  231 (348)
                      .++.+|||+.||+|.++..++..+..+|+++|+|+.+++.+++++...++.    ..++++++.|+.++-    ....+|
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~----~~~~~~i~~d~~~~l~~~~~~~~~f  218 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD----MANHQLVVMDVFDYFKYARRHHLTY  218 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC----CTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc----CcceEEEEccHHHHHHHHHhhcCCC
Confidence            457899999999999999888777778999999999999999998755441    246889999986542    234689


Q ss_pred             eEEeechh-hh----cCCh--hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHH----HHHHHhcC
Q 018970          232 DVIWVQWC-IG----HLTD--DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYF----KELFSRCG  300 (348)
Q Consensus       232 D~Ii~~~~-l~----~~~~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l----~~l~~~aG  300 (348)
                      |+|++... +.    ....  .+...+++.+.++|+|||+|+++.+...             .+.+.+    .+.+.++|
T Consensus       219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~-------------~~~~~f~~~v~~a~~~~~  285 (317)
T d2b78a2         219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN-------------MTVSQFKKQIEKGFGKQK  285 (317)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT-------------SCHHHHHHHHHHHHTTCC
T ss_pred             CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-------------CCHHHHHHHHHHHHHHcC
Confidence            99998533 11    1111  2567899999999999999999764321             233444    44556678


Q ss_pred             CeEEEEee
Q 018970          301 LHIYKSKD  308 (348)
Q Consensus       301 f~~v~~~~  308 (348)
                      ..+.....
T Consensus       286 ~~~~~~~~  293 (317)
T d2b78a2         286 HTYLDLQQ  293 (317)
T ss_dssp             CEEEEEEC
T ss_pred             CeEEEecc
Confidence            87766543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.8e-09  Score=95.27  Aligned_cols=133  Identities=13%  Similarity=-0.035  Sum_probs=89.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------CCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET  228 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~  228 (348)
                      .+..+|||+|||+|.++..|+.+.+. .++++|+|+.+++.|++++...++     ..++.+...+..+..      ...
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l-----~~~~~~~~~~~~~~~~~~~~~~~~  134 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----SDLIKVVKVPQKTLLMDALKEESE  134 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTCSSTTTSTTCCS
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC-----CcceeeeeeccHHhhhhhhhhccc
Confidence            44568999999999999999887655 799999999999999999877554     455666665443321      224


Q ss_pred             CceeEEeechhhhcCChh---------------------------------hHHHHHHHHHHcCCCCcEEEEEecccCCC
Q 018970          229 GRYDVIWVQWCIGHLTDD---------------------------------DFVSFFKRAKVGLKPGGFFVLKENIARSG  275 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~~~~---------------------------------d~~~~l~~~~~~LkpgG~lii~~~~~~~~  275 (348)
                      ++||+|+|+..++.-.++                                 .+..++++....++..|++......    
T Consensus       135 ~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~----  210 (250)
T d2h00a1         135 IIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGK----  210 (250)
T ss_dssp             CCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESS----
T ss_pred             CceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecc----
Confidence            689999999887743211                                 1233444445556666655432211    


Q ss_pred             ceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          276 FVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       276 ~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                                .-+.+.+.+++++.|+.-+...
T Consensus       211 ----------~~~l~~i~~~L~~~g~~~i~~i  232 (250)
T d2h00a1         211 ----------KCSLAPLKEELRIQGVPKVTYT  232 (250)
T ss_dssp             ----------TTSHHHHHHHHHHTTCSEEEEE
T ss_pred             ----------hhhHHHHHHHHHHcCCCeEEEE
Confidence                      0245678899999999766544

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.02  E-value=1.9e-10  Score=97.51  Aligned_cols=108  Identities=22%  Similarity=0.314  Sum_probs=84.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET  228 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~  228 (348)
                      +.++..+||++||+|..+..+++..+. .|+++|.++.|++.|++++...       ..++.+...++.++.     ...
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-------~~r~~~~~~~f~~~~~~~~~~~~   93 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------SDRVSLFKVSYREADFLLKTLGI   93 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-------TTTEEEEECCGGGHHHHHHHTTC
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-------cccccchhHHHhhHHHHHHHcCC
Confidence            578889999999999999999988654 8999999999999999988653       456889998876643     234


Q ss_pred             CceeEEeechhhh--cCC-----hhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          229 GRYDVIWVQWCIG--HLT-----DDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       229 ~~fD~Ii~~~~l~--~~~-----~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ++||.|+.-..+.  ++.     -......+..+.++|+|||.+++..
T Consensus        94 ~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          94 EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence            6899997643221  111     0246788999999999999998876

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.01  E-value=8.1e-11  Score=98.12  Aligned_cols=103  Identities=17%  Similarity=0.231  Sum_probs=72.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC----CCCCCc
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGR  230 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~  230 (348)
                      ..++.+|||+|||+|.++...+.++. +++++|.|+.+++.+++++...++     .  ..+...+...+    .....+
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~-----~--~~v~~~~~d~~~~~~~~~~~~  110 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL-----G--ARVVALPVEVFLPEAKAQGER  110 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC-----C--CEEECSCHHHHHHHHHHTTCC
T ss_pred             ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhcc-----c--cceeeeehhcccccccccCCc
Confidence            34677999999999999999888877 599999999999999999876433     2  23333333221    123468


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHH--HHcCCCCcEEEEEe
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRA--KVGLKPGGFFVLKE  269 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~--~~~LkpgG~lii~~  269 (348)
                      ||+|++...++. .   ....+..+  ..+|+|||++++..
T Consensus       111 fD~If~DPPY~~-~---~~~~l~~l~~~~ll~~~g~ivie~  147 (171)
T d1ws6a1         111 FTVAFMAPPYAM-D---LAALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             EEEEEECCCTTS-C---TTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred             cceeEEcccccc-C---HHHHHHHHHHcCCcCCCeEEEEEe
Confidence            999999776553 2   12233333  35799999988754

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=8.6e-10  Score=95.32  Aligned_cols=117  Identities=20%  Similarity=0.192  Sum_probs=89.3

Q ss_pred             HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeE
Q 018970          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (348)
Q Consensus       139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~  216 (348)
                      -.+|..+..       ..++.+|||||||+|+.+.+++.....  +|+.+|.++...+.|++++...|+     ..++++
T Consensus        48 g~lL~~L~~-------~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~-----~~~i~~  115 (219)
T d2avda1          48 AQLLANLAR-------LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDL  115 (219)
T ss_dssp             HHHHHHHHH-------HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEE
T ss_pred             HHHHHHHHH-------ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc-----cceEEE
Confidence            345555554       245679999999999999999866442  899999999999999999877655     567999


Q ss_pred             EEcCCCCCC------CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970          217 FCVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA  272 (348)
Q Consensus       217 ~~~d~~~~~------~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  272 (348)
                      ..+|+.+..      ...++||+|+...-    . +....++..+.+.|+|||.+++-....
T Consensus       116 ~~Gda~e~l~~~~~~~~~~~fD~ifiD~d----k-~~y~~~~~~~~~lL~~GGvii~Dn~l~  172 (219)
T d2avda1         116 RLKPALETLDELLAAGEAGTFDVAVVDAD----K-ENCSAYYERCLQLLRPGGILAVLRVLW  172 (219)
T ss_dssp             EESCHHHHHHHHHHTTCTTCEEEEEECSC----S-TTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             EEeehhhcchhhhhhcccCCccEEEEeCC----H-HHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence            998865421      22468999997432    2 356788899999999999998865443

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=5e-10  Score=94.24  Aligned_cols=104  Identities=14%  Similarity=0.125  Sum_probs=81.4

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~Ii  235 (348)
                      .+.+|||++||+|.++...+.+++..|+.||.++.+++.+++++...+.      .++.+...|+.++. .....||+|+
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~------~~~~ii~~d~~~~l~~~~~~fDlIf  116 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNAMSFLAQKGTPHNIVF  116 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc------cceeeeeecccccccccccccCEEE
Confidence            3468999999999999999999999999999999999999998765322      35777888776542 3346899999


Q ss_pred             echhhhcCChhhHHHHHHHHHH--cCCCCcEEEEEe
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKE  269 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~--~LkpgG~lii~~  269 (348)
                      +......   ......+..+.+  +|+|+|++++..
T Consensus       117 ~DPPY~~---~~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         117 VDPPFRR---GLLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             ECCSSST---TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             EcCcccc---chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            9877553   235566666655  699999988853

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=4.3e-10  Score=96.98  Aligned_cols=115  Identities=9%  Similarity=0.086  Sum_probs=83.4

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEE
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF  217 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~  217 (348)
                      .+|..++..       .++.+|||+|||+|..+..++.....  +|+++|.++.+++.|++++...|+     ..+++++
T Consensus        46 ~lL~~lv~~-------~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl-----~~~i~l~  113 (214)
T d2cl5a1          46 QIMDAVIRE-------YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL-----QDKVTIL  113 (214)
T ss_dssp             HHHHHHHHH-------HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEE
T ss_pred             HHHHHHHHh-------hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC-----Cccceee
Confidence            566666653       34579999999999999999865432  799999999999999998876554     5679999


Q ss_pred             EcCCCCCC------CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          218 CVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       218 ~~d~~~~~------~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+|..+.-      ...+.||+|++-..-..   ......+.++.++|+|||++++-+
T Consensus       114 ~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~---~~~~~~l~~~~~lLkpGGvIv~Dd  168 (214)
T d2cl5a1         114 NGASQDLIPQLKKKYDVDTLDMVFLDHWKDR---YLPDTLLLEKCGLLRKGTVLLADN  168 (214)
T ss_dssp             ESCHHHHGGGHHHHSCCCCEEEEEECSCGGG---HHHHHHHHHHTTCEEEEEEEEESC
T ss_pred             eccccccccchhhcccccccceeeecccccc---cccHHHHHHHhCccCCCcEEEEeC
Confidence            99876531      22367999997532111   012234677788999999865543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.89  E-value=6e-10  Score=93.62  Aligned_cols=105  Identities=16%  Similarity=0.111  Sum_probs=83.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~f  231 (348)
                      -.+.+|||+.||+|.++...+.++...|+++|.++.+++.+++++...+.     ..++++.+.|+.++-    .....|
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~-----~~~~~i~~~D~~~~l~~~~~~~~~f  114 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----PEKFEVRKMDANRALEQFYEEKLQF  114 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhc-----ccccccccccchhhhhhhcccCCCc
Confidence            35789999999999999999999998999999999999999998764332     457899999986532    233589


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHH--cCCCCcEEEEE
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLK  268 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~--~LkpgG~lii~  268 (348)
                      |+|++......   .+....+..+..  +|+|+|++++.
T Consensus       115 DlIflDPPY~~---~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         115 DLVLLDPPYAK---QEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             EEEEECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ceEEechhhhh---hHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            99999876542   245677777754  69999988874

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.83  E-value=3e-09  Score=92.27  Aligned_cols=123  Identities=18%  Similarity=0.212  Sum_probs=92.2

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEE
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF  217 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~  217 (348)
                      .+|..++..       .++.+|||||+++|+.+.+++...+.  .|+.+|.++...+.|++++...|+     ..+++++
T Consensus        49 ~~L~~L~~~-------~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~-----~~~i~~~  116 (227)
T d1susa1          49 QFLSMLLKL-------INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFR  116 (227)
T ss_dssp             HHHHHHHHH-------HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEE
T ss_pred             HHHHHHHHh-------cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc-----ccceeee
Confidence            455555542       34579999999999999999976543  899999999999999999987665     5679999


Q ss_pred             EcCCCCCC-------CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC
Q 018970          218 CVPLQDFT-------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK  280 (348)
Q Consensus       218 ~~d~~~~~-------~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~  280 (348)
                      .+++.+.-       ...++||+|+.-.-    . .....+++.+.+.|+|||.|++-.... .+.+.++
T Consensus       117 ~g~a~~~L~~l~~~~~~~~~fD~iFiDa~----k-~~y~~~~e~~~~ll~~gGiii~DNvl~-~G~v~~~  180 (227)
T d1susa1         117 EGPALPVLDEMIKDEKNHGSYDFIFVDAD----K-DNYLNYHKRLIDLVKVGGVIGYDNTLW-NGSVVAP  180 (227)
T ss_dssp             ESCHHHHHHHHHHCGGGTTCBSEEEECSC----S-TTHHHHHHHHHHHBCTTCCEEEETTTG-GGGGGCC
T ss_pred             ehHHHHHHHHHHhccccCCceeEEEeccc----h-hhhHHHHHHHHhhcCCCcEEEEccCCC-CCcccCC
Confidence            99886531       12368999997432    1 357789999999999999988765433 3433333

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=3.7e-09  Score=94.00  Aligned_cols=125  Identities=12%  Similarity=-0.006  Sum_probs=85.3

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~Ii  235 (348)
                      +..+|||+|||+|..+..++......|+++|+|+.+++.|++++...++     ..++.+...|+.+.. ...++||+|+
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~-----~~~~~i~~~~~~~~~~~~~~~fDlIV  184 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-----SDRFFVRKGEFLEPFKEKFASIEMIL  184 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTSEEEEESSTTGGGGGGTTTCCEEE
T ss_pred             cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCC-----CceeEEeecccccccccccCcccEEE
Confidence            3458999999999999988755434899999999999999999876544     446778888877643 2236899999


Q ss_pred             echhhh-----------cCC------hhhHHHHHHH-HHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHH
Q 018970          236 VQWCIG-----------HLT------DDDFVSFFKR-AKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFS  297 (348)
Q Consensus       236 ~~~~l~-----------~~~------~~d~~~~l~~-~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~  297 (348)
                      ++...-           |=|      .+|...++++ +.+.|+|||++++-....               ..+.+.++|+
T Consensus       185 sNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~---------------Q~~~v~~l~~  249 (271)
T d1nv8a_         185 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED---------------QVEELKKIVS  249 (271)
T ss_dssp             ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT---------------CHHHHTTTST
T ss_pred             EcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHH---------------HHHHHHHHHH
Confidence            984311           000      0111123322 567899999887754221               1345667777


Q ss_pred             hcCC
Q 018970          298 RCGL  301 (348)
Q Consensus       298 ~aGf  301 (348)
                      +.||
T Consensus       250 ~~g~  253 (271)
T d1nv8a_         250 DTVF  253 (271)
T ss_dssp             TCEE
T ss_pred             hCCE
Confidence            7776

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.76  E-value=2.6e-09  Score=95.50  Aligned_cols=114  Identities=16%  Similarity=0.171  Sum_probs=81.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCC----CcCCCcceeEEEcCCCCCCCCCCce
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM----APDMHKATNFFCVPLQDFTPETGRY  231 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~----~~~~~~~i~~~~~d~~~~~~~~~~f  231 (348)
                      +++.+||.||+|.|..+..++.....+|+++|+++.+++.|++.+.-....    ......+++++..|...+....++|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            566799999999999999988665558999999999999999877532100    0011357889998886654334789


Q ss_pred             eEEeechhhhcCChhh--HHHHHHHHHHcCCCCcEEEEEe
Q 018970          232 DVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d--~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |+|++-..-..-+...  -..+++.+.+.|+|||++++..
T Consensus       151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            9999633211111011  2579999999999999988753

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.71  E-value=4.7e-08  Score=89.18  Aligned_cols=165  Identities=14%  Similarity=0.138  Sum_probs=101.9

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhC----CC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcc
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY----FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKA  213 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~----~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~  213 (348)
                      .++..++...+.   .+++.+|||.|||+|.++..++.+.    ..  .++|+|+++.++..|+.+....       ...
T Consensus       103 ~~m~~l~~~~~~---~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~-------~~~  172 (328)
T d2f8la1         103 FIVAYLLEKVIQ---KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-------RQK  172 (328)
T ss_dssp             HHHHHHHHHHHT---TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-------TCC
T ss_pred             HHHHHHHHHHhC---CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh-------hhh
Confidence            344444443333   4566799999999999998876541    11  6999999999999998765432       234


Q ss_pred             eeEEEcCCCCCCCCCCceeEEeechhhhcCChhh----------------HHHHHHHHHHcCCCCcEEEEEecccCCCce
Q 018970          214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD----------------FVSFFKRAKVGLKPGGFFVLKENIARSGFV  277 (348)
Q Consensus       214 i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d----------------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~  277 (348)
                      ..+...|...... ..+||+|+++..+......+                ...++..+.+.|+|||++++.-+..   +.
T Consensus       173 ~~~~~~d~~~~~~-~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~---~l  248 (328)
T d2f8la1         173 MTLLHQDGLANLL-VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA---MF  248 (328)
T ss_dssp             CEEEESCTTSCCC-CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG---GG
T ss_pred             hhhhccccccccc-cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc---cc
Confidence            5566666554433 36899999998765332111                2347999999999999887764321   11


Q ss_pred             ecCCCCceecCHHHHHHHHHhcCCeEEEEee--cCCCCccceEEEEEEEee
Q 018970          278 LDKEDRSITRSDFYFKELFSRCGLHIYKSKD--QKGLPEELFAVKMYALTA  326 (348)
Q Consensus       278 ~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~--~~~~~~~l~~v~~~~l~~  326 (348)
                      .       ..+...+++.+.+.+ .+.....  ..-|.....+..++.++.
T Consensus       249 ~-------~~~~~~lR~~L~~~~-~i~~ii~lp~~~F~~~~~~t~ilvl~K  291 (328)
T d2f8la1         249 G-------TSDFAKVDKFIKKNG-HIEGIIKLPETLFKSEQARKSILILEK  291 (328)
T ss_dssp             G-------STTHHHHHHHHHHHE-EEEEEEECCGGGSCC-CCCEEEEEEEE
T ss_pred             c-------CchhHHHHHHHHhCC-cEEEEEECCccccCCCCCCeEEEEEEC
Confidence            1       123455666555543 3333322  233544445566666653

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.64  E-value=4.9e-08  Score=84.91  Aligned_cols=78  Identities=19%  Similarity=0.183  Sum_probs=63.8

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.+|..|++... .|+++|+++.+++.+++++..        ..+++++.+|+.+++.+......|
T Consensus        19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~--------~~n~~i~~~D~l~~~~~~~~~~~v   89 (235)
T d1qama_          19 LNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVD--------HDNFQVLNKDILQFKFPKNQSYKI   89 (235)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTT--------CCSEEEECCCGGGCCCCSSCCCEE
T ss_pred             CCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhc--------ccchhhhhhhhhhcccccccccee
Confidence            67889999999999999999997755 699999999999999998876        468999999999987654444455


Q ss_pred             eechhhh
Q 018970          235 WVQWCIG  241 (348)
Q Consensus       235 i~~~~l~  241 (348)
                      +++-..+
T Consensus        90 v~NLPYn   96 (235)
T d1qama_          90 FGNIPYN   96 (235)
T ss_dssp             EEECCGG
T ss_pred             eeeehhh
Confidence            5554443

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.58  E-value=4e-08  Score=82.24  Aligned_cols=106  Identities=15%  Similarity=0.126  Sum_probs=79.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC---CCCCCCceeE
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FTPETGRYDV  233 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~fD~  233 (348)
                      .+.+|||+-||+|.++...+.+|...|+.||.+...++..++++...+..    .....+...|..+   .......||+
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~----~~~~~~~~~d~~~~l~~~~~~~~fDl  118 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----SEQAEVINQSSLDFLKQPQNQPHFDV  118 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----TTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccc----ccccccccccccccccccccCCcccE
Confidence            34689999999999999999999999999999999999999987654321    1234555555333   2223357999


Q ss_pred             EeechhhhcCChhhHHHHHHHHHH--cCCCCcEEEEEe
Q 018970          234 IWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~~d~~~~l~~~~~--~LkpgG~lii~~  269 (348)
                      |++-..... .  .....+..+..  +|+++|++++-.
T Consensus       119 IFlDPPY~~-~--~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         119 VFLDPPFHF-N--LAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             EEECCCSSS-C--HHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             EEechhHhh-h--hHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            999877654 2  45667777755  799999888853

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.57  E-value=2.6e-08  Score=90.37  Aligned_cols=113  Identities=16%  Similarity=0.263  Sum_probs=79.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~  233 (348)
                      +.+.+||.||+|.|..+..+++... .+|+++|+++.+++.|++.+..... +.--..+++++..|..++- ..+.+||+
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~-~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCccccc-CccCCCceEEEEchHHHHhhhcCCcccE
Confidence            4567999999999999999886543 3899999999999999988632100 0001357889999887743 23468999


Q ss_pred             Eeechh--hhcC-Chhh--HHHHHHHHHHcCCCCcEEEEEe
Q 018970          234 IWVQWC--IGHL-TDDD--FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~--l~~~-~~~d--~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |++-..  ...- +...  -..+++.|.+.|+|||++++..
T Consensus       155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            996331  1100 0011  2579999999999999998753

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=1.6e-07  Score=79.86  Aligned_cols=100  Identities=15%  Similarity=0.094  Sum_probs=82.5

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ++.+|+|+|+|.|.-+..++-.+++ +++.+|.+..-+...++.....++      .++++.+..++++... .+||+|+
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~~~~~-~~fD~V~  137 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQSRVEEFPSE-PPFDGVI  137 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEECCTTTSCCC-SCEEEEE
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC------cceeeeccchhhhccc-cccceeh
Confidence            3468999999999999998877776 899999999999888887666543      4789999999887643 6899999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +..+-      .+..++.-+...+++||.+++.-
T Consensus       138 sRA~~------~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         138 SRAFA------SLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             CSCSS------SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hhhhc------CHHHHHHHHHHhcCCCcEEEEEC
Confidence            86551      46688999999999999998875

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.49  E-value=1.7e-08  Score=88.38  Aligned_cols=80  Identities=19%  Similarity=0.186  Sum_probs=66.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||||+|.+|..|++.+. .|+++|+++.+++.+++++..        ..++.+..+|+.+++.+...++.|
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~--------~~n~~ii~~D~l~~~~~~~~~~~v   97 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKL--------NTRVTLIHQDILQFQFPNKQRYKI   97 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTT--------CSEEEECCSCCTTTTCCCSSEEEE
T ss_pred             CCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhh--------ccchhhhhhhhhccccccceeeeE
Confidence            56778999999999999999998765 599999999999988777654        468999999999988776677777


Q ss_pred             eechhhhcCC
Q 018970          235 WVQWCIGHLT  244 (348)
Q Consensus       235 i~~~~l~~~~  244 (348)
                      +++... |++
T Consensus        98 v~NLPY-~Is  106 (245)
T d1yuba_          98 VGNIPY-HLS  106 (245)
T ss_dssp             EEECCS-SSC
T ss_pred             eeeeeh-hhh
Confidence            777665 555

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.48  E-value=5.1e-07  Score=76.90  Aligned_cols=145  Identities=14%  Similarity=0.103  Sum_probs=91.2

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      ..++.+|||.|||+|.++..+.+....  .++++|+++..+..               .....+...|....... ..||
T Consensus        17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------------~~~~~~~~~~~~~~~~~-~~fd   80 (223)
T d2ih2a1          17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------------PPWAEGILADFLLWEPG-EAFD   80 (223)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------------CTTEEEEESCGGGCCCS-SCEE
T ss_pred             CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------------cccceeeeeehhccccc-cccc
Confidence            467789999999999999888766443  69999999865432               12356667776655543 6899


Q ss_pred             EEeechhhhcCCh--------------------------h-hHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCce
Q 018970          233 VIWVQWCIGHLTD--------------------------D-DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSI  285 (348)
Q Consensus       233 ~Ii~~~~l~~~~~--------------------------~-d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~  285 (348)
                      +|+++..+.....                          . -...++.++.+.|+|||.+.+..+..   +. ..     
T Consensus        81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~---~l-~~-----  151 (223)
T d2ih2a1          81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT---WL-VL-----  151 (223)
T ss_dssp             EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG---GG-TC-----
T ss_pred             eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee---ec-cC-----
Confidence            9998876543210                          0 12467889999999999988765321   11 00     


Q ss_pred             ecCHHHHHHHHHhcCCeEEEEeecCCCCccceEEEEEEEee
Q 018970          286 TRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALTA  326 (348)
Q Consensus       286 ~~s~~~l~~l~~~aGf~~v~~~~~~~~~~~l~~v~~~~l~~  326 (348)
                       .+...+++.+.+.+.-.+ .....-|+....+..++.++.
T Consensus       152 -~~~~~lR~~l~~~~~i~i-~~~~~~F~~~~v~t~i~~~~k  190 (223)
T d2ih2a1         152 -EDFALLREFLAREGKTSV-YYLGEVFPQKKVSAVVIRFQK  190 (223)
T ss_dssp             -GGGHHHHHHHHHHSEEEE-EEEESCSTTCCCCEEEEEEES
T ss_pred             -cchHHHHHHHHhcCCEEE-EcchhcCCCCCCcEEEEEEEe
Confidence             112345555554442222 223334665555677777763

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=1.4e-07  Score=84.54  Aligned_cols=112  Identities=17%  Similarity=0.114  Sum_probs=79.3

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~  233 (348)
                      +.+.+||-||+|.|..+..+++... .+|+++|+++.+++.+++.+.....  .--..+++++..|...+- ...++||+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~--~~~d~rv~v~~~Da~~~l~~~~~~yDv  165 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC--GFDDPRAEIVIANGAEYVRKFKNEFDV  165 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcc--cccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence            4567999999999999999986543 4799999999999999987642100  001357888888887643 23468999


Q ss_pred             Eeechhhhc-CCh--hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          234 IWVQWCIGH-LTD--DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~-~~~--~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |++-..-.. .+.  -.-..+++.+.+.|+|||++++..
T Consensus       166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            996422111 010  012589999999999999998764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.43  E-value=2.6e-07  Score=82.06  Aligned_cols=112  Identities=16%  Similarity=0.122  Sum_probs=80.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~  233 (348)
                      ..+.+||-||.|.|..+..+++.. ..+|+++|+++.+++.|++.+.....  .--.++++++..|...+- ....+||+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~--~~~d~r~~i~~~D~~~~l~~~~~~yDv  151 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAG--KLDDPRVDVQVDDGFMHIAKSENQYDV  151 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHT--TTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcc--cccCCCeEEEechHHHHHhhcCCCCCE
Confidence            456799999999999999988543 34899999999999999998642100  001457889998876643 23468999


Q ss_pred             EeechhhhcCChh--hHHHHHHHHHHcCCCCcEEEEEe
Q 018970          234 IWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~~--d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |++-..-..-...  --..+++.+.+.|+|||+++...
T Consensus       152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            9964221110000  13579999999999999998754

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.42  E-value=1.6e-07  Score=84.60  Aligned_cols=112  Identities=20%  Similarity=0.171  Sum_probs=78.2

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~  233 (348)
                      +.+.+||-||.|.|..+..+++... .+|+++|+++.+++.+++.+.....  .--.++++++..|...+- ....+||+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~--~~~dprv~i~i~Da~~~l~~~~~~yDv  182 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC--GFSHPKLDLFCGDGFEFLKNHKNEFDV  182 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG--GGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcc--ccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence            4567999999999999999986443 4899999999999999998754211  111357888888876643 23468999


Q ss_pred             EeechhhhcCCh--hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          234 IWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~--~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |++-..-..-+.  -.-..|++.+.+.|+|||+++...
T Consensus       183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            997322111111  113579999999999999998864

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.3e-07  Score=82.76  Aligned_cols=112  Identities=14%  Similarity=0.084  Sum_probs=78.7

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeE
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV  233 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~  233 (348)
                      +.+.+||-||.|.|..+..+++.. ..+|+++|+++.+++.|++.+....  ..-...+++++..|...+- ...++||+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~--~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA--IGYSSSKLTLHVGDGFEFMKQNQDAFDV  154 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH--GGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhc--cccCCCCceEEEccHHHHHhcCCCCCCE
Confidence            456799999999999999998543 4489999999999999998763210  0001357888888876543 23468999


Q ss_pred             EeechhhhcCCh--hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          234 IWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       234 Ii~~~~l~~~~~--~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |++-..-..-..  -.-..+++.+.+.|+|||.+++..
T Consensus       155 Ii~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         155 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             EEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            997421100000  112468999999999999998864

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.39  E-value=3e-07  Score=76.62  Aligned_cols=125  Identities=18%  Similarity=0.161  Sum_probs=91.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~  229 (348)
                      +.++..++|+.||.|..+..++++.. .|+++|.++.+++.+++..          ..++.++..++.++.     ...+
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~----------~~~~~~~~~~f~~~~~~l~~~~~~   84 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLH----------LPGLTVVQGNFRHLKRHLAALGVE   84 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC----------CTTEEEEESCGGGHHHHHHHTTCS
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhcc----------ccceeEeehHHHHHHHHHHHcCCC
Confidence            67889999999999999999998765 6999999999999998753          346888888776643     2236


Q ss_pred             ceeEEeechhhh-----cCCh--hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCe
Q 018970          230 RYDVIWVQWCIG-----HLTD--DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLH  302 (348)
Q Consensus       230 ~fD~Ii~~~~l~-----~~~~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~  302 (348)
                      .+|.|++-..+.     ....  ......|......|+|||.+++.....              .....+.+.+++.+++
T Consensus        85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs--------------~Ed~ivk~~~~e~~~k  150 (182)
T d1wg8a2          85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS--------------LEDRVVKRFLRESGLK  150 (182)
T ss_dssp             CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH--------------HHHHHHHHHHHHHCSE
T ss_pred             ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc--------------chhHHHHHHHhhccce
Confidence            799998633221     1111  235568899999999999999876321              2234577888887776


Q ss_pred             EE
Q 018970          303 IY  304 (348)
Q Consensus       303 ~v  304 (348)
                      .+
T Consensus       151 ~i  152 (182)
T d1wg8a2         151 VL  152 (182)
T ss_dssp             ES
T ss_pred             ec
Confidence            54

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.35  E-value=5.9e-07  Score=80.30  Aligned_cols=112  Identities=17%  Similarity=0.170  Sum_probs=79.4

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCcee
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD  232 (348)
                      +.+.+||-||.|.|..+..++.... .+++++|+++.+++.+++.+....  ..--..+++++..|...+-  ...++||
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~--~~~~~~r~~i~~~Da~~~l~~~~~~~yD  156 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA--IGYEDPRVNLVIGDGVAFLKNAAEGSYD  156 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH--GGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhh--ccccCCCcEEEEccHHHHHhhccccCcc
Confidence            4567999999999999999886533 479999999999999998763210  0011457888888866543  2346899


Q ss_pred             EEeechhhhcCCh--hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~--~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|++-..=..-..  ---..+++.+.+.|+|||++++..
T Consensus       157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            9996321100000  113579999999999999999864

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=6.5e-06  Score=75.39  Aligned_cols=133  Identities=15%  Similarity=0.152  Sum_probs=94.6

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC----CCCc
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGR  230 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~  230 (348)
                      ..++.+|||+-||+|.++..|+++ ..+|+++|.++.+++.|++++...++      .|+.|...+..+...    ....
T Consensus       210 ~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i------~n~~~~~~~~~~~~~~~~~~~~~  282 (358)
T d1uwva2         210 VQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL------QNVTFYHENLEEDVTKQPWAKNG  282 (358)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCTTSCCSSSGGGTTC
T ss_pred             cCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhccc------ccceeeecchhhhhhhhhhhhcc
Confidence            456789999999999999998854 45699999999999999998765543      578999998876431    2357


Q ss_pred             eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970          231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK  310 (348)
Q Consensus       231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~  310 (348)
                      ||+|+....=.-     ..++++.+.+. +|.-+++|+.+..           .+.+   ++ ..|.+.||++......-
T Consensus       283 ~d~vilDPPR~G-----~~~~~~~l~~~-~~~~ivYVSCnp~-----------TlaR---Dl-~~l~~~gy~l~~i~~~D  341 (358)
T d1uwva2         283 FDKVLLDPARAG-----AAGVMQQIIKL-EPIRIVYVSCNPA-----------TLAR---DS-EALLKAGYTIARLAMLD  341 (358)
T ss_dssp             CSEEEECCCTTC-----CHHHHHHHHHH-CCSEEEEEESCHH-----------HHHH---HH-HHHHHTTCEEEEEEEEC
T ss_pred             CceEEeCCCCcc-----HHHHHHHHHHc-CCCEEEEEeCCHH-----------HHHH---HH-HHHHHCCCeEeEEEEEe
Confidence            999987544222     22456666654 7777888876421           1111   12 34567899999988777


Q ss_pred             CCCcc
Q 018970          311 GLPEE  315 (348)
Q Consensus       311 ~~~~~  315 (348)
                      -||..
T Consensus       342 ~FP~T  346 (358)
T d1uwva2         342 MFPHT  346 (358)
T ss_dssp             CSTTS
T ss_pred             cCCCC
Confidence            77754

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.32  E-value=2.1e-06  Score=74.23  Aligned_cols=128  Identities=14%  Similarity=0.124  Sum_probs=92.7

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC---CCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~fD  232 (348)
                      ...+|+|||+|.|.-+..++-..++ +++.+|.+..-+...+......++      .++.++...++++..   ..++||
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L------~n~~i~~~R~E~~~~~~~~~~~~D  143 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAETFGQRKDVRESYD  143 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHHHTTCTTTTTCEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC------CCcEEEeehhhhccccccccccce
Confidence            4568999999999999888766655 899999999988887776655443      467777776665432   136899


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD  308 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~  308 (348)
                      +|++..+-      .+..++.-+...+++||.+++.-...            ..-..+...+.+...|+++.....
T Consensus       144 ~v~sRAva------~l~~ll~~~~~~l~~~g~~i~~KG~~------------~~~El~~a~~~~~~~~~~~~~v~~  201 (239)
T d1xdza_         144 IVTARAVA------RLSVLSELCLPLVKKNGLFVALKAAS------------AEEELNAGKKAITTLGGELENIHS  201 (239)
T ss_dssp             EEEEECCS------CHHHHHHHHGGGEEEEEEEEEEECC-------------CHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEEEhhhh------CHHHHHHHHhhhcccCCEEEEECCCC------------hHHHHHHHHHHHHHcCCEEEEEEE
Confidence            99987542      46789999999999999998875221            111223455678888998776443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=1.4e-05  Score=66.15  Aligned_cols=98  Identities=14%  Similarity=0.151  Sum_probs=70.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------  225 (348)
                      ++++.+|||+||++|.++..+.+...  ..+.++|..+-                 ....++.+...|+.+..       
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------------~~i~~~~~~~~d~~~~~~~~~~~~   82 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------------DPIVGVDFLQGDFRDELVMKALLE   82 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------------CCCTTEEEEESCTTSHHHHHHHHH
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------------cccCCceEeecccccchhhhhhhh
Confidence            46788999999999999998886532  37999996541                 11356888898887632       


Q ss_pred             -CCCCceeEEeechhhhcCChhh---------HHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDD---------FVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d---------~~~~l~~~~~~LkpgG~lii~~  269 (348)
                       ...+.+|+|++-.+...-...+         ....+.-+.++|++||.|++.-
T Consensus        83 ~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~  136 (180)
T d1ej0a_          83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence             1236799999865544322111         3457788889999999999986

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=8.4e-06  Score=72.03  Aligned_cols=79  Identities=14%  Similarity=0.083  Sum_probs=64.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI  234 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I  234 (348)
                      +.++.+|||||+|+|.+|..|++.+. .|+++|+++.+++..++.+.....     ..+++++.+|+..+..+  .++.|
T Consensus        19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~-----~~~~~~i~~D~l~~~~~--~~~~v   90 (278)
T d1zq9a1          19 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPV-----ASKLQVLVGDVLKTDLP--FFDTC   90 (278)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEESCTTTSCCC--CCSEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhcc-----ccchhhhHHHHhhhhhh--hhhhh
Confidence            56778999999999999999998865 699999999999999998865322     36799999999887754  35677


Q ss_pred             eechhhh
Q 018970          235 WVQWCIG  241 (348)
Q Consensus       235 i~~~~l~  241 (348)
                      +++-..+
T Consensus        91 V~NLPY~   97 (278)
T d1zq9a1          91 VANLPYQ   97 (278)
T ss_dssp             EEECCGG
T ss_pred             hcchHHH
Confidence            7766654

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.00  E-value=1.7e-05  Score=74.49  Aligned_cols=161  Identities=12%  Similarity=0.077  Sum_probs=99.4

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC--------------CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF--------------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP  220 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~--------------~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d  220 (348)
                      +.++.+|+|-.||+|.+...+.+...              ..+.|+|+++.+...|+-+.--.+..    .....+...|
T Consensus       160 ~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~----~~~~~i~~~d  235 (425)
T d2okca1         160 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----TDRSPIVCED  235 (425)
T ss_dssp             CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----SSCCSEEECC
T ss_pred             CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc----cccceeecCc
Confidence            46678999999999999987765421              14999999999999998765332221    1235566677


Q ss_pred             CCCCCCCCCceeEEeechhhhcCChh---------------hHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCce
Q 018970          221 LQDFTPETGRYDVIWVQWCIGHLTDD---------------DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSI  285 (348)
Q Consensus       221 ~~~~~~~~~~fD~Ii~~~~l~~~~~~---------------d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~  285 (348)
                      ..+... ...||+|+++..+..-...               .-..++..+...|+|||.+.+.-+..   +.+..     
T Consensus       236 ~l~~~~-~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~---~L~~~-----  306 (425)
T d2okca1         236 SLEKEP-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN---VLFEA-----  306 (425)
T ss_dssp             TTTSCC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH---HHHCS-----
T ss_pred             hhhhhc-ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechH---Hhhhh-----
Confidence            665443 3689999999887532210               12459999999999999887764311   11110     


Q ss_pred             ecCHHHHHHHH-HhcCCeEEEEeecCCCCccceEEEEEEEeecCC
Q 018970          286 TRSDFYFKELF-SRCGLHIYKSKDQKGLPEELFAVKMYALTAEMP  329 (348)
Q Consensus       286 ~~s~~~l~~l~-~~aGf~~v~~~~~~~~~~~l~~v~~~~l~~~~~  329 (348)
                       -+...+++.+ +...+.-+-.....-|....-+.-++.++..++
T Consensus       307 -~~~~~iR~~Ll~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~k~  350 (425)
T d2okca1         307 -GAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP  350 (425)
T ss_dssp             -THHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEESSC
T ss_pred             -hhHHHHHHHHHHhcchhHhhcCCcccccCCCCCeEEEEEECCCC
Confidence             0123466554 443333333333334544445666677765443

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.91  E-value=2.9e-05  Score=69.77  Aligned_cols=134  Identities=16%  Similarity=0.157  Sum_probs=92.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+|||+.||.|.=+..++.....  .++++|.++.-+...++++...|.      .++.+...|...++...+.||
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~------~~i~~~~~d~~~~~~~~~~fD  187 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLHIGELNVEFD  187 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGGGGGGCCCEE
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh------hcccccccccccccccccccc
Confidence            678889999999999988888766443  699999999999999888776543      345566666655554457899


Q ss_pred             EEeec------hhhhcC-------Chhh-------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHH
Q 018970          233 VIWVQ------WCIGHL-------TDDD-------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYF  292 (348)
Q Consensus       233 ~Ii~~------~~l~~~-------~~~d-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l  292 (348)
                      .|++-      +++..-       ..++       ...++.++.+.|||||.++.++=...     ..      -++..+
T Consensus       188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~-----~e------ENE~VV  256 (313)
T d1ixka_         188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE-----PE------ENEFVI  256 (313)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC-----GG------GTHHHH
T ss_pred             EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC-----hH------hHHHHH
Confidence            99851      222211       1112       24578899999999999887651110     00      134567


Q ss_pred             HHHHHhcCCeEEE
Q 018970          293 KELFSRCGLHIYK  305 (348)
Q Consensus       293 ~~l~~~aGf~~v~  305 (348)
                      ...+++.+++++.
T Consensus       257 ~~~L~~~~~~~~~  269 (313)
T d1ixka_         257 QWALDNFDVELLP  269 (313)
T ss_dssp             HHHHHHSSEEEEC
T ss_pred             HHHHhcCCCEEee
Confidence            7788888877765

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=4.3e-06  Score=73.01  Aligned_cols=63  Identities=10%  Similarity=0.094  Sum_probs=53.7

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  226 (348)
                      +.++..|||||||.|.+|..|++... .|+++|+++.+++..++....        ..+++++.+|+.+++.
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~--------~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFL--------GPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTT--------GGGEEEECSCGGGCCH
T ss_pred             CCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhh--------ccchhHHhhhhhhhcc
Confidence            56778999999999999999996654 699999999999999886654        4689999999988763

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.84  E-value=0.00013  Score=62.63  Aligned_cols=105  Identities=12%  Similarity=-0.066  Sum_probs=62.9

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcc-eeEEEc-CCCCCCCCCCce
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCV-PLQDFTPETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~-i~~~~~-d~~~~~~~~~~f  231 (348)
                      +.+..+|+|+|||.|.++..++.+.. ..|.++++--..-        ...........+ +++... |+..+  +++..
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~--------e~P~~~~~~~~ni~~~~~~~dv~~l--~~~~~  133 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGH--------EEPIPMSTYGWNLVRLQSGVDVFFI--PPERC  133 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTS--------CCCCCCCSTTGGGEEEECSCCTTTS--CCCCC
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccc--------cCCccccccccccccchhhhhHHhc--CCCcC
Confidence            67788999999999999998875532 2677877632110        000000000112 333332 33333  34689


Q ss_pred             eEEeechhhhcCCh----hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          232 DVIWVQWCIGHLTD----DDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       232 D~Ii~~~~l~~~~~----~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      |+|+|-.+-..-..    .....++.-+.++|+|||.|++.-
T Consensus       134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKV  175 (257)
T d2p41a1         134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  175 (257)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEE
Confidence            99998654332111    123467888889999999988864

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=6.5e-05  Score=72.23  Aligned_cols=166  Identities=11%  Similarity=0.020  Sum_probs=96.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC----C---------------CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCccee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY----F---------------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN  215 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~----~---------------~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~  215 (348)
                      +.++.+|+|-.||+|.+........    .               ..+.|+|+++.+...|+-++--.+... .......
T Consensus       162 ~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~-~i~~~~~  240 (524)
T d2ar0a1         162 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGA  240 (524)
T ss_dssp             CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC-BGGGTBS
T ss_pred             CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccc-cccccch
Confidence            5667799999999999987665431    1               148999999999999886654332211 1111223


Q ss_pred             EEEcCCCCCC-CCCCceeEEeechhhhcCChhh------------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCC
Q 018970          216 FFCVPLQDFT-PETGRYDVIWVQWCIGHLTDDD------------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKED  282 (348)
Q Consensus       216 ~~~~d~~~~~-~~~~~fD~Ii~~~~l~~~~~~d------------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~  282 (348)
                      +...+...-+ .....||+|+++..+..-...+            -..|+..+.+.|+|||++.+.-+..   +.+..  
T Consensus       241 ~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~---~Lf~~--  315 (524)
T d2ar0a1         241 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN---VLFEG--  315 (524)
T ss_dssp             EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH---HHHCC--
T ss_pred             hhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH---Hhhhh--
Confidence            3333332211 1235799999998775322111            2359999999999999988764321   11000  


Q ss_pred             CceecCHHHHHH-HHHhcCCeEEEEeecCCCCccceEEEEEEEeecCCC
Q 018970          283 RSITRSDFYFKE-LFSRCGLHIYKSKDQKGLPEELFAVKMYALTAEMPR  330 (348)
Q Consensus       283 ~~~~~s~~~l~~-l~~~aGf~~v~~~~~~~~~~~l~~v~~~~l~~~~~~  330 (348)
                          -+...+++ ++++..+..+-.....-|...--+..++.++..++.
T Consensus       316 ----~~~~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~k~~  360 (524)
T d2ar0a1         316 ----GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA  360 (524)
T ss_dssp             ----THHHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBCSS
T ss_pred             ----hhhHHHHHHHHHcCCceEEEECCCCcCCCCCCCeEEEEEECCCCC
Confidence                11234555 455544443333333345444456677777755443

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.60  E-value=2.7e-05  Score=66.94  Aligned_cols=110  Identities=11%  Similarity=0.059  Sum_probs=69.2

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHh----CC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR----YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT  214 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i  214 (348)
                      ..+.+++.+.       ++.+|||||++.|..+..++..    +. .+++++|+.+.........           ..++
T Consensus        70 ~~~~eli~~~-------KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~-----------~~~I  131 (232)
T d2bm8a1          70 AVYHDMLWEL-------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD-----------MENI  131 (232)
T ss_dssp             HHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG-----------CTTE
T ss_pred             HHHHHHHHHh-------CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc-----------ccce
Confidence            4555555542       3568999999999877655532    22 3799999976543322111           3579


Q ss_pred             eEEEcCCCCCC----CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          215 NFFCVPLQDFT----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       215 ~~~~~d~~~~~----~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      ++..+|..+..    .....+|+|+.-.. |+ ....+.. + .+...|+|||+++|-+..
T Consensus       132 ~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H~-~~~v~~~-~-~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         132 TLHQGDCSDLTTFEHLREMAHPLIFIDNA-HA-NTFNIMK-W-AVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             EEEECCSSCSGGGGGGSSSCSSEEEEESS-CS-SHHHHHH-H-HHHHTCCTTCEEEECSCH
T ss_pred             eeeecccccHHHHHHHHhcCCCEEEEcCC-cc-hHHHHHH-H-HHhcccCcCCEEEEEcCC
Confidence            99998876533    22346788876443 33 3222333 3 356899999999998753

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=8.7e-05  Score=65.61  Aligned_cols=134  Identities=17%  Similarity=0.092  Sum_probs=88.5

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCcee
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD  232 (348)
                      +.++.+|||+.||.|.=+..+++.... .|+++|+++.-+...++++...|.      .++.....|..... ...+.||
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~------~~~~~~~~~~~~~~~~~~~~fd  173 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM------KATVKQGDGRYPSQWCGEQQFD  173 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC------CCEEEECCTTCTHHHHTTCCEE
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc------cceeeeccccccchhccccccc
Confidence            677889999999999999999876554 799999999999999998877643      22333333332211 1236799


Q ss_pred             EEee------chhhhcCC-------hhh-------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHH
Q 018970          233 VIWV------QWCIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYF  292 (348)
Q Consensus       233 ~Ii~------~~~l~~~~-------~~d-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l  292 (348)
                      .|++      .+++..-+       ..+       ...+|.++.+.|||||.|+.+.=...     ..      -+++.+
T Consensus       174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~-----~~------ENE~vv  242 (284)
T d1sqga2         174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL-----PE------ENSLQI  242 (284)
T ss_dssp             EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC-----GG------GTHHHH
T ss_pred             EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc-----hh------hCHHHH
Confidence            9984      23332222       111       24678999999999999888751110     00      134556


Q ss_pred             HHHHHh-cCCeEEE
Q 018970          293 KELFSR-CGLHIYK  305 (348)
Q Consensus       293 ~~l~~~-aGf~~v~  305 (348)
                      ...+++ .+|+++.
T Consensus       243 ~~~l~~~~~~~~~~  256 (284)
T d1sqga2         243 KAFLQRTADAELCE  256 (284)
T ss_dssp             HHHHHHCTTCEECS
T ss_pred             HHHHHhCCCcEEec
Confidence            677776 4676654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.54  E-value=3.4e-05  Score=70.98  Aligned_cols=107  Identities=12%  Similarity=0.032  Sum_probs=76.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCc---------CCCcceeEEEcCCCCCCC
Q 018970          157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAP---------DMHKATNFFCVPLQDFTP  226 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~---------~~~~~i~~~~~d~~~~~~  226 (348)
                      ++.+|||..||+|..+...+.. +...|+++|+|+..++.+++++...+....         .....+.+...|+..+..
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            3568999999999999976654 555899999999999999998754332211         011235555656543321


Q ss_pred             -CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          227 -ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       227 -~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                       ....||+|.+-.    +.  ....+++.+.+.++.||.|.++.
T Consensus       125 ~~~~~fDvIDiDP----fG--s~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         125 ERHRYFHFIDLDP----FG--SPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HSTTCEEEEEECC----SS--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCcCCcccCCC----CC--CcHHHHHHHHHHhccCCEEEEEe
Confidence             235799988654    22  34679999999999999999974

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00023  Score=63.05  Aligned_cols=76  Identities=12%  Similarity=0.049  Sum_probs=60.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC---CC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TG  229 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~--~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~  229 (348)
                      +.++.+|||+.||+|.-+.+++...  ...|+++|+++.-++.+++++...|.      .++.+...|...+...   .+
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~------~~~~~~~~d~~~~~~~~~~~~  165 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSPSDPRYH  165 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCTTCGGGT
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc------cceeeeehhhhhhcccccccc
Confidence            5678899999999999988887652  23799999999999999999887654      4677888887665432   25


Q ss_pred             ceeEEee
Q 018970          230 RYDVIWV  236 (348)
Q Consensus       230 ~fD~Ii~  236 (348)
                      .||.|++
T Consensus       166 ~fD~VL~  172 (293)
T d2b9ea1         166 EVHYILL  172 (293)
T ss_dssp             TEEEEEE
T ss_pred             eeeEEee
Confidence            7999985

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00071  Score=54.48  Aligned_cols=98  Identities=17%  Similarity=0.021  Sum_probs=63.3

Q ss_pred             CCCCCcEEEEecc-ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCcee
Q 018970          155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG-~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD  232 (348)
                      ++++.+||-+|+| .|.++..+++....+|+++|.|+..++.+++.-.+           ..+...+-.++. ...+.+|
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~-----------~~i~~~~~~~~~~~~~~~~d   93 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD-----------HYIATLEEGDWGEKYFDTFD   93 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS-----------EEEEGGGTSCHHHHSCSCEE
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCc-----------EEeeccchHHHHHhhhcccc
Confidence            6788999999999 57777777755434699999999999999875322           111111111111 1235799


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|+..-.-.+-      ..+..+.++|+|+|.+++..
T Consensus        94 ~vi~~~~~~~~------~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          94 LIVVCASSLTD------IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             EEEECCSCSTT------CCTTTGGGGEEEEEEEEECC
T ss_pred             eEEEEecCCcc------chHHHHHHHhhccceEEEec
Confidence            88864322110      12345788999999999864

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.67  E-value=0.0035  Score=56.61  Aligned_cols=130  Identities=16%  Similarity=0.126  Sum_probs=72.7

Q ss_pred             hHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHh--------------CCC---cEEEEcCCHHHHHHHHHHh
Q 018970          138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR--------------YFN---EVDLLEPVSHFLDAARESL  200 (348)
Q Consensus       138 ~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--------------~~~---~v~~vD~S~~~l~~a~~~~  200 (348)
                      ...++...+.............+|.|+||.+|..+..+...              ...   +|...|.-.+=-...=+.+
T Consensus        32 ~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L  111 (359)
T d1m6ex_          32 TKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSL  111 (359)
T ss_dssp             THHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTT
T ss_pred             HHHHHHHHHHhcccCCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhc
Confidence            33455555544332112234468999999999887433211              111   5666664433333222222


Q ss_pred             CCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCCh-------------------------------hhHH
Q 018970          201 APENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------DDFV  249 (348)
Q Consensus       201 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~-------------------------------~d~~  249 (348)
                      ....-  ......+....+.+-+=-+++++.|++++..++|++..                               .|+.
T Consensus       112 ~~~~~--~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~  189 (359)
T d1m6ex_         112 PIEND--VDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHA  189 (359)
T ss_dssp             TTSCS--CTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHH
T ss_pred             ccccc--CCCCeEEEecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHH
Confidence            11100  00001122223344443356789999999999998741                               1466


Q ss_pred             HHHHHHHHcCCCCcEEEEEe
Q 018970          250 SFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       250 ~~l~~~~~~LkpgG~lii~~  269 (348)
                      .||+.=++=|+|||.+++.-
T Consensus       190 ~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         190 LFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             HHHHHHHHHBCTTCEEEEEE
T ss_pred             HHHHHHHHHhcCCcEEEEEE
Confidence            78888888999999999864

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.0018  Score=57.83  Aligned_cols=59  Identities=17%  Similarity=0.170  Sum_probs=49.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC
Q 018970          157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF  224 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~  224 (348)
                      .+.+|||||.|.|.+|..|++. .+..|+++|+++.+.+..++.+..         .++.++..|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~---------~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG---------SPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT---------SSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC---------CCcEEEeCchhhc
Confidence            4668999999999999999977 455899999999999999988753         4577888887643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.59  E-value=0.0051  Score=49.03  Aligned_cols=97  Identities=14%  Similarity=-0.005  Sum_probs=65.1

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--------
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--------  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------  225 (348)
                      ++++.+||-+|||. |.++..++.....+|+++|.++.-++.|++.-..           ..+...+..+..        
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~-----------~~~~~~~~~~~~~~~~~~~~   92 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD-----------VTLVVDPAKEEESSIIERIR   92 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-----------EEEECCTTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc-----------EEEeccccccccchhhhhhh
Confidence            67888999999994 7777777766555799999999999999875432           112111111100        


Q ss_pred             -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                       ...+.+|+|+-.-.        -...+..+.++|+|+|.+++...
T Consensus        93 ~~~g~g~D~vid~~g--------~~~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          93 SAIGDLPNVTIDCSG--------NEKCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             HHSSSCCSEEEECSC--------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred             cccccCCceeeecCC--------ChHHHHHHHHHHhcCCceEEEec
Confidence             01245898875322        12567888899999999998653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.32  E-value=0.0052  Score=50.54  Aligned_cols=102  Identities=9%  Similarity=-0.137  Sum_probs=66.9

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------  225 (348)
                      ++++.+||.+|||. |..+..++.. +...|.++|.++.-++.|++.-..             .. .+-.+-+       
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~-------------~~-~~~~~~~~~~~i~~   88 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-------------IA-DLSLDTPLHEQIAA   88 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-------------EE-ETTSSSCHHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc-------------EE-EeCCCcCHHHHHHH
Confidence            67889999999998 6566666654 455899999999999999875221             11 1111111       


Q ss_pred             -CCCCceeEEeechhh-------hcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          226 -PETGRYDVIWVQWCI-------GHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l-------~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                       .....+|+++-.-..       +.+........++.+.++++|||.+++...
T Consensus        89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence             012468998853221       111111234689999999999999998753

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.30  E-value=0.0082  Score=48.31  Aligned_cols=95  Identities=13%  Similarity=-0.009  Sum_probs=64.0

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------C
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~  226 (348)
                      ++++.+||-+|||. |..+..+++.. ...|+++|.+++-++.+++.=..            .++...-.++.      .
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~------------~~i~~~~~~~~~~v~~~t   92 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT------------DILNYKNGHIEDQVMKLT   92 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS------------EEECGGGSCHHHHHHHHT
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc------------ccccccchhHHHHHHHHh
Confidence            67889999999997 77888887654 34799999999999999865221            11111111110      1


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ....+|+|+-+-.-        ...++.+.++++|+|.+++..
T Consensus        93 ~g~G~D~vid~~g~--------~~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          93 NGKGVDRVIMAGGG--------SETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             TTSCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECC
T ss_pred             hccCcceEEEccCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence            12459998754321        135677789999999999864

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0077  Score=53.25  Aligned_cols=146  Identities=17%  Similarity=0.184  Sum_probs=90.3

Q ss_pred             CCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC---CCcee
Q 018970          158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYD  232 (348)
Q Consensus       158 ~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD  232 (348)
                      +.+|+|+=||.|.++..|-..++.  -|.++|+++.+++.-+.++..           ..+.+.|+.++...   ...+|
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~-----------~~~~~~di~~~~~~~~~~~~~D   70 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----------TQLLAKTIEGITLEEFDRLSFD   70 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------SCEECSCGGGCCHHHHHHHCCS
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCC-----------CCcccCchhhCCHhHcCCCCcc
Confidence            468999999999999888766764  478999999999998888653           44566677665421   13689


Q ss_pred             EEeechhhhcCC--------hhhHHHHHHHHHHc---C--CCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhc
Q 018970          233 VIWVQWCIGHLT--------DDDFVSFFKRAKVG---L--KPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRC  299 (348)
Q Consensus       233 ~Ii~~~~l~~~~--------~~d~~~~l~~~~~~---L--kpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~a  299 (348)
                      +++.......+.        +++...++-.+.++   +  ||  .+++.||+..-..         ....+.+.+.|++.
T Consensus        71 ll~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kP--k~~i~ENV~~l~~---------~~~~~~i~~~l~~~  139 (343)
T d1g55a_          71 MILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKGFEV---------SSTRDLLIQTIENC  139 (343)
T ss_dssp             EEEECCC------------------CHHHHHHHHGGGCSSCC--SEEEEEEETTGGG---------SHHHHHHHHHHHHT
T ss_pred             EEEeecccccccccccccccccccccccchhhhhHhhhcCCC--ceeeeeccCCccc---------chhhHHHHhhhhcc
Confidence            998654333221        11122233333333   4  46  4566687753110         12346788899999


Q ss_pred             CCeEEEEee---cCCCCccceEEEEEEEe
Q 018970          300 GLHIYKSKD---QKGLPEELFAVKMYALT  325 (348)
Q Consensus       300 Gf~~v~~~~---~~~~~~~l~~v~~~~l~  325 (348)
                      ||.+.....   ..+.|..--.+.+.+.+
T Consensus       140 GY~v~~~vlna~dyGvPQ~R~Rvfivg~r  168 (343)
T d1g55a_         140 GFQYQEFLLSPTSLGIPNSRLRYFLIAKL  168 (343)
T ss_dssp             TEEEEEEEECGGGGTCSCCCCEEEEEEEE
T ss_pred             ccccceeeeeccccCCcccceeEEEEEEe
Confidence            999776443   34567665566565554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.11  E-value=0.011  Score=47.71  Aligned_cols=98  Identities=15%  Similarity=0.037  Sum_probs=63.3

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC----C--C
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----T--P  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~--~  226 (348)
                      +.++.+||-+|||. |.++..+++... ..|+++|.++..++.+++.-...         -++....+..+.    .  .
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~~~~~~i~~~~   96 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL---------TLNRRETSVEERRKAIMDIT   96 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSE---------EEETTTSCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceE---------EEeccccchHHHHHHHHHhh
Confidence            56788999999985 777888876644 47999999999999997652210         011001111000    0  1


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ....+|+|+-.-.-        ...++.+.++|+|||.+++..
T Consensus        97 ~~~g~Dvvid~vG~--------~~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          97 HGRGADFILEATGD--------SRALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             TTSCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCceEEeecCCc--------hhHHHHHHHHhcCCCEEEEEe
Confidence            12459998853211        135677889999999998764

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.06  E-value=0.0028  Score=54.37  Aligned_cols=87  Identities=16%  Similarity=0.061  Sum_probs=60.3

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCC---CcCCCcceeEEEcCCCCCC-CCCCcee
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM---APDMHKATNFFCVPLQDFT-PETGRYD  232 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~---~~~~~~~i~~~~~d~~~~~-~~~~~fD  232 (348)
                      ...+|||+-||.|..+..++..+.. |+++|-++.+....++.+......   ......+++++++|..++- ....+||
T Consensus        88 ~~~~VlD~TaGlG~Da~vlA~~G~~-V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D  166 (250)
T d2oyra1          88 YLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_dssp             BCCCEEETTCTTCHHHHHHHHHTCC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred             CCCEEEECCCcccHHHHHHHhCCCE-EEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence            3348999999999999999988775 999999998766655443221000   0011247899999865533 2246799


Q ss_pred             EEeechhhhcCC
Q 018970          233 VIWVQWCIGHLT  244 (348)
Q Consensus       233 ~Ii~~~~l~~~~  244 (348)
                      +|++-.++.+-.
T Consensus       167 vIYlDPMFp~~~  178 (250)
T d2oyra1         167 VVYLDPMFPHKQ  178 (250)
T ss_dssp             EEEECCCCCCCC
T ss_pred             EEEECCCCcccc
Confidence            999988776543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.04  E-value=0.012  Score=47.17  Aligned_cols=95  Identities=14%  Similarity=-0.018  Sum_probs=63.8

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CC
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~  227 (348)
                      ++++.+||-+|||. |..+..+++. +...|.++|.++.-++.+++.-..            .++..+-+++.     ..
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~------------~~i~~~~~~~~~~i~~~t   93 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT------------HVINSKTQDPVAAIKEIT   93 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCe------------EEEeCCCcCHHHHHHHHc
Confidence            77889999999986 4455656544 555788899999999999875221            22222212211     12


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ++.||+|+-+-.        -...++.+.++++|+|.+++..
T Consensus        94 ~gg~D~vid~~G--------~~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          94 DGGVNFALESTG--------SPEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             TSCEEEEEECSC--------CHHHHHHHHHTEEEEEEEEECC
T ss_pred             CCCCcEEEEcCC--------cHHHHHHHHhcccCceEEEEEe
Confidence            357999885322        1256778899999999998854

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.019  Score=45.71  Aligned_cols=96  Identities=17%  Similarity=0.060  Sum_probs=63.6

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------  225 (348)
                      +.++.+||=+|||. |.++..++.. +...|+++|.++.-++.|++.-.+            .+...+-++..       
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~------------~~~~~~~~~~~~~~~~~~   91 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD------------LVLQISKESPQEIARKVE   91 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS------------EEEECSSCCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc------------cccccccccccccccccc
Confidence            67888999999987 4555666655 444799999999999999865221            11111111110       


Q ss_pred             -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN  270 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~  270 (348)
                       .....+|+|+-.-.-        ...++.+.+++++||.+++...
T Consensus        92 ~~~g~g~Dvvid~~G~--------~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          92 GQLGCKPEVTIECTGA--------EASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             HHHTSCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             ccCCCCceEEEeccCC--------chhHHHHHHHhcCCCEEEEEec
Confidence             012468988763321        2577889999999999998653

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=95.86  E-value=0.011  Score=53.47  Aligned_cols=47  Identities=23%  Similarity=0.261  Sum_probs=36.9

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCC------C--cEEEEcCCHHHHHHHHHHhCC
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYF------N--EVDLLEPVSHFLDAARESLAP  202 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~------~--~v~~vD~S~~~l~~a~~~~~~  202 (348)
                      .+..+|||+|+|+|.++..++....      .  .++.+|.|+.+.+.-++.+..
T Consensus        78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~  132 (365)
T d1zkda1          78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  132 (365)
T ss_dssp             CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence            4556899999999999988765421      1  589999999988887777654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.51  E-value=0.023  Score=45.61  Aligned_cols=97  Identities=12%  Similarity=-0.068  Sum_probs=65.7

Q ss_pred             cCCCCCcEEEEeccc-cHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCCCC-----
Q 018970          154 RNNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFT-----  225 (348)
Q Consensus       154 ~~~~~~~VLDvGcG~-G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~-----  225 (348)
                      .++++.+||-+|||. |.++..+++.. ...|+.+|.++.-++.|++.-..            .+... ..++..     
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~------------~~i~~~~~~~~~~~~~~   92 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT------------DCLNPRELDKPVQDVIT   92 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------------EEECGGGCSSCHHHHHH
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC------------cccCCccchhhhhhhHh
Confidence            367889999999998 77888777664 44799999999999999875322            11111 111110     


Q ss_pred             -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCC-cEEEEEec
Q 018970          226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN  270 (348)
Q Consensus       226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg-G~lii~~~  270 (348)
                       ...+.+|+|+-+-.        -...+....+.|+|| |.+++.-.
T Consensus        93 ~~~~~G~d~vie~~G--------~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          93 ELTAGGVDYSLDCAG--------TAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             HHHTSCBSEEEESSC--------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             hhhcCCCcEEEEecc--------cchHHHHHHHHhhcCCeEEEecCC
Confidence             01256899875332        135788899999996 99988643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.46  E-value=0.022  Score=44.89  Aligned_cols=94  Identities=18%  Similarity=0.034  Sum_probs=61.1

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CCC
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET  228 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~  228 (348)
                      +.++.+||-+|||. |.++..+++....+|+++|.++.-++.+++.-..            .+....-++..     ...
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~------------~~i~~~~~~~~~~~~~~~~   92 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS------------LTVNARQEDPVEAIQRDIG   92 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHHS
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc------------ccccccchhHHHHHHHhhc
Confidence            67888999999986 6677777766545799999999999999875322            12221111111     111


Q ss_pred             CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +.+|+|++...         ...+..+.+.|+|||.+++..
T Consensus        93 g~~~~i~~~~~---------~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          93 GAHGVLVTAVS---------NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             SEEEEEECCSC---------HHHHHHHHTTEEEEEEEEECC
T ss_pred             CCccccccccc---------chHHHHHHHHhcCCcEEEEEE
Confidence            33444443222         245677889999999998864

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.033  Score=44.32  Aligned_cols=94  Identities=13%  Similarity=0.031  Sum_probs=63.4

Q ss_pred             CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------C
Q 018970          155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P  226 (348)
Q Consensus       155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~  226 (348)
                      +.++.+||-.|+  |.|..+..+++....+|++++.|++.++.+++.-..            .++...-.++.      .
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~------------~vi~~~~~~~~~~i~~~t   93 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH------------EVFNHREVNYIDKIKKYV   93 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EEEETTSTTHHHHHHHHH
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcc------------cccccccccHHHHhhhhh
Confidence            678889999996  467888888876555799999899888888764221            11111111111      1


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ....+|+|+.+-.         ...++...++|+|+|.++...
T Consensus        94 ~~~g~d~v~d~~g---------~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          94 GEKGIDIIIEMLA---------NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             CTTCEEEEEESCH---------HHHHHHHHHHEEEEEEEEECC
T ss_pred             ccCCceEEeeccc---------HHHHHHHHhccCCCCEEEEEe
Confidence            2356999986432         135777889999999999863

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.37  E-value=0.042  Score=48.10  Aligned_cols=148  Identities=13%  Similarity=0.034  Sum_probs=94.1

Q ss_pred             CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEe
Q 018970          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii  235 (348)
                      .+.+|||+=||.|.++..|-..++.-+.++|+++.+++.-+.++...             ...|+.++... -..+|+++
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-------------~~~Di~~~~~~~~~~~Dll~   76 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-------------PEGDITQVNEKTIPDHDILC   76 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-------------CBSCGGGSCGGGSCCCSEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-------------CcCchhcCchhhcceeeeee
Confidence            46799999999999999998888877888999999999999988652             12455554422 13689998


Q ss_pred             echhhhcC---------Ch--hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970          236 VQWCIGHL---------TD--DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY  304 (348)
Q Consensus       236 ~~~~l~~~---------~~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v  304 (348)
                      .......+         .+  ..+-..+-++.+.++|.  +++.||+..-.      ........+.+.+.|++.||.+.
T Consensus        77 ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~--~~~lENV~~~~------~~~~~~~~~~i~~~l~~lGY~~~  148 (327)
T d2c7pa1          77 AGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFA------SHDNGNTLEVVKNTMNELDYSFH  148 (327)
T ss_dssp             EECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGG------TGGGGHHHHHHHHHHHHTTBCCE
T ss_pred             cccccchhhhhhhhcCCcccchhHHHHHHHHHhccCCc--EEecccchhhh------hhccchhhHHhhhHHHhcCCcce
Confidence            64332211         11  11333344555667884  56667664211      00111233567889999999877


Q ss_pred             EEee---cCCCCccceEEEEEEEe
Q 018970          305 KSKD---QKGLPEELFAVKMYALT  325 (348)
Q Consensus       305 ~~~~---~~~~~~~l~~v~~~~l~  325 (348)
                      ....   ..+.|..--.+.+.+.+
T Consensus       149 ~~vl~a~~~GvPQ~R~R~fivg~r  172 (327)
T d2c7pa1         149 AKVLNALDYGIPQKRERIYMICFR  172 (327)
T ss_dssp             EEEEEGGGGTCSBCCEEEEEEEEB
T ss_pred             eeEecHHHcCCCchhhhheeeeec
Confidence            6433   34567665556665655

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.35  E-value=0.0023  Score=51.37  Aligned_cols=98  Identities=8%  Similarity=0.074  Sum_probs=66.4

Q ss_pred             CCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       157 ~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      ++.+||-||+|. |..+...+......|+++|.+++.++..+..+..          ++++...+-+.+...-...|+||
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~----------~~~~~~~~~~~l~~~~~~aDivI  100 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----------RVELLYSNSAEIETAVAEADLLI  100 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----------GSEEEECCHHHHHHHHHTCSEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc----------cceeehhhhhhHHHhhccCcEEE
Confidence            568999999997 6667777777666899999999999998887643          34454443222221113579999


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV  266 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li  266 (348)
                      ..--+---+  -+.-+-+++.+.+|||..++
T Consensus       101 ~aalipG~~--aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         101 GAVLVPGRR--APILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             ECCCCTTSS--CCCCBCHHHHTTSCTTCEEE
T ss_pred             EeeecCCcc--cCeeecHHHHhhcCCCcEEE
Confidence            754332211  22334578899999998865

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.35  E-value=0.08  Score=45.82  Aligned_cols=146  Identities=14%  Similarity=0.075  Sum_probs=93.5

Q ss_pred             cEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEeech
Q 018970          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQW  238 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii~~~  238 (348)
                      +|||+=||.|.+...+-..++..+.++|+++.+++.-+.++..            .+...|+.++... -...|+++...
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~------------~~~~~Di~~~~~~~~~~~dll~~g~   69 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA------------KLIKGDISKISSDEFPKCDGIIGGP   69 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCS------------EEEESCTTTSCGGGSCCCSEEEECC
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC------------CCccCChhhCCHhHcccccEEeecc
Confidence            6999999999999988877888788999999999988888643            3566788887532 24689999643


Q ss_pred             hhhcC---------Chh--hHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970          239 CIGHL---------TDD--DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK  307 (348)
Q Consensus       239 ~l~~~---------~~~--d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~  307 (348)
                      ....+         .++  .+---+-++...++|  .+++.||+..--      .......-..+...+...||.+....
T Consensus        70 PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~P--k~~~lENV~~~~------~~~~~~~~~~~l~~l~~lGY~v~~~v  141 (324)
T d1dcta_          70 PCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKP--IFFLAENVKGMM------AQRHNKAVQEFIQEFDNAGYDVHIIL  141 (324)
T ss_dssp             CCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCC--SEEEEEEEGGGG------SGGGHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             cccccccccccccccccccchHHHHHHHHHhhCC--ceeecccccccc------ccccchhhHHHHhHHhhCCCccceee
Confidence            33322         111  111123345566788  466677664210      01111223445666777899877744


Q ss_pred             e---cCCCCccceEEEEEEEe
Q 018970          308 D---QKGLPEELFAVKMYALT  325 (348)
Q Consensus       308 ~---~~~~~~~l~~v~~~~l~  325 (348)
                      .   ..+.|..--.+.+.+.+
T Consensus       142 lna~~~GvPQ~R~R~fiv~~r  162 (324)
T d1dcta_         142 LNANDYGVAQDRKRVFYIGFR  162 (324)
T ss_dssp             EEGGGGTCSBCCEEEEEEEEE
T ss_pred             eecccccCchhhceeeEeeec
Confidence            3   45677776666666665

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.08  E-value=0.049  Score=42.94  Aligned_cols=89  Identities=13%  Similarity=0.043  Sum_probs=60.0

Q ss_pred             cEEEEeccc--cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970          160 VALDCGSGI--GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV  236 (348)
Q Consensus       160 ~VLDvGcG~--G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~  236 (348)
                      +|+=||||.  |.++..|.+.++. +|+++|.+++.++.+++.-.            +.....+.....  ....|+|+.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~------------~~~~~~~~~~~~--~~~~dlIil   68 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI------------IDEGTTSIAKVE--DFSPDFVML   68 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS------------CSEEESCGGGGG--GTCCSEEEE
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc------------chhhhhhhhhhh--ccccccccc
Confidence            588899996  3456677666654 79999999999999987521            112222222111  135799987


Q ss_pred             chhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970          237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      +-...     ....++..+...++++..++-
T Consensus        69 a~p~~-----~~~~vl~~l~~~~~~~~ii~d   94 (171)
T d2g5ca2          69 SSPVR-----TFREIAKKLSYILSEDATVTD   94 (171)
T ss_dssp             CSCHH-----HHHHHHHHHHHHSCTTCEEEE
T ss_pred             cCCch-----hhhhhhhhhhccccccccccc
Confidence            65543     567888999999998866653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.93  E-value=0.052  Score=42.55  Aligned_cols=93  Identities=19%  Similarity=0.128  Sum_probs=60.1

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCC-CCC-----CC
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DFT-----PE  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~-----~~  227 (348)
                      +.++.+||-.|||. |..+..++.....+|+++|.++.-++.+++.-..             ......+ ++.     ..
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~-------------~~~~~~~~~~~~~~~~~~   91 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD-------------LVVNPLKEDAAKFMKEKV   91 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS-------------EEECTTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc-------------eecccccchhhhhccccc
Confidence            67888999999997 5556666665555799999999999999774221             1111111 110     01


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+.+|+|+...     .    ...+..+.++|+|||.+++..
T Consensus        92 ~~~~~~v~~~~-----~----~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          92 GGVHAAVVTAV-----S----KPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             SSEEEEEESSC-----C----HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCceEEeecC-----C----HHHHHHHHHHhccCCceEecc
Confidence            23445554321     1    256788999999999999864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.016  Score=46.00  Aligned_cols=95  Identities=16%  Similarity=0.030  Sum_probs=62.7

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCCCCCcee
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD  232 (348)
                      ++++.+||-+|||. |.++..+++.....++++|.+++-++.+++.-.+            .+....-.+ .....+.+|
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad------------~~i~~~~~~~~~~~~~~~D   95 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD------------EVVNSRNADEMAAHLKSFD   95 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS------------EEEETTCHHHHHTTTTCEE
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCc------------EEEECchhhHHHHhcCCCc
Confidence            67889999999986 7778888766554688999999988888765322            111111111 111225799


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|+-.-.-.        ..+....++|+|+|.+++..
T Consensus        96 ~vid~~g~~--------~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          96 FILNTVAAP--------HNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             EEEECCSSC--------CCHHHHHTTEEEEEEEEECC
T ss_pred             eeeeeeecc--------hhHHHHHHHHhcCCEEEEec
Confidence            988543211        23566778999999999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.75  E-value=0.066  Score=41.98  Aligned_cols=86  Identities=12%  Similarity=-0.003  Sum_probs=58.5

Q ss_pred             cEEEEeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970          160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ  237 (348)
Q Consensus       160 ~VLDvGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~  237 (348)
                      +|.=||+|.  +.++..|.+.++ +|++.|.+++.++.+++.-.            +.....+++.+    ...|+|+..
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~------------~~~~~~~~~~~----~~~DiIila   64 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL------------VDEAGQDLSLL----QTAKIIFLC   64 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS------------CSEEESCGGGG----TTCSEEEEC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhc------------cceeeeecccc----ccccccccc
Confidence            577889984  346677776666 59999999999988876421            11122222222    357998864


Q ss_pred             hhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970          238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVL  267 (348)
Q Consensus       238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii  267 (348)
                      -     ++.....+++++...|+++-+++-
T Consensus        65 v-----p~~~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          65 T-----PIQLILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             S-----CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             C-----cHhhhhhhhhhhhhhcccccceee
Confidence            3     344677899999999999887754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.42  E-value=0.064  Score=42.26  Aligned_cols=95  Identities=15%  Similarity=0.084  Sum_probs=63.2

Q ss_pred             CCCCCcEEEEec-c-ccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------
Q 018970          155 NNQHLVALDCGS-G-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------  225 (348)
Q Consensus       155 ~~~~~~VLDvGc-G-~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------  225 (348)
                      +.++.+||=+|| | .|.++..++.. +...|+++|.+++-++.+++.-..            .+...+-.++.      
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~------------~~i~~~~~~~~~~~~~~   92 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD------------YVINASMQDPLAEIRRI   92 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHH
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc------------eeeccCCcCHHHHHHHH
Confidence            678889999997 4 45666655554 556899999999999999875221            11222212211      


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ...+.||+|+....        -...++.+.++|+|||.+++.-
T Consensus        93 ~~~~~~d~vid~~g--------~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          93 TESKGVDAVIDLNN--------SEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             TTTSCEEEEEESCC--------CHHHHTTGGGGEEEEEEEEECC
T ss_pred             hhcccchhhhcccc--------cchHHHhhhhhcccCCEEEEec
Confidence            11356999986432        1246677889999999998864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.40  E-value=0.077  Score=41.96  Aligned_cols=95  Identities=15%  Similarity=-0.052  Sum_probs=62.8

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CC
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE  227 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~  227 (348)
                      .+++.+||-+|||. |.++..++.. +...|.++|.+++-++.+++.-..            .+...+-+.+.     ..
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~------------~~i~~~~~~~~~~~~~~~   97 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD------------HVVDARRDPVKQVMELTR   97 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS------------EEEETTSCHHHHHHHHTT
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc------------eeecCcccHHHHHHHhhC
Confidence            46778999999987 4455666643 556789999999999988875432            12221111110     11


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ...+|+|+-.-.        -...++...+.|++||.+++..
T Consensus        98 ~~g~d~vid~~g--------~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2          98 GRGVNVAMDFVG--------SQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             TCCEEEEEESSC--------CHHHHHHGGGGEEEEEEEEECC
T ss_pred             CCCceEEEEecC--------cchHHHHHHHHHhCCCEEEEEe
Confidence            245898885333        1246788899999999999864

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.25  E-value=0.084  Score=42.08  Aligned_cols=48  Identities=8%  Similarity=-0.189  Sum_probs=37.7

Q ss_pred             CCCCCcEEEEecccc-HHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCC
Q 018970          155 NNQHLVALDCGSGIG-RITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP  202 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G-~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~  202 (348)
                      ++++.+||=+|||.. ..+..+++.. ..+|+++|.+++-++.|++.-..
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~   76 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT   76 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence            678899999999974 4555555543 45899999999999999987543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.24  E-value=0.014  Score=47.16  Aligned_cols=45  Identities=13%  Similarity=-0.037  Sum_probs=37.1

Q ss_pred             CCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhC
Q 018970          157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLA  201 (348)
Q Consensus       157 ~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~  201 (348)
                      ++.+||-||+|. |..+...+......|+++|.++..++..+....
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~   73 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG   73 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence            467999999997 666777776666689999999999999988754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.12  E-value=0.23  Score=39.27  Aligned_cols=99  Identities=12%  Similarity=-0.148  Sum_probs=59.2

Q ss_pred             cCCCCCcEEEEecccc-HHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCC--CC--CCC
Q 018970          154 RNNQHLVALDCGSGIG-RITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ--DF--TPE  227 (348)
Q Consensus       154 ~~~~~~~VLDvGcG~G-~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~--~~--~~~  227 (348)
                      .++++.+||-+|||.. ..+..+++. +...|+++|.++.-++.|++.-...         .+++...|..  ..  ...
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~---------~i~~~~~d~~~~~~~~~~~   94 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE---------CLNPKDYDKPIYEVICEKT   94 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE---------EECGGGCSSCHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE---------EEcCCCchhHHHHHHHHhc
Confidence            3788899999999974 445555543 5568999999999999998753221         1111111110  00  011


Q ss_pred             CCceeEEeechhhhcCChhhHHHHHHHHHHcC-CCCcEEEEEe
Q 018970          228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLKE  269 (348)
Q Consensus       228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~L-kpgG~lii~~  269 (348)
                      .+.+|+|+-.-..        ...+......+ +++|.+++.-
T Consensus        95 ~~G~d~vid~~g~--------~~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          95 NGGVDYAVECAGR--------IETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             TSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             CCCCcEEEEcCCC--------chHHHHHHHHHHHhcCceEEEE
Confidence            2468888753321        23455555555 4568888864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.29  E-value=1.4  Score=32.47  Aligned_cols=86  Identities=8%  Similarity=0.003  Sum_probs=51.9

Q ss_pred             cEEEEeccccHHHHHHH----HhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCce
Q 018970          160 VALDCGSGIGRITKNLL----IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY  231 (348)
Q Consensus       160 ~VLDvGcG~G~~~~~la----~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~f  231 (348)
                      +|+=+|+|  .++..++    +.+. .|.++|.+++.++.+.+.+            ...+..+|..+..    ..-...
T Consensus         2 ~IvI~G~G--~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~------------~~~vi~Gd~~~~~~l~~~~i~~a   66 (132)
T d1lssa_           2 YIIIAGIG--RVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI------------DALVINGDCTKIKTLEDAGIEDA   66 (132)
T ss_dssp             EEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------------SSEEEESCTTSHHHHHHTTTTTC
T ss_pred             EEEEECCC--HHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh------------hhhhccCcccchhhhhhcChhhh
Confidence            57778875  4444443    3344 6999999999999887654            2456778876632    122467


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEE
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF  265 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~l  265 (348)
                      |.+++...     +++..-++....+.+.+.-.+
T Consensus        67 ~~vv~~t~-----~d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          67 DMYIAVTG-----KEEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             SEEEECCS-----CHHHHHHHHHHHHHTTCCCEE
T ss_pred             hhhcccCC-----cHHHHHHHHHHHHHcCCceEE
Confidence            88886321     222233444555667776443

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=92.23  E-value=0.36  Score=41.71  Aligned_cols=106  Identities=10%  Similarity=0.009  Sum_probs=68.0

Q ss_pred             CcEEEEeccccHHHHHHHHhCCCcEEEEcCC-HHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CC-------CCCC
Q 018970          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-------PETG  229 (348)
Q Consensus       159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S-~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-------~~~~  229 (348)
                      ..|+.+|||-=.-...+  ..+..+..+|++ |.+++.-++.+.+.+..   ...+..+...|+.+ +.       +..+
T Consensus        91 ~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~---~~~~~~~v~~Dl~~~~~~~L~~~g~d~~  165 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRL--DWPTGTTVYEIDQPKVLAYKSTTLAEHGVT---PTADRREVPIDLRQDWPPALRSAGFDPS  165 (297)
T ss_dssp             CEEEEETCTTCCHHHHS--CCCTTCEEEEEECHHHHHHHHHHHHHTTCC---CSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CeEEEeCcccCChhhhc--CCCcCceEEEcCChHHHHHHHHHHHhcCCC---CCceEEEecccccchHHHHHHhcCCCCC
Confidence            35777999864443333  223334444433 77777666665443221   12346667777764 11       1123


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .--++++-.++.+++.++...+|+.+.+...||+.|++..
T Consensus       166 ~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~  205 (297)
T d2uyoa1         166 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET  205 (297)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             CCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            3456777889999999999999999999999999998853

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.92  E-value=0.37  Score=37.64  Aligned_cols=94  Identities=14%  Similarity=-0.080  Sum_probs=60.9

Q ss_pred             CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCCCC------
Q 018970          155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFT------  225 (348)
Q Consensus       155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~------  225 (348)
                      ++++.+||-+|||. |.++..++.. +...|+++|.++.-++.+++.=...            ++.. +-.+..      
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~------------~i~~~~~~~~~~~~~~~   93 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE------------CINPQDFSKPIQEVLIE   93 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE------------EECGGGCSSCHHHHHHH
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcE------------EEeCCchhhHHHHHHHH
Confidence            78889999999984 4455556554 5568999999999999988753221            1111 111110      


Q ss_pred             CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      ...+.+|+|+-.-.-        ...++.+..++++||.+++.
T Consensus        94 ~~~~g~D~vid~~G~--------~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          94 MTDGGVDYSFECIGN--------VKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             HTTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEE
T ss_pred             HcCCCCcEeeecCCC--------HHHHHHHHHhhcCCceeEEE
Confidence            112568999864331        25677889999998776654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.38  E-value=0.035  Score=44.13  Aligned_cols=94  Identities=15%  Similarity=0.055  Sum_probs=59.8

Q ss_pred             CCCCCcEEEEec-c-ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970          155 NNQHLVALDCGS-G-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD  232 (348)
Q Consensus       155 ~~~~~~VLDvGc-G-~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  232 (348)
                      +.++.+||-.|+ | .|..+..+++....+|++++.+++-++.+++.-.+         ..+++  .+..........+|
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~---------~~i~~--~~~~~~~~~~~g~D   93 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE---------EAATY--AEVPERAKAWGGLD   93 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS---------EEEEG--GGHHHHHHHTTSEE
T ss_pred             CCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc---------eeeeh--hhhhhhhhcccccc
Confidence            678889999884 4 47788888876555799999999888888764221         11111  11100001125699


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      +|+-.-  .  .      .+..+.++|+|+|.+++.-
T Consensus        94 ~v~d~~--G--~------~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          94 LVLEVR--G--K------EVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             EEEECS--C--T------THHHHHTTEEEEEEEEEC-
T ss_pred             cccccc--c--h------hHHHHHHHHhcCCcEEEEe
Confidence            988631  1  1      2456778999999998753

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.27  E-value=0.29  Score=38.55  Aligned_cols=94  Identities=14%  Similarity=0.022  Sum_probs=61.1

Q ss_pred             CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------C
Q 018970          155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P  226 (348)
Q Consensus       155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~  226 (348)
                      ++++.+||-.|+  |.|.++..++......+.++.-+++-.+.+++.-..            .+....-.++.      .
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~------------~vi~~~~~~~~~~v~~~t   90 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVE------------YVGDSRSVDFADEILELT   90 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCS------------EEEETTCSTHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccccccc------------ccccCCccCHHHHHHHHh
Confidence            677889999773  457788888876555688888788888887753211            11111111211      1


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ....+|+|+.+-.       .  ..++.+.++|+++|.++...
T Consensus        91 ~~~g~d~v~d~~g-------~--~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          91 DGYGVDVVLNSLA-------G--EAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             TTCCEEEEEECCC-------T--HHHHHHHHTEEEEEEEEECS
T ss_pred             CCCCEEEEEeccc-------c--hHHHHHHHHhcCCCEEEEEc
Confidence            2356999997443       1  35667789999999999863

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.94  E-value=0.15  Score=40.73  Aligned_cols=99  Identities=14%  Similarity=0.036  Sum_probs=63.9

Q ss_pred             CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CCCCCce
Q 018970          155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRY  231 (348)
Q Consensus       155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~f  231 (348)
                      ..++.+||--|+  |-|.++.++++....+|+++.-|++-.+.+++.-.+.         .++....+.+.. ....+.|
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~---------vi~~~~~~~~~~~~~~~~gv   99 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE---------VLAREDVMAERIRPLDKQRW   99 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE---------EEECC---------CCSCCE
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce---------eeecchhHHHHHHHhhccCc
Confidence            456778999985  4577888888776557999998888899888753321         122111111111 1234689


Q ss_pred             eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      |+|+-+-.         ...+....++|+|||.+++.-..
T Consensus       100 D~vid~vg---------g~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         100 AAAVDPVG---------GRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             EEEEECST---------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred             CEEEEcCC---------chhHHHHHHHhCCCceEEEeecc
Confidence            98886432         13567889999999999986543

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=90.39  E-value=0.28  Score=41.31  Aligned_cols=111  Identities=14%  Similarity=0.081  Sum_probs=76.3

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhCC-----------------------------------------CcEEEEcCCHHHH
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRYF-----------------------------------------NEVDLLEPVSHFL  193 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~~-----------------------------------------~~v~~vD~S~~~l  193 (348)
                      ...+..++|-=||+|.+.+..+-...                                         ..+.+.|+++.++
T Consensus        48 w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai  127 (249)
T d1o9ga_          48 GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAA  127 (249)
T ss_dssp             CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             CCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHH
Confidence            45667899999999999876654210                                         0356888888888


Q ss_pred             HHHH---HHhCCCCCCCcCCCcceeEEEcCCCCCCC-----CCCceeEEeechhhhc-C------ChhhHHHHHHHHHHc
Q 018970          194 DAAR---ESLAPENHMAPDMHKATNFFCVPLQDFTP-----ETGRYDVIWVQWCIGH-L------TDDDFVSFFKRAKVG  258 (348)
Q Consensus       194 ~~a~---~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~fD~Ii~~~~l~~-~------~~~d~~~~l~~~~~~  258 (348)
                      +.|+   +++...|+     ...+.+...|+.+...     .+..+++|++|..... +      ..+.+..++..+.++
T Consensus       128 ~~A~~~r~n~~~Agl-----~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~  202 (249)
T d1o9ga_         128 QAARRLRERLTAEGG-----ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASA  202 (249)
T ss_dssp             HHHHHHHHHHHHTTS-----SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC-----CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHcc
Confidence            8884   45555444     4568888888866431     2356799999876553 2      113467788889999


Q ss_pred             CCCCcEEEEEec
Q 018970          259 LKPGGFFVLKEN  270 (348)
Q Consensus       259 LkpgG~lii~~~  270 (348)
                      |.....++++.+
T Consensus       203 ~p~~s~~~it~~  214 (249)
T d1o9ga_         203 LPAHAVIAVTDR  214 (249)
T ss_dssp             SCTTCEEEEEES
T ss_pred             CCCCcEEEEeCc
Confidence            976677777653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=90.15  E-value=0.41  Score=37.78  Aligned_cols=94  Identities=10%  Similarity=-0.048  Sum_probs=64.4

Q ss_pred             CCCCCcEEEEeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------C
Q 018970          155 NNQHLVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~  226 (348)
                      ++++.+||-.|++.  |..+..+++....+|+++.-+++.++.+++.-..            ..+..+-+++.      .
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~------------~vi~~~~~~~~~~~~~~~   94 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFD------------AAFNYKTVNSLEEALKKA   94 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EEEETTSCSCHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhh------------hhcccccccHHHHHHHHh
Confidence            67889999888854  6678888877666899999999888888775322            11111111111      1


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ....+|+|+-+-.         ...++.+.++|+|||.+++.-
T Consensus        95 ~~~Gvd~v~D~vG---------~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          95 SPDGYDCYFDNVG---------GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             CTTCEEEEEESSC---------HHHHHHHGGGEEEEEEEEECC
T ss_pred             hcCCCceeEEecC---------chhhhhhhhhccCCCeEEeec
Confidence            2356999885332         246788999999999999864

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=89.92  E-value=0.61  Score=36.40  Aligned_cols=94  Identities=12%  Similarity=-0.023  Sum_probs=62.8

Q ss_pred             CCCCCcEEEEecc--ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------C
Q 018970          155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG--~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~  226 (348)
                      +.++.+||=.|+|  .|..+..+++....+|++++.|++-++.+++.-..            .++...-.++.      -
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~------------~vi~~~~~d~~~~v~~~t   93 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW------------QVINYREEDLVERLKEIT   93 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe------------EEEECCCCCHHHHHHHHh
Confidence            5778899999666  46788888876555799999999999998875322            11111112211      1


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      ....+|+|+..-.-         ..+......|+|+|.+++..
T Consensus        94 ~g~g~d~v~d~~g~---------~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          94 GGKKVRVVYDSVGR---------DTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             TTCCEEEEEECSCG---------GGHHHHHHTEEEEEEEEECC
T ss_pred             CCCCeEEEEeCccH---------HHHHHHHHHHhcCCeeeecc
Confidence            23578988764431         24567888999999987754

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=89.37  E-value=0.28  Score=42.01  Aligned_cols=57  Identities=7%  Similarity=-0.053  Sum_probs=45.7

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~  202 (348)
                      .++.+++...     .+++..|||.=||+|..+......+- ..+|+|++++.++.|++++.+
T Consensus       238 ~L~~rlI~~~-----s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         238 KLPEFFIRML-----TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHHHH-----CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHhhhhc-----ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence            5556655432     46788999999999999987665555 599999999999999988865

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.14  E-value=0.79  Score=35.70  Aligned_cols=96  Identities=13%  Similarity=-0.126  Sum_probs=59.2

Q ss_pred             CCCCCcEEEEeccccH-HHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------C
Q 018970          155 NNQHLVALDCGSGIGR-ITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P  226 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~-~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~  226 (348)
                      ++++.+||-+|||.+. .+..++.. +...|.++|.+++-++.+++.-...           .+...+..+..      .
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~-----------~i~~~~~~~~~~~~~~~~   94 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE-----------CVNPQDYKKPIQEVLTEM   94 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE-----------EECGGGCSSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCee-----------EEecCCchhHHHHHHHHH
Confidence            7888999999997644 44444444 4458999999999999998764321           11111211110      1


Q ss_pred             CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 018970          227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE  269 (348)
Q Consensus       227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg-G~lii~~  269 (348)
                      ..+.+|+|+-.....        ..++.+...+++| |.+++..
T Consensus        95 ~~~G~D~vid~~G~~--------~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          95 SNGGVDFSFEVIGRL--------DTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             TTSCBSEEEECSCCH--------HHHHHHHHHBCTTTCEEEECS
T ss_pred             hcCCCCEEEecCCch--------hHHHHHHHHHhcCCcceEEec
Confidence            235789988644422        3456666777776 5666643

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=87.47  E-value=0.47  Score=39.13  Aligned_cols=56  Identities=14%  Similarity=0.121  Sum_probs=43.7

Q ss_pred             HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhC
Q 018970          140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA  201 (348)
Q Consensus       140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~  201 (348)
                      .++.+++...     ..++..|||.=||+|..+......+- ..+|+|+++..++.|++++.
T Consensus       200 ~L~~~lI~~~-----s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         200 DLIERIIRAS-----SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHH-----CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHh-----CCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence            4555555432     36778999999999999987654444 69999999999999998863

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.78  E-value=1.5  Score=36.27  Aligned_cols=70  Identities=20%  Similarity=0.178  Sum_probs=50.6

Q ss_pred             CCCcEEEEecccc---HHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------CC
Q 018970          157 QHLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE  227 (348)
Q Consensus       157 ~~~~VLDvGcG~G---~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~  227 (348)
                      .+.++|-.|++.|   .++..|++.+.. |.++|.+++-++...+...           ++.++++|+.+..      ..
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~-V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~d~~~v~~~~~~   73 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSRTQADLDSLVRECP-----------GIEPVCVDLGDWEATERALGS   73 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHHHH
Confidence            4568899998877   356667767775 9999999998887776653           3667788887642      12


Q ss_pred             CCceeEEeech
Q 018970          228 TGRYDVIWVQW  238 (348)
Q Consensus       228 ~~~fD~Ii~~~  238 (348)
                      -++.|+++.+-
T Consensus        74 ~g~iDilVnnA   84 (244)
T d1pr9a_          74 VGPVDLLVNNA   84 (244)
T ss_dssp             CCCCCEEEECC
T ss_pred             hCCceEEEecc
Confidence            36899998653

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.10  E-value=1.8  Score=37.58  Aligned_cols=114  Identities=10%  Similarity=0.132  Sum_probs=70.8

Q ss_pred             CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCC-HHHHHHHHHHhCC----------C--CCCCc---CCCcceeEEEc
Q 018970          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAP----------E--NHMAP---DMHKATNFFCV  219 (348)
Q Consensus       156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S-~~~l~~a~~~~~~----------~--~~~~~---~~~~~i~~~~~  219 (348)
                      ++...|+-+|||.=.....+...... +..+|++ |+.++.=++.+.+          .  .....   ....+-..+.+
T Consensus        95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~-~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~  173 (328)
T d1rjda_          95 NEKVQVVNLGCGSDLRMLPLLQMFPH-LAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  173 (328)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTT-EEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCccchHHHHhhccCCC-cEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEec
Confidence            44568999999987777777665554 6666655 3333322221110          0  00000   00235667777


Q ss_pred             CCCCCC---------CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          220 PLQDFT---------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       220 d~~~~~---------~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      |+.+..         .....--++++-.++.+++.++..++++.+.+.. |+|.+++.|.+
T Consensus       174 DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f-~~~~~i~YE~i  233 (328)
T d1rjda_         174 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPI  233 (328)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred             CCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC-CCceEEEeccC
Confidence            887642         1122345888899999999988999999999887 55777777765

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=84.11  E-value=1.4  Score=33.96  Aligned_cols=101  Identities=12%  Similarity=0.017  Sum_probs=57.7

Q ss_pred             CcEEEEeccccH--HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCC-CcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970          159 LVALDCGSGIGR--ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFTPETGRYDVIW  235 (348)
Q Consensus       159 ~~VLDvGcG~G~--~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii  235 (348)
                      .+|.-||+|...  ++..|+..+. +|.++|.++.-++..++.-...... .............|..+.   -...|+|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~aD~ii   77 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVIL   77 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---hcCCCEEE
Confidence            478889999743  3455555565 5999999999888877642110000 000000011111121110   13578888


Q ss_pred             echhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970          236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK  268 (348)
Q Consensus       236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~  268 (348)
                      +.-     +......+++++...|+++-.+++.
T Consensus        78 i~v-----~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          78 IVV-----PAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             ECS-----CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             EEE-----chhHHHHHHHHhhhccCCCCEEEEe
Confidence            642     2225678999999999998866543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.73  E-value=0.87  Score=37.89  Aligned_cols=58  Identities=14%  Similarity=0.090  Sum_probs=45.6

Q ss_pred             HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC
Q 018970          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (348)
Q Consensus       139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~  202 (348)
                      ..++.+++...     ..++..|||.=||+|..+.+....+- ..+|+|+++...+.|++++..
T Consensus       194 ~~L~~~~I~~~-----s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         194 AAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             HHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhh-----cCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHH
Confidence            35555555432     36788999999999999887665555 599999999999999988753

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.70  E-value=1.1  Score=37.18  Aligned_cols=77  Identities=14%  Similarity=0.071  Sum_probs=54.9

Q ss_pred             CCCcEEEEeccccH---HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-------
Q 018970          157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------  226 (348)
Q Consensus       157 ~~~~VLDvGcG~G~---~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------  226 (348)
                      .+..||--|++.|.   ++..|++++.. |..+|.+++-++...+.+...       +.++.+..+|+.+...       
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~-V~l~~r~~~~l~~~~~~~~~~-------~~~~~~~~~Dvs~~~~v~~~~~~   77 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINKHGLEETAAKCKGL-------GAKVHTFVVDCSNREDIYSSAKK   77 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHT-------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhc-------CCcEEEEEeeCCCHHHHHHHHHH
Confidence            34577777887763   56677777775 999999999998887766543       3468888899987531       


Q ss_pred             ---CCCceeEEeechhhh
Q 018970          227 ---ETGRYDVIWVQWCIG  241 (348)
Q Consensus       227 ---~~~~fD~Ii~~~~l~  241 (348)
                         ..+..|+++.+..+.
T Consensus        78 i~~~~g~idilinnag~~   95 (244)
T d1yb1a_          78 VKAEIGDVSILVNNAGVV   95 (244)
T ss_dssp             HHHHTCCCSEEEECCCCC
T ss_pred             HHHHcCCCceeEeecccc
Confidence               235789988664444

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=83.16  E-value=0.75  Score=41.29  Aligned_cols=48  Identities=25%  Similarity=0.340  Sum_probs=39.1

Q ss_pred             CCCCCcEEEEeccccHHHHHHHHhC---CCcEEEEcCCHHHHHHHHHHhCC
Q 018970          155 NNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAP  202 (348)
Q Consensus       155 ~~~~~~VLDvGcG~G~~~~~la~~~---~~~v~~vD~S~~~l~~a~~~~~~  202 (348)
                      +.+...++||||-.|..+..++...   ..+|+++|+++...+..++++..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~  260 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  260 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            4567799999999999888776542   23799999999999999887653

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=81.81  E-value=0.82  Score=35.70  Aligned_cols=98  Identities=13%  Similarity=-0.007  Sum_probs=62.6

Q ss_pred             CCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCcee
Q 018970          156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD  232 (348)
Q Consensus       156 ~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD  232 (348)
                      .++.+||--|+  |-|.++.+|++....+|+++.-|++-.+.+++.-.+.         .++....+..... ...+.+|
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~---------vi~~~~~~~~~~~~~~~~gvd   92 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASE---------VISREDVYDGTLKALSKQQWQ   92 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSE---------EEEHHHHCSSCCCSSCCCCEE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccc---------eEeccchhchhhhcccCCCce
Confidence            34557887774  4577888888765556999998888888887764331         1111111111111 2235799


Q ss_pred             EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970          233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI  271 (348)
Q Consensus       233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~  271 (348)
                      +|+-+-     .    ...+.+..++|+|+|.+++.-..
T Consensus        93 ~vid~v-----g----g~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          93 GAVDPV-----G----GKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             EEEESC-----C----THHHHHHHTTEEEEEEEEECCCS
T ss_pred             EEEecC-----c----HHHHHHHHHHhccCceEEEeecc
Confidence            987542     2    14678899999999999986543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.35  E-value=3.4  Score=33.85  Aligned_cols=68  Identities=24%  Similarity=0.218  Sum_probs=48.0

Q ss_pred             CCcEEEEeccccH---HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------CCC
Q 018970          158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET  228 (348)
Q Consensus       158 ~~~VLDvGcG~G~---~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~  228 (348)
                      +.++|--|++.|.   ++..|++.+.. |.++|.+++-++...+...           .+.++.+|+.+..      ..-
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~~   72 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGAK-VVAVTRTNSDLVSLAKECP-----------GIEPVCVDLGDWDATEKALGGI   72 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHHHHc
Confidence            5678888877663   45666666775 9999999888877766643           3667788887643      123


Q ss_pred             CceeEEeec
Q 018970          229 GRYDVIWVQ  237 (348)
Q Consensus       229 ~~fD~Ii~~  237 (348)
                      ++.|+++.+
T Consensus        73 g~iDilVnn   81 (242)
T d1cyda_          73 GPVDLLVNN   81 (242)
T ss_dssp             CCCSEEEEC
T ss_pred             CCCeEEEEC
Confidence            678998865

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.12  E-value=3.2  Score=32.46  Aligned_cols=92  Identities=9%  Similarity=-0.040  Sum_probs=57.5

Q ss_pred             CCcEEEEe--ccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CCCC
Q 018970          158 HLVALDCG--SGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG  229 (348)
Q Consensus       158 ~~~VLDvG--cG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~  229 (348)
                      +.+||-.|  .|.|.++.++++... ..|.++..+++......+.+..           -.++...-+++.     ..+.
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga-----------d~vi~~~~~~~~~~~~~~~~~   99 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF-----------DAAVNYKTGNVAEQLREACPG   99 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC-----------SEEEETTSSCHHHHHHHHCTT
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc-----------eEEeeccchhHHHHHHHHhcc
Confidence            36799887  467899999997654 4577777777766665554432           111111111111     1124


Q ss_pred             ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970          230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE  269 (348)
Q Consensus       230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~  269 (348)
                      .+|+|+-+-.         ...+....++|+|+|.++..-
T Consensus       100 GvDvv~D~vG---------g~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2         100 GVDVYFDNVG---------GDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             CEEEEEESSC---------HHHHHHHHTTEEEEEEEEEC-
T ss_pred             CceEEEecCC---------chhHHHHhhhccccccEEEec
Confidence            6999984332         246788999999999998753